BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001092
         (1159 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225464023|ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 2058 bits (5333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 980/1141 (85%), Positives = 1062/1141 (93%), Gaps = 13/1141 (1%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR 81
            A PVK  VDKF LLPEFLKVRGLVKQHLDSFNYFV T I+KIVRANDRIVS +DPSI+LR
Sbjct: 12   ADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIYLR 71

Query: 82   FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI 141
            FKDVRIG+PS+TVDG+SEKLNPH CRLSDMTYAAPILVNIEY+ GSH +KT +EKNDVVI
Sbjct: 72   FKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTRVEKNDVVI 131

Query: 142  GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT 201
            GR+PIMLRSC CVLY KDEAELARLGECPLDPGGYF++KGTEKV+LIQEQLSKNR+IIDT
Sbjct: 132  GRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDT 191

Query: 202  DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
            DKKGNINASVTSSTE+ KSKTVI MEK K++L LNQF  KIPIM+VMKAMGMESDQEVVQ
Sbjct: 192  DKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGMESDQEVVQ 251

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
            MVGR+PRYSALLLPS+EECA+  IYTQ++ALE+LE KVK+  F +P  ++EGR  +ILRD
Sbjct: 252  MVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEGRGMAILRD 311

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             F+ANVPV  NNFRPKC YVAVMLRRM++A+LNKDAMDDKDYVGNKRLELSGQL+SLLFE
Sbjct: 312  TFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISLLFE 371

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQ---FIVRDSITVGLERTLSTGNFDVKRFK 438
            DLFKTMISEV+KT+D IL+KPSRSSRFD SQ   FIVRDSITVGLERTLSTGN+DVKRF+
Sbjct: 372  DLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTGNWDVKRFR 431

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            MHRKGM+QV+ARLS+IG+LGHMT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC
Sbjct: 432  MHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 491

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLALMTHVTTDEEE PLISLCY LGVEDLELLSGEELH PNSFL+IFNGLILGKHR
Sbjct: 492  GLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILGKHR 551

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            RP+ FA+ +RKLRRAGKIGEFVSVFVNEKQ CVYIASDGGRVCRP+VIADKG SRIKEHH
Sbjct: 552  RPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSRIKEHH 611

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            MKEL+DGVR+FDDFLR+GLIEYLDVNEENNALIALYE DA P+TTHIEIEPFTILGV AG
Sbjct: 612  MKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGVCAG 671

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            LIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMDSLLYLLVYPQRPLLTTRTIELVGY
Sbjct: 672  LIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 731

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK++A+NQ+Y N+ SDRI
Sbjct: 732  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRI 791

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
            +RP + G  AERMQ          ILDDDGLAAPGEIIKPND+YINKESP+ T+G ++SP
Sbjct: 792  VRPLKVGHDAERMQ----------ILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISP 841

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
             G  DS Y+ +RQT+KGP+GE  VVDRVALCSDKN +LCIKFLIRHTRRPE+GDKFSSRH
Sbjct: 842  VGLPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRH 901

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG
Sbjct: 902  GQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 961

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            SAFGEPSGHAD VE+IS+TLVKHGFSY+GKD IYSGITGCPLQAYIFMGPIYYQKLKHMV
Sbjct: 962  SAFGEPSGHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMV 1021

Query: 1039 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1098
            LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE
Sbjct: 1022 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1081

Query: 1099 VQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            VQVCRVCGLLGYYNHKLK GICSTCKNGDNIS+MKLPYACKLL QELQ+MN+VPRLKL E
Sbjct: 1082 VQVCRVCGLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRLKLTE 1141

Query: 1159 A 1159
            A
Sbjct: 1142 A 1142


>gi|255569145|ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
 gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 2039 bits (5283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 985/1165 (84%), Positives = 1061/1165 (91%), Gaps = 32/1165 (2%)

Query: 1    MGLMQVEGSPKD------EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNY 54
            MGLMQ + S  +      EQL DKQKL AP+KS VDKFQLLPEFLKVRGLVKQHLDSFNY
Sbjct: 1    MGLMQTDSSIGNNEQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNY 60

Query: 55   FVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYA 114
            FVN GI+KIVRANDRIVS +DP I+LRFKDVRIG PS  +DGVSE+L+PHMCRLSD TYA
Sbjct: 61   FVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYA 120

Query: 115  APILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
            APILVN+EY+ GSH +KT +EKNDVVIGR+PIMLRS  CVLYGKDEAELARLGECPLDPG
Sbjct: 121  APILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPG 180

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            GYF+IKGTEKV+LIQEQLSKNR+IIDTDKKGNINASVTSSTE  KSKT+IQMEK KMYL 
Sbjct: 181  GYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLC 240

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEY 294
            LNQFVKKIPIMVV+KAMGMESDQEVVQMVGRDPRYSALLLPSIEECA L IYTQ+KALEY
Sbjct: 241  LNQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEY 300

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            L+GK             E RA +ILRDVFLANVPVH NNFRPKC YVAVMLRRM+EAMLN
Sbjct: 301  LDGK-------------ENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLN 347

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
            KDAMDDKDYVGNKRLELSGQL+SLLFEDLFKTMI+EVQ+T+D +L+K +RSSRFDL+Q+I
Sbjct: 348  KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYI 407

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
            VRD+IT GLERTLSTGNFDVKRFKMHRKGMTQVL RLS+I +LG MTRVSPQFEKSRKVS
Sbjct: 408  VRDNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVS 467

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
            GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD+EEGPLISLCYCLGVEDLELL
Sbjct: 468  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELL 527

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            SGEELH PNSFLVIFNGLILGKHRRP+ F + MRKLRRAGKIGEFVSVFVNEKQR VY+A
Sbjct: 528  SGEELHTPNSFLVIFNGLILGKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLA 587

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            SDGGRVCRPLVIAD+G+SRIKEHHMKEL DGVR+FDDFLR+GLIEYLDVNEENNAL+ALY
Sbjct: 588  SDGGRVCRPLVIADRGVSRIKEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALY 647

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            EG+ATP+TTHIEIEPFTILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD
Sbjct: 648  EGEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMD 707

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGF
Sbjct: 708  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGF 767

Query: 775  GRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
            GRCIV+KKY AI QKY N  SDRILRPDRT    ER +V          LD DGLAAPGE
Sbjct: 768  GRCIVMKKYPAIRQKYENGASDRILRPDRT---VERERV----------LDYDGLAAPGE 814

Query: 835  IIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNG 894
            IIKP+D+Y+ KE P++T G + S     + +YR +  +YKGP+GE+ V+DRVAL SD+N 
Sbjct: 815  IIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPEGESPVIDRVALSSDRNN 874

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
            +LCIK +IRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSR
Sbjct: 875  NLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSR 934

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE+ISETLV  GFSYNGKD+IYSG
Sbjct: 935  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSG 994

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG+GPRVMLTRQPTEGRARNGGLRVGEMER
Sbjct: 995  ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMER 1054

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCLIAYGASMLIFERLM+SSDPFEVQVCRVCGLLGY+N KL+AGICSTCKNGDNIS+MKL
Sbjct: 1055 DCLIAYGASMLIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKL 1114

Query: 1135 PYACKLLIQELQSMNIVPRLKLAEA 1159
            PYACKLLIQELQSMNIVPRLKLAEA
Sbjct: 1115 PYACKLLIQELQSMNIVPRLKLAEA 1139


>gi|224132576|ref|XP_002321356.1| predicted protein [Populus trichocarpa]
 gi|222868352|gb|EEF05483.1| predicted protein [Populus trichocarpa]
          Length = 1141

 Score = 2010 bits (5207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 961/1154 (83%), Positives = 1038/1154 (89%), Gaps = 20/1154 (1%)

Query: 13   EQLPDKQK-LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV 71
            + L DKQK  AAPVKS VDKFQLLPEFLK RGLVKQHLDSFNYF+N GI+KIVRANDRIV
Sbjct: 1    DHLIDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIV 60

Query: 72   SGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            S +DPS++LRF DV+IG+PSM VD +SE++ PHMCRLSD TYAAPILVNIEY+ GSH  K
Sbjct: 61   STVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAPILVNIEYISGSHGRK 120

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              M KNDVVIGR+PIMLRSC CVLYGK+EAELARLGECPLDPGGYF++KGTEKV+LIQEQ
Sbjct: 121  EKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQ 180

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            LSKNR+IID DKKGNINASVTSSTE  KSKTVI MEK KMYL LNQF KKIPIMVVMKAM
Sbjct: 181  LSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAM 240

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            GMESDQEVVQMVGRDPRYSALLLPSIEECA+  +YTQ++ALEYLE  VKRST+ S   ++
Sbjct: 241  GMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEAMVKRSTYSSSSTEK 300

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            E RA +ILRDVF+ANVPV  NNFRPKC YVAVMLRRM+EA+LNKDAMDDKDYVGNKRLEL
Sbjct: 301  ENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLEL 360

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            SGQL+SLLFEDLFKTMI+EVQKT D +L K +RSSRFD SQ+IVRDSIT GLER LSTGN
Sbjct: 361  SGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITNGLERALSTGN 420

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +DVKRF+M+RKG+TQVL RLS++ +LGHMTR+SPQFEKSRKVSGPRALQPSQWGMLCPCD
Sbjct: 421  WDVKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGPRALQPSQWGMLCPCD 480

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTHVTTDEEE PLISLC CLGVEDLELLSGEELH PNSFLVIFNG
Sbjct: 481  TPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSGEELHTPNSFLVIFNG 540

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
            LILGKHRRP+ FA+ MRKLRRAGKIGEFVSVFVNEKQR VYIASDGGRVCRPLVIADKG+
Sbjct: 541  LILGKHRRPQQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIASDGGRVCRPLVIADKGV 600

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
            SRIKEHHM+EL+DG R+FDDFL EGLIEYLDVNEENNALIALYE +ATP+TTHIEIEPFT
Sbjct: 601  SRIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYEWEATPETTHIEIEPFT 660

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQ  RMDSLLYLLVYPQRPLLTTR
Sbjct: 661  ILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTR 720

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKYT  NQKY 
Sbjct: 721  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYE 780

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N  SDRILRP R     ER            +LDDDGLAAPGEII+  D+YINKESP+ET
Sbjct: 781  NGASDRILRP-RKNEERER------------VLDDDGLAAPGEIIRHGDIYINKESPIET 827

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
            RG + S     D +YR   Q +KG +GE+CVVDRVALCSDKN +LCIK+ IRHTRRPE+G
Sbjct: 828  RGPLKSAAALADVKYRPCAQIFKGTEGESCVVDRVALCSDKNNNLCIKYKIRHTRRPEVG 887

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS
Sbjct: 888  DKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 947

Query: 972  CGRFHYGSAFGEPSGHADTVESIS------ETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            CGRFHYGSAFGEPSGHAD VE+I       ETLVKHGFSYNGKD IYSGITGCPLQAYIF
Sbjct: 948  CGRFHYGSAFGEPSGHADRVEAIRHFLSLIETLVKHGFSYNGKDFIYSGITGCPLQAYIF 1007

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT+GRARNGGLRVGEME+DCL+AYG SML
Sbjct: 1008 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTDGRARNGGLRVGEMEKDCLVAYGTSML 1067

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            ++ERLMVSSD FE QVCR CGLLGYYN KLKA +C+TCKNGD +S+MKLPYACKLLIQEL
Sbjct: 1068 LYERLMVSSDQFEAQVCRACGLLGYYNQKLKAAMCTTCKNGDKVSTMKLPYACKLLIQEL 1127

Query: 1146 QSMNIVPRLKLAEA 1159
            QSMNIVPRLKLAEA
Sbjct: 1128 QSMNIVPRLKLAEA 1141


>gi|449447799|ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1982 bits (5135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 958/1152 (83%), Positives = 1042/1152 (90%), Gaps = 14/1152 (1%)

Query: 9    SPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND 68
            +P D  + DKQ +  P+KS VDKFQLLPEFLKVRGLVKQHLDSFNYFVNT I+KIV+AND
Sbjct: 20   NPIDSDI-DKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKAND 78

Query: 69   RIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH 128
            RI S  DPSI+LRF DVRIG+PS+TV+ VSE +NPHMCRLSD+TYAAPILV+IEY++ SH
Sbjct: 79   RIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEESH 138

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
             +K   EK DVVIGR+PIMLRS  CVL+GKDEAELARLGECPLDPGGYFIIKGTEKV+LI
Sbjct: 139  AQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVLI 198

Query: 189  QEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVK-KIPIMVV 247
            QEQLSKNR+IIDTDKKGNINASVTSSTE  KSKTVI+ME  K+YL LN F   KIPIMVV
Sbjct: 199  QEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMVV 258

Query: 248  MKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
            +KAMGMES QEVVQMVGRDPRY ALLLPSIEECA   IYTQE+ALEYLE KVK+  F S 
Sbjct: 259  LKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFASA 318

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
            P ++EGRA  ILRDVFLANVPV+ NNF PKC YVAVM+RRM++A+L+KDAMDDKDYVGNK
Sbjct: 319  PPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNK 378

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTL 427
            RLELSGQL+SLLFEDLFKTM+SEV+KT+D +L K SRSSRFD SQ +  + I+ GLERTL
Sbjct: 379  RLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTL 438

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            STGN+DVKRF+MHRKGM+QVLARLSFI T+GH+TRVSPQFEKSRKVSGPRALQPSQWGML
Sbjct: 439  STGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGML 498

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CPCDTPEGEACGLVKNLALMTHVTTD+EEGPLISLCYCLGVEDLELLS EELH PNSFLV
Sbjct: 499  CPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLV 558

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
            IFNG ILGKHRRP+ FA  MR LRRAGKIGEFVSVFVNEKQ CVYIASDGGRVCRPLVIA
Sbjct: 559  IFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIA 618

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            DKG+SRIKE+HMKEL DGVR+FDDFLR+GLIEYLDVNEENNALIALYEG+ATP+TTHIEI
Sbjct: 619  DKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEI 678

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFTILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPL
Sbjct: 679  EPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPL 738

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            LTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV KKY+++N
Sbjct: 739  LTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVN 798

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            QKY N+T+DRI+RP+R       MQ          ILDDDGLAAPGEII+PND+Y+NK+S
Sbjct: 799  QKYENNTADRIVRPNRNEDFTGNMQ----------ILDDDGLAAPGEIIRPNDIYVNKQS 848

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P+  +GS +   G  D+ YR  RQ +KG +GE  VVDRVAL +DKN  LCIKFLIR TRR
Sbjct: 849  PIIMKGSPLP--GIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRR 906

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK
Sbjct: 907  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 966

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
            AGVSCGRFHYGSAFGEPSGHAD V++ISETL+K GFSYNGKD +YSGITGCPLQAYIFMG
Sbjct: 967  AGVSCGRFHYGSAFGEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMG 1026

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI+
Sbjct: 1027 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIY 1086

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERLM+SSDPFEVQVCRVCGLLGYYNHKLK GICS+CKNGDNIS+MKLPYACKLLIQELQS
Sbjct: 1087 ERLMISSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQS 1146

Query: 1148 MNIVPRLKLAEA 1159
            MNIVPRLKLAEA
Sbjct: 1147 MNIVPRLKLAEA 1158


>gi|297791275|ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309357|gb|EFH39781.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1165

 Score = 1936 bits (5015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 923/1166 (79%), Positives = 1041/1166 (89%), Gaps = 31/1166 (2%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV 71
            D+   DK+KL+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNYF+N GI+KIV AN RI 
Sbjct: 13   DDNFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHANCRIA 72

Query: 72   SGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            S  DPSI+LRFK+VR+G+PS+    +SE++NPHMCRL+DMTYAAPI VNIEYV GSH +K
Sbjct: 73   SVTDPSIYLRFKNVRVGEPSIMNINISEEINPHMCRLADMTYAAPIYVNIEYVHGSHGKK 132

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
             T  KND +IGR+PIMLRSCRCVL+GKDE ELARLGECPLDPGGYF+IKGTEKVLLIQEQ
Sbjct: 133  ATSVKNDFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQ 192

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            LSKNR+IID+DKKGNINASVTSSTE  KSKTVIQMEK K+YL L+QFVKKIPI++V+KAM
Sbjct: 193  LSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIPIVIVLKAM 252

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            GMESDQE+VQMVGRDPR+SA LLPSIEEC +  + TQ++AL+YLE KVK++++G PP ++
Sbjct: 253  GMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTSYGPPP-EK 311

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            +GRA  ILRD+FLA+VPV +NNFR KCFYV VMLRRM+EAMLNKD+MDDKDYVGNKRLEL
Sbjct: 312  DGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKRLEL 371

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV----RDSITVGLERTL 427
            SGQL+SLLFEDLFKTM+SE  K VD ILSKPSR+SRFD SQ++     +++I+VGLERTL
Sbjct: 372  SGQLMSLLFEDLFKTMLSEAIKKVDAILSKPSRASRFDFSQYLTTGDSQNTISVGLERTL 431

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            STGNFD+KRF+MHRKGMTQVL RLSFIG+LG +T++SPQFEKSRKVSGPR+LQPSQWGML
Sbjct: 432  STGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGML 491

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CPCDTPEGE+CGLVKNLALMTHVTTDEEEGPL+++CY LGV DLE+LS EELH P+SFLV
Sbjct: 492  CPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLV 551

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
            I NGLILGKHRRP+ FA+ +R+LRRAGKIGEFVSVF NEKQ CVY+ASDGGRVCRPLVIA
Sbjct: 552  ILNGLILGKHRRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDGGRVCRPLVIA 611

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT-------- 659
            DKGISR+K+HHMKEL DGVR+FDDF+R+GLIEYLDVNEENNALIALYE +AT        
Sbjct: 612  DKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESEATTELDEGAE 671

Query: 660  -----PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
                  DTTHIEIEPFTILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD
Sbjct: 672  AAKIKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMD 731

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            +LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS SGYDIEDAIVMNKSSLDRGF
Sbjct: 732  TLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSNSGYDIEDAIVMNKSSLDRGF 791

Query: 775  GRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
            GRCIV+KK  A  QKY N T DRIL P RTGP AE+MQ          ILDDDG+A+PGE
Sbjct: 792  GRCIVMKKIVATCQKYENGTVDRILMPQRTGPDAEKMQ----------ILDDDGIASPGE 841

Query: 835  IIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
            II+PNDVYI K+ P+  TR  I SP   +DS+YR AR+ +KGP+GET VVDRVALCSDK+
Sbjct: 842  IIRPNDVYIYKQIPVCTTRDKITSPL--SDSQYRPAREFFKGPEGETQVVDRVALCSDKS 899

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
            G LCIK++IRHTRRPELGDKFSSRHGQKGVCGTI+QQEDFPFSE GICPDLIMNPHGFPS
Sbjct: 900  GSLCIKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICPDLIMNPHGFPS 959

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGKMIELLG KAGVSCGRFHYGSAFGE SGHAD VE+IS+TLV  GFSY+GKD++YS
Sbjct: 960  RMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISKTLVDKGFSYSGKDLLYS 1019

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            G++G PL+AYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+++NGGLRVGEME
Sbjct: 1020 GLSGEPLEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEME 1079

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLIAYGASMLI+ERLM+SSDPFEVQVCR CGLLGYYN+KLK  +CSTCKNGDNI++MK
Sbjct: 1080 RDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCSTCKNGDNIATMK 1139

Query: 1134 LPYACKLLIQELQSMNIVPRLKLAEA 1159
            LPYACKLL QELQSMN+VPRLKL EA
Sbjct: 1140 LPYACKLLFQELQSMNVVPRLKLVEA 1165


>gi|79529842|ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
 gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
          Length = 1161

 Score = 1925 bits (4987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1162 (78%), Positives = 1033/1162 (88%), Gaps = 27/1162 (2%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV 71
            D+   DK+KL+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNYF+N GI KIV+AN RI 
Sbjct: 13   DDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRIT 72

Query: 72   SGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            S +DPSI+LRFK VR+G+PS+      E +NPHMCRL+DMTYAAPI VNIEYV GSH  K
Sbjct: 73   STVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNK 132

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                K++V+IGR+PIMLRSCRCVL+GKDE ELARLGECPLDPGGYFIIKGTEKVLLIQEQ
Sbjct: 133  AKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQ 192

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            LSKNR+IID+DKKGNINASVTSSTE  KSKTVIQMEK K+YL L++FVKKIPI++V+KAM
Sbjct: 193  LSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAM 252

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            GMESDQE+VQMVGRDPR+SA LLPSIEEC +  + TQ++AL+YLE KVK+ ++G+PP ++
Sbjct: 253  GMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPP-EK 311

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            +GRA SILRD+FLA+VPV +NNFR KCFYV VMLRRM+EAMLNKDAMDDKDYVGNKRLEL
Sbjct: 312  DGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLEL 371

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS---ITVGLERTLS 428
            SGQL+SLLFEDLFKTM+SE  K VD IL+KP R+SRFD SQ + +DS   I++GLERTLS
Sbjct: 372  SGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLS 431

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGNFD+KRF+MHRKGMTQVL RLSFIG++G +T++SPQFEKSRKVSGPR+LQPSQWGMLC
Sbjct: 432  TGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLC 491

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            PCDTPEGE+CGLVKNLALMTHVTTDEEEGPL+++CY LGV DLE+LS EELH P+SFLVI
Sbjct: 492  PCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVI 551

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NGLILGKH RP+ FA+ +R+LRRAGKIGEFVSVF NEKQ CVY+ASD GRVCRPLVIAD
Sbjct: 552  LNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIAD 611

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT--------- 659
            KGISR+K+HHMKEL DGVR+FDDF+R+GLIEYLDVNEENNALIALYE D T         
Sbjct: 612  KGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEA 671

Query: 660  --PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
               DTTHIEIEPFTILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LL
Sbjct: 672  AKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLL 731

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS+SGYDIEDAIVMNKSSLDRGFGRC
Sbjct: 732  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRC 791

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
            IV+KK  A++QKY N T+DRIL P RTGP AE+MQ          ILDDDGLA PGEII+
Sbjct: 792  IVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQ----------ILDDDGLATPGEIIR 841

Query: 838  PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
            PND+YINK+ P++T     S    +DS+YR AR+ +KGP+GET VVDRVALCSDK G LC
Sbjct: 842  PNDIYINKQVPVDTVTKFTS--ALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLC 899

Query: 898  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 957
            IK++IRHTRRPELGDKFSSRHGQKGVCG I+QQEDFPFSE GICPDLIMNPHGFPSRMTV
Sbjct: 900  IKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTV 959

Query: 958  GKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITG 1017
            GKMIELLG KAGVSCGRFHYGSAFGE SGHAD VE+IS TLV+ GFSY+GKD++YSGI+G
Sbjct: 960  GKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISG 1019

Query: 1018 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1077
             P++AYIFMGPIYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+++NGGLRVGEMERDCL
Sbjct: 1020 EPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCL 1079

Query: 1078 IAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            IAYGASMLI+ERLM+SSDPFEVQVCR CGLLGYYN+KLK  +C+TCKNGDNI++MKLPYA
Sbjct: 1080 IAYGASMLIYERLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYA 1139

Query: 1138 CKLLIQELQSMNIVPRLKLAEA 1159
            CKLL QELQSMN+VPRLKL EA
Sbjct: 1140 CKLLFQELQSMNVVPRLKLTEA 1161


>gi|9759599|dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score = 1896 bits (4912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/1151 (78%), Positives = 1025/1151 (89%), Gaps = 17/1151 (1%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV 71
            D+   DK+KL+AP+KS  DKFQL+PEFLKVRGLVKQHLDSFNYF+N GI KIV+AN RI 
Sbjct: 34   DDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRIT 93

Query: 72   SGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            S +DPSI+LRFK VR+G+PS+      E +NPHMCRL+DMTYAAPI VNIEYV GSH  K
Sbjct: 94   STVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNK 153

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                K++V+IGR+PIMLRSCRCVL+GKDE ELARLGECPLDPGGYFIIKGTEKVLLIQEQ
Sbjct: 154  AKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQ 213

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            LSKNR+IID+DKKGNINASVTSSTE  KSKTVIQMEK K+YL L++FVKKIPI++V+KAM
Sbjct: 214  LSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAM 273

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            GMESDQE+VQMVGRDPR+SA LLPSIEEC +  + TQ++AL+YLE KVK+ ++G+PP ++
Sbjct: 274  GMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPP-EK 332

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            +GRA SILRD+FLA+VPV +NNFR KCFYV VMLRRM+EAMLNKDAMDDKDYVGNKRLEL
Sbjct: 333  DGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLEL 392

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS---ITVGLERTLS 428
            SGQL+SLLFEDLFKTM+SE  K VD IL+KP R+SRFD SQ + +DS   I++GLERTLS
Sbjct: 393  SGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLS 452

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGNFD+KRF+MHRKGMTQVL RLSFIG++G +T++SPQFEKSRKVSGPR+LQPSQWGMLC
Sbjct: 453  TGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLC 512

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            PCDTPEGE+CGLVKNLALMTHVTTDEEEGPL+++CY LGV DLE+LS EELH P+SFLVI
Sbjct: 513  PCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVI 572

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NGLILGKH RP+ FA+ +R+LRRAGKIGEFVSVF NEKQ CVY+ASD GRVCRPLVIAD
Sbjct: 573  LNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIAD 632

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
            KGISR+K+HHMKEL DGVR+FDDF+R+GLIEYLDVNEENNAL+ L    A  DTTHIEIE
Sbjct: 633  KGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALVCLRAEAAKADTTHIEIE 692

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLL
Sbjct: 693  PFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLL 752

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
            TTRTIELVGYDKLGAGQNATVAVMS+SGYDIEDAIVMNKSSLDRGFGRCIV+KK  A++Q
Sbjct: 753  TTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQ 812

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY N T+DRIL P RTGP AE+MQ          ILDDDGLA PGEII+PND+YINK+ P
Sbjct: 813  KYDNCTADRILIPQRTGPDAEKMQ----------ILDDDGLATPGEIIRPNDIYINKQVP 862

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            ++T     S    +DS+YR AR+ +KGP+GET VVDRVALCSDK G LCIK++IRHTRRP
Sbjct: 863  VDTVTKFTS--ALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRP 920

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG I+QQEDFPFSE GICPDLIMNPHGFPSRMTVGKMIELLG KA
Sbjct: 921  ELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKA 980

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GVSCGRFHYGSAFGE SGHAD VE+IS TLV+ GFSY+GKD++YSGI+G P++AYIFMGP
Sbjct: 981  GVSCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGP 1040

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMVLDKMHARGSGPRVM+TRQPTEG+++NGGLRVGEMERDCLIAYGASMLI+E
Sbjct: 1041 IYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYE 1100

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSDPFEVQVCR CGLLGYYN+KLK  +C+TCKNGDNI++MKLPYACKLL Q ++++
Sbjct: 1101 RLMISSDPFEVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQ-VKTI 1159

Query: 1149 NIVPRLKLAEA 1159
             +  +LKL+ +
Sbjct: 1160 GLFFKLKLSTS 1170


>gi|356520824|ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1152

 Score = 1872 bits (4848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1146 (79%), Positives = 1003/1146 (87%), Gaps = 28/1146 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D++ L AP+KS VDKFQLLPEFLKVRGLVKQHLDSFNYFV T I+KIVRAND IV+   P
Sbjct: 32   DQRVLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTDIKKIVRANDLIVASRYP 91

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
             I+LRF +V IG+PS+ +D V+E L P  CRLSD+TYAAPI  ++EY  GSH +     K
Sbjct: 92   HIYLRFLNVGIGKPSIMIDEVTEDLTPQTCRLSDLTYAAPICADVEYTLGSHDKPDIKRK 151

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
              V IGR+PIMLRSC CVL+G+DEAELA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNR
Sbjct: 152  LKVEIGRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 211

Query: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            +IIDTDKKGNI ASVTSSTE +K+KTV+ MEK K++L LN+F KK+P+MVVMKAMGMESD
Sbjct: 212  IIIDTDKKGNITASVTSSTEKIKTKTVVVMEKEKLWLQLNKFPKKVPLMVVMKAMGMESD 271

Query: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            QEV QMVGRDPRYS LLLPSIEEC    +YT+E+ALEYL+               EG AF
Sbjct: 272  QEVTQMVGRDPRYSFLLLPSIEECTKCKVYTREQALEYLD-------------KLEGAAF 318

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            S LRDVFLANVPV  +NFRPKC YVAVM+RR+++A+LNKDAMDDKDYVGNKRLELSGQL+
Sbjct: 319  SALRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLI 378

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERTLSTGNFDV 434
            SLLFEDLFK+M +EV+   D +L KP ++  FD+   + R    IT+GLERTLSTGNF++
Sbjct: 379  SLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSIITLGLERTLSTGNFEI 438

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRF+M RKGMTQVL RLSFIG LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE
Sbjct: 439  KRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 498

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GE+CGLVKNLALMTHVTTDEEE PLISLC  LGVED++ LS EELH P+SFLVIFNGLIL
Sbjct: 499  GESCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHTPDSFLVIFNGLIL 558

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            GKHRRP  FA  +RKLRRAGKIGEFVSV+VNEKQ CVY+ASDGGRVCRPLVIADKGISRI
Sbjct: 559  GKHRRPLHFATAIRKLRRAGKIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKGISRI 618

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
            K+HHMKEL+DGVR+FDDFLR+GL+EYLDVNEENNALIALYEGDAT +TTHIEIEPFTILG
Sbjct: 619  KQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNALIALYEGDATSETTHIEIEPFTILG 678

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL RMDSLLYLLVYPQRPLLTT+TIE
Sbjct: 679  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIE 738

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKY AI QK++N T
Sbjct: 739  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSNDT 798

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG- 853
            SDRILRP+RT   A RMQ          ILDDDG+AAPGEI++P D+YINK+SP++TR  
Sbjct: 799  SDRILRPNRTADTAGRMQ----------ILDDDGIAAPGEILRPYDIYINKQSPIDTRTP 848

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
               S     DS YRS  Q++KG  GE  VVDRV LCSDK+ ++CIKFLIRHTRRPELGDK
Sbjct: 849  KTGSAANLPDSAYRSNAQSFKGNGGE--VVDRVVLCSDKDNNMCIKFLIRHTRRPELGDK 906

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            FSSRHGQKGVCGTIV QEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG
Sbjct: 907  FSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 966

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
            RFHYGSAFGE SGHAD VE+ISETLV  GF+Y+GKD IYSGITGCPLQAYIFMGPIYYQK
Sbjct: 967  RFHYGSAFGERSGHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQK 1026

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI+ERLM+S
Sbjct: 1027 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLS 1086

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SDPFEVQVC  CGLLGYYNHKLK GICS+CKNGDNIS+MKLPYACKL+IQELQSMNIVPR
Sbjct: 1087 SDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPR 1146

Query: 1154 LKLAEA 1159
            LKLA+A
Sbjct: 1147 LKLADA 1152


>gi|356495051|ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1166

 Score = 1863 bits (4826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1146 (78%), Positives = 1003/1146 (87%), Gaps = 15/1146 (1%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D++ L AP+KS VDKFQL+PEFLKVRGLVKQHLDSFNYFV T I+KIVRAN+ I++   P
Sbjct: 33   DQRVLTAPIKSAVDKFQLIPEFLKVRGLVKQHLDSFNYFVRTDIKKIVRANNLIMASRYP 92

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
             I+LRF +V IG+PSM +D V+E L P  CRLSD+TYAAPI  ++EY   SH +      
Sbjct: 93   HIYLRFLNVGIGKPSMMIDEVTEGLTPQTCRLSDLTYAAPICADVEYTLRSHDKPDNKRT 152

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
              V IGR+PIMLRSC CVL+GKDEAELA+LGECPLDPGGYF+IKGTEKV+LIQEQLSKNR
Sbjct: 153  LRVEIGRMPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 212

Query: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            +IIDTDKKGNI ASVTSSTE +K+KTVI ME  K++L LN+F KK+P+MVVMKAMGMESD
Sbjct: 213  IIIDTDKKGNITASVTSSTEKIKTKTVIVMENEKLWLQLNKFPKKVPLMVVMKAMGMESD 272

Query: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            QEV+QMVGRDPRYS LLLPSIEEC    +YT+E+ALEYL+  VKR T+ S   ++EG AF
Sbjct: 273  QEVIQMVGRDPRYSFLLLPSIEECRKCKVYTKEQALEYLDKLVKRPTYSSNSAEKEGAAF 332

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            S LRDVFLANVPV  +NF+ KC YVAVM+RR+++A+LNKDAMDDKDYVGNKRLELSGQL+
Sbjct: 333  SALRDVFLANVPVDQDNFQKKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLI 392

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERTLSTGNFDV 434
            SLLFEDLFK+M +EV+   D +L KP ++  FD+   + R    IT+GLERTLSTGNF++
Sbjct: 393  SLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDICTLLTRTRSIITLGLERTLSTGNFEI 452

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRF+M RKGMTQVL RLSFIG LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE
Sbjct: 453  KRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 512

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GE+CGLVKNLALMTHVTTDEEE PLISL Y L V  +E L  EELH P+SFLVIFNGLIL
Sbjct: 513  GESCGLVKNLALMTHVTTDEEEKPLISLFYSLDVARIEHLFAEELHTPDSFLVIFNGLIL 572

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            GKHRRP  FA  +RKLRRAG+IGEFVSV+VNEKQ CVY+ASDGGRVCRPLVIADKGISRI
Sbjct: 573  GKHRRPLHFATRIRKLRRAGEIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKGISRI 632

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
            K+HHMKEL+DGV +FDDFLR+GL+EYLDVNEENNALIALYEGDAT +TTHIEIEPFTILG
Sbjct: 633  KQHHMKELMDGVCTFDDFLRDGLLEYLDVNEENNALIALYEGDATSETTHIEIEPFTILG 692

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL RMDSLLYLLVYPQRPLLTT+TIE
Sbjct: 693  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIE 752

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKY AI QK++N T
Sbjct: 753  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSNDT 812

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG- 853
            SDRILRP+RT   A RMQ          ILDDDG+AAPGEI++P D+YINK+SP++TR  
Sbjct: 813  SDRILRPNRTADTAGRMQ----------ILDDDGIAAPGEILRPYDIYINKQSPIDTRTP 862

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
               S     DS YRS  Q++KG  GE  VVDRV LCSDK+ ++CIKFLIRHTRRPELGDK
Sbjct: 863  KTGSAANLPDSAYRSNAQSFKGNGGE--VVDRVVLCSDKDNNMCIKFLIRHTRRPELGDK 920

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            FSSRHGQKGVCGTIV QEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG
Sbjct: 921  FSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 980

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
            RFHYGSAFGE SGHAD VE+ISETLV  GF+Y+GKD IYSGITGCPLQAYIFMGPIYYQK
Sbjct: 981  RFHYGSAFGERSGHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQK 1040

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI+ERLM+S
Sbjct: 1041 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLS 1100

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SDPFEVQVC  CGLLGYYNHKLK GICS+CKNGDNIS+MKLPYACKL+IQELQSMNIVPR
Sbjct: 1101 SDPFEVQVCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPR 1160

Query: 1154 LKLAEA 1159
            LKLA+A
Sbjct: 1161 LKLADA 1166


>gi|115453445|ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group]
 gi|108708688|gb|ABF96483.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|113548794|dbj|BAF12237.1| Os03g0403100 [Oryza sativa Japonica Group]
          Length = 1155

 Score = 1726 bits (4471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1149 (72%), Positives = 958/1149 (83%), Gaps = 20/1149 (1%)

Query: 16   PDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID 75
            P  + LAAPV   VDKF LLP FLKVRGLVK+H+DSFNYF+  GIR IV+AN+RI +  +
Sbjct: 22   PTYRSLAAPVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNN 81

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            PSIFLR+  VR+G PS+ V  ++EK+ PH CRL+D TY+AP+L +IEY  G   E     
Sbjct: 82   PSIFLRYNSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYE--LKR 139

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            K + +IG +PIMLRS  CVL GKDEAELAR GECPLDPGGYFI+KGTEKV+LIQEQLSKN
Sbjct: 140  KPNFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKN 199

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+IIDTD KG + ASVTSST  +KSKTVI MEK K+YL LNQF K IPI+VVMKAMGMES
Sbjct: 200  RIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMES 259

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            DQEV QMVGRDPRY  LL PSI+ECA   IYTQ++AL+Y++ KV     G   N +EGR+
Sbjct: 260  DQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAG---NQKEGRS 316

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
             SILRDVF+A+VPV + NFRPKC Y AVMLRRM++A+LN D  DDKDYVGNKRLELSGQL
Sbjct: 317  KSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQL 376

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFKTM S   + ++   S+   SS  DLS  I  + IT GLER +STGN+D+K
Sbjct: 377  ISLLFEDLFKTMNSNAVELMNKT-SEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIK 435

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF+MHRKG++QVL+RLS++ +LG+MTR++PQFEK+RK SGPRALQPSQWGMLCPCDTPEG
Sbjct: 436  RFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEG 495

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGL KNLAL+THVTTD+EEGPL++LCY LGVEDL LLSGEE+H   SFLV+FNGLILG
Sbjct: 496  EACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 555

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
            KHR+P+ FA+ MRKLRR+G IGEFVS+FVNEKQ C++IASDGGRVCRPL+IADKGI R+K
Sbjct: 556  KHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIPRVK 615

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----THIEIEPF 670
            EHHMK+L DG+RSFDDFLR+GLIEYLDVNEENNALIALYE +   D      THIEIEP 
Sbjct: 616  EHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEPL 675

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            TILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R DSLLYLLVY QRPLLTT
Sbjct: 676  TILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTT 735

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI +KKYT   +KY
Sbjct: 736  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKY 795

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
                SDRI++P R   GA   Q +         LD+DG AAPG II+ +D+Y+NK++P  
Sbjct: 796  EGGYSDRIVKPQRDKDGALLKQNMR-------ALDEDGFAAPGLIIRNHDIYVNKQTPRN 848

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
            T+    S    TD  Y+ +   YKG DGET VVDRV LCSD +  L IK +IRHTRRPE+
Sbjct: 849  TKRD--SGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEV 906

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV
Sbjct: 907  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV 966

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
            SCG+FHYGSAFGEPSG+AD VE IS TLVKHGFSYNGKD++YSGI G P QAY+FMGPIY
Sbjct: 967  SCGQFHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIY 1026

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMVLDKMHAR SGPRV+LTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERL
Sbjct: 1027 YQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERL 1086

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            ++SSDP++VQVCR CGLLGYYNHKLKA  CS CKNG+N++ M++PYACKLL QELQ+MN+
Sbjct: 1087 LISSDPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNV 1146

Query: 1151 VPRLKLAEA 1159
            VPRLKL E 
Sbjct: 1147 VPRLKLTEG 1155


>gi|29788820|gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonica Group]
          Length = 1174

 Score = 1725 bits (4468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1149 (72%), Positives = 958/1149 (83%), Gaps = 20/1149 (1%)

Query: 16   PDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID 75
            P  + LAAPV   VDKF LLP FLKVRGLVK+H+DSFNYF+  GIR IV+AN+RI +  +
Sbjct: 41   PTYRSLAAPVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNN 100

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            PSIFLR+  VR+G PS+ V  ++EK+ PH CRL+D TY+AP+L +IEY  G   E     
Sbjct: 101  PSIFLRYNSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYE--LKR 158

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            K + +IG +PIMLRS  CVL GKDEAELAR GECPLDPGGYFI+KGTEKV+LIQEQLSKN
Sbjct: 159  KPNFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKN 218

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+IIDTD KG + ASVTSST  +KSKTVI MEK K+YL LNQF K IPI+VVMKAMGMES
Sbjct: 219  RIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMES 278

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            DQEV QMVGRDPRY  LL PSI+ECA   IYTQ++AL+Y++ KV     G   N +EGR+
Sbjct: 279  DQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAG---NQKEGRS 335

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
             SILRDVF+A+VPV + NFRPKC Y AVMLRRM++A+LN D  DDKDYVGNKRLELSGQL
Sbjct: 336  KSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQL 395

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFKTM S   + ++   S+   SS  DLS  I  + IT GLER +STGN+D+K
Sbjct: 396  ISLLFEDLFKTMNSNAVELMNKT-SEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIK 454

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF+MHRKG++QVL+RLS++ +LG+MTR++PQFEK+RK SGPRALQPSQWGMLCPCDTPEG
Sbjct: 455  RFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEG 514

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGL KNLAL+THVTTD+EEGPL++LCY LGVEDL LLSGEE+H   SFLV+FNGLILG
Sbjct: 515  EACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 574

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
            KHR+P+ FA+ MRKLRR+G IGEFVS+FVNEKQ C++IASDGGRVCRPL+IADKGI R+K
Sbjct: 575  KHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIPRVK 634

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----THIEIEPF 670
            EHHMK+L DG+RSFDDFLR+GLIEYLDVNEENNALIALYE +   D      THIEIEP 
Sbjct: 635  EHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEPL 694

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            TILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R DSLLYLLVY QRPLLTT
Sbjct: 695  TILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTT 754

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI +KKYT   +KY
Sbjct: 755  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKY 814

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
                SDRI++P R   GA   Q +         LD+DG AAPG II+ +D+Y+NK++P  
Sbjct: 815  EGGYSDRIVKPQRDKDGALLKQNMR-------ALDEDGFAAPGLIIRNHDIYVNKQTPRN 867

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
            T+    S    TD  Y+ +   YKG DGET VVDRV LCSD +  L IK +IRHTRRPE+
Sbjct: 868  TKRD--SGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEV 925

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV
Sbjct: 926  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV 985

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
            SCG+FHYGSAFGEPSG+AD VE IS TLVKHGFSYNGKD++YSGI G P QAY+FMGPIY
Sbjct: 986  SCGQFHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIY 1045

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMVLDKMHAR SGPRV+LTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERL
Sbjct: 1046 YQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERL 1105

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            ++SSDP++VQVCR CGLLGYYNHKLKA  CS CKNG+N++ M++PYACKLL QELQ+MN+
Sbjct: 1106 LISSDPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNV 1165

Query: 1151 VPRLKLAEA 1159
            VPRLKL E 
Sbjct: 1166 VPRLKLTEG 1174


>gi|357138000|ref|XP_003570586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Brachypodium
            distachyon]
          Length = 1158

 Score = 1717 bits (4448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 836/1168 (71%), Positives = 966/1168 (82%), Gaps = 36/1168 (3%)

Query: 6    VEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR 65
             EG P    +P  + LAAPV+  VDKF+LLP FLKVRGLVK+H+DSFNYF+  GI+ IV+
Sbjct: 13   AEGDPDALPVPTYRSLAAPVRRPVDKFELLPAFLKVRGLVKEHIDSFNYFITKGIKNIVQ 72

Query: 66   ANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ 125
            AN+RI +  DPSI+LR+KD+R+G+PS+ VD   E + PH CRL+D TY+AP++V+IEY  
Sbjct: 73   ANNRIEARSDPSIYLRYKDIRVGEPSVQVDFRVETITPHFCRLTDRTYSAPVIVDIEYTV 132

Query: 126  GSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKV 185
            G         K + +IG +PIMLRS  CVL GKDEAELAR GECPLDPGGYF++KG EKV
Sbjct: 133  GK--THVVHRKPNFIIGYMPIMLRSYACVLNGKDEAELARYGECPLDPGGYFVVKGNEKV 190

Query: 186  LLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIM 245
            +LIQEQLSKNR+IIDTD K  + ASVTSST  VKSKTVI M+K K+YL LNQF K IPI+
Sbjct: 191  ILIQEQLSKNRIIIDTDNKKRVIASVTSSTHEVKSKTVIVMDKEKIYLQLNQFTKPIPII 250

Query: 246  VVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFG 305
            VVMKAMG++SDQE+VQMVGRDPRY  LL  SI+ECA+  IYTQ++AL+Y++ KV    F 
Sbjct: 251  VVMKAMGIQSDQEIVQMVGRDPRYGDLLYLSIQECASERIYTQQQALQYMDDKV---MFP 307

Query: 306  SPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
             P N +EGR+ ++LRDVF+A+VPV N NFR KC Y AVMLRRM++A+LN D  DDKDYVG
Sbjct: 308  GPGNVKEGRSKTLLRDVFVAHVPVENGNFREKCIYTAVMLRRMLDAILNSDTFDDKDYVG 367

Query: 366  NKRLELSGQLVSLLFEDLFKTM----ISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSIT 420
            NKRLELSGQLVSLLFEDLFKTM    +  + K  D+     +RSS  D SQ I++ D IT
Sbjct: 368  NKRLELSGQLVSLLFEDLFKTMNSFAVDRMNKNSDM-----ARSSPLDFSQLIMQQDLIT 422

Query: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480
             GLER +STGN+D+KRFKMHRKG++QVL+RLS++ +LG+MTR++PQFEK+RK SGPRALQ
Sbjct: 423  TGLERAISTGNWDIKRFKMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQ 482

Query: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540
            PSQWGMLCPCDTPEGEACGL KNLAL+THVTTD+EEGPL++LCY LGVE L LLSGEE+H
Sbjct: 483  PSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEKLSLLSGEEIH 542

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
             P SFLV+FNGLILGKHR+P+ FA  MR  R++GKIGEFVS+FVNEKQ C++IASDGGRV
Sbjct: 543  APGSFLVMFNGLILGKHRQPQRFAKSMRTFRQSGKIGEFVSIFVNEKQHCIHIASDGGRV 602

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRPL+IADKG SR+KEHHMKEL DGVRSFDDFLR+GLIEYLDVNEENNALIALYE     
Sbjct: 603  CRPLIIADKGRSRVKEHHMKELRDGVRSFDDFLRDGLIEYLDVNEENNALIALYEHLDQD 662

Query: 661  DT-----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
            D      THIEIEP TILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R DS
Sbjct: 663  DVQRSSITHIEIEPMTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADS 722

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            LLYLLVY QRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG
Sbjct: 723  LLYLLVYAQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 782

Query: 776  RCIVVKKYTAINQKYANST-SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
            RCI +KKYT   +KYAN T SDRI +P R   GA   Q +         LD+DG  APG+
Sbjct: 783  RCIAMKKYTVTTEKYANGTISDRIAKPQRDKDGALIKQNMR-------ALDEDGFVAPGQ 835

Query: 835  IIKPNDVYINKESPL---ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            II+ +D+Y+NK++P    +T G+ +     TD  Y+ +   YKG DGET VVDRV LCSD
Sbjct: 836  IIRNHDIYVNKQTPKAIPKTPGTTL-----TDRDYKDSPAVYKGVDGETTVVDRVMLCSD 890

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
             N  L IK +IRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF
Sbjct: 891  TNDKLTIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 950

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+GKMIELLGGKAGVSCGRFHYGSAFGE SG+AD V+ IS TLVKHGFSYNGKD +
Sbjct: 951  PSRMTIGKMIELLGGKAGVSCGRFHYGSAFGESSGNADHVDDISHTLVKHGFSYNGKDFL 1010

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            YSGI G PL+AYIFMGPIYYQKLKHMVLDKMHAR SGPRV+LTRQPTEGR+R+GGLR+GE
Sbjct: 1011 YSGILGHPLEAYIFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGE 1070

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLIAYGASMLIFERL++SSDP++VQVCR CGLLGYYN+KLK   CS CKNG+N++ 
Sbjct: 1071 MERDCLIAYGASMLIFERLLLSSDPYQVQVCRKCGLLGYYNYKLKTSFCSMCKNGENMAK 1130

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            M++PYACKLL QELQSMN+VPRLKL E 
Sbjct: 1131 MRMPYACKLLFQELQSMNVVPRLKLTEG 1158


>gi|168006293|ref|XP_001755844.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693163|gb|EDQ79517.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1135

 Score = 1689 bits (4373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 809/1145 (70%), Positives = 950/1145 (82%), Gaps = 24/1145 (2%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGID 75
            K+ L APVK+ VDKFQLLP FLKVRGLVKQH+DSFNYF+N  I+KI+ A  N+++ S +D
Sbjct: 12   KEGLEAPVKTAVDKFQLLPSFLKVRGLVKQHIDSFNYFINCEIKKIIHAQGNEKVTSDVD 71

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
             + +L++ D+ +G+P +  D + E + P  CRL DMTY+API V++EY +G     +   
Sbjct: 72   ANFYLKYLDIFVGEPCVEQDYIYEPITPQQCRLRDMTYSAPISVDVEYTRGKEVVGS--- 128

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
               + IGR+PIMLRS RC+L GK+EA+LA++GECPLDPGGYF++KGTEKV+LIQEQLSKN
Sbjct: 129  ---INIGRMPIMLRSSRCILAGKNEAQLAKVGECPLDPGGYFVVKGTEKVILIQEQLSKN 185

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+II TD  G++ ASVTSST   KSKT + ++  ++YL  N F   IPI+VVM+AMGMES
Sbjct: 186  RIIITTDSSGSVAASVTSSTHERKSKTNMVVKHERIYLRHNTFGDDIPIVVVMRAMGMES 245

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            DQE+VQMVGRDP+Y+ +L PS++ECA L IYT  +ALEYL  KV           R   A
Sbjct: 246  DQEIVQMVGRDPKYAGILNPSLQECAALKIYTSHQALEYLGSKV-----------RVDEA 294

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              IL  V LA+VPVH  +FR KC Y+AV++R+M+EAMLN++A+DD DYVGNKRLEL+GQL
Sbjct: 295  RDILATVVLAHVPVHQFDFRAKCIYLAVIIRKMLEAMLNREAVDDMDYVGNKRLELAGQL 354

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK M +E++K++D  LSK +RS++FD+ + I  D++T GLE  +S+GN+ VK
Sbjct: 355  LSLLFEDLFKRMNAELKKSMDATLSKANRSTQFDIIKLIRPDTLTNGLEHAISSGNWAVK 414

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM RKG+TQV++RLSFI  LGHMTR+S QFEK+RKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 415  RFKMDRKGVTQVVSRLSFIAALGHMTRISSQFEKTRKVSGPRALQPSQWGMLCPCDTPEG 474

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNL+LMTHVTTDEEE PLI LC  LGVEDL LLSGEELH+P ++LV FNG ILG
Sbjct: 475  EACGLVKNLSLMTHVTTDEEEAPLIELCTTLGVEDLSLLSGEELHSPKTYLVFFNGTILG 534

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK-QRCVYIASDGGRVCRPLVIADKGISRI 614
             HRRP  FA+V+RKLRRAGKIGEFVSV VN K QR + IASDGGRVCRPLVIADKG+SR+
Sbjct: 535  VHRRPNRFAEVLRKLRRAGKIGEFVSVHVNPKHQRNIQIASDGGRVCRPLVIADKGVSRV 594

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
            KEHHMKEL DG R+FDDFLREGL+EYLDVNEENN+LIALYEGDATPDTTHIEIEPFTILG
Sbjct: 595  KEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNSLIALYEGDATPDTTHIEIEPFTILG 654

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLL+T++IE
Sbjct: 655  VCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRMDTLLYLLVYPQRPLLSTKSIE 714

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK     +KYAN T
Sbjct: 715  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVIKKSVVPMKKYANRT 774

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
            +DRI+ P+        +QVV    L     D DG+AA GE+I+P D+Y+NK+SP++TR +
Sbjct: 775  ADRIMAPELQSSAKGGVQVVARQQLQ----DHDGIAAVGEMIRPGDIYVNKQSPIDTRNN 830

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
            + +P    DS Y+   QTYKG  GET VVD+V L S+      +K LIR TRRPE+GDKF
Sbjct: 831  VNNPMALPDSAYKRTPQTYKGAAGETAVVDKVLLTSNDENHFVVKCLIRQTRRPEVGDKF 890

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG+  G+
Sbjct: 891  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGLHNGK 950

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
            FHYGSAFGEPSGHAD V +IS TLVKHGFSY+GKD IYSGITG PLQAYIFMGPIYYQKL
Sbjct: 951  FHYGSAFGEPSGHADKVSTISATLVKHGFSYSGKDFIYSGITGSPLQAYIFMGPIYYQKL 1010

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMVLDKMHAR  GPRV+LTRQPTEGR+R GGLR+GEMERDCLIAYGASM+I ERLM+SS
Sbjct: 1011 KHMVLDKMHARARGPRVVLTRQPTEGRSREGGLRLGEMERDCLIAYGASMMILERLMISS 1070

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F++QVC  CG++GYY+HKLK  +CSTCK+GDNI++MKLPYACKLL QELQSMNIVPRL
Sbjct: 1071 DQFQIQVCTKCGMIGYYHHKLKICLCSTCKSGDNIATMKLPYACKLLFQELQSMNIVPRL 1130

Query: 1155 KLAEA 1159
             LAEA
Sbjct: 1131 TLAEA 1135


>gi|242092386|ref|XP_002436683.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
 gi|241914906|gb|EER88050.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
          Length = 1137

 Score = 1682 bits (4356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 808/1150 (70%), Positives = 944/1150 (82%), Gaps = 20/1150 (1%)

Query: 15   LPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI 74
            LP    LAAPV+  VDKF LLP FLKVRGLVK+H+DSFNYF++ GI+KIV AN+RI +  
Sbjct: 3    LPTYHSLAAPVRKPVDKFALLPAFLKVRGLVKEHIDSFNYFIDKGIKKIVEANNRIEARN 62

Query: 75   DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            DPSI+LR+ DVR+G PS+  +   E + PH+CRL+D TY+API V+I+Y  G   +    
Sbjct: 63   DPSIYLRYLDVRVGMPSIYENCNVESITPHLCRLTDRTYSAPIEVDIQYTVGK--QHVVK 120

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             +N  +IG +PIMLRS  C+L   DE ELA+ GECPLDPGGYF++KGTEKV+LIQEQLSK
Sbjct: 121  RRNKFIIGYMPIMLRSSACILNEMDEDELAKYGECPLDPGGYFVVKGTEKVILIQEQLSK 180

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NR+I+DTD KG + ASVTSST  +KSKTV+ M+KGK+YL LNQF K IPI+VVMKAMGME
Sbjct: 181  NRIIVDTDSKGRVIASVTSSTHAIKSKTVVLMDKGKIYLQLNQFTKPIPIIVVMKAMGME 240

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SDQE VQMVGRDPRY  LL PSI+ECA+  IYT+++AL+Y++ KV    +    N++EGR
Sbjct: 241  SDQEAVQMVGRDPRYGDLLFPSIQECASERIYTRQQALQYMDEKV---MYPGATNNKEGR 297

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            + SIL DVF+A+VPV + N RPKC Y AVMLRRM++A+LN D  DDKDYVGNKR ELSGQ
Sbjct: 298  SNSILHDVFIAHVPVKDGNLRPKCIYTAVMLRRMLDAILNSDTFDDKDYVGNKRFELSGQ 357

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            L+SLLFEDLFKTM S+  + ++   S  +RSS  D SQ I++D+IT GLER +STGN+D+
Sbjct: 358  LISLLFEDLFKTMNSQAVERMNKN-SDKTRSSPLDFSQLIMQDTITFGLERAISTGNWDI 416

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRF+MHRKG++QVL+RLS++ TLG+MTR++PQFEK+RK SGPRALQPSQWGMLCPCDTPE
Sbjct: 417  KRFRMHRKGVSQVLSRLSYMATLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPE 476

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGL KNLAL++H+TTD+EEGPLI LC+ LGVEDL  LS EE+H P SFLV+ NGLIL
Sbjct: 477  GEACGLTKNLALLSHITTDQEEGPLIDLCHSLGVEDLLFLSSEEIHAPGSFLVMLNGLIL 536

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            GKH+ P+     +R LRR+  IGEFVS+F+NEKQRCV+IASDGGRVCRPL+IAD GISRI
Sbjct: 537  GKHKDPQRLVIHLRNLRRSNVIGEFVSIFINEKQRCVHIASDGGRVCRPLIIADMGISRI 596

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----THIEIEP 669
             E HM +L DG   FDDFL  GLIEYLDVNEENNALIALYE     D      THIEIEP
Sbjct: 597  DETHMTKLRDGTYDFDDFLSGGLIEYLDVNEENNALIALYEHMDQDDVERSSITHIEIEP 656

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             +ILGV++GLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R DSLLYLLVY QRPLLT
Sbjct: 657  LSILGVVSGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLT 716

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIELVGYDKLGAGQNATVAVM YSGYDIEDAIVMNKSSLDRGFGRCI +KKYT +   
Sbjct: 717  TKTIELVGYDKLGAGQNATVAVMGYSGYDIEDAIVMNKSSLDRGFGRCIALKKYTVLKDN 776

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y +  SDRI++P R   G     V+   N+    LDDDG+ APG+II+ +D+Y+NK++P+
Sbjct: 777  YVDGVSDRIVKPQRDKDG-----VLMKQNMR--ALDDDGIVAPGQIIRNHDIYVNKQTPM 829

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
             T   I  P   TDS Y+ +   YKG DGET VVDRV LCSD N  L IK +IRHTRRPE
Sbjct: 830  NTSKGIGRPL--TDSCYKDSPAIYKGVDGETTVVDRVMLCSDTNDKLSIKCIIRHTRRPE 887

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAG
Sbjct: 888  VGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAG 947

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            VSCGRFHYGSAFGEPSG+AD V  IS TL+KHGFSYNGKD +YSGI G PL+AYIFMGPI
Sbjct: 948  VSCGRFHYGSAFGEPSGNADNVADISSTLIKHGFSYNGKDFLYSGILGQPLEAYIFMGPI 1007

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMVLDKMHAR SGPRV+LTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFER
Sbjct: 1008 YYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFER 1067

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSDP++VQVCR CGLLGYYNHKLK   CS CKNG+N++ M+LPYACKLL QEL +MN
Sbjct: 1068 LMLSSDPYQVQVCRKCGLLGYYNHKLKTSYCSMCKNGENMAKMRLPYACKLLFQELHAMN 1127

Query: 1150 IVPRLKLAEA 1159
            +VPRLKL E 
Sbjct: 1128 VVPRLKLTEV 1137


>gi|302790720|ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
 gi|300155103|gb|EFJ21736.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
          Length = 1386

 Score = 1631 bits (4223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 782/1160 (67%), Positives = 936/1160 (80%), Gaps = 44/1160 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPS- 77
            L APVK+ VDKFQLLP F KVRGLVKQHLDS+NYFVN  I+KI+ A  N++I S +DP+ 
Sbjct: 250  LDAPVKTAVDKFQLLPAFHKVRGLVKQHLDSYNYFVNCEIKKIIHAKGNEKITSDVDPNF 309

Query: 78   --------------IFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEY 123
                          I  RF D+ +G PS+  D + + + P  CRL DMTY+API V+IEY
Sbjct: 310  YIKYACDTFQYFTNILFRFLDIFVGTPSIEQDYIRQDITPQQCRLRDMTYSAPISVDIEY 369

Query: 124  VQGSH--TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
             +G    T K    +   VIGR+P+MLRS RC+L GK +AELA+LGECPLDPGGYF++KG
Sbjct: 370  TRGKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKSDAELAKLGECPLDPGGYFVVKG 429

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            TEKV+LIQEQLSKNR+IID+D  G++ ASVTSST   KSKT I ++  K+Y+ LN F   
Sbjct: 430  TEKVILIQEQLSKNRIIIDSDSTGSVTASVTSSTHERKSKTNIIIKHEKIYVKLNVFSDD 489

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK- 300
            +PI+VVMKAMGMESDQE++QMVG DP+++ +L PS++ECA+L +YT  +ALEYL  KV+ 
Sbjct: 490  VPIVVVMKAMGMESDQEIIQMVGTDPKFAGILAPSMQECASLGVYTTHQALEYLGTKVRV 549

Query: 301  -RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
             R         +   A  IL +VFLA+V VH  +FRPKC YVA+MLRRM+EA+L+K+ +D
Sbjct: 550  NRQWGSKQTKSKVDEARDILLNVFLAHVAVHRYDFRPKCIYVALMLRRMLEAILDKECVD 609

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+DYVGNKRLEL+GQL++LLFEDLFK   SE++  VD  LSK +R+S++D+S+ +  D +
Sbjct: 610  DRDYVGNKRLELAGQLLALLFEDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPDML 669

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            T GLE  +S+GN+ VKRF+M +KG+TQV++RLS+I  LGHMTRV+ QFEKSRK       
Sbjct: 670  TSGLENAISSGNWTVKRFRMDKKGVTQVVSRLSYIAALGHMTRVASQFEKSRK------- 722

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
                WGMLCPCDTPEGE CGL KNLALMTH+TTD+EE PLI LC  LGVED+ LLSGEE 
Sbjct: 723  ----WGMLCPCDTPEGEGCGLTKNLALMTHITTDDEEAPLIDLCTNLGVEDINLLSGEEF 778

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
            H+ N+FLV+FNG ILG HRRP+ FA +MRKLRRAGKIGEFVS+FVNEKQRC+YIASDGGR
Sbjct: 779  HSKNAFLVMFNGTILGIHRRPQQFATLMRKLRRAGKIGEFVSIFVNEKQRCIYIASDGGR 838

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            VCRP+VIAD G+SRIKEHHMKEL DG R+FDDFLREGL+EYLDVNEENNALIALYE +A 
Sbjct: 839  VCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNALIALYEKEAD 898

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
              TTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R+D+LLYL
Sbjct: 899  STTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYL 958

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            LVYPQRPLLTT++IELV YDKLGAGQNA+VAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV
Sbjct: 959  LVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCIV 1018

Query: 780  VKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
            +KK++ + +KY N T DRI+ P + G    ++            LD DG+A+ GE I   
Sbjct: 1019 LKKFSCLVRKYENRTMDRIVAPRQHGHATSQL------------LDQDGIASVGERIYDK 1066

Query: 840  DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIK 899
            D+++NKESP + + + ++P    DS YR   Q YKGP GE+ +VD+V L ++++  + IK
Sbjct: 1067 DIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIK 1126

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
              +RHTRRPELGDKFSSRHGQKGVCGTIV+Q+DFPF+ERG+CPDLIMNPHGFPSRMTVGK
Sbjct: 1127 CQVRHTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVGK 1186

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            MIELLGGKAGV  G++HYGSAFGEPSGHADTVE+IS TLVKHGFSY GKD+IYSGITGCP
Sbjct: 1187 MIELLGGKAGVQSGKYHYGSAFGEPSGHADTVEAISATLVKHGFSYCGKDLIYSGITGCP 1246

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            LQAYI+MGPIYYQKLKHMVLDKMHAR  GPRV+LTRQPTEGR+R GGLR+GEMERDCL+A
Sbjct: 1247 LQAYIYMGPIYYQKLKHMVLDKMHARAQGPRVVLTRQPTEGRSREGGLRLGEMERDCLVA 1306

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACK 1139
            YG+SMLI ERLM+SSD F+VQVC  CGLLGYY+HKLK   CS CKNG+N+++MKLPYACK
Sbjct: 1307 YGSSMLILERLMISSDQFQVQVCTNCGLLGYYSHKLKMNFCSYCKNGENMAAMKLPYACK 1366

Query: 1140 LLIQELQSMNIVPRLKLAEA 1159
            LL QELQSMNIVPRL+LAEA
Sbjct: 1367 LLFQELQSMNIVPRLQLAEA 1386


>gi|302820918|ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
 gi|300140050|gb|EFJ06779.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
          Length = 1440

 Score = 1627 bits (4214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 781/1161 (67%), Positives = 935/1161 (80%), Gaps = 52/1161 (4%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPS- 77
            L APVK+ VDKFQLLP F KVRGLVKQHLDS+NYFVN  I+KI+ A  N++I S +DP+ 
Sbjct: 310  LDAPVKTAVDKFQLLPAFHKVRGLVKQHLDSYNYFVNCEIKKIIHAKGNEKITSDVDPNF 369

Query: 78   ---------------IFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIE 122
                           I  RF D+ +G PS+  D + + + P  CRL DMTY+API V+IE
Sbjct: 370  YIKYACDTFFQYFTNILFRFLDIFVGTPSIEQDYIRQDITPQQCRLRDMTYSAPISVDIE 429

Query: 123  YVQGSH--TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            Y +G    T K    +   VIGR+P+MLRS RC+L GK +AELA+LGECPLDPGGYF++K
Sbjct: 430  YTRGKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKSDAELAKLGECPLDPGGYFVVK 489

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVK 240
            GTEKV+LIQEQLSKNR+IID+D  G+++ +V                +GK    LN F  
Sbjct: 490  GTEKVILIQEQLSKNRIIIDSDSTGSLSLAVHM--------------RGK----LNVFSD 531

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
             +PI+VVMKAMGMESDQE++QMVG DP+++ +L PS++ECA+L +YT  +ALEYL  KV+
Sbjct: 532  DVPIVVVMKAMGMESDQEIIQMVGTDPKFAGILAPSMQECASLGVYTTHQALEYLGTKVR 591

Query: 301  --RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
              R         +   A  IL +VFLA+V VH  +FRPKC YVA+MLRRM+EA+L+K+ +
Sbjct: 592  VNRQWGSKQTKSKVDEARDILLNVFLAHVAVHKYDFRPKCIYVALMLRRMLEAILDKECV 651

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+DYVGNKRLEL+GQL++LLFEDLFK   SE++  VD  LSK +R+S++D+S+ +  D 
Sbjct: 652  DDRDYVGNKRLELAGQLLALLFEDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPDM 711

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            +T GLE  +S+GN+ VKRF+M +KG+TQV++RLS+I  LGHMTRV+ QFEKSRKVSGPR+
Sbjct: 712  LTSGLENAISSGNWTVKRFRMDKKGVTQVVSRLSYIAALGHMTRVASQFEKSRKVSGPRS 771

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQWGMLCPCDTPEGE CGL KNLALMTH+TTD+EE PLI LC  LGVED+ LLSGEE
Sbjct: 772  LQPSQWGMLCPCDTPEGEGCGLTKNLALMTHITTDDEEAPLIDLCTNLGVEDINLLSGEE 831

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
             H+ N+FLV+FNG ILG HRRP+ FA +MRKLRRAGKIGEFVS+FVNEKQRC+YIASDGG
Sbjct: 832  FHSKNAFLVMFNGTILGIHRRPQQFATLMRKLRRAGKIGEFVSIFVNEKQRCIYIASDGG 891

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            RVCRP+VIAD G+SRIKEHHMKEL DG R+FDDFLREGL+EYLDVNEENNALIALYE +A
Sbjct: 892  RVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNALIALYEKEA 951

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
               TTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R+D+LLY
Sbjct: 952  DSTTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLY 1011

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            LLVYPQRPLLTT++IELV YDKLGAGQNA+VAVMSYSGYDIEDAIVMNK+SLDRGFGRCI
Sbjct: 1012 LLVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCI 1071

Query: 779  VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
            V+KK++ + +KY N T DRI+ P + G    ++            LD DG+A+ GE I  
Sbjct: 1072 VLKKFSCLVRKYENRTMDRIVAPRQHGHATSQL------------LDQDGIASVGERIYD 1119

Query: 839  NDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
             D+++NKESP + + + ++P    DS YR   Q YKGP GE+ +VD+V L ++++  + I
Sbjct: 1120 KDIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVI 1179

Query: 899  KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
            K  +RHTRRPELGDKFSSRHGQKGVCGTIV+Q+DFPF+ERG+CPDLIMNPHGFPSRMTVG
Sbjct: 1180 KCQVRHTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVG 1239

Query: 959  KMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGC 1018
            KMIELLGGKAGV  G++HYGSAFGEPSGHADTVE+IS TLVKHGFSY GKD+IYSGITGC
Sbjct: 1240 KMIELLGGKAGVQSGKYHYGSAFGEPSGHADTVEAISATLVKHGFSYCGKDLIYSGITGC 1299

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
            PLQAYI+MGPIYYQKLKHMVLDKMHAR  GPRV+LTRQPTEGR+R GGLR+GEMERDCL+
Sbjct: 1300 PLQAYIYMGPIYYQKLKHMVLDKMHARAQGPRVVLTRQPTEGRSREGGLRLGEMERDCLV 1359

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYAC 1138
            AYG+SMLI ERLM+SSD F+VQVC  CGLLGYY+HKLK   CS CKNG+N+++MKLPYAC
Sbjct: 1360 AYGSSMLILERLMISSDQFQVQVCTNCGLLGYYSHKLKMNFCSYCKNGENMAAMKLPYAC 1419

Query: 1139 KLLIQELQSMNIVPRLKLAEA 1159
            KLL QELQSMNIVPRL+LAEA
Sbjct: 1420 KLLFQELQSMNIVPRLQLAEA 1440


>gi|108708689|gb|ABF96484.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
          Length = 1039

 Score = 1509 bits (3907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1027 (71%), Positives = 845/1027 (82%), Gaps = 20/1027 (1%)

Query: 16   PDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID 75
            P  + LAAPV   VDKF LLP FLKVRGLVK+H+DSFNYF+  GIR IV+AN+RI +  +
Sbjct: 22   PTYRSLAAPVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNN 81

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            PSIFLR+  VR+G PS+ V  ++EK+ PH CRL+D TY+AP+L +IEY  G   E     
Sbjct: 82   PSIFLRYNSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYE--LKR 139

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            K + +IG +PIMLRS  CVL GKDEAELAR GECPLDPGGYFI+KGTEKV+LIQEQLSKN
Sbjct: 140  KPNFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKN 199

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+IIDTD KG + ASVTSST  +KSKTVI MEK K+YL LNQF K IPI+VVMKAMGMES
Sbjct: 200  RIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMES 259

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            DQEV QMVGRDPRY  LL PSI+ECA   IYTQ++AL+Y++ KV     G   N +EGR+
Sbjct: 260  DQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAG---NQKEGRS 316

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
             SILRDVF+A+VPV + NFRPKC Y AVMLRRM++A+LN D  DDKDYVGNKRLELSGQL
Sbjct: 317  KSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQL 376

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFKTM S   + ++   S+   SS  DLS  I  + IT GLER +STGN+D+K
Sbjct: 377  ISLLFEDLFKTMNSNAVELMNKT-SEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIK 435

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF+MHRKG++QVL+RLS++ +LG+MTR++PQFEK+RK SGPRALQPSQWGMLCPCDTPEG
Sbjct: 436  RFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEG 495

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGL KNLAL+THVTTD+EEGPL++LCY LGVEDL LLSGEE+H   SFLV+FNGLILG
Sbjct: 496  EACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILG 555

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
            KHR+P+ FA+ MRKLRR+G IGEFVS+FVNEKQ C++IASDGGRVCRPL+IADKGI R+K
Sbjct: 556  KHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIPRVK 615

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----THIEIEPF 670
            EHHMK+L DG+RSFDDFLR+GLIEYLDVNEENNALIALYE +   D      THIEIEP 
Sbjct: 616  EHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEPL 675

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            TILGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R DSLLYLLVY QRPLLTT
Sbjct: 676  TILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTT 735

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI +KKYT   +KY
Sbjct: 736  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKY 795

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
                SDRI++P R   GA   Q +         LD+DG AAPG II+ +D+Y+NK++P  
Sbjct: 796  EGGYSDRIVKPQRDKDGALLKQNMR-------ALDEDGFAAPGLIIRNHDIYVNKQTPRN 848

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
            T+    S    TD  Y+ +   YKG DGET VVDRV LCSD +  L IK +IRHTRRPE+
Sbjct: 849  TKRD--SGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEV 906

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV
Sbjct: 907  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV 966

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
            SCG+FHYGSAFGEPSG+AD VE IS TLVKHGFSYNGKD++YSGI G P QAY+FMGPIY
Sbjct: 967  SCGQFHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIY 1026

Query: 1031 YQKLKHM 1037
            YQKLKHM
Sbjct: 1027 YQKLKHM 1033


>gi|255083755|ref|XP_002508452.1| predicted protein [Micromonas sp. RCC299]
 gi|226523729|gb|ACO69710.1| predicted protein [Micromonas sp. RCC299]
          Length = 1159

 Score = 1488 bits (3851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/1152 (63%), Positives = 894/1152 (77%), Gaps = 27/1152 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGI 74
            D   L AP+K++ DKF+LLP FLKVRGLV+QH+DSFNY +N  I+KI+  +AN+++    
Sbjct: 26   DPATLNAPIKTLKDKFELLPAFLKVRGLVRQHIDSFNYLINEEIKKIIAAKANEKVTCDT 85

Query: 75   DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            DP+ +L++ ++++G+PS+  D + E++ P  CRL DMTYAAP+ V++EY +G      T 
Sbjct: 86   DPNFYLKYTNIQVGKPSVEEDFIVEEITPQQCRLRDMTYAAPVTVDVEYTRGKEIVTNTS 145

Query: 135  EKN--DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
            +     V IGRIP+MLRS RC+L GK E ELARLGECPLDPGGYF++KGTEKV+LIQEQL
Sbjct: 146  KNGVGGVTIGRIPLMLRSSRCILTGKSEEELARLGECPLDPGGYFVVKGTEKVILIQEQL 205

Query: 193  SKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            SKNR+IID D KG + ASVTSST   KSKT I ++ GK+YL  N F  +IPIMV +KAMG
Sbjct: 206  SKNRIIIDIDNKGEVGASVTSSTHERKSKTNIVVKHGKLYLRHNTFTDEIPIMVALKAMG 265

Query: 253  MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST---FGSPPN 309
             ESDQEVVQMVG D  Y++LLLPS+ EC+ L I+TQ++ALEY  GKV+ +T   +     
Sbjct: 266  CESDQEVVQMVGPDTAYASLLLPSLLECSALAIFTQQQALEYCGGKVRMATRMMYSRNKR 325

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             +   A  IL  V LA+VPV   +FR KC YVA+M+RR++ AM++   +DDKDY GNKRL
Sbjct: 326  SKVDEARDILAGVVLAHVPVPAYDFRQKCVYVAIMIRRILHAMVDPTQVDDKDYYGNKRL 385

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            EL+GQL++LLFED FK + +++++  D +LSK +R+++FD+ + I +D+++ GLE  +S+
Sbjct: 386  ELAGQLLALLFEDCFKRLNADLKRQADAVLSKSNRATQFDIIKCIRQDTLSNGLEHAISS 445

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ VKRF+M RKG+TQVL+RLSFI  LG MTR++ QFEK+RKVSGPRALQPSQWGMLCP
Sbjct: 446  GNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCP 505

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGE+CGLVKNLALMTHVTTD+EE PL SL + LGVE L LL G+ELH+P S LV  
Sbjct: 506  SDTPEGESCGLVKNLALMTHVTTDDEEEPLRSLAHVLGVEPLLLLVGQELHSPGSALVFL 565

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ILG H+ P  FA   R LRR G++GEFVSV        VYIASDGGRVCRPL+I + 
Sbjct: 566  NGHILGVHQDPARFASDFRLLRRRGRVGEFVSVHTTTGN--VYIASDGGRVCRPLLIVEN 623

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G   +K+ H+  L  G  +F+DFL +G +EYLDVNEENN+ IALYE + TP+TTH+EIEP
Sbjct: 624  GELLVKQVHLDALKAGRWTFNDFLTQGFVEYLDVNEENNSYIALYESEITPETTHLEIEP 683

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LGV AG+IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL RMD+L+YLLVYPQ+P++ 
Sbjct: 684  FTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVK 743

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+GYD+LGAGQNATVAVMSYSGYDIEDAIVMN++SLDRGFGRCIV++KY    +K
Sbjct: 744  TKTIELIGYDRLGAGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKYGCTIKK 803

Query: 790  YANSTSDRIL--RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            Y+N T DRI+   P +TGP                +LD DG+AA GE I P DVYINK+S
Sbjct: 804  YSNRTQDRIVPPTPAQTGPNGRHR-----------LLDKDGIAAVGEKISPGDVYINKQS 852

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P  TR  + +P    DS YR   Q+YKGP GE+CVVD+V L +   G   +K L+RHTRR
Sbjct: 853  PGNTRDPLPNPQAMPDSFYRPTAQSYKGPQGESCVVDKVMLTTSDEGQFNVKCLVRHTRR 912

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PE+GDKFSSRHGQKGVCGTIV+Q D PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK
Sbjct: 913  PEVGDKFSSRHGQKGVCGTIVEQSDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 972

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
            AG+  G+F YG+AFG      DTV S+SE LV+HGFSYNGKD+++ GITG PL AYIFMG
Sbjct: 973  AGLQDGKFKYGTAFG-----GDTVTSLSEVLVEHGFSYNGKDLMHCGITGEPLVAYIFMG 1027

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P+YYQKLKHMVLDKMHAR  GPRV+LTRQPTEGRAR+GGLR+GEMERDCLI YGA+MLI 
Sbjct: 1028 PVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGAAMLIL 1087

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERLM+SSD FE QVC  CGLLGY +H     +C  C +G  +S++KLPYACKLL QELQS
Sbjct: 1088 ERLMISSDQFEAQVCTNCGLLGYKHHGTGRNLCQQCADGGTVSALKLPYACKLLFQELQS 1147

Query: 1148 MNIVPRLKLAEA 1159
            MNI PRL L++A
Sbjct: 1148 MNICPRLTLSDA 1159


>gi|145341844|ref|XP_001416013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576236|gb|ABO94305.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1146

 Score = 1474 bits (3816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1155 (61%), Positives = 892/1155 (77%), Gaps = 27/1155 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGI 74
            D  K+ AP+ ++ DK++LLP FLKVRGLV+QH+DSFNY VN  I+KI+  +AN+R+    
Sbjct: 7    DPSKITAPIATLEDKYELLPAFLKVRGLVRQHIDSFNYLVNEEIKKIIHAKANERVTCDS 66

Query: 75   DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH--TEKT 132
            DP+ +L++ ++ +G+PS+  D V E++ P  CRL DMTYAAPI V++EY +G    T + 
Sbjct: 67   DPNFYLKYTNIHVGRPSVEEDYVVEEITPQQCRLRDMTYAAPITVDVEYTRGKEIVTRQA 126

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
                  VVIGRIP+MLRS RCVL GK+E ELARLGECPLDPGGYFI+KG EKV+LIQEQL
Sbjct: 127  KNGVGGVVIGRIPLMLRSSRCVLTGKNEDELARLGECPLDPGGYFIVKGVEKVILIQEQL 186

Query: 193  SKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            SKNR+II+ D KG I ASVTSST   KSKT I ++ GK YL  N F   IPIM+V+KAMG
Sbjct: 187  SKNRIIIEVDAKGEIGASVTSSTHERKSKTNIVVKHGKFYLRHNTFADDIPIMIVLKAMG 246

Query: 253  MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPND 310
            +ESDQE VQM+G +P Y+ LL P+++EC    ++T ++ALEY   KV+  ++   + P  
Sbjct: 247  LESDQEAVQMIGSEPAYAMLLGPTLQECQAAGVFTTQQALEYCANKVRVVKTHMTNRPGV 306

Query: 311  RE-GR-----AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            R  GR     A  IL  V LA+VPV + +FR KC Y+++M+RR++ AML+   +DDKDY 
Sbjct: 307  RNFGRSRVDEARDILAGVVLAHVPVTSYDFRQKCAYISIMVRRILNAMLDPTQIDDKDYY 366

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLE 424
            GNKRLEL+GQL++LLFED FK + +++++  D +LSK +R+++FD+ + I +D+++ GLE
Sbjct: 367  GNKRLELAGQLIALLFEDCFKRLNADLKRQADAVLSKANRATQFDILKCIRQDTLSNGLE 426

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
              +S+GN+ VKRF+M RKG+TQVL+RLSFI  LG MTR++ QFEK+RKVSGPRALQPSQW
Sbjct: 427  HAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQPSQW 486

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGE+CGLVKNLALMTHVTTD+EE PL  L + LGVE L  L+  E+H+P+ 
Sbjct: 487  GMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRRLAHALGVEPLTWLNAGEMHSPSG 546

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
              V+ NG +LG H +P+ F+   RKLRRAG+IGEFVSV+  +   CVYI+SDGGRVCRPL
Sbjct: 547  AHVLMNGSLLGVHAQPEAFSHAFRKLRRAGRIGEFVSVYTADG--CVYISSDGGRVCRPL 604

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I ++G   + + H+ EL DG R+F+DFLREGL+EYLDVNEENN+ IALYE +   +TTH
Sbjct: 605  IIIERGEPLLTQEHLDELKDGHRTFNDFLREGLVEYLDVNEENNSYIALYEDEVNDETTH 664

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFT+LGV AG+IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL RMD+L+YLLVYPQ
Sbjct: 665  LEIEPFTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQ 724

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ T+TIEL+GYD+LGAGQNAT+AVMSYSGYDIEDAIVMN++SLDRGFGRC V++KY+
Sbjct: 725  KPIVKTKTIELIGYDRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYS 784

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            A  +KY+N T DRI+ P       +  +  HH      +LDDDG+AA G  IKP D+Y+N
Sbjct: 785  AQVKKYSNRTMDRIVGPKDDHRANQNSR--HH------LLDDDGIAAVGGRIKPGDIYVN 836

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K++P+ TR  + +P    D+ YRS   +YKGP GE+ +VD+V L     G   IK L+R 
Sbjct: 837  KQTPVNTRDPMANPHAMPDTMYRSNPLSYKGPAGESAIVDKVLLTMTDEGQFNIKTLVRQ 896

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGVCG I+ QEDFPFSERGI PDLIMNPHGFPSRMTVGKMIELL
Sbjct: 897  TRRPEVGDKFSSRHGQKGVCGIILDQEDFPFSERGITPDLIMNPHGFPSRMTVGKMIELL 956

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
            GGKAG+  GRFH G+AFG      DTVE+I +TLV+ G+SY GKDM++ GITG  L+  +
Sbjct: 957  GGKAGLESGRFHDGTAFG-----GDTVEAIQQTLVESGYSYKGKDMLHCGITGEALEVNV 1011

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            FMGP+YYQKLKHMV DKMHAR  GPRV+LTRQPTEGRAR+GGLR+GEMERDCLI YGAS 
Sbjct: 1012 FMGPVYYQKLKHMVQDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGASQ 1071

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            LI ERLM+SSD FE QVC  CGLLG+ +H  +   C+ CK    ++++KLPYACKLL QE
Sbjct: 1072 LILERLMISSDQFEAQVCTKCGLLGFQHHITRRNACTLCKTEAEVATLKLPYACKLLFQE 1131

Query: 1145 LQSMNIVPRLKLAEA 1159
            LQSMNI PRL L EA
Sbjct: 1132 LQSMNIAPRLSLTEA 1146


>gi|303287030|ref|XP_003062804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455440|gb|EEH52743.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1197

 Score = 1464 bits (3791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/1156 (62%), Positives = 878/1156 (75%), Gaps = 33/1156 (2%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGID 75
            + KLAAPV ++ DKF+LLP FLKVRGLV+QH+DSFNY +N  IRKI+RA  N+R+    D
Sbjct: 61   RDKLAAPVNTLEDKFELLPAFLKVRGLVRQHIDSFNYLINEEIRKIIRAKANERVTCDTD 120

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH--TEKTT 133
            PS +LR+ ++ +G+P +  D + E + P  CRL DMTYAAP+ V+ EY +G    T KT 
Sbjct: 121  PSFYLRYTNIHVGKPCVEEDYIVEDITPQQCRLRDMTYAAPVTVDAEYTRGKEIVTRKTN 180

Query: 134  MEK-NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +    + IGRIP+MLRS RCVL GK E ELARLGECPLDPGGYF++KG EKV+LIQEQL
Sbjct: 181  EQGVGGITIGRIPLMLRSSRCVLTGKSEDELARLGECPLDPGGYFVVKGVEKVVLIQEQL 240

Query: 193  SKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            SKNR+IID D KG I ASVTSST   KSKT I ++ GK+YL  N FV+ +PI+V +KAMG
Sbjct: 241  SKNRIIIDVDAKGEIGASVTSSTHERKSKTNIVVKHGKLYLRHNTFVEDVPILVALKAMG 300

Query: 253  MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST------FGS 306
             ESDQEVVQ+VG DP Y+ LL+PS++EC+ L I+TQ++ALEY   KV+  +      +G 
Sbjct: 301  TESDQEVVQLVGPDPAYANLLIPSLQECSALAIFTQQQALEYCGAKVRTQSRMGGYQYGR 360

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +R   A  IL  V LA+VPV   +FR KC YVAVM+RR++ AM+++  +DDKDY GN
Sbjct: 361  NRRNRVDEARDILAGVVLAHVPVVAYDFRGKCAYVAVMIRRILHAMIDRTQIDDKDYYGN 420

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            KRLEL+GQL++LLFED FK + +++++  D +LSK +R+++FD+ + I +D+++ GLE  
Sbjct: 421  KRLELAGQLLALLFEDCFKRLNADLKRQADAVLSKSNRATQFDIIKCIRQDTLSNGLEHA 480

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +S+GN+ VKRF+M RKG+TQVL+RLSFI  LG MTR++ QFEK+RKVSGPRALQPSQWGM
Sbjct: 481  ISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQPSQWGM 540

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGE+CGLVKNLALMTHVTTD+EE PL  L + LG + L L+ G ELH P   +
Sbjct: 541  LCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRKLAFTLGTQPLSLICGAELHAPGGAI 600

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ILG H  P  FA  MR LRR GK+GEFVSV   +  R +YIASDGGRVCRPL+I
Sbjct: 601  VFLNGSILGVHSAPDRFARDMRYLRRIGKVGEFVSVHTTQGGR-LYIASDGGRVCRPLLI 659

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
               G       H+ EL  G   F+DFL+ GL+EYLDVNEEN + IALYE + T D TH+E
Sbjct: 660  VADGEPLATREHLDELKAGRWGFNDFLKRGLVEYLDVNEENISYIALYENEITRDHTHLE 719

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFT+LGV AG+IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL RMD+L+YLLVYPQ+P
Sbjct: 720  IEPFTMLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKP 779

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ T+TIEL+GYD+LGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV++KY   
Sbjct: 780  IVKTKTIELIGYDRLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLRKYATQ 839

Query: 787  NQKYANSTSDRILRP--DRTGP-GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYI 843
             +KY+N T DRI+ P   + GP G  R+            LD DG+A+ G +I P DVY+
Sbjct: 840  VKKYSNRTMDRIVAPTESQAGPTGRHRL------------LDRDGIASVGTLINPGDVYV 887

Query: 844  NKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
            NK+SP  TR  + +P    D+ YR   Q+YKGP GE+CVVD+V L     G   +K L+R
Sbjct: 888  NKQSPSNTRDPLPNPHAMPDTFYRPTPQSYKGPQGESCVVDKVMLTMTDEGVFNVKCLVR 947

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
            HTRRPE+GDKFSSRHGQKGV GTI+ Q DFPFSERGI PDLIMNPHGFPSRMTVGKM+EL
Sbjct: 948  HTRRPEVGDKFSSRHGQKGVIGTILPQRDFPFSERGITPDLIMNPHGFPSRMTVGKMLEL 1007

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            +GGKAG   GRFH G+AF       DT E I  TLV HGFSYNGKD+++ GITG PL AY
Sbjct: 1008 VGGKAGAQDGRFHDGTAFA-----GDTAEDIGATLVNHGFSYNGKDLLHCGITGEPLVAY 1062

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IFMGP+YYQKLKHMVLDKMHAR  GPRV+LTRQPTEGRAR+GGLR+GEMERDCLI YGAS
Sbjct: 1063 IFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGAS 1122

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             LI ERLM+SSD FE QVC  CGLL Y +H      C+ C++ D +S++KLPYACKLL Q
Sbjct: 1123 ALILERLMISSDQFEAQVCNKCGLLAYRHHGTGKDACAQCEDAD-VSALKLPYACKLLFQ 1181

Query: 1144 ELQSMNIVPRLKLAEA 1159
            ELQSMNI PRL L++A
Sbjct: 1182 ELQSMNICPRLTLSDA 1197


>gi|222625092|gb|EEE59224.1| hypothetical protein OsJ_11195 [Oryza sativa Japonica Group]
          Length = 1115

 Score = 1462 bits (3786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1150 (64%), Positives = 859/1150 (74%), Gaps = 121/1150 (10%)

Query: 16   PDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID 75
            P  + LAAPV   VDKF LLP FLKVRGLVK+H+DSFNYF+  GIR IV+AN+RI +  +
Sbjct: 81   PTYRSLAAPVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNN 140

Query: 76   PSIFLR-FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            PSIFLR +  VR+G PS+ V  ++EK+ PH CRL+D TY+AP+L +IEY  G   E    
Sbjct: 141  PSIFLRQYNSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYE--LK 198

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K + +IG +PIMLRS  CVL GKDEAELAR GECPLDPGGYFI+KGTEKV+LIQEQLSK
Sbjct: 199  RKPNFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSK 258

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NR+IIDTD KG + ASVTSST  +KSKTVI MEK K+YL LNQF K IPI+VVMKAMGME
Sbjct: 259  NRIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGME 318

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SDQEV QMVGRDPRY  LL PSI+ECA   IYTQ++AL+Y++ KV     G   N +EGR
Sbjct: 319  SDQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAG---NQKEGR 375

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            + SILRDVF+A+VPV + NFRPKC Y AVMLRRM++A+LN D  DDKDYVGNKRLELSGQ
Sbjct: 376  SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQ 435

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            L+SLLFEDLFKTM S   + ++   S+   SS  DLS  I  + IT GLER +STGN+D+
Sbjct: 436  LISLLFEDLFKTMNSNAVELMNKT-SEKIHSSPLDLSLHIKENIITHGLERAISTGNWDI 494

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRF+MHRKG++QVL+RLS++ +LG+MTR++PQFEK+RK SGPRALQPSQ           
Sbjct: 495  KRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQ----------- 543

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
                                        CY LGVEDL LLSGEE+H   SFLV+FNGLIL
Sbjct: 544  ----------------------------CYSLGVEDLSLLSGEEIHASGSFLVMFNGLIL 575

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            GKHR+P+ FA+ MRKLRR+G IGEFVS+FVNEKQ C++IASDGGRVCRPL+IADKGI R+
Sbjct: 576  GKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIPRV 635

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----THIEIEP 669
            KEHHMK+L DG+RSFDDFLR+GLIEYLDVNEENNALIALYE +   D      THIEIEP
Sbjct: 636  KEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEP 695

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             TILG                                   L R DSLLYLLVY QRPLLT
Sbjct: 696  LTILG-----------------------------------LFRADSLLYLLVYAQRPLLT 720

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI +KKYT   +K
Sbjct: 721  TKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEK 780

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y    SDRI++P R   GA   Q +         LD+DG AAPG II+ +D+Y+NK++P 
Sbjct: 781  YEGGYSDRIVKPQRDKDGALLKQNMR-------ALDEDGFAAPGLIIRNHDIYVNKQTPR 833

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
             T+    S    TD  Y+ +   YKG DGET VVDRV LCSD +  L IK +IRHTRRPE
Sbjct: 834  NTKRD--SGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPE 891

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS                
Sbjct: 892  VGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS---------------- 935

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
                      AFGEPSG+AD VE IS TLVKHGFSYNGKD++YSGI G P QAY+FMGPI
Sbjct: 936  ----------AFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPI 985

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMVLDKMHAR SGPRV+LTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFER
Sbjct: 986  YYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFER 1045

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L++SSDP++VQVCR CGLLGYYNHKLKA  CS CKNG+N++ M++PYACKLL QELQ+MN
Sbjct: 1046 LLISSDPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMN 1105

Query: 1150 IVPRLKLAEA 1159
            +VPRLKL E 
Sbjct: 1106 VVPRLKLTEG 1115


>gi|308799767|ref|XP_003074664.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
 gi|116000835|emb|CAL50515.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
          Length = 2569

 Score = 1462 bits (3785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/1158 (61%), Positives = 882/1158 (76%), Gaps = 31/1158 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGI 74
            D  K+ +P+ ++ DKF+LLP FLKVRGLV+QH+DSFNY VN  I+KIVRA  N+R+    
Sbjct: 35   DPSKVTSPIGTLEDKFELLPAFLKVRGLVRQHIDSFNYLVNEEIKKIVRAKANERVTCDS 94

Query: 75   DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            DP+ +L++ ++ +G+PS+  D V E++ P  CRL DMTYAAPI V++EY +G     T  
Sbjct: 95   DPNFYLKYTNIHVGRPSVEEDYVVEEITPQQCRLRDMTYAAPITVDVEYTRGKEI-VTRQ 153

Query: 135  EKNDV---VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            +KN V   VIGRIP+MLRS RCVL GK+E ELARLGECPLDPGGYFI+KG EKV+LIQEQ
Sbjct: 154  QKNGVGGIVIGRIPLMLRSSRCVLTGKNEEELARLGECPLDPGGYFIVKGVEKVILIQEQ 213

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            LSKNR+IID D KG I ASVTSST   KSKT I ++ GK+YL  N     I IM+V+KAM
Sbjct: 214  LSKNRIIIDVDNKGEIGASVTSSTHERKSKTNIVVKHGKLYLRHNTCADDIAIMIVLKAM 273

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-- 309
            GMESDQE V M+G DP Y+ LL P+++EC    I+T ++ALEY   KV+     SP    
Sbjct: 274  GMESDQEAVHMIGSDPTYAMLLAPTLQECHASGIFTMQQALEYCASKVRVVKMQSPRTQI 333

Query: 310  --------DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
                     R   A  IL  V LA+VPV   +FR KC Y+++M+RR++ A+L+   +DDK
Sbjct: 334  GGARTYGRSRIDEARDILAGVVLAHVPVVAYDFRQKCAYISIMVRRILNALLDPTQVDDK 393

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITV 421
            DY GNKRLEL+GQL++LLFED FK + +++++  D +LSK +R+++FD+ + I +D+++ 
Sbjct: 394  DYYGNKRLELAGQLIALLFEDCFKRLNADLKRQADAVLSKANRATQFDILKCIRQDTLSN 453

Query: 422  GLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            GLE  +S+GN+ VKRF+M RKG+TQVL+RLSFI  LG MTR++ QFEK+RKVSGPRALQP
Sbjct: 454  GLEHAISSGNWTVKRFRMERKGVTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQP 513

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            SQWGMLCP DTPEGE+CGLVKNLALMTHVTTD+EE PL  L + LGVE L  L+  E+H+
Sbjct: 514  SQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRRLAHALGVEPLTWLNAGEMHS 573

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601
            P    V+ NG +LG H +P+ FA   RKLRRAG++GEFVSV+  +   CVYI+SDGGRVC
Sbjct: 574  PQGAHVLMNGSLLGVHAQPEAFAHAFRKLRRAGRVGEFVSVYAADG--CVYISSDGGRVC 631

Query: 602  RPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD 661
            RPL+I ++G   + + H++EL DG R+F DFLREGL+EYLDVNEEN++ IALYE +   +
Sbjct: 632  RPLIIIERGEPLLTQEHLEELKDGHRTFTDFLREGLVEYLDVNEENDSYIALYEDEMNEE 691

Query: 662  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721
            TTH+EIEPFT+LGV AG+IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL RMD+L+YLLV
Sbjct: 692  TTHLEIEPFTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLV 751

Query: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
            YPQ+P++ T+TIEL+GYD+LGAGQNAT+AVMSYSGYDIEDAIVMN++SLDRGFGRC V++
Sbjct: 752  YPQKPIVKTKTIELIGYDRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLR 811

Query: 782  KYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV 841
            KY+   +KY+N T DRI+ P       E  +  +H      +LD DG+AA G  IKP D+
Sbjct: 812  KYSTQVKKYSNRTMDRIIGPKEDQRANENGR--YH------LLDGDGIAAVGGRIKPGDI 863

Query: 842  YINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            Y+NK+SP+ TR  + +P G  D+ YRS   +YKGP GET +VD+V L     G   IK L
Sbjct: 864  YVNKQSPINTRDPMANPHGMPDTMYRSNPLSYKGPPGETAIVDKVLLTMTDEGQFNIKTL 923

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TRRPE+GDKFSSRHGQKGVCG I+ QEDFPFSERGI PDLIMNPHGFPSRMTVGKMI
Sbjct: 924  VRQTRRPEVGDKFSSRHGQKGVCGVILDQEDFPFSERGITPDLIMNPHGFPSRMTVGKMI 983

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            ELLGGKAG+  GRFH G+AF       D+VE+I +TLV+ GFS+ GKDM++ GITG  L+
Sbjct: 984  ELLGGKAGLENGRFHDGTAFA-----GDSVEAIQQTLVEAGFSHKGKDMLHCGITGEALE 1038

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
              +FMGP+YYQKLKHMV DKMHAR  GPRV+LTRQPTEGRAR+GGLR+GEMERDCLI YG
Sbjct: 1039 VNVFMGPVYYQKLKHMVQDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYG 1098

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            AS LI ERLM+SSD FE QVC  CGLLG+ +H      C+ CK    ++++KLPYA KLL
Sbjct: 1099 ASQLILERLMISSDQFEAQVCTKCGLLGFQHHITGKNACTLCKTEAEVATLKLPYAAKLL 1158

Query: 1142 IQELQSMNIVPRLKLAEA 1159
             QELQS NI PR+ LAEA
Sbjct: 1159 FQELQSCNIAPRINLAEA 1176


>gi|218193010|gb|EEC75437.1| hypothetical protein OsI_11967 [Oryza sativa Indica Group]
          Length = 1117

 Score = 1459 bits (3778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/1150 (64%), Positives = 858/1150 (74%), Gaps = 121/1150 (10%)

Query: 16   PDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID 75
            P  + LAAPV   VDKF LLP FLKVRGLVK+H+DSFNYF+  GIR IV+AN+RI +  +
Sbjct: 83   PTYRSLAAPVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRIEARNN 142

Query: 76   PSIFLR-FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            PSIFLR +  VR+G PS+ V  ++EK+ PH CRL+D TY+AP+L +IEY  G   E    
Sbjct: 143  PSIFLRQYNSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYE--LK 200

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K + +IG +PIMLRS  CVL GKDEAELAR GECPLDPGGYFI+KGTEKV+LIQEQLSK
Sbjct: 201  RKPNFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSK 260

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NR+IIDTD KG + ASVTSST  +KSKTVI MEK K+YL LNQF K IPI+VVMKAMGME
Sbjct: 261  NRIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGME 320

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SDQEV QMVGRDPRY  LL PSI+ECA   IYT ++AL+Y++ KV     G   N +EGR
Sbjct: 321  SDQEVAQMVGRDPRYGDLLYPSIQECAFERIYTLKQALQYMDDKVMYPGAG---NQKEGR 377

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            + SILRDVF+A+VPV + NFRPKC Y AVMLRRM++A+LN D  DDKDYVGNKRLELSGQ
Sbjct: 378  SKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQ 437

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            L+SLLFEDLFKTM S   + ++   S+   SS  DLS  I  + IT GLER +STGN+D+
Sbjct: 438  LISLLFEDLFKTMNSNAVELMNKT-SEKIHSSPLDLSLHIKENIITHGLERAISTGNWDI 496

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRF+MHRKG++QVL+RLS++ +LG+MTR++PQFEK+RK SGPRALQPSQ           
Sbjct: 497  KRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQ----------- 545

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
                                        CY LGVEDL LLSGEE+H   SFLV+FNGLIL
Sbjct: 546  ----------------------------CYSLGVEDLSLLSGEEIHASGSFLVMFNGLIL 577

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            GKHR+P+ FA+ MRKLRR+G IGEFVS+FVNEKQ C++IASDGGRVCRPL+IADKGI R+
Sbjct: 578  GKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIPRV 637

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----THIEIEP 669
            KEHHMK+L DG+RSFDDFLR+GLIEYLDVNEENNALIALYE +   D      THIEIEP
Sbjct: 638  KEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEP 697

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             TILG                                   L R DSLLYLLVY QRPLLT
Sbjct: 698  LTILG-----------------------------------LFRADSLLYLLVYAQRPLLT 722

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI +KKYT   +K
Sbjct: 723  TKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEK 782

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y    SDRI++P R   GA   Q +         LD+DG AAPG II+ +D+Y+NK++P 
Sbjct: 783  YEGGYSDRIVKPQRDKDGALLKQNMR-------ALDEDGFAAPGLIIRNHDIYVNKQTPR 835

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
             T+    S    TD  Y+ +   YKG DGET VVDRV LCSD +  L IK +IRHTRRPE
Sbjct: 836  NTKRD--SGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPE 893

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS                
Sbjct: 894  VGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS---------------- 937

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
                      AFGEPSG+AD VE IS TLVKHGFSYNGKD++YSGI G P QAY+FMGPI
Sbjct: 938  ----------AFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPI 987

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMVLDKMHAR SGPRV+LTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFER
Sbjct: 988  YYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFER 1047

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L++SSDP++VQVCR CGLLGYYNHKLKA  CS CKNG+N++ M++PYACKLL QELQ+MN
Sbjct: 1048 LLISSDPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMN 1107

Query: 1150 IVPRLKLAEA 1159
            +VPRLKL E 
Sbjct: 1108 VVPRLKLTEG 1117


>gi|384253175|gb|EIE26650.1| DNA-directed RNA polymerase III, subunit 2 [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score = 1429 bits (3698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/1156 (60%), Positives = 885/1156 (76%), Gaps = 22/1156 (1%)

Query: 15   LPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVS 72
            L D  KL  P+K V DK++LLP FLKVRGLVKQH+DSFNYF+N  I+KIV A  N+++  
Sbjct: 26   LADPSKLTHPIKEVADKYELLPAFLKVRGLVKQHIDSFNYFINQEIKKIVHAKGNEKVTC 85

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH--TE 130
              DP+ F ++ D+ +G+P +  D ++  + P  CRL DMTYAAPI V++EY +G      
Sbjct: 86   DTDPNFFFKYTDIFVGRPQVEEDYITTGITPQACRLRDMTYAAPISVDVEYTRGKEIVVR 145

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            K       VVIGR+P+MLRS RCVL GK EA+LA LGECPLDPGGYF++KG EKV+LIQE
Sbjct: 146  KGKNGVGAVVIGRMPLMLRSDRCVLKGKSEAQLAELGECPLDPGGYFVVKGAEKVILIQE 205

Query: 191  QLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQM-EKGKMYLLLNQFVKKIPIMVVMK 249
            QLSKNR+IID D KG + ASVTSST   KSKT I +  KG++ L  N F + + ++ V++
Sbjct: 206  QLSKNRIIIDLDSKGQVTASVTSSTHERKSKTNIVLGRKGQLCLRHNAFTEDVNMVAVLR 265

Query: 250  AMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSP 307
            AMG+ESDQE++ +VG +P  +ALL P+++E   + ++ +++ALEYL  +VK  +  + S 
Sbjct: 266  AMGVESDQEILALVGCEPGLAALLAPTLQEAKAMGLFIRQQALEYLGSRVKAGKQQYSSR 325

Query: 308  -PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
                +   A  IL +V + ++PV   +F+ K  Y+AVM+RRM+ AML+   +DD+DY GN
Sbjct: 326  RSRSKVDEARDILANVVVCHIPVPQYDFQQKVIYMAVMMRRMIAAMLDSTLIDDRDYYGN 385

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            KRLEL+G L++LLFEDLFK M +E+++T D  LSK +R+S+FD ++ +  + I+ G+E  
Sbjct: 386  KRLELAGGLLALLFEDLFKRMNNELKRTADNTLSKANRASQFDAAKNLHVEMISQGMESA 445

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +S+GN+ ++RF+M RKG+TQVL+RLSFI  LG MTR++ QFEK+RKVSGPRALQPSQWGM
Sbjct: 446  ISSGNWTIRRFRMERKGVTQVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQWGM 505

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGE+CGLVKNLALMTHVTTDEEE PL  L + LG +   L+SG E  +    +
Sbjct: 506  LCPADTPEGESCGLVKNLALMTHVTTDEEEAPLARLAHLLGTQPATLVSGFEYSSRGVAM 565

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ILG HRRPK      R+LRRAG++GEFVS+F+  +Q  VYIASDGGRVCRPL+I
Sbjct: 566  VFLNGSILGIHRRPKRLVKEFRRLRRAGRVGEFVSIFL--QQDSVYIASDGGRVCRPLII 623

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             D+G+ R+   H  +L  G   F DFLR GL+EYLDVNEENNALIALYE +    TTH+E
Sbjct: 624  CDRGVPRVTSAHTAKLKSGEWGFSDFLRNGLVEYLDVNEENNALIALYERNCGVATTHLE 683

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFT+LGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL  MD+LLYLLVYPQRP
Sbjct: 684  IEPFTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNVMDTLLYLLVYPQRP 743

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            LLTT+TIELVG+DKLGAGQNATVAVMSYSGYDIEDAI+MN++SLDRGFGRCIV++KY  +
Sbjct: 744  LLTTKTIELVGFDKLGAGQNATVAVMSYSGYDIEDAIIMNRASLDRGFGRCIVLRKYGTV 803

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +K+ N + D ++      PG  +    H       +LD+DGLAAPGEI  P ++ INK+
Sbjct: 804  LKKHQNRSQDTVVAAPLP-PGQSKPTGRHK------LLDEDGLAAPGEIASPGEILINKQ 856

Query: 847  SPLETRGSIMSPTGQTD---SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             P+ T+  +  P G      S Y+ A  ++KGP GE+C+VD+V L ++ +G   IK L+R
Sbjct: 857  VPMSTKDPL--PHGMVSLPPSAYKPAPVSWKGPPGESCIVDKVLLTNNDDGHTVIKTLMR 914

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
            HTRRPE+GDKFSSRHGQKGV G+IV QED PFSERGICPDLIMNPHGFPSRMTVGKM+EL
Sbjct: 915  HTRRPEVGDKFSSRHGQKGVVGSIVAQEDMPFSERGICPDLIMNPHGFPSRMTVGKMLEL 974

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            +G KA V  GRFHYG+AFGE +G AD V+SIS+TLV+HGFSY+GKD + SG +G PL+A 
Sbjct: 975  IGSKAAVQSGRFHYGTAFGESTGLADNVDSISKTLVEHGFSYSGKDQLTSGSSGEPLEAL 1034

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IFMGP+YYQKLKHMVLDKMHAR  GPRV+LTRQPTEGR+R+GGLR+GEMERDCLI YGAS
Sbjct: 1035 IFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRLGEMERDCLIGYGAS 1094

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
            ML+ ERLM+SSD F+V VC  CGLLGY++  +   +C + K+ D++S++KLPYACKLL Q
Sbjct: 1095 MLLLERLMISSDQFQVHVCNHCGLLGYFDANVGCAVCPSTKSSDDMSTLKLPYACKLLFQ 1154

Query: 1144 ELQSMNIVPRLKLAEA 1159
            ELQSMNIVPRLKLAEA
Sbjct: 1155 ELQSMNIVPRLKLAEA 1170


>gi|159471568|ref|XP_001693928.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
            reinhardtii]
 gi|158277095|gb|EDP02864.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
            reinhardtii]
          Length = 1161

 Score = 1394 bits (3609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1156 (61%), Positives = 867/1156 (75%), Gaps = 26/1156 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D  +L  P+K+V DKF LLP FLKVRGLVKQHLDSFNY +N+ +RKIV AN+++    DP
Sbjct: 17   DPTRLTEPIKTVNDKFALLPAFLKVRGLVKQHLDSFNYLLNSELRKIVAANEKVTCDTDP 76

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH--TEKTTM 134
            + +L++ ++ +G PS+  D V     P  CRL D TY+API V+IEY +G     ++   
Sbjct: 77   NFYLKYTNIYVGGPSVDEDMVQVGTTPQQCRLRDATYSAPITVDIEYTRGKEIVVKRGRG 136

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
                V IGR+P+MLR  RCVLY K+EA+LA+LGECPLDPGGYFI++GTEKV+LIQEQLSK
Sbjct: 137  GVGAVSIGRMPLMLRCDRCVLYNKNEAQLAQLGECPLDPGGYFIVRGTEKVILIQEQLSK 196

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NR+IIDTD    + ASVTSST   KSKT I   KGK+YL  N F   + I VV+KAMG E
Sbjct: 197  NRIIIDTDSHNEVMASVTSSTHERKSKTNIVFSKGKIYLKHNAFQDDVNIFVVLKAMGCE 256

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDRE- 312
            SDQE VQ VG     +ALL+PS++E   L ++TQ +AL+YL GK+K S  FG     R  
Sbjct: 257  SDQEAVQAVGAA-ALAALLVPSVQEAKGLGVFTQMQALDYLGGKLKASPKFGGGDQKRRK 315

Query: 313  ---GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
                 A  +L  V L +VPV    F  K  YVAVM+RRM+ A+L+   +DD+DY GNKRL
Sbjct: 316  SKVDEARDVLAHVVLCHVPVPRYQFAQKIAYVAVMVRRMLYAVLDPACIDDRDYYGNKRL 375

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            EL+G L+SLLFEDLFK + S++++  D +LSK +R+++FD+++ I  D+IT GLE  LS+
Sbjct: 376  ELAGGLLSLLFEDLFKRLNSDIKRQADAVLSKANRATQFDVAKAIRTDTITYGLESALSS 435

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ ++RF+M RKG+TQVL+RLSFI  +G MTR++ QFEK+RKVSGPRAL PSQWGMLCP
Sbjct: 436  GNWIIRRFRMERKGVTQVLSRLSFIAAMGMMTRMTSQFEKTRKVSGPRALHPSQWGMLCP 495

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGE+CGLVKNLALMTHVTTDEEEGPLI L   LG E +  ++  E+H     LV  
Sbjct: 496  ADTPEGESCGLVKNLALMTHVTTDEEEGPLIRLLVMLGTEPITAIAPAEMHGHGGALVFL 555

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ++G HRRP       R+LRRAG +GEFV V +  +    YI+ DGGRVCRPL+I D 
Sbjct: 556  NGTLVGVHRRPHRLVREARELRRAGHLGEFVHVHL--QGDACYISCDGGRVCRPLIICDA 613

Query: 610  GISRIKEHHMKELLDGVR---SFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
            G+ R+++ H+ +L  G R    F DFL  GL+EYLDVNEEN +LIALYE D    TTH+E
Sbjct: 614  GVPRVRQEHITKLRSGERCEWGFPDFLARGLLEYLDVNEENVSLIALYEKDCNKLTTHLE 673

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFTI+GV++GLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQ+ RMDSLLYLLVYPQRP
Sbjct: 674  IEPFTIMGVVSGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQMSRMDSLLYLLVYPQRP 733

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            LLT+RTIELVG+DKLGAGQNA+VAVMSYSGYDIEDAIVMNK SLDRGFGRCIV+KKY A 
Sbjct: 734  LLTSRTIELVGFDKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKYGAS 793

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +KYAN  SDRI+ P    PG + +           +LD DG+A  G+ I P DVYIN +
Sbjct: 794  LRKYANRASDRIVAP-LPLPGQKAVAP------RFRLLDRDGIACVGDYILPGDVYINMQ 846

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGP---DGETCVVDRVALCSDKNGDLCIKFLIR 903
             P  TR  + +     D+ YR +  ++K      GE C+VD+V + ++      IK LIR
Sbjct: 847  RPSNTRDPLPA-ANMPDAFYRPSPMSWKSTPAMAGERCIVDKVQITANDESHYSIKVLIR 905

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
            HTRRPELGDKFSSRHGQKGV G IV+QEDFPFSERG+CPDLIMNPHGFPSRMTVGKMIEL
Sbjct: 906  HTRRPELGDKFSSRHGQKGVVGNIVRQEDFPFSERGVCPDLIMNPHGFPSRMTVGKMIEL 965

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            LG KA VSCGRFHYG+AFGEPS  AD VE IS TLV+HGFSY+GKD + SGITG PL+AY
Sbjct: 966  LGSKAAVSCGRFHYGTAFGEPSNLADKVEDISATLVRHGFSYSGKDFLTSGITGEPLEAY 1025

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IFMGP+YYQKLKHMVLDKMHAR  GPRV+LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS
Sbjct: 1026 IFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRLGEMERDCLIAYGAS 1085

Query: 1084 MLIFERLMVSSDPFEVQVCRVC-GLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            ML+ ERLM+SSD FEV+  RVC GLLG+++      +    +  DN++++K+PYACKLL 
Sbjct: 1086 MLLLERLMISSDQFEVRA-RVCVGLLGWWDAHRNCPVSPVDRTSDNMATIKIPYACKLLF 1144

Query: 1143 QELQSMNIVPRLKLAE 1158
            QELQSMNI+PRL+LA+
Sbjct: 1145 QELQSMNIIPRLRLAD 1160


>gi|307103979|gb|EFN52235.1| hypothetical protein CHLNCDRAFT_56318 [Chlorella variabilis]
          Length = 1155

 Score = 1373 bits (3553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1158 (58%), Positives = 871/1158 (75%), Gaps = 37/1158 (3%)

Query: 28   VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRFKDV 85
            V  K+ LLP FL+ +GL++QH+ SFN+F+ + + KI++A  N+R+    DP+ +LR+ ++
Sbjct: 9    VNQKYALLPAFLQAKGLIRQHVSSFNHFIASDLLKIIKAKGNERVTCDADPNFYLRYTNI 68

Query: 86   RIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT--EKTTMEKNDVVIGR 143
             +G+PS+  D +  +L P+ CRL D TY+API V++EY +G      K       ++IGR
Sbjct: 69   YVGRPSLEEDYIQTELTPNQCRLRDQTYSAPISVDVEYTRGKEVVIRKGKSGAGAILIGR 128

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT-- 201
            +PIMLRS RCVL GK E ELA +GECPLDPGGYF++KGTEKV+LIQEQLSKNR+IIDT  
Sbjct: 129  MPIMLRSDRCVLTGKSEEELAWVGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDTGT 188

Query: 202  ------DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
                     G + ASVTSST   KSKT I  +  ++ L  N F + + I++VM+AMG+ES
Sbjct: 189  PALAARHSHGAVVASVTSSTHERKSKTNIVSKHNRLMLKHNAFTEDVNIVIVMRAMGVES 248

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            D+EV+Q+VG +  +++LL P+++ C    +YT+++AL+YL GKVK S  G P +   G  
Sbjct: 249  DEEVLQLVGTEGPFASLLTPTLQHCKEEGVYTRQQALDYLAGKVKGS--GRPASPAGGGG 306

Query: 316  FS------------ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
            F+            IL +V L +VPV   +++ K  Y+AVM+RRM+ A L+   +DD+DY
Sbjct: 307  FTRRTRSRVDEARDILANVVLCHVPVVQFDYQQKVTYIAVMVRRMLYAKLDPSFIDDRDY 366

Query: 364  VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGL 423
             GNKRLEL+G L++LLFEDLFK M +++++  D  LSK +R+++FD+++ I  D+IT GL
Sbjct: 367  YGNKRLELAGGLLALLFEDLFKRMNADLKRQADSSLSKANRATQFDIAKCIRTDTITFGL 426

Query: 424  ERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
            E  +S+GN+ +KRF+M RKG+TQVL+RLSFI  +G MTR++ QFEK+RKVSGPRALQPSQ
Sbjct: 427  EHAISSGNWTIKRFRMERKGVTQVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQ 486

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            WGMLCP DTPEGE+CGLVKNLALMTHVTTDEEE P+  L + +GVE   L++  EL    
Sbjct: 487  WGMLCPADTPEGESCGLVKNLALMTHVTTDEEEAPIARLAHIMGVEPASLVNQSELRERG 546

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP 603
              LV  NG ILG HRRPK F    R++RR G++GEFVSV++  +   V IASDGGRVCRP
Sbjct: 547  CALVFLNGNILGVHRRPKYFVRSFREMRRRGRVGEFVSVYM--QHDTVQIASDGGRVCRP 604

Query: 604  LVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT 663
            L+I D+G+ R+K+ H++ L  G  +F+ FL  GL+EYLDVNEENN+L+ALYE D  P  T
Sbjct: 605  LIICDRGVPRVKDEHLQLLRMGKWNFNSFLHSGLLEYLDVNEENNSLVALYEADCGPRVT 664

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H+EIEPFTILGV+AGLIP+PHHNQSPRNTYQCAMGKQAMGN+AFNQL RMD+LLYLL YP
Sbjct: 665  HLEIEPFTILGVVAGLIPFPHHNQSPRNTYQCAMGKQAMGNVAFNQLNRMDTLLYLLCYP 724

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            QRPLLTT+TIELVG+D+LGAGQNATVAVMSYSGYDIEDAIVMN++SLDRGFGRCIV++KY
Sbjct: 725  QRPLLTTKTIELVGFDRLGAGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKY 784

Query: 784  TAINQKYANSTSDRILRPDRT-GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
                +KYAN T DRI+ P    GP +              +LD DG+AA GE++   ++ 
Sbjct: 785  GTSLKKYANRTQDRIVLPAAAVGPASAPRPAK------FRVLDRDGIAAAGEVLTQGEIL 838

Query: 843  INKESPLETRGSIMSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFL 901
            +NK+ P  TR  + +P    D+ YR+A  ++KG   GE CVVD+V L S+ +    +K L
Sbjct: 839  VNKQMPTNTRDPVSNPAAMPDTFYRNAPVSWKGYTGGEKCVVDKVLLTSNDDCSCVVKVL 898

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +RHTRRPELGDKFSSRHGQKGV G+I  Q D PFSERG+ PDLIMNPHGFPSRMTVGKMI
Sbjct: 899  VRHTRRPELGDKFSSRHGQKGVVGSIWSQSDMPFSERGLVPDLIMNPHGFPSRMTVGKMI 958

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            ELLG KA V  GRFHYG+AFGEP+G AD VESIS+ LV+ G+SY+GKD ++SGITG  L+
Sbjct: 959  ELLGSKAAVCTGRFHYGTAFGEPAGLADKVESISQELVEAGYSYSGKDFLHSGITGEALE 1018

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            A+IFMGP+YYQKLKHMVLDKMHAR  GPRV+LTRQPTEGR+R+GGLR+GEMERDCLI YG
Sbjct: 1019 AHIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRLGEMERDCLIGYG 1078

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            ASML+ ERLM+SSD FEVQVC  CGL+GY  H   A +C   ++ ++I+S+++PYA KLL
Sbjct: 1079 ASMLLLERLMISSDQFEVQVCTHCGLMGYKRHDGLA-VCPLLRSPEHIASLRIPYAAKLL 1137

Query: 1142 IQELQSMNIVPRLKLAEA 1159
             QELQSMNIVP+L LAEA
Sbjct: 1138 FQELQSMNIVPKLLLAEA 1155


>gi|260807868|ref|XP_002598730.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
 gi|229284004|gb|EEN54742.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
          Length = 1137

 Score = 1363 bits (3527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1163 (57%), Positives = 857/1163 (73%), Gaps = 48/1163 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            EQL   + LA+P+ ++ +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN++IVS
Sbjct: 3    EQL---ESLASPLNTIQEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKIVS 59

Query: 73   GIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
              DP+ +L++ ++ +G P +     +++ + PH CRL DMTY+API V+IEY +G+    
Sbjct: 60   DADPNFYLKYLNIYVGMPDVEEGFNITKPIAPHECRLRDMTYSAPITVDIEYTRGNQR-- 117

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +N++ IGR+PIMLRS  CVL GK  +ELA+L ECPLDPGGYF++KG EKV+LIQEQ
Sbjct: 118  --VVRNNLPIGRMPIMLRSSNCVLTGKSPSELAKLKECPLDPGGYFLVKGVEKVILIQEQ 175

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            LSKNR+I++TD+KG I+ SVTSST   K+KT +  +  K +L  N F + IPI +  KAM
Sbjct: 176  LSKNRMIVETDRKGLISCSVTSSTHERKTKTYVVQKNAKYFLKHNTFTEDIPIAIAFKAM 235

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            G+ESDQE+VQ++G D R  A + PS+EEC    ++TQ++AL ++  KV+RS +G P   R
Sbjct: 236  GVESDQEIVQLIGTDARTMAAVAPSLEECHKAQVFTQKQALRFIGVKVRRSRWGGPKRTR 295

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  +L    LA+VPV   NFR KC Y+A+M+RR+V+A   +D +DD+DY GNKRLEL
Sbjct: 296  VEEAREVLHSTILAHVPVVKFNFRLKCVYLALMVRRVVQAQA-QDRVDDRDYYGNKRLEL 354

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +GQL++LLFEDLFK   +E++K  D  + KP R+++FD+ + + +D IT GL   +STGN
Sbjct: 355  AGQLLALLFEDLFKKFNAELKKIADQTIPKP-RAAQFDIVKHMRQDQITNGLVNAISTGN 413

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + VKRFKM R G+TQVL+RLSFI  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP D
Sbjct: 414  WTVKRFKMDRAGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSD 473

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD EE P+  L + LGVED+ LLSGEEL++ +S+LV+ NG
Sbjct: 474  TPEGEACGLVKNLALMTHITTDSEEQPIQRLAFNLGVEDVHLLSGEELNSQDSYLVMLNG 533

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             ILG     +      RK+RRAG I EFVS+  N + RCV IASD GRVCRP +I   G 
Sbjct: 534  NILGVICDHQHLIRSFRKMRRAGYINEFVSICPNHEHRCVNIASDAGRVCRPYIIVTNGR 593

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT------------ 659
              +   H++EL  G R+F+DFLREGL+EYLDVNEEN+  I LYE D T            
Sbjct: 594  PMVTNRHIEELTKGYRAFEDFLREGLVEYLDVNEENDCNITLYEADITREDETTLEHLQC 653

Query: 660  ----PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                 DTTH+EIEPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+
Sbjct: 654  FVSCRDTTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGAIGYNQHNRIDT 713

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            LLYLLV+PQRP++ T+TIEL+ Y+KL AGQNATVAVMSYSGYDIEDA+++NKSS+DRGFG
Sbjct: 714  LLYLLVFPQRPMVKTKTIELIDYEKLPAGQNATVAVMSYSGYDIEDALILNKSSVDRGFG 773

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            RC+V +K     ++Y+N T DR++ P      A R  +  H      ILD DG+ APGE 
Sbjct: 774  RCLVYRKQNCTLKRYSNQTFDRVMGP--MVDAATRKPIWRHE-----ILDVDGICAPGER 826

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            ++   V +NK  P +T   + +P  Q +  Y+    TYKGP      V+ V + S++   
Sbjct: 827  VQNKQVLVNKSMPKQTMNPVQTPGQQPE--YQDVPITYKGPVDS--YVETVLVSSNQEEA 882

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              IK L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF+++GICPD+IMNPHGFPSRM
Sbjct: 883  FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFTDQGICPDIIMNPHGFPSRM 942

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK++ELL GKAGV  G+FHYG+AFG        V+ + E LV+HGF+Y GKD + SGI
Sbjct: 943  TVGKLMELLAGKAGVLEGKFHYGTAFG-----GSKVKDVCEELVQHGFNYQGKDYLTSGI 997

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG PL AYI+ GP+YYQKLKHMVLDK+HAR  GPR +LTRQPTEGR+R+GGLR+GEMERD
Sbjct: 998  TGEPLNAYIYTGPVYYQKLKHMVLDKIHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERD 1057

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CLI YGASML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK+  N+SS+K+P
Sbjct: 1058 CLIGYGASMLLLERLMISSDQFEVDVCGECGLLGY------SGWCQYCKSSRNVSSLKMP 1111

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YACKLL QELQSMNI PRLKL +
Sbjct: 1112 YACKLLFQELQSMNIAPRLKLVK 1134


>gi|443693201|gb|ELT94631.1| hypothetical protein CAPTEDRAFT_178602 [Capitella teleta]
          Length = 1134

 Score = 1360 bits (3519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1150 (58%), Positives = 850/1150 (73%), Gaps = 30/1150 (2%)

Query: 12   DEQLP-DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI 70
            DE  P +KQKLAAP+K++ +K+QLLP FLKV+GLVKQH+DSFNYF+N  I+ I++AN++I
Sbjct: 2    DELTPQEKQKLAAPIKTIEEKWQLLPAFLKVKGLVKQHIDSFNYFINVEIKNIMKANNKI 61

Query: 71   VSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             S  D + ++++ ++ +G P +     +++ ++PH CRL DMTY+API V+IEY +GS  
Sbjct: 62   TSDADQNFYMKYLNIYVGMPDVEEGFNITKPISPHECRLRDMTYSAPITVDIEYTRGSQR 121

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
                + +N++ IGR+PIMLRS  CVL GK  AELA+L ECP+DPGGYFI++G EKV+LIQ
Sbjct: 122  ----IVRNNLPIGRMPIMLRSSNCVLVGKVPAELAKLQECPIDPGGYFIVRGVEKVILIQ 177

Query: 190  EQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMK 249
            EQLSKNR+I+DTDKKGN   SVTSST   KSKT + M+  K Y+  N   + +PI + +K
Sbjct: 178  EQLSKNRMIVDTDKKGNAMCSVTSSTHERKSKTNVIMKHHKYYIQHNTLSEDLPIAIALK 237

Query: 250  AMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSP 307
            AMG+ESDQE+VQMVG +    A + P +EEC    +YTQ +AL+Y+ GKV+  R   G  
Sbjct: 238  AMGIESDQEIVQMVGSEEMVLAAMAPCLEECHRAQVYTQVQALKYMGGKVRQRRIWGGGA 297

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
               +   A  +L+   +A+VPV N NF+ K  Y A+MLRR + A  N   +DD+DYVGNK
Sbjct: 298  KKSKAEEARELLQGTIIAHVPVTNWNFKVKASYTALMLRRCILAQGNTMNVDDRDYVGNK 357

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTL 427
            RLEL+GQL+SLLFEDLFK   SE+++  D+ + KP R+++FD+ + + +D IT GL   +
Sbjct: 358  RLELAGQLLSLLFEDLFKKFNSELKRIADMTIPKP-RAAQFDIVKHMRQDQITNGLTHAI 416

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            S+GN+ +KRFKM R+G+TQVL+RLSFI  LGHMTR++ QFEK+RKVSGPR+LQPSQWGML
Sbjct: 417  SSGNWSIKRFKMDRQGVTQVLSRLSFISALGHMTRITSQFEKTRKVSGPRSLQPSQWGML 476

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP DTPEGEACGLVKNLALMTHVTTD  E  +I L + LGVED+  LSG+EL +P  +LV
Sbjct: 477  CPSDTPEGEACGLVKNLALMTHVTTDLPEESIIRLAHNLGVEDIHFLSGDELTSPLIYLV 536

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
            + NG ILG  R  +      R++RRAG + EFVS+  N   R V+IASDGGRVCRP +I 
Sbjct: 537  LLNGNILGVIREYRRLVRTFRRMRRAGYVSEFVSISPNHAHRVVHIASDGGRVCRPYIIV 596

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            + G  R+K+ H++EL  GVR F+DFL+EGL+EYLDVNEEN+  IALYE +   +TTH+EI
Sbjct: 597  ENGEPRVKDRHIQELTQGVRCFEDFLQEGLVEYLDVNEENDCFIALYESEIHKETTHLEI 656

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+YLL YPQ P+
Sbjct: 657  EPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDSLMYLLCYPQAPM 716

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            + T+TI+L+G+DK+ AGQNATVAVMSYSGYDIEDA+++NK+SLDRGFGRC+V +      
Sbjct: 717  VKTKTIDLIGFDKIPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYRNAKVAL 776

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            ++YAN T D+++ P        + Q+  H      ILD DG+ +PGE ++   + +NK  
Sbjct: 777  KRYANQTFDKVMGP--MIDAETKKQIWRHD-----ILDMDGICSPGEKVENKQLLVNKYM 829

Query: 848  PLETRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            P  T   + S  GQ     YR     YKGP      +++V + S++     IK L+R TR
Sbjct: 830  PTVTINPLQSSGGQPQQPEYRDVPLGYKGP--MPSYIEKVMISSNEEEAFIIKILLRQTR 887

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPE+GDKFSSRHGQKGVCG IV Q D PFS  GICPD+IMNPHG+PSRMTVGK+IEL+G 
Sbjct: 888  RPEIGDKFSSRHGQKGVCGLIVPQADMPFSNLGICPDIIMNPHGYPSRMTVGKLIELMGS 947

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G+FHYG+AFG      D V  +SE LVKHGF+Y GKD + SGITG PL AYIF 
Sbjct: 948  KAGVLEGKFHYGTAFG-----GDKVSDLSEVLVKHGFNYLGKDFVTSGITGEPLSAYIFF 1002

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPI+YQKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+
Sbjct: 1003 GPIFYQKLKHMVIDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLL 1062

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+K+PYACKLL QELQ
Sbjct: 1063 LERLMISSDAFEVDVCNQCGLLGY------SGWCHYCKSSSHVSSLKMPYACKLLFQELQ 1116

Query: 1147 SMNIVPRLKL 1156
            SMNIVPRL L
Sbjct: 1117 SMNIVPRLTL 1126


>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
            99-880]
          Length = 1146

 Score = 1359 bits (3517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1147 (57%), Positives = 848/1147 (73%), Gaps = 31/1147 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + LA PVK + DK++LLP FLKV+GLVKQH+DSFNYFVN  ++KI++AN+++ S +DP  
Sbjct: 24   KHLAEPVKEIEDKWKLLPAFLKVKGLVKQHIDSFNYFVNVDLQKIIKANEKVTSDVDPHF 83

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++  +R+G P  T D V+ +   PH CRL D+TY+A I V++EY +G    +  +++ 
Sbjct: 84   YLKYTGIRVGMPERTDDDVANRSYTPHECRLRDLTYSANIFVDVEYTRG----RQIVKRK 139

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            +V+IGR+PIMLRS  CVL GK+EAELAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+
Sbjct: 140  NVMIGRLPIMLRSSHCVLSGKNEAELARMKECPLDPGGYFVVKGTEKVILVQEQLSKNRI 199

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I+D DKK NI A+V SST   KSKT I ++ GK+YL  N   + IP+ + +KA+G++SD+
Sbjct: 200  IVDVDKKNNIVANVQSSTHERKSKTAIFVKNGKIYLKHNSISEDIPVAIFLKALGVQSDR 259

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR--EGR 314
            E+ Q+V G D         +IEE + L ++TQ +AL+Y+  KVK +    P   +     
Sbjct: 260  EIAQLVCGDDHDLHDTFSINIEESSRLRVFTQMQALDYIGAKVKVNRKMGPTVRKTMAEE 319

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  +L  V LA+VPV N NFR K  Y AVM+RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 320  ALEVLATVILAHVPVENLNFREKSIYAAVMIRRVLAAMSDEVQVDDRDYVGNKRLELAGQ 379

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL-SQFIVR-DSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+++   D +L KP+R+  FD+ +Q ++  D IT G  R +STGN+
Sbjct: 380  LLSLLFEDLFKKFNSDLKMNADKVLKKPNRTQEFDIFNQLVLHGDHITSGFIRAISTGNW 439

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 440  VLKRFKMDRAGITQVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 499

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  + + LGVED+ LL+G E++ PN+F+V+ NG+
Sbjct: 500  PEGEACGLVKNLALMTHITTDQEEDPIRKIAFALGVEDVNLLTGAEIYRPNTFIVLLNGV 559

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ILG  RR + F    R+LRRAG+I EFVSVFVN  Q+ V ++SDGGR+CRPL+I + G+ 
Sbjct: 560  ILGITRRVQHFVRSFRRLRRAGRISEFVSVFVNIHQKTVNLSSDGGRICRPLIIVENGVP 619

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             +K+HH+ +L+ G   FDDFL+ GL+EY+DVNEE++A IA+YE D  P TTH+EIEPFTI
Sbjct: 620  AVKQHHINDLIAGKLVFDDFLKRGLVEYVDVNEESDANIAVYEKDIIPQTTHLEIEPFTI 679

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+++L+YL+VYPQ+P++ ++T
Sbjct: 680  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIETLIYLMVYPQQPMVKSKT 739

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+GYDKL AGQNATVAVMSYSGYDIEDA+V+NKS LDRGFGRC V++KY  + ++Y N
Sbjct: 740  IELIGYDKLPAGQNATVAVMSYSGYDIEDALVLNKSGLDRGFGRCQVMRKYATMVKRYPN 799

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DR+  P    P  E        N     ++ DG+A  GE ++   +YINK++P+ T 
Sbjct: 800  GTHDRLADP----PSRES----ELWNESYDAIEADGIAGVGEPVEAGSIYINKQTPVSTG 851

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
                 P       Y+ A   YK P  +T  +D+V   + ++    IK  IR TRRPELGD
Sbjct: 852  VDAGVPGAAQTVAYKPAPMRYKSP--QTGYIDKVLFTTTESDQTLIKVNIRQTRRPELGD 909

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IVQQED PFS+ G+CPD+IMNPHGFPSRMTVGKMIELL GKAGV  
Sbjct: 910  KFSSRHGQKGVCGIIVQQEDMPFSDLGVCPDIIMNPHGFPSRMTVGKMIELLAGKAGVLD 969

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+AFG        VE +S  L+ HGF+Y+GKD + SGITG PL AYIF GPIYYQ
Sbjct: 970  GSLQYGTAFG-----GSKVEDMSRILINHGFNYSGKDYVTSGITGEPLSAYIFFGPIYYQ 1024

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV+DKMHAR  GPR  LTRQPTEGR+R+GGLR+GEMERD LI YGASML+ ERLMV
Sbjct: 1025 KLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDALIGYGASMLLLERLMV 1084

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VC  CG +GY      +G C  CK+   + +MK+PYA KLL QEL +MNI P
Sbjct: 1085 SSDIFEVHVCNECGFIGY------SGWCQFCKSSKFMKAMKIPYAAKLLFQELLAMNISP 1138

Query: 1153 RLKLAEA 1159
            RL L +A
Sbjct: 1139 RLVLEDA 1145


>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe 972h-]
 gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit 2; Short=RNA polymerase III
            subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide;
            AltName: Full=RPC130
 gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe]
 gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
          Length = 1165

 Score = 1357 bits (3513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/1151 (57%), Positives = 854/1151 (74%), Gaps = 38/1151 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KLA PV ++ DK+QLLP FLKV+GLVKQHLDS+NYFV+  ++KIV+AN+++ S ++P  
Sbjct: 38   KKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWF 97

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G P  T  D +   ++PH CRL D+TY A I V+IEY +G    K  + + 
Sbjct: 98   YLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRG----KQVVRRR 153

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            +V IGR+P+MLRS +CVL GK+E E+A L ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+
Sbjct: 154  NVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRI 213

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ + KKG   ASVTSST   KSKT +  + GK+YL  N     IPI+VV+KAMG++SD
Sbjct: 214  IVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSD 273

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS----PPNDR 311
            QE+ ++V G +  Y  L  PSIEECA L+IYT ++ALEY+  +VK +        PP++ 
Sbjct: 274  QEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEE 333

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  +L  V LA++ V N  FRPK  Y+ +M RR++ AM++   +DD+DYVGNKRLEL
Sbjct: 334  ---ALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLEL 390

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLST 429
            +GQL++LLFEDLFK   S+++  +D +L KP R+  FD  +Q  V  D IT G+ R LST
Sbjct: 391  AGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALST 450

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRFKM R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPR+LQ SQ+GMLC 
Sbjct: 451  GNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCT 510

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TTDEEE P+I L Y  G+ED+ ++SG ELH+  ++LV  
Sbjct: 511  SDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYL 570

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ILG  R P  F    RKLRR+GKI  F+ +F+N  QR V+I++DGGR+CRPL+I   
Sbjct: 571  NGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQN 630

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G+ +++  H++ L +G   F+DFL++GL+EY+DVNEEN++LI++YE D TPDTTH+EIEP
Sbjct: 631  GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLEIEP 690

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYPQ+P++ 
Sbjct: 691  FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVK 750

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+GYDKL AGQNATVA+MSYSGYDIEDA+V+NKSS+DRGFGRC V  K++ I +K
Sbjct: 751  TKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRK 810

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y N T DRI  P R     E  +VV        +++DDGLA  G  ++P  +Y+NK++P 
Sbjct: 811  YPNGTHDRIGDPQRD---PETGEVVWKHG----VVEDDGLAGVGCRVQPGQIYVNKQTPT 863

Query: 850  ETRGS--IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
                +   +  T   +S Y++   TYK P  E   +D+V L +  +    IK L+R TRR
Sbjct: 864  NALDNSITLGHTQTVESGYKATPMTYKAP--EPGYIDKVMLTTTDSDQTLIKVLMRQTRR 921

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PELGDKFSSRHGQKGVCG IVQQED PF+++GICPD+IMNPHGFPSRMTVGKMIELL GK
Sbjct: 922  PELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGK 981

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
             GV  G   YG+ FG        VE  S  LV+HG++Y+GKDM+ SGITG  L+AYIFMG
Sbjct: 982  VGVLRGTLEYGTCFG-----GTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMG 1036

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            PIYYQKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS L+ 
Sbjct: 1037 PIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 1096

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERLM+SSD  +V VC  CGLLGY       G C++C++   +  M +PYA KLL QEL S
Sbjct: 1097 ERLMISSDACDVDVCGQCGLLGY------KGWCNSCQSTREVVKMTIPYAAKLLFQELLS 1150

Query: 1148 MNIVPRLKLAE 1158
            MNIVPRL L +
Sbjct: 1151 MNIVPRLALED 1161


>gi|449523027|ref|XP_004168526.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like, partial
            [Cucumis sativus]
          Length = 750

 Score = 1357 bits (3511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/762 (85%), Positives = 700/762 (91%), Gaps = 12/762 (1%)

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
            DLFKTM+SEV+KT+D +L K SRSSRFD SQ +  + I+ GLERTLSTGN+DVKRF+MHR
Sbjct: 1    DLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLSTGNWDVKRFRMHR 60

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
            KGM+QVLARLSFI T+GH+TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV
Sbjct: 61   KGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 120

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLALMTHVTTD+EEGPLISLCYCLGVEDLELLS EELH PNSFLVIFNG ILGKHRRP+
Sbjct: 121  KNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFNGRILGKHRRPQ 180

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKE 621
             FA  MR LRRAGKIGEFVSVFVNEKQ CVYIASDGGRVCRPLVIADKG+SRIKE+HMKE
Sbjct: 181  YFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIKEYHMKE 240

Query: 622  LLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIP 681
            L DGVR+FDDFLR+GLIEYLDVNEENNALIALYEG+ATP+TTHIEIEPFTILGV+AGLIP
Sbjct: 241  LSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVVAGLIP 300

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            YPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLLTT+TIELVGYDKL
Sbjct: 301  YPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTKTIELVGYDKL 360

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
            GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV KKY+++NQKY N+T+DRI+RP
Sbjct: 361  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQKYENNTADRIVRP 420

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
            +R       MQ          ILDDDGLAAPGEII+PND+Y+NK+SP+ T+GS +   G 
Sbjct: 421  NRNEDFTGNMQ----------ILDDDGLAAPGEIIRPNDIYVNKQSPIITKGSPLP--GI 468

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             D+ YR  RQ +KG +GE  VVDRVAL +DKN  LCIKFLIR TRRPELGDKFSSRHGQK
Sbjct: 469  PDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRHGQK 528

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF
Sbjct: 529  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 588

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            GEPSGHAD V++ISETL+K GFSYNGKD +YSGITGCPLQAYIFMGPIYYQKLKHMVLDK
Sbjct: 589  GEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 648

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI+ERLM+SSDPFEVQV
Sbjct: 649  MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQV 708

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
            CRVCGLLGYYNHKLK GICS+CK GDNIS+MKLPYACKLLIQ
Sbjct: 709  CRVCGLLGYYNHKLKTGICSSCKIGDNISTMKLPYACKLLIQ 750


>gi|281207896|gb|EFA82075.1| RNA polymerase III [Polysphondylium pallidum PN500]
          Length = 1139

 Score = 1354 bits (3504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1150 (56%), Positives = 842/1150 (73%), Gaps = 30/1150 (2%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            + L D+ KL   +K + +K++L+P FLK RGLVKQH+DSFN+F+N  ++KIV+AN+++ +
Sbjct: 17   DDLYDESKLTDHIKPIEEKWKLVPAFLKCRGLVKQHIDSFNFFINVEMKKIVKANEKLTT 76

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
             +DP+ + +F ++++G P++T +   S  + P  CRL DMTY+API VN+EYV+G    K
Sbjct: 77   EVDPAFYAKFTEIQVGMPALTEENYESVSMTPQKCRLRDMTYSAPITVNLEYVRG----K 132

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + + +VVIGRIPIMLRS  CVL  K   +LA LGECPLDPGGYFI++G EKV+L  EQ
Sbjct: 133  QIVGRKNVVIGRIPIMLRSSNCVLTNKSHEQLANLGECPLDPGGYFIVRGNEKVILNHEQ 192

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            LSKNR+II+TD KG   ++VTSST   KS+T I M+ GK+YL  N F + IP+++ +K M
Sbjct: 193  LSKNRIIIETDAKGVPCSTVTSSTHERKSRTSIIMKHGKLYLKHNTFAEDIPVVIFLKGM 252

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPN 309
            G+E+DQEVVQ+VG +  +   +  S+EEC    ++TQ +AL+YL  ++K  R  +G    
Sbjct: 253  GVETDQEVVQLVGSEEIFLDAIASSLEECNKCKVHTQTQALDYLGARIKSIRKPWGMSKK 312

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             +   A  IL  V L +VPV   NFR K  YVA+M+RR++ A  ++  +DDKDY GNKRL
Sbjct: 313  SKSEEAKDILAGVVLNHVPVRRYNFRLKVIYVALMIRRIIIATKDRSTLDDKDYYGNKRL 372

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            ELSGQL+SLLFEDLFK  ++E++K  D  + KP+R+  FD +  I  +++T G    +S+
Sbjct: 373  ELSGQLISLLFEDLFKKFLAELKKATDQAILKPNRAMVFDFASIIRTETLTNGFVHAISS 432

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            G +++KRFKM R G+TQVL+RLSFI  LG MTR+  QFEK+RK+SGPR+LQPSQWGMLCP
Sbjct: 433  GQWNLKRFKMERSGVTQVLSRLSFISALGMMTRIQSQFEKTRKISGPRSLQPSQWGMLCP 492

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKN A MTHVTTDE EGPL+ L Y LGV+D+ L++GEEL++  +FLV  
Sbjct: 493  SDTPEGEACGLVKNFAQMTHVTTDEPEGPLLRLAYNLGVQDILLITGEELNSRTAFLVFL 552

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG I+G H  P  F + +RK+RRAG+I EF+S+  NE  + V IA DGGR+CRP++I + 
Sbjct: 553  NGQIIGIHNSPTLFVNTLRKMRRAGRIREFISICKNEAHKTVSIACDGGRLCRPMIIVEN 612

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G  R+++ H++EL DG+R+FDDF+REGLIEYLDVNEEN++ +A  E      TTH+EIEP
Sbjct: 613  GRPRVQQFHIEELKDGLRTFDDFIREGLIEYLDVNEENDSFLAWNESAVNKTTTHMEIEP 672

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LG ++ LIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLVYPQRP+  
Sbjct: 673  FTLLGCVSALIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLSRIDTLLYLLVYPQRPMCQ 732

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            TRT+ELV Y KL AG NATVAVMSYSGYDIEDA+VMNK+SLDRGFGRCIV KK  +  +K
Sbjct: 733  TRTLELVNYVKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVFKKQVSAVKK 792

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            YAN T+DRI+ P+       +            +LD+DG+A PGE+ +   + INK SP+
Sbjct: 793  YANQTADRIIPPNAETSRQPK----------FALLDEDGIAKPGELAQKGQILINKYSPI 842

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
             T   + +     DS Y+S+   YK  +     VD+V L +  +  L IK L+R TRRPE
Sbjct: 843  NTVDIVANSDKIPDSGYKSSYTAYKYEN--PAFVDKVMLTTGDDDQLLIKLLMRSTRRPE 900

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            LGDKFSSRHGQKGVCG IV+QED PF++ GICPD+IMNPHGFPSRMT+GKMIELL GKAG
Sbjct: 901  LGDKFSSRHGQKGVCGIIVKQEDMPFTDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAG 960

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            V  G F YG+ FG      D VE IS+ L+  GFSY GKD + SG+TG PLQ +IF GPI
Sbjct: 961  VLRGGFGYGTCFG-----GDKVEDISKVLISKGFSYGGKDYVTSGVTGEPLQCFIFFGPI 1015

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            +YQKLKHMV+DKMHAR  GP V LTRQPTEGRAR GGLR+GEMERDCLI YGAS LI ER
Sbjct: 1016 FYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMER 1075

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD F V  C+ CG LGY       G C  CK+   +S++++PYACKLL QELQ+MN
Sbjct: 1076 LMISSDRFTVYACKKCGFLGY------EGWCQYCKSTLQVSTLQIPYACKLLFQELQAMN 1129

Query: 1150 IVPRLKLAEA 1159
            IVP+LKL +A
Sbjct: 1130 IVPKLKLEDA 1139


>gi|449481884|ref|XP_002196633.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Taeniopygia
            guttata]
          Length = 1130

 Score = 1350 bits (3493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1142 (57%), Positives = 838/1142 (73%), Gaps = 28/1142 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++ AAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 12   EQAAAPVNTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 71

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 72   YLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 127

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 128  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 187

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI ++ KAMG+ESDQ
Sbjct: 188  IVEADRKGTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKAMGVESDQ 247

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDREGRAF 316
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R   +G P   +   A 
Sbjct: 248  EIVQMIGTEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEAR 307

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             +L    L +V V   NFR KC Y AVM+RR++ A   ++ +DD+DY GNKRLEL+GQL+
Sbjct: 308  ELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQ-GENKVDDRDYYGNKRLELAGQLL 366

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +KR
Sbjct: 367  SLLFEDLFKKFNSELKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 425

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            FKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 426  FKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 485

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG 
Sbjct: 486  ACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGV 545

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
             R  +   +  R LRRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    +  
Sbjct: 546  IRDHQKLVNTFRILRRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKKQKPAVTN 605

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             HM+EL  G R+F+DFL EGL+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV 
Sbjct: 606  KHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYENTINKDTTHLEIEPFTLLGVC 665

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+
Sbjct: 666  AGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELI 725

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D
Sbjct: 726  DFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFD 785

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            +++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  + 
Sbjct: 786  KVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQTPLE 838

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              +     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSS
Sbjct: 839  GSSVPQQPQYKDVPVTYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSS 896

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFH
Sbjct: 897  RHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFH 956

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            YG+AFG        V+ + E L++HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKH
Sbjct: 957  YGTAFG-----GSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1011

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD 
Sbjct: 1012 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1071

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL
Sbjct: 1072 FEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1125

Query: 1157 AE 1158
            A+
Sbjct: 1126 AK 1127


>gi|327272386|ref|XP_003220966.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Anolis
            carolinensis]
          Length = 1132

 Score = 1350 bits (3493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1142 (57%), Positives = 838/1142 (73%), Gaps = 28/1142 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN++I S  DP  
Sbjct: 14   EQLAAPVNTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + +GR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPVGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T I +++G+ YL  N   + IPI ++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNITVKQGRFYLKHNTLSEDIPIAIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDREGRAF 316
            E+VQM+G +    A   PS+EEC    I+TQ +AL+YL  KV+R   +G P   +   A 
Sbjct: 250  EIVQMIGTEEHVMAAFAPSLEECQKAQIFTQMQALKYLGNKVRRQRMWGGPKKTKMEEAR 309

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             +L    LA+VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL+
Sbjct: 310  ELLATTILAHVPVKEFNFRSKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLL 368

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +KR
Sbjct: 369  SLLFEDLFKKFNSELKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 427

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            FKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 428  FKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 487

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG 
Sbjct: 488  ACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGV 547

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
             R  +      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + E
Sbjct: 548  IRDHQKLVYTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQTPAVTE 607

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV 
Sbjct: 608  KHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEQTINKDTTHLEIEPFTLLGVC 667

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQRP++ T+TIEL+
Sbjct: 668  AGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELI 727

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D
Sbjct: 728  EFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFD 787

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            +++ P      A    +  H      ILD DG+ +PGE ++   V +NK  P  T+  + 
Sbjct: 788  KVMGP--MLDAATHKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQTPLE 840

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              +     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSS
Sbjct: 841  GSSVPQQPQYKDVPVTYKG--ATDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSS 898

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF + GICPD+IMNPHG+PSRMTVGK+IELL GKAGV  GRFH
Sbjct: 899  RHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFH 958

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            YG+AFG        V+ + E L+++G++Y GKD + SGITG PL+AYI+ GP+YYQKLKH
Sbjct: 959  YGTAFG-----GSKVKDVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1013

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD 
Sbjct: 1014 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1073

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL
Sbjct: 1074 FEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1127

Query: 1157 AE 1158
            ++
Sbjct: 1128 SK 1129


>gi|363727935|ref|XP_416307.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gallus
            gallus]
          Length = 1132

 Score = 1349 bits (3491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1142 (57%), Positives = 838/1142 (73%), Gaps = 28/1142 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++ AAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   ERAAAPVSAVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI ++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDREGRAF 316
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R   +G P   +   A 
Sbjct: 250  EIVQMIGTEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEAR 309

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             +L    L +V V   NFR KC Y AVM+RR++ A   ++ +DD+DY GNKRLEL+GQL+
Sbjct: 310  ELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQ-GENKVDDRDYYGNKRLELAGQLL 368

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +KR
Sbjct: 369  SLLFEDLFKKFNSELKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 427

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            FKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 428  FKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 487

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG 
Sbjct: 488  ACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGV 547

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
             R  +   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    +  
Sbjct: 548  IRDHQKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKKQKPAVTN 607

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             HM+EL  G R+F+DFL EGL+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV 
Sbjct: 608  KHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVC 667

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+
Sbjct: 668  AGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELI 727

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D
Sbjct: 728  DFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFD 787

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            +++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  + 
Sbjct: 788  KVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQTPLE 840

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              +     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSS
Sbjct: 841  GSSVPQQPQYKDVPVTYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSS 898

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFH
Sbjct: 899  RHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFH 958

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            YG+AFG        V+ + E L++HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKH
Sbjct: 959  YGTAFG-----GSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1013

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD 
Sbjct: 1014 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1073

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL
Sbjct: 1074 FEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1127

Query: 1157 AE 1158
            A+
Sbjct: 1128 AK 1129


>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1160

 Score = 1347 bits (3485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1152 (57%), Positives = 851/1152 (73%), Gaps = 40/1152 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL  PV ++ DK++LLP FLKV+GLVKQHLDS+NYFV+  ++KIV AN +I S ++P  
Sbjct: 33   KKLTDPVPTIEDKWELLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVEANQKITSDVEPWF 92

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+GQP  T +D +   ++PH CRL D+TY A I V+IEY +G    +  + + 
Sbjct: 93   YLKYLDIRVGQPVRTDLDAIQHSISPHECRLRDLTYGANIFVDIEYTRG----RQVVRRR 148

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            +V IGR+P+MLRS +CVLYGK E ELA L ECPLDPGGYF++KGTEKV+L+QEQLSKNR+
Sbjct: 149  NVPIGRMPVMLRSNKCVLYGKSEKELAALNECPLDPGGYFVVKGTEKVILVQEQLSKNRI 208

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ +  K    ASVTSST   KSKT +  + G++Y+  N   + IPI++ +KAMG++SD
Sbjct: 209  IVEAEPSKEMWQASVTSSTHERKSKTYVVTKNGRLYMKHNSVNEDIPIVIALKAMGLQSD 268

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS----PPNDR 311
            +E+ ++V G +  Y  L  PS+EE A L++YT E+AL Y+   VK +        PP++ 
Sbjct: 269  REIFELVAGSEANYQDLFAPSVEEAAKLNVYTTEQALNYIGSHVKVNRRAGAARLPPHEE 328

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  +L  V LA++ V N +FRPK  YVA+M RR++ AM++   +DD+DYVGNKRLEL
Sbjct: 329  ---ALEVLAAVVLAHISVVNLDFRPKAVYVAMMARRVLMAMVDPSQVDDRDYVGNKRLEL 385

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLST 429
            +GQL++LLFEDLFK   S+++  +D +L KP+R+  FD  +Q  +  D IT G+ R LST
Sbjct: 386  AGQLLALLFEDLFKKFNSDLKLNIDKVLKKPNRTQEFDAYNQLSMHGDHITQGMVRALST 445

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRFKM R G+T VL+RLSFI  LG MTR++ QFEK+RKVSGPR+LQPSQ+GMLC 
Sbjct: 446  GNWSLKRFKMERAGVTHVLSRLSFISALGMMTRITSQFEKTRKVSGPRSLQPSQFGMLCT 505

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TTDEEEGPLI L Y  GVED+  ++G E+   +S+LV  
Sbjct: 506  SDTPEGEACGLVKNLALMTHITTDEEEGPLIRLAYAFGVEDVHTVTGREILAQDSYLVYI 565

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ILG  R P  F    R+LRR+G+I  FV +F+NE QR V+I++DGGR+CRPL++ + 
Sbjct: 566  NGSILGITRYPSRFVSCFRRLRRSGRISPFVGIFINEHQRAVFISADGGRICRPLIVVEN 625

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G+ R+   H+++L +G   F+DFL+ G +EY+DVNEEN++LIA+YE D  PDTTH+EIEP
Sbjct: 626  GLPRVTNEHIRKLKNGEMVFEDFLKAGYVEYVDVNEENDSLIAVYEKDIAPDTTHLEIEP 685

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FTILG +AG+IPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL+VYPQ+P++ 
Sbjct: 686  FTILGAVAGVIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLQRIDTLLYLMVYPQQPMVK 745

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+GYDKL AGQNA VA+MSYSGYDIEDA+V+NK+SLDRGFGRC V  K++AI +K
Sbjct: 746  TKTIELIGYDKLPAGQNAMVAIMSYSGYDIEDALVLNKASLDRGFGRCQVFHKHSAIIRK 805

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y N T DRI  P R     E  +V+        IL+DDGLA  G  ++   VYINK++P 
Sbjct: 806  YPNGTHDRIGDPQRD---PENGKVIWKHK----ILEDDGLAGVGCQVQSGQVYINKQTPT 858

Query: 850  ETRGSIMSPTGQ---TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
                + ++  GQ   T+S YR+   TYK P  E   +D+V L +       +K L R TR
Sbjct: 859  NALDNTIA-LGQPQTTESGYRATPMTYKAP--EPAYIDKVMLTNSDADQTLVKVLTRQTR 915

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPELGDKFSSRHGQKGVCG I+QQED PF++ GICPD+IMNPHGFPSRMTVGKMIELL G
Sbjct: 916  RPELGDKFSSRHGQKGVCGVIIQQEDMPFNDIGICPDIIMNPHGFPSRMTVGKMIELLSG 975

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G   YG+ FG        VE +S  LV+HG++Y+GKDM+ SGITG  L+AYIF 
Sbjct: 976  KAGVLRGTLEYGTCFG-----GSRVEDMSRILVEHGYNYSGKDMLTSGITGEQLEAYIFF 1030

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS L+
Sbjct: 1031 GPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLL 1090

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD FEV VC  CGLLGY       G C++C++  ++  M +PYA KLL QEL 
Sbjct: 1091 LERLMLSSDAFEVDVCENCGLLGY------KGWCNSCESSKHVVKMTIPYAAKLLFQELM 1144

Query: 1147 SMNIVPRLKLAE 1158
            SMNI+PRL L +
Sbjct: 1145 SMNIIPRLALED 1156


>gi|73969955|ref|XP_531760.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Canis lupus
            familiaris]
          Length = 1133

 Score = 1346 bits (3483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Danio rerio]
          Length = 1130

 Score = 1346 bits (3483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1141 (57%), Positives = 835/1141 (73%), Gaps = 28/1141 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            Q+LAAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN++I S  DP  
Sbjct: 12   QQLAAPVDTVEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMW 71

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 72   YLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 127

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK   E ++L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 128  ALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRI 187

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I+D D+KG + ASVTSST   KS+T + +++G+ YL  N   +  PI ++ KAMG+ESDQ
Sbjct: 188  IVDQDRKGTVGASVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIFKAMGVESDQ 247

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDREGRAF 316
            E+VQM+G +    A   PS+EEC    I+TQ +AL Y+  KV+R   +G P   +   A 
Sbjct: 248  EIVQMIGTEEHVMAAFAPSLEECQKAQIFTQTQALRYIGNKVRRQRMWGGPKKTKMEEAR 307

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             +L    L +VPV   NFR KC Y+AVM+RR++ A    + +DD+DY GNKRLEL+GQL+
Sbjct: 308  ELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLL 366

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            SLLFEDLFK   SE++K  D I+ K  R+++FD+ + + +D IT G+   +STGN+ +KR
Sbjct: 367  SLLFEDLFKKFNSELKKIADQIIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 425

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            FKM R+G+TQVL+RLSFI  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 426  FKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 485

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLALMTH+TTD E+GP+I L + LGVED+ LL GEEL  P  FLV  NG ILG 
Sbjct: 486  ACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPTVFLVFLNGNILGV 545

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
             R  +      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I   G   +K 
Sbjct: 546  IRDHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKNGKPAVKN 605

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             H++EL  G R+F+DFL E L+EYLDVNEEN+  IALYE   + DTTH+EIEPFT+LGV 
Sbjct: 606  KHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVC 665

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQRP++ T+TIEL+
Sbjct: 666  AGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELI 725

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D
Sbjct: 726  DFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFD 785

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            +++ P        R  +  HS     ILD DG+ +PGE ++   V +NK  P  T+  + 
Sbjct: 786  KVMGP--MLDAETRKPIWRHS-----ILDADGICSPGEKVENKQVLVNKSMPTVTQTPLE 838

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
                    +YR    +YKG       +++V + S+      +K L+R TRRPE+GDKFSS
Sbjct: 839  GSAQPGQPQYREVPVSYKG--ATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSS 896

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF + GICPD+IMNPHG+PSRMTVGK+IELL GKAGV  GRFH
Sbjct: 897  RHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFH 956

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            YG+AFG        V+ + E L+++G++Y GKD + SGITG PL+AYI+ GP+YYQKLKH
Sbjct: 957  YGTAFG-----GSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1011

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD 
Sbjct: 1012 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1071

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL
Sbjct: 1072 FEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1125

Query: 1157 A 1157
            A
Sbjct: 1126 A 1126


>gi|126339649|ref|XP_001365927.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Monodelphis
            domestica]
          Length = 1133

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 838/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +++AAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQVAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T I +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNIAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKMEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
            E HM EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  EKHMDELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
               +     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSSVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+F
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|300795995|ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus]
 gi|296487427|tpg|DAA29540.1| TPA: polymerase (RNA) III (DNA directed) polypeptide B [Bos taurus]
          Length = 1133

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|417405955|gb|JAA49663.1| Putative rna polymerase i second largest subunit [Desmodus rotundus]
          Length = 1133

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 838/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  +ALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNVALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
               T     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSTVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|332241688|ref|XP_003270010.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Nomascus leucogenys]
          Length = 1133

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|149742988|ref|XP_001499030.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Equus
            caballus]
          Length = 1133

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|403275974|ref|XP_003929693.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Saimiri
            boliviensis boliviensis]
          Length = 1133

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 836/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+   +SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGKCGLLGY------SGWCHFCKSSRQVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|395538371|ref|XP_003771156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Sarcophilus
            harrisii]
          Length = 1174

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1143 (57%), Positives = 839/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +++AAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 55   EQVAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 114

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 115  YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 170

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 171  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 230

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T I +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 231  IVEADRKGTVGASVTSSTHEKKSRTNIAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 290

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 291  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKMEEA 350

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 351  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 409

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 410  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 468

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 469  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 528

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 529  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 588

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 589  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 648

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
            + HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 649  DKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 708

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 709  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 768

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 769  IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 828

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 829  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 881

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
               +     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 882  EGSSVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 939

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+F
Sbjct: 940  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKF 999

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 1000 HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1054

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1055 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1114

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1115 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1168

Query: 1156 LAE 1158
            L++
Sbjct: 1169 LSK 1171


>gi|402887513|ref|XP_003907136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Papio anubis]
          Length = 1133

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|238908503|ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo sapiens]
 gi|388454304|ref|NP_001253862.1| DNA-directed RNA polymerase III subunit RPC2 [Macaca mulatta]
 gi|114646699|ref|XP_001161567.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 3
            [Pan troglodytes]
 gi|301784547|ref|XP_002927687.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Ailuropoda melanoleuca]
 gi|395744767|ref|XP_003778156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Pongo abelii]
 gi|397525258|ref|XP_003832591.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Pan paniscus]
 gi|29428029|sp|Q9NW08.2|RPC2_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 127.6 kDa
            polypeptide; AltName: Full=DNA-directed RNA polymerase
            III subunit B
 gi|28277230|gb|AAH46238.1| Polymerase (RNA) III (DNA directed) polypeptide B [Homo sapiens]
 gi|119618186|gb|EAW97780.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_a
            [Homo sapiens]
 gi|158256702|dbj|BAF84324.1| unnamed protein product [Homo sapiens]
 gi|355564641|gb|EHH21141.1| hypothetical protein EGK_04143 [Macaca mulatta]
 gi|355786484|gb|EHH66667.1| hypothetical protein EGM_03706 [Macaca fascicularis]
 gi|380814556|gb|AFE79152.1| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Macaca
            mulatta]
 gi|410213674|gb|JAA04056.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410252446|gb|JAA14190.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410301480|gb|JAA29340.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410336371|gb|JAA37132.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
          Length = 1133

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|426225175|ref|XP_004006743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Ovis aries]
          Length = 1133

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVSLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|300798312|ref|NP_001178807.1| DNA-directed RNA polymerase III subunit RPC2 [Rattus norvegicus]
          Length = 1133

 Score = 1344 bits (3479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1143 (57%), Positives = 836/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EELAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            LA+
Sbjct: 1128 LAK 1130


>gi|410907712|ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Takifugu rubripes]
          Length = 1132

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1141 (57%), Positives = 838/1141 (73%), Gaps = 28/1141 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            Q+LAAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN++I S  DP  
Sbjct: 14   QELAAPVNTVAEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK   E A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPMEFAKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I+D D+KG + ASVTSST   KS+T + +++G+ YL  N   +  PI ++ K MG+ESDQ
Sbjct: 190  IVDQDRKGAVGASVTSSTHEKKSRTNMIVKQGRFYLRHNTLSEDAPIAIIFKGMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDREGRAF 316
            E+VQM+G +    A   PS+EEC    I+TQ +AL YL  KV+R   +G P   +   A 
Sbjct: 250  EIVQMIGTEDYVMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMWGGPKKTKMEEAR 309

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             +L  + L +VPV   NFR KC Y+AVM+RR++ A    + +DD+DY GNKRLEL+GQL+
Sbjct: 310  ELLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQ-GGNKVDDRDYYGNKRLELAGQLL 368

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            SLLFEDLFK   SE++K  D I+ K  R+++FD+ + + +D IT G+   +STGN+ +KR
Sbjct: 369  SLLFEDLFKKFNSELKKIADQIIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKR 427

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            FKM R+G+TQVL+RLSFI  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 428  FKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 487

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLALMTH+TTD E+GP+I L + LGVED+ LL GEEL  P+ F+V  NG ILG 
Sbjct: 488  ACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPSVFIVFLNGNILGV 547

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
             R  +      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  KG   +K 
Sbjct: 548  IRDHQKLVGTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKN 607

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             H+++L  G R+F+DFL +GL+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV 
Sbjct: 608  KHIEDLSQGYRNFEDFLHDGLVEYLDVNEENDCQIALYEHMIHKDTTHLEIEPFTLLGVC 667

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQRP++ T+TIE++
Sbjct: 668  AGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIEII 727

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             ++KL AGQNATVAVMSYSGYDIEDA+++NK+SLDRGFGRC+V K      ++Y N T D
Sbjct: 728  EFEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNSKCTLRRYTNQTFD 787

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            +++ P      A R  +  H+     ILD DG+ +PGE ++   V +NK  P  T+  + 
Sbjct: 788  KVMGP--MLDAATRKPIWRHN-----ILDADGICSPGERVENKQVLVNKSMPTVTQTPLE 840

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              T     +YR     YKG       +++V + S+      IK L+R TRRPE+GDKFSS
Sbjct: 841  GSTQTGQPQYRDVPICYKG--STDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSS 898

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF + GICPD+IMNPHG+PSRMTVGK+IELL GKAGV  GRFH
Sbjct: 899  RHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFH 958

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            YG+AFG        V+ + E L++HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKH
Sbjct: 959  YGTAFG-----GSKVKDVCEDLIRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1013

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD 
Sbjct: 1014 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1073

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL
Sbjct: 1074 FEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1127

Query: 1157 A 1157
            +
Sbjct: 1128 S 1128


>gi|395819924|ref|XP_003783328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Otolemur
            garnettii]
          Length = 1133

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVIAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|449544049|gb|EMD35023.1| hypothetical protein CERSUDRAFT_116535 [Ceriporiopsis subvermispora
            B]
          Length = 1145

 Score = 1343 bits (3477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/1149 (57%), Positives = 841/1149 (73%), Gaps = 39/1149 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I+RAN+++ S +DP  +L
Sbjct: 26   LTDPIKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILRANNKVTSDVDPRFWL 85

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ IG P  T  D V + + PH CRL D TY+APILV I+Y +G    KT + + +V
Sbjct: 86   KYTDINIGFPDRTDADAVDKSVTPHECRLRDTTYSAPILVTIQYTRG----KTVVRRQNV 141

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGRIPIMLRS +CVL G+ EA+LAR+ ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+I+
Sbjct: 142  NIGRIPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV 201

Query: 200  DTD-KKGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            + D  KG + AS TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G++SD+
Sbjct: 202  EIDPTKGIVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDK 261

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y +   P++EE A L +YT+ +ALEY+  +VK  R   G P       
Sbjct: 262  EILLLTAGNHEAYKSAFSPNLEEAAKLGVYTRHQALEYIGSRVKVNRKVVG-PRRPAWEE 320

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPVH  +FR K  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 321  ALEALATIVLAHVPVHGLDFRSKAIFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQ 380

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD---LSQFIVRDSITVGLERTLSTGN 431
            L++LLFEDLFKT  + ++  +D +L KPSR+S FD     QF   D IT G  R +STGN
Sbjct: 381  LLALLFEDLFKTFNANLKSAIDKVLKKPSRTSEFDAFNTMQF-QGDHITSGFVRAISTGN 439

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP D
Sbjct: 440  WSLKRFKMDRAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 499

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD EE P+I + + LGVED+ + +G E++ PN+F+V  NG
Sbjct: 500  TPEGEACGLVKNLALMTHITTDVEEEPIIRIAFMLGVEDISVATGTEIYGPNTFVVNVNG 559

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F    RKLRRAG+  EFVS ++N   R V IASDGGR+CRP++I + G 
Sbjct: 560  TIIGLTRYPARFVTNFRKLRRAGRFSEFVSAYINHHHRTVLIASDGGRICRPMIIVENGR 619

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             R+   H  +L  G+ +FDDFLR+GL+EYLDVNEEN++ IALYE D  P TTH+EIEPFT
Sbjct: 620  PRVTSDHTLQLKKGLLTFDDFLRKGLVEYLDVNEENDSYIALYERDIVPATTHLEIEPFT 679

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL VYPQ+P++ T+
Sbjct: 680  LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTK 739

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYD+L AGQNATVAVMSYSGYDIEDA++ NK+SLDRG+GRC V++K T + +KY 
Sbjct: 740  TIELIGYDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRKNTTLIRKYP 799

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DR+       P  +  Q+    +++ L    DGLA  GE + P DVYINK++P  T
Sbjct: 800  NGTFDRLA----DAPADDNGQIQKKYDIIQL----DGLAGVGERVDPGDVYINKQTP--T 849

Query: 852  RGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
              +  S TGQ  +  Y++A  TYK P      +D+V +   +N    IK LIR TRRPEL
Sbjct: 850  NANDNSFTGQAATVPYKNAPMTYKSP--VAGYIDKVMITDTENDQTLIKVLIRQTRRPEL 907

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV
Sbjct: 908  GDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGV 967

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+  YG+AFG        VE +S  L+++GFSY+GKDM+ SGITG P++AY++ GPIY
Sbjct: 968  LAGKLQYGTAFG-----GSKVEDMSRILIENGFSYSGKDMLTSGITGEPMEAYVYFGPIY 1022

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERL
Sbjct: 1023 YQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERL 1082

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            M+SSD FEV  C  CGLLGY       G C+ CK+   ++ + +PYA KLL QEL +MN+
Sbjct: 1083 MISSDKFEVNACEECGLLGY------NGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNV 1136

Query: 1151 VPRLKLAEA 1159
            VPRL L +A
Sbjct: 1137 VPRLVLDDA 1145


>gi|31873396|emb|CAD97689.1| hypothetical protein [Homo sapiens]
          Length = 1133

 Score = 1343 bits (3476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1143 (57%), Positives = 836/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG P +AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPFEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|46195739|ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus]
 gi|51704303|sp|P59470.2|RPC2_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 127.6 kDa
            polypeptide; AltName: Full=DNA-directed RNA polymerase
            III subunit B
 gi|45829714|gb|AAH68143.1| Polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
          Length = 1133

 Score = 1343 bits (3475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1143 (57%), Positives = 835/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L AP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLTAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            LA+
Sbjct: 1128 LAK 1130


>gi|24429617|gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo sapiens]
          Length = 1133

 Score = 1343 bits (3475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 836/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G      A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTAEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|296212778|ref|XP_002752985.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Callithrix
            jacchus]
          Length = 1133

 Score = 1342 bits (3474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1143 (57%), Positives = 835/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASV SST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVPSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSRVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+   +SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGKCGLLGY------SGWCHFCKSSRQVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|410965427|ref|XP_003989249.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC2 [Felis catus]
          Length = 1133

 Score = 1342 bits (3474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1143 (57%), Positives = 836/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPISTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   K +T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKXRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG + EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYVNEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|291389954|ref|XP_002711473.1| PREDICTED: DNA-directed RNA polymerase III B [Oryctolagus cuniculus]
          Length = 1133

 Score = 1342 bits (3473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EELAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----VIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  P+ FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPSVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|351713401|gb|EHB16320.1| DNA-directed RNA polymerase III subunit RPC2 [Heterocephalus glaber]
          Length = 1133

 Score = 1342 bits (3472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1143 (57%), Positives = 837/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L AP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLVAPISTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G + R  A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEERVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLACTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS++  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYVSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+  L GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLAGNLGVEDVNFLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
               +     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSSVAQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|326912147|ref|XP_003202415.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Meleagris gallopavo]
          Length = 1129

 Score = 1341 bits (3470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1149 (57%), Positives = 837/1149 (72%), Gaps = 28/1149 (2%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV 71
            +  L +K+   A    + +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ 
Sbjct: 4    NHTLRNKEAQQAEWGYIKEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT 63

Query: 72   SGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
            S  DP  +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS   
Sbjct: 64   SDADPMWYLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR- 122

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
               + +N + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQE
Sbjct: 123  ---IIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQE 179

Query: 191  QLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            QLSKNR+I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI ++ KA
Sbjct: 180  QLSKNRIIVEADRKGTVGASVTSSTHEKKSRTNLVVKQGRFYLRHNTLSEDIPIAIIFKA 239

Query: 251  MGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPN 309
            MG+ESDQE+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R   +G P  
Sbjct: 240  MGVESDQEIVQMIGTEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKK 299

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             +   A  +L    L +V V   NFR KC Y AVM+RR++ A   ++ +DD+DY GNKRL
Sbjct: 300  TKMEEARELLASTILTHVLVKEFNFRAKCIYTAVMVRRVILAQ-GENKVDDRDYYGNKRL 358

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            EL+GQL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +ST
Sbjct: 359  ELAGQLLSLLFEDLFKKFNSELKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAIST 417

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP
Sbjct: 418  GNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCP 477

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  
Sbjct: 478  SDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYPNVFLVFL 537

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ILG  R  +   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K
Sbjct: 538  NGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKK 597

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
                +   HM+EL  G R+F+DFL EGL+EYLDVNEEN+  IALYE     DTTH+EIEP
Sbjct: 598  QKPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIALYEHTINKDTTHLEIEP 657

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ 
Sbjct: 658  FTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 717

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++
Sbjct: 718  TKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR 777

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y N T D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P 
Sbjct: 778  YTNQTFDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPT 830

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
             T+  +   +     +Y+    TYKG       +++V + S+      IK L+R TRRPE
Sbjct: 831  VTQTPLEGSSVPQQPQYKDVPVTYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPE 888

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAG
Sbjct: 889  IGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAG 948

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            V  GRFHYG+AFG        V+ + E L++HG++Y GKD + SGITG PL+AYI+ GP+
Sbjct: 949  VLDGRFHYGTAFG-----GSKVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPV 1003

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ER
Sbjct: 1004 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLER 1063

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMN
Sbjct: 1064 LMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMN 1117

Query: 1150 IVPRLKLAE 1158
            I+PRLKLA+
Sbjct: 1118 IIPRLKLAK 1126


>gi|354486330|ref|XP_003505334.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cricetulus
            griseus]
 gi|344253234|gb|EGW09338.1| DNA-directed RNA polymerase III subunit RPC2 [Cricetulus griseus]
          Length = 1133

 Score = 1340 bits (3469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1143 (57%), Positives = 836/1143 (73%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            ++LLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LALLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  VKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+F
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            LA+
Sbjct: 1128 LAK 1130


>gi|189230055|ref|NP_001121521.1| polymerase (RNA) III (DNA directed) polypeptide B [Xenopus (Silurana)
            tropicalis]
 gi|183986364|gb|AAI66377.1| LOC100158643 protein [Xenopus (Silurana) tropicalis]
          Length = 1134

 Score = 1338 bits (3463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1145 (57%), Positives = 841/1145 (73%), Gaps = 30/1145 (2%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS 77
            +++L APV +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP 
Sbjct: 13   QEELIAPVDTVQEKWKLLPAFLKVKGLVKQHIDSFNYFINDEIKKIMKANEKVTSDADPM 72

Query: 78   IFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
             +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +
Sbjct: 73   WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIR 128

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
            N + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR
Sbjct: 129  NALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNR 188

Query: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            +I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI ++ KAMG+ESD
Sbjct: 189  IIVEADRKGTVGASVTSSTHEKKSRTNLVVKQGRFYLKHNTLTEDIPIAIIFKAMGVESD 248

Query: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGS--PPNDREG 313
            QE+VQM+G +    A   PS+EEC    I+TQ +AL+++  KV+R   +GS  P   +  
Sbjct: 249  QEIVQMIGTEEHVIAAFAPSLEECQKAQIFTQMQALKFIGNKVRRQRMWGSSGPKKSKID 308

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L    L +VPV   +FR KC Y+AVM+RR++ A    + +DD+DY GNKRLEL+G
Sbjct: 309  EARELLASTILTHVPVKEFHFRTKCIYIAVMVRRVILAQ-GANKVDDRDYYGNKRLELAG 367

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
            QL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +S+GN+ 
Sbjct: 368  QLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISSGNWS 426

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTP
Sbjct: 427  LKRFKMDRQGVTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTP 486

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL   N FLV  NG I
Sbjct: 487  EGEACGLVKNLALMTHITTDMEDGPIIKLAANLGVEDVNLLCGEELSYANVFLVFLNGNI 546

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            LG  R  +   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I     S 
Sbjct: 547  LGVIRDHQKLVNTFRLMRRAGYINEFVSISTNISDRCVYISSDGGRLCRPYIIVKNQRSA 606

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +   H++EL  G RSF+DFL E L+EYLDVNEEN+  +ALYE   T  TTH+EIEPFT+L
Sbjct: 607  VTNKHIQELSQGYRSFEDFLHESLVEYLDVNEENDCNVALYEHTITKHTTHLEIEPFTLL 666

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQRP++ T+TI
Sbjct: 667  GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTI 726

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y+N 
Sbjct: 727  ELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQ 786

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
            T D+++ P        R Q+  H      ILD DG+ +PGE ++   V +NK  P  T+ 
Sbjct: 787  TFDKVMGP--MLDANTRKQIWRHE-----ILDADGICSPGEKVENKQVLVNKYMPTVTQT 839

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
             +   +     +Y+    TYKGP      +++V + S+      IK L+R TRRPE+GDK
Sbjct: 840  PLEGSSVPQQPQYKDVPITYKGPTDS--YIEKVMISSNAEDAFLIKILLRQTRRPEIGDK 897

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            FSSRHGQKGVCG IV QED PF E GICPD+IMNPHG+PSRMTVGK+IELL GKAGV  G
Sbjct: 898  FSSRHGQKGVCGLIVPQEDMPFCETGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDG 957

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
            RFHYG+AFG        V+ + E L+++G++Y GKD + SGITG PL+AYI+ GP+YYQK
Sbjct: 958  RFHYGTAFG-----GSKVKDVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQK 1012

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+S
Sbjct: 1013 LKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMIS 1072

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PR
Sbjct: 1073 SDAFEVDVCGKCGLLGY------SGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPR 1126

Query: 1154 LKLAE 1158
            LKLA+
Sbjct: 1127 LKLAK 1131


>gi|395327723|gb|EJF60120.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1142

 Score = 1334 bits (3452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1148 (57%), Positives = 838/1148 (72%), Gaps = 37/1148 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I++AN+++ S +DP  +L
Sbjct: 23   LTDPIKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWL 82

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P  T  D + + + PH CRL D TY+APILV I+Y +G    KT + + +V
Sbjct: 83   KYTDIVVGFPDRTDADAIDKSVTPHECRLRDTTYSAPILVTIQYTRG----KTVVRRANV 138

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G++EA+LAR+ ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+I+
Sbjct: 139  NIGRLPIMLRSNKCVLTGRNEAQLARMTECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV 198

Query: 200  DTD-KKGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            + D  KG + AS TSST   +KSKT +  +KGK+YL  N   + +PI + +KA+G++SD+
Sbjct: 199  EIDPTKGVVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIAIALKALGIQSDK 258

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y +   P++EE A L ++T+ +ALE++  +VK  R   G P       
Sbjct: 259  EILLLTAGNHEAYKSAFSPNLEEAAKLGVFTRHQALEWIGSRVKVNRRVVG-PRRPSWEE 317

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPVH  +FRPK  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 318  ALEALATIVLAHVPVHGLDFRPKAVFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQ 377

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGNF 432
            L++LLFEDLFKT  + ++  +D +L KPSR+S FD   +     D IT G  R +STGN+
Sbjct: 378  LLALLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAFNTMQFQGDHITAGFVRAISTGNW 437

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 438  SLKRFKMDRAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 497

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD EE P+I + + LGVED+ L +G E++ P++F+V  NG 
Sbjct: 498  PEGEACGLVKNLALMTHITTDVEEEPIIRIAFMLGVEDISLATGAEIYGPHTFVVNVNGS 557

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            I+G  R P  F    R+LRRAG+  EFVSV++N   R V IASDGGR+CRP++I + G  
Sbjct: 558  IIGLTRYPARFVSNFRRLRRAGRFSEFVSVYINHHHRTVLIASDGGRICRPMIIVENGRP 617

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            ++   H+ +L  G  +FDDFLR+GL+EYLDVNEEN++ IALYE D  P TTH+EIEPFT+
Sbjct: 618  KVTSEHIAQLKQGQLTFDDFLRKGLVEYLDVNEENDSYIALYEKDIVPGTTHLEIEPFTL 677

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL VYPQ+P++ T+T
Sbjct: 678  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKT 737

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+GYD+L AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY N
Sbjct: 738  IELIGYDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPN 797

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DR+       P  E  QV    +    I+  DGLA  GE + P DVYINK++P  T 
Sbjct: 798  GTFDRLA----DAPLDENGQVQKKYD----IVQTDGLAGVGERVDPGDVYINKQTP--TN 847

Query: 853  GSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
             +  S TGQ  +  Y++   TYK P      +D+V +   +N    IK LIR TRRPELG
Sbjct: 848  ANDNSFTGQAATVPYKNTPMTYKSPVAGQ--IDKVMVTDTENDQTLIKVLIRQTRRPELG 905

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV 
Sbjct: 906  DKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVL 965

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G+  YG+AFG        VE +S  LV++GFSY GKDM+ SGITG PL+AY++ GPIYY
Sbjct: 966  AGKLQYGTAFG-----GSKVEDMSRILVENGFSYAGKDMLTSGITGEPLEAYVYFGPIYY 1020

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERLM
Sbjct: 1021 QKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLM 1080

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSD F+V  C  CGLLGY       G C  CK+   ++ + +PYA KLL QEL +MN+V
Sbjct: 1081 ISSDQFQVDACEECGLLGY------NGWCPYCKSSKKMAQLTIPYAAKLLFQELMAMNVV 1134

Query: 1152 PRLKLAEA 1159
            PRL L +A
Sbjct: 1135 PRLVLDDA 1142


>gi|47219788|emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1171

 Score = 1333 bits (3450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1174 (56%), Positives = 838/1174 (71%), Gaps = 55/1174 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP-- 76
            Q+LAAPV +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN++I S  DP  
Sbjct: 14   QELAAPVNTVAEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDADPMW 73

Query: 77   ---------------------------SIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRL 108
                                        +F R+ ++ +G P +     V+  ++PH CRL
Sbjct: 74   YLKSVTRLFKYILYELQNSHYHLSKFLCLFYRYLNIYVGMPDVEESFNVTRPVSPHECRL 133

Query: 109  SDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGE 168
             DMTY+API V+IEY +GS      + +N + IGR+PIMLRS  CVL GK   E A+L E
Sbjct: 134  RDMTYSAPITVDIEYTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPMEFAKLNE 189

Query: 169  CPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEK 228
            CPLDPGGYFI+KG EKV+LIQEQLSKNR+I+D D+KG + ASVTSST   KS+T + +++
Sbjct: 190  CPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKGAVGASVTSSTHEKKSRTNMIVKQ 249

Query: 229  GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQ 288
            G+ YL  N   +  PI ++ K MG+ESDQE+VQM+G +    A   PS+EEC    I+TQ
Sbjct: 250  GRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEENVMASFAPSLEECQKAQIFTQ 309

Query: 289  EKALEYLEGKVKRS-TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
             +AL YL  KV+R   +G P   +   A  +L  + L +VPV   NFR KC Y+AVM+RR
Sbjct: 310  TQALRYLGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRR 369

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR 407
            ++ A    + +DD+DY GNKRLEL+GQL+SLLFEDLFK   SE++K  D I+ K  R+++
Sbjct: 370  VILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPK-QRAAQ 427

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
            FD+ + + +D IT G+   +STGN+ +KRFKM R+G+TQVL+RLSFI  LG MTR+S QF
Sbjct: 428  FDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQF 487

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
            EK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP+I L + LG
Sbjct: 488  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLG 547

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
            VED+ LL GEEL  P+ FLV  NG ILG  R  +      R +RRAG I EFVS+  N  
Sbjct: 548  VEDVNLLCGEELSYPSVFLVFLNGNILGVIRDHQKLVGTFRLMRRAGFINEFVSISTNLT 607

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN 647
             RCVYI+SDGGR+CRP +I  KG   +K  HM++L  G R+F+DFL +GL+EYLDVNEEN
Sbjct: 608  DRCVYISSDGGRLCRPYIIVKKGQPMVKNKHMEDLSQGYRNFEDFLHDGLVEYLDVNEEN 667

Query: 648  NALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
            +  IALYE     DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +
Sbjct: 668  DCQIALYEHMIHKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGY 727

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            NQ  R+D+L+YLL YPQRP++ T+TIE++ ++KL AGQNATVAVMSYSGYDIEDA+++NK
Sbjct: 728  NQRNRIDTLMYLLAYPQRPMVKTKTIEIIEFEKLPAGQNATVAVMSYSGYDIEDALILNK 787

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            +SLDRGFGRC+V K      ++Y N T D+++ P      A R  +  H+     ILD D
Sbjct: 788  ASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGP--MLDAATRKPIWRHN-----ILDAD 840

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ +PGE ++   V +NK  P  T+  +   T     +YR     YKG       +++V 
Sbjct: 841  GICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQPQYRDVPICYKG--STDSYIEKVM 898

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + S+      IK L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+IMN
Sbjct: 899  ISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMN 958

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PHG+PSRMTVGK+IELL GKAGV  GRFHYG+AFG        V+ + E L++HG++Y G
Sbjct: 959  PHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLIRHGYNYQG 1013

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
            KD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGL
Sbjct: 1014 KDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGL 1073

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI----CSTC 1123
            R+GEMERDCLI YGASML+ ERLM+SSD FEV VC  CGLLGY   ++K       C  C
Sbjct: 1074 RLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWQVKLSHLDLECHYC 1133

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            K+   +SS+++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1134 KSSCQVSSLRIPYACKLLFQELQSMNIIPRLKLS 1167


>gi|345326788|ref|XP_001508364.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
            [Ornithorhynchus anatinus]
          Length = 1112

 Score = 1333 bits (3450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1132 (57%), Positives = 828/1132 (73%), Gaps = 29/1132 (2%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  +L++ ++ +G 
Sbjct: 4    EKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGL 63

Query: 90   PSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N + IGR+PIML
Sbjct: 64   PDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRNALPIGRMPIML 119

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
            RS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+I++ D+KG + 
Sbjct: 120  RSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVG 179

Query: 209  ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPR 268
            ASVTSST   KS+T + +++G+ YL  N   + IPI ++ KAMG+ESDQE+VQM+G +  
Sbjct: 180  ASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIAIIFKAMGVESDQEIVQMIGTEEH 239

Query: 269  YSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRAFSILRDVFLAN 326
              A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A  +L    L +
Sbjct: 240  VMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKMEEARELLASTILTH 299

Query: 327  VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKT 386
            VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL+SLLFEDLFK 
Sbjct: 300  VPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKK 358

Query: 387  MISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQ 446
              SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +KRFKM R+G+TQ
Sbjct: 359  FNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQ 417

Query: 447  VLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
            VL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLAL
Sbjct: 418  VLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLAL 477

Query: 507  MTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADV 566
            MTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG  R  K   + 
Sbjct: 478  MTHITTDMEDGPIVKLANNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNT 537

Query: 567  MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV 626
             R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + + HM+EL  G 
Sbjct: 538  FRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTDKHMEELAQGY 597

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
            R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV AGLIPYPHHN
Sbjct: 598  RNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHN 657

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ ++KL AGQN
Sbjct: 658  QSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQN 717

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            ATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D+++ P     
Sbjct: 718  ATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGP--MLD 775

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
             A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +         +Y
Sbjct: 776  AATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQY 830

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
            +    TYKG       +++V + S+      IK L+R TRRPE+GDKFSSRHGQKGVCG 
Sbjct: 831  KDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGL 888

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
            IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+FHYG+AFG    
Sbjct: 889  IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKFHYGTAFG---- 944

Query: 987  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
                V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR 
Sbjct: 945  -GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 1003

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC  CG
Sbjct: 1004 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCG 1063

Query: 1107 LLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            LLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL++
Sbjct: 1064 LLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1109


>gi|440907714|gb|ELR57824.1| DNA-directed RNA polymerase III subunit RPC2 [Bos grunniens mutus]
          Length = 1133

 Score = 1333 bits (3449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1143 (57%), Positives = 833/1143 (72%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GK  + S   G PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKVHLASQGLGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|426193713|gb|EKV43646.1| hypothetical protein AGABI2DRAFT_188003 [Agaricus bisporus var.
            bisporus H97]
          Length = 1142

 Score = 1332 bits (3447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1151 (57%), Positives = 842/1151 (73%), Gaps = 44/1151 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  PVKSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  ++ IV+AN++I S +DP  +L
Sbjct: 23   LTDPVKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWL 82

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P    ++ V +K+ PH CRL D TY+API+V I+Y +G    K  +++N V
Sbjct: 83   KYVDINVGFPDRNEMETVEKKVTPHECRLRDTTYSAPIIVTIQYTRG----KNIVQRN-V 137

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G+ EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 138  NIGRLPIMLRSNKCVLTGRTEAQLARMSECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 197

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            +TD  KG + AS TSST   +KSKT +  +KG++YL  N   + +PI++ +KA+G++SD+
Sbjct: 198  ETDNVKGVVQASCTSSTHGGLKSKTYVATKKGRIYLRHNSIHEDLPIVIALKALGVQSDK 257

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y      ++E+ A L I+T+++ALEY+  +VK  R   G P       
Sbjct: 258  EILLLTAGNTEAYKIAFSANLEDAAKLGIFTRQQALEYIGTRVKVNRRVVG-PRRPAWEE 316

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV+  + RPK  +VA M RR++ AM +++ +DD+DYVGNKRLEL+GQ
Sbjct: 317  ALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDYVGNKRLELAGQ 376

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS---QFIVRDSITVGLERTLSTGN 431
            L++LLFEDLFKT  S ++  +D +L KPSR++ FD     QF   D +T G  R +STGN
Sbjct: 377  LLALLFEDLFKTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQF-QGDHLTAGFVRAISTGN 435

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWG+LCP D
Sbjct: 436  WSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSD 495

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD EE P+I L + LGVED+ L +G E++ PN+F+V  NG
Sbjct: 496  TPEGEACGLVKNLALMTHITTDVEEEPIIQLAFMLGVEDIRLATGTEIYGPNTFVVNVNG 555

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F    RKLRRA +  EFVS++VN   R V+IASDGGR+CRP++I + G 
Sbjct: 556  TIIGLTRHPMRFVSQFRKLRRARRFSEFVSIYVNHHHRTVHIASDGGRICRPMIIVEHGR 615

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
            S++   H   L DG  +FDDFLR+G++EYLDVNEEN+  IALYE D TP TTH+EIEPFT
Sbjct: 616  SKVTPEHATHLKDGTATFDDFLRKGVVEYLDVNEENDTYIALYESDITPHTTHLEIEPFT 675

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL VYPQ+P++ T+
Sbjct: 676  LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTK 735

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYDKL AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY 
Sbjct: 736  TIELIGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYP 795

Query: 792  NSTSDRILRP--DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            N T DR+     D  G  A+R  ++            DGLA  GE + P D+Y+NK+SP 
Sbjct: 796  NGTYDRLADAPIDENGMTAKRYDIIQ----------PDGLAGVGERVDPGDIYVNKQSP- 844

Query: 850  ETRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             T  S  S TGQ  S  Y++   TYK P      +D+V +   +N    IK LIR TRRP
Sbjct: 845  -TNASDNSFTGQAASVPYKNTPLTYKSP--VAGYIDKVMVTDTENEQTLIKVLIRQTRRP 901

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKA
Sbjct: 902  ELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKA 961

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G+  YG+AFG        VE +S  L+++GFSY GKDM+ SGITG PL+AY++ GP
Sbjct: 962  GVLTGKLQYGTAFG-----GSKVEDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGP 1016

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ E
Sbjct: 1017 IYYQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLE 1076

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD FEV  C+ CGL+GY       G C+ CK+   ++S+ +PYA KLL QEL +M
Sbjct: 1077 RLMISSDIFEVNACQECGLMGY------NGWCTYCKSSKKMASLTIPYAAKLLFQELMAM 1130

Query: 1149 NIVPRLKLAEA 1159
            N+VPRL L +A
Sbjct: 1131 NVVPRLILDDA 1141


>gi|409075839|gb|EKM76215.1| hypothetical protein AGABI1DRAFT_122788 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1142

 Score = 1330 bits (3442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1151 (57%), Positives = 842/1151 (73%), Gaps = 44/1151 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  PVKSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  ++ IV+AN++I S +DP  +L
Sbjct: 23   LTDPVKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWL 82

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P    ++ V +K+ PH CRL D TY+API+V I+Y +G    K  +++N V
Sbjct: 83   KYVDINVGFPDRNEMETVEKKVTPHECRLRDTTYSAPIIVTIQYTRG----KNIVQRN-V 137

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G+ EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 138  NIGRLPIMLRSNKCVLTGRTEAQLARMSECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 197

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            +TD  KG + AS TSST   +KSKT +  +KG++YL  N   + +PI++ +KA+G++SD+
Sbjct: 198  ETDNVKGVVQASCTSSTHGGLKSKTYVATKKGRIYLRHNSIHEDLPIVIALKALGVQSDK 257

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y      ++E+ A L I+T+++ALEY+  +VK  R   G P       
Sbjct: 258  EILLLTAGNTEAYKIAFSANLEDAAKLGIFTRQQALEYIGTRVKVNRRVVG-PRRPAWEE 316

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV+  + RPK  +VA M RR++ AM +++ +DD+DYVGNKRLEL+GQ
Sbjct: 317  ALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDYVGNKRLELAGQ 376

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS---QFIVRDSITVGLERTLSTGN 431
            L++LLFEDLFKT  S ++  +D +L KPSR++ FD     QF   D +T G  R +STGN
Sbjct: 377  LLALLFEDLFKTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQF-QGDHLTAGFVRAISTGN 435

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWG+LCP D
Sbjct: 436  WSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSD 495

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD EE P+I L + LGVED+ L +G E++ PN+F+V  NG
Sbjct: 496  TPEGEACGLVKNLALMTHITTDVEEEPIIQLAFMLGVEDIRLATGTEIYGPNTFVVNVNG 555

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F    RKLRRA +  EFVS++VN   R V+IASDGGR+CRP++I + G 
Sbjct: 556  TIIGLIRHPMRFVSQFRKLRRARRFSEFVSIYVNHHHRTVHIASDGGRICRPMIIVEHGR 615

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
            S++   H   L DG  +FDDFLR+G++EYLDVNEEN+  IALYE D TP TTH+EIEPFT
Sbjct: 616  SKVTPEHATYLKDGTATFDDFLRKGVVEYLDVNEENDTYIALYESDITPHTTHLEIEPFT 675

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL VYPQ+P++ T+
Sbjct: 676  LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTK 735

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYDKL AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY 
Sbjct: 736  TIELIGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYP 795

Query: 792  NSTSDRILRP--DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            N T DR+     D  G  A+R  ++            DGLA  GE + P D+Y+NK+SP 
Sbjct: 796  NGTYDRLADAPVDENGMTAKRYDIIQ----------PDGLAGVGERVDPGDIYVNKQSP- 844

Query: 850  ETRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             T  S  S TGQ  S  Y++   TYK P      +D+V +   +N    IK LIR TRRP
Sbjct: 845  -TNASDNSFTGQAASVPYKNTPLTYKSP--VAGYIDKVMVTDTENEQTLIKVLIRQTRRP 901

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKA
Sbjct: 902  ELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKA 961

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G+  YG+AFG        VE +S  L+++GFSY GKDM+ SGITG PL+AY++ GP
Sbjct: 962  GVLTGKLQYGTAFG-----GSKVEDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGP 1016

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ E
Sbjct: 1017 IYYQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLE 1076

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD FEV  C+ CGL+GY       G C+ CK+   ++S+ +PYA KLL QEL +M
Sbjct: 1077 RLMISSDIFEVNACQECGLMGY------NGWCTYCKSSKKMASLTIPYAAKLLFQELMAM 1130

Query: 1149 NIVPRLKLAEA 1159
            N+VPRL L +A
Sbjct: 1131 NVVPRLILDDA 1141


>gi|299741189|ref|XP_001834288.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298404597|gb|EAU87529.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1149

 Score = 1329 bits (3439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1158 (56%), Positives = 845/1158 (72%), Gaps = 49/1158 (4%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  PVK+V DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ IV+AN+++ S +DP  +L
Sbjct: 22   LNDPVKTVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWL 81

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P    ++ + +++ PH CRL D TY+API+V I+Y +G    K+ +++N V
Sbjct: 82   KYTDINVGFPDRNEMEAIDKRVTPHECRLRDTTYSAPIIVTIQYTRG----KSIVQRN-V 136

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL GK EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 137  NIGRLPIMLRSNKCVLTGKTEAQLARMTECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 196

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            +TD  KG + AS TSST   +KSKT +  +KG++YL  N   + +PI++ +KA+G++SD+
Sbjct: 197  ETDNVKGIVQASCTSSTHGGLKSKTYVITKKGRIYLRHNSIHEDVPIVIALKALGIQSDK 256

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y  +   +IE+ A L I+T+ +ALEY+  +VK  R   G P       
Sbjct: 257  EILLLTAGNTEEYKTIFSANIEDAAKLGIFTRHQALEYIGARVKVNRKVMG-PRRPAWEE 315

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV   +FR K  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 316  ALEALATIVLAHVPVQGLDFRAKAIFVATMTRRVLMAMDDESMVDDRDYVGNKRLELAGQ 375

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGNF 432
            L++LLFEDLFKT  S ++  +D +L KPSR+S FD   +  +  D +T G  R +STGN+
Sbjct: 376  LLALLFEDLFKTYNSNLKSAIDKVLKKPSRTSEFDAFNTMQMQGDHLTSGFVRAISTGNW 435

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWG+LCP DT
Sbjct: 436  SLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDT 495

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD EEGP+I L + LGVED+ L +G E++ PNS++V  NG 
Sbjct: 496  PEGEACGLVKNLALMTHITTDVEEGPIIRLAFMLGVEDISLTTGTEIYGPNSYVVYINGT 555

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            I+G  R P  F    RKLRRA +  EFVSV++N   R V+IASDGGR+CRP++I +KG S
Sbjct: 556  IIGVTRTPTKFVSQFRKLRRARRFSEFVSVYINHHHRAVHIASDGGRICRPMIIVEKGRS 615

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            R+   H+ +L  G  +FDDFLR+GL+EYLDVNEEN+  IAL+E D  P TTH+EIEPFTI
Sbjct: 616  RVTSDHIVQLKKGNVTFDDFLRKGLVEYLDVNEENDTFIALHEHDIVPTTTHLEIEPFTI 675

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ+ R+D+LLYL VYPQ+P++ TRT
Sbjct: 676  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQMNRIDTLLYLSVYPQQPMVKTRT 735

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+GYD+L AGQNATVA+MSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY N
Sbjct: 736  IELIGYDRLPAGQNATVAIMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLLRKYPN 795

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DR+       P  E  Q+    +    I+  DGL   GE + P D+Y+NK+SP  T 
Sbjct: 796  GTFDRLA----DAPLDENGQIQRRYD----IVQADGLPGVGERVDPGDIYVNKQSP--TN 845

Query: 853  GSIMSPTGQTDS-RYRSARQTYKGPDGETC-VVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
             +  + TGQ  S  Y++A  +YK P    C ++D+V +    N    IK LIR TRRPEL
Sbjct: 846  ATDNTFTGQAASVPYKNAPLSYKSP---VCGMIDKVMISDTDNDQTLIKVLIRQTRRPEL 902

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IV QED PF+E GI PD IMNPHGFPSRMTVGKMIELL GKAGV
Sbjct: 903  GDKFSSRHGQKGVCGLIVNQEDLPFNEDGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGV 962

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+  YG+AFG        VE +S  L++HGFSY GKDM+ SGITG PL+AY++ GPIY
Sbjct: 963  LTGKLQYGTAFG-----GSKVEDMSRILIEHGFSYGGKDMLTSGITGEPLEAYVYFGPIY 1017

Query: 1031 Y---------QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            Y         QKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YG
Sbjct: 1018 YQKAILTVYFQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYG 1077

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            A+ L+ ERLM+SSD FEV  C+ CGL+GY       G C+ CK+   ++++ +PYA KLL
Sbjct: 1078 ATQLLLERLMISSDKFEVGACQECGLMGY------NGWCTYCKSSKKMATLTIPYAAKLL 1131

Query: 1142 IQELQSMNIVPRLKLAEA 1159
             QEL +MN+VPRL L +A
Sbjct: 1132 FQELMAMNVVPRLVLDDA 1149


>gi|449276422|gb|EMC84954.1| DNA-directed RNA polymerase III subunit RPC2, partial [Columba livia]
          Length = 1105

 Score = 1325 bits (3429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1128 (57%), Positives = 825/1128 (73%), Gaps = 29/1128 (2%)

Query: 34   LLPEFL-KVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSM 92
            LLP ++ +V+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  +L++ ++ +G P +
Sbjct: 1    LLPAYIFQVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGTPDV 60

Query: 93   TVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 151
                 V+  ++PH CRL DMTY+API V+IEY +GS      + +N + IGR+PIMLRS 
Sbjct: 61   EESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRNALPIGRMPIMLRSS 116

Query: 152  RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 211
             CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+I++ D+KG + ASV
Sbjct: 117  NCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGASV 176

Query: 212  TSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA 271
            TSST   KS+T + +++G+ YL  N   + IPI ++ KAMG+ESDQE+VQM+G +    A
Sbjct: 177  TSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKAMGVESDQEIVQMIGTEEHVMA 236

Query: 272  LLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDREGRAFSILRDVFLANVPVH 330
               PS+EEC    I+TQ +AL+Y+  KV+R   +G P   +   A  +L    L +V V 
Sbjct: 237  AFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVLVK 296

Query: 331  NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISE 390
              NFR KC Y AVM+RR++ A   ++ +DD+DY GNKRLEL+GQL+SLLFEDLFK   SE
Sbjct: 297  EFNFRAKCIYTAVMVRRVILAQ-GENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSE 355

Query: 391  VQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLAR 450
            ++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +KRFKM R+G+TQVL+R
Sbjct: 356  LKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSR 414

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
            LS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+
Sbjct: 415  LSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 474

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG  R  +   +  R +
Sbjct: 475  TTDMEDGPIIKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHQKLVNTFRIM 534

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD 630
            RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    +   HM+EL  G R+F+
Sbjct: 535  RRAGYINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE 594

Query: 631  DFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPR 690
            DFL EGL+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV AGLIPYPHHNQSPR
Sbjct: 595  DFLHEGLVEYLDVNEENDCSIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPR 654

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ ++KL AGQNATVA
Sbjct: 655  NTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVA 714

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            VMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D+++ P      A R
Sbjct: 715  VMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGP--MLDAATR 772

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
              +  H      ILD DG+ +PGE ++   V +NK  P  T+  +         +Y+   
Sbjct: 773  KPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSNVPQQPQYKDVP 827

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             TYKG       +++V + S+      IK L+R TRRPE+GDKFSSRHGQKGVCG IV Q
Sbjct: 828  VTYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQ 885

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG+AFG        
Sbjct: 886  EDMPFCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSK 940

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V+ + E L++HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR  GPR
Sbjct: 941  VKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPR 1000

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC  CGLLGY
Sbjct: 1001 AVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY 1060

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
                  +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKLA+
Sbjct: 1061 ------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAK 1102


>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1167

 Score = 1323 bits (3423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/1157 (54%), Positives = 846/1157 (73%), Gaps = 45/1157 (3%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            +K+ L  PV ++ DK+ LLP FLKV+GL+KQH DSFNYFV+  ++KIV+AN++++S ++P
Sbjct: 39   NKKSLIDPVNTLEDKWHLLPAFLKVKGLIKQHTDSFNYFVDVDLKKIVKANEKVISDVEP 98

Query: 77   SIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              +L++ D+++G P+    D ++  + PH CRL D+TY+API+V+IEY +G    K  + 
Sbjct: 99   WFYLKYIDIQVGFPTRQDQDAINNSIAPHECRLRDLTYSAPIMVDIEYTRG----KQVVR 154

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +  V IGR+PIMLRS +C+L+ K E ++ R+ ECPLDPGGYFI+KGTEKV+L+QEQLSKN
Sbjct: 155  RKGVQIGRLPIMLRSNKCILFNKTETQIIRMNECPLDPGGYFIVKGTEKVILVQEQLSKN 214

Query: 196  RVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            R+I++ + KKG + ASV SST   KSKT +  +  K+YL  N   + +PI+++ KAMG +
Sbjct: 215  RIIVEAEPKKGLVQASVISSTHERKSKTYVLTKNAKIYLKHNSIAEDVPIVLIFKAMGFQ 274

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS------P 307
            SDQE+++++ G DP Y  +   +IEECA L IYTQ++ALEYL  +VK S   S      P
Sbjct: 275  SDQEILELIAGSDPNYQDMFAINIEECAKLKIYTQQQALEYLGARVKISRKNSELSQRRP 334

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
            P++    A  +L  + LA++PV N NFRPK  Y A+M RR++ A+ N   +DD+DYVGNK
Sbjct: 335  PSEE---ALEVLAAIVLAHIPVENLNFRPKIIYFAIMTRRVLMAIKNPKMVDDRDYVGNK 391

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLER 425
            RLEL+GQL+SLLFEDLFKT    ++  +D +L KP+R+  FD  +Q  +  D IT G+ R
Sbjct: 392  RLELAGQLLSLLFEDLFKTFNRNLKLNIDKVLKKPNRTQEFDAYNQISIHGDHITSGMIR 451

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RK+SGPRALQPSQ+G
Sbjct: 452  AISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKISGPRALQPSQFG 511

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE--DLELLSGEELHNPN 543
            MLCP DTPEGE+CGL+KNLALMTH+TTD +E P+  L + LG E  D+ L++G EL+ P 
Sbjct: 512  MLCPSDTPEGESCGLIKNLALMTHITTDNDEEPIEKLAFVLGTEEKDISLITGHELYAPG 571

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP 603
            ++++  NG+ILG  R P  F    RKLRR G+I EF+S+ +N     V+IASDGGR+CRP
Sbjct: 572  TYVIYLNGIILGITRFPTIFVSNFRKLRRKGQISEFISIHINHHYSSVHIASDGGRICRP 631

Query: 604  LVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT 663
            L+I + G S++   H++ L  G  +FDDFL+ GL+EYLDVNEEN++ I++YE   +  TT
Sbjct: 632  LIIVENGKSKVTSQHLEALKAGKMTFDDFLKRGLVEYLDVNEENDSYISIYENKISESTT 691

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+DSLLYL++YP
Sbjct: 692  HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAWNQLLRIDSLLYLMIYP 751

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            Q+PL+ T+TI+L+GYDKL AGQNA +AVMS+SGYDIEDA+++NK+S+DRGFGRC V++KY
Sbjct: 752  QQPLVKTKTIDLIGYDKLPAGQNAIIAVMSFSGYDIEDALILNKASIDRGFGRCQVIRKY 811

Query: 784  TAINQKYANSTSDRILRPDRT-GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
                ++YAN + DR+  P R  G  A + +           L++DGLA  GE I+   +Y
Sbjct: 812  ATTIKRYANGSYDRLEGPSRNEGDVAWKYEA----------LEEDGLAGVGEKIESGQIY 861

Query: 843  INKESPLETR-GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            INK+ P      +I +   Q +  ++++   YK    E   +D++ L +  +    IK L
Sbjct: 862  INKQIPTNANDNTIATRIQQHELSWKASPMIYKS--FEPGYIDKIMLTTTDSDQTLIKCL 919

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TRRPELGDKFSSRHGQKGVCG IVQQED PF + GI PD+IMNPHGFPSRMTVGKMI
Sbjct: 920  VRQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFDQNGITPDIIMNPHGFPSRMTVGKMI 979

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            ELL GKAGV  G   YG+AFG        ++ +S+ L+++G+SY+GKD + SGITG  LQ
Sbjct: 980  ELLAGKAGVLSGTLQYGTAFG-----GSKIDDMSQILIENGYSYSGKDELTSGITGESLQ 1034

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1035 AYIFFGPIYYQKLKHMVLDKMHARARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1094

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            AS L+ ERLM+SSD F+V +C  CGL+GY       G C+ CK+  ++  + +PYA KLL
Sbjct: 1095 ASQLLLERLMLSSDAFKVDICEACGLIGY------KGWCNRCKSTKDVVKLTIPYAAKLL 1148

Query: 1142 IQELQSMNIVPRLKLAE 1158
             QEL SMNI+P+L L +
Sbjct: 1149 FQELISMNIIPKLILHD 1165


>gi|392563480|gb|EIW56659.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1143

 Score = 1322 bits (3422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1145 (56%), Positives = 835/1145 (72%), Gaps = 37/1145 (3%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFK 83
            P+KSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I++AN+++ S +DP  +L++ 
Sbjct: 27   PIKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYT 86

Query: 84   DVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
            D+ +G P  T  D + + + PH CRL D TY APILV I+Y +G    K+ + + +V IG
Sbjct: 87   DIVVGFPDRTDADAIDKSVTPHECRLRDTTYGAPILVTIQYTRG----KSVVRRANVNIG 142

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            R+PIMLRS +CVL G+ EA+LAR+ ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+I++ D
Sbjct: 143  RLPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEVD 202

Query: 203  -KKGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
              KG + AS TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G++SD+E++
Sbjct: 203  PTKGVVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDKEIL 262

Query: 261  QMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGRAFS 317
             +  G    Y +   P++E+ A L ++T+ +ALE++  +VK  R   G P       A  
Sbjct: 263  LLTAGNHEAYKSSFAPNLEDAAKLGVFTRHQALEWIGSRVKVNRRVMG-PRRPAWEEALE 321

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             L  + LA+VPV   +FR K  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQL++
Sbjct: 322  ALATIVLAHVPVSGLDFRSKAVFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQLLA 381

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGNFDVK 435
            LLFEDLFKT  + ++  +D +L KPSR+S FD   +     D IT G  R +STGN+ +K
Sbjct: 382  LLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAFNTMQFQGDHITSGFVRAISTGNWSLK 441

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R G+T VL+RLSF+  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DTPEG
Sbjct: 442  RFKMERAGVTHVLSRLSFVSALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEG 501

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD +E P+I + + LGVED+ L +G E++ P++F+V  NG I+G
Sbjct: 502  EACGLVKNLALMTHITTDVDEEPIIRIAFMLGVEDISLATGTEIYGPHTFVVNVNGTIIG 561

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R P  F    R+LRRAG+  EFVSV++N   R V IASDGGR+CRP++I + G  ++ 
Sbjct: 562  LTRYPARFVSNFRRLRRAGRFSEFVSVYINHHHRTVLIASDGGRICRPMIIVESGRPKVM 621

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              H+ +L  G  +FDDFLR+GL+EYLDVNEEN++ IALYE D  P TTH+EIEPFT+LG 
Sbjct: 622  SEHIAQLKQGQLTFDDFLRKGLVEYLDVNEENDSYIALYEKDIVPGTTHLEIEPFTLLGA 681

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL VYPQ+P++ T+TIEL
Sbjct: 682  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIEL 741

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            +GYD+L AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY N T 
Sbjct: 742  IGYDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTY 801

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DR+       P  E  QV    +    I+  DGLA  GE + P DVYINK++P  T  + 
Sbjct: 802  DRLA----DAPVDETGQVQKKYD----IIQPDGLAGVGERVDPGDVYINKQTP--TNAND 851

Query: 856  MSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
             S TGQ  +  Y++A  TYK P      +D+V +   +N    IK LIR TRRPELGDKF
Sbjct: 852  NSFTGQAATVPYKNAPMTYKSPVAGQ--IDKVMITDTENDQTLIKVLIRQTRRPELGDKF 909

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV  G+
Sbjct: 910  SSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGVLAGK 969

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
              YG+AFG        VE +S  L++ GFSY GKDM+ SGITG PL+AY++ GPIYYQKL
Sbjct: 970  LQYGTAFG-----GSKVEDMSRILIEKGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKL 1024

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERLM+SS
Sbjct: 1025 KHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISS 1084

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F+V  C+ CGLLGY       G C  CK+   ++ + +PYA KLL QEL +MN+VPRL
Sbjct: 1085 DQFQVDACQECGLLGY------NGWCPYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1138

Query: 1155 KLAEA 1159
             L +A
Sbjct: 1139 VLDDA 1143


>gi|432094370|gb|ELK25947.1| DNA-directed RNA polymerase III subunit RPC2 [Myotis davidii]
          Length = 1122

 Score = 1318 bits (3410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1143 (56%), Positives = 828/1143 (72%), Gaps = 40/1143 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V           +V+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTV-----------EVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 62

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 63   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 118

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 119  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 178

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+E DQ
Sbjct: 179  IVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVECDQ 238

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 239  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 298

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 299  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 357

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 358  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 416

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 417  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 476

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 477  EACGLVKNLALMTHITTDMEDGPIVRLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 536

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 537  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 596

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 597  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 656

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 657  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 716

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 717  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 776

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD +G+ +PGE ++   V +NK  P  T+  +
Sbjct: 777  DKVMGP--ILDAATRKPIWRHE-----ILDANGICSPGEKVENKQVLVNKSMPTVTQIPL 829

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
               +     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 830  EGSSVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 887

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 888  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 947

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 948  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1002

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1003 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1062

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1063 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1116

Query: 1156 LAE 1158
            LA+
Sbjct: 1117 LAK 1119


>gi|170097637|ref|XP_001880038.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645441|gb|EDR09689.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1142

 Score = 1316 bits (3407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1148 (56%), Positives = 832/1148 (72%), Gaps = 38/1148 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ IVRAN+++ S +DP  +L
Sbjct: 24   LTDPIKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDIDIKNIVRANNKVTSDVDPRFWL 83

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P    ++ + +++ PH CRL D+TY API+V I+Y +G    K+ +++N V
Sbjct: 84   KYTDINVGFPDRNELEAIDKRVTPHECRLRDITYGAPIVVTIQYTRG----KSIVQRN-V 138

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G+ EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 139  NIGRLPIMLRSSKCVLTGRTEAQLARMTECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 198

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            +TD  KG + AS TSST   +KSKT +  +KG++YL  N   + +PI++ +KA+G++SD+
Sbjct: 199  ETDTVKGVVQASCTSSTHGGLKSKTYVATKKGRIYLRHNSIHEDVPIVIALKALGIQSDK 258

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y      ++E+ A L +YT+++ALEY+  +VK  R   G P       
Sbjct: 259  EILLLTAGTTEAYKNTFSANLEDAAKLGVYTRQQALEYIGSRVKINRRVMG-PRRPAWEE 317

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV+  +FR K  +VA M RR++ AM +++ +DD+DYVGNKRLEL+GQ
Sbjct: 318  ALEALATIVLAHVPVNGLDFRSKAIFVATMTRRVLMAMQDENMVDDRDYVGNKRLELAGQ 377

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGNF 432
            L++LLFEDLFKT  S ++  +D +L KPSR+S FD   +  +  D +T G  R +STGN+
Sbjct: 378  LLALLFEDLFKTYNSNLKIAIDKVLKKPSRTSEFDAYNTMQMQGDHLTSGFVRAISTGNW 437

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWG+LCP DT
Sbjct: 438  SLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDT 497

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD EE P+  L + LG+ED+ L +G E++ P  F+V  NG 
Sbjct: 498  PEGEACGLVKNLALMTHITTDVEEEPITRLAFMLGIEDINLTTGTEIYGPGVFVVNVNGT 557

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            I+G  R P  F    R LRRA +  EFVSV++N     V+IASDGGR+CRP +I + G  
Sbjct: 558  IIGVTRYPARFVAQFRSLRRARRFSEFVSVYINHHHHAVHIASDGGRICRPAIIVENGRP 617

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            ++   HM  L  G  +FDDFLR+GL+EYLDVNEEN+  IALYE D  P TTH+EIEPFTI
Sbjct: 618  KVASEHMMHLKKGNVTFDDFLRKGLVEYLDVNEENDTYIALYESDIVPATTHLEIEPFTI 677

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ+ R+D+LLYL VYPQ+P++ T+T
Sbjct: 678  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQMNRIDTLLYLSVYPQQPMVKTKT 737

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+GYD+L AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY N
Sbjct: 738  IELIGYDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPN 797

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DR+       P  E  Q+    N    I+  DGLA  GE + P DVY+NK+SP  T 
Sbjct: 798  GTFDRLA----DAPLDENGQL----NKKYDIIQSDGLAGVGERVDPGDVYVNKQSP--TN 847

Query: 853  GSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
             +  + TGQ  S  Y++   TYK P      +D+V +   +N    IK LIR TRRPELG
Sbjct: 848  ATDNTFTGQAASVPYKNTPLTYKSPVAGN--IDKVMISDTENDQTLIKVLIRQTRRPELG 905

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IV QED PF++ GI PD IMNPHGFPSRMTVGKMIELL GKAGV 
Sbjct: 906  DKFSSRHGQKGVCGLIVNQEDMPFNDDGINPDTIMNPHGFPSRMTVGKMIELLAGKAGVL 965

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G+  YG+AFG        VE +S  L+ HGFSY GKDM+ SGITG PL+AY++ GPIYY
Sbjct: 966  AGKLQYGTAFG-----GSKVEDMSRILIDHGFSYAGKDMLTSGITGEPLEAYVYFGPIYY 1020

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERLM
Sbjct: 1021 QKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLM 1080

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSD FEV  C  CGL+GY       G C+ CK+   ++ + +PYA KLL QEL +MN+V
Sbjct: 1081 ISSDKFEVNACEECGLMGY------NGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNVV 1134

Query: 1152 PRLKLAEA 1159
            PRL L +A
Sbjct: 1135 PRLILDDA 1142


>gi|392587347|gb|EIW76681.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1143

 Score = 1314 bits (3401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1145 (56%), Positives = 836/1145 (73%), Gaps = 37/1145 (3%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFK 83
            P+K+V DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ IV+AN+++ S +DP  +L++ 
Sbjct: 27   PIKNVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYT 86

Query: 84   DVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
            D+ +G P  T +D + + + PH CRL D+TY+APILV I+Y +G    K  +++ +V IG
Sbjct: 87   DIHVGFPDRTDLDAIDKSITPHECRLRDITYSAPILVTIQYTRG----KNVVKRPNVNIG 142

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            R+PIMLRS +C+L GK EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I++TD
Sbjct: 143  RLPIMLRSSKCILTGKSEAQLARMTECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVETD 202

Query: 203  K-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
              KG + +S TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G++SD+E++
Sbjct: 203  PVKGVVQSSCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDKEIL 262

Query: 261  QMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGRAFS 317
             +  G    Y      ++E+ A L ++T+ +ALE++  +VK  R   G P       A  
Sbjct: 263  LLTAGNTEAYKLAFSANLEDAARLGVFTRHQALEWIGTRVKVNRKVVG-PRRPAWEEALE 321

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             L  + LA+VPV+  +FRPK  +VA M RR++  M ++  +DD+DYVGNKRLEL+GQL++
Sbjct: 322  ALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMCMDDEKMVDDRDYVGNKRLELAGQLLA 381

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGNFDVK 435
            LLFEDLFKT  + ++  +D +L KPSR++ FD   +     D IT G  R +STGN+ +K
Sbjct: 382  LLFEDLFKTFNTNLKSAIDKVLKKPSRTNEFDAFNTMQFQGDHITSGFVRAISTGNWSLK 441

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DTPEG
Sbjct: 442  RFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEG 501

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD EE P+I + Y LGVED+ L SG E++ P++F+V  NG I+G
Sbjct: 502  EACGLVKNLALMTHITTDVEEEPIIRIAYMLGVEDISLASGTEIYGPHTFVVNVNGTIIG 561

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R P  F    R+LRRAG+  EFV V+VN   R V+IASDGGR+CRP++I + G  R+ 
Sbjct: 562  LTRYPTRFVTNFRRLRRAGRFSEFVGVYVNHHHRTVHIASDGGRICRPMIIVEDGRPRVN 621

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              H+  L  G  SFDDFLR+GL+EYLDVNEEN++ IALYE D    TTH+EIEPFTILG 
Sbjct: 622  SGHISLLKQGHLSFDDFLRQGLVEYLDVNEENDSYIALYESDIVATTTHLEIEPFTILGA 681

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL VYPQ+P++ T+TIEL
Sbjct: 682  VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIEL 741

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            +GYD+L AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY N T 
Sbjct: 742  IGYDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTF 801

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DR+       P  +  Q+    +++ L    DGLA  GE + P DVY+NK++P  T  + 
Sbjct: 802  DRLA----DAPLDDNGQIQKKYDIIQL----DGLAGVGERVDPGDVYVNKQTP--TNAND 851

Query: 856  MSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
             + TGQ  +  Y++A  +YK P      +D++ +   +N    IK LIR TRRPELGDKF
Sbjct: 852  NTFTGQAAAVPYKNAPLSYKSP--VAGYIDKLMVSDTENDQTLIKVLIRQTRRPELGDKF 909

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV  G+
Sbjct: 910  SSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLSGKAGVLSGK 969

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
              YG+AFG        VE +S  L++HGFSY GKDM+ SGITG  L+AY++ GPIYYQKL
Sbjct: 970  LQYGTAFG-----GSKVEDMSRILIEHGFSYAGKDMLTSGITGELLEAYVYFGPIYYQKL 1024

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERLM+SS
Sbjct: 1025 KHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISS 1084

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D FEV  C+ CGL+GY       G C  CK+   ++ + +PYA KLL QEL +MN+VPRL
Sbjct: 1085 DKFEVNACQECGLMGY------NGWCPYCKSSKQMAKLTIPYAAKLLFQELMAMNVVPRL 1138

Query: 1155 KLAEA 1159
             L +A
Sbjct: 1139 ILDDA 1143


>gi|409043140|gb|EKM52623.1| hypothetical protein PHACADRAFT_100019 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1141

 Score = 1313 bits (3399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1150 (56%), Positives = 834/1150 (72%), Gaps = 40/1150 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+K+V DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I+RAN ++ S +DP  +L
Sbjct: 21   LTDPIKAVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKSILRANSKVTSDVDPRFWL 80

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P  T  D V + + PH CRL D TY+APIL  I+Y +G    K  + + +V
Sbjct: 81   KYTDIHVGFPDRTDPDAVDKSVTPHECRLRDTTYSAPILATIQYTRG----KNVVRRPNV 136

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G+ E +LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 137  NIGRLPIMLRSNKCVLSGRTEIQLARMSECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 196

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            + D  KG + AS TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G +SD+
Sbjct: 197  EVDPVKGVVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGFQSDK 256

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G +  Y +   P++EE A   ++T+ +ALEY+  +VK  R   G P       
Sbjct: 257  EILLLTAGNNEAYKSAFSPNLEEAAKSGVFTKHQALEYIGSRVKVNRKVIG-PRRPAWEE 315

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  +L  + LA+VPV N +FR K  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 316  ALEVLATIVLAHVPVVNMDFRGKAIFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQ 375

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD---LSQFIVRDSITVGLERTLSTGN 431
            L++LLFEDLFKT  + ++  +D +L KPSR+S FD     QF+  D IT G  R +STGN
Sbjct: 376  LLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFNTMQFM-GDHITAGFVRAISTGN 434

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP D
Sbjct: 435  WSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 494

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD +E P++ L Y LGVED+   +G E++ P++++V  NG
Sbjct: 495  TPEGEACGLVKNLALMTHITTDVDEEPIVRLAYMLGVEDISTATGTEIYGPHTYVVNVNG 554

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F    RKLRRAG++ EFVSV++N   R V IASDGGR+CRP++IAD+G 
Sbjct: 555  SIIGLTRYPGRFVHNFRKLRRAGRLSEFVSVYINHHHRTVLIASDGGRICRPMIIADRGR 614

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             R+   H+  L +G  +FDDFL++GL+EYLDVNEEN++ IALYE D  P TTH+EIEPFT
Sbjct: 615  PRVTTEHILLLKEGKMTFDDFLKQGLVEYLDVNEENDSYIALYESDIVPTTTHLEIEPFT 674

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL VYPQ+P++ T+
Sbjct: 675  ILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQQSRIDTLLYLSVYPQQPMVKTK 734

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYD+L AGQNATVAVMSYSGYDIEDA++ NK+SLDRG+GR  V++K   + +KY 
Sbjct: 735  TIELIGYDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRVQVLRKNATLIRKYP 794

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DR+       P  E  Q+    +    I+  DGLA  GE + P DVYINK++P  T
Sbjct: 795  NGTYDRLA----DAPVDEGSQIQKKYD----IIQADGLAGVGERVDPGDVYINKQTP--T 844

Query: 852  RGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
              +  + TGQ  +  Y+++  TYK P      +D+V +   +N    IK LIR TRRPEL
Sbjct: 845  NANDNTFTGQAATVPYKNSPMTYKSP--VAGYIDKVMVTDTENDQTLIKVLIRQTRRPEL 902

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV
Sbjct: 903  GDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGV 962

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+  YG+AFG        VE +S  LV++GFSY GKDM+ SGITG P++AY++ GPIY
Sbjct: 963  LAGKLQYGTAFG-----GSKVEDMSRILVENGFSYAGKDMLTSGITGEPMEAYVYFGPIY 1017

Query: 1031 YQ-KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YQ  L HMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ER
Sbjct: 1018 YQVSLSHMVVDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLER 1077

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD FEV  C  CGL+GY       G C+ CK+   ++ + +PYA KLL QEL +MN
Sbjct: 1078 LMISSDKFEVNACEECGLMGY------NGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMN 1131

Query: 1150 IVPRLKLAEA 1159
            +VPRL L +A
Sbjct: 1132 VVPRLVLDDA 1141


>gi|393235423|gb|EJD42978.1| DNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
          Length = 1129

 Score = 1313 bits (3398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1152 (55%), Positives = 845/1152 (73%), Gaps = 42/1152 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L++  +SV DK+ LLP FL+V+GLVKQH+DSFNYFV+  +  I++AN+++ S +DP  +L
Sbjct: 5    LSSTPQSVEDKWLLLPAFLRVKGLVKQHIDSFNYFVDVDLNNILKANNKVTSDVDPRFWL 64

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+R+G+P  T  D +   + PH CRL D TY+APILV ++Y +G    K  ++K +V
Sbjct: 65   KYTDIRVGRPDRTDADAIDRSITPHECRLRDTTYSAPILVTVQYTRG----KYVVKKQNV 120

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G +EA+LAR  ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+I+
Sbjct: 121  TIGRMPIMLRSNKCVLTGMNEAQLARAIECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV 180

Query: 200  DTD-KKGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            + D  KG + ASVTSST   +K+KT +  +KG +YL  N   + +PI++ +KA+G++SD+
Sbjct: 181  ERDPTKGVVQASVTSSTHGGMKTKTYVVTKKGNIYLRHNSIHEDVPIVIALKALGLQSDK 240

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFG--SPPNDRE 312
            E++ +  G    + ++  P++EE + L ++T+++AL+Y+  +VK  R   G   PP +  
Sbjct: 241  EILLVTAGGTEEFRSIFSPNLEEASKLGVFTRQQALDYIGARVKINRRVIGPRRPPWED- 299

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A   L  V LA++PV N +FRPK  +VA M RR++ A+ ++  +DD+DYVGNKRLEL+
Sbjct: 300  --ALEALATVILAHLPVENFDFRPKAVFVATMTRRVLMAVQDEKLVDDRDYVGNKRLELA 357

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLSTG 430
            GQL++LLFEDLFK   +E++ ++D +L KPSR+S FD  Q +  + D IT G  R +STG
Sbjct: 358  GQLLALLFEDLFKRFNTELKSSIDKVLKKPSRTSEFDAGQTLQFMGDHITAGFVRAISTG 417

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+ +KRFKM R G+T VL+RLSFI  LG MTR++ QFEK+RKVSGPRALQPSQWGMLCP 
Sbjct: 418  NWSLKRFKMERAGVTHVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPS 477

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            DTPEGEACGLVKNLALMTH+TTD EE P+I L + LGVED+ L +G E++  N+F+V  N
Sbjct: 478  DTPEGEACGLVKNLALMTHITTDVEEEPIIRLAFMLGVEDVCLATGAEMYEHNNFMVHVN 537

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            GLI+G  R P  F   +RKLRRAG+I EFVSV++N   R VYIA DGGR+CRPL+I ++G
Sbjct: 538  GLIIGLTRTPLRFVAQLRKLRRAGRISEFVSVYINHHHRAVYIACDGGRICRPLIIVERG 597

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD----ATPDTTHIE 666
               +   H++ L  G  +FD FL+ GL+EYLDVNEEN++ IALYE D     +  TTH+E
Sbjct: 598  QPLVSVEHVELLKAGKMNFDSFLKLGLVEYLDVNEENDSRIALYERDIVLTGSGRTTHLE 657

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLVYPQ+P
Sbjct: 658  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQKP 717

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ TRTIELVGY++L AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   +
Sbjct: 718  MVKTRTIELVGYERLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNVTM 777

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +KY N T DR+       P  E   V    +++ +    DG+A  GE + P D+Y+NK+
Sbjct: 778  IRKYPNGTHDRLA----DAPKDENGNVQKRYDIIQM----DGIAGVGERVDPGDIYVNKQ 829

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P     +  +  G   + YR+   +YK P      +D+V L   +N +  +K LIR TR
Sbjct: 830  TPTNANDNSAAMDGAVAASYRNTPMSYKSP--VAGYIDKVMLSETENDNTLVKVLIRQTR 887

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPELGDKFSSRHGQKGVCG IV QED PF+++G+CPD IMNPHGFPSRMTVGKMIEL+ G
Sbjct: 888  RPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGVCPDSIMNPHGFPSRMTVGKMIELISG 947

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G+  YG+AFG        VE +S+ L++HGFSY+GKDM+ SGITG  L+A++F 
Sbjct: 948  KAGVLTGKLRYGTAFG-----GSKVEDMSKILIEHGFSYSGKDMLTSGITGESLEAFVFF 1002

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPIYYQKLKHMV+DKMHAR  GPR  LTRQPTEGR+R+GGLR+GEMERDCLI YGA+ L+
Sbjct: 1003 GPIYYQKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLL 1062

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD FEV  C  CG++GY       G C  CK    ++ + +PYA KLL QEL 
Sbjct: 1063 LERLMISSDKFEVCACETCGIMGY------NGWCPYCKTSQKVAKLTIPYAAKLLFQELM 1116

Query: 1147 SMNIVPRLKLAE 1158
            +MN++PR+ L +
Sbjct: 1117 AMNVMPRMVLED 1128


>gi|390596427|gb|EIN05829.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1143

 Score = 1313 bits (3398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1149 (56%), Positives = 839/1149 (73%), Gaps = 39/1149 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            LA PVK+V DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I++AN+++ S +DP  +L
Sbjct: 24   LADPVKNVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWL 83

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P  T  D + + + PH CRL D TY+APILV I+Y +G    K+ + + +V
Sbjct: 84   KYTDIHVGFPDRTDADAIDKSVTPHECRLRDTTYSAPILVTIQYTRG----KSVVRRPNV 139

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGRIPIMLRS +CVL G++EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 140  SIGRIPIMLRSNKCVLTGRNEAQLARMLECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 199

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            +TD  K  + AS TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G ++D+
Sbjct: 200  ETDPVKDVVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGFQADK 259

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y +   P++EE A L ++T+ +ALEY+  +VK  R   G P       
Sbjct: 260  EILLLTAGNSEVYKSAFSPNLEEAAKLGVFTRHQALEYIGSRVKVNRRVIG-PRRPAWEE 318

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV+  +FRPK  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 319  AMEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMAMADEKMVDDRDYVGNKRLELAGQ 378

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS---QFIVRDSITVGLERTLSTGN 431
            L++LLFEDLFKT  S ++  +D +L KPSR++ FD     QF+  D IT G  R +STGN
Sbjct: 379  LLALLFEDLFKTFNSNLKSAIDKVLKKPSRTNEFDAWNTMQFM-GDHITSGFVRAISTGN 437

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP D
Sbjct: 438  WSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 497

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD EE P+I + Y LGVED+ L SG E++ P++F+V  NG
Sbjct: 498  TPEGEACGLVKNLALMTHITTDVEEEPIIRIAYLLGVEDICLASGAEVYGPHTFVVHVNG 557

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F    RKLRRAG+  EFVS++VN     V+IA+DGGR+CRP++I +   
Sbjct: 558  TIIGLTRYPARFVSNFRKLRRAGRFSEFVSIYVNHHHSTVHIATDGGRICRPMIIVENQR 617

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             R+   H+  L  G  +FDDFL++GL+EYLDVNEEN++ IALYE +    TTH+EIEPFT
Sbjct: 618  PRVTSDHILLLKKGQVNFDDFLKKGLVEYLDVNEENDSYIALYEANIVSSTTHLEIEPFT 677

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I FNQL R+++LLYL  YPQ+P++ T+
Sbjct: 678  ILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGFNQLNRIETLLYLHCYPQQPMVKTK 737

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYDKL AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY 
Sbjct: 738  TIELIGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNQTLIRKYP 797

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DR+       P  E   V    +++ +    DGLA  GE + P DVYINK++P  T
Sbjct: 798  NGTFDRLA----DAPVDENGGVQKKYDIIQM----DGLAGVGERVDPGDVYINKQTP--T 847

Query: 852  RGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
              +  +  GQ  S  Y++A  TYK P   +  +D+V +   +N    IK L+R TRRPEL
Sbjct: 848  NANDNAFVGQAASVPYKNAPMTYKSP--VSGYIDKVMITDTENEQTLIKVLMRQTRRPEL 905

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV
Sbjct: 906  GDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDSIMNPHGFPSRMTVGKMIELLAGKAGV 965

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+  YG+AFG        VE +S  L+++GF+Y GKDM+ SGITG  ++AY++ GPIY
Sbjct: 966  LSGKLQYGTAFG-----GSKVEDMSRILIENGFNYAGKDMLTSGITGEQMEAYVYFGPIY 1020

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERL
Sbjct: 1021 YQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERL 1080

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            M+SSD FEV  C  CGL+GY       G C+ CK+   ++ + +PYA KLL QEL +MN+
Sbjct: 1081 MISSDKFEVNACAECGLMGY------NGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNV 1134

Query: 1151 VPRLKLAEA 1159
            VPRL+L +A
Sbjct: 1135 VPRLELDDA 1143


>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
          Length = 1158

 Score = 1313 bits (3398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1163 (56%), Positives = 839/1163 (72%), Gaps = 39/1163 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDP 76
            ++L  PVKSV DK++LLP FL++RGLVKQH+DSF+YF +  +R IVRA  N+ + S  DP
Sbjct: 11   EELEKPVKSVQDKWKLLPYFLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADP 70

Query: 77   SIFLRFKDVRIGQPSMTVDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              FL++ D+++G PS+  +  VS  + PH CRL D TYAAP+ V++ Y +G+      + 
Sbjct: 71   KFFLQYTDIQLGAPSIDEEAFVSASVTPHQCRLRDRTYAAPVYVSVRYRRGNKI----VT 126

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
             N V+IGRIPIMLRS RCVL GK EA LA+L ECP DPGGYFI++G EKV+LI EQLSKN
Sbjct: 127  NNKVLIGRIPIMLRSSRCVLAGKSEAALAKLKECPYDPGGYFIVRGVEKVVLIHEQLSKN 186

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            RVII+ D K N+ AS+TSST   KS+T I + KG++YL  N F   IPI++V + MG+ES
Sbjct: 187  RVIIEEDGKRNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVES 246

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST------------ 303
            DQE+V +VG +P     +  S EE ++L ++TQ++ALEY+  K+   T            
Sbjct: 247  DQEIVSLVGSEPDICDAMSASFEEASDLKVFTQQQALEYIGSKMNTLTKIGAMGGRNRGG 306

Query: 304  FGSPPNDRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
             G P  DR     A S L ++ L +VP  N NFR K  YVA ++RR++    ++  +DDK
Sbjct: 307  AGRPQQDRNLVDAARSALANLVLNHVPCENFNFRLKSIYVAHIVRRILFTDKDRTRLDDK 366

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITV 421
            DY GNKRLEL+GQL+SLLFEDLFK   S++++  D++LSKP+R+S FD+ + +  D+IT 
Sbjct: 367  DYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDIIKCVRTDTITQ 426

Query: 422  GLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            G    LSTGN+ +KRF+M R G+T VL+RLS++  LG MTR+S QFEK+RKVSGPR+LQP
Sbjct: 427  GFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQP 486

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            SQWGMLCP DTPEGEACGLVKNLAL+ HVT+DEE GP+  LC+ LGV D+ L SGEE+++
Sbjct: 487  SQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEPGPIKRLCFDLGVTDVSLSSGEEINH 546

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601
             +++LV+ NG+I+G H  P+ F   +R++RRAG IGEFVSV +++ QR VYIASDGGRVC
Sbjct: 547  ASNYLVMLNGVIIGTHVNPRAFVTRLRRIRRAGLIGEFVSVMIHDVQRVVYIASDGGRVC 606

Query: 602  RPLVIADKGI--SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            RPL++ D     +R+ + H+ EL  GVR     + EG +EY+DVNEENN L+ L+E +  
Sbjct: 607  RPLLLIDPVTHRTRLTQRHLDELRSGVRDLSSLIVEGCVEYVDVNEENNCLVTLHESEIG 666

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
              TTH+EI+P TILGV++GLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+D+LLY 
Sbjct: 667  DRTTHLEIDPVTILGVVSGLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYT 726

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            +VYPQ P++ TR ++LV +D++ AGQNA VAVMSYSGYDIEDAIV+NK+SLDRGFGRC+V
Sbjct: 727  MVYPQMPMVKTRVLDLVNFDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMV 786

Query: 780  VKKYTAINQKYANSTSDRILRP----DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
             KKY  + +KYAN + DRI+ P        PG   M      N     LD DG++  G I
Sbjct: 787  FKKYQTMIKKYANGSYDRIVGPPDFDSLAAPGGAGMGF---RNAKYSSLDADGISRVGGI 843

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            ++   + INKE P +   S+       D  Y  +  TYKGP      VD+V L S +   
Sbjct: 844  VQNGAIMINKEQPTQFNDSV-DGRDPLDVTYSPSPTTYKGP--IPAYVDKVLLTSSEANH 900

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K LIR TRRPE+GDKFSSRHGQKGVCGTI QQED PF+++GICPDLIMNPHGFPSRM
Sbjct: 901  FLVKVLIRQTRRPEIGDKFSSRHGQKGVCGTIRQQEDMPFNDQGICPDLIMNPHGFPSRM 960

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGKMIEL+ GKAGV  GR  YG+AFGE  G AD V   S  LVK+GF+Y GKD + SGI
Sbjct: 961  TVGKMIELIAGKAGVLTGRRAYGTAFGEKYGSADHVLDCSRELVKNGFNYAGKDYLTSGI 1020

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG P++ YIFMGPIYYQKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERD
Sbjct: 1021 TGEPIECYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 1080

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CLI YGASML+ ERLM+SSD F   VC+ C +LGY       G C  CK+ + + S+++P
Sbjct: 1081 CLIGYGASMLLMERLMLSSDAFSADVCQGCRMLGY------EGWCQHCKSEEKVVSIRIP 1134

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YACKLL QELQ+MNIVPRL L E
Sbjct: 1135 YACKLLFQELQAMNIVPRLTLKE 1157


>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score = 1312 bits (3396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1168 (56%), Positives = 835/1168 (71%), Gaps = 47/1168 (4%)

Query: 5    QVEGSPKDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVN 57
             V    KDE   D        +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+
Sbjct: 11   HVHKHVKDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVD 70

Query: 58   TGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAP 116
            T ++KI++AN  I+S +DP  +L++ D+R+G+ S +     + L P H CRL DMTY+AP
Sbjct: 71   TDLKKIIKANQLILSDVDPEFYLKYIDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAP 128

Query: 117  ILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            I V+IEY +G    +  +   DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGY
Sbjct: 129  IYVDIEYTRG----RNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGY 184

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLL 235
            FI+ GTEKV+L+QEQLSKNR+I++ D KKG + ASVTSST   KSKT +  + GK+YL  
Sbjct: 185  FIVNGTEKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKH 244

Query: 236  NQFVKKIPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEY 294
            N   ++IPI +V+KA G+ SD E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY
Sbjct: 245  NSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEY 304

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            +  KVK          +EG     +    +A++ V   +FR K  Y+A+M RR+V AM N
Sbjct: 305  IGAKVKTMRRQKLTILQEG--VEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYN 362

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQ 412
               +DD+DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS 
Sbjct: 363  PKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSI 422

Query: 413  FIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
             +  ++IT GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRK
Sbjct: 423  NVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRK 482

Query: 473  VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
            VSGPRALQPSQ+GMLC  DTPEGEACGLVKNLALMTH+TTD+EE P+ +LCY LGVED+ 
Sbjct: 483  VSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKNLCYVLGVEDIT 542

Query: 533  LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVY 592
            L+    LH   ++ V  NG ++G  R P  F    R LRR GK+ EF+S++ N  Q  V+
Sbjct: 543  LIDSASLHL--NYGVYLNGTLIGSIRFPIKFVTQFRNLRRTGKVSEFISIYSNSHQMAVH 600

Query: 593  IASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
            IA+DGGR+CRPL+I   G SR+K+ H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IA
Sbjct: 601  IATDGGRICRPLIIVSSGQSRVKDTHLRQLLDGKLDFDDFLKLGLVEYLDVNEENDSYIA 660

Query: 653  LYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
            LYE D  P  TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R
Sbjct: 661  LYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 720

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            +D+LLYL+ YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DR
Sbjct: 721  IDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDR 780

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            GFGRC   +K T + ++YAN T D I  +R D  G    + Q           L  DGL 
Sbjct: 781  GFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQS----------LGPDGLG 830

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 890
              G  ++   +YINK  P  +  +         ++YR A   Y+GP  E   +D+V +  
Sbjct: 831  EVGMKVQSGQIYINKSVPTNSADAPNPNIVNVQTQYREAPVIYRGP--EPSHIDQVMMSV 888

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
              N    IK L+R +RRPELGDKFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHG
Sbjct: 889  SDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHG 948

Query: 951  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1010
            FPSRMTVGKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM
Sbjct: 949  FPSRMTVGKMIELISGKAGVMNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDM 1003

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1070
            +YSGITG  LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+G
Sbjct: 1004 LYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1063

Query: 1071 EMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNIS 1130
            EMERDC+IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G C+TCK+ +NI 
Sbjct: 1064 EMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENII 1117

Query: 1131 SMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             M +PYA KLL QEL SMNI PRL+L +
Sbjct: 1118 KMTIPYAAKLLFQELLSMNIAPRLRLED 1145


>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
          Length = 1149

 Score = 1312 bits (3395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1162 (56%), Positives = 833/1162 (71%), Gaps = 47/1162 (4%)

Query: 11   KDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            KDE   D        +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI
Sbjct: 17   KDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKI 76

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIE 122
            ++AN  I+S +DP  +L++ D+R+G+ S +     + L P H CRL DMTY+API V+IE
Sbjct: 77   IKANQLILSDVDPEFYLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIE 134

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +G    +  +   DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGYFI+ GT
Sbjct: 135  YTRG----RNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGT 190

Query: 183  EKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            EKV+L+QEQLSKNR+I++ D KKG + ASVTSST   KSKT +  + GK+YL  N   ++
Sbjct: 191  EKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEE 250

Query: 242  IPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IPI VV+KA G+ SD E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK
Sbjct: 251  IPIAVVLKAGGIVSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVK 310

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                      +EG     +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD
Sbjct: 311  TMRRQKLSILQEG--IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDS 418
            +DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++
Sbjct: 369  RDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNN 428

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            IT GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRA
Sbjct: 429  ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 488

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQ+GMLC  DTPEGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    
Sbjct: 489  LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSAS 548

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
            LH   ++ V  NG ++G  R P  F    R+LRR GK+ EF+S++ N  Q  V+IA+DGG
Sbjct: 549  LHL--NYGVYLNGTLVGSIRFPTKFVTQFRRLRRTGKVSEFISIYSNSHQMAVHIATDGG 606

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            R+CRPL+I   G SR+K+ H+++LL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D 
Sbjct: 607  RICRPLIIVSGGQSRVKDTHLRQLLEGKLDFDDFLKLGLVEYLDVNEENDSYIALYEKDI 666

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
             P  TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY
Sbjct: 667  IPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLY 726

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            L+ YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC 
Sbjct: 727  LMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCE 786

Query: 779  VVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              +K T + ++YAN T D I  +R D  G    + Q           L  DGL   G  +
Sbjct: 787  TRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQS----------LGPDGLGEVGMKV 836

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            K   +YINK  P  +  +         ++YR A   Y+GP  E   +D+V +    N   
Sbjct: 837  KSGQIYINKSVPTNSTDAPNPNNVNVQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQA 894

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK L+R  RRPELGDKFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMT
Sbjct: 895  LIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMT 954

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGIT
Sbjct: 955  VGKMIELISGKAGVMNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PY
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPY 1123

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL QEL SMNI PRL+L +
Sbjct: 1124 AAKLLFQELLSMNIAPRLRLED 1145


>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
          Length = 1149

 Score = 1311 bits (3394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1162 (56%), Positives = 833/1162 (71%), Gaps = 47/1162 (4%)

Query: 11   KDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            KDE   D        +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI
Sbjct: 17   KDEAFDDLLKPVYKGKKLTDEINTAXDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKI 76

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIE 122
            ++AN  I+S +DP  +L++ D+R+G+ S +     + L P H CRL DMTY+API V+IE
Sbjct: 77   IKANQLILSDVDPEFYLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIE 134

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +G    +  +   DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGYFI+ GT
Sbjct: 135  YTRG----RNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGT 190

Query: 183  EKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            EKV+L+QEQLSKNR+I++ D KKG + ASVTSST   KSKT +  + GK+YL  N   ++
Sbjct: 191  EKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEE 250

Query: 242  IPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IPI +V+KA G+ SD E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK
Sbjct: 251  IPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVK 310

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                      +EG     +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD
Sbjct: 311  TMRRQKLTILQEG--IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDS 418
            +DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++
Sbjct: 369  RDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNN 428

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            IT GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRA
Sbjct: 429  ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 488

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQ+GMLC  DTPEGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    
Sbjct: 489  LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSAS 548

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
            LH   ++ V  NG ++G  R P  F    R LRR GK+ EF+S++ N  Q  V+IA+DGG
Sbjct: 549  LHL--NYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGG 606

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            R+CRPL+I   G SR+K+ H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D 
Sbjct: 607  RICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDI 666

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
             P  TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY
Sbjct: 667  VPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLY 726

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            L+ YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC 
Sbjct: 727  LMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCE 786

Query: 779  VVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              +K T + ++YAN T D I  +R D  G       +  H +     L  DGL   G  +
Sbjct: 787  TRRKTTTVLKRYANHTQDIIGGMRVDENG-----XPIWQHQS-----LGPDGLGEVGMKV 836

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +   +YINK  P  +  +         ++YR A   Y+GP  E   +D+V +    N   
Sbjct: 837  QSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQA 894

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK L+R  RRPELGDKFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMT
Sbjct: 895  LIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMT 954

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGIT
Sbjct: 955  VGKMIELISGKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PY
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPY 1123

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL QEL SMNI PRL+L +
Sbjct: 1124 AAKLLFQELLSMNIAPRLRLED 1145


>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
 gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide
 gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
 gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
 gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
 gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
 gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
 gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1149

 Score = 1311 bits (3392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1162 (56%), Positives = 832/1162 (71%), Gaps = 47/1162 (4%)

Query: 11   KDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            KDE   D        +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI
Sbjct: 17   KDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKI 76

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIE 122
            ++AN  I+S +DP  +L++ D+R+G+ S +     + L P H CRL DMTY+API V+IE
Sbjct: 77   IKANQLILSDVDPEFYLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIE 134

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +G    +  +   DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGYFI+ GT
Sbjct: 135  YTRG----RNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGT 190

Query: 183  EKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            EKV+L+QEQLSKNR+I++ D KKG + ASVTSST   KSKT +  + GK+YL  N   ++
Sbjct: 191  EKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEE 250

Query: 242  IPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IPI +V+KA G+ SD E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK
Sbjct: 251  IPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVK 310

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                      +EG     +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD
Sbjct: 311  TMRRQKLTILQEG--IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDS 418
            +DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++
Sbjct: 369  RDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNN 428

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            IT GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRA
Sbjct: 429  ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 488

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQ+GMLC  DTPEGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    
Sbjct: 489  LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSAS 548

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
            LH   ++ V  NG ++G  R P  F    R LRR GK+ EF+S++ N  Q  V+IA+DGG
Sbjct: 549  LHL--NYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGG 606

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            R+CRPL+I   G SR+K+ H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D 
Sbjct: 607  RICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDI 666

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
             P  TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY
Sbjct: 667  VPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLY 726

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            L+ YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC 
Sbjct: 727  LMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCE 786

Query: 779  VVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              +K T + ++YAN T D I  +R D  G    + Q           L  DGL   G  +
Sbjct: 787  TRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS----------LGPDGLGEVGMKV 836

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +   +YINK  P  +  +         ++YR A   Y+GP  E   +D+V +    N   
Sbjct: 837  QSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQA 894

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK L+R  RRPELGDKFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMT
Sbjct: 895  LIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMT 954

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGIT
Sbjct: 955  VGKMIELISGKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PY
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPY 1123

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL QEL SMNI PRL+L +
Sbjct: 1124 AAKLLFQELLSMNIAPRLRLED 1145


>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1149

 Score = 1310 bits (3391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1162 (56%), Positives = 832/1162 (71%), Gaps = 47/1162 (4%)

Query: 11   KDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            KDE   D        +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI
Sbjct: 17   KDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKI 76

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIE 122
            ++AN  I+S +DP  +L++ D+R+G+ S +     + L P H CRL DMTY+API V+IE
Sbjct: 77   IKANQLILSDVDPEFYLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIE 134

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +G    +  +   DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGYFI+ GT
Sbjct: 135  YTRG----RNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGT 190

Query: 183  EKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            EKV+L+QEQLSKNR+I++ D KKG + ASVTSST   KSKT +  + GK+YL  N   ++
Sbjct: 191  EKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEE 250

Query: 242  IPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IPI +V+KA G+ SD E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK
Sbjct: 251  IPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVK 310

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                      +EG     +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD
Sbjct: 311  TMRRQKLTILQEG--IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDS 418
            +DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++
Sbjct: 369  RDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNN 428

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            IT GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRA
Sbjct: 429  ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 488

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQ+GMLC  DTPEGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    
Sbjct: 489  LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSAS 548

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
            LH   ++ V  NG ++G  R P  F    R LRR GK+ EF+S++ N  Q  V+IA+DGG
Sbjct: 549  LHL--NYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGG 606

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            R+CRPL+I   G SR+K+ H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D 
Sbjct: 607  RICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDI 666

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
             P  TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY
Sbjct: 667  VPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLY 726

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            L+ YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC 
Sbjct: 727  LMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCE 786

Query: 779  VVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              +K T + ++YAN T D I  +R D  G    + Q           L  DGL   G  +
Sbjct: 787  TRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQS----------LGPDGLGEVGMKV 836

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +   +YINK  P  +  +         ++YR A   Y+GP  E   +D+V +    N   
Sbjct: 837  QSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQA 894

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK L+R  RRPELGDKFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMT
Sbjct: 895  LIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMT 954

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGIT
Sbjct: 955  VGKMIELISGKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PY
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPY 1123

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL QEL SMNI PRL+L +
Sbjct: 1124 AAKLLFQELLSMNIAPRLRLED 1145


>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
          Length = 1149

 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1162 (56%), Positives = 832/1162 (71%), Gaps = 47/1162 (4%)

Query: 11   KDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            KDE   D        +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI
Sbjct: 17   KDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKI 76

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIE 122
            ++AN  I+S +DP  +L++ D+R+G+ S +     + L P H CRL DMTY+API V+IE
Sbjct: 77   IKANQLILSDVDPEFYLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIE 134

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +G    +  +   DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGYFI+ GT
Sbjct: 135  YTRG----RNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGT 190

Query: 183  EKVLLIQEQLSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            EKV+L+QEQLSKNR+I++ D+K G + ASVTSST   KSKT +  + GK+YL  N   ++
Sbjct: 191  EKVILVQEQLSKNRIIVEADEKEGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEE 250

Query: 242  IPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IPI +V+KA G+ SD E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK
Sbjct: 251  IPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVK 310

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                      +EG     +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD
Sbjct: 311  TMRRQKLTILQEG--IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDS 418
            +DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++
Sbjct: 369  RDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNN 428

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            IT GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRA
Sbjct: 429  ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 488

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQ+GMLC  DTPEGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    
Sbjct: 489  LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSAS 548

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
            LH   ++ V  NG ++G  R P  F    R LRR GK+ EF+S++ N  Q  V+IA+DGG
Sbjct: 549  LHL--NYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGG 606

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            R+CRPL+I   G SR+K+ H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D 
Sbjct: 607  RICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDI 666

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
             P  TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY
Sbjct: 667  VPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLY 726

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            L+ YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC 
Sbjct: 727  LMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCE 786

Query: 779  VVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              +K T + ++YAN T D I  +R D  G    + Q           L  DGL   G  +
Sbjct: 787  TRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS----------LGPDGLGEVGMKV 836

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +   +YINK  P  +  +         ++YR A   Y+GP  E   +D+V +    N   
Sbjct: 837  QSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQA 894

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK L+R  RRPELGDKFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMT
Sbjct: 895  LIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMT 954

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGIT
Sbjct: 955  VGKMIELISGKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PY
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPY 1123

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL QEL SMNI PRL+L +
Sbjct: 1124 AAKLLFQELLSMNIAPRLRLED 1145


>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1162 (56%), Positives = 832/1162 (71%), Gaps = 47/1162 (4%)

Query: 11   KDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            KDE   D        +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI
Sbjct: 17   KDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKI 76

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIE 122
            ++AN  I+S +DP  +L++ D+R+G+ S +     + L P H CRL DMTY+API V+IE
Sbjct: 77   IKANQLILSDVDPEFYLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIE 134

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +G    +  +   DV IGR+PIMLRS +C+LY  DE+++A+L ECPLDPGGYFI+ GT
Sbjct: 135  YTRG----RNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGT 190

Query: 183  EKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            EKV+L+QEQLSKNR+I++ D KKG + ASVTSST   KSKT +  + GK+YL  N   ++
Sbjct: 191  EKVILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEE 250

Query: 242  IPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IPI +V+KA G+ SD E++Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK
Sbjct: 251  IPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVK 310

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                      +EG     +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD
Sbjct: 311  TMRRQKLTILQEG--IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDS 418
            +DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++
Sbjct: 369  RDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNN 428

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            IT GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRA
Sbjct: 429  ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 488

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQ+GMLC  DTPEGEACGJVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    
Sbjct: 489  LQPSQFGMLCTADTPEGEACGJVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSAS 548

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
            LH   ++ V  NG ++G  R P  F    R LRR GK+ EF+S++ N  Q  V+IA+DGG
Sbjct: 549  LHL--NYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGG 606

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            R+CRPL+I   G SR+K+ H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D 
Sbjct: 607  RICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDI 666

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
             P  TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY
Sbjct: 667  VPSMTHLEIEPFTILGXVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLY 726

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            L+ YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC 
Sbjct: 727  LMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCE 786

Query: 779  VVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              +K T + ++YAN T D I  +R D  G    + Q           L  DGL   G  +
Sbjct: 787  TRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQS----------LGPDGLGEVGMKV 836

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +   +YINK  P  +  +         ++YR A   Y+GP  E   +D+V +    N   
Sbjct: 837  QSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQA 894

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK L+R  RRPELGDKFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMT
Sbjct: 895  LIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMT 954

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGIT
Sbjct: 955  VGKMIELISGKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1069

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PY
Sbjct: 1070 VIAYGASQLLLERLMISSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPY 1123

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL QEL SMNI PRL+L +
Sbjct: 1124 AAKLLFQELLSMNIAPRLRLED 1145


>gi|336374505|gb|EGO02842.1| hypothetical protein SERLA73DRAFT_84701 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336387393|gb|EGO28538.1| hypothetical protein SERLADRAFT_359856 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1162

 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1168 (55%), Positives = 841/1168 (72%), Gaps = 58/1168 (4%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ IV+AN+++ S +DP  +L
Sbjct: 24   LVDPIKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWL 83

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P  T +D + + + PH CRL D+TY+AP++V I+Y +G    K+ + + +V
Sbjct: 84   KYTDINVGYPDRTDLDAIDKSITPHECRLRDITYSAPVVVTIQYTRG----KSVVRRPNV 139

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +C+L GK+EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 140  NIGRLPIMLRSNKCILTGKNEAQLARMTECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 199

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            +TD  KG + AS TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G+++D+
Sbjct: 200  ETDSVKGVVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGIQADK 259

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y +    ++EE A L ++T  +ALE++  +VK  R   G P       
Sbjct: 260  EILLLTAGNTEAYKSAFSANLEEAAKLGVFTHHQALEWIGTRVKVNRKVVG-PRRPAWEE 318

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV   + R K  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 319  ALEALATIVLAHVPVKGLDLRSKAIFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQ 378

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD---LSQFIVRDSITVGLERTLSTGN 431
            L++LLFEDLFKT  S ++ ++D +L KPSR++ FD     QF   D IT G  R +STGN
Sbjct: 379  LLALLFEDLFKTFNSNLKSSIDKVLKKPSRTNEFDAFNTMQF-QGDHITSGFIRAISTGN 437

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP D
Sbjct: 438  WSLKRFKMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 497

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD EE P++ L + LGVED+ L +G E++ P++F+V  NG
Sbjct: 498  TPEGEACGLVKNLALMTHITTDVEEEPIVRLAFMLGVEDISLATGTEIYGPHTFVVNVNG 557

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F    R+LRRAG++ EFV V++N     V+IASDGGR+CRP++I + G 
Sbjct: 558  TIVGLTRYPTRFVSNFRRLRRAGRLSEFVGVYINHHHHAVHIASDGGRICRPMIIVESGR 617

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             R+   H+  L  GV +FDDFLR+GL+EYLDVNEEN++ IALYE D  P TTH+EIEPFT
Sbjct: 618  PRVTSDHIMLLKKGVATFDDFLRKGLVEYLDVNEENDSYIALYESDIVPTTTHLEIEPFT 677

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL VYPQ+P++ T+
Sbjct: 678  LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTK 737

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYD+L AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY 
Sbjct: 738  TIELIGYDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYP 797

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DR+       P  E  Q+    +++ L    DGLA  GE + P DVYINK++P  T
Sbjct: 798  NGTFDRLA----DAPLDENGQIQKKYDIVQL----DGLAGVGERVDPGDVYINKQTP--T 847

Query: 852  RGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
              +  S TGQ  +  Y+++  TYK P      +D+V +   +N    IK LIR TRRPEL
Sbjct: 848  NANDNSFTGQAAAVPYKNSPMTYKSP--VAGYIDKVLVSDTENDQTLIKVLIRQTRRPEL 905

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV
Sbjct: 906  GDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKAGV 965

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+  YG+AFG        VE +S  L++ GF+Y GKDM+ SGITG P++AY++ GPIY
Sbjct: 966  LSGKLQYGTAFG-----GSKVEDMSRILIEKGFNYAGKDMLTSGITGEPMEAYVYFGPIY 1020

Query: 1031 YQKL-------------------KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            YQKL                   +HMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GE
Sbjct: 1021 YQKLSEIVVAYLSSSLNSSNLATEHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGE 1080

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLI YGA+ L+ ERLM+SSD FEV  C+ CGL+GY       G C+ CK+   ++ 
Sbjct: 1081 MERDCLIGYGATQLLLERLMISSDKFEVNACQECGLMGY------NGWCTYCKSSKRMAQ 1134

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            + +PYA KLL QEL +MN++PRL L +A
Sbjct: 1135 LTIPYAAKLLFQELMAMNVIPRLVLDDA 1162


>gi|331225399|ref|XP_003325370.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
 gi|309304360|gb|EFP80951.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
          Length = 1272

 Score = 1308 bits (3386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1158 (56%), Positives = 841/1158 (72%), Gaps = 36/1158 (3%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV 71
            D +L   + L  PVK+V DK+QLLP F K + L KQHLD FNYF +  ++ I+RAN  ++
Sbjct: 139  DNELWLSKNLTDPVKTVEDKWQLLPAFFKGKRLGKQHLDLFNYFGDVDLQSILRANATVI 198

Query: 72   SGIDPSIFLRFKDVRIGQPSM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
            S +DP+  L + D+ +G+PS   T    ++++ PH CRL D+TY+API V I+Y +G+  
Sbjct: 199  SDVDPNFHLSYLDINVGEPSRLDTGSATNKRITPHECRLRDITYSAPISVTIQYTKGN-- 256

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
             K  + K  + IGRIPIMLRS +CVL GK +AELA++ ECPLDPGGYF++KGTEKV+L+Q
Sbjct: 257  -KRVLSKG-IPIGRIPIMLRSNKCVLTGKSDAELAKMTECPLDPGGYFVVKGTEKVILVQ 314

Query: 190  EQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNR++I+TD +KG I ASVTSST   KSKT +  +  K+YL  N   ++IPI + +
Sbjct: 315  EQLSKNRILIETDSRKGTIMASVTSSTHERKSKTYVVTKNSKVYLKHNSIQEEIPIAIAL 374

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK----VKRST 303
            KA G+ SD+EVVQ+V G +  Y A     +E C    ++TQ++AL Y+ GK    VK+  
Sbjct: 375  KAYGITSDREVVQIVCGNNDDYRAAFSICMEHCHEAGVFTQKQALAYI-GKSVKMVKKGP 433

Query: 304  FGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
               P       A  +L  V LA+VP  N N +PK  Y+AVM RR+V+AM N   +DD+DY
Sbjct: 434  VAGPKRPLTEEALEVLSTVVLAHVPADNLNLQPKAIYLAVMARRVVQAMANPKLVDDRDY 493

Query: 364  VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITV 421
            VGNKRLEL+GQL+SLLFEDLFK   ++++  +D +L KP+R++ FD ++QF +  D I+ 
Sbjct: 494  VGNKRLELAGQLLSLLFEDLFKKFNTDLKLNIDKVLKKPNRTTEFDAINQFRMHADHISN 553

Query: 422  GLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            G  R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQP
Sbjct: 554  GFIRAISTGNWSIKRFKMERAGITHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQP 613

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            SQWGMLCP DTPEGEACGLVKNLALMTH+TTD +E P+ ++ Y +G ED+  ++G EL+ 
Sbjct: 614  SQWGMLCPSDTPEGEACGLVKNLALMTHITTDTDEEPIWNVAYTIGCEDISSVTGTELYL 673

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601
            P  ++V  NG ILG  R P+ F +V R+ RRAGKI EFVS+++N  Q+ V IA+DGGR+C
Sbjct: 674  PRHYIVFINGNILGLTRSPERFVEVFRQFRRAGKISEFVSIYMNADQQTVNIATDGGRIC 733

Query: 602  RPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD 661
            RP++I   G S +K HH+++L  G  SFDDFL +GLIEYLD NEEN++ IALYE D    
Sbjct: 734  RPMIIVTNGDSMVKTHHIEKLKAGELSFDDFLSQGLIEYLDCNEENDSFIALYEEDIDSY 793

Query: 662  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721
            TTH+EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+V
Sbjct: 794  TTHLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIAYNQLHRIDTLLYLMV 853

Query: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
            YP  P++ T+TIELVGYDKL AGQNATVAVMSYSGYDIEDA+++NK+SLDRGFGRC V +
Sbjct: 854  YPHHPMVRTKTIELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFR 913

Query: 782  KYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV 841
            K TA+ ++Y N T DRI  P R   G    QV+          DD G+A  G  +   +V
Sbjct: 914  KATAMIKRYPNGTYDRIADPPRDPEG----QVLEKWK----PCDDGGVADVGMKVYNGNV 965

Query: 842  YINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            YINK+SP     + +     T + + +   TY+G       +D+V +   ++    +K L
Sbjct: 966  YINKQSPSNANDNSVGAGAATVTSWANTPMTYRG--TVPSYIDKVMVTDTESDQTLVKVL 1023

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TRRPELGDKFSSRHGQKGVCG IVQQED PF++RG CPD+IMNPHGFPSRMTVGKM+
Sbjct: 1024 LRQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFNDRGTCPDIIMNPHGFPSRMTVGKML 1083

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            ELL GKAGV  G   YG+AF    G +  VE +S+ L++HG+SY GKD + SGITG PL+
Sbjct: 1084 ELLSGKAGVLRGTVEYGTAF----GGSKAVE-MSKILIEHGYSYLGKDYLTSGITGQPLE 1138

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
             Y+FMGPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIA+G
Sbjct: 1139 HYVFMGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAHG 1198

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            AS L+ ERLM+SSD FE+ VC+ CG +GY       G C  CKNG++++ + +PYACKLL
Sbjct: 1199 ASQLLLERLMLSSDSFELDVCQDCGFMGY------NGWCVRCKNGNSVTKITIPYACKLL 1252

Query: 1142 IQELQSMNIVPRLKLAEA 1159
             QEL +MNI PRL L +A
Sbjct: 1253 FQELMAMNIAPRLVLEDA 1270


>gi|393219485|gb|EJD04972.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1148

 Score = 1308 bits (3385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1148 (56%), Positives = 831/1148 (72%), Gaps = 37/1148 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+K V DK+ LLP FLKV+GLVKQHLDSFNYFV+  I+ IV+AN+++ S +DP  +L
Sbjct: 28   LTDPIKRVEDKWLLLPAFLKVKGLVKQHLDSFNYFVDVDIKNIVKANNKVTSDVDPRFWL 87

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+++G P  T VD V   + PH CRL D TY+APILV I+Y +G    K  + + +V
Sbjct: 88   KYTDIQVGFPDRTDVDAVDRSVTPHECRLRDTTYSAPILVTIQYTRG----KQVVLRKNV 143

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G+ EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 144  NIGRLPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 203

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            + D  KG + AS TSST   +KSKT +  +K ++YL  N F + IPI++ +KA+ ++SD+
Sbjct: 204  EHDPVKGVVQASCTSSTHGGLKSKTYVATKKERLYLRHNCFHEDIPIVIALKALSIQSDK 263

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y +   P++EE A + ++T+ +ALEY+  +VK  R   G P       
Sbjct: 264  EILLLTAGNTEAYKSTFSPNLEEAAKIGVFTKHQALEYIGSRVKVNRRVIG-PRRPAWEE 322

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV+N +FRPK  ++A M RR++  + ++  +DD+DYVGNKRLEL+GQ
Sbjct: 323  AMEALATIVLAHVPVNNLDFRPKAIFIATMTRRVLMCLADEKMVDDRDYVGNKRLELAGQ 382

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGNF 432
            L++LLFEDLFKT  + ++  +D +L KPSR+S FD   +     D IT G  R +STGN+
Sbjct: 383  LLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFNTMQFQGDHITAGFVRAISTGNW 442

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 443  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 502

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD EE PLI L + LGVED+ L +G E++  NSF+V  NG 
Sbjct: 503  PEGEACGLVKNLALMTHITTDVEEEPLIRLVHALGVEDICLATGAEIYGQNSFVVHVNGA 562

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            I+G  R P  F    R+LRRAG+  EFVS+++N   + VYIASDGGR+CRP++I +    
Sbjct: 563  IIGITRYPSRFVQNFRRLRRAGRFSEFVSIYINHHHKAVYIASDGGRICRPMIIVENSRP 622

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            ++   H+ +L   + +FDDFLR GL+EYLDVNEEN++ IALYE    P TTH+EIEPFTI
Sbjct: 623  KVTSQHIIDLKKQLLTFDDFLRRGLVEYLDVNEENDSYIALYEDMIVPTTTHLEIEPFTI 682

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYPQ+P++ T++
Sbjct: 683  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKS 742

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IELVGYDKL AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY N
Sbjct: 743  IELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNATLIRKYPN 802

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DR+       P  E  +V    +    I+  DGLA  GE + P DVY+NK++P    
Sbjct: 803  GTYDRLA----DAPLDENGRVQKKYD----IIQSDGLAGVGERVDPGDVYVNKQTPSNAN 854

Query: 853  GSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
             +    TGQ     Y++   TYK P      +D+V L   +N    +K LIR TRRPELG
Sbjct: 855  DNTF--TGQAAGVAYKNTPMTYKSPVPGN--IDKVMLTDTENDQTLVKVLIRQTRRPELG 910

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IV QED PF++ GI PD IMNPHGFPSRMTVGKMIELL GKAGV 
Sbjct: 911  DKFSSRHGQKGVCGLIVNQEDMPFNDDGISPDSIMNPHGFPSRMTVGKMIELLAGKAGVL 970

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G+  YG+AFG        VE +S+ L++ GF+Y GKDM+ SGITG  ++AY++ GPIYY
Sbjct: 971  DGKLQYGTAFG-----GSKVEDMSKILIERGFNYAGKDMLTSGITGEQMEAYVYFGPIYY 1025

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERLM
Sbjct: 1026 QKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLM 1085

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSD FEV  C +CGL+GY       G C  CK+   ++ + +PYA KLL QEL +MN+V
Sbjct: 1086 LSSDKFEVHACEMCGLMGY------NGWCPYCKSSKGMAKLVIPYAAKLLFQELMAMNVV 1139

Query: 1152 PRLKLAEA 1159
            PRL L +A
Sbjct: 1140 PRLILDDA 1147


>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
 gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
          Length = 1169

 Score = 1307 bits (3383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1147 (55%), Positives = 833/1147 (72%), Gaps = 34/1147 (2%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKD 84
            + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI+ AN  ++S +DP  +L++KD
Sbjct: 42   ISTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVLSDVDPEFYLKYKD 101

Query: 85   VRIGQPSMTVDGVSE--KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
            +R+G+P +  D  ++   + PH CRL DMTYAAPI V+IEY +    E+  + + ++ IG
Sbjct: 102  IRVGKPGIKFDDKNDDNAIFPHECRLRDMTYAAPIYVDIEYTK----ERKIVIQRNLEIG 157

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            ++PIMLRS +C L  + E ++A +GECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I++ D
Sbjct: 158  KMPIMLRSSKCHLQDQTEEKMAAMGECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEAD 217

Query: 203  -KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             KKG + ASVTSST   +SKT +  +  K+YL  N  V+ IPI++++KA G+ +D E++Q
Sbjct: 218  EKKGVVQASVTSSTHERRSKTYVLTKNDKIYLKNNSIVEDIPIVLILKAAGLVTDLEIMQ 277

Query: 262  MV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
             V G++P Y  +   + EEC+ L ++TQ +ALEYL  KVK S   +            + 
Sbjct: 278  AVAGQNPVYQEIFAVNFEECSKLGVFTQRQALEYLGSKVKTSRRSNVKLTHYQEGLEAVA 337

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               +A++ ++N +F  K  Y+AVM RR++ AM +   +DD+DYVGNKRLEL+GQL+SLLF
Sbjct: 338  TSIIAHISINNMDFTEKALYIAVMTRRVIMAMADPKMIDDRDYVGNKRLELAGQLLSLLF 397

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFK 438
            EDLFK   S+ +  +D IL +P+R+S FD  L+    R SIT G+ R +STGN+ +KRFK
Sbjct: 398  EDLFKKFNSDFKANIDKILKRPNRASMFDALLNLETHRGSITSGMNRAISTGNWSLKRFK 457

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            M R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPEGEAC
Sbjct: 458  MERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEAC 517

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLALMTH+TTD+EE P+ +LCY LG E++ ++ G ELH   SF V  NG ++G  +
Sbjct: 518  GLVKNLALMTHITTDDEEAPVRNLCYLLGAENISVIGGAELHAEGSFGVYLNGTLIGITK 577

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
             P  F    R+ RR GK+ EF+S+++N     V+IA+DGGR+CRPL+I +    R++  H
Sbjct: 578  FPTKFVSSFRQFRRTGKVSEFISIYINRHHAAVHIATDGGRICRPLIIVENEHPRVQVEH 637

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            +K+L DG  +FDDFL++GL+EYLDVNEEN++ IALYE +   +TTH+EIEPFT+LG +AG
Sbjct: 638  LKKLRDGEMTFDDFLKQGLVEYLDVNEENDSFIALYENNINAETTHLEIEPFTVLGAVAG 697

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            LIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYPQ+P++ TRTIEL+ Y
Sbjct: 698  LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTRTIELIDY 757

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            DKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC V+KK T + ++YA   SD +
Sbjct: 758  DKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLKKNTTVLKRYAG--SDAV 815

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDD-------DGLAAPGEIIKPNDVYINKESPLET 851
             R D  G   ER +     N    ++ +       DGL   G+ +K + VY+N+  P+  
Sbjct: 816  DRLD--GVKMERRKCAWDPNSFEEVVTEQHEVLGPDGLGEVGKPVKNSQVYVNRCIPVNN 873

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
              S+++ +  + + YR A  TY+GP  E  ++D+V +         IK L+R TRRPELG
Sbjct: 874  SDSLLNQSTSSSTEYREAPVTYRGP--EPSIIDKVMVSVTDKELYLIKVLLRQTRRPELG 931

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IV QED PFS+ G+CPD+IMNPHGFPSRMTVGKMIEL+ GKAGV 
Sbjct: 932  DKFSSRHGQKGVCGIIVNQEDMPFSDSGVCPDIIMNPHGFPSRMTVGKMIELISGKAGVL 991

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G   YG+ FG        +E +S+ LV HG+SY+GKDM+YSG +G  LQAYIF GPIYY
Sbjct: 992  DGSLQYGTCFG-----GSKLEDMSKILVDHGYSYSGKDMLYSGTSGECLQAYIFFGPIYY 1046

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM
Sbjct: 1047 QKLKHMVMDKMHARPRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM 1106

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
             SSD FE  VC+ CGLLGY       G C++C+   ++  M LPYA KLL QEL SMNI 
Sbjct: 1107 YSSDAFEADVCQKCGLLGY------QGWCNSCQTTAHVVKMTLPYAAKLLFQELVSMNIA 1160

Query: 1152 PRLKLAE 1158
            PRLKL E
Sbjct: 1161 PRLKLKE 1167


>gi|432863563|ref|XP_004070128.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Oryzias
            latipes]
          Length = 1093

 Score = 1306 bits (3379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1155 (56%), Positives = 823/1155 (71%), Gaps = 67/1155 (5%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            M+V G    +  P  Q+LAAPV +V DK++LLP FLKV+GLVKQH+DSFNYF+N  I+KI
Sbjct: 1    MEVLGEEFGDMTP--QELAAPVNTVADKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKI 58

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIE 122
            ++AN++I S  DP  +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IE
Sbjct: 59   MKANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 118

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +GS      + +N + IGR+PIMLRS  CVL GK   E ++L ECPLDPGGYFI+KG 
Sbjct: 119  YTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQ 174

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKI 242
            EKV+LIQEQLSKNR+I+D D+KG + ASVTSST   KS+T I +++G+ YL  N   +  
Sbjct: 175  EKVILIQEQLSKNRIIVDQDRKGTVGASVTSSTHEKKSRTNIIVKQGRFYLRHNTLSEDA 234

Query: 243  PIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            PI ++ K MG+ESDQE+VQM+G +    A   PS+EEC    I+TQ +  E+        
Sbjct: 235  PIAIIFKGMGVESDQEIVQMIGTEEHVMANFAPSLEECQKAQIFTQTQVKEF-------- 286

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
                                          NFR KC Y+AVM+RR++ A   ++ +DD+D
Sbjct: 287  ------------------------------NFRAKCIYLAVMVRRVILAQ-GENKVDDRD 315

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVG 422
            Y GNKRLEL+GQL+SLLFEDLFK   SE++K  D I+ K  R+++FD+ + + +D IT G
Sbjct: 316  YYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPK-QRAAQFDVVKHMRQDQITNG 374

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            +   +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPS
Sbjct: 375  MVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPS 434

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
            QWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  P
Sbjct: 435  QWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLALNLGVEDVNLLCGEELSYP 494

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
            + FLV  NG ILG  R         R +RRAG I EFVS+  N   RCVYI+SDGGR+CR
Sbjct: 495  SVFLVFLNGNILGVIRNHHKLVSTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCR 554

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            P +I  KG   +K  H+++L  G R+F+DFL EGL+EYLDVNEEN+  IALYE     +T
Sbjct: 555  PYIIVKKGQPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNEENDCQIALYEHMINKET 614

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL Y
Sbjct: 615  THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAY 674

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQRP++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K 
Sbjct: 675  PQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKN 734

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
                 ++Y N T D+++ P      A R  +  H+     ILD DG+  PGE ++   + 
Sbjct: 735  TKCTLRRYTNQTFDKVMGP--MLDAATRKPLWRHN-----ILDADGICCPGEKVENKQIL 787

Query: 843  INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            +NK  P  T+  +         +Y+    +YKG       +++V + S+      IK L+
Sbjct: 788  VNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKG--STDSYIEKVMISSNAEDAFLIKILL 845

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPE+GDKFSSRHGQKGVCG IV QED PF + G+CPD+IMNPHG+PSRMTVGK+IE
Sbjct: 846  RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKLIE 905

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            LL GKAGV  GRFHYG+AFG        V+ + E L+++G++Y GKD + SGITG PL+A
Sbjct: 906  LLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEA 960

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            YI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGA
Sbjct: 961  YIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGA 1020

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            SML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+K+PYACKLL 
Sbjct: 1021 SMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLKIPYACKLLF 1074

Query: 1143 QELQSMNIVPRLKLA 1157
            QELQSMNI+PRLKL+
Sbjct: 1075 QELQSMNIIPRLKLS 1089


>gi|301110510|ref|XP_002904335.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
 gi|262096461|gb|EEY54513.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
          Length = 1166

 Score = 1306 bits (3379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/1160 (56%), Positives = 836/1160 (72%), Gaps = 33/1160 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDP 76
            ++L  PV SV DK++LLP FL++RGLVKQH+DSF+YF +  +R IVRA  N+ + S  DP
Sbjct: 19   EELEKPVSSVKDKWKLLPYFLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADP 78

Query: 77   SIFLRFKDVRIGQPSMTVDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              FL++ D+++G PS+  +  VS  + PH CRL D TYAAP+ V++ Y +G+      + 
Sbjct: 79   KFFLQYTDIQLGAPSIDEEAFVSASVTPHQCRLRDRTYAAPVYVSVRYRRGNKI----VT 134

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
             N V+IGRIPIMLRS RCVL GK EA LA+L ECP DPGGYFI++G EKV+LI EQLSKN
Sbjct: 135  NNKVLIGRIPIMLRSSRCVLAGKSEAALAKLKECPYDPGGYFIVRGVEKVVLIHEQLSKN 194

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            RVII+ D K N+ AS+TSST   KS+T I + KG++YL  N F   IPI++V + MG+ES
Sbjct: 195  RVIIEEDGKHNVCASITSSTHERKSRTNIFLNKGRVYLKSNSFGSDIPIVIVFRGMGVES 254

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST------------ 303
            DQE+V +VG +      L  S EE ++L ++TQ++ALEY+  K+   T            
Sbjct: 255  DQEIVSLVGSESDICDALSASFEEASDLKVFTQQQALEYIGSKMNALTKIGAMGGRHRGG 314

Query: 304  FGSPPNDRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
             G P NDR     A S L ++ L +VP  N NFR K  YVA ++RR++    ++  +DDK
Sbjct: 315  AGRPQNDRNLVDAARSALANLVLNHVPCDNFNFRLKSIYVAHIVRRILFTDKDRTRLDDK 374

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITV 421
            DY GNKRLEL+GQL+SLLFEDLFK   S++++  D++LSKP+R+S FD+ + +  D+IT 
Sbjct: 375  DYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDILKCVRTDTITQ 434

Query: 422  GLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            G    LSTGN+ +KRF+M R G+T VL+RLS++  LG MTR+S QFEK+RKVSGPR+LQP
Sbjct: 435  GFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQP 494

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            SQWGMLCP DTPEGEACGLVKNLAL+ HVT+DEE  P+  LC+ LGV D+ L SGEE+++
Sbjct: 495  SQWGMLCPADTPEGEACGLVKNLALLCHVTSDEEPAPIKRLCFDLGVTDVSLSSGEEINH 554

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601
             +++LV+ NG+I+G H  P+ F   +R++RRAG IGEFVSV +++ QR VYIASDGGRVC
Sbjct: 555  ASNYLVMLNGVIIGTHVNPRAFVTRLRRIRRAGLIGEFVSVMIHDVQRVVYIASDGGRVC 614

Query: 602  RPLVIADKGI--SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            RPL++ D     +R+ + H+ EL  GVR     + EG +EY+DVNEENN L+AL+E +  
Sbjct: 615  RPLLLIDPVTHRTRLTQRHLDELRAGVRDLSSLIVEGCVEYVDVNEENNCLVALHESEIG 674

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
              TTH+EI+P TILGV++GLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+D+LLY 
Sbjct: 675  DRTTHLEIDPVTILGVVSGLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYT 734

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            +VYPQ P++ TR ++LV +D++ AGQNA VAVMSYSGYDIEDAIV+NK+SLDRGFGRC+V
Sbjct: 735  MVYPQMPMVKTRVLDLVNFDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMV 794

Query: 780  VKKYTAINQKYANSTSDRIL-RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
             KKY  + +KYAN + DRI+  PD     A     +   N     LD DG++  G I++ 
Sbjct: 795  FKKYQTMIKKYANGSYDRIVGPPDFDSLAAAGGAGMGFRNAKFSSLDADGISRVGGIVQN 854

Query: 839  NDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
              + INKE P +   S+       D  Y  +  TYKGP      VD+V L S +     +
Sbjct: 855  GAIMINKEQPTQFNDSV-DGRDPLDVTYSPSPTTYKGP--IPAYVDKVLLTSSEANHFLV 911

Query: 899  KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
            K LIR TRRPE+GDKFSSRHGQKGVCGTI  QED PF+++GICPDLIMNPHGFPSRMTVG
Sbjct: 912  KVLIRQTRRPEIGDKFSSRHGQKGVCGTIRNQEDMPFNDQGICPDLIMNPHGFPSRMTVG 971

Query: 959  KMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGC 1018
            KMIEL+ GKAGV  GR  YG+AFGE  G AD V   S  LVK+GF+Y GKD + SGITG 
Sbjct: 972  KMIELIAGKAGVLTGRRAYGTAFGEKYGSADHVLDCSRELVKNGFNYAGKDYLTSGITGE 1031

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
             ++ YIFMGPIYYQKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI
Sbjct: 1032 AIECYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI 1091

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYAC 1138
             YGASML+ ERLM+SSD F   VC+ C +LGY       G C  CK+ + + S+++PYAC
Sbjct: 1092 GYGASMLLMERLMLSSDAFSADVCQGCRMLGY------EGWCQHCKSEEKVVSIRIPYAC 1145

Query: 1139 KLLIQELQSMNIVPRLKLAE 1158
            KLL QELQ+MNIVPRL L E
Sbjct: 1146 KLLFQELQAMNIVPRLTLKE 1165


>gi|328853924|gb|EGG03059.1| hypothetical protein MELLADRAFT_49581 [Melampsora larici-populina
            98AG31]
          Length = 1135

 Score = 1305 bits (3376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1152 (56%), Positives = 839/1152 (72%), Gaps = 38/1152 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL+ PVK+V DK+QLLP FLKV+GLVKQH+DSFNYFV+  ++ I+RAN  +VS +DP+ 
Sbjct: 9    KKLSDPVKTVEDKWQLLPAFLKVKGLVKQHIDSFNYFVDVELKAILRANATVVSDVDPNF 68

Query: 79   FLRFKDVRIGQPSM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
             L + D+ +G+P    T    ++++ PH CRL D+TY+API V I+Y +G+   K  + K
Sbjct: 69   HLTYLDINVGEPCRLDTGSATNKRITPHECRLRDITYSAPISVTIQYTKGN---KRVLSK 125

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
              + IGR+PIMLRS +CVL  K +AELA++ ECPLDPGGYF++KGTEKV+L+QEQLSKNR
Sbjct: 126  G-IPIGRMPIMLRSNKCVLTNKSDAELAKMTECPLDPGGYFVVKGTEKVILVQEQLSKNR 184

Query: 197  VIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            ++I+TD +KG I ASVTSST   KSKT +  +  K+YL  N   ++IP+++ +KA G+ S
Sbjct: 185  ILIETDSRKGTIMASVTSSTHERKSKTYVVTKNSKVYLKHNSIQEEIPVVIALKAYGITS 244

Query: 256  DQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFG-----SPPN 309
            D EVVQ+V G +  Y +     IE+C    IYTQ++ALEY+   VK    G       P 
Sbjct: 245  DNEVVQLVCGNNDDYRSTFSICIEQCHEAGIYTQKQALEYIGKSVKVMKKGPMVTVKRPL 304

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
              E  A  +L  V LA+VP  N N +PK  Y+AVM RR+++AM N   +DD+DYVGNKRL
Sbjct: 305  SEE--ALEVLSTVVLAHVPAENMNLQPKALYLAVMARRVIQAMANPKLVDDRDYVGNKRL 362

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTL 427
            EL+GQL+SLLFEDLFK   ++++  +D IL KP+R++ FD ++QF +  D I+ G  R +
Sbjct: 363  ELAGQLLSLLFEDLFKKFNTDLKMNIDKILKKPNRTTEFDAINQFRMHGDHISHGFIRAI 422

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGML
Sbjct: 423  STGNWSIKRFKMERAGITHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGML 482

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP DTPEGEACGLVKNLALMTH+TTD +E P+ ++ Y +G ED+  ++G EL+ P  ++V
Sbjct: 483  CPSDTPEGEACGLVKNLALMTHITTDVDEEPIWNVAYTIGCEDISSVTGTELYLPRHYIV 542

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG ILG  R P+ F  V R+ RRAG++ EFVS+++N  Q+ V IA+DGGR+CRP++I 
Sbjct: 543  FINGNILGLSRSPERFVKVFRQFRRAGQVSEFVSIYMNSDQQTVNIATDGGRICRPMIIV 602

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            D G+ R+   H++ L +    FDDFL  GLIEYLD NEEN++ IALYE D    TTH+EI
Sbjct: 603  DHGVPRVTSSHIQLLKENKMCFDDFLTAGLIEYLDCNEENDSFIALYEEDVDQFTTHLEI 662

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYP  P+
Sbjct: 663  EPFTLLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLHRIDTLLYLMVYPHHPM 722

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            + T+TIELVGYDKL AGQNATVAVMSYSGYDIEDA+++NK+SLDRGFGRC V +K TA+ 
Sbjct: 723  VRTKTIELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMI 782

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            ++Y N T DRI  P R   G    Q++          D+ G+A  G  +   +VY+NK++
Sbjct: 783  KRYPNGTYDRIADPPRDTDG----QILEKWK----PCDEGGVADVGMKVFSGNVYVNKQT 834

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P     + ++    T + + +   TY+G       +D+V +   ++    +K L+R TRR
Sbjct: 835  PSNANDNSVAGGAATVTAWNNTPMTYRGTI--PSYIDKVLVTDTESDQTLVKVLLRQTRR 892

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PELGDKFSSRHGQKGVCG IVQQED PF++ G CPD+IMNPHGFPSRMTVGKM+ELL GK
Sbjct: 893  PELGDKFSSRHGQKGVCGLIVQQEDMPFNDHGSCPDIIMNPHGFPSRMTVGKMLELLSGK 952

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
            AGV  G   YG+AF    G +  VE +S+ L++HG+SY GKD + SGITG  L+ Y+FMG
Sbjct: 953  AGVLRGTVEYGTAF----GGSKAVE-MSKILIEHGYSYLGKDYLTSGITGQALEHYVFMG 1007

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            PIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIA+GAS L+ 
Sbjct: 1008 PIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAHGASQLLL 1067

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERLM+SSD FE+ VC+ CG +GY      +G C  CKNG +++ + +PYACKLL QEL +
Sbjct: 1068 ERLMISSDAFELDVCQDCGFMGY------SGWCVRCKNGKSVTKITIPYACKLLFQELMA 1121

Query: 1148 MNIVPRLKLAEA 1159
            MNI PRL L  A
Sbjct: 1122 MNIAPRLVLENA 1133


>gi|320165828|gb|EFW42727.1| polymerase III polypeptide B [Capsaspora owczarzaki ATCC 30864]
          Length = 1138

 Score = 1303 bits (3372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1146 (55%), Positives = 823/1146 (71%), Gaps = 33/1146 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            +  +L  PV  + DK+QL+P FLKV+GLVKQH+DSFNYF+N  IRKIV+ANDRI S  DP
Sbjct: 17   EHAQLTRPVSELKDKWQLVPAFLKVKGLVKQHIDSFNYFLNVEIRKIVQANDRITSDADP 76

Query: 77   SIFLRFKDVRIGQPSMT---VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            + +LR+ ++++G P+         S  + P  CRL DMTYAAPI VN+EY++GS      
Sbjct: 77   TFYLRYTNIQVGAPTAEEYYSYATSPPIAPQQCRLRDMTYAAPITVNVEYMRGSQK---- 132

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            + ++++ IGR+PIMLRS  C+L+GK  AEL +LGECP DPGGYFIIKG EKV+LIQEQLS
Sbjct: 133  IVRDNLFIGRMPIMLRSSNCILHGKSRAELTKLGECPNDPGGYFIIKGVEKVILIQEQLS 192

Query: 194  KNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
            KNR+II+ D+KG   ASVTSST+  KS+T +  + G+ YL  N   + I ++++ KA+G+
Sbjct: 193  KNRMIIENDRKGIPGASVTSSTQERKSRTNVVCKAGRFYLKHNTLSEDINVVILFKALGV 252

Query: 254  ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDR 311
            E+DQE++QM+G +  Y   +  +  E     I TQ +AL+++  +V+  +  +G     +
Sbjct: 253  ETDQEIMQMIGFEDMYQQAIAATFAESIEHGITTQNQALDFVGSRVRLAKRAWGGARKSK 312

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  +L  + LA+VPVH  NFRPK  Y+A+M+RR++ A+     +DDKDY GNKRLEL
Sbjct: 313  VDEARELLASIILAHVPVHKYNFRPKSLYLALMVRRVILALNEALPVDDKDYYGNKRLEL 372

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +GQL++LLFED+FK   +E++K  D+ + K  R++++D+ +      I+ GL   +STGN
Sbjct: 373  AGQLLALLFEDVFKKFNTELKKVTDLTIPK-QRATQYDVVKKFRPQIISDGLTHAISTGN 431

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + VKRFKM R G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP D
Sbjct: 432  WTVKRFKMDRGGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSD 491

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD+EE  +  L +  GVED+ +LS E+L    S+LV  NG
Sbjct: 492  TPEGEACGLVKNLALMTHITTDDEESNIARLAFNFGVEDINVLSAEDLTRDESYLVFLNG 551

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
            L+LG    P       R LRR G++  F+S+  N++QRCVYIASDGGRVCRP +I DK  
Sbjct: 552  LLLGVTIHPTILVRAFRMLRRDGRLSHFLSICPNDRQRCVYIASDGGRVCRPYIIVDKNG 611

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             ++   H++ L   V  FDDFL+ GLIEYLDVNEEN A IA+YE +  P TTH+EIEPFT
Sbjct: 612  PKVTNTHLERLAQKVLRFDDFLKLGLIEYLDVNEENGANIAMYESEIKPYTTHLEIEPFT 671

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILGV AG+IPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R D+LLY L+YPQRP++ TR
Sbjct: 672  ILGVCAGIIPYPHHNQSPRNTYQCAMGKQAIGTIAANQYVRFDTLLYTLLYPQRPMVQTR 731

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+ +  + AGQNA VAVMSYSGYDIEDA+++N++SLDRGFGRC+V +K T   + Y 
Sbjct: 732  TIELIDFHNMPAGQNACVAVMSYSGYDIEDALILNQASLDRGFGRCMVYRKQTVSIKTYP 791

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N   DRI+ P R    + R+           +LD +G+  PGE ++     + KE+P+ T
Sbjct: 792  NMLVDRIVAPTRNRDDSSRLAKFD-------VLDQEGICRPGERVENGSTLVLKETPVNT 844

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGP-DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
               I  P      +Y+ A  +YKGP +G   VVD+V L ++   +  IK L+R TRRPE+
Sbjct: 845  SNPIQDPHNAA-VQYKPAYVSYKGPCEG---VVDKVLLTNNSEDNHLIKILLRTTRRPEV 900

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IV+QED PFS+ GICPD+IMNPHGFPSRMTVGK++E L GKAG 
Sbjct: 901  GDKFSSRHGQKGVCGLIVRQEDMPFSDIGICPDIIMNPHGFPSRMTVGKLMEFLSGKAGA 960

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+FHYG+AFG      D V  +S+ LV+HGF+Y GKD + SGITG PL AYIF GP+Y
Sbjct: 961  LIGKFHYGTAFG-----GDKVVDMSKILVEHGFNYAGKDFVTSGITGEPLSAYIFFGPVY 1015

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERL
Sbjct: 1016 YQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERL 1075

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            M+SSD F+V VCR CGLLGY         C  CK   ++S + +PYA KLL QELQSMNI
Sbjct: 1076 MISSDKFDVHVCRACGLLGY------ESWCQYCKASSSMSILSIPYASKLLFQELQSMNI 1129

Query: 1151 VPRLKL 1156
            VPRL+L
Sbjct: 1130 VPRLRL 1135


>gi|389743088|gb|EIM84273.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1141

 Score = 1302 bits (3369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1149 (56%), Positives = 835/1149 (72%), Gaps = 40/1149 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KS+ DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I++AN+++ S +DP  +L
Sbjct: 23   LTDPIKSIEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWL 82

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+R+G P  T  D + + + P+ CRL D TY+API+V I+Y +G    K  + + +V
Sbjct: 83   KYTDIRVGFPDRTDADAIDKSVTPNECRLRDTTYSAPIVVTIQYTRG----KNVVRRPNV 138

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G+ EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 139  NIGRLPIMLRSNKCVLTGRSEAQLARMIECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 198

Query: 200  DTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            +TD  KG + AS TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G++SD+
Sbjct: 199  ETDPVKGVVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDK 258

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y     P++E+ A L I+T+ +ALE++  +VK  R   G      E  
Sbjct: 259  EILLLTAGNSEAYKDSFAPNLEDAARLGIFTRHQALEWIGSRVKINRRIVGVRRPAWE-E 317

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV   +FR K  +VA M RR++ A+ ++  +DD+DYVGNKRLEL+GQ
Sbjct: 318  ALEALATIVLAHVPVVGMDFRSKAIFVATMTRRVLMAVKDEKMVDDRDYVGNKRLELAGQ 377

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD---LSQFIVRDSITVGLERTLSTGN 431
            L++LLFEDLFKT  + ++ ++D +L KPSR++ FD     QF   D IT G  R +STGN
Sbjct: 378  LLALLFEDLFKTFNTNLKSSIDKVLKKPSRTTEFDAFNTMQF-QGDHITSGFVRAISTGN 436

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRF+M R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP D
Sbjct: 437  WSLKRFRMDRAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 496

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD +E P+I + Y LGVE++   +G E++ PN+F+V  NG
Sbjct: 497  TPEGEACGLVKNLALMTHITTDVDEEPIIKVAYMLGVENIGQSTGTEIYGPNTFVVNVNG 556

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F    R+LRRAG++ EFVSV++N     V IASDGGR+CRP++I D G 
Sbjct: 557  TIIGLTRFPTRFVHNFRRLRRAGRVSEFVSVYINHHHHTVNIASDGGRICRPMIIVDNGR 616

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +   H+  L      FDDFLR+GL+EYLDVNEEN++ IALYE D  P TTH+EIEPFT
Sbjct: 617  PMVTSEHVSLLKKAKLEFDDFLRQGLVEYLDVNEENDSYIALYEPDIVPTTTHLEIEPFT 676

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL VYPQ+P++ T+
Sbjct: 677  LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTK 736

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIELVGYDKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC V++K   + +KY 
Sbjct: 737  TIELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASVDRGYGRCQVLRKNATLIRKYP 796

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DR+       P  E   V    +++ L    DGLA  GE + P DVY+NK++P  T
Sbjct: 797  NGTFDRLA----DAPTDEEGNVQKKYDIVQL----DGLAGVGERVDPGDVYVNKQTP--T 846

Query: 852  RGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
              +  + TGQ  S  Y++A  TYK P      VD++ +   +N    IK LIR TRRPEL
Sbjct: 847  NANDNTFTGQAASVPYKNAPMTYKSPVAGH--VDKIMISDTENDQTLIKVLIRQTRRPEL 904

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKAGV
Sbjct: 905  GDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKAGV 964

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+  YG+AFG        VE +S  L+++GFSY GKDM+ SGITG P++AY++ GPIY
Sbjct: 965  LAGKLQYGTAFG-----GSKVEDMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGPIY 1019

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ +KHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ ERL
Sbjct: 1020 YQ-VKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERL 1078

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            M+SSD FEV  C+ CGLLGY       G C+ CK+   ++ + +PYA KLL QEL +MN+
Sbjct: 1079 MISSDKFEVNACQECGLLGY------NGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNV 1132

Query: 1151 VPRLKLAEA 1159
            VPRL L +A
Sbjct: 1133 VPRLVLDDA 1141


>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score = 1301 bits (3368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1155 (56%), Positives = 831/1155 (71%), Gaps = 42/1155 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL  P+ +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN+ ++S +DP  
Sbjct: 29   RKLTDPINTTEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    K  M K 
Sbjct: 89   YLKYLDIRVGHKSSSPPGTKEVNLAPHECRLRDLTYSAPIYVDVEYTRG---RKIIMHK- 144

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIMLRS +C+L G DE ++A+  ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 145  DLEIGRMPIMLRSNKCILDGIDEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRI 204

Query: 198  IIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D+K NI  ASVTSST   KSKT +  +  K+YL  N   + +PI++V+KA G+ SD
Sbjct: 205  IVEADEKKNIVQASVTSSTHERKSKTYVITKNDKIYLKHNSIAEDVPIVIVLKAAGITSD 264

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G+DP Y  L   + EE A L++ TQ++AL Y+  +VK     G+P   +   
Sbjct: 265  LEILQLVCGQDPNYQDLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRAGAPKLSQLQE 324

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+A M RR++  M N   +DD+DYVGNKRLEL+GQ
Sbjct: 325  GIEAVATTIIAHITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRDYVGNKRLELAGQ 384

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D +L KPSR+S FD  LS  I  ++IT+G+ R +STGN+
Sbjct: 385  LLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGMNRAISTGNW 444

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 445  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDT 504

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+ +LC+ LG E++  +    LH   +F V  NG 
Sbjct: 505  PEGEACGLVKNLALMTHITTDDEELPVKNLCFTLGCENILEIDSATLHAVTNFGVYLNGT 564

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-KGI 611
            ++G  R P  F D  RKLRR+GKI  FVS++ N   R V+IA+DGGR+CRPL+I D +  
Sbjct: 565  LIGATRFPVSFVDRFRKLRRSGKISAFVSIYTNSHHRAVHIATDGGRICRPLIIVDAENK 624

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---ATPDTTHIEIE 668
            SR+K HH+K+LL    +FDDFL+ GL+EYLDVNEEN++LIALYE D      + TH+EIE
Sbjct: 625  SRVKAHHLKKLLSNEWAFDDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIE 684

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL+VYPQ+P++
Sbjct: 685  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMV 744

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V++K T   +
Sbjct: 745  KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLK 804

Query: 789  KYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            +Y N T D +  +R D  G       +  HS+     L  DGL   G  ++   VY+NK 
Sbjct: 805  RYPNHTKDIVAGMRVDENGD-----PIFSHSS-----LGTDGLGEVGMQVENGQVYVNKC 854

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQT---YKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             P     S++    Q      S R+T   YKGP  E   VD+V +    N    IK L+R
Sbjct: 855  VPTNAGESVLGSPDQHVQSAESHRETPAYYKGP--EPSYVDQVMMSVGDNDQALIKVLLR 912

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKM+EL
Sbjct: 913  QTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLEL 972

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G   YG+ FG        +E +S+ LV HGF+Y+GKDM+YSGITG  +QAY
Sbjct: 973  ISGKAGVLNGSLEYGTCFG-----GSKLEDMSKILVDHGFNYSGKDMLYSGITGECMQAY 1027

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS
Sbjct: 1028 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1087

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD FEV VC  CGL+GY       G C++CK+ D++  M +PYA KLL Q
Sbjct: 1088 QLLLERLMLSSDAFEVDVCSKCGLMGY------NGWCTSCKSTDSVIKMTIPYAAKLLFQ 1141

Query: 1144 ELQSMNIVPRLKLAE 1158
            EL SMNI PRLKL +
Sbjct: 1142 ELLSMNIAPRLKLGD 1156


>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
          Length = 1152

 Score = 1300 bits (3364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1144 (56%), Positives = 829/1144 (72%), Gaps = 38/1144 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L+  + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN++++S +DP  
Sbjct: 41   KQLSDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEKVLSDVDPDF 100

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            ++++ D+R+G+ S      +  L PH CRL DMTY+API V++EY +G    K  M K  
Sbjct: 101  YIKYLDIRVGEASPAAR--NNMLPPHECRLRDMTYSAPIYVDVEYTRG---RKIIMHKG- 154

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            + IG++PIMLRS +C+L G  EA++A L ECPLDPGGYFI+ GTEKV+LIQEQLSKNR+I
Sbjct: 155  LEIGKMPIMLRSNKCILDGASEAKMASLNECPLDPGGYFIVNGTEKVILIQEQLSKNRII 214

Query: 199  IDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D+K  I  ASVTSST   KSKT +  +  K+YL  N   +++PI++V+KA G+ SD 
Sbjct: 215  VEADEKKQIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSISEEVPIVIVLKAAGIISDL 274

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            E++Q+V G D  Y      + EECA + IYTQ++ALE++  KVK          +EG   
Sbjct: 275  EIMQLVCGDDAAYQDSFAINFEECAKVGIYTQQQALEFIGAKVKTMRRAKLSILQEG--I 332

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V++ +FR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+GQL+
Sbjct: 333  EAIATTVIAHLTVNDLDFREKALYIALMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQLM 392

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   ++ +  +D IL KP+R++ FD  L+  I  ++IT GL R +STGN+ +
Sbjct: 393  SLLFEDLFKKFNTDFKANIDKILRKPNRATEFDALLNINIHSNNITTGLNRAISTGNWSL 452

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 453  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPE 512

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD+EE P+  LCY +GVE++ ++    LH+  +F V  NG I+
Sbjct: 513  GEACGLVKNLALMTHITTDDEEEPIKKLCYLIGVEEISVIDSASLHD--NFGVYLNGTII 570

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R P  F  + R LRR GK+ EF+S+++N  Q+ V+IA+DGGR+CRPL+I + G S++
Sbjct: 571  GTTRFPTKFVSLFRNLRRTGKVSEFISIYINSHQKAVHIATDGGRICRPLIIIENGESKV 630

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
            K HH+ +L  G   FDDFL++GL+EYLDVNEEN+  IALYE D T   TH+EIEPFT+LG
Sbjct: 631  KAHHLLKLKQGKLQFDDFLKQGLVEYLDVNEENDCYIALYERDITEKATHLEIEPFTVLG 690

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++ ++TIE
Sbjct: 691  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYLMVYPQQPMVKSKTIE 750

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC V++K T + ++Y N T
Sbjct: 751  LIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRKNTTVLKRYPNHT 810

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             D I        G    Q  H S      L  DGLA  G  ++   VYINK  P     S
Sbjct: 811  KDIIAGMRVKDNGEPTFQ--HAS------LGPDGLAEVGTRVESGQVYINKSIPTNAADS 862

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
            IM+   Q    YR     YK P  E   +D+V + +  N    IK L+R TRRPELGDKF
Sbjct: 863  IMN---QDTGEYRETPVVYKAP--EPSYIDQVMMTTSDNDQELIKVLLRQTRRPELGDKF 917

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKM+EL+ GKAGV  G 
Sbjct: 918  SSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKAGVLNGS 977

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
              YG+ FG        +E +S+ L+  GF+Y+GKDM+YSGITG  LQAYIF GPIYYQKL
Sbjct: 978  LEYGTCFG-----GSDLEDMSKILMDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKL 1032

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+SS
Sbjct: 1033 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISS 1092

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F+V +C  CGL+GY       G C++CKN +N+  M++PYA KLL QEL SMNI PRL
Sbjct: 1093 DAFDVDICNKCGLMGY------NGWCTSCKNAENVIRMQIPYAAKLLFQELLSMNIAPRL 1146

Query: 1155 KLAE 1158
            KL +
Sbjct: 1147 KLGD 1150


>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score = 1300 bits (3363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1155 (56%), Positives = 831/1155 (71%), Gaps = 42/1155 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL  P+ +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN+ ++S +DP  
Sbjct: 29   RKLTDPINTTEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    K  M K 
Sbjct: 89   YLKYLDIRVGHKSSSPPGTKEVNLAPHECRLRDLTYSAPIYVDVEYTRG---RKIIMHK- 144

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIMLRS +C+L G DE ++A+  ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 145  DLEIGRMPIMLRSNKCILDGIDEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRI 204

Query: 198  IIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D+K NI  ASVTSST   KSKT +  +  K+YL  N   + +PI++V+KA G+ SD
Sbjct: 205  IVEADEKKNIVQASVTSSTHERKSKTYVITKNDKIYLKHNSIAEDVPIVIVLKAAGITSD 264

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G+DP Y  L   + EE A L++ TQ++AL Y+  +VK     G+P   +   
Sbjct: 265  LEILQLVCGQDPNYQDLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRAGAPKLSQLQE 324

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+A M RR++  M N   +DD+DYVGNKRLEL+GQ
Sbjct: 325  GIEAVATTIIAHITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRDYVGNKRLELAGQ 384

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D +L KPSR+S FD  LS  I  ++IT+G+ R +STGN+
Sbjct: 385  LLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGMNRAISTGNW 444

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 445  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDT 504

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+ +LC+ LG E++  +    LH   +F +  NG 
Sbjct: 505  PEGEACGLVKNLALMTHITTDDEELPVKNLCFTLGCENILEIDSATLHAVTNFGIYLNGT 564

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-KGI 611
            ++G  R P  F D  RKLRR+GKI  FVS++ N   R V+IA+DGGR+CRPL+I D +  
Sbjct: 565  LIGATRFPVSFVDRFRKLRRSGKISAFVSIYTNSHHRAVHIATDGGRICRPLIIVDAENK 624

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---ATPDTTHIEIE 668
            SR+K HH+K+LL    +FDDFL+ GL+EYLDVNEEN++LIALYE D      + TH+EIE
Sbjct: 625  SRVKAHHLKKLLSNEWAFDDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIE 684

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL+VYPQ+P++
Sbjct: 685  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMV 744

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V++K T   +
Sbjct: 745  KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLK 804

Query: 789  KYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            +Y N T D +  +R D  G       +  HS+     L  DGL   G  ++   VY+NK 
Sbjct: 805  RYPNHTKDIVAGMRVDENGE-----PIFSHSS-----LGTDGLGEVGMQVENGQVYVNKC 854

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQT---YKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             P     S++    Q      S R+T   YKGP  E   +D+V +    N    IK L+R
Sbjct: 855  VPTNAGESVLGSPDQHVQSAESHRETPAYYKGP--EPSYIDQVMMSVGDNDQALIKVLLR 912

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKM+EL
Sbjct: 913  QTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGITPDIIMNPHGFPSRMTVGKMLEL 972

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G   YG+ FG        +E +S+ LV HGF+Y+GKDM+YSGITG  +QAY
Sbjct: 973  ISGKAGVLNGSLEYGTCFG-----GSKLEDMSKILVDHGFNYSGKDMLYSGITGECMQAY 1027

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS
Sbjct: 1028 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1087

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD FEV VC  CGL+GY       G C++CK+ D++  M +PYA KLL Q
Sbjct: 1088 QLLLERLMLSSDAFEVDVCSKCGLMGY------NGWCTSCKSTDSVIKMTIPYAAKLLFQ 1141

Query: 1144 ELQSMNIVPRLKLAE 1158
            EL SMNI PRLKL +
Sbjct: 1142 ELLSMNIAPRLKLGD 1156


>gi|344266576|ref|XP_003405356.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC2-like [Loxodonta africana]
          Length = 1133

 Score = 1298 bits (3360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1143 (56%), Positives = 823/1143 (72%), Gaps = 29/1143 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K+ +L  +LK    +K  +    +F    I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWDILGHYLKGNDXLKACIFPNVFFPPLQIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRLWGGGPKKTKMEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKEKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 608  AKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 728  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 788  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 841  EGSNIPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 898

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+F
Sbjct: 899  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGKF 958

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 959  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1013

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLK
Sbjct: 1074 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127

Query: 1156 LAE 1158
            L++
Sbjct: 1128 LSK 1130


>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
 gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
          Length = 1142

 Score = 1298 bits (3359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1147 (56%), Positives = 827/1147 (72%), Gaps = 44/1147 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  +RKI++AN  I+S +DP  
Sbjct: 29   KKLTDEISTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLRKIIKANQLILSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+GQ S   +G  + L P H CRL DMTY+API V+IEY +G    +  +   
Sbjct: 89   YLKYVDIRVGQRS---NGSKDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHK 141

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            DV IGR+P+MLRS +C+L+  DEA +A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 142  DVEIGRMPVMLRSNKCILHESDEAMMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 201

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KK  + ASVTSST   KSKT +  +  K+YL  N   + IPI+VV+KA G+ SD
Sbjct: 202  IVEADEKKAIVQASVTSSTHERKSKTYVVTKNEKIYLKHNSIAEDIPIVVVLKACGIVSD 261

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
             EV+Q+V G D  Y  +   ++EE A L++YTQ++ALEY+  KVK          +EG  
Sbjct: 262  LEVMQLVCGNDSSYQDIFAINLEEAAKLNLYTQQQALEYIGSKVKTVRRQKLSVLQEG-- 319

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               +    +A++ V   +FR K  Y+A+M RR+V A+ N   +DD+DYVGNKRLEL+GQL
Sbjct: 320  IEAIATTVIAHLTVEALDFREKALYIAIMTRRVVMAIYNPKMVDDRDYVGNKRLELAGQL 379

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
            +SLLFEDLFK   S+ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ 
Sbjct: 380  ISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWS 439

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTP
Sbjct: 440  LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTP 499

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ LL    LH   ++ V  NG +
Sbjct: 500  EGEACGLVKNLALMTHITTDDEEEPIKKLCYLLGVEDISLLDSASLHL--NYGVHLNGTL 557

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G  + P  F    R LRR+ K+  F+S++ N  Q+ V+IA+DGGR+CRPL+I   G SR
Sbjct: 558  IGTTKYPTKFITHFRNLRRSSKVSAFISIYANSHQKAVHIATDGGRICRPLIIVSDGQSR 617

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +K  H+K+LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D   + TH+EIEPFT+L
Sbjct: 618  VKADHLKKLLDGELVFDDFLKLGLVEYLDVNEENDSFIALYEKDIDQNITHMEIEPFTVL 677

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TI
Sbjct: 678  GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 737

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   +K T + ++Y N 
Sbjct: 738  ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKNTTVLKRYPNH 797

Query: 794  TSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            T D I  +R D  G       +  H       L  DGL   G  +    +YINK  P  +
Sbjct: 798  TQDIIGGMRVDENGE-----PIWQHK-----CLGPDGLGEVGMKLDSGQIYINKSIPTNS 847

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
               +++    T S+Y+     Y+ P  E   +D+V +    N    IK L+R  RRPELG
Sbjct: 848  GDGVLT---NTQSQYKETPVIYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELG 902

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IV+QED PF+++GICPD+IMNPHGFPSRMTVGKMIEL+ GKAGV 
Sbjct: 903  DKFSSRHGQKGVCGIIVKQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELISGKAGVL 962

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G   YG+ FG        +E +++ LV +GF+Y+GKDM+YSGITG  LQAYIF GPIYY
Sbjct: 963  NGTLEYGTCFG-----GSKLEDMTKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYY 1017

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM
Sbjct: 1018 QKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM 1077

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSD FEV VC  CGL+GY      +G C+TC++ +NI+ M +PYA KLL QEL SMNI 
Sbjct: 1078 ISSDAFEVDVCNKCGLMGY------SGWCTTCRSAENINKMTIPYAAKLLFQELLSMNIA 1131

Query: 1152 PRLKLAE 1158
            PRL+L +
Sbjct: 1132 PRLRLED 1138


>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
 gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
          Length = 1169

 Score = 1298 bits (3358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1159 (55%), Positives = 834/1159 (71%), Gaps = 49/1159 (4%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+K+V DK++L+P FL+V+GLVKQH+DS+NYFV+  ++ I++AN++I S IDP  +L
Sbjct: 39   LMDPIKTVEDKWELVPAFLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYL 98

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G+P     D +   + PH CRL D+TY+A I VNIEY +G       + + +V
Sbjct: 99   KYTDITVGEPRRYDGDALQRPITPHECRLRDITYSAHIFVNIEYTRGG----KIIRRKNV 154

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGRIP+MLRS +CVL  K E ELA++ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 155  AIGRIPVMLRSNKCVLANKSEKELAKMSECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 214

Query: 200  DTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
            + D KKG ++ASVTSST   KSK+ +  + GK+YL  N   + IPI V  KAMG+++D+E
Sbjct: 215  EADTKKGTVSASVTSSTHERKSKSYVLTKHGKIYLKHNSLHEDIPIAVAFKAMGIQADRE 274

Query: 259  VVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR---EGR 314
            ++Q+V G D  +  L   ++EE A L IYT+++AL+++  + K S    P + R      
Sbjct: 275  ILQLVAGHDDIHKELFAINLEEAARLGIYTRKQALDFIGARAKASR--KPLSMRRPLSEE 332

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  +L  V +A+VPV   NFRPK  Y+A M+RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 333  ALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDYVGNKRLELAGQ 392

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+++  +D +L KP+R+  FD  +QF    D IT G  R +STGN+
Sbjct: 393  LLSLLFEDLFKKFNSDLKMNIDKVLKKPNRTVEFDAFNQFHFNGDYITSGFVRAISTGNW 452

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 453  SLKRFKMERAGITHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 512

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLAL TH+TTD EE P+  + + LGVED+ LL+G EL+ P+S++V  NG 
Sbjct: 513  PEGEACGLVKNLALTTHITTDVEEEPIARIAFTLGVEDIHLLTGAELYRPDSYVVYLNGN 572

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--G 610
            +LG  R P+ F    R+LRRAG++ EFVSV+ N   + VYIASDGGR+CRPL+I D   G
Sbjct: 573  VLGVTRFPQRFVLQFRRLRRAGRVSEFVSVYTNHHHQTVYIASDGGRICRPLIIVDAFTG 632

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEP 669
              R+ E HM++L  G R FDDFL  GLIEY+DVNEEN+A IA+YE +  P  TTH+EIEP
Sbjct: 633  HPRVTESHMQQLKSGARRFDDFLHNGLIEYVDVNEENDANIAMYEHEIKPQYTTHLEIEP 692

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FTILG +AGLIPYPHHNQSPRNTYQCAMGKQ  G I +NQL R+D+LLYL++YPQ+P++ 
Sbjct: 693  FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQGQGAIGYNQLIRIDTLLYLMLYPQQPMVK 752

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            +RTIEL+GYDKL AG N+ VAVMSYSGYDIEDA+V+NK+SLDRGFGR   +KK + + +K
Sbjct: 753  SRTIELIGYDKLPAGTNSMVAVMSYSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRK 812

Query: 790  YANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            Y N T DR+      D TG   +R            IL+ DG+A  GE ++  DVY+NK+
Sbjct: 813  YPNGTHDRLADAPVDDTTGKRQKRYD----------ILEADGIAGVGERVEQGDVYVNKQ 862

Query: 847  SPL----ETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            +P+     +  +IM  +        Y+SA  +YK P   +  +D+V +    +    IK 
Sbjct: 863  TPVNANDNSSAAIMIGASNAAASVAYKSAPLSYKPP--VSGYIDQVLITDTDSDQTLIKA 920

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            LIR TRRPELGDKFSSRHGQKGVCG IVQQED PF+++GI PD+IMNPHGFPSRMTVGKM
Sbjct: 921  LIRQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFTDQGINPDIIMNPHGFPSRMTVGKM 980

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IELL GKAGV  G   YG+AFG        VE +S  LV++G++Y GK+ + SGITG PL
Sbjct: 981  IELLSGKAGVITGTLQYGTAFG-----GSKVEDMSALLVENGYNYAGKETLTSGITGQPL 1035

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            + Y++ GPIYYQ+LKHMV DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI Y
Sbjct: 1036 ECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY 1095

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GA+ L+ ERLM+SSD F V  C+ CGL+GY       G C  C +  ++  + +PY  KL
Sbjct: 1096 GATQLLLERLMISSDAFTVHACQKCGLMGY------NGFCPYCSSSKHVVQLTIPYGTKL 1149

Query: 1141 LIQELQSMNIVPRLKLAEA 1159
            ++QEL +M +VPRL L +A
Sbjct: 1150 MLQELMAMQVVPRLVLEDA 1168


>gi|402220302|gb|EJU00374.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
          Length = 1151

 Score = 1297 bits (3357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1170 (54%), Positives = 844/1170 (72%), Gaps = 56/1170 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L+ P+K+V DK+ LLP FLKV+GLVKQH+DSFNYFV+  +++I+RAN+ + S +DP  
Sbjct: 9    KNLSDPIKTVEDKWLLLPAFLKVKGLVKQHVDSFNYFVDVDLQQILRANNLVTSDVDPRF 68

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-----LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            ++++  + +G P        E      + PH CRL D TY+  I VN+EY++G+      
Sbjct: 69   YIKYTHIAVGPPERADPDQGESPERFSVTPHECRLRDTTYSGRITVNVEYIRGNKK---- 124

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            + +  + IGR+PIMLRS +CVL GK EAELAR+ ECPLDPGGYF++KGTEKV+L+QEQLS
Sbjct: 125  IIRRGIEIGRLPIMLRSNKCVLTGKSEAELARMQECPLDPGGYFVVKGTEKVILVQEQLS 184

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNR+I++TD  KG + ASVTSST   KSKT +  +K K+YL  N   + IPI +V+KA+G
Sbjct: 185  KNRIIVETDPSKGVVMASVTSSTHERKSKTYVLTKKNKIYLKHNSVTEDIPICIVLKAVG 244

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS---TFGSPP 308
            ++SD+E++Q+V G +  Y      ++E+ A L ++TQ +ALEY+  +VK +    FG+P 
Sbjct: 245  VQSDKEILQLVCGHNEEYRESFAANLEDAARLGVFTQRQALEYMGSRVKVNRPRPFGAPL 304

Query: 309  NDREG-------RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
               +G        A   L  + LA+V +   +FRPK  Y+AVM+RR++ AM ++  +DD+
Sbjct: 305  AGTQGPRRPAWEEAMEALATIVLAHVEMEGLDFRPKAVYIAVMVRRVLMAMKDEKLVDDR 364

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV----RD 417
            DYVGNKRLEL+GQL++LLFEDLFK    +++  +D +L KPSR+  +D+ + +      +
Sbjct: 365  DYVGNKRLELAGQLLALLFEDLFKKFNQDLKMNIDKVLKKPSRTEEYDVIKALTFHAQSE 424

Query: 418  SITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
             IT G  R +STGN+ +KRFKM R G+T VL+RLSF+  LG MTR++ QFEK+RKVSGPR
Sbjct: 425  GITQGFIRAISTGNWSLKRFKMDRAGVTHVLSRLSFVSALGMMTRITSQFEKTRKVSGPR 484

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
            ALQPSQWGMLCP DTPEGEACGLVKNLALMTH+TTD EE P++ + + LGVED+ L +G 
Sbjct: 485  ALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIVRVAFMLGVEDINLATGP 544

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H+P++F+V  NG I+G  R+P  F   +RKLRRAG+I EFVSV++N   + V+IA+DG
Sbjct: 545  EIHHPDTFMVNVNGSIIGLTRQPGRFVVALRKLRRAGRISEFVSVYINHHHKTVHIAADG 604

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP++I +KG  R+ E H+K L  G  +FDDFLR+GL+EYLDVNEEN++ IALYE +
Sbjct: 605  GRICRPMIIVEKGRPRVTEDHIKLLKKGHVTFDDFLRKGLVEYLDVNEENDSYIALYERE 664

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
              P TTH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LL
Sbjct: 665  ILPTTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLL 724

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y++VYPQ+P++ TRTIEL+ YDKL AGQNATVAVMSYSGYDIEDA ++N++SLDRG+GRC
Sbjct: 725  YVMVYPQQPMVKTRTIELINYDKLPAGQNATVAVMSYSGYDIEDASMINRASLDRGYGRC 784

Query: 778  IVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
             V +K   + +KY N T DR+      + TG   ++             L  DG+A  GE
Sbjct: 785  QVYRKNVTLIRKYPNGTFDRLADAPIDEVTGRPPDKYSA----------LQADGIAGVGE 834

Query: 835  IIKPNDVYINKESPLET-----RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             ++P DVYINK+SP          +++  T  +  +Y++   TY+ P G   +VD+V L 
Sbjct: 835  QLRPGDVYINKQSPANANDNSFNANVLDSTSTSLVQYKNTPMTYRSPVG--GIVDKVMLT 892

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
              +N    +K LIR TRRPELGDKFSSRHGQKGVCG I+ +ED PF+++GI PD+I NPH
Sbjct: 893  ETENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIINEEDMPFNDQGIKPDVIFNPH 952

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
            G PSRMTVGKMIELL GKAGV  G+  YG+AFG        VE +S+ L++ GF+Y GKD
Sbjct: 953  GMPSRMTVGKMIELLAGKAGVLKGKLQYGTAFG-----GSKVEDMSQILIEKGFNYAGKD 1007

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
             + SG+TG P++AY++ GPIYYQKLKHMV+DKMH+R  GPR +LTRQPTEGR+R+GGLR+
Sbjct: 1008 YLTSGLTGEPMEAYVYFGPIYYQKLKHMVMDKMHSRARGPRAVLTRQPTEGRSRDGGLRL 1067

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDCLI YGA+ L+ ERLM+SSD FE+  C+ CGLLGY       G C  CK+   +
Sbjct: 1068 GEMERDCLIGYGATQLLLERLMISSDAFEINACQECGLLGY------NGWCPLCKSSKRV 1121

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            + + +PYA KLL QEL +MN+VPRL L +A
Sbjct: 1122 AKLTIPYAAKLLFQELMAMNVVPRLILDDA 1151


>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
 gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
          Length = 1143

 Score = 1296 bits (3355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1146 (56%), Positives = 822/1146 (71%), Gaps = 41/1146 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   V +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN  I+S +DP  
Sbjct: 29   KKLTDDVSTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+R+GQ S           PH CRL DMTY+API V+IEY +G    +  +   D
Sbjct: 89   YLKYVDIRVGQRS-NASSKDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHKD 143

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V IGR+PIMLRS +C+L+  DE  +ARL ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 144  VEIGRMPIMLRSNKCILHNSDEKTMARLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 203

Query: 199  IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D KK  + ASVTSST   KSKT +  +  K+YL  N   +++PI+VV+KA G+ SD 
Sbjct: 204  VEADEKKAIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGIVSDL 263

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            EV+Q+V G D  Y  +   ++EE + L +YTQ++ALEY+  KVK          +EG   
Sbjct: 264  EVMQLVCGNDSSYQDIFAVNLEEASKLGLYTQQQALEYIGSKVKTVRRQKLSVLQEG--I 321

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+GQL+
Sbjct: 322  EAIATTVIAHLTVAALDFREKALYIAMMTRRVVMAMQNYKMVDDRDYVGNKRLELAGQLI 381

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ +
Sbjct: 382  SLLFEDLFKKFNNDFKASIDKVLKKPNRAMEYDALLSINVHSNNITSGLSRAISTGNWSL 441

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 442  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPE 501

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD+EE P+  LC+ LGVED+ L+    LH    + V  NG ++
Sbjct: 502  GEACGLVKNLALMTHITTDDEEEPIKKLCFILGVEDITLIDSASLHL--HYGVYLNGTLI 559

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  + P  F    R LRR+GKI EF+S++ N   + V+IA+DGGR+CRPL+I   G SR+
Sbjct: 560  GTTKFPVKFVSQFRNLRRSGKISEFISIYTNSHHKAVHIATDGGRICRPLIIVSNGKSRV 619

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H+KELL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D  P+ TH+EIEPFT+LG
Sbjct: 620  TSEHLKELLEGRLVFDDFLKLGLVEYLDVNEENDSFIALYEQDIAPEITHMEIEPFTVLG 679

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
              AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TIE
Sbjct: 680  ACAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE 739

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVA+MSYSGYDIEDA+V+NKSS+DRGFGRC   +K TA+ ++Y N T
Sbjct: 740  LIDYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTAVLKRYPNHT 799

Query: 795  SDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             D I  +R +  G       +  H +     L  DGL   G  +    +YINK  P    
Sbjct: 800  QDIIGGMRVNENGE-----PIWQHKS-----LGPDGLGEVGMKLDSGQIYINKSVPTNAS 849

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
              +++   QT S+YR     Y+ P  E   +D+V +    N    IK L+R  RRPELGD
Sbjct: 850  EGVLT---QTQSQYRETPVIYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGD 904

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IVQQED PFS++G+ PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  
Sbjct: 905  KFSSRHGQKGVCGIIVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVMN 964

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+ FG        +E +S+ LV +GF+Y+GKDM+YSG+TG  LQAYIF GPIYYQ
Sbjct: 965  GSLEYGTCFG-----GSKLEDMSQILVDNGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQ 1019

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM 
Sbjct: 1020 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMT 1079

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV+VC  CGL+GY      +G C+TC++ ++I+ M +PYA KLL QEL SMNI P
Sbjct: 1080 SSDAFEVEVCEKCGLMGY------SGWCTTCRSAEHINKMSIPYAAKLLFQELLSMNIAP 1133

Query: 1153 RLKLAE 1158
            RL+L +
Sbjct: 1134 RLRLED 1139


>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
 gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
          Length = 1148

 Score = 1296 bits (3354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1147 (56%), Positives = 822/1147 (71%), Gaps = 43/1147 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN  I+S +DP  
Sbjct: 34   KKLTDEINTAEDKWHLLPAFLKVKGLVKQHLDSFNYFVDIDLKKIIKANQTILSDVDPEF 93

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+RIG+ S +     + L P H CRL DMTY+API V+IEY +G    +  +   
Sbjct: 94   YLKYVDIRIGKKSTS--STKDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHK 147

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            DV IGR+PIMLRS +C LYG DEAE+A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 148  DVEIGRMPIMLRSNKCTLYGCDEAEMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 207

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   ++IPI++V+KA G+ S+
Sbjct: 208  IVEADEKKGIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSISEEIPIVIVLKACGVVSE 267

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
             E++Q+V G D  Y  +   +IEE +  +IYTQ++ALEY+  KVK          +EG  
Sbjct: 268  LEIMQLVCGNDSSYQDIFAVNIEEASKFNIYTQQQALEYIGAKVKTMRRQKLTVLQEG-- 325

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               +    +A++ V   NFR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+GQL
Sbjct: 326  IEAIATTVIAHLTVEALNFREKALYMAMMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQL 385

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
            +SLLFEDLFK   S+ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ 
Sbjct: 386  ISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWS 445

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTP
Sbjct: 446  LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTP 505

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    LH   ++ V  NG +
Sbjct: 506  EGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDINLIDSASLHL--NYSVFLNGTL 563

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G  R P+ F    R LRR+ K+  F+S+  N +Q+ V+IA+DGGR+CRPL+I   G S 
Sbjct: 564  IGSARFPRKFVSHFRALRRSCKVSAFISIHTNSEQKAVHIATDGGRICRPLIIVTNGESH 623

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +K HH+K LL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D     TH+EIEPFT+L
Sbjct: 624  VKAHHLKRLLEGELVFDDFLKLGLVEYLDVNEENDSFIALYEKDIDQAVTHLEIEPFTVL 683

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TI
Sbjct: 684  GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 743

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC   +K T + ++Y N 
Sbjct: 744  ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCETRRKTTTVLKRYPNH 803

Query: 794  TSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            T D I  +R D  G    + +           L  DGL   G  +    +YINK  P  +
Sbjct: 804  TQDIIGGMRVDEKGEPIWQHKA----------LGPDGLGEVGMKLDSGQIYINKSVPTNS 853

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
              +     G   + YR     Y+ P  E   +D+V +    N    IK L+R  RRPELG
Sbjct: 854  TDAF---NGAAQASYRETPVIYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQHRRPELG 908

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IV+QED PF+++G+ PD+IMNPHGFPSRMTVGKMIEL+ GKAGV 
Sbjct: 909  DKFSSRHGQKGVCGIIVKQEDMPFNDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKAGVL 968

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G   YG+ FG        +E +S+ LV+ GF+Y+GKDM+YSGITG  LQAYIF GPIYY
Sbjct: 969  NGSLEYGTCFG-----GSKLEDMSKILVEKGFNYSGKDMLYSGITGECLQAYIFFGPIYY 1023

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM
Sbjct: 1024 QKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM 1083

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSD FEV VC  CGL+GY      +G C+TCK+ +N+  M +PYA KLL QEL SMNI 
Sbjct: 1084 ISSDAFEVDVCAKCGLMGY------SGWCTTCKSAENVIKMTIPYAAKLLFQELLSMNIA 1137

Query: 1152 PRLKLAE 1158
            PRL+L +
Sbjct: 1138 PRLRLED 1144


>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1157

 Score = 1296 bits (3354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1154 (56%), Positives = 828/1154 (71%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L   + +  DK+ LLP FLK++GLVKQHLDSFNYFV+T ++KI++AN  ++S +DP  
Sbjct: 28   KRLEDEINTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDTDLKKILKANSLVLSDVDPDF 87

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            ++++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    +  +  N
Sbjct: 88   YVKYLDIRVGHKSTSAPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRG----RKIIRHN 143

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+P+MLRS +C+L G DE ++A++ ECPLDPGGYF++ GTEKV+L+QEQLSKNR+
Sbjct: 144  DLEIGRMPVMLRSNKCMLDGLDERQMAQVDECPLDPGGYFVVNGTEKVILVQEQLSKNRI 203

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  + GK+YL  N   + +PI++V+KA G+ SD
Sbjct: 204  IVEADDKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIGEDVPIVIVLKAAGITSD 263

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G +P Y  L + + EE A L+++TQ++AL YL  +VK     G+P   +   
Sbjct: 264  LEILQLVCGSNPHYQDLFVVNFEEAARLEVFTQQQALLYLGKRVKTIRRAGAPKLSQLQE 323

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V N  F+ K FY+A+M RR+V AM N   +DD+DYVGNKRLEL+GQ
Sbjct: 324  GIEAIATTIVAHLTVSNLQFKEKAFYMAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 383

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D IL KPSR++ FD  LS  I  ++IT+GL R +STGN+
Sbjct: 384  LMSLLFEDLFKKFNSDFKANIDKILKKPSRTTEFDALLSINIHSNNITMGLNRAISTGNW 443

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 444  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 503

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LC  LG E +  L    LH   +F V  NG 
Sbjct: 504  PEGEACGLVKNLALMTHITTDDEELPIKKLCIALGCESILGLDSSTLHVDGNFGVFLNGT 563

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G  R P  F +  R LRRAGK+  F+S++ N   + V++A+DGGR+CRPL+I +K  S
Sbjct: 564  LIGATRFPVKFVNDFRHLRRAGKVSAFISIYTNTHHQAVHLATDGGRICRPLIIVEKNKS 623

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD----ATPDTTHIEIE 668
            +++  H+K+LL G   FDDFLREGL+EYLDVNEEN++LIALYE D    A    TH+EIE
Sbjct: 624  KVQSEHLKKLLRGEWQFDDFLREGLVEYLDVNEENDSLIALYEKDIGSNANATVTHLEIE 683

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++
Sbjct: 684  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYFMVYPQQPMV 743

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSSLDRGFGRC VV+K T   +
Sbjct: 744  KTKTIELINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLK 803

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY N T D IL   R     E +   H +      L  DGL   G  I+   V+ NK  P
Sbjct: 804  KYPNHTKD-ILSGMRVDENNEPI-FPHQA------LGPDGLGEVGSRIENGQVFANKFVP 855

Query: 849  LETRGSI----MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
              +  S     M    Q +S +R A Q YKGP  E   VD+V +    N    +K L+R 
Sbjct: 856  TNSGESTFAGGMQQQPQAES-HREAAQYYKGP--EPSYVDQVMMSVSDNDQALVKVLLRQ 912

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPELGDKFSSRHGQKGVCG IVQ ED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+
Sbjct: 913  TRRPELGDKFSSRHGQKGVCGIIVQHEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELI 972

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAGV  G   YG+ FG        +E +S+ LV  GFSY+GKDM+YSGITG  LQAYI
Sbjct: 973  SGKAGVLNGSLEYGTCFG-----GSKLEDMSKILVSKGFSYSGKDMLYSGITGECLQAYI 1027

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS 
Sbjct: 1028 FFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQ 1087

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD FEV VC  CGL+GY +       C+TCK  +NI  M +PYA KLL QE
Sbjct: 1088 LLLERLMISSDAFEVDVCNKCGLMGYNSW------CTTCKGSENIIKMTIPYAAKLLFQE 1141

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMNI PRL+L +
Sbjct: 1142 LLSMNIAPRLRLGD 1155


>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
          Length = 1133

 Score = 1296 bits (3353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1161 (56%), Positives = 830/1161 (71%), Gaps = 49/1161 (4%)

Query: 11   KDEQLPD-------KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            KDE   D        +KL   V +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI
Sbjct: 5    KDEAFEDLLKPVYKGKKLTDEVNTADDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKI 64

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEY 123
            ++AN  I+S +DP  +L++ D+R+GQ S +     + + PH CRL DMTY+API V+IEY
Sbjct: 65   IKANQLILSDVDPEFYLKYVDIRVGQRSGSPHK-DQLVPPHECRLRDMTYSAPIYVDIEY 123

Query: 124  VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTE 183
             +G +     M KN V IGR+PIMLRS +C+L+G DE  +ARL ECPLDPGGYFI+ GTE
Sbjct: 124  TRGRNI---IMHKN-VEIGRMPIMLRSNKCILHGADEKMMARLSECPLDPGGYFIVNGTE 179

Query: 184  KVLLIQEQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKI 242
            KV+L+QEQLSKNR+I++ D+K +I  ASVTSST   KSKT +  + GK+YL  N   +++
Sbjct: 180  KVILVQEQLSKNRIIVEADEKKDIVQASVTSSTHERKSKTYVVTKNGKIYLKHNSIAEEV 239

Query: 243  PIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR 301
            PI++V+KA G+ SD E++Q+V G D  Y  +   ++EE A L+I TQ++ALEY+  KVK 
Sbjct: 240  PIVIVLKAAGIISDLEIMQLVCGNDSSYQDIFSVNLEEAAKLNICTQQQALEYIGAKVKT 299

Query: 302  STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
                     +EG     +    +A++ V   +FR K  Y+A M RR+V AM N   +DD+
Sbjct: 300  MRRQKLTILQEG--IEAIATTIIAHLTVEALDFREKALYIATMTRRVVMAMHNPKMVDDR 357

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSI 419
            DYVGNKRLEL+GQL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++I
Sbjct: 358  DYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNI 417

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            T GL R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRAL
Sbjct: 418  TSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRAL 477

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
            QPSQ+GMLC  DTPEGEACGLVKNLALMTH+TTD+EE P+  LCY LGVE + LL    L
Sbjct: 478  QPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIRKLCYVLGVEPISLLDSASL 537

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
            H   ++ V  NG ++G  + P  F    R LRR GK+ EF+S++ N+    V+IA+DGGR
Sbjct: 538  HL--NYGVYLNGTLIGTTKFPSNFVSRFRFLRRTGKVSEFISIYTNDHHNAVHIATDGGR 595

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            +CRPL+I   G S ++  H+K LL G   FDDFL+ GL+EYLDVNEEN++ IALYE D T
Sbjct: 596  ICRPLIIVKDGKSMVEAEHLKRLLSGELVFDDFLKLGLVEYLDVNEENDSYIALYEKDIT 655

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
             D TH+EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL
Sbjct: 656  HDITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYL 715

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            ++YPQ+P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC  
Sbjct: 716  MIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCET 775

Query: 780  VKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
             +K T + +KY N T D +  +R D  G       +  H +     L  DGL   G  I+
Sbjct: 776  RRKTTTVLKKYPNHTKDALCGMRVDENGEA-----IWQHES-----LGPDGLGEVGLKIR 825

Query: 838  PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
               +YINK  P+++  ++     Q    YR     Y+ P  E  ++D+V + +  N    
Sbjct: 826  SGQIYINKSVPVQSSDAMAVNQAQ----YRETPVIYRAP--ELSIIDQVMMSTSDNDQDL 879

Query: 898  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 957
            IK L+R  RRPELGDKFSSRHGQKGVCG IVQQED PF+++GICPD+IMNPHGFPSRMTV
Sbjct: 880  IKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRMTV 939

Query: 958  GKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITG 1017
            GKMIEL+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGITG
Sbjct: 940  GKMIELISGKAGVLNGSLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGITG 994

Query: 1018 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1077
              LQAYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+
Sbjct: 995  ECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCV 1054

Query: 1078 IAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            IAYGAS L+ ERLM+SSD FEV VC  CGL+GY      +G CSTCK+ ++I  M +PYA
Sbjct: 1055 IAYGASQLLLERLMISSDAFEVDVCSNCGLMGY------SGWCSTCKSAEHIIKMTIPYA 1108

Query: 1138 CKLLIQELQSMNIVPRLKLAE 1158
             KLL QEL +MNI PRL+L +
Sbjct: 1109 AKLLFQELLAMNIAPRLRLED 1129


>gi|320581721|gb|EFW95940.1| DNA-directed RNA polymerase III [Ogataea parapolymorpha DL-1]
          Length = 1138

 Score = 1295 bits (3352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1148 (56%), Positives = 821/1148 (71%), Gaps = 33/1148 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FL+V+GLVKQHLDSFN+FV+T ++KI++AN++++S +DP  
Sbjct: 14   KSLTDPINTAEDKWNLLPAFLQVKGLVKQHLDSFNFFVDTDLKKIIQANEKVLSDVDPEF 73

Query: 79   FLRFKDVRIGQPSMTVDGVSEKL-NPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G  S      +E L  PH CRL D+TY+API V++EY +G    +  +   
Sbjct: 74   YLKYLDIRVGYKSGGNPNETEVLLPPHECRLRDLTYSAPIYVDVEYTRG----RKIIIHR 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIMLRS +C+L GK+EA++A L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 130  DLEIGRMPIMLRSNKCILNGKNEAQMAYLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 189

Query: 198  IIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D+K NI  ASVTSST   KSKT +  +  K+YL  N   ++IPI++V+KA G+ SD
Sbjct: 190  IVEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSISEEIPIVIVLKAAGLVSD 249

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G D  Y  L   + EE A L IY+Q++ALEY+  KVK      +P       
Sbjct: 250  LEILQLVCGNDSVYQDLFAVNFEEAAKLGIYSQKEALEYIGRKVKTIRRLNAPKLSILQE 309

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V N +F+ K  Y+A+M RR++ AM N   +DD+DYVGNKRLEL+GQ
Sbjct: 310  GIEAIATTVIAHITVENLDFKEKALYIAIMTRRVIMAMHNPKLVDDRDYVGNKRLELAGQ 369

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   ++ +  +D IL KPSR S FD  L   I   +IT GL R +STGN+
Sbjct: 370  LMSLLFEDLFKKFNNDFKANLDKILKKPSRVSEFDALLHINIHSSNITTGLNRAISTGNW 429

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 430  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDT 489

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LCY LG ED+ ++    LHN  +F V  NG 
Sbjct: 490  PEGEACGLVKNLALMTHITTDDEEDPIKKLCYILGAEDISVIDSSTLHNNGTFGVHLNGT 549

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G  R P  F    R LRR GK+  FVS+F N  Q  V+IA+DGGR+CRPL+I + G +
Sbjct: 550  LIGTTRFPNVFVSKFRHLRRTGKLSAFVSIFTNVHQSAVHIAADGGRICRPLIIVENGKA 609

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            ++   H+K L DG  SFDDFL  GL+EYLDVNEEN++LIALYE D T  TTH+EIEPFT+
Sbjct: 610  KVTAEHLKRLRDGEWSFDDFLTNGLVEYLDVNEENDSLIALYEKDITGSTTHLEIEPFTV 669

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+ YPQ+P++ T+T
Sbjct: 670  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMCYPQQPMVKTKT 729

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V++K TA+ ++Y N
Sbjct: 730  IELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKTTAVLKRYPN 789

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             + D IL   R     +   +  H       L  DGLA  G  ++    YINK  P    
Sbjct: 790  HSKD-ILAGMRVKEDGK--PIFQHE-----ALGPDGLAEVGVEVQSGQTYINKCVPTNAT 841

Query: 853  GSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
             S++   PT     ++R     Y+ P   + VVD+V +    N    IK L+R TRRPEL
Sbjct: 842  ESVVGGQPTINQQQQHRETPVNYRAP--VSSVVDQVMMSVSDNDQALIKVLLRQTRRPEL 899

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKM+EL+ GKAGV
Sbjct: 900  GDKFSSRHGQKGVCGIIVQQEDMPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKAGV 959

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G   YG+ FG        +E +S+ L+  GF+Y+GKDM+YSGITG  LQAYIF GPIY
Sbjct: 960  LDGSLQYGTCFG-----GSKLEDMSQILIDKGFNYSGKDMLYSGITGEALQAYIFFGPIY 1014

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERL
Sbjct: 1015 YQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERL 1074

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            M+SSD F+V VC  CGL+GY +       C +CK  + +  M +PYA KLL QEL SMNI
Sbjct: 1075 MLSSDAFDVDVCNSCGLMGYNSW------CPSCKTSEGVVKMTIPYAAKLLFQELISMNI 1128

Query: 1151 VPRLKLAE 1158
             PRLK+A+
Sbjct: 1129 APRLKMAD 1136


>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
 gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
          Length = 1154

 Score = 1293 bits (3347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1146 (56%), Positives = 820/1146 (71%), Gaps = 40/1146 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN  I+S +DP  
Sbjct: 38   KKLTDEINTADDKWHLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEF 97

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+R+G+ S T         PH CRL DMTY+API V+IEY +G    +  +   D
Sbjct: 98   YLKYVDIRVGKKS-TSSARDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHKD 152

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V IGR+PIMLRS +C LYG DE ++A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 153  VEIGRMPIMLRSNKCTLYGADEKQMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 212

Query: 199  IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D KKG + ASVTSST   KSKT +  + GK+YL  N   ++IPI++V+KA G+ SD 
Sbjct: 213  VEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIVIVLKACGIVSDL 272

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            E++Q+V G D  Y  +   ++EE A L++YTQ++ALE++  KVK          +EG   
Sbjct: 273  EIMQLVCGNDSSYQDIFAVNLEEAAKLNLYTQQQALEFIGAKVKTMRRQKLSILQEG--I 330

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V   +FR K  Y+A+M RR+V A+ N   +DD+DYVGNKRLEL+GQ+V
Sbjct: 331  EAIATTVVAHLTVEALDFREKALYMAMMTRRVVMAIHNPKMVDDRDYVGNKRLELAGQMV 390

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   S+ + T+D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ +
Sbjct: 391  SLLFEDLFKKFNSDFKATIDKVLEKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSL 450

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 451  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPE 510

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+T+D+EE P+  +CY LGVED+ L+    LH   +F V  NG ++
Sbjct: 511  GEACGLVKNLALMTHITSDDEEEPIKRVCYVLGVEDISLIDSASLHL--NFGVYLNGTLI 568

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R P  F    R LRR GK+ EF+S++ N  Q+ V+IA+DGGR+CRPL+I   G S +
Sbjct: 569  GTTRFPIKFVSQFRHLRRTGKVSEFISIYTNSHQKAVHIATDGGRICRPLIIVTNGKSHV 628

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H++ LL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D    +TH+EIEPFT+LG
Sbjct: 629  TADHLRSLLEGKLVFDDFLKLGLVEYLDVNEENDSFIALYEKDINVASTHMEIEPFTVLG 688

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TIE
Sbjct: 689  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE 748

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC   +K T I ++Y N T
Sbjct: 749  LIDYDKLPAGQNATVAVMSYSGYDIEDALVINKASIDRGFGRCETRRKTTTILKRYPNHT 808

Query: 795  SDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             D I  +R D  G    + +           L  DGL   G  +    +YINK  P    
Sbjct: 809  QDIISGMRVDENGDPIWQHKA----------LGPDGLGEVGMKLDSGQIYINKAVPTNPT 858

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
              + +   Q  S+YR     Y+ P  E   +D+V +    N    IK L+R  RRPELGD
Sbjct: 859  SDLNAAPEQ--SQYRDTPVMYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGD 914

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IVQQED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  
Sbjct: 915  KFSSRHGQKGVCGIIVQQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLN 974

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGITG  LQAYIF GPIYYQ
Sbjct: 975  GSLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQ 1029

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+
Sbjct: 1030 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMI 1089

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PYA KLL QEL SMNI P
Sbjct: 1090 SSDAFEVDVCDECGLMGY------SGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAP 1143

Query: 1153 RLKLAE 1158
            RL+L +
Sbjct: 1144 RLRLED 1149


>gi|302676710|ref|XP_003028038.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
 gi|300101726|gb|EFI93135.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
          Length = 1142

 Score = 1293 bits (3346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1151 (55%), Positives = 830/1151 (72%), Gaps = 43/1151 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  PVK+V DK+ LLP FLKV+GLVKQH+DSFN+FV+  I+ IV+AN++I S +DP  ++
Sbjct: 23   LTDPVKNVEDKWLLLPAFLKVKGLVKQHIDSFNHFVDADIKNIVKANNKITSDVDPRFWI 82

Query: 81   RFKDVRIGQPSMTVDGVSEK--LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +F D+ +G P        +K  + PH CRL D+TY+API V  +Y +G      ++ +  
Sbjct: 83   KFMDIEVGFPDRNEPEAHDKKSITPHECRLRDITYSAPITVTFQYTRGR-----SIVQRR 137

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
              IGR+PIMLRS +CVL G+ EA+LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I
Sbjct: 138  QTIGRLPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFVVKGTEKVILVQEQLSKNRII 197

Query: 199  IDTDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            ++TD  KG + AS TSST   VKSK  +  +KG++YL  N   + +PI++ +K +G++SD
Sbjct: 198  VETDPVKGIVQASCTSSTHGGVKSKAYVVTKKGRIYLRHNSIHEDVPIVIALKGLGIQSD 257

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREG 313
            +E++ +  G    Y      ++E+ A + ++TQ++ALE+L  +V+  R   G P      
Sbjct: 258  KEIMLLTAGNTEAYKIAFSANLEDAAKMGVFTQQQALEWLGARVRVNRRPMG-PRRPAYE 316

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A   L  + LA+V +   +FRPK  +VA M RR++ AM ++  +DD+DYVGNKRLEL+G
Sbjct: 317  EALEALATLLLAHVRMDGLDFRPKAIFVATMTRRVLMAMHDEKMVDDRDYVGNKRLELAG 376

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGN 431
            QL++LLFEDLFKT  S ++  +D +L KPSR++ FD   +     D IT G  R +STGN
Sbjct: 377  QLLALLFEDLFKTYCSNLKAAIDKVLKKPSRTTEFDAYNTMMFQGDHITAGFVRAISTGN 436

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRF+M R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP D
Sbjct: 437  WSLKRFRMERAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 496

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD +E P+I L Y LGVED+ L SG E++  ++F+V  NG
Sbjct: 497  TPEGEACGLVKNLALMTHITTDVDEEPIIRLAYLLGVEDIALASGSEIYGTHAFIVSVNG 556

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  + P  F    RK+RRA +I EFVS+++N   R V IA+DGGR+CRP++I +KG 
Sbjct: 557  NIIGLTKYPARFVTNFRKMRRARRISEFVSIYINHHHRTVQIATDGGRICRPMIIVEKGR 616

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
            SR+   H+  L  G  +FDDFLR+GL+EYLDVNEEN+A IALYE D  P TTH+EIEPFT
Sbjct: 617  SRVHSEHIALLKKGAATFDDFLRKGLVEYLDVNEENDAYIALYEADIVPTTTHLEIEPFT 676

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I FNQL R+D+LLYL VYPQ+P++ T+
Sbjct: 677  LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGFNQLNRIDTLLYLSVYPQQPMVKTK 736

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYDKL AGQNATVAVMSYSGYDIEDA+++NK+SLDRG+GRC V++K   + +KY 
Sbjct: 737  TIELIGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLVRKYP 796

Query: 792  NSTSDRILRP--DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            N T DR+     D  G  A++  ++            DGLA  GE + P DVY+NK+SP 
Sbjct: 797  NGTYDRLADAPVDENGNIAKKYDIIQA----------DGLAGVGERVDPGDVYVNKQSP- 845

Query: 850  ETRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             T  +  +  GQ  +  Y++   TYK P      +D+V +   +N  L +K LIR TRRP
Sbjct: 846  -TNATDNTFNGQAAAVPYKNTPLTYKSPVAGN--IDKVLISDTENDQLLVKVLIRQTRRP 902

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL GKA
Sbjct: 903  ELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKA 962

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G+  YG+AFG        VE +S  L+++GFSY GKDM+ SGITG P++AY++ GP
Sbjct: 963  GVLTGKLQYGTAFG-----GSKVEDMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGP 1017

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV+DKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLI YGA+ L+ E
Sbjct: 1018 IYYQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLE 1077

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD FEV  C+ CGL+GY       G C+ CK+   ++ + +PYA KLL QEL +M
Sbjct: 1078 RLMISSDKFEVDACQECGLMGY------NGWCTYCKSSKKMAQLTIPYAAKLLFQELMAM 1131

Query: 1149 NIVPRLKLAEA 1159
            N+VPRL L +A
Sbjct: 1132 NVVPRLVLDDA 1142


>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1166

 Score = 1293 bits (3346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1147 (55%), Positives = 821/1147 (71%), Gaps = 34/1147 (2%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL  P+ +  DK+ LLP FLKV+GLVKQHLDSFNYF +  +++I++AN+ +VS +DP+ 
Sbjct: 40   KKLTDPITTAKDKWALLPAFLKVKGLVKQHLDSFNYFCDVELKQIIKANEMVVSEVDPNF 99

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            FLR+ D+R+G P          + P+ CRL DMTYAAP+ V+I+YV+G    K  + +N 
Sbjct: 100  FLRYVDIRVGLPERQDSDSDADITPNECRLRDMTYAAPVFVDIQYVRG----KAVIARNG 155

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V IGR+PIMLRS +CVL  K E E+A L ECPLDPGGYFII GTEKV+L+QEQLSKNR+I
Sbjct: 156  VNIGRLPIMLRSNKCVLTNKSEHEMAVLKECPLDPGGYFIINGTEKVILVQEQLSKNRII 215

Query: 199  IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D KK  + ASVTSST   KS T +  +KG +YL  N   + +PI++V+KA+G++SD 
Sbjct: 216  VEADTKKQIVQASVTSSTHERKSNTYVLSKKGAIYLRHNSVSEDVPIVLVLKALGIQSDH 275

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS-TFGSPPNDREGRA 315
            E++ MV G D  Y      + EEC+ L ++TQ++AL+Y   +V+ S    +        A
Sbjct: 276  EILLMVAGTDSVYQDTFSVNFEECSKLGVFTQQQALDYFGARVRTSRKILTTRKSYAHEA 335

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               L  + LA+VPV N NFRPK  Y+AVM RR++ AM N   +DD+DYVGNKRLEL+GQL
Sbjct: 336  LEALATIVLAHVPVKNLNFRPKALYIAVMTRRILMAMANPQLVDDRDYVGNKRLELAGQL 395

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD--SITVGLERTLSTGNFD 433
            +SLLFEDLFK    E++  +D IL KP+R+  FD    +     +IT G+ R +STGN+ 
Sbjct: 396  LSLLFEDLFKRFNGELKMNIDKILKKPNRTEEFDAYNILSGHGHTITQGMNRAISTGNWS 455

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLCP DTP
Sbjct: 456  LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTP 515

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD++E  +I L   LG ED+  +SG+EL+ P ++++  NG  
Sbjct: 516  EGEACGLVKNLALMTHITTDDDEEHVIRLAMVLGAEDVLAVSGQELYAPGAYVIFMNGTP 575

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
             G  R P  F    RK+RR GKI EFVS+F+N  Q  V+IA+DGGR+CRPL+I +   S+
Sbjct: 576  FGITRYPARFLTRFRKMRRMGKISEFVSIFINHHQGGVHIATDGGRICRPLIIVENKKSK 635

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +   H+K L  G  +F+DFL++GL+EY+DVNEEN+A IA+YE + +  TTH+EIEPFTIL
Sbjct: 636  VTLRHIKSLKAGKMTFEDFLKKGLVEYVDVNEENDAHIAIYEHEISASTTHLEIEPFTIL 695

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++ TRTI
Sbjct: 696  GAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTI 755

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL+ YDKL AGQNA VAVMSYSGYDIEDA+V+NKSS+DRGFGRC V++KY    +K+ N 
Sbjct: 756  ELIKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVLRKYVTTLKKHPNQ 815

Query: 794  TSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            T DRI   + D  G   ++ +          I++ DGLAA GE I+  + YI K+ P  T
Sbjct: 816  TMDRIGDRKSDEEGNPIKKHR----------IIEGDGLAAVGERIEQGESYILKQVPTHT 865

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
              +           Y+ A   YK  D     +D+V +   ++    IK L R TRRPELG
Sbjct: 866  ANNPAEGPQNRLGDYKDAAMNYKLTD--PAYIDKVMISCSESEQTIIKVLTRQTRRPELG 923

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IVQQED PF++ G CPD+IMNPHGFPSRMTVGKMIELL GKAGV 
Sbjct: 924  DKFSSRHGQKGVCGIIVQQEDMPFNDFGTCPDIIMNPHGFPSRMTVGKMIELLAGKAGVL 983

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G   YG+AFG        V+ +SE L+ HGF+Y+GKD + SGITG  LQAYIF GPIYY
Sbjct: 984  SGNLQYGTAFG-----GSKVQDMSEILISHGFNYSGKDFVTSGITGESLQAYIFFGPIYY 1038

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS L+ ERLM
Sbjct: 1039 QKLKHMVQDKMHSRARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLM 1098

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSD  E+ +C  CGL+GY      +  C+TC++   ++ MK+PYA KLL+QEL SMN++
Sbjct: 1099 LSSDVHEIDLCENCGLMGY------SSWCTTCESSKFVTRMKIPYAAKLLLQELLSMNVL 1152

Query: 1152 PRLKLAE 1158
             R+ L +
Sbjct: 1153 ARIVLED 1159


>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS 8797]
          Length = 1155

 Score = 1293 bits (3345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1144 (56%), Positives = 821/1144 (71%), Gaps = 37/1144 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +K+   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN+ I+S +DP  
Sbjct: 41   KKMTDQINTAEDKWHLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELILSDVDPEF 100

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+RIG+ S T         PH CRL DMTY+API V+IEY +G    +  +   D
Sbjct: 101  YLKYVDIRIGKRS-TSSANDHLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHKD 155

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V IGR+PIMLRS +C+L   +E E+ARL ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 156  VEIGRMPIMLRSNKCILSETNEREMARLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 215

Query: 199  IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D KKG + ASVTSST   KSKT +  +  K+YL  N   ++IPI++V++A G+ SD 
Sbjct: 216  VEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSIAEEIPIVIVLRACGIVSDL 275

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            E++Q+V G D  Y  +   + EE + L++YTQ++ALE++  KVK          +EG   
Sbjct: 276  EIMQVVCGNDSSYQDIFAVNFEEASKLNVYTQQQALEHIGTKVKTMRRQKLSTLQEG--I 333

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+GQL+
Sbjct: 334  EAIATTVVAHLTVEALDFREKALYMAMMARRVVMAMYNPKMVDDRDYVGNKRLELAGQLI 393

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK    + + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ +
Sbjct: 394  SLLFEDLFKKFNHDFKTSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSL 453

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 454  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPE 513

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ ++    LH   ++ V  NG ++
Sbjct: 514  GEACGLVKNLALMTHITTDDEEEPIKKLCYILGVEDITVIDSASLHL--NYGVYLNGTLV 571

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R P  F    R LRR GKI EF+S+++N  Q  V+IA+DGGR+CRPL+I   G S +
Sbjct: 572  GITRFPNRFVHQFRSLRRTGKISEFISIYINSHQHAVHIATDGGRICRPLIIVTAGKSHV 631

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D  P  TH+EIEPFTILG
Sbjct: 632  TADHLRKLLDGELVFDDFLKLGLVEYLDVNEENDSFIALYEKDLEPAITHMEIEPFTILG 691

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+ YPQ+P++ ++TIE
Sbjct: 692  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKSKTIE 751

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   +K T + ++Y N T
Sbjct: 752  LINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYPNHT 811

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             D I+   R     ER  +  H       L  DGL   G  +    VYINK  P  +   
Sbjct: 812  QD-IIGGMRVDENNER--IWQHE-----ALGPDGLGEVGMKLNSGQVYINKSVPTNSTEP 863

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                +G T+++YR     Y+ P  E+  +D+V +    N    IK L+R +RRPELGDKF
Sbjct: 864  F---SGNTEAQYRETPVIYRAP--ESSHIDQVMMSVSDNDQALIKVLLRQSRRPELGDKF 918

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGVCG IVQQED PFS++G+ PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  G 
Sbjct: 919  SSRHGQKGVCGIIVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNGT 978

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
              YG+ FG        +E +S+ LV  GF+Y+GKDM+YSG+TG  LQAYIF GPIYYQKL
Sbjct: 979  LEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKL 1033

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+SS
Sbjct: 1034 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISS 1093

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D FEV VC  CGL+GY      +G C+TCK+ +N+  M +PYA KLL QEL SMNI PRL
Sbjct: 1094 DAFEVDVCNKCGLMGY------SGWCTTCKSAENVIKMTIPYAAKLLFQELLSMNIAPRL 1147

Query: 1155 KLAE 1158
            +L E
Sbjct: 1148 RLDE 1151


>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
 gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
          Length = 1148

 Score = 1292 bits (3343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1146 (56%), Positives = 823/1146 (71%), Gaps = 44/1146 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFN+FV+  ++KI++AN  I+S +DP  
Sbjct: 33   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIIKANRLILSDVDPEF 92

Query: 79   FLRFKDVRIGQPSMTVDGVSEKL--NPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
            +L+F D+RIGQ S   +  S+ +   PH CRL DMTY+API V+IEY +G    +  +  
Sbjct: 93   YLKFIDIRIGQRS---NSSSKDILAPPHECRLRDMTYSAPIYVDIEYTRG----RNIVIH 145

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
             DV IG++PIMLRS +C+L G DE  +ARL ECPLDPGGYFI+ GTEKV+L+QEQLSKNR
Sbjct: 146  RDVEIGKMPIMLRSNKCILNGCDEQMMARLNECPLDPGGYFIVNGTEKVILVQEQLSKNR 205

Query: 197  VIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            +I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + +PI +V+KA G+ S
Sbjct: 206  IIVEADEKKGVVQASVTSSTHERKSKTYVVTKNDKIYLKHNSISEDVPIAIVLKAAGIVS 265

Query: 256  DQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            D E++Q+V G D  Y  +   ++EE A   IYTQ++ALEY+  KVK          +EG 
Sbjct: 266  DLEILQLVCGNDSSYQDIFAVNLEEAAKFKIYTQQQALEYIGTKVKTIRKQKLTALQEG- 324

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V   +FR K  Y+A+M RR+V A+ N   +DD+DYVGNKRLEL+GQ
Sbjct: 325  -IEAIATTVIAHLTVEELDFREKALYIAMMTRRVVMAIHNPKMVDDRDYVGNKRLELAGQ 383

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ + ++D +L KP+R+  +D  LS  +  ++IT GL R++STGN+
Sbjct: 384  LISLLFEDLFKKFTSDFKMSIDKVLKKPNRAMEYDALLSINVHCNNITSGLNRSISTGNW 443

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 444  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 503

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+  L    +H   S+ V  NG 
Sbjct: 504  PEGEACGLVKNLALMTHITTDDEEDPIKKLCYVLGVEDISSLDSATIHE--SYGVHLNGT 561

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G  R P  F    R LRRAGK+  F+S++ N  Q+ V+IA+DGGR+CRPL++ +KG S
Sbjct: 562  LVGTTRFPNKFVTQFRDLRRAGKVSAFISIYTNSHQQAVHIATDGGRICRPLIVIEKGKS 621

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             +K  H+++LL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D TP  TH+EIEPFT+
Sbjct: 622  LVKAEHLRDLLNGDLVFDDFLKLGLVEYLDVNEENDSFIALYEKDITPAMTHLEIEPFTV 681

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+T
Sbjct: 682  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKT 741

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+ YDKL AGQNATVAVMSYSGYDIEDA+++NKSS+DRGFGRC   +K T I ++Y N
Sbjct: 742  IELINYDKLPAGQNATVAVMSYSGYDIEDALILNKSSIDRGFGRCETRRKTTTILKRYPN 801

Query: 793  STSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
             T D I  +R D  G    + +           L  DGL   G  +    +YINK  P  
Sbjct: 802  HTQDIIGGMRVDENGKPIWQHEA----------LGPDGLGEVGMKVSSGQIYINKSIPTN 851

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
            T   + +    T S+Y+     Y+GP  E   VD+V +    N    IK L+R  RRPEL
Sbjct: 852  TAEGLEAIN--TQSQYKETPVMYRGP--EPSHVDQVMMSVSDNDQALIKVLLRQNRRPEL 907

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG IVQQED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV
Sbjct: 908  GDKFSSRHGQKGVCGLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMIELISGKAGV 967

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGITG  LQAYIF GPIY
Sbjct: 968  LNGSLEYGTCFG-----GSKLEEMSKILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIY 1022

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERL
Sbjct: 1023 YQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERL 1082

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            M+SSD FEV VC  CGL+GY      +G C+TC++ +NI  M +PYA KLL QEL SMNI
Sbjct: 1083 MISSDAFEVDVCDKCGLMGY------SGWCTTCRSAENIIKMTIPYAAKLLFQELLSMNI 1136

Query: 1151 VPRLKL 1156
             PRL++
Sbjct: 1137 APRLRM 1142


>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
 gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
          Length = 1150

 Score = 1292 bits (3343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1146 (56%), Positives = 821/1146 (71%), Gaps = 40/1146 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN  I+S +DP  
Sbjct: 34   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQVILSDVDPEF 93

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+R+G+ S T         PH CRL DMTY+API V+IEY +G    +  +   D
Sbjct: 94   YLKYVDIRVGKRS-TSSAKDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHKD 148

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V +GR+PIMLRS +C LYG DE E+A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 149  VELGRMPIMLRSNKCTLYGIDEKEMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 208

Query: 199  IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D KKG + ASVTSST   +SKT +  +  K+YL  N   ++IPI++V+KA G+ SD 
Sbjct: 209  VEADEKKGIVQASVTSSTHERRSKTYVITKNDKIYLKHNSITEEIPIVIVLKACGVVSDL 268

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            E++Q+V G D  Y  +   ++EE + L+IYTQ++ALE++  KVK          +EG   
Sbjct: 269  EIMQLVCGNDSSYQDIFAVNLEEASRLNIYTQQQALEFIGTKVKTMRRQKLSVLQEG--I 326

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V   +FR K  Y+A+M RR+V A+ N   +DD+DYVGNKRLEL+GQL+
Sbjct: 327  EAIATTVVAHLTVEALDFREKALYMAMMTRRVVMAIQNPKMVDDRDYVGNKRLELAGQLI 386

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   S+ + T+D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ +
Sbjct: 387  SLLFEDLFKKFNSDFKATIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSL 446

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 447  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPE 506

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    LH   +F V  NG ++
Sbjct: 507  GEACGLVKNLALMTHITTDDEEEPIKRLCYILGVEDVSLIDSASLHL--NFGVYLNGTLI 564

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R P  F    R LRR GKI EF+S++ N  Q+ V+IA+DGGR+CRPL+I  KG S +
Sbjct: 565  GTTRFPIKFVSQFRHLRRTGKISEFISIYANSHQKAVHIATDGGRICRPLIIVTKGKSHV 624

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H++ LL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D    +TH+EIEPFTILG
Sbjct: 625  TADHLRRLLNGELVFDDFLKLGLVEYLDVNEENDSFIALYEKDIESASTHLEIEPFTILG 684

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TIE
Sbjct: 685  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE 744

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC   +K T + ++Y N T
Sbjct: 745  LIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHT 804

Query: 795  SDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             D I  +R D  G       +  H       L  DGL   G  ++   +YINK  P    
Sbjct: 805  QDIIGGMRVDENGE-----PIWQHK-----ALGADGLGEVGMKVESGQIYINKSVPTNQS 854

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
              + +   Q  ++YR     Y+ P  E   +D+V +    N    IK L+R  RRPELGD
Sbjct: 855  NDMTTQAQQ--AQYRETPVIYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGD 910

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  
Sbjct: 911  KFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLN 970

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGITG  LQAYIF GPIYYQ
Sbjct: 971  GSLEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQ 1025

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+
Sbjct: 1026 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMI 1085

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VC  CGL+GY      +G C+TCK+ +NI  M +PYA KLL QEL SMNI P
Sbjct: 1086 SSDAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAP 1139

Query: 1153 RLKLAE 1158
            RL++ +
Sbjct: 1140 RLRMED 1145


>gi|321261728|ref|XP_003195583.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
 gi|317462057|gb|ADV23796.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
          Length = 1129

 Score = 1291 bits (3342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1147 (55%), Positives = 828/1147 (72%), Gaps = 48/1147 (4%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKD 84
            VK+V DK+QLLP FLKV+GLVKQHLDSFNYFVN  I+ I+ AN  ++S I+P  ++R+ D
Sbjct: 18   VKTVEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKYYIRYTD 77

Query: 85   VRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
            +R+G+P+    + V+  L+P  CRL+D TY+API V++EY+     E+   ++  V IG 
Sbjct: 78   IRVGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYM----GEEKRSKQRGVQIGM 133

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +P+MLRS  C L GK+EAELAR+GECP+DPGGYF++KGTEKV+L+QEQLSKNR+++  DK
Sbjct: 134  LPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVVKGTEKVILVQEQLSKNRILVMKDK 193

Query: 204  KGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
            K  + A VTSST     KT +  +  ++YL  N F + IPI++ +KAMG+ +D+E++Q++
Sbjct: 194  KDEVMAEVTSSTHDRVVKTYVVSKANRLYLRHNSFKEFIPIVIALKAMGLTADKEILQLI 253

Query: 264  -GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS----PPNDREGR 314
             G D RY      S+EE A    +T+ +ALE++  +V     +   GS     P+D   +
Sbjct: 254  CGSDERYQEAFGVSLEEAAKEKTFTRRQALEWIGARVSPNQAKDDSGSNQKLTPSDIAQQ 313

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A + +    L +VPV N NFRPKC Y+A M RR++ AM++   +DD+DYVGNKRLEL+GQ
Sbjct: 314  ALAAM---VLGHVPVRNMNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQ 370

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNF 432
            L+SLLFED FKT  SE++K +D IL KP+R+  FD    I +  D IT    R++STGN+
Sbjct: 371  LLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNW 430

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRF + R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 431  SLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 490

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD  E PL+ + + LGVED+ L++G EL+ P   +V  NG 
Sbjct: 491  PEGEACGLVKNLALMTHITTDVPEAPLVKMAFMLGVEDISLVTGNELYRPGVHMVQVNGT 550

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G     K F    RKLRRAG++ EFVS+F+N   + +YIASDGGR+CRP++I +KG S
Sbjct: 551  LIGVTNMAKKFVRQFRKLRRAGRMSEFVSIFINHHHKIIYIASDGGRICRPMIIVEKGRS 610

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            R+   H++ L +G  +FD FLR GL+EYLDVNEEN+A IA YE +    TTH+EIEPFTI
Sbjct: 611  RVTTEHVRLLKEGKVTFDHFLRAGLVEYLDVNEENDAFIACYENEIEEGTTHLEIEPFTI 670

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+ YPQ+P++ T+T
Sbjct: 671  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKT 730

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+GY+KL AGQNATVAVMSYSGYDIEDA+++N++S+DRGFGRC V+KK T   + + N
Sbjct: 731  IELIGYNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHN 790

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             + +R   PD   P  +    V  +         DG+ APG  I   DV I++E+P++TR
Sbjct: 791  GSHERTAYPDPP-PRPDAYTFVDKA---------DGMTAPGATINQYDVMIHRETPIDTR 840

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            G      G     Y+    T+K P  E  +VD+V L   ++G L IK L R TRRPELGD
Sbjct: 841  GG-----GADTQLYKPMPVTHKTP--EPILVDKVMLTEGEDGAL-IKILTRQTRRPELGD 892

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IV Q D PF+++GI PD+IMNPHGFPSRMTVGKMIELL GKAGV  
Sbjct: 893  KFSSRHGQKGVCGLIVPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKAGVIA 952

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+  YG+AFG        V  +S+ L+ +GFSY GKDM+ SGITG P++AY++ GPIYYQ
Sbjct: 953  GKLQYGTAFG-----GSKVVDMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQ 1007

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV+DKMHAR +GPR  LTRQPTEGR+++GGLR+GEMERDCLI YGA+ L+ ERLM+
Sbjct: 1008 KLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMI 1067

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FE QVC  CG+LGY N       C  CK+G+ +  + +PYA KLLIQEL  MNI+P
Sbjct: 1068 SSDAFETQVCESCGMLGYNNW------CPKCKSGNGVVGLTIPYAAKLLIQELMGMNIMP 1121

Query: 1153 RLKLAEA 1159
            +L L + 
Sbjct: 1122 KLCLEDT 1128


>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Sporisorium
            reilianum SRZ2]
          Length = 1170

 Score = 1290 bits (3339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1159 (54%), Positives = 829/1159 (71%), Gaps = 49/1159 (4%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+K+V DK++L+P FL+V+GLVKQH+DS+NYFV+  ++ I++AN++I S IDP  +L
Sbjct: 40   LMDPIKTVEDKWELVPAFLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYL 99

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G+P     D +   + PH CRL D+TY+A I VNIEY +G       + + +V
Sbjct: 100  KYTDITVGEPRRYDGDALQRPITPHECRLRDITYSAHIFVNIEYTRGG----KIIRRKNV 155

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGRIP+MLRS +CVL  K E ELA++ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 156  AIGRIPVMLRSNKCVLANKSEKELAKMSECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 215

Query: 200  DTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
            + D KKG ++ASVTSST   KSK+ +  + GK+YL  N   + IPI V  KAMG+++D+E
Sbjct: 216  EADTKKGTVSASVTSSTHERKSKSYVLTKHGKIYLKHNSLHEDIPIAVAFKAMGIQADRE 275

Query: 259  VVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE---GR 314
            ++Q+V G D  +  L   ++EE A L IYT+++AL+Y+  + K S    P + R      
Sbjct: 276  ILQLVAGHDDIHKELFAINLEEAARLGIYTRKQALDYIGARAKASR--KPLSMRRPLAEE 333

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  +L  V +A+VPV   NFRPK  Y+A M+RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 334  ALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDYVGNKRLELAGQ 393

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLSTGNF 432
            L++LLFEDLFK   S+++  +D +L KP+R+  FD  +QF    D IT G  R +STGN+
Sbjct: 394  LLALLFEDLFKKFNSDLKINIDKVLKKPNRTVEFDAFNQFHFNGDYITAGFVRAISTGNW 453

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 454  SLKRFKMERAGITHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 513

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLAL TH+TTD EE P+  + + LGVED+ LL+G EL+ P+S++V  NG 
Sbjct: 514  PEGEACGLVKNLALTTHITTDVEEEPIARIAFTLGVEDIHLLTGAELYRPDSYVVYLNGN 573

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--G 610
            +LG  R P+ F    R+LRRAG+I EFVSV+ N   + VYIASDGGR+CRPL+I D   G
Sbjct: 574  VLGVTRFPQRFVHQFRRLRRAGRISEFVSVYTNNHHQTVYIASDGGRICRPLIIVDAVTG 633

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEP 669
              R+ E HM++L  G R FDDFL  GLIEY+DVNEEN+A IA+YE +  P  TTH+EIEP
Sbjct: 634  QPRVTESHMRQLKSGARRFDDFLSNGLIEYVDVNEENDANIAMYEREIKPQYTTHLEIEP 693

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LG +AGLIPYPHHNQSPRNTY CAM KQA G I  NQL R+D+LLYL++YPQ+P++ 
Sbjct: 694  FTLLGAVAGLIPYPHHNQSPRNTYHCAMAKQAQGFIGHNQLVRIDTLLYLMLYPQQPMVK 753

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            +RT+ELVGYDKL  G NA +AVMS+SGYDIEDA+V+NK+SLDRGFGR   +KK + + +K
Sbjct: 754  SRTVELVGYDKLPGGTNAMLAVMSFSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRK 813

Query: 790  YANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            Y N T DR+      D TG   +R            IL+ DG+A  GE ++  DVY+NK+
Sbjct: 814  YPNGTHDRLADAPVDDSTGKRQKRYD----------ILEADGIAGVGERVEQGDVYVNKQ 863

Query: 847  SPL----ETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            +P+     +  +IM  +        Y+SA  +YK P   +  VD+V +    +    IK 
Sbjct: 864  TPVNANDNSSAAIMIGASNAAASVAYKSAPLSYKPP--VSGYVDQVLITDTDSDQTLIKA 921

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            LIR TRRPELGDKFSSRHGQKGV G IVQQED PF++ GI PD+IMNPHGFPSRMTVGKM
Sbjct: 922  LIRQTRRPELGDKFSSRHGQKGVIGLIVQQEDMPFTDEGINPDIIMNPHGFPSRMTVGKM 981

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IELL GKAGV  G   YG+AFG        V+ +S  LV+HG++Y GK+ + SGITG PL
Sbjct: 982  IELLSGKAGVVTGTLQYGTAFG-----GSKVDDMSALLVEHGYNYAGKETLTSGITGQPL 1036

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            + Y++ GPIYYQ+LKHMV DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI Y
Sbjct: 1037 ECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY 1096

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GA+ L+ ERLM+SSD F V  C+ CGL+GY       G C  C +  ++  + +PY  KL
Sbjct: 1097 GATQLLLERLMISSDAFTVHACQRCGLMGY------NGFCPYCSSSKHVVQLTIPYGTKL 1150

Query: 1141 LIQELQSMNIVPRLKLAEA 1159
            ++QEL +M +VPRL L +A
Sbjct: 1151 MLQELMAMQVVPRLVLEDA 1169


>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
            7435]
          Length = 1158

 Score = 1290 bits (3338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1151 (55%), Positives = 831/1151 (72%), Gaps = 37/1151 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + LA P+ +  DK+ LLP FL+V+GLVKQHLDSFNYFV+  ++KI++AN++++S +DP  
Sbjct: 32   KALADPINTAEDKWNLLPAFLQVKGLVKQHLDSFNYFVDKDLKKIIKANEKVLSDVDPEF 91

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN---PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            +L++ D+R+G  S T D    K N   PH CRLSD TY+API V++EY +G    K  M 
Sbjct: 92   YLKYLDIRVGYKS-TEDLQKVKRNMIPPHQCRLSDTTYSAPIYVDVEYTRG---RKIIMH 147

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            + D+ IG++PIMLRS +C+L  KDE+++A L ECPLDPGGYFI+ GTEKV+L+QEQLSKN
Sbjct: 148  R-DLEIGKMPIMLRSNKCILESKDESQMASLCECPLDPGGYFIVNGTEKVILVQEQLSKN 206

Query: 196  RVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            R+I++ D KK  + ASVTSST   KSKT +  +  K+YL  N   +++PI++V+KA G+ 
Sbjct: 207  RIIVEADDKKQIVQASVTSSTHERKSKTYVVTKNNKIYLKHNSISEEVPIVLVLKAAGIV 266

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDRE 312
            SD E++Q+V G D  Y  L   + EE A LDI+TQ  ALEY+  +VK     G+P     
Sbjct: 267  SDLEIMQLVCGDDSTYQDLFTINFEEAAKLDIHTQRDALEYIGKRVKTMRRLGAPKLSIY 326

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
                  + +  +A++ V + NFR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+
Sbjct: 327  QEGVEAIANTIVAHISVEDLNFREKAIYLAIMTRRVVMAMHNPTMIDDRDYVGNKRLELA 386

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTG 430
            GQL+SLLFEDLFK   S+ +  +D IL KP+R+S FD  LS  +  ++IT G+ R +STG
Sbjct: 387  GQLMSLLFEDLFKKFNSDFKANIDKILKKPNRASEFDALLSINVHSNNITTGINRAISTG 446

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  
Sbjct: 447  NWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTS 506

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            DTPEGEACGLVKNLALMTH+TTD+EE P+  +CY LG ED++++    + + ++F V  N
Sbjct: 507  DTPEGEACGLVKNLALMTHITTDDEEEPVRKICYLLGAEDIKIVDSSVISSRSNFGVYLN 566

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G ++G  R P  F    RKLRR+GK+  F+S+++N   + V++A+DGGR+CRPL+I + G
Sbjct: 567  GTMIGVIRYPTVFVTKFRKLRRSGKVSAFISIYINSHHKAVHLAADGGRICRPLIIVENG 626

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPF 670
            +S+++ HH+++L DG   FD FL  GL+EYLDVNEEN++LIALYE D    TTH+EIEPF
Sbjct: 627  VSKVEAHHLQKLKDGEWQFDSFLTNGLVEYLDVNEENDSLIALYEKDIKNYTTHLEIEPF 686

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            T+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL+VYPQ+P++ T
Sbjct: 687  TVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLMVYPQQPMVKT 746

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TIEL+GYDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V +K T + ++Y
Sbjct: 747  KTIELIGYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKNTTLLKRY 806

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
             N T D +        G    Q  H S      L  DGL   G  ++   VY+NK  P+ 
Sbjct: 807  PNHTKDILGGMSVNDQGEPIFQ--HRS------LGPDGLGEVGLPLESGQVYVNKFVPIN 858

Query: 851  TRGSIMSPTGQTDSRYRSARQT---YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            +  SI+  T     R    R+T   Y+GP  E   +D++ +   +N  + +K L+R TRR
Sbjct: 859  SEESIIGQTPDDSQRKEQHRETPMVYRGP--EPSYIDQMMMSLGENDQVLVKALLRQTRR 916

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+ GK
Sbjct: 917  PELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGK 976

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
            AGV  G   YG+ FG        ++ +S+ L+  GFSY+GKD +YSGITG  LQAYIF G
Sbjct: 977  AGVLDGSLQYGTCFG-----GSDLKEMSQILIDKGFSYSGKDQLYSGITGECLQAYIFFG 1031

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            PIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC++AYGAS L+ 
Sbjct: 1032 PIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVVAYGASQLLL 1091

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERLM+SSD FEV VC  CGL+GY       G C TCK+ + I  M +PYA KLL QEL S
Sbjct: 1092 ERLMISSDAFEVDVCNTCGLMGY------NGWCPTCKSSEFIIKMTIPYAAKLLFQELVS 1145

Query: 1148 MNIVPRLKLAE 1158
            MNI PRL+L +
Sbjct: 1146 MNIAPRLELGD 1156


>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
          Length = 1141

 Score = 1288 bits (3334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1149 (55%), Positives = 827/1149 (71%), Gaps = 48/1149 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KLA  + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN+ ++S +DP  
Sbjct: 28   KKLADAINTAEDKWHLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEF 87

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN---PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            +L++ D+R+G+ S      S K++   PH CRL DMTY+API V+IEY +G    ++ + 
Sbjct: 88   YLKYVDIRVGRRSN-----SSKIDMTPPHECRLRDMTYSAPIFVDIEYTRG----RSIVL 138

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
              DV IG++PIMLRS +C+L G  E  +A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKN
Sbjct: 139  HKDVEIGKMPIMLRSNKCILNGASEEVMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKN 198

Query: 196  RVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            R+I++ D KK  + ASVTSST   KSKT +  +  K+YL  N   +++PI++V+KA G+ 
Sbjct: 199  RIIVEADEKKAIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVIVLKACGIV 258

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            SD E++Q+V G D  Y  +   + EE + ++IYTQ++ALEY+  KVK          +EG
Sbjct: 259  SDLEIMQLVCGNDSSYQDIFAINFEEASKMNIYTQQQALEYIGTKVKTIRRQKLTVLQEG 318

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
                 +    +A++ V   +FR K  YVA+M RR++ A+ N   +DD+DYVGNKRLEL+G
Sbjct: 319  --IEAIATTVIAHLTVEALDFREKALYVAMMTRRVIMAIHNPKMVDDRDYVGNKRLELAG 376

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGN 431
            QL+SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN
Sbjct: 377  QLMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALLSINVHSNNITSGLNRAISTGN 436

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  D
Sbjct: 437  WSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSD 496

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD+EE P+ +LCY LGVED+ LL    +H   ++ V  NG
Sbjct: 497  TPEGEACGLVKNLALMTHITTDDEEEPIKNLCYLLGVEDITLLDSASIHL--NYGVYLNG 554

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G  R P  F +  R LRR GK+ EF+S++ N  Q+ V+IA+DGGR+CRPL+I   G 
Sbjct: 555  TIIGTTRFPARFVNQFRLLRRTGKVSEFISIYTNSHQKAVHIATDGGRICRPLIIVRNGK 614

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
            S +   H++ LL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D    TTH+EIEPFT
Sbjct: 615  SMVTAGHLRRLLEGELQFDDFLKLGLVEYLDVNEENDSYIALYEKDIEEGTTHLEIEPFT 674

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ ++
Sbjct: 675  VLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKSK 734

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   KK T I ++Y 
Sbjct: 735  TIELIDYDKLPAGQNATVAVMSYSGYDIEDALVINKSSIDRGFGRCETRKKTTTILKRYP 794

Query: 792  NSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            N T D I  +R D  G    + Q           L  DGL   G  +    +YINK  P 
Sbjct: 795  NHTQDIIGGMRVDENGEPIWQHQS----------LGPDGLGEVGMKVTSGQIYINKSIPT 844

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
                S+++   Q  S+YR A   Y+ P  E   +D+V +    N    IK L+R  RRPE
Sbjct: 845  NASDSVLN---QVQSQYREAPIIYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPE 899

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            LGDKFSSRHGQKGVCG IVQQED PF+++GICPD+IMNPHGFPSRMTVGKM+EL+ GKAG
Sbjct: 900  LGDKFSSRHGQKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMLELVSGKAG 959

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            V  G   YG+ FG        +  +SE LV +GF+Y+GKDM+YSGITG  LQAY+F GPI
Sbjct: 960  VLNGTLEYGTCFG-----GSQLADMSEILVNNGFNYSGKDMLYSGITGECLQAYVFFGPI 1014

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ER
Sbjct: 1015 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLER 1074

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD FEV VC  CGL+GY      +G C++CK+ ++I  M +PYA KLL QEL SMN
Sbjct: 1075 LMLSSDAFEVDVCNKCGLMGY------SGWCTSCKSAEHIIKMTIPYAAKLLFQELLSMN 1128

Query: 1150 IVPRLKLAE 1158
            I PRLKL +
Sbjct: 1129 IAPRLKLED 1137


>gi|58271124|ref|XP_572718.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|134114572|ref|XP_773994.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50256624|gb|EAL19347.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57228977|gb|AAW45411.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1129

 Score = 1288 bits (3333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1147 (55%), Positives = 827/1147 (72%), Gaps = 48/1147 (4%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKD 84
            VK+V DK+QLLP FLKV+GLVKQHLDSFNYFVN  I+ I+ AN  ++S I+P  ++R+ D
Sbjct: 18   VKTVEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKYYIRYTD 77

Query: 85   VRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
            +R+G+P+    + V+  L+P  CRL+D TY+API V++EY+     E+   ++  V IG 
Sbjct: 78   IRVGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYM----GEEKRSKQRGVQIGM 133

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +P+MLRS  C L GK+EAELAR+GECP+DPGGYF++KGTEKV+L+QEQLSKNR+++  DK
Sbjct: 134  LPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVVKGTEKVILVQEQLSKNRILVMKDK 193

Query: 204  KGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
            K  + A VTSST     KT +  +  ++YL  N F + IPI++ +KAMG+ +D+E++Q++
Sbjct: 194  KDEVMAEVTSSTHDRVVKTYVVSKANRLYLRHNSFKEFIPIVIALKAMGLTADKEILQLI 253

Query: 264  -GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS----PPNDREGR 314
             G D RY      S+EE A    +T+ +ALE++  +V     +   GS     P+D   +
Sbjct: 254  CGSDERYQEAFGVSLEEAAKEKTFTRRQALEWIGARVSPNQAKDDSGSNQKLTPSDIAQQ 313

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A + +    L +VPV N NFRPKC Y+A M RR++ AM++   +DD+DYVGNKRLEL+GQ
Sbjct: 314  ALAAM---VLGHVPVRNMNFRPKCIYLATMARRVLMAMIDDHMVDDRDYVGNKRLELAGQ 370

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNF 432
            L+SLLFED FKT  SE++K +D IL KP+R+  FD    I +  D IT    R++STGN+
Sbjct: 371  LLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNW 430

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRF + R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 431  SLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 490

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD  E PL+ + + LGVED+ L++G EL+ P   +V  NG 
Sbjct: 491  PEGEACGLVKNLALMTHITTDVPETPLVKMAFMLGVEDISLVTGNELYRPGVHMVQVNGT 550

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G     K F    RKLRRAG++ EFVS+F+N   + +YIASDGGR+CRP++I +KG S
Sbjct: 551  LIGVTNMAKRFVRQFRKLRRAGRMSEFVSIFINHHHKIIYIASDGGRICRPMIIVEKGRS 610

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            R+   H++ L +G  +FD FLR GL+EYLDVNEEN++ IA YE +    TTH+EIEPFTI
Sbjct: 611  RVTTEHVRLLKEGKVTFDHFLRAGLVEYLDVNEENDSFIACYENEIEEGTTHLEIEPFTI 670

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+ YPQ+P++ T+T
Sbjct: 671  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKT 730

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+GY+KL AGQNATVAVMSYSGYDIEDA+++N++S+DRGFGRC V+KK T   + + N
Sbjct: 731  IELIGYNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHN 790

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             + +R   PD   P  +    V  +         DG+ APG  I   DV I++E+P++TR
Sbjct: 791  GSHERTAYPD-PPPRPDAYTFVDKA---------DGMTAPGATINQYDVMIHRETPVDTR 840

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            G      G     Y+    T+K P  E  +VD+V L   ++G L IK L R TRRPELGD
Sbjct: 841  GG-----GADTQLYKPMPVTHKTP--EPILVDKVMLTEGEDGAL-IKILTRQTRRPELGD 892

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IV Q D PF+++GI PD+IMNPHGFPSRMTVGKMIELL GKAGV  
Sbjct: 893  KFSSRHGQKGVCGLIVPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKAGVVA 952

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+  YG+AFG        V  +S+ L+ +GFSY GKDM+ SGITG P++AY++ GPIYYQ
Sbjct: 953  GKLQYGTAFG-----GSKVVDMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQ 1007

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV+DKMHAR +GPR  LTRQPTEGR+++GGLR+GEMERDCLI YGA+ L+ ERLM+
Sbjct: 1008 KLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMI 1067

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FE QVC  CG+LGY N       C  CK+G  +  + +PYA KLLIQEL  MNI+P
Sbjct: 1068 SSDAFETQVCESCGMLGYNNW------CPKCKSGKGVVGLTIPYAAKLLIQELMGMNIMP 1121

Query: 1153 RLKLAEA 1159
            +L L + 
Sbjct: 1122 KLCLEDT 1128


>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
 gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
          Length = 1144

 Score = 1288 bits (3332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1146 (55%), Positives = 823/1146 (71%), Gaps = 41/1146 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN  I+S +DP  
Sbjct: 30   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEF 89

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+R+G  S T       + PH CRL DMTY+AP+ V+IEY +G    +  +   D
Sbjct: 90   YLKYVDIRVGHRS-TSSSKDYIVPPHECRLRDMTYSAPVYVDIEYTRG----RNIIMHRD 144

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V IGR+PIMLRS +C+L G  E ++A++ ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 145  VEIGRMPIMLRSNKCILNGASEKDMAKINECPLDPGGYFIVNGTEKVILVQEQLSKNRII 204

Query: 199  IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D KK  + ASVTSST   KSKT +  +  K+YL  N   +++PI++V+KA G+ SD 
Sbjct: 205  VEADEKKAIVQASVTSSTHERKSKTYVITKNDKIYLKHNSIAEEVPIVLVLKACGIVSDL 264

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            E++Q+V G D  Y  +   + EE A + IYTQ++ALEY+  KVK          +EG   
Sbjct: 265  EIMQLVCGNDSSYQDIFAVNFEEVAKMKIYTQQQALEYIGSKVKTVRRQKLSTLQEG--I 322

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V   +FR K  Y+AVM RR+V AM N   +DD+DYVGNKRLEL+GQL+
Sbjct: 323  EAIATTVIAHLTVEALDFREKALYIAVMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQLM 382

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   ++ +  +D +L KP+R+  +D  LS  +  ++I+ GL R +STGN+ +
Sbjct: 383  SLLFEDLFKKFNNDFKANIDKVLKKPNRAMEYDALLSINVHSNNISSGLNRAISTGNWSL 442

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 443  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPE 502

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD+EE P+  LC+ LGVE + ++  + LH   ++ V  NG I+
Sbjct: 503  GEACGLVKNLALMTHITTDDEEEPIKKLCFLLGVECINVVDSDSLHL--NYCVYLNGTIV 560

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R P  F    R LRR+GK+ EF+S++ N  Q+ V+IA+DGGR+CRPL+I ++G S +
Sbjct: 561  GVIRFPTKFVSHFRNLRRSGKVSEFISIYTNSHQKAVHIATDGGRICRPLIIVNEGKSLV 620

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D  P  TH+EIEPFT+LG
Sbjct: 621  TAQHLRQLLDGHLQFDDFLKLGLVEYLDVNEENDSFIALYERDLEPRITHLEIEPFTVLG 680

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TIE
Sbjct: 681  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE 740

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   +K T + ++Y N T
Sbjct: 741  LIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKLTTVLKRYPNHT 800

Query: 795  SDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             D +  +R D +G       +  H       L  DGL   G  ++   +Y+NK  P    
Sbjct: 801  QDMVGGMRVDESGE-----PIWQHKP-----LGPDGLGEVGMKVESGQIYVNKSVPTNAS 850

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
             S+++   Q+ ++YR     Y+ P  E   +D+V +   +N    IK L+R  RRPELGD
Sbjct: 851  DSVLT---QSQAQYRETPVVYRAP--EPSHIDQVMMSVSENDQALIKVLLRQNRRPELGD 905

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IV  ED PF+++G+ PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  
Sbjct: 906  KFSSRHGQKGVCGIIVNHEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLN 965

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+ FG        +E++S+ LV HGF+Y+GKDM+YSGITG  LQAYIF GPIYYQ
Sbjct: 966  GSLEYGTCFG-----GSKLENMSQILVNHGFNYSGKDMLYSGITGECLQAYIFFGPIYYQ 1020

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+
Sbjct: 1021 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMI 1080

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VC  CGL+GY      +G C++CK  +N+  M +PYA KLL QEL SMNI P
Sbjct: 1081 SSDAFEVDVCNKCGLMGY------SGWCTSCKGAENVIKMTIPYAAKLLFQELLSMNIAP 1134

Query: 1153 RLKLAE 1158
            RLKL +
Sbjct: 1135 RLKLED 1140


>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
 gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
          Length = 1149

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1150 (56%), Positives = 827/1150 (71%), Gaps = 36/1150 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L   + +  DK+ LLP FLK++GLVKQHLDSFNYFV+  ++KI+ AN  ++S +DP  
Sbjct: 24   KRLTDEINTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILNANSLVLSDVDPDF 83

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            ++++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    +  +   
Sbjct: 84   YVKYIDIRVGHKSTSPPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRG----RKIIRHY 139

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIMLRS +C+L G D+  +A++ ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 140  DLEIGRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVILVQEQLSKNRI 199

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + IPI++V+KA G+ SD
Sbjct: 200  IVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIVLKAAGVTSD 259

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G DP Y  L + + EE A L+++TQ++AL YL  +VK     G+P   +   
Sbjct: 260  LEILQLVCGSDPNYQDLFVVNFEEAAKLEVFTQQQALLYLGKRVKTIRRAGAPKLSQLQE 319

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+GQ
Sbjct: 320  GIEAIATTIIAHLTVVDLQFREKALYMAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 379

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D IL KPSR+S FD  LS  I  ++IT+GL R +STGN+
Sbjct: 380  LMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNW 439

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 440  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 499

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EEGP+  LC  LG E +  L    LH   +F V  NG 
Sbjct: 500  PEGEACGLVKNLALMTHITTDDEEGPIKKLCTALGCESILGLDSATLHVEGNFGVYLNGT 559

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +LG  R P  F    R+LRRAGK+  FVS++ N  Q+ V+IA+DGGR+CRPL+I +   S
Sbjct: 560  LLGATRFPVKFVTDFRRLRRAGKVSAFVSIYTNTHQQAVHIATDGGRICRPLIIVENNKS 619

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--ATPDT--THIEIE 668
            +++ +H+ +LL+G   FDDFL+EGL+EYLDVNEEN++LIALYE D    P+   TH+EIE
Sbjct: 620  KVEANHLAKLLNGEWEFDDFLKEGLVEYLDVNEENDSLIALYEKDIGENPNATVTHLEIE 679

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++
Sbjct: 680  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMV 739

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSSLDRGFGRC VV+K T   +
Sbjct: 740  KTKTIELINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLK 799

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY N + D IL   R     E +   H +      L  DGL   G  I+   V+ NK  P
Sbjct: 800  KYPNHSKD-ILSGMRVDENDEPI-FPHQA------LGPDGLGEVGSKIENGQVFANKCVP 851

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
              +  S +    Q +S +R A   YKGP  E   VD+V +    N    IK L+R TRRP
Sbjct: 852  TNSGDSSLGQPQQVES-HREAPLFYKGP--EPSYVDQVMMSVSDNDQALIKVLLRQTRRP 908

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+ GKA
Sbjct: 909  ELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA 968

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+ FG        +E +S+ LV+ GFSY+GKDM+YSGITG  LQAYIF GP
Sbjct: 969  GVLNGSLEYGTCFG-----GSKLEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGP 1023

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ E
Sbjct: 1024 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1083

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD FEV VC  CGL+GY +       C+TCK+ +NI  M +PYA KLL QEL SM
Sbjct: 1084 RLMISSDAFEVDVCNKCGLMGYNSW------CTTCKSSENIIKMTIPYAAKLLFQELLSM 1137

Query: 1149 NIVPRLKLAE 1158
            NI PRL+L +
Sbjct: 1138 NIAPRLRLGD 1147


>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
 gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
          Length = 1159

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1156 (55%), Positives = 827/1156 (71%), Gaps = 43/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL  P+ +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI+RAN+ ++S +DP  
Sbjct: 29   KKLTDPISTAKDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPQF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G  S +  G  E  + PH CRL D+TY+API V++EY +G    K  M K 
Sbjct: 89   YLKYLDIRVGHKSSSAPGTKEVIMAPHECRLRDLTYSAPIYVDVEYTRG---RKIIMHK- 144

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIMLRS +CVL G DE ++A   ECP+DPGGYFI+ GTEKV+LIQEQLSKNR+
Sbjct: 145  DLEIGRMPIMLRSNKCVLDGIDEHQMAVFEECPIDPGGYFIVNGTEKVILIQEQLSKNRI 204

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KK  + ASVTSST   KSKT +  +  K+YL  N   + +PI+VV+KA G+ SD
Sbjct: 205  IVEADEKKAIVQASVTSSTHERKSKTYVISKNEKIYLKHNSIAEDVPIVVVLKAAGIVSD 264

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G + +Y  L   + EE A L+I+TQ++AL Y+  +VK     G+P   +   
Sbjct: 265  MEILQLVCGANSQYQDLFAINFEEAAKLEIFTQQQALLYIGKRVKTVRRAGAPKLSQLQE 324

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V + NFR K  Y+A+M R+++  M N   +DD+DYVGNKRLEL+GQ
Sbjct: 325  GIEAIATTVIAHLTVSDLNFREKALYIAIMARKVLMTMHNPSMVDDRDYVGNKRLELAGQ 384

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   ++ +  +D IL KPSR+S FD  LS  I  ++IT+G+ R +STGN+
Sbjct: 385  LMSLLFEDLFKKFNTDFKANIDKILKKPSRTSEFDALLSINIHSNNITMGMNRAISTGNW 444

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 445  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDT 504

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LC+ LG ED+  +    ++   ++ V  NG 
Sbjct: 505  PEGEACGLVKNLALMTHITTDDEEEPIKRLCFILGCEDIYSIDSATIYTEGNYGVFLNGT 564

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--G 610
            ++G  R P  F    R+LRR+GK+ EF+S+F N  Q  V+IA+DGGRVCRPL+I D+  G
Sbjct: 565  MVGTTRFPVKFVKDFRRLRRSGKVSEFISIFTNSHQAAVHIATDGGRVCRPLIIVDEVTG 624

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT----THIE 666
              R++ HH+K+LL G   FDDFL+ GL+EYLDVNEEN++LIALYE D   +     TH+E
Sbjct: 625  QPRVEAHHLKKLLSGDWVFDDFLKYGLVEYLDVNEENDSLIALYEKDMAENPHLRFTHLE 684

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P
Sbjct: 685  IEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQP 744

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ ++TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC VV+K T +
Sbjct: 745  MVKSKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVRKNTIV 804

Query: 787  NQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
             ++Y N T D +  +R D  G       +  H+      L  DGL   G  I+   VY N
Sbjct: 805  LKRYPNHTKDIVAGMRVDENGD-----PIFAHN-----ALGPDGLGEVGMRIENGQVYAN 854

Query: 845  KESPLETRGSIMSPTGQTDS--RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            K+ P     S++    Q  S   +R     Y+GP  E   VD+V +    N    IK L+
Sbjct: 855  KQVPTNAGESVLGDHNQPQSAESHRETPAYYRGP--EPSYVDQVMMSVSDNDQALIKVLL 912

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPELGDKFSSRHGQKGVCG IVQ ED PF++ GI PD+IMNPHGFPSRMTVGKMIE
Sbjct: 913  RQTRRPELGDKFSSRHGQKGVCGIIVQHEDMPFNDMGISPDIIMNPHGFPSRMTVGKMIE 972

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+ GKAGV  G   YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGITG  LQA
Sbjct: 973  LISGKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDKGFNYSGKDMLYSGITGECLQA 1027

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            YIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGA
Sbjct: 1028 YIFFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGA 1087

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERLM+SSD FEV VC  CGL+GY      +  CSTCK+ +++  M +PYA KLL 
Sbjct: 1088 SQLLLERLMISSDAFEVDVCNNCGLMGY------SSWCSTCKSSEHVIKMTIPYAAKLLF 1141

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL SMNI PRLKL +
Sbjct: 1142 QELLSMNIAPRLKLGD 1157


>gi|452820803|gb|EME27841.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1158

 Score = 1285 bits (3326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1154 (54%), Positives = 823/1154 (71%), Gaps = 30/1154 (2%)

Query: 11   KDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI 70
            + E+L  +++L  P+KS+ +K+ L+P FLK+RGLVKQH++SFN+ +   + KIV AND++
Sbjct: 25   EKEKLDKEEQLRKPIKSIAEKWLLIPAFLKLRGLVKQHIESFNFLIEKELSKIVAANDKV 84

Query: 71   VSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
                D S +LR+  +R+G PS+  D V  K+ P  CRL D+TYAAPI V++ Y +G    
Sbjct: 85   TCDADQSFYLRYLGIRVGTPSIEEDLVISKVTPQECRLRDLTYAAPIYVDVRYTRG---- 140

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            K  + + DV IGRIPIMLRS  C+L GK + +LA LGECPLDPGGYFII+GTE+V+LIQE
Sbjct: 141  KEVLIRKDVAIGRIPIMLRSSHCILTGKKDGQLASLGECPLDPGGYFIIRGTERVILIQE 200

Query: 191  QLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            QLSKNR+II+ DKKGN  A+VTSST   KS+T +  +   +YL  N  V  IPI +V KA
Sbjct: 201  QLSKNRIIIEEDKKGNYCATVTSSTHERKSRTSLVYKSNNIYLRHNSLVDDIPIWIVFKA 260

Query: 251  MGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFG 305
            + +ESDQE+VQ++G    + R    LL   +EC +  +  + +ALEY+  +V+  R  + 
Sbjct: 261  LEVESDQEIVQLIGLIEEEYRSYYFLLNHKKECISRHVQNRNEALEYIGSRVRLFRKGYS 320

Query: 306  SPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
               +  E  A  +L  V L+++P + +NFR K  Y+A M+RR++    N   +DDKDY G
Sbjct: 321  FRRSTIE-EAQEVLAGVILSHIPTYQHNFRNKSIYLAFMVRRLLTVAENLTTVDDKDYYG 379

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLER 425
            NKRLEL+GQL+SLLFEDLFK   +++++  D++LSKP+R+++FD+ + +  D+I+VGLE 
Sbjct: 380  NKRLELAGQLLSLLFEDLFKKFNADLKRHADMVLSKPNRAAQFDIVKCMRPDTISVGLEN 439

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             + TGN+ VKRF+MHR G+TQVL+RLS+I  LG MTR++ QFEK+RK+SGPR+LQ SQWG
Sbjct: 440  AIGTGNWTVKRFRMHRAGITQVLSRLSYIAALGMMTRITSQFEKTRKISGPRSLQGSQWG 499

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            +LCP DTPEGE+CGLVKNLAL  H+TTD EE PLI LCY LGVED  L SG+EL+NP+ F
Sbjct: 500  LLCPSDTPEGESCGLVKNLALTAHITTDAEEEPLIRLCYILGVEDATLFSGDELNNPSHF 559

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             +  NG  LG HR    FA++ R LRR G IGEFVS+FVNE +  VY++ D GR+CRPL+
Sbjct: 560  RIFLNGKFLGIHRNASYFANIFRFLRRKGAIGEFVSIFVNEAENVVYLSCDSGRICRPLI 619

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP-DTTH 664
            I + G  ++ + ++++L      F D +++GL+EYLDVNEENNALIAL E +  P  TTH
Sbjct: 620  IVENGKPKVTQQYIEQLERNQLEFTDLVQQGLVEYLDVNEENNALIALSEENIEPCSTTH 679

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EI P  ILGV AG+IPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R D+LLYLL Y Q
Sbjct: 680  LEISPLAILGVCAGVIPYPHHNQSPRNTYQCAMGKQAIGFIGYNQHLRTDTLLYLLTYAQ 739

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL+ T+TI  + YD+L  GQNA VAVMSYSGYDIEDA+++N+SSLDRG+GRC VV+K+ 
Sbjct: 740  KPLVNTKTISFIKYDELPGGQNAIVAVMSYSGYDIEDALILNRSSLDRGYGRCCVVRKHA 799

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               ++Y N T DR+ RP      +ER      +++    L++DGL   G  + P   Y+ 
Sbjct: 800  FGLRRYPNGTCDRVCRPPSFSESSER------THMKFACLEEDGLPKVGGRLSPGQAYVY 853

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            KE+P++T  ++ S        YR     YKGPD    V+DRV + S+ +    IK +IR 
Sbjct: 854  KETPMDTMTTMTSQQSIQQVGYRPQPFFYKGPD--DAVIDRVVVTSNASTHALIKVMIRE 911

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TR PE+GDKFSSRHGQKGVCG IV QED PF+E+GICPD+IMNPHGFPSRMTVGK++EL+
Sbjct: 912  TRTPEVGDKFSSRHGQKGVCGLIVPQEDMPFNEQGICPDIIMNPHGFPSRMTVGKLLELM 971

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAGV  G F  G+AF       D +E  +  LV+HGFSY GKD +YSG+TG PLQAY+
Sbjct: 972  AGKAGVLSGEFKNGTAFD-----GDPLEDCASLLVQHGFSYTGKDFLYSGMTGEPLQAYV 1026

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            FMGPIYYQKLKHMV DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASM
Sbjct: 1027 FMGPIYYQKLKHMVKDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASM 1086

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            LI ERLM SSD F   VCR CGL+      +    C TC N   I  +K+PYACKLL QE
Sbjct: 1087 LIMERLMHSSDAFTAHVCRQCGLI------VSKDWCPTCGNSLQIRPLKIPYACKLLFQE 1140

Query: 1145 LQSMNIVPRLKLAE 1158
            LQSMNI P++ L E
Sbjct: 1141 LQSMNIWPKILLEE 1154


>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1159

 Score = 1285 bits (3324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/1155 (55%), Positives = 824/1155 (71%), Gaps = 42/1155 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDS+NYFV+  ++KI++AN+ ++S +DP  
Sbjct: 30   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDPEF 89

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            ++++ D+R+G  S    GV E  L PH CRL D+TY+API V++EY +G    +  +  N
Sbjct: 90   YVKYLDIRVGHKSTAKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRG----RKIIRHN 145

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+P+MLRS +C+L G  EA +A++ ECPLDPGGYF++ GTEKV+L+QEQLSKNR+
Sbjct: 146  DLEIGRMPVMLRSNKCMLEGMSEASMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRI 205

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KK  + ASVTSST   KSKT +  +  K+YL  N   + IPI++++KA G+ SD
Sbjct: 206  IVEADEKKAIVQASVTSSTHERKSKTYVITKNDKIYLKHNSVSEDIPIVIILKAAGITSD 265

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G DP Y  L + + EE A L+++TQ++AL Y+  +VK     G+P   +   
Sbjct: 266  LEILQLVCGTDPNYQDLFVVNFEEAAKLEVFTQQQALLYVGKRVKTIRRAGAPKLSQLQE 325

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+A M RR+V AM N   +DD+DYVGNKRLEL+GQ
Sbjct: 326  GIEAIATTIVAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 385

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D +L KPSR+S FD  LS  I  ++IT+GL R +STGN+
Sbjct: 386  LMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNW 445

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 446  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 505

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LC  LG E +  L    LH+  +F V  NG 
Sbjct: 506  PEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCEPIYALDSATLHSEGNFGVYLNGT 565

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G  R P+ F +  R LRR GK+  F+S++ N   + V+IA+DGGR+CRPL+I + G S
Sbjct: 566  LIGTTRFPQKFVNDFRHLRRNGKVSAFISIYTNTHHQAVHIATDGGRICRPLIIVENGES 625

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT----THIEIE 668
            ++   H+ +LL+   SFDDFL+ GL+EYLDVNEEN++LIALYE D   ++    TH+EIE
Sbjct: 626  KVTAEHLAKLLNQEWSFDDFLKHGLVEYLDVNEENDSLIALYEEDINANSSTTVTHMEIE 685

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++
Sbjct: 686  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMV 745

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSSLDRGFGRC VV+K T   +
Sbjct: 746  KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLK 805

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLL--LILDDDGLAAPGEIIKPNDVYINKE 846
            KY N T D +            M+V  ++N +     L  DGL   G  I    V+ NK 
Sbjct: 806  KYPNHTQDIL----------SGMRVDENNNPIFPHQALGPDGLGEVGSRIHNGQVFANKC 855

Query: 847  SPLETRGSIMSPTGQTD---SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             P  +  S +    Q D    R+R A   YKGP  E   +D+V +    N    IK L+R
Sbjct: 856  VPTNSGESALGGPQQDDRQMDRHREAPAFYKGP--EPSYIDQVMMSVSDNDQALIKVLLR 913

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL
Sbjct: 914  QTRRPELGDKFSSRHGQKGVCGIIVQQEDMPFNDYGISPDIIMNPHGFPSRMTVGKMIEL 973

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G   YG+ FG        +E +S+ LV+ GFSY+GKDM+ SGITG  LQAY
Sbjct: 974  ISGKAGVLNGSLEYGTCFG-----GSKLEDMSKILVEKGFSYSGKDMLQSGITGECLQAY 1028

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS
Sbjct: 1029 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1088

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD FEV VC  CGL+GY N       C+TC++ +N+  M +PYA KLL Q
Sbjct: 1089 QLLLERLMISSDAFEVDVCNKCGLMGYNNW------CTTCQSSENVIKMTIPYAAKLLFQ 1142

Query: 1144 ELQSMNIVPRLKLAE 1158
            EL SMNI PRL+L +
Sbjct: 1143 ELLSMNIAPRLRLGD 1157


>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
 gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
          Length = 1155

 Score = 1284 bits (3323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1154 (56%), Positives = 821/1154 (71%), Gaps = 43/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI+RAN+ ++S +DP  
Sbjct: 29   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    K  M K 
Sbjct: 89   YLKYLDIRVGHKSSSAPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRG---RKIIMHK- 144

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+P+MLRS +C+L G ++ ++A+  ECPLDPGGYF++ GTEKV+L+QEQLSKNR+
Sbjct: 145  DLEIGRMPVMLRSNKCILDGINDKQMAKFDECPLDPGGYFVVNGTEKVILVQEQLSKNRI 204

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + IPI++V+KA G+ SD
Sbjct: 205  IVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIVLKAAGITSD 264

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK---RSTFGSPPNDRE 312
             E++Q+V G DP+Y  L + + EE A L+++TQ++AL Y+  +VK   R+        +E
Sbjct: 265  LEILQLVCGSDPQYQDLFVVNFEEAAKLEVFTQQQALNYVGKRVKTIRRAGAAKLSVLQE 324

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
            G     +    +A++ V +  FR K  Y+A M RR+V  M N   +DD+DYVGNKRLEL+
Sbjct: 325  G--IEAIATTVIAHITVADLQFREKALYIATMARRVVMTMHNPKMVDDRDYVGNKRLELA 382

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTG 430
            GQL+SLLFEDLFK   S+ +  +D IL KPSR+S FD  LS  I  ++IT+GL R +STG
Sbjct: 383  GQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINIHSNNITMGLNRAISTG 442

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  
Sbjct: 443  NWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTS 502

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            DTPEGEACGLVKNLALMTH+TTD+EE P+  LCY LG E++  +    LH+  +F +  N
Sbjct: 503  DTPEGEACGLVKNLALMTHITTDDEEAPIRKLCYVLGCENILGIDSATLHSQGNFGIYLN 562

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G ++G  R P  F    R+LRR GKI EFVS++ N  Q  V+IA+DGGR+CRPL+I    
Sbjct: 563  GTLIGTSRFPSKFVTDFRRLRRTGKISEFVSIYTNTHQTAVHIATDGGRICRPLIIVKNN 622

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD--TTHIEIE 668
               +K  H+ +L  G  +FDDFL  GL+EYLDVNEEN++LIALYE D  P    TH+EIE
Sbjct: 623  EPMVKAEHLLKLRQGEWAFDDFLSHGLVEYLDVNEENDSLIALYEKDLDPSQPVTHLEIE 682

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++
Sbjct: 683  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMV 742

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC VV+K T   +
Sbjct: 743  KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVRKNTIQLK 802

Query: 789  KYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            +Y N T D +  +R D  G       +  H       L  DGL   G  ++   VY NK 
Sbjct: 803  RYPNHTKDIVSGMRVDEDGE-----PIFPHK-----ALGPDGLGEIGARVENGQVYANKF 852

Query: 847  SPLETRGSIMSPTGQT--DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
             P     S++    Q      +R A   YKGP  E   VD+V +    N    IK L+R 
Sbjct: 853  VPTNAGESVLGHNEQMAGAESHREAAAYYKGP--EPSYVDQVMMSVSDNDQALIKVLLRQ 910

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+
Sbjct: 911  TRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELI 970

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAGV  G   YG+ FG        +E +S+ LV+ GFSY+GKDM+YSGITG  LQAYI
Sbjct: 971  SGKAGVLNGSLEYGTCFG-----GSKLEDMSKILVEKGFSYSGKDMLYSGITGECLQAYI 1025

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS 
Sbjct: 1026 FFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQ 1085

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD FEV VC  CGL+GY +       C+TCK+ +++  M +PYA KLL QE
Sbjct: 1086 LLLERLMISSDAFEVDVCNKCGLMGYNSW------CTTCKSFEHVIKMTIPYAAKLLFQE 1139

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMNI PRLKL +
Sbjct: 1140 LLSMNIAPRLKLGD 1153


>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1139

 Score = 1284 bits (3322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1147 (56%), Positives = 819/1147 (71%), Gaps = 43/1147 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   V +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN  I+S +DP  
Sbjct: 25   KKLTDAVSTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEF 84

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+RIGQ S +     + L P H CRL DMTY+API V+IEY +G    +  +   
Sbjct: 85   YLKYVDIRIGQRSSS--SSKDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHK 138

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            DV IGR+PIMLRS +C+L G D++ +A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 139  DVEIGRMPIMLRSNKCILNGADDSMMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 198

Query: 198  IIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D+K  I  ASVTSST   KSKT +  + GK+YL  N   +++PI +V+KA G+ SD
Sbjct: 199  IVEADEKKEIVQASVTSSTHERKSKTYVVTKNGKIYLKHNSIAEEVPIAIVLKACGIISD 258

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
             E++Q+V G D  Y  +   ++EE A  +IYTQ +ALEY+ GKVK          +EG  
Sbjct: 259  LEIMQLVCGNDSSYQDIFAVNLEEAAKYNIYTQRQALEYIGGKVKTIRRQKLSILQEG-- 316

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               +    +A++ V   +FR K  YVA+M RR+V AM N   +DD+DYVGNKRLEL+GQL
Sbjct: 317  IEAIATTVIAHLTVEALDFREKALYVAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQL 376

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
            +SLLFEDLFK   S+ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ 
Sbjct: 377  ISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWS 436

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTP
Sbjct: 437  LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTP 496

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD+EE P+ +LC+ LGVE++ L+    LH   ++ V  NG +
Sbjct: 497  EGEACGLVKNLALMTHITTDDEEEPIKNLCFVLGVENICLVDSATLHL--NYTVHLNGTL 554

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G  R P  F    R LRR GK+ EF+S++ N  QR V+IA+DGGR+CRPL+I   G S 
Sbjct: 555  IGTIRFPARFVSQFRHLRRTGKVSEFISIYTNSHQRAVHIATDGGRICRPLIIVTAGKSH 614

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +   H+KELL+G   FDDFL+ GL+EYLDVNEEN++ IALYE D   + TH+EIEPFT+L
Sbjct: 615  VNAEHLKELLEGKLVFDDFLKLGLVEYLDVNEENDSFIALYEKDINENVTHMEIEPFTVL 674

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TI
Sbjct: 675  GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTI 734

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   +K T + +KY N 
Sbjct: 735  ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKKYPNH 794

Query: 794  TSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            T D I  +R D  G       +  H       L  DGL   G  +    +YINK  P  +
Sbjct: 795  TQDIIGGMRVDENGK-----PIWQHEP-----LGPDGLGEVGVQVTSGQIYINKSVPTNS 844

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
               +++    T ++Y+     Y+ P  E   +D+V +    N    IK L+R  RRPELG
Sbjct: 845  GEGVLA---NTQAQYKETPVIYRAP--EPSRIDQVMMSVSDNDQALIKVLLRQNRRPELG 899

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCG IV  ED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV 
Sbjct: 900  DKFSSRHGQKGVCGIIVNHEDMPFNDDGISPDIIMNPHGFPSRMTVGKMIELVSGKAGVL 959

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G   YG+ FG        +E +S  LV  GF+Y+GKDM+YSGITG  LQAYIF GPIYY
Sbjct: 960  NGSLEYGTCFG-----GSKLEDMSRILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYY 1014

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM
Sbjct: 1015 QKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM 1074

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSD FEV VC  CGL+GY      +G CSTCK+ ++ + M +PYA KLL QEL SMNI 
Sbjct: 1075 ISSDAFEVDVCDKCGLMGY------SGWCSTCKSAEHNNKMTIPYAAKLLFQELLSMNIA 1128

Query: 1152 PRLKLAE 1158
            PRL+L +
Sbjct: 1129 PRLRLED 1135


>gi|388581064|gb|EIM21375.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1152

 Score = 1283 bits (3319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1151 (54%), Positives = 825/1151 (71%), Gaps = 37/1151 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L   VK+V DK+QLLP FLK RGLVKQH+DS+N+FV+  ++ I++AN+++ S +DP  
Sbjct: 28   KSLTDEVKTVEDKWQLLPAFLKTRGLVKQHIDSYNHFVDVELKNIIKANEKVTSDVDPKF 87

Query: 79   FLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+ +G P     D V + + PH  RL DMTY+API +++EY +G    K  + + 
Sbjct: 88   YLKYTDIHVGNPERQDADSVDKSITPHEARLRDMTYSAPIRISVEYTRG----KQIVRRR 143

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+P+MLRS +C+L GKDE  LAR  ECPLDPGGYF++KGTEKV+L+QEQLSKNR+
Sbjct: 144  GIPIGRLPVMLRSNKCILSGKDEETLARYRECPLDPGGYFVVKGTEKVILVQEQLSKNRM 203

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            II+TD K N+ ASVTSST   KSK+ +  + GK+YL  N     +PI+V +KAMG+ SD+
Sbjct: 204  IIETDPKKNVQASVTSSTHERKSKSYVATKNGKIYLRHNSIGDDVPIVVALKAMGVTSDK 263

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE---- 312
            E++Q+V G D  Y  +   +IEE   + I+T+ +ALE++  + K +     P  ++    
Sbjct: 264  EILQLVAGHDDEYKEVFYINIEEALRMGIHTEMQALEWIGARSKSARRAVGPAHQKRPVW 323

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A   L  + LA+VPV N NFRPK  YVAVM+RR++ AM+++  +DD+DYVGNKRLEL+
Sbjct: 324  EDAIETLSTIVLAHVPVENLNFRPKAIYVAVMVRRVLMAMVDEKMLDDRDYVGNKRLELA 383

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTG 430
            GQL+SLLFEDLFK    +++  +D +L KP+R++ FD    ++   D IT G  R +STG
Sbjct: 384  GQLLSLLFEDLFKKFNHDLKLNIDKVLKKPNRTTEFDAYTQLLYGGDHITSGFVRAISTG 443

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP 
Sbjct: 444  NWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS 503

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            DTPEGEACGLVKNLALMTH+TTD EE P++++CY LGVED+ LL+G EL+  ++++V  N
Sbjct: 504  DTPEGEACGLVKNLALMTHITTDVEEEPIVNICYMLGVEDVCLLTGTELYRRDTYIVSLN 563

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G ++G  R P  F    RKLRR G I EFVSV++N     V I+SDGGR+CRP++I +  
Sbjct: 564  GNLIGVTRHPLKFVTQFRKLRRNGFINEFVSVYINHHHNSVNISSDGGRICRPMIIVENS 623

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPF 670
             S++   H+K L  G   FD FL +GL+EYLDVNEEN+A IA+ E D T  +TH+EIEPF
Sbjct: 624  FSKVTSEHIKMLKAGKIDFDAFLTQGLVEYLDVNEENDAYIAISENDITETSTHLEIEPF 683

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            T+LG  AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYPQ+P++ T
Sbjct: 684  TLLGACAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKT 743

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TIEL+GYDKL AGQNA VAVMSYSGYDIEDA+++NK+SLDRGFGRC V++KY+ + +KY
Sbjct: 744  KTIELIGYDKLPAGQNAMVAVMSYSGYDIEDALILNKASLDRGFGRCQVMRKYSTMIRKY 803

Query: 791  ANSTSDRILRPDRTGPGA--ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
             N T DR+        G   ++ Q           L+ DG+A  GE +  NDV +NK+SP
Sbjct: 804  PNGTHDRLADAPIGLDGVIPKKYQA----------LEPDGIAGAGERVDTNDVIVNKQSP 853

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                 + ++P     S Y++A  +YK P      VD+V +   ++    +K L+R TRRP
Sbjct: 854  SNALDNSINPGQADSSTYKNAPMSYKSP--VPGFVDQVLITDTESEQTLVKALLRQTRRP 911

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG IV Q D PF++RGI PD+IMNPHGFPSRMTVGKMIELL GKA
Sbjct: 912  ELGDKFSSRHGQKGVCGLIVPQADMPFNDRGITPDVIMNPHGFPSRMTVGKMIELLSGKA 971

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+AFG        V+ +S+ L+ +G+SY GK+ + SGITG     Y ++GP
Sbjct: 972  GVIRGTLEYGTAFG-----GSKVDDMSQVLIDNGYSYAGKETMTSGITGECHTFYTYLGP 1026

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERD L+ YGA+ L+ E
Sbjct: 1027 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDALLGYGAAHLVRE 1086

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD F V VC  CG +GY         C  CK+  NIS++++PYA KLL QEL +M
Sbjct: 1087 RLMLSSDLFHVDVCNDCGTMGYNT------FCPMCKSQKNISNIQIPYAAKLLFQELLAM 1140

Query: 1149 NIVPRLKLAEA 1159
            NI P++ L +A
Sbjct: 1141 NIYPKISLEDA 1151


>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1141

 Score = 1283 bits (3319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1147 (55%), Positives = 823/1147 (71%), Gaps = 42/1147 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN+ ++S +DP  
Sbjct: 28   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEF 87

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+R+GQ S +     + L PH CRL DMTY+API V+IEY +G    +  +   D
Sbjct: 88   YLKYVDIRVGQRSNS--SRIDMLPPHECRLRDMTYSAPIYVDIEYTRG----RLIVLHKD 141

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V IG++PIMLRS +C+L G  E  +A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 142  VEIGKMPIMLRSNKCILNGASEETMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 201

Query: 199  IDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D+K +I  ASVTSST   KSKT +  +  K+YL  N   +++PI++V+KA G+ SD 
Sbjct: 202  VEADEKKSIVQASVTSSTHERKSKTYVVTKNEKIYLKHNSISEEVPIVIVLKACGVVSDL 261

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            E++Q+V G +  Y  +   + EE + ++IYTQ++ALEY+  KVK          +EG   
Sbjct: 262  EIMQLVCGNNSSYQDIFAINFEEASKMNIYTQQQALEYIGTKVKTIRRQKLTILQEG--I 319

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V   +FR K  Y+A+M RR+V A+ N   +DD+DYVGNKRLEL+GQL+
Sbjct: 320  EAIATTVIAHLTVEALDFREKALYIAIMTRRVVMAIQNCKMVDDRDYVGNKRLELAGQLM 379

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ +
Sbjct: 380  SLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALLSINVHSNNITSGLNRAISTGNWSL 439

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 440  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPE 499

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    LH+  ++ V  NG I+
Sbjct: 500  GEACGLVKNLALMTHITTDDEEEPIKRLCYLLGVEDIGLIDSASLHD--NYGVYLNGTII 557

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R P  F    R LRR GKI EF+S++ N  Q  V+I +DGGR+CRPL+I   G S +
Sbjct: 558  GTARYPTKFVHQFRILRRTGKISEFISIYTNIHQNAVHIVTDGGRICRPLIIVKNGKSMV 617

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H+K LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D     TH+EIEPFT+LG
Sbjct: 618  ASSHLKRLLDGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDIHEGITHLEIEPFTVLG 677

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TIE
Sbjct: 678  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE 737

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   KK T I ++Y N T
Sbjct: 738  LIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRKKTTTILKRYPNHT 797

Query: 795  SDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             D I  +R D  G       +  H +     L  DGL   G  ++   +YINK  P    
Sbjct: 798  QDIIGGMRVDENGE-----PIWQHKS-----LGPDGLGEVGMKVESGQIYINKSVPTNAS 847

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
             S+++   Q+ S+YR A   Y+ P  E   +D+V +    N    IK L+R  RRPELGD
Sbjct: 848  DSVLT---QSQSQYREAPIIYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGD 902

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IVQQED PF+++GICPD+IMNPHGFPSRMTVGKMIEL+ GKAGV  
Sbjct: 903  KFSSRHGQKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKAGVLN 962

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+ FG        +  +SE L+ +GF+Y+GKDM+YSGITG  LQAY+F GPIYYQ
Sbjct: 963  GTLEYGTCFG-----GSKLADMSEILINNGFNYSGKDMLYSGITGECLQAYVFFGPIYYQ 1017

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+
Sbjct: 1018 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLML 1077

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VC  CGL+GY      +G C++CK+ +++  + +PYA KLL QEL SMNI P
Sbjct: 1078 SSDAFEVDVCDKCGLMGY------SGWCTSCKSAEHVIKITIPYAAKLLFQELLSMNIAP 1131

Query: 1153 RLKLAEA 1159
            RL L + 
Sbjct: 1132 RLMLGDV 1138


>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
          Length = 1149

 Score = 1282 bits (3318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1150 (56%), Positives = 825/1150 (71%), Gaps = 36/1150 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L   + +  DK+ LLP FLK++GLVKQHLDSFNYFV+  ++KI++AN  ++S +DP  
Sbjct: 24   KRLTDEINTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILKANSLVLSDVDPDF 83

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            ++++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    +  +   
Sbjct: 84   YVKYIDIRVGHKSTSPPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRG----RKIIRHY 139

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIMLRS +C+L G D+  +A++ ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 140  DLEIGRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVILVQEQLSKNRI 199

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + IPI++V+KA G+ SD
Sbjct: 200  IVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIVLKAAGVTSD 259

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G +  Y  L + + EE A L+++TQ++AL YL  +VK     G+P   +   
Sbjct: 260  LEILQLVCGSNSNYQDLFVVNFEEAAKLEVFTQQQALLYLGKRVKTIRRAGAPKLSQLQE 319

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+AVM RR++ AM N   +DD+DYVGNKRLEL+GQ
Sbjct: 320  GIEAIATTIIAHLTVVDLQFREKALYMAVMARRVIMAMHNPKMVDDRDYVGNKRLELAGQ 379

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D IL KPSR+S FD  LS  I  ++IT+GL R +STGN+
Sbjct: 380  LMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNW 439

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 440  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 499

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LC  LG E +  L    LH   +F +  NG 
Sbjct: 500  PEGEACGLVKNLALMTHITTDDEENPIKKLCTALGCESILGLDSATLHVEGNFGIYLNGT 559

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +LG  R P  F    R+LRRAGK+  FVS++ N  Q+ V+IA+DGGR+CRPL+I +   S
Sbjct: 560  LLGTTRFPVKFVTDFRRLRRAGKVSAFVSIYTNSHQQAVHIATDGGRICRPLIIVENNKS 619

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--ATPDT--THIEIE 668
            +++  H+ +LL+G   FDDFL+EGL+EYLDVNEEN++LIALYE D    P+   TH+EIE
Sbjct: 620  KVEAKHLTKLLNGEWEFDDFLKEGLVEYLDVNEENDSLIALYEKDIGENPNATVTHLEIE 679

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++
Sbjct: 680  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMV 739

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSSLDRGFGRC VV+K T   +
Sbjct: 740  KTKTIELINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLK 799

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY N T D IL   R     E +   H +      L  DGL   G  I+   VY NK  P
Sbjct: 800  KYPNHTKD-ILSGMRVDENDEPI-FPHRA------LGPDGLGEVGSRIENGQVYANKCVP 851

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
              +  S +    Q ++ +R A   YKGP  E   VD+V +    N    IK L+R TRRP
Sbjct: 852  TNSGDSSLGQPQQVEN-HREAPLFYKGP--EPSYVDQVMMSVSDNDQALIKVLLRQTRRP 908

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+ GKA
Sbjct: 909  ELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA 968

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+ FG        +E +S+ LV+ GFSY+GKDM+YSGITG  LQAYIF GP
Sbjct: 969  GVLNGSLEYGTCFG-----GSKLEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGP 1023

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ E
Sbjct: 1024 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1083

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD FEV VC  CGL+GY +       C+TCK+ +NI  M +PYA KLL QEL SM
Sbjct: 1084 RLMISSDAFEVDVCNKCGLMGYNSW------CTTCKSAENIIKMTIPYAAKLLFQELLSM 1137

Query: 1149 NIVPRLKLAE 1158
            NI PRL+L +
Sbjct: 1138 NIAPRLRLGD 1147


>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
 gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
          Length = 1157

 Score = 1282 bits (3317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1154 (55%), Positives = 820/1154 (71%), Gaps = 41/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDS+NYFV+  ++KI++AN+ ++S +DP  
Sbjct: 29   KKLTDEINTAKDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            ++++ D+R+G  S +  GV E  L PH CRL D+TY+API V++EY +G    +  +  N
Sbjct: 89   YVKYLDIRVGHKSTSKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRG----RKIIRHN 144

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+P+MLRS +C+L G  EA +A++ ECPLDPGGYF++ GTEKV+L+QEQLSKNR+
Sbjct: 145  DLEIGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRI 204

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + IPI++++KA G+ SD
Sbjct: 205  IVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIILKAAGIVSD 264

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G DP Y  L + + EE A L+++TQ++AL Y+  +VK     G+P   +   
Sbjct: 265  LEILQLVCGSDPNYQDLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQLQE 324

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  F+ K  Y+A M RR+V AM N   +DD+DYVGNKRLEL+GQ
Sbjct: 325  GIEAIATTIIAHLTVSDLQFKEKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 384

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D +L KPSR+S FD  LS  I  ++IT+GL R +STGN+
Sbjct: 385  LMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNW 444

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 445  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 504

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LC  LG E +  L    LH   +F V  NG 
Sbjct: 505  PEGEACGLVKNLALMTHITTDDEEAPVKKLCIVLGCEPIFALDSATLHVEGNFGVYLNGT 564

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G  R P  F    R LRR GK+  F+S++ N   + V+IA+DGGR+CRPL+I + G S
Sbjct: 565  LIGTTRFPVKFVHDFRHLRRNGKVSAFISIYTNTHHQAVHIATDGGRICRPLIIVENGKS 624

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD----TTHIEIE 668
            ++   H+ +L++   SFDDFL+ GL+EYLDVNEEN++LIALYE D T +     TH+EIE
Sbjct: 625  KVTAEHLAKLINQEWSFDDFLKHGLVEYLDVNEENDSLIALYEDDITANPGAVVTHLEIE 684

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++
Sbjct: 685  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMV 744

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC VV+K T   +
Sbjct: 745  KTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLK 804

Query: 789  KYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            KY N T D +  +R D         Q           L  DGL   G  I    V+ NK 
Sbjct: 805  KYPNHTQDILAGMRVDENNKPIFPHQA----------LGPDGLGEVGSRIFNGQVFANKC 854

Query: 847  SPLETRGSIMSPTGQ--TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
             P  +  S +    +  T   +R A   YKGP  E   +D+V +    N    IK L+R 
Sbjct: 855  VPTNSGDSTLGAQQEQRTAESHREAPAFYKGP--EPSYIDQVMMSVSDNDQALIKVLLRQ 912

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+
Sbjct: 913  TRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELI 972

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAGV  G   YG+ FG        +E +S+ LV+ GFSY+GKDM+YSGITG  LQAYI
Sbjct: 973  SGKAGVLNGSLEYGTCFG-----GSKLEDMSKILVEKGFSYSGKDMLYSGITGECLQAYI 1027

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS 
Sbjct: 1028 FFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQ 1087

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD FEV VC  CGL+GY N       C+TCK+ +N+  M +PYA KLL QE
Sbjct: 1088 LLLERLMISSDAFEVDVCNKCGLMGYNNW------CTTCKSSENVIKMTIPYAAKLLFQE 1141

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMNI PRL+L +
Sbjct: 1142 LLSMNIAPRLRLGD 1155


>gi|164661167|ref|XP_001731706.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
 gi|159105607|gb|EDP44492.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
          Length = 1131

 Score = 1280 bits (3312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1151 (54%), Positives = 828/1151 (71%), Gaps = 39/1151 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  PVK++ DK+ LLP +L+V+GLVKQH+DSFNYFV+  ++ I+RAN+R+ S IDP  
Sbjct: 9    KSLNEPVKAIEDKWLLLPAYLQVKGLVKQHIDSFNYFVDVDLKNILRANERVTSDIDPKF 68

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P     D +   + PH CRL D+TY+A I V+IEY +G       + + 
Sbjct: 69   YLKYTNITVGHPERADPDAIDRSITPHECRLRDITYSAFIYVDIEYTRGGKI----VRRK 124

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            +V IGR+PIMLRS +C L G+DEA LAR+ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+
Sbjct: 125  NVPIGRLPIMLRSNKCWLAGQDEATLARMNECPLDPGGYFVVKGTEKVILVQEQLSKNRI 184

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D +K  + ASVTSST   KSK+ +  + G +Y+  N   + IPI+VV +AMG++SD
Sbjct: 185  IVEADSRKEVVQASVTSSTHERKSKSYVLTKHGLIYVKHNSLNEDIPIVVVFRAMGIQSD 244

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREG 313
            +E++Q+V G+D  Y+ L   ++E  A L I+T+++AL+Y+  +VK  R   G      + 
Sbjct: 245  KEILQLVAGQDETYAELFSINLERAAKLGIFTRQQALDYMGARVKIMRRGVGMRRTASD- 303

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L  V +A+VPV   +FR K  Y+A M+RR++  M+++  +DD+DYVGNKRLEL+G
Sbjct: 304  EALEVLATVIMAHVPVEQGDFRNKTMYIATMVRRVLVCMVDESKVDDRDYVGNKRLELAG 363

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLSTGN 431
            QL++LLFEDLFK    +++  +D +L KP+R+S FD  +QF    D IT G  R +STGN
Sbjct: 364  QLLALLFEDLFKKFNFDLKTNIDKVLKKPNRTSEFDAYNQFFYHGDYITAGFVRAISTGN 423

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP D
Sbjct: 424  WSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSD 483

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGEACGLVKNLALMTH+TTD +E P++ LCY LG+ED+ LL+G EL+ P++++V  NG
Sbjct: 484  TPEGEACGLVKNLALMTHITTDVDEAPIVRLCYALGLEDINLLTGAELYQPSTYIVFLNG 543

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             ++G    P  F    R+LRRAG I EFV ++ N   + V IASDGGR+CRP++I + G 
Sbjct: 544  NVVGVTLTPHRFVAQFRRLRRAGLISEFVGIYTNTHHQTVNIASDGGRICRPMIIVENGR 603

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             ++   H+++L  G  +FDDFLR GL+EYLDVNEEN++ IAL+E    P TTH+EIE FT
Sbjct: 604  PQVTSEHIRQLQAGTMTFDDFLRRGLVEYLDVNEENDSNIALFEHSIGPSTTHLEIECFT 663

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LG  AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL+VYPQ+P+++T+
Sbjct: 664  LLGACAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLMVYPQKPMVSTK 723

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+GYDKL AGQNA VAVMS+SGYDIEDA+VMN +SLDRGFGRC V++K + + +KYA
Sbjct: 724  TIELIGYDKLPAGQNAMVAVMSFSGYDIEDALVMNCASLDRGFGRCQVMRKQSTVLRKYA 783

Query: 792  NSTSDRILRP--DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            N T DR+     +  G    R +           L+ DG++  GE ++P DVYINK+ P 
Sbjct: 784  NGTFDRLADAPVNEHGEPLRRFEA----------LEADGISGAGERLEPGDVYINKQIPT 833

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGP-DGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                +       +   Y++A  +YK P +G    +D+V +    +    +K LIR TRRP
Sbjct: 834  NANDNSAGTMLNSAITYKNAPLSYKSPVEG---YIDQVLISDTDSDQTLVKSLIRQTRRP 890

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGV G IV Q D PF+++GICPD+IMNPHGFPSRMTVGKMIEL+ GKA
Sbjct: 891  ELGDKFSSRHGQKGVIGLIVPQADMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKA 950

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+AFG        VE +S  LV+HG+ Y GK+ + SG+TG PL+AY++ GP
Sbjct: 951  GVLRGTQEYGTAFG-----GSKVEDMSRILVEHGYHYGGKEYMTSGMTGEPLEAYVYFGP 1005

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGA+ L+ E
Sbjct: 1006 IYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLE 1065

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLMVSSD F V  C  CGLLGY       G C  CK+  ++  + +PYA KLL QEL +M
Sbjct: 1066 RLMVSSDAFVVNACEECGLLGY------NGYCGYCKSSKHVVKLTVPYATKLLFQELMAM 1119

Query: 1149 NIVPRLKLAEA 1159
             +VPRL L EA
Sbjct: 1120 QVVPRLVLEEA 1130


>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
 gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
          Length = 1165

 Score = 1280 bits (3311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1157 (55%), Positives = 823/1157 (71%), Gaps = 46/1157 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN+ ++S +DP  +L
Sbjct: 34   LTDQINTADDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYL 93

Query: 81   RFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+RIG  S +  G  E  L PH CRL D+TY+API V++EY +G    K  M K D+
Sbjct: 94   KYLDIRIGHKSTSPPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRG---RKIIMHK-DL 149

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +C+L G DE ++AR  ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I+
Sbjct: 150  EIGRMPIMLRSNKCILDGIDEQQMARFDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV 209

Query: 200  DTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
            + D+K NI  ASVTSST   KSKT +  +   +YL  N   + IPI++++KA G+ SD E
Sbjct: 210  EADEKKNIVQASVTSSTHERKSKTYVITKNDNIYLKHNSISEDIPIVIILKAAGITSDLE 269

Query: 259  VVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGRAF 316
            ++Q+V G+DP+Y  L + + EE A L+I+TQ++AL Y+  +VK     G+P   +     
Sbjct: 270  ILQLVCGQDPQYQDLFVVNFEEAAKLEIFTQQQALNYVGKRVKTIRRAGAPKLSQMQEGI 329

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V +  FR K  Y+A M RR++  M N   +DD+DYVGNKRLEL+GQL+
Sbjct: 330  EAIATTIIAHLTVSDLQFREKALYIAAMARRVLMTMHNPKMVDDRDYVGNKRLELAGQLM 389

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   S+ +  +D IL KPSR+S FD  LS  I  ++IT+GL R +STGN+ +
Sbjct: 390  SLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINIHSNNITMGLNRAISTGNWSL 449

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 450  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPE 509

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+T+D+EE P+  LCY LG ED+  +    L+   +F V  NG ++
Sbjct: 510  GEACGLVKNLALMTHITSDDEELPIKKLCYVLGCEDILGIDSATLYADGNFGVCVNGTLI 569

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL-VIADKGISR 613
            G  R P  F    R LRR+GK+  F+S++ N  Q+ V+IA+DGGR+CRPL +I +K  S+
Sbjct: 570  GCTRFPVKFVSDFRNLRRSGKVSAFISIYTNSHQKAVHIATDGGRICRPLIIIGEKNKSK 629

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT----THIEIEP 669
            + EHH+ +LL G  +FDDFL++GL+EYLDVNEEN++LIALYE D    +    TH+EIEP
Sbjct: 630  VNEHHLAKLLSGKWAFDDFLKDGLVEYLDVNEENDSLIALYEHDLVEHSYQTFTHMEIEP 689

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL+VYPQ+P++ 
Sbjct: 690  FTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIGYNQFRRIDTLLYLMVYPQQPMVK 749

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+ YDKL AGQNA VAVMSYSGYDIEDA+V+NKSS+DRGFGRC V++K T   ++
Sbjct: 750  TKTIELIDYDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRKNTITLKR 809

Query: 790  YANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            Y N T D +  +R D  G       +  H+      L  DGL   G  ++   VY+NK  
Sbjct: 810  YPNHTKDLVSGMRVDENGE-----PIFPHA-----ALGPDGLGEVGMKVENGQVYVNKCV 859

Query: 848  PLETRGSIMSPTG------QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            P     S++          QT   +R     YK P  E   VD+V +    N    IK L
Sbjct: 860  PNNAGESVLGSNDQQHNQQQTAESHREVPAFYKAP--EPAYVDQVMMSVSDNDQALIKVL 917

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMI
Sbjct: 918  LRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMI 977

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAGV  G   YG+ FG        +E +S TLV  GFSY+GKDM+YSGITG  LQ
Sbjct: 978  ELISGKAGVLNGSLEYGTCFG-----GSKLEEMSRTLVDKGFSYSGKDMLYSGITGECLQ 1032

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYG
Sbjct: 1033 AYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYG 1092

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            AS L+ ERLM+SSD FEV +C  CGL+GY +       C++CK+ + I  M +PYA KLL
Sbjct: 1093 ASQLLLERLMLSSDAFEVDICNQCGLMGYNSW------CTSCKSSEYIIKMTIPYAAKLL 1146

Query: 1142 IQELQSMNIVPRLKLAE 1158
             QEL SMNI PRLKL +
Sbjct: 1147 FQELLSMNIAPRLKLGD 1163


>gi|238908505|ref|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo sapiens]
 gi|114646705|ref|XP_509335.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 4
            [Pan troglodytes]
 gi|332241690|ref|XP_003270011.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Nomascus leucogenys]
 gi|395744769|ref|XP_003778157.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Pongo abelii]
 gi|397525260|ref|XP_003832592.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Pan paniscus]
          Length = 1075

 Score = 1280 bits (3311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1098 (57%), Positives = 797/1098 (72%), Gaps = 29/1098 (2%)

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIE 122
            ++AN+++ S  DP  +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IE
Sbjct: 1    MKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 60

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +GS      + +N + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG 
Sbjct: 61   YTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGV 116

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKI 242
            EKV+LIQEQLSKNR+I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + I
Sbjct: 117  EKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDI 176

Query: 243  PIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            PI+++ KAMG+ESDQE+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R 
Sbjct: 177  PIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQ 236

Query: 303  TF--GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                G P   +   A  +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD
Sbjct: 237  RMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDD 295

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            +DY GNKRLEL+GQL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT
Sbjct: 296  RDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQIT 354

Query: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480
             G+   +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQ
Sbjct: 355  NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ 414

Query: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540
            PSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL 
Sbjct: 415  PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS 474

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
             PN FLV  NG ILG  R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+
Sbjct: 475  YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRL 534

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRP +I  K    +   HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     
Sbjct: 535  CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINK 594

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
            DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL
Sbjct: 595  DTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLL 654

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
             YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V 
Sbjct: 655  AYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVY 714

Query: 781  KKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            K      ++Y N T D+++ P      A R  +  H      ILD DG+ +PGE ++   
Sbjct: 715  KNAKCTLKRYTNQTFDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQ 767

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            V +NK  P  T+  +         +Y+    TYKG       +++V + S+      IK 
Sbjct: 768  VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKM 825

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+
Sbjct: 826  LLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 885

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IELL GKAGV  GRFHYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL
Sbjct: 886  IELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 940

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            +AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI Y
Sbjct: 941  EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY 1000

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GASML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKL
Sbjct: 1001 GASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKL 1054

Query: 1141 LIQELQSMNIVPRLKLAE 1158
            L QELQSMNI+PRLKL++
Sbjct: 1055 LFQELQSMNIIPRLKLSK 1072


>gi|402887515|ref|XP_003907137.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Papio anubis]
          Length = 1075

 Score = 1280 bits (3311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1098 (57%), Positives = 797/1098 (72%), Gaps = 29/1098 (2%)

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIE 122
            ++AN+++ S  DP  +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IE
Sbjct: 1    MKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 60

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +GS      + +N + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG 
Sbjct: 61   YTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGV 116

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKI 242
            EKV+LIQEQLSKNR+I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + I
Sbjct: 117  EKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDI 176

Query: 243  PIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            PI+++ KAMG+ESDQE+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R 
Sbjct: 177  PIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQ 236

Query: 303  TF--GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                G P   +   A  +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD
Sbjct: 237  RMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDD 295

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            +DY GNKRLEL+GQL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT
Sbjct: 296  RDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQIT 354

Query: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480
             G+   +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQ
Sbjct: 355  NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ 414

Query: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540
            PSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL 
Sbjct: 415  PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS 474

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
             PN FLV  NG ILG  R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+
Sbjct: 475  YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRL 534

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRP +I  K    +   HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     
Sbjct: 535  CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINK 594

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
            DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL
Sbjct: 595  DTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQNRIDTLMYLL 654

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
             YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V 
Sbjct: 655  AYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVY 714

Query: 781  KKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            K      ++Y N T D+++ P      A R  +  H      ILD DG+ +PGE ++   
Sbjct: 715  KNAKCTLKRYTNQTFDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQ 767

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            V +NK  P  T+  +         +Y+    TYKG       +++V + S+      IK 
Sbjct: 768  VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKM 825

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+
Sbjct: 826  LLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 885

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IELL GKAGV  GRFHYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL
Sbjct: 886  IELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 940

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            +AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI Y
Sbjct: 941  EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY 1000

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GASML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKL
Sbjct: 1001 GASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKL 1054

Query: 1141 LIQELQSMNIVPRLKLAE 1158
            L QELQSMNI+PRLKL++
Sbjct: 1055 LFQELQSMNIIPRLKLSK 1072


>gi|193784141|dbj|BAG53685.1| unnamed protein product [Homo sapiens]
          Length = 1075

 Score = 1279 bits (3309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1098 (57%), Positives = 797/1098 (72%), Gaps = 29/1098 (2%)

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIE 122
            ++AN+++ S  DP  +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IE
Sbjct: 1    MKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIE 60

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y +GS      + +N + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG 
Sbjct: 61   YTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGV 116

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKI 242
            EKV+LIQEQLSKNR+I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + I
Sbjct: 117  EKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDI 176

Query: 243  PIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            PI+++ KAMG+ESDQE+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R 
Sbjct: 177  PIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQ 236

Query: 303  TF--GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                G P   +   A  +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD
Sbjct: 237  RMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDD 295

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            +DY GNKRLEL+GQL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT
Sbjct: 296  RDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQIT 354

Query: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480
             G+   +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQ
Sbjct: 355  NGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ 414

Query: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540
            PSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL 
Sbjct: 415  PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS 474

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
             PN FLV  NG ILG  R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+
Sbjct: 475  YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRL 534

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRP +I  K    +   HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     
Sbjct: 535  CRPYIIVKKQKPAVINKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINK 594

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
            DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL
Sbjct: 595  DTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLL 654

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
             YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V 
Sbjct: 655  AYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVY 714

Query: 781  KKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            K      ++Y N T D+++ P      A R  +  H      ILD DG+ +PGE ++   
Sbjct: 715  KNAKCTLKRYTNQTFDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQ 767

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            V +NK  P  T+  +         +Y+    TYKG       +++V + S+      IK 
Sbjct: 768  VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKM 825

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+
Sbjct: 826  LLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 885

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IELL GKAGV  GRFHYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL
Sbjct: 886  IELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPL 940

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            +AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI Y
Sbjct: 941  EAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY 1000

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GASML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKL
Sbjct: 1001 GASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKL 1054

Query: 1141 LIQELQSMNIVPRLKLAE 1158
            L QELQSMNI+PRLKL++
Sbjct: 1055 LFQELQSMNIIPRLKLSK 1072


>gi|428184687|gb|EKX53541.1| hypothetical protein GUITHDRAFT_64211 [Guillardia theta CCMP2712]
          Length = 1155

 Score = 1278 bits (3307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1153 (54%), Positives = 838/1153 (72%), Gaps = 31/1153 (2%)

Query: 15   LPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI 74
            L    ++  P+K+V DK++LLP FLKVRGL KQ +DSFNYF+N  ++ I++AN++I    
Sbjct: 24   LAPADQIGKPIKTVKDKWRLLPAFLKVRGLTKQQIDSFNYFLNVDMKLILKANNKITCDA 83

Query: 75   DPSIFLRFKDVRIGQPSMTV-----DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ---G 126
            DP  +L +KD+R+G P++        GV+E + P  CRL DMTY A ILV+IEY +   G
Sbjct: 84   DPGWYLEYKDIRVGPPNVDAFCDRPAGVNEGITPQQCRLRDMTYYAQILVDIEYTRDQAG 143

Query: 127  SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
               +K  + K++  IGR+PIMLR   CVL GK E E++ +GECPLDPGGYF+++GTEKV+
Sbjct: 144  GGGKKERVRKDNHPIGRMPIMLRCSHCVLNGKSETEMSAMGECPLDPGGYFVVRGTEKVI 203

Query: 187  LIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMV 246
            LIQEQLSKNR+II+ D KG  +ASVTSST   K+KT I ++ G+  L  N F   IPI++
Sbjct: 204  LIQEQLSKNRIIIERDAKGQPSASVTSSTAKTKTKTNITIKNGRFQLKHNSFTDSIPIVI 263

Query: 247  VMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
             +KAMG+ SDQE++Q+VG +  ++  L  S+E CA      + +AL+Y+  K+K + F  
Sbjct: 264  ALKAMGLTSDQEIIQLVGSEALFADDLAASLEVCAT---EIRPQALDYIGNKIKPTKFAR 320

Query: 307  -PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
               + +   A   L  V +++VPV   +FR K  Y+ +MLRR+++AM ++  MDDKDY G
Sbjct: 321  RQQSTKAEEAREKLATVVVSHVPVVKYDFRAKAIYICLMLRRIIQAMHDETVMDDKDYYG 380

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLER 425
            NKRLEL+GQ +SLLFED+FK+  S+VQK     L KPSR++ FD+ +++    IT  L  
Sbjct: 381  NKRLELAGQTMSLLFEDVFKSFNSDVQKIAQKQLEKPSRTTTFDVLKYLPPTKITSALVN 440

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             +STGN++++RF M R+G+TQVL+RLS+I  LG +TRV  QFEK+RKVSGPRALQPSQWG
Sbjct: 441  AISTGNWNLRRFGMERQGVTQVLSRLSYIAALGMITRVQSQFEKTRKVSGPRALQPSQWG 500

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLCP DTPEGE+CGLVKNL+LMTHVTTD++E P+  LCY LGVEDL +LSGEE    N +
Sbjct: 501  MLCPADTPEGESCGLVKNLSLMTHVTTDDDELPIELLCYDLGVEDLGILSGEEATLGNVY 560

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            LV  NGL+LG HR PK F  ++R +RR G++GEFVS++ N +QR V+I+ DGGRVCRPL+
Sbjct: 561  LVFLNGLLLGLHRAPKNFVQLLRAMRRRGRLGEFVSIYSNARQRTVHISCDGGRVCRPLI 620

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I   G S + + H+KE+L   R+F DFL+EGLIEYLDVNEEN++LIALYE    P TTH+
Sbjct: 621  IVKNGRSFVTDQHIKEVLSNCRTFSDFLKEGLIEYLDVNEENDSLIALYEHGIGPKTTHL 680

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EI+P T++G  AGLIP PHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLVYPQR
Sbjct: 681  EIDPLTVMGACAGLIPNPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLLVYPQR 740

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            PL  T+TIE + + ++ AGQNATVAVMSY+GYDIEDA+V+N+S++DRGFGR IV+KK T 
Sbjct: 741  PLAQTKTIEFINFHRIPAGQNATVAVMSYTGYDIEDAVVLNRSAVDRGFGRTIVLKKSTT 800

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              ++Y+N+  DRI  P ++G G ER+  +  +N     LD DG+   G  +    + +NK
Sbjct: 801  SLKRYSNAAEDRITYP-QSG-GNERL-ALRTAN-----LDRDGIVGVGSKVSQGQILVNK 852

Query: 846  ESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
              P +    I +P    +  ++SA   YK  D     VD+V L S+ +    +K L+R T
Sbjct: 853  MVPKDISTVINNPDELREDAFKSAPLVYK--DKADGYVDQVLLTSNHDEHFLVKVLMRTT 910

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPELGDKFSSRHGQKGV G I+ QED PF+E G+CPDLIMNPHGFPSRMTVGK++E+LG
Sbjct: 911  RRPELGDKFSSRHGQKGVTGIIIPQEDMPFTEEGLCPDLIMNPHGFPSRMTVGKLLEMLG 970

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GKA +  G+F   +AF   +  A +V++IS+TLV HG+ + GK+++ SGITG P+ AYIF
Sbjct: 971  GKAALMNGKFADATAF---ASTASSVQAISDTLVLHGYHFGGKELLTSGITGEPVPAYIF 1027

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
             GPIYYQKLKHMV DKMHAR  GPR +LTRQPTEGR+++GGLR+GEMERDCL++YG+S L
Sbjct: 1028 FGPIYYQKLKHMVQDKMHARHKGPRTVLTRQPTEGRSKDGGLRLGEMERDCLVSYGSSAL 1087

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERLM+SSD F+  VC+ CGL+GY       G C  CK   ++S +++PYACKL+  EL
Sbjct: 1088 LLERLMISSDEFQCHVCKKCGLIGY------PGWCQNCKTNLHMSMIQMPYACKLVFHEL 1141

Query: 1146 QSMNIVPRLKLAE 1158
            QSMNIVPRL+L +
Sbjct: 1142 QSMNIVPRLRLED 1154


>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
 gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
          Length = 1142

 Score = 1278 bits (3306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1145 (55%), Positives = 819/1145 (71%), Gaps = 40/1145 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI+ AN  I+S +DP  
Sbjct: 29   KKLTDAIDTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDKDLKKIIEANQVILSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEKL-NPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+RIG+ S    G  EKL  PH CRL DMTY+API V+IEY +G    +  +   
Sbjct: 89   YLKYVDIRIGEKST---GSKEKLVPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHK 141

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            DV IGR+PIMLRS +C+L G D+  +A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 142  DVEIGRMPIMLRSNKCILNGADQKVMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 201

Query: 198  IIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D+K +I  ASVTSST   KSKT +  + GK+YL  N   +++PI +++KA G+ SD
Sbjct: 202  IVEADEKKSIVQASVTSSTHERKSKTYVVTKNGKIYLKHNSIAEEVPIAIILKACGIVSD 261

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
             E++Q+V G D  Y  +   ++EE   L+I TQ++ALEY+  KVK          +EG  
Sbjct: 262  LEIMQLVCGNDSSYQDIFAINLEEAVKLNISTQQQALEYIGSKVKTIRRQKLSILQEG-- 319

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               +    +A++ V   +FR K  Y+A+M RR+V A+ N   +DD+DYVGNKRLEL+GQL
Sbjct: 320  IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIENPKMVDDRDYVGNKRLELAGQL 379

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
            +SLLFEDLFK   S+ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ 
Sbjct: 380  ISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWS 439

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTP
Sbjct: 440  LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTP 499

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    LH   ++ V  NG +
Sbjct: 500  EGEACGLVKNLALMTHITTDDEEDPIKKLCYMLGVEDITLIDSASLHL--NYGVHLNGTL 557

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G  R P  F    R+LRR G++ EFVS++ N  Q+ V+IA+DGGR+CRPL+I   G S 
Sbjct: 558  IGTTRFPLNFVSQFRQLRRTGRVSEFVSIYTNSHQQAVHIATDGGRICRPLIIVSNGKSH 617

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +K  H+KELL+G   FDDFL+ GL+EYLDVNEEN+  IALYE D +  +TH+EIEPFT+L
Sbjct: 618  VKAEHLKELLEGKLDFDDFLKLGLVEYLDVNEENDCFIALYEKDLSNRSTHLEIEPFTVL 677

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL++YPQ+P++ T+TI
Sbjct: 678  GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFKRIDTLLYLMIYPQQPMVKTKTI 737

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC   +K T + ++Y N 
Sbjct: 738  ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNH 797

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
            T D I        G  R+   ++       L  DGL   G  +    +YINK  P     
Sbjct: 798  TQDII--------GGMRVDENNNPIWQHEALGPDGLGEVGVKVNSGQIYINKSVPTNASD 849

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
            S+++    T S+Y+     Y+ P      +D+V +   +N    IK L+R  RRPELGDK
Sbjct: 850  SVLT---STQSQYKETPVVYRSP--VPSHIDQVMMSVSENDQALIKVLLRQNRRPELGDK 904

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            FSSRHGQKGVCG IV  ED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  G
Sbjct: 905  FSSRHGQKGVCGIIVNHEDMPFNDEGISPDIIMNPHGFPSRMTVGKMIELVSGKAGVLNG 964

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
               YG+ FG        +E +S+ LV++G++Y+GKDM+YSG+TG  LQAYIF GPIYYQK
Sbjct: 965  SLEYGTCFG-----GSKLEDMSQILVENGYNYSGKDMLYSGVTGECLQAYIFFGPIYYQK 1019

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+S
Sbjct: 1020 LKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMIS 1079

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD FEV VC  CGL+GY      +G C+TCK+ + I  M +PYA KLL QEL +MNI PR
Sbjct: 1080 SDAFEVDVCHKCGLMGY------SGWCTTCKSAEFIVKMTIPYAAKLLFQELLAMNIAPR 1133

Query: 1154 LKLAE 1158
            L+L +
Sbjct: 1134 LRLED 1138


>gi|403415400|emb|CCM02100.1| predicted protein [Fibroporia radiculosa]
          Length = 1181

 Score = 1277 bits (3305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1186 (54%), Positives = 827/1186 (69%), Gaps = 75/1186 (6%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KS+ DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I++AN+++ S +DP  +L
Sbjct: 24   LTDPIKSIEDKWLLLPAFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWL 83

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G P  T  D V + + PH CRL D TY APILV I+Y +G    K+ + + +V
Sbjct: 84   KYTDIVVGFPDRTDADAVDKSVTPHECRLRDTTYGAPILVTIQYTRG----KSVVRRANV 139

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS +CVL G++EA+LAR+ ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+I+
Sbjct: 140  NIGRLPIMLRSNKCVLTGRNEAQLARMTECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV 199

Query: 200  DTD-KKGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            + D  KG + AS TSST   +KSKT +  +KGK+YL  N   + +PI++ +KA+G++SD+
Sbjct: 200  EVDPTKGIVQASCTSSTHGGLKSKTYVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDK 259

Query: 258  EVVQM-VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGR 314
            E++ +  G    Y +   P++EE A L I T+ +ALEY+  +VK  R   G P       
Sbjct: 260  EILLLTAGNHEAYKSAFSPNLEEAAKLGILTRHQALEYIGSRVKVNRRVVG-PRRPAWEE 318

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L  + LA+VPV   +FR K  +VA M RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 319  ALEALATIVLAHVPVQGLDFRSKAIFVATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQ 378

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL--SQFIVRDSITVGLERTLSTGNF 432
            L++LLFEDLFKT  + ++  +D +L KPSR+S FD   +     D IT G  R +STGN+
Sbjct: 379  LLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFNTMQFQGDHITSGFVRAISTGNW 438

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 439  SLKRFKMDRAGVTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 498

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE----------DLELLSGEELHNP 542
            PEGEACGLVKNLALMTH+TTD +E P+I + + LGVE           + L++G E++ P
Sbjct: 499  PEGEACGLVKNLALMTHITTDVDEEPIIRIAFMLGVEGAYFFCICAGHISLVTGAEIYGP 558

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
             +F+V  NG I+G  R P  F    RKLRRAG+  EFVSV++N   R V IASDGGR+CR
Sbjct: 559  GTFVVNVNGTIIGLTRYPARFVSNFRKLRRAGRFSEFVSVYINHHHRTVLIASDGGRICR 618

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            P++I + G  R+   H+ +L  G+  FDDFLR+GL+EYLDVNEEN++ IALYE D  P T
Sbjct: 619  PMIIVENGRPRVASDHILQLKKGLLMFDDFLRKGLVEYLDVNEENDSYIALYEADIVPST 678

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL VY
Sbjct: 679  THLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVY 738

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ+P++ T+TIEL+GYD+L AGQNATVAVMSYSGYDIEDA++ NK+SLDRG+GRC V++K
Sbjct: 739  PQQPMVKTKTIELIGYDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRK 798

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
               + +KY N T DR+       P  E  Q     +++ L    DGLA  GE + P DVY
Sbjct: 799  NATLIRKYPNGTFDRLA----DAPVDESGQTQKKYDIIQL----DGLAGVGERVDPGDVY 850

Query: 843  INKESPLETRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            INK++P  T  +  + TGQ  +  Y++A  TYK P      +D+V +   +N    IK L
Sbjct: 851  INKQTP--TNANDNTFTGQAATVPYKNAPMTYKSP--VAGYIDKVMVSDTENDQTLIKVL 906

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            IR TRRPELGDKFSSRHGQKGVCG IV QED PF+++G+ PD IMNPHGFPSRMTVGKMI
Sbjct: 907  IRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGVVPDTIMNPHGFPSRMTVGKMI 966

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            ELL GKAGV  G+  YG+AFG        VE +S  L++HGFSY GKDM+ SGITG P++
Sbjct: 967  ELLAGKAGVLAGKLQYGTAFG-----GSKVEDMSRILIEHGFSYAGKDMLTSGITGEPME 1021

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARG--------------------SGPRVMLTRQPTEGR 1061
            AY++ GPIYYQKL   V    H  G                    +GPR  LTRQPTEGR
Sbjct: 1022 AYVYFGPIYYQKLSAPVCVVAHGDGQDARAREVSDAVVSSKQKLSAGPRATLTRQPTEGR 1081

Query: 1062 ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS 1121
            +R GGLR+GEMERDCLI YGA+ L+ ERLM+SSD FEV  C  CGLLGY       G C 
Sbjct: 1082 SREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACEECGLLGY------NGWCP 1135

Query: 1122 TCKNGDNISSMKLPYACKLLIQE--------LQSMNIVPRLKLAEA 1159
             CK+   ++ + +PYA KLL QE        L +MN+VPRL L +A
Sbjct: 1136 FCKSSKRMAQLTIPYAAKLLFQEASRARSVCLMAMNVVPRLVLDDA 1181


>gi|68490742|ref|XP_710813.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|68490765|ref|XP_710802.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432059|gb|EAK91565.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|238879996|gb|EEQ43634.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida albicans
            WO-1]
          Length = 1157

 Score = 1276 bits (3303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1156 (55%), Positives = 820/1156 (70%), Gaps = 45/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDS+NYFV+  ++KI++AN+ ++S +DP  
Sbjct: 29   KKLTDEINTAKDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            ++++ D+R+G  S +  GV E  L PH CRL D+TY+API V++EY +G    +  +  N
Sbjct: 89   YVKYLDIRVGHKSTSKPGVKEVILPPHECRLRDLTYSAPIYVDVEYTRG----RKIIRHN 144

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+P+MLRS +C+L G  EA +A++ ECPLDPGGYF++ GTEKV+L+QEQLSKNR+
Sbjct: 145  DLEIGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNRI 204

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + IPI++++KA G+ SD
Sbjct: 205  IVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIILKAAGIVSD 264

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G D  Y  L + + EE A L+++TQ++AL Y+  +VK     G+P   +   
Sbjct: 265  LEILQLVCGSDSNYQDLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQLQE 324

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+A M RR+V AM N   +DD+DYVGNKRLEL+GQ
Sbjct: 325  GIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 384

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D +L KPSR+S FD  LS  I  ++IT+GL R +STGN+
Sbjct: 385  LMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNW 444

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 445  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADT 504

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  LC  LG E +  L    LH   +F V  NG 
Sbjct: 505  PEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCEPIFALDSATLHVDGNFGVYLNGT 564

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ++G  R P  F    R LRR GK+  F+S++ N   + V+IA+DGGR+CRPL+I + G S
Sbjct: 565  LIGTTRFPVKFVHDFRHLRRVGKVSAFISIYTNTHHQAVHIATDGGRICRPLIIVENGKS 624

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD----TTHIEIE 668
            ++   H+ +L++   SFDDFL  GL+EYLDVNEEN++LIALYE D T +     TH+EIE
Sbjct: 625  KVTAEHLAKLINQEWSFDDFLTHGLVEYLDVNEENDSLIALYEDDITANPGAIVTHLEIE 684

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++
Sbjct: 685  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMV 744

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC VV+K T   +
Sbjct: 745  KTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLK 804

Query: 789  KYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            KY N T D +  +R D       + Q           L  DGL   G  I    V+ NK 
Sbjct: 805  KYPNHTQDILAGMRVDENNKPIFQHQA----------LGPDGLGEVGSRIFNGQVFANKC 854

Query: 847  SPLETRGSIMSPTGQTDSR----YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
             P  +  S +    Q + R    +R A   YKGP  E   +D+V +    N    IK L+
Sbjct: 855  VPTNSGDSTLG--AQQEQRAAESHREAPAFYKGP--EPSYIDQVMMSVSDNDQALIKVLL 910

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIE
Sbjct: 911  RQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIE 970

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+ GKAGV  G   YG+ FG        +E +S+ L++ GFSY+GKDM+YSGITG  LQA
Sbjct: 971  LISGKAGVLNGSLEYGTCFG-----GSKLEDMSKILIEKGFSYSGKDMLYSGITGECLQA 1025

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            YIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGA
Sbjct: 1026 YIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGA 1085

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERLM+SSD FEV VC  CGL+GY +       C+TCK+ +N+  M +PYA KLL 
Sbjct: 1086 SQLLLERLMISSDAFEVDVCNKCGLMGYNSW------CTTCKSSENVIKMTIPYAAKLLF 1139

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL SMNI PRL+L +
Sbjct: 1140 QELLSMNIAPRLRLGD 1155


>gi|325182727|emb|CCA17182.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B isoform
            2 putative [Albugo laibachii Nc14]
          Length = 1177

 Score = 1276 bits (3302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1168 (55%), Positives = 825/1168 (70%), Gaps = 40/1168 (3%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGID 75
            K  LA PV  + DK++LLP FL++RGLVKQH+DSF+YF  T ++KIV  +AN+ + S  D
Sbjct: 24   KPFLAQPVDKLQDKWKLLPYFLQLRGLVKQHIDSFDYFTATELKKIVHAKANNVVRSDAD 83

Query: 76   PSIFLRFKDVRIGQPSMTVDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            P  FL++ D++IG PS+  D  VS  + PH CRL D TYAAP+ V+++Y +G       +
Sbjct: 84   PKFFLQYTDIQIGNPSIEEDAFVSSTVTPHQCRLRDRTYAAPVYVSVKYRRGP----KIV 139

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
              N V+IGRIPIMLRS  CVL GK+  +LA L ECP DPGGYFI+KG EKV+LI EQLSK
Sbjct: 140  TNNKVLIGRIPIMLRSANCVLTGKNHTQLAALKECPYDPGGYFIVKGVEKVVLIHEQLSK 199

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI++ D K NI AS+TSST   KS+T I ++ G++YL  N F   IPI+ +++ MGME
Sbjct: 200  NRVILELDPKQNICASITSSTHERKSRTNIFLKGGRIYLKSNSFGSDIPIIAILRGMGME 259

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFG--------- 305
             DQE++ ++G +P     LL S E+ + L ++TQ +ALEY+  K+   + G         
Sbjct: 260  HDQEIIDLIGSEPNIMDALLASFEQVSELKLFTQLQALEYIGSKMTSQSRGKANSRNGGA 319

Query: 306  SPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
            S P +    A + L ++ L +VP   + FR KC Y+A ++RR++    ++  +DDKDY G
Sbjct: 320  SQPTNIAETARAALANLVLNHVPCEIDQFRLKCVYIAHIVRRIIFTDRDRTRLDDKDYYG 379

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLER 425
            NKRLEL+GQL+SLLFEDLFK   S++++  D+ILSKP+R+S FD+ + I  D+IT G   
Sbjct: 380  NKRLELAGQLLSLLFEDLFKRFNSDLKRQADMILSKPNRASMFDIVKCIRTDTITQGFIH 439

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             L+TGN+ +KRF+M R G+T VL+RLS++  LG MTR+S QFEK+RKVSGPR+LQPSQWG
Sbjct: 440  ALATGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWG 499

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLCP DTPEGEACGLVKNLAL+ HVT+DEE  P+  LC+ LGV D+ L SGE L++ +++
Sbjct: 500  MLCPADTPEGEACGLVKNLALLCHVTSDEESDPIRRLCFDLGVTDVCLCSGEALNHRSNY 559

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            L++ NG+I+G H  P+ F   +R++RRAG IGEFVSV +++ QR VYIASDGGRVCRPL+
Sbjct: 560  LIMLNGIIIGTHGDPRMFVTKLRRIRRAGLIGEFVSVMIHDVQRVVYIASDGGRVCRPLL 619

Query: 606  IADKGISRIK--EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT 663
            + D    R K     M+EL   VR+    + EG +EY+DVNEENN LIAL+E D T  TT
Sbjct: 620  LIDPKTHRPKLSSRQMRELQAHVRTLHSLIVEGCVEYVDVNEENNCLIALHEDDITVRTT 679

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H+EI+P TILGV++ LIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+D+LLY LVYP
Sbjct: 680  HLEIDPVTILGVVSALIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTLVYP 739

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
              P++ +R ++LV +D + AGQNA VAVMSYSGYDIEDAIV+NK+SLDRGFGRC V +K 
Sbjct: 740  HMPMVKSRVLDLVNFDHVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCTVFRKL 799

Query: 784  TAINQKYANSTSDRILRPD------RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
             A+ +KY N T DRI+ P        T  G      +   N     LD DG+A  G I+ 
Sbjct: 800  QAMVKKYPNGTFDRIVGPPDFESVLSTATGGT-AAALGFRNARYASLDADGIARVGGIVH 858

Query: 838  PNDVYINKESPLETRGSIMSPTGQTDS----RYRSARQTYKGPDGETCVVDRVALCSDKN 893
               + INKE P     S+   +G  D      Y  +   YKG      +VD+V + S + 
Sbjct: 859  HGAILINKEQPSNAH-SMGDTSGSNDPLASISYGPSPTCYKG--AVPSIVDKVLITSSET 915

Query: 894  --GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
                L +K L+R TRRPE+GDKFSSRHGQKGVCGTI  QED PF+++GICPDLIMNPHGF
Sbjct: 916  YQTSLLVKVLLRQTRRPEIGDKFSSRHGQKGVCGTICSQEDMPFNDQGICPDLIMNPHGF 975

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTVGKMIEL+ GKAGV  GR  YG+AFGE  G AD V   S  LVK GF+Y GKD +
Sbjct: 976  PSRMTVGKMIELVAGKAGVLHGRRAYGTAFGEKYGTADRVLECSRDLVKAGFNYAGKDYL 1035

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             SGITG PL  YIFMGPIYYQKLKHMV+DKMHAR  GPR +LTRQPTEGR+R+GGLR+GE
Sbjct: 1036 TSGITGEPLLCYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGE 1095

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLI YGASML+ ERLM+SSD F+  VC+ C +LGY       G C +C + D ++S
Sbjct: 1096 MERDCLIGYGASMLLMERLMISSDGFKADVCQGCRMLGY------EGWCPSCNSPDKVAS 1149

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            +++PYACKLL QELQ MNIVPRL L E 
Sbjct: 1150 IRIPYACKLLFQELQGMNIVPRLTLKET 1177


>gi|119618187|gb|EAW97781.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_b
            [Homo sapiens]
          Length = 1177

 Score = 1276 bits (3302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1198 (53%), Positives = 831/1198 (69%), Gaps = 95/1198 (7%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVT +   VK        +G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTRTNMAVK--------QGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 241

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 242  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 301

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 302  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 360

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 361  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 419

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 420  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 479

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG---- 551
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG    
Sbjct: 480  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGGYII 539

Query: 552  --LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL----- 604
               ++  H++     +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CR +     
Sbjct: 540  ETCVIRDHKK---LVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRYICRLLK 596

Query: 605  -VIADKGISRIKEHHMKELLDGVRS-----------FDDFLREGLIEYLDVNEENNALIA 652
             V  +  I  ++ + +  + + V +           F+DFL E L+EYLDVNEEN+  IA
Sbjct: 597  RVFKNLFIFALERNRLVFIFETVLTSFIVKINLIPNFEDFLHESLVEYLDVNEENDCNIA 656

Query: 653  LYEGD--------------------------------ATPDTTHIEIEPFTILGVIAGLI 680
            LYE                                  AT DTTH+EIEPFT+LGV AGLI
Sbjct: 657  LYEHTINKLECSGMISAHCNLRLPGSSNSPASASQVAATTDTTHLEIEPFTLLGVCAGLI 716

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ ++K
Sbjct: 717  PYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEK 776

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D+++ 
Sbjct: 777  LPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMG 836

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +     
Sbjct: 837  P--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNV 889

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
                +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSSRHGQ
Sbjct: 890  PQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQ 947

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG+A
Sbjct: 948  KGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTA 1007

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            FG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLD
Sbjct: 1008 FG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLD 1062

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            KMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV 
Sbjct: 1063 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVD 1122

Query: 1101 VCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL++
Sbjct: 1123 VCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1174


>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score = 1276 bits (3301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1153 (55%), Positives = 828/1153 (71%), Gaps = 42/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KLA  + +V DK+ LLP FLKV+GLVKQHLDSFN+FV+  ++KIV+AN+ ++S +DP  
Sbjct: 27   KKLADEINTVDDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIVQANELVLSDVDPDF 86

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    K  M K 
Sbjct: 87   YLKYLDIRVGHKSTSSPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRG---RKIIMHK- 142

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIML+S +C+L G ++ ++A+L ECP+DPGGYFI+ GTEKV+LIQEQLSKNR+
Sbjct: 143  DLEIGRMPIMLKSNKCILDGINDHQMAKLDECPIDPGGYFIVNGTEKVILIQEQLSKNRI 202

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + +PI++++KA G+ SD
Sbjct: 203  IVEADEKKGIVQASVTSSTHERKSKTYVITKNEKIYLKHNSIGEDVPIVIILKAAGITSD 262

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G +P+Y  L   + EE A L+++TQ++AL Y+  +VK     G+P   +   
Sbjct: 263  LEILQLVCGSNPQYQDLFAVNFEEAARLEVFTQQQALNYVGKRVKTVRRAGAPKLSQLQE 322

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+A+M RR++  M N   +DD+DYVGNKRLEL+GQ
Sbjct: 323  GIEAIATTIIAHITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQ 382

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D IL KPSR+S FD  LS  I  ++IT+G+ R +STGN+
Sbjct: 383  LMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINIHSNNITMGMNRAISTGNW 442

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 443  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDT 502

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+ S+C+ LG ED+  +    LH   +F +  NG 
Sbjct: 503  PEGEACGLVKNLALMTHITTDDEEEPIRSVCFALGCEDILEVDSATLHADGNFGIYLNGT 562

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-KGI 611
            I+G  R P  F    R LRR+GK+  F+S+  N  Q  V IA+DGGRVCRPL+I D K  
Sbjct: 563  IIGTTRFPAQFVGNFRALRRSGKVSPFISIHTNTHQNAVQIATDGGRVCRPLIIVDSKNK 622

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--ATPDTTHIEIEP 669
            + +K  H+K+L+ G   F+DF++ GL+EYLDVNEEN++ IALYE D  A  + TH+EIEP
Sbjct: 623  ANVKAVHLKKLMAGEWVFEDFIKHGLVEYLDVNEENDSFIALYERDLEANQNITHLEIEP 682

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++ 
Sbjct: 683  FTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVK 742

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V++K T   ++
Sbjct: 743  TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKR 802

Query: 790  YANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            Y N T D +  +R D  G       +  H++     L  DGL   G  ++   VY+NK  
Sbjct: 803  YPNHTKDVVSGMRVDEQGE-----PIFPHAS-----LGPDGLGEVGMKVENGQVYVNKCV 852

Query: 848  PLETRGSIMSPT----GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
            P     S++        Q    +R     Y+GP  E   +D+V +    N    IK L+R
Sbjct: 853  PTNASESVLGANEPHHQQNVESHRETPAYYRGP--EPSYIDQVMMSVSDNDQTLIKVLLR 910

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL
Sbjct: 911  QTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIEL 970

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G   YG+ FG        +E +SE LVK+GF+Y+GKDM+YSGITG  LQAY
Sbjct: 971  ISGKAGVLNGSLEYGTCFG-----GSKLEDMSEILVKNGFNYSGKDMLYSGITGECLQAY 1025

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS
Sbjct: 1026 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1085

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD FEV VC  CGL+GY +       C++CK+ +N+  M +PYA KLL Q
Sbjct: 1086 QLLLERLMLSSDAFEVDVCNNCGLMGYNSW------CTSCKSSENVIKMTIPYAAKLLFQ 1139

Query: 1144 ELQSMNIVPRLKL 1156
            EL SMNI PRLKL
Sbjct: 1140 ELLSMNIAPRLKL 1152


>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
            hordei]
          Length = 1169

 Score = 1275 bits (3300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1159 (55%), Positives = 836/1159 (72%), Gaps = 49/1159 (4%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KSV DK++L+P FL+V+GLVKQH++S+NYFV+  ++ I++AN++I S IDP  +L
Sbjct: 39   LMDPIKSVEDKWELVPAFLQVKGLVKQHIESYNYFVDHDLKNIIKANEKITSDIDPKFYL 98

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G+P     D +   + P  CRL D+TY+A I VNIEY +G       + + +V
Sbjct: 99   KYTDITVGEPRRYDGDALQRPITPQECRLRDITYSAHIFVNIEYTRGG----KIIRRKNV 154

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGRIP+MLRS +CVL  K E ELA++ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 155  AIGRIPVMLRSNKCVLSNKSEKELAKMSECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 214

Query: 200  DTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
            + D KKG+++ASVTSST   KSK+ +  + GK++L  N   + IPI V  KAMG+++D+E
Sbjct: 215  EADTKKGSVSASVTSSTHERKSKSYVLTKHGKIFLKHNSLHEDIPIAVAFKAMGIQADRE 274

Query: 259  VVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR---EGR 314
            ++Q+V G D  Y  L   ++EE A L IYT+++AL+Y+  + K S    P + R      
Sbjct: 275  ILQLVVGHDDIYKELFAINLEEAARLGIYTRKQALDYIGARAKASR--KPLSMRRPLSEE 332

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  +L  V +A+VPV   NFRPK  Y+A M+RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 333  ALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLVAMQDEKKVDDRDYVGNKRLELAGQ 392

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLSTGNF 432
            L++LLFEDLFK   S+++  +D +L KP+R+  FD  +QF    D IT G  R +STGN+
Sbjct: 393  LLALLFEDLFKKFNSDLKINIDKVLKKPNRTVEFDAFNQFHFNGDYITAGFVRAISTGNW 452

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 453  SLKRFKMERAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 512

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLAL TH+TTD EE P+  L + LGVED+ LL+G EL+ P+S++V  NG 
Sbjct: 513  PEGEACGLVKNLALTTHITTDVEEEPIAKLAFTLGVEDVHLLTGAELYRPDSYIVYLNGN 572

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD--KG 610
            +LG  R P+ F    R+LRRAG I EFVS++ N   + VYIASDGGR+CRPL+I D   G
Sbjct: 573  VLGVTRFPQRFVMQFRRLRRAGHISEFVSIYTNSHHQTVYIASDGGRICRPLIIVDPVTG 632

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEP 669
              R+ + H+++L  G+R F+DFL  GL+EYLDVNEEN++ IALYE D  P  TTH+EIEP
Sbjct: 633  QPRVTDSHIQQLKAGIRCFNDFLHNGLLEYLDVNEENDSNIALYERDIKPRYTTHLEIEP 692

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FTILG +AGLIPYPHHNQSPR TYQCAMGKQA+  IA+NQ  R+D+LLYL+VYPQ+P++ 
Sbjct: 693  FTILGAVAGLIPYPHHNQSPRLTYQCAMGKQAVSAIAYNQFLRIDTLLYLMVYPQQPMVK 752

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            TRTI+L+GYDKL AGQNA VAVMS+SGYDIEDA+++NK+SLDRGFGRC  +KK + I +K
Sbjct: 753  TRTIDLIGYDKLPAGQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTILRK 812

Query: 790  YANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            Y N T DR+      + TG   +R            IL+ DG+A  GE ++  DV++NK+
Sbjct: 813  YPNGTHDRLADAPVDESTGKRQKRYD----------ILEADGIAGVGERVEQGDVFVNKQ 862

Query: 847  SPL----ETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            +P+     +  +IM  +        Y+SA  +YK P   +  VD+V +    +    IK 
Sbjct: 863  TPVNANDNSSAAIMIGASNAAASVAYKSAPLSYKPP--VSGYVDQVLITDTDSDQTLIKA 920

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            LIR TRRPELGDKFSSRHGQKGVCG IV QED PFS++GI PD+IMNPHGFPSRMTVGKM
Sbjct: 921  LIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFSDQGINPDIIMNPHGFPSRMTVGKM 980

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IELL GKAGV  G   YG+AFG        VE +S+ LV HG++Y GK+ + SGITG PL
Sbjct: 981  IELLSGKAGVITGNLQYGTAFG-----GSKVEDMSQILVDHGYNYGGKETLTSGITGQPL 1035

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            + Y++ GPIYYQ+LKHMV DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI Y
Sbjct: 1036 ECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGY 1095

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GA+ L+ ERLM+SSD F V  C+ CGL+GY       G C  C +G ++  + +PY  KL
Sbjct: 1096 GATQLLLERLMISSDAFTVHACQRCGLMGY------NGWCPFCGSGKHVVKLTIPYGTKL 1149

Query: 1141 LIQELQSMNIVPRLKLAEA 1159
            ++QEL +M +VPRL L +A
Sbjct: 1150 MLQELMAMQVVPRLILEDA 1168


>gi|290990263|ref|XP_002677756.1| predicted protein [Naegleria gruberi]
 gi|284091365|gb|EFC45012.1| predicted protein [Naegleria gruberi]
          Length = 1120

 Score = 1275 bits (3300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1136 (55%), Positives = 833/1136 (73%), Gaps = 37/1136 (3%)

Query: 39   LKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVS 98
            +KV+GL +QH+DSFNYF+N  I+KIV+AN  I    D   ++++ D+ I +P +     +
Sbjct: 1    MKVKGLFRQHIDSFNYFINVDIKKIVQANSMITPDTDDKFYIKYNDIYIAKPRLDEGTDT 60

Query: 99   EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGK 158
             +L P +CRL D+TY+A I+V++EY Q    E T ++  D+ IGR+PIML+  RCVL GK
Sbjct: 61   IELTPQLCRLRDLTYSADIIVSVEYPQIVGNE-TLIKHEDLSIGRMPIMLQCDRCVLCGK 119

Query: 159  DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETV 218
            D+ ELA+LGECPLDPGGYFI+KG EKV LIQEQLSKNRVIID DK+  I ASVT ST   
Sbjct: 120  DDKELAKLGECPLDPGGYFIVKGVEKVCLIQEQLSKNRVIIDLDKEKQITASVTGSTHYR 179

Query: 219  KSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIE 278
            KSKT I ++  + YL  N F K IPI+++ KAMG+ESDQE+VQ++G D +Y   L PS E
Sbjct: 180  KSKTNIIIKHERFYLDHNSFTKDIPIIMLFKAMGIESDQEIVQLIGSDRKYIDALGPSFE 239

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTF-GSPPNDREGRAFSILRDVFLANVPVHNNNFRPK 337
            EC    +YT E+A+EY+   +K + F  + P   E R   IL ++ L ++PV+  N++ K
Sbjct: 240  ECIREGVYTSEQAIEYMSRYLKLADFRKNKPKMEETR--EILSNIILCHIPVYKFNYKMK 297

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDI 397
              Y+A+M++RM++A+ +   +DDKDY GNKRLE++GQL+SLLFEDLFK    E++KT++ 
Sbjct: 298  IVYLAIMVKRMIDALHDSANIDDKDYYGNKRLEMAGQLLSLLFEDLFKKFNDEIKKTLEK 357

Query: 398  ILSKPSRSSRF----DLSQFIVRDS--ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARL 451
               + SR +      D+S     +S  IT GL+ ++S+GN++V+RFKM R G+T VL+RL
Sbjct: 358  KTGRRSRRATSTPTEDISSIFNANSSKITEGLKNSISSGNWNVQRFKMERAGVTHVLSRL 417

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            SFI  LG MTR+S QFEK+RKVSGPRALQPSQWG+LCP DTPEGE CGLVKNLAL+THVT
Sbjct: 418  SFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGLLCPSDTPEGEGCGLVKNLALLTHVT 477

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
            TD+EE P+I L Y +GVED+ L+SGEEL++P+S++V  NGLILG HR P  F  + R +R
Sbjct: 478  TDDEEEPIIRLAYNIGVEDINLISGEELNHPSSYVVFLNGLILGIHRFPSQFTKLFRMMR 537

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD 631
            RAGKI EFVS+F N+  + +YIASDGGRVCRPL+I +    ++ + H+ EL +G+R++DD
Sbjct: 538  RAGKIHEFVSIFKNDLHKAIYIASDGGRVCRPLIIVENQKLKVTQKHLSELAEGIRTWDD 597

Query: 632  FLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
            FL+EGLIEYLDVNEENN+ I   E D   +TTH EIEPFTILGV AGL+PYPHHNQSPRN
Sbjct: 598  FLKEGLIEYLDVNEENNSNIVFREEDIKLETTHFEIEPFTILGVCAGLVPYPHHNQSPRN 657

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQCAMGKQAMG IA+NQ  R+D+LL L+VYPQ+P++ T+TIEL+ ++KL  GQNA++AV
Sbjct: 658  TYQCAMGKQAMGAIAYNQFNRLDTLLLLMVYPQKPMVKTKTIELIQFEKLSGGQNASIAV 717

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM 811
            MSYSGYDIEDA+V+NK+S+DRG+GRCI +KKY    ++Y N   D +L+P    P A++ 
Sbjct: 718  MSYSGYDIEDAVVVNKASIDRGYGRCIYLKKYVTELKRYHNGVED-VLQPP---PNAQQA 773

Query: 812  QVVHHSNL-LLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM--------SPTGQT 862
            + +    L     LD DG+ A GE I PND+YIN+     T+ +++        S  G  
Sbjct: 774  KDMDQKRLKSYQRLDFDGMCAVGERIYPNDMYINRFVAQNTQDNLLGMNTPTPSSSNGAA 833

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKN-GDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             + Y+ +   YKGP   +  VD+V +  + + G   +K+L+R TRRPELGDKFSSRHGQK
Sbjct: 834  ANTYKPSPIFYKGPC--SVYVDQVLITPNYDRGGYALKYLLRQTRRPELGDKFSSRHGQK 891

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            GVCG IV Q+D PF+E+GICPD+IMNPHGFPSRMTVGKMIEL+ GK+GV  G+  YG+AF
Sbjct: 892  GVCGLIVDQQDMPFNEQGICPDMIMNPHGFPSRMTVGKMIELICGKSGVLNGKQGYGTAF 951

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            G      D VE I + L++HGFSY+GKD++ SGITG  +  YI+ GP++YQ+LKHMVLDK
Sbjct: 952  G-----GDKVEDIGKGLIRHGFSYSGKDLLTSGITGETMSCYIYFGPVFYQRLKHMVLDK 1006

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            MHAR  GP  +LTRQP EGR++ GGLR+GEMERDCLI YGAS L+ ERLM+SSD ++V V
Sbjct: 1007 MHARSKGPVRILTRQPLEGRSKEGGLRLGEMERDCLIGYGASALLLERLMLSSDEYKVHV 1066

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            C  CG++GY       G C+ CK+  NIS + +PYA KLLIQELQ+MNI P+LKL+
Sbjct: 1067 CEDCGMIGY------MGYCNFCKSKQNISLLPMPYAFKLLIQELQAMNISPKLKLS 1116


>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1205

 Score = 1273 bits (3295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1157 (54%), Positives = 819/1157 (70%), Gaps = 45/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 69   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 128

Query: 79   FLRFKDVRIGQPSMTVD------GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
            ++RF D+ +G P    +        +  + P+ CRL DMTYA+PILV+ EYV+G    + 
Sbjct: 129  YIRFHDIYLGTPRRADEEQDSNFNAASTITPNECRLRDMTYASPILVDFEYVRG----RQ 184

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI+ GTEKV+L+QEQL
Sbjct: 185  RVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQL 244

Query: 193  SKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            SKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N   + +PI++++KAM
Sbjct: 245  SKNRVIVETDLKKEIVQASVTSSSNERKSKSYIILKKERIYVRHNVLNEDVPIVILLKAM 304

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G++SD+E++ +V G D  Y      + EE   L IYTQ +ALEY+  ++K     + FG 
Sbjct: 305  GIQSDKEMLLLVAGIDSTYQEDFAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGV 364

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYVGN
Sbjct: 365  IRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGN 424

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLE 424
            KRLEL+GQL+SLLFEDLFK    +++  +D +L KP R+ +FD    +    + IT G+ 
Sbjct: 425  KRLELAGQLLSLLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMN 484

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 485  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 544

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G ELH   +
Sbjct: 545  GMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGT 604

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            ++V  NG  +   RRPK F    R+LRR G++ EF+SVF+N  QR V+IA+D GR+CRPL
Sbjct: 605  YIVFLNGSPIALTRRPKFFLHSFRRLRRTGRVSEFISVFINHHQRAVHIATDDGRICRPL 664

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I + G SR++  H++ L  G   FDDFL  GL+EYLD NEEN++ IA+YE D    TTH
Sbjct: 665  IIVEDGKSRVQARHLRALRSGSMEFDDFLAHGLVEYLDCNEENDSNIAVYENDIVDSTTH 724

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ
Sbjct: 725  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQ 784

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ TRTIEL+ YD+L AGQ ATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+
Sbjct: 785  KPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYS 844

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + Y+N T D++  PDR       + V  H+     +LD+DGLAA GE +   +VYIN
Sbjct: 845  TNLKSYSNGTKDKLKGPDRENG----LPVRKHA-----LLDNDGLAAVGEKVNQGEVYIN 895

Query: 845  KESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K +P     S +  TG    R   Y  + QTYK PD     +D+V + S +  +  IK  
Sbjct: 896  KVTPENALSSGI--TGSDAGRPITYIPSPQTYKLPD--PSYIDKVMISSTEAENQLIKVQ 951

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TRRPE+GDKFSSRHGQKGV G I +Q D PFS+ GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 952  TRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMNPHGFPSRMTVGKML 1011

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  LVKHGFSY GKD + SGITG  L 
Sbjct: 1012 ELVAGKAGILSGQFSYGTAFG-----GSPVEEMSAILVKHGFSYGGKDCLTSGITGESLP 1066

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1067 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1126

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD +EV VC  CG +GY      +G C  CK+   +  M +PYA KLL
Sbjct: 1127 TSQLLLERLMISSDQYEVDVCESCGFMGY------SGWCQRCKSSRGVVKMIIPYAAKLL 1180

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1181 VQELFSMNVVARLKLAD 1197


>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1165

 Score = 1273 bits (3294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1157 (55%), Positives = 831/1157 (71%), Gaps = 42/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI++AN+ ++S +DP  
Sbjct: 32   KKLTDKINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDPEF 91

Query: 79   FLRFKDVRIG--QPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            +L++ D+R+G    + T  G+S+++N  PH CRL D+TY+API V++EY +G    +  +
Sbjct: 92   YLKYLDIRVGCKSSTSTAKGLSKEVNLVPHDCRLRDLTYSAPIYVDVEYTRG----RKII 147

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
               D+ IGR+PIMLRS +C+L G D+ ++A+  ECPLDPGGYFI+ GTEKV+L+QEQLSK
Sbjct: 148  VHRDLEIGRMPIMLRSNKCLLDGIDDKKMAKYDECPLDPGGYFIVNGTEKVILVQEQLSK 207

Query: 195  NRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
            NR+I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + +PI++++KA G+
Sbjct: 208  NRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDVPIVIILKAAGI 267

Query: 254  ESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDR 311
             SD E++Q+V G DP Y  L   + EE A L+I+TQ++AL Y+  +VK     G+P   +
Sbjct: 268  TSDLEILQLVCGNDPNYQDLFAINFEEAAKLEIFTQQQALHYVGKRVKTIRRAGAPKLSQ 327

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
                   +    +A++ V +  FR K  Y+A+M RR++  M N   +DD+DYVGNKRLEL
Sbjct: 328  LQEGIEAIATTIIAHITVSDLQFREKALYIAMMTRRVLMTMENPKMVDDRDYVGNKRLEL 387

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLST 429
            +GQL+SLLFEDLFK   S+ +  +D IL KPSR+S FD  LS  I  ++IT+G+ R +ST
Sbjct: 388  AGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINIHSNNITMGMNRAIST 447

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC 
Sbjct: 448  GNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCT 507

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TTD+EE P+  LC+ LG ED+  +    LH   ++ +  
Sbjct: 508  SDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCFILGCEDILEVDSASLHAKGNYGIYL 567

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ++G  R P  F    R LRR GKI  F+S++ N  Q  V+IA+DGGR+CRPL+I DK
Sbjct: 568  NGTLIGTTRFPAKFVGDFRNLRRTGKISAFISIYTNSHQSAVHIATDGGRICRPLIIVDK 627

Query: 610  -GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT----TH 664
              +S++K  H+ +L     +FDDFL+ GL+EYLDVNEEN++LIA+YE D +  T    TH
Sbjct: 628  NNVSKVKAKHLLKLQRDEWAFDDFLKHGLVEYLDVNEENDSLIAIYERDLSDSTKSNITH 687

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +E+EPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYL+VYPQ
Sbjct: 688  LEVEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQ 747

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V++K T
Sbjct: 748  QPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKNT 807

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               ++Y N T D IL   R     E   +  HS+     L  DGL   G  ++   VY+N
Sbjct: 808  ITLKRYPNHTKD-ILSGMRVDENNE--PIPPHSS-----LGPDGLGEVGMKLENGQVYVN 859

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQT---YKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K  P     ++++  G  +    S R+T   YKGP  E   VD+V +    N    IK L
Sbjct: 860  KCVPTNAGETVLNGPGANEQPAESHRETPAYYKGP--EPSYVDQVMMSVSDNDQALIKVL 917

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMI
Sbjct: 918  LRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMI 977

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAGV  G   YG+ FG        ++ +SE LV++GF+Y+GKDM+YSGITG  LQ
Sbjct: 978  ELISGKAGVLNGTLEYGTCFG-----GSDLQDMSEILVQNGFNYSGKDMLYSGITGECLQ 1032

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AYIF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYG
Sbjct: 1033 AYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYG 1092

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            AS L+ ERLM+SSD FEV VC  CGL+G+ N       C++C + +++  M +PYA KLL
Sbjct: 1093 ASQLLLERLMLSSDAFEVDVCNKCGLMGHNNW------CTSCNSSEHVIKMTIPYAAKLL 1146

Query: 1142 IQELQSMNIVPRLKLAE 1158
             QEL SMNI PRL+L +
Sbjct: 1147 FQELISMNIAPRLRLGD 1163


>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
          Length = 1152

 Score = 1273 bits (3294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/1156 (54%), Positives = 827/1156 (71%), Gaps = 44/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDP 76
            + L   +KSV DK+ LLP FL V+GLVKQH+DS+N+ V+  +R IV   AN R+VS +DP
Sbjct: 23   KSLTDEIKSVEDKWHLLPAFLAVKGLVKQHIDSYNHLVDVELRAIVLSEANRRVVSDVDP 82

Query: 77   SIFLRFKDVRIGQPS-MTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            + FL + D+ +G P  + ++G+  K L P  CRL DMTYAAPI V++ Y +GS   +  +
Sbjct: 83   NWFLEYTDIYVGSPERLQMNGLIHKPLTPQECRLRDMTYAAPIYVDVIYAKGS---RNVV 139

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K  + IGRIP+MLRS +CVL+ KD  ++  L ECPLDPGGYF++KGTEKV+L+QEQLSK
Sbjct: 140  SKKQL-IGRIPVMLRSNKCVLWDKDPEQMQSLTECPLDPGGYFVVKGTEKVILVQEQLSK 198

Query: 195  NRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            NRV+++ D +G    I ASVTSST   KSKT +  +  K+ L  N   + +PI++ +KA+
Sbjct: 199  NRVLVENDGRGPSKGIIASVTSSTLERKSKTYVAEKSKKIVLRHNSLHEDVPIVIALKAL 258

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPND 310
            G+  D E++ +V G  P        + E+   L IYT+ +ALEY+  +VK S   +P  +
Sbjct: 259  GIVGDHEIMLLVCGTSPELRERFAINFEDSTRLGIYTRTQALEYVGHRVKLSKRVAPGGN 318

Query: 311  REGR------AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
               R      A  +L  + LA+VPV N NFRPK  Y+A+M+RR++ AML+    DD+DYV
Sbjct: 319  NFVRRPVAEEALELLATLVLAHVPVENLNFRPKAIYMALMIRRVLAAMLDPTMTDDRDYV 378

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD--SITVG 422
            GNKRLEL+GQL+SLLFEDLFK    + +  VD +L KPSR++ FD  + +     SIT G
Sbjct: 379  GNKRLELAGQLLSLLFEDLFKLFNRDFKTNVDKMLKKPSRTNEFDGLKVLSMQTGSITDG 438

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
              R ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPRALQ S
Sbjct: 439  FVRAIATGNWSLKRFRMERAGITHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQAS 498

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
            QWGMLCP DTPEGEACGLVKNLALMTH+TTD EE  L  L Y LG+ED+  ++G EL+ P
Sbjct: 499  QWGMLCPSDTPEGEACGLVKNLALMTHITTDVEETSLWRLAYVLGLEDVCNVTGTELYAP 558

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
             +F+V  NG++LG  + P+ F    R  RRAG+I EFVS+++N +Q  ++IASDGGR+CR
Sbjct: 559  GTFVVYLNGVLLGLTQEPRVFTQRFRAFRRAGEISEFVSIYINTQQAAIHIASDGGRICR 618

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            P++I D+G  R+ + H+  L   +++FDDFL+EGLIEYLDVNEEN+A IALYE D    T
Sbjct: 619  PMIIVDRGRPRVTDAHIAALRASMKTFDDFLKEGLIEYLDVNEENDAHIALYERDIKKFT 678

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VY
Sbjct: 679  THLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQLARIDTLLYLMVY 738

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQRPL+TT+TIELV YD+L AGQNA VAVMS+SGYDIEDA+++N++S+DRGFGRC V +K
Sbjct: 739  PQRPLVTTKTIELVKYDQLPAGQNAMVAVMSFSGYDIEDALILNRASVDRGFGRCQVFRK 798

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            Y+   ++Y N+T DR+  P    P ++R +           +D DGL A G+ +K  D+Y
Sbjct: 799  YSTYIKQYPNNTHDRLADP--PPPDSDRHRKYK--------VDADGLPAVGDRVKEGDIY 848

Query: 843  INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            +NK++P     +  S      S +R A  TY+        +D+V L   +NG   +K L+
Sbjct: 849  VNKQTPSNATDN-SSTASSMPSHWRDAVMTYRA--NMNGHIDKVMLSDMENGTQLVKILM 905

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPELGDKFSSRHGQKGVCG IV QED PF+++GICPD+IMNPHGFPSRMTVGKM+E
Sbjct: 906  RQTRRPELGDKFSSRHGQKGVCGLIVPQEDMPFTDQGICPDIIMNPHGFPSRMTVGKMLE 965

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            LL GKAG+  G+F YG+AFG         E +S  L++ G+SY GKD + SGITG  L++
Sbjct: 966  LLSGKAGILGGKFEYGTAFG-----GSKAEDMSRALIQAGYSYAGKDYLTSGITGQALES 1020

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPI+YQKLKHMV+DKMHAR  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIA+GA
Sbjct: 1021 YVFFGPIFYQKLKHMVIDKMHARSRGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAHGA 1080

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERLM+SSD FEV VC+ CG +GY       G C+ CK+GD +  + LPYA KLL 
Sbjct: 1081 SHLLLERLMLSSDAFEVDVCQSCGFMGY------NGWCAHCKSGDKVVKLMLPYASKLLF 1134

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL +MNI PRL L +
Sbjct: 1135 QELLAMNIAPRLVLED 1150


>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
          Length = 1155

 Score = 1272 bits (3292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1153 (55%), Positives = 819/1153 (71%), Gaps = 41/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI++AN+ ++S +DP  
Sbjct: 29   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+R+G  S T +     + PH CRL D+TY+API V++EY +G    +  +   D
Sbjct: 89   YLKYLDIRVGHRSKTPNDKLVLMPPHQCRLRDLTYSAPIFVDVEYTRG----RKIIVHTD 144

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            + IGR+PIMLRS +C+L G D+  +AR  ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 145  LEIGRMPIMLRSNKCILDGADDNTMARYDECPLDPGGYFIVNGTEKVILVQEQLSKNRII 204

Query: 199  IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + IPI++++KA G+ SD 
Sbjct: 205  VEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIILKAAGITSDL 264

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGRA 315
            E++Q+V G DP Y  L + + EE A L+++TQ++AL Y+  +VK     G+P   +    
Sbjct: 265  EILQLVCGSDPNYQDLFVVNFEEAARLEVFTQQQALNYVGKRVKTIRRAGAPKLSQLQEG 324

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               +    +A++ V +  F+ K  Y+A M RR++  M N   +DD+DYVGNKRLEL+GQL
Sbjct: 325  IEAIATTIIAHLTVSDLQFKEKALYIATMARRVIMTMHNPTMVDDRDYVGNKRLELAGQL 384

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
            +SLLFEDLFK   S+ +  +D +L KPSR+S FD  LS  I  ++IT+GL R +STGN+ 
Sbjct: 385  MSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINIHSNNITMGLNRAISTGNWS 444

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTP
Sbjct: 445  LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTP 504

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TTD+EE P+  LCY LG E +  +    LH+  +F +  NG +
Sbjct: 505  EGEACGLVKNLALMTHITTDDEELPIKKLCYMLGCEPILGVDSATLHDEGNFGIHVNGTL 564

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G  R P  F +  RKLRR GK+  F+S+  N  Q+ V+IA+DGGR+CRPL+I + G S+
Sbjct: 565  VGTTRFPGKFVENFRKLRRTGKVSAFISIHTNTHQQAVHIATDGGRICRPLIIVENGKSK 624

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD---TTHIEIEPF 670
            +   H+ +L  G  +FDDFL  GL+EYLDVNEEN++LIALYE +   +   TTH+EIEPF
Sbjct: 625  VTAEHLLKLKKGEWAFDDFLVHGLVEYLDVNEENDSLIALYEENINENSVPTTHLEIEPF 684

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            T+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY +VYPQ+P++ T
Sbjct: 685  TVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKT 744

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC VV+K T   ++Y
Sbjct: 745  KTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVVRKNTIQLKRY 804

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLL--LILDDDGLAAPGEIIKPNDVYINKESP 848
             N T D +            M+V  H N +     L  DGL   G  I+   +Y NK  P
Sbjct: 805  PNHTKDIL----------SGMRVDEHGNPIFPHQALGPDGLGEVGARIENGQIYANKFVP 854

Query: 849  LETRGSIMSPTGQTDSRYRSARQT---YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
                 S +    +  +   S R+T   YKGP  E   VD+V +    N    IK L+R T
Sbjct: 855  TNAGESALGGASEP-TNVESHRETPAYYKGP--EPSYVDQVMMSVSDNDQALIKVLLRQT 911

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL+ 
Sbjct: 912  RRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDMGISPDIIMNPHGFPSRMTVGKMIELIS 971

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GKAGV  G   YG+ FG        +E +S+ LV  GFSY+GKDM+YSGITG  LQAYIF
Sbjct: 972  GKAGVLNGTLEYGTCFG-----GSKLEDMSKILVDKGFSYSGKDMLYSGITGECLQAYIF 1026

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
             GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L
Sbjct: 1027 FGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQL 1086

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERLM+SSD FEV +C  CGL+GY +       C+TCK+ +NI  M +P A KLL QEL
Sbjct: 1087 LLERLMISSDAFEVDICNKCGLMGYNSW------CTTCKSSENIIKMTIPCAAKLLFQEL 1140

Query: 1146 QSMNIVPRLKLAE 1158
             SMNI PRL+L +
Sbjct: 1141 LSMNIAPRLRLGD 1153


>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
          Length = 1142

 Score = 1271 bits (3289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1146 (54%), Positives = 817/1146 (71%), Gaps = 42/1146 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KL   + +  DK+ LLP FLKV+GLVKQHLDSFNYFV+  ++KI++AN+ I+S +DP  
Sbjct: 29   KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEF 88

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            +L++ D+R+G        +     PH CRL DMTY+ PI V+IEY +G    ++ +   D
Sbjct: 89   YLKYIDIRVGYKHNGNKAIMTP--PHECRLRDMTYSTPIFVDIEYTRG----RSIVLHRD 142

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V IGR+PIMLRS +C+L G  E ++A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I
Sbjct: 143  VEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 202

Query: 199  IDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++ D+K NI  ASVTSST   KSKT +  +  K+YL  N   +++PI+VV+KA G+ SD 
Sbjct: 203  VEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDL 262

Query: 258  EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            E++Q+V G D  Y  +   ++EE A L IYTQ++ALE++  KVK          +EG   
Sbjct: 263  EIMQLVCGNDSSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSILQEG--I 320

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              +    +A++ V   +FR K  Y+A+M RR+V A+ N   +DD+DYVGNKRLEL+GQL+
Sbjct: 321  EAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLM 380

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
            SLLFEDLFK   ++ +  +D +L KP+R+  +D  L+  +  ++IT G+ R +STGN+ +
Sbjct: 381  SLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMNRAISTGNWSL 440

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPE
Sbjct: 441  KRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPE 500

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD+EE P+  +CY LGVED+ L+    +H   ++ V  NG I+
Sbjct: 501  GEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHL--NYGVYLNGTII 558

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R P  F    R LRR G+  EF+S++ N  Q+ V+IA+DGGR+CRPL+I   G S +
Sbjct: 559  GTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIVSNGQSSV 618

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H++ LL G   FDDFL+ GL+EYLDVNEEN++ IALYE D + + TH+EIE FT+LG
Sbjct: 619  TADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENITHLEIESFTVLG 678

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL++YPQ+P++ T+TIE
Sbjct: 679  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE 738

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC   +K T + ++Y N T
Sbjct: 739  LIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHT 798

Query: 795  SDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             D I  +R D  G    + Q           L  DGL   G  ++   +Y+NK  P    
Sbjct: 799  QDIIGGMRVDENGEPIWQHQA----------LGPDGLGEVGMKVESGQIYVNKSVPTNAS 848

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
             SI++   QT ++Y+     Y+ P  E   +D+V +    N    IK L+R  RRPELGD
Sbjct: 849  DSILT---QTQAQYKETPVVYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGD 903

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IV+QED PF+++G+ PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  
Sbjct: 904  KFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLN 963

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+ FG        +E +S+ LV +GF+Y+GKDM+YSGITG  LQAYIF GPIYYQ
Sbjct: 964  GTLEYGTCFG-----GSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQ 1018

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+
Sbjct: 1019 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLML 1078

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VC  CGL+GY      +G C++CK  +++  M +PYA KLL QEL +MNI P
Sbjct: 1079 SSDAFEVDVCEKCGLMGY------SGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAP 1132

Query: 1153 RLKLAE 1158
            RLKL +
Sbjct: 1133 RLKLGD 1138


>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score = 1270 bits (3286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1153 (55%), Positives = 826/1153 (71%), Gaps = 42/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +KLA  + +V DK+ LLP FLKV+GLVKQHLDSFN+FV+  ++KIV+AN+ ++S +DP  
Sbjct: 27   KKLADEINTVDDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIVQANELVLSDVDPDF 86

Query: 79   FLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ D+R+G  S +  G  E  L PH CRL D+TY+API V++EY +G    K  M K 
Sbjct: 87   YLKYLDIRVGHKSTSSPGTKEVILPPHECRLRDLTYSAPIYVDVEYTRG---RKIIMHK- 142

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            D+ IGR+PIML+S +C+L G ++ ++A+L ECP+DPGGYFI+ GTEKV+LIQEQLSKNR+
Sbjct: 143  DLEIGRMPIMLKSNKCILDGINDHQMAKLDECPIDPGGYFIVNGTEKVILIQEQLSKNRI 202

Query: 198  IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            I++ D KKG + ASVTSST   KSKT +  +  K+YL  N   + +PI++++KA G+ SD
Sbjct: 203  IVEADEKKGIVQASVTSSTHERKSKTYVITKNEKIYLKHNSIGEDVPIVIILKAAGITSD 262

Query: 257  QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDREGR 314
             E++Q+V G +P+Y  L   + EE A L+++TQ++AL Y+  +VK     G+P   +   
Sbjct: 263  LEILQLVCGSNPQYQDLFAVNFEEAARLEVFTQQQALNYVGKRVKTVRRAGAPKLSQLQE 322

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                +    +A++ V +  FR K  Y+A+M RR++  M N   +DD+DYVGNKRLEL+GQ
Sbjct: 323  GIEAIATTIIAHITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQ 382

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L+SLLFEDLFK   S+ +  +D IL KPSR+  FD  LS  I  ++IT+G+ R +STGN+
Sbjct: 383  LMSLLFEDLFKKFNSDFKANIDKILKKPSRALEFDALLSINIHSNNITMGMNRAISTGNW 442

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DT
Sbjct: 443  SLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDT 502

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD+EE P+  +C+ LG ED+  +    LH   +F +  NG 
Sbjct: 503  PEGEACGLVKNLALMTHITTDDEEEPIRLVCFALGCEDILEVDSATLHADGNFGIYLNGT 562

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-KGI 611
            I+G  R P  F    R LRR+GK+  F+S+  N  Q  V IA+DGGRVCRPL+I D K  
Sbjct: 563  IIGTTRFPAQFVGNFRALRRSGKVSPFISIHTNTHQNAVQIATDGGRVCRPLIIVDSKNK 622

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--ATPDTTHIEIEP 669
            + +K  H+K+L+ G   F+DF++ GL+EYLDVNEEN++ IALYE D  A  + TH+EIEP
Sbjct: 623  ANVKAVHLKKLMAGEWVFEDFIKHGLVEYLDVNEENDSFIALYERDLEANQNITHLEIEP 682

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++ 
Sbjct: 683  FTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVK 742

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+TIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V++K T   ++
Sbjct: 743  TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKR 802

Query: 790  YANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            Y N T D +  +R D  G       +  H++     L  DGL   G  ++   VY+NK  
Sbjct: 803  YPNHTKDVVSGMRVDEQGE-----PIFPHAS-----LGPDGLGEVGMKVENGQVYVNKCV 852

Query: 848  PLETRGSIMSPT----GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
            P     S++        Q    +R     Y+GP  E   +D+V +    N    IK L+R
Sbjct: 853  PTNASESVLGANEPHHQQNVESHRETPAYYRGP--EPSYIDQVMMSVSDNDQTLIKVLLR 910

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPELGDKFSSRHGQKGVCG IVQQED PF++ GI PD+IMNPHGFPSRMTVGKMIEL
Sbjct: 911  QTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIEL 970

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G   YG+ FG        +E +SE LVK+GF+Y+GKDM+YSGITG  LQAY
Sbjct: 971  ISGKAGVLNGSLEYGTCFG-----GSKLEDMSEILVKNGFNYSGKDMLYSGITGECLQAY 1025

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IF GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS
Sbjct: 1026 IFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGAS 1085

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD FEV VC  CGL+GY +       C++CK+ +N+  M +PYA KLL Q
Sbjct: 1086 QLLLERLMLSSDAFEVDVCNNCGLMGYNSW------CTSCKSSENVIKMTIPYAAKLLFQ 1139

Query: 1144 ELQSMNIVPRLKL 1156
            EL SMNI PRLKL
Sbjct: 1140 ELLSMNIAPRLKL 1152


>gi|195381659|ref|XP_002049565.1| GJ20682 [Drosophila virilis]
 gi|194144362|gb|EDW60758.1| GJ20682 [Drosophila virilis]
          Length = 1137

 Score = 1270 bits (3286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1144 (54%), Positives = 825/1144 (72%), Gaps = 33/1144 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D ++ A P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I+KIVRAN+ + SG DP
Sbjct: 20   DSKEWAKPIKPLQEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRANEIVTSGADP 79

Query: 77   SIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
              +L++ DVR+G+P +  DG  +++   PH CRL D TY+API V+IEY +G+      +
Sbjct: 80   LFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPISVDIEYTRGTQR----I 134

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            ++N+++IGR+P+MLR   CVL GK E EL++L ECPLDPGGYF+++G EKV+LIQEQLS 
Sbjct: 135  KRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSW 194

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            N+++ + D  G +   VTSST   KS+T++  + GK YL  N     IPI+V+ KA+G+ 
Sbjct: 195  NKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVV 253

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SDQE++  +G D R       S+ E  NL ++TQ++AL+Y+  K+    F S  N     
Sbjct: 254  SDQEIMSHIGLDARSQNRFGASLLEAFNLKVFTQQRALDYMGSKLVVKRFQSATNKTPSE 313

Query: 315  -AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L    LA+VPV N NF+ K  YV++M+RR++ A L+K   DD+DY GNKRLEL+G
Sbjct: 314  EARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNKRLELAG 373

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
             L+SL+FEDLFK M  E++   D  + K  ++++FD+ + +    ITVGLE  +S+GN+ 
Sbjct: 374  SLISLMFEDLFKRMNWELKMIADKNIPK-VKAAQFDVVKHMRAAQITVGLESAISSGNWT 432

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTP
Sbjct: 433  IKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTP 492

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TT+ +E P+++L Y  GVED+  +SG  ++NP+ FLV  NG +
Sbjct: 493  EGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVEDIREVSGNPINNPHVFLVFINGNV 552

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            LG     +     +R +RR G++G FVS+  +  QRC++I +DGGR+CRP +I +K    
Sbjct: 553  LGLTINHRHLVHNLRYMRRKGRMGSFVSIHTSYTQRCIFIHTDGGRLCRPYIIVEKSRPL 612

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +++ H+ ELL GVR FDDFL +GLIEYLDVNEEN++ IA  E    P TTH+EIEPFT+L
Sbjct: 613  VQQRHLDELLRGVRKFDDFLHDGLIEYLDVNEENDSFIAWNEEHIEPHTTHLEIEPFTLL 672

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+Y LVYPQ P++ +RTI
Sbjct: 673  GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTI 732

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++YAN 
Sbjct: 733  ELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQ 792

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
            T DRI+ P +    A   +V+   +    +LD DG+ APGE +    + INKE P  T  
Sbjct: 793  TFDRIMGPVK---DALTNKVIFKHD----VLDTDGIVAPGEQVLNKQIMINKEMPAVT-- 843

Query: 854  SIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            SI    GQ+    Y +   +YKGP  E   ++RV + ++   D  IK L+R TR PE+GD
Sbjct: 844  SINPLEGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKILLRQTRIPEIGD 901

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV QED PF++ GICPD+IMNPHGFPSRMTVGK +ELLGGKAGV  
Sbjct: 902  KFSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLE 961

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+FHYG+AFG  S  AD    +   LV+HGF+Y GKD+ YSGITG PL+AYI+ GP+YYQ
Sbjct: 962  GKFHYGTAFGG-SKAAD----VQAELVRHGFNYMGKDLFYSGITGAPLEAYIYSGPVYYQ 1016

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+
Sbjct: 1017 KLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMI 1076

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VCR CG L Y         C  C++  ++S + +PYACKLL QEL SMN+VP
Sbjct: 1077 SSDAFEVDVCRTCGRLAY------CSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVP 1130

Query: 1153 RLKL 1156
            +L L
Sbjct: 1131 KLIL 1134


>gi|321468089|gb|EFX79076.1| hypothetical protein DAPPUDRAFT_305037 [Daphnia pulex]
          Length = 1134

 Score = 1268 bits (3282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1147 (54%), Positives = 816/1147 (71%), Gaps = 35/1147 (3%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D +KL  P+K+V +K++L+P FLK +GLVKQH+DS+NYF+N  I+KIV+AN+++VS  D 
Sbjct: 11   DLEKLLEPIKAVEEKWKLVPAFLKTKGLVKQHIDSYNYFINVDIKKIVKANEKVVSHSDQ 70

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEKLN-PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            + ++++ D+ +G+P    D    +L  PH CRL DMTY+AP+ V+IEY +G    +  + 
Sbjct: 71   TFYIKYLDIHVGKPDSIEDMNHSRLTTPHECRLRDMTYSAPVTVDIEYTRG----QQRIV 126

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +N + IGR+PIMLRS  C L G   AE+A+  ECP D GGYFI++G EKV+LIQEQ+SKN
Sbjct: 127  RNGIPIGRMPIMLRSSNCTLAGISPAEMAKKNECPYDCGGYFIVRGNEKVILIQEQMSKN 186

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+I++ D+KGN++  VTSST   K++T + + KGK YL  N F   IP+ +V KAMG+ S
Sbjct: 187  RMIVEQDRKGNMSCQVTSSTHGTKTRTNVVVNKGKYYLKQNSFQDDIPVAIVFKAMGIVS 246

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF-GSPPNDREGR 314
            DQE+VQM+G D R      PS+EEC    I+TQ++AL +L  K+++  F G P       
Sbjct: 247  DQEIVQMIGTDDRVMTSFAPSLEECVRASIFTQQQALGHLGNKLRQKRFFGGPKKTATEE 306

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A   L    LA+VPV N NF+ K  Y+A+M+RR+++A  +  ++DD+DY GNKRLEL+G 
Sbjct: 307  ARETLATTILAHVPVENFNFKAKAMYLALMIRRVIQAENDPTSVDDRDYYGNKRLELAGS 366

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            L+SLLFEDLFK M  E+++  D  + K  ++++FD+ + I  D IT GLE  +STGN+ +
Sbjct: 367  LLSLLFEDLFKRMNFELKQIADKNIPK-IKAAQFDVIKHIRTDHITNGLENAISTGNWTI 425

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRF+M R+G+TQ+L RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPE
Sbjct: 426  KRFRMDRQGVTQMLCRLSYISGLGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 485

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GE CGLVKNLALMTH+TT+ EE P+  +   +GVED+ L SGEE+ +P+ + V  NG IL
Sbjct: 486  GEGCGLVKNLALMTHITTEAEEEPISRIAQNMGVEDINLFSGEEISDPSIYTVFLNGNIL 545

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  +         +  RR G I  FVS++ + + R VYI+SDGGR+CRP +I  KG + +
Sbjct: 546  GLVKDYLRLIRYFKLARRHGFINAFVSIYPHFQTRSVYISSDGGRLCRPYIIVRKGKAAL 605

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
             + HM+EL D  R+F+DF+ +GLIEYLDVNEEN++ IA+YE D   +TTH+EIEPFT+LG
Sbjct: 606  TDKHMQELADSFRTFEDFIHDGLIEYLDVNEENDSNIAVYESDINEETTHLEIEPFTLLG 665

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V AGLIPYPHHNQSPRNTYQCAMGKQAMG IA NQ  R+D+LLY LVYP +P++ TRTIE
Sbjct: 666  VCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRIDTLLYNLVYPHKPMVKTRTIE 725

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ ++ L AGQNA VAVMSYSG+DIEDA V+NK+SLDRG+GRC+V K      ++Y N +
Sbjct: 726  LINFENLPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCLVYKNAKCALKRYNNQS 785

Query: 795  SDRILRPDRTGP---GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            SDR+      GP    A +  +  H      ILD DG AA G+ ++P  V INK  P   
Sbjct: 786  SDRV-----NGPILDAASKKPIWKHD-----ILDADGFAAVGQPVEPKQVLINKAMPTAP 835

Query: 852  RGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
              ++   +P       YR     YKG       V++V   S+      IK  +R TRRPE
Sbjct: 836  VVTVAPGAPAAVPLPEYRDVPIAYKG--AIPSYVEKVMFSSNAEEAHIIKIQLRQTRRPE 893

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGV   + +QED PF+E GICPD+IMNPHGFPSRMTVGK+IELL GKAG
Sbjct: 894  IGDKFSSRHGQKGVTALVAEQEDLPFTELGICPDVIMNPHGFPSRMTVGKLIELLAGKAG 953

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            +  G+FHYG+AFG        V+ +SE L+KHG++Y GK+ + SG TG  L AYI+ GP+
Sbjct: 954  LLEGKFHYGTAFG-----GSKVQDVSEELIKHGYNYQGKECMTSGTTGEQLSAYIYFGPV 1008

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMV+DKMHAR  GPR +LTRQPTEGRAR GGLR+GEMERDCLIAYG+SMLI ER
Sbjct: 1009 YYQKLKHMVMDKMHARSRGPRAVLTRQPTEGRAREGGLRLGEMERDCLIAYGSSMLILER 1068

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD F+V VC  CGL+GY+      G C  CK+  ++SS+++PYACKLL QELQ+MN
Sbjct: 1069 LMISSDAFDVDVCNQCGLMGYF------GWCHYCKSSASVSSIRIPYACKLLFQELQAMN 1122

Query: 1150 IVPRLKL 1156
            I PRLKL
Sbjct: 1123 IAPRLKL 1129


>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1204

 Score = 1268 bits (3281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1157 (54%), Positives = 817/1157 (70%), Gaps = 45/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 68   KSLTDPINTAEDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 127

Query: 79   FLRFKDVRIGQPSMTVD------GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
            ++RF D+ +G P    +       V+  + P+ CRL DMTYAAPILV+ EYV+G    + 
Sbjct: 128  YIRFHDIYLGNPRRADEEQDSKFDVASTITPNECRLRDMTYAAPILVDFEYVRG----RQ 183

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI+ GTEKV+L+QEQL
Sbjct: 184  RVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLHECPLDPGGYFIVNGTEKVILVQEQL 243

Query: 193  SKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            SKNRVI++TD KK  + ASVTSS+   KSK+ I M+K ++Y+  N   + +PI++++KAM
Sbjct: 244  SKNRVIVETDLKKEIVQASVTSSSNERKSKSYIIMKKDRIYMRHNVLNEDVPIVILLKAM 303

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G++SD+E++ +V G D  Y      + EE   L IYTQ +ALEY+  ++K     ++FG 
Sbjct: 304  GIQSDKEMLLLVAGIDSTYQEDFSINFEEAVKLGIYTQHQALEYIGSRIKINRKPNSFGI 363

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYVGN
Sbjct: 364  TRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGN 423

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  +D +L KP R+ +FD    +    + IT G+ 
Sbjct: 424  KRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMN 483

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 484  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 543

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G ELH   +
Sbjct: 544  GMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGA 603

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +++  NG  +   RRPK F +  R+LRR G++ EF+SVF+N  Q  V+IA+D GR+CRPL
Sbjct: 604  YIIFLNGSPIALTRRPKFFLNSFRRLRRTGRVSEFISVFINHHQNAVHIATDDGRICRPL 663

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            ++ + G S++ + H+  L  G   FDDFL  GL+EYLD NEEN++ IA+YE D T  TTH
Sbjct: 664  IVVEDGKSKVTKSHLWALRSGSMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITDSTTH 723

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ
Sbjct: 724  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQ 783

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ TRTIEL+ YDKL AGQ+ATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC V +KY+
Sbjct: 784  KPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRKYS 843

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + Y+N T D++  PDR       + +  H+     +LD DGLAA GE +   +VYIN
Sbjct: 844  TNLKSYSNGTKDKLKGPDRENG----LPIRKHA-----LLDSDGLAAVGEKVNQGEVYIN 894

Query: 845  KESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K +P     S +  TG    R   Y  + QTYK PD     +D+V + + +  +  IK  
Sbjct: 895  KVTPENALSSGI--TGSDAGRPIAYIPSPQTYKLPD--PSYIDKVMISATEAENQLIKVQ 950

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TR PE+GDKFSSRHGQKGV G I +  D PFS+ GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 951  TRQTRVPEVGDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDIIMNPHGFPSRMTVGKML 1010

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  LV HGFSY GKD + SGITG PL 
Sbjct: 1011 ELIAGKAGILSGQFGYGTAFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLP 1065

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1066 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1125

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1126 TSQLLLERLMISSDRHEVDVCESCGFMGYL------GWCQRCKTSRGVVKMVIPYAAKLL 1179

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1180 VQELFSMNVVARLKLAD 1196


>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
 gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
          Length = 1136

 Score = 1267 bits (3279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1144 (54%), Positives = 824/1144 (72%), Gaps = 34/1144 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D ++ + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I+KIVRAN+ + SG DP
Sbjct: 20   DNKEWSKPIKPLQEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRANEIVTSGADP 79

Query: 77   SIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
              +L++ DVR+G+P +  DG  +++   PH CRL D TY+API V+IEY +G+      +
Sbjct: 80   LFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPISVDIEYTRGTQR----I 134

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            ++N+++IGR+P+MLR   CVL GK E EL++L ECPLDPGGYF+++G EKV+LIQEQLS 
Sbjct: 135  KRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSW 194

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            N+++ + D  G +   VTSST   KS+T++  + GK YL  N     IPI+V+ KA+G+ 
Sbjct: 195  NKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVV 253

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK--VKRSTFGSPPNDRE 312
            SDQE++  +G D R       S+ E  NL I+TQ++AL+Y+  K  VKR    +     E
Sbjct: 254  SDQEIMAHIGLDARSQNRFGASLLEAFNLKIFTQQRALDYMGSKLVVKRFQSATTKTPSE 313

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A  +L    LA+VPV N NF+ K  YV++M+RR++ A L+K   DD+DY GNKRLEL+
Sbjct: 314  -EARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNKRLELA 372

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L+SL+FEDLFK M  E++   D  + K  ++++FD+ + +    IT GLE  +S+GN+
Sbjct: 373  GSLISLMFEDLFKRMNWELKMIADKNIPK-VKAAQFDVVKHMRAAQITAGLESAISSGNW 431

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DT
Sbjct: 432  TIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDT 491

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TT+ +E P+++L Y  GVED+  +SG  ++NP+ FLV  NG 
Sbjct: 492  PEGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVEDIREVSGNPINNPHVFLVFINGN 551

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +LG     +     +R +RR G++G FVS+  +  QRC++I +DGGR+CRP +I +    
Sbjct: 552  VLGLTINQRHLVRNLRYMRRKGRMGSFVSIHTSYTQRCIFIHTDGGRLCRPYIIVENQRP 611

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             +++ H+ EL+ GVR FDDFL +GLIEYLDVNEEN++ IA  E    P TTH+EIEPFT+
Sbjct: 612  LVQQRHLDELMRGVRKFDDFLHDGLIEYLDVNEENDSFIAWNEEQLEPHTTHLEIEPFTL 671

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+Y LVYPQ P++ +RT
Sbjct: 672  LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRT 731

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++YAN
Sbjct: 732  IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYAN 791

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DRI+ P +    A   +V+   +    +LD DG+ APGE ++   + INKE P  T 
Sbjct: 792  QTFDRIMGPVK---DALTNKVIFKHD----VLDTDGIVAPGEQVQNKQIMINKEMPAVT- 843

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
             SI    GQ+   Y +   +YKGP  E   ++RV + ++   D  IK L+R TR PE+GD
Sbjct: 844  -SINPLEGQSQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKILLRQTRIPEIGD 900

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV QED PF++ GICPD+IMNPHGFPSRMTVGK +ELLGGKAGV  
Sbjct: 901  KFSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLE 960

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+FHYG+AFG  S  AD    +   LV+HGF+Y GKD  YSGITG PL+AYI+ GP+YYQ
Sbjct: 961  GKFHYGTAFG-GSKAAD----VQAELVRHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQ 1015

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+
Sbjct: 1016 KLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMI 1075

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VCR CG L Y         C  C++  ++S + +PYACKLL QEL SMN+VP
Sbjct: 1076 SSDAFEVDVCRTCGRLAY------CSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVP 1129

Query: 1153 RLKL 1156
            +L L
Sbjct: 1130 KLIL 1133


>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1228

 Score = 1267 bits (3278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1157 (54%), Positives = 817/1157 (70%), Gaps = 45/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 92   KSLTDPINTAEDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 151

Query: 79   FLRFKDVRIGQPSMTVD------GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
            ++RF D+ +G P    +       V+  + P+ CRL DMTYAAPILV+ EYV+G    + 
Sbjct: 152  YIRFHDIYLGNPRRADEEQDSKFDVASTITPNECRLRDMTYAAPILVDFEYVRG----RQ 207

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI+ GTEKV+L+QEQL
Sbjct: 208  RVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLHECPLDPGGYFIVNGTEKVILVQEQL 267

Query: 193  SKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            SKNRVI++TD KK  + ASVTSS+   KSK+ I M+K ++Y+  N   + +PI++++KAM
Sbjct: 268  SKNRVIVETDLKKEIVQASVTSSSNERKSKSYIIMKKDRIYMRHNVLNEDVPIVILLKAM 327

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G++SD+E++ +V G D  Y      + EE   L IYTQ +ALEY+  ++K     ++FG 
Sbjct: 328  GIQSDKEMLLLVAGIDSTYQEDFSINFEEAVKLGIYTQHQALEYIGSRIKINRKPNSFGI 387

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYVGN
Sbjct: 388  TRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGN 447

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  +D +L KP R+ +FD    +    + IT G+ 
Sbjct: 448  KRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMN 507

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 508  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 567

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G ELH   +
Sbjct: 568  GMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGA 627

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +++  NG  +   RRPK F +  R+LRR G++ EF+SVF+N  Q  V+IA+D GR+CRPL
Sbjct: 628  YIIFLNGSPIALTRRPKFFLNSFRRLRRTGRVSEFISVFINHHQNAVHIATDDGRICRPL 687

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            ++ + G S++ + H+  L  G   FDDFL  GL+EYLD NEEN++ IA+YE D T  TTH
Sbjct: 688  IVVEDGKSKVTKSHLWALRSGSMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITDSTTH 747

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ
Sbjct: 748  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQ 807

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ TRTIEL+ YDKL AGQ+ATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC V +KY+
Sbjct: 808  KPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRKYS 867

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + Y+N T D++  PDR       + +  H+     +LD DGLAA GE +   +VYIN
Sbjct: 868  TNLKSYSNGTKDKLKGPDRENG----LPIRKHA-----LLDSDGLAAVGEKVNQGEVYIN 918

Query: 845  KESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K +P     S +  TG    R   Y  + QTYK PD     +D+V + + +  +  IK  
Sbjct: 919  KVTPENALSSGI--TGSDAGRPIAYIPSPQTYKLPD--PSYIDKVMISATEAENQLIKVQ 974

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TR PE+GDKFSSRHGQKGV G I +  D PFS+ GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 975  TRQTRVPEVGDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDIIMNPHGFPSRMTVGKML 1034

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  LV HGFSY GKD + SGITG PL 
Sbjct: 1035 ELIAGKAGILSGQFGYGTAFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLP 1089

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1090 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1149

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1150 TSQLLLERLMISSDRHEVDVCESCGFMGYL------GWCQRCKTSRGVVKMVIPYAAKLL 1203

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1204 VQELFSMNVVARLKLAD 1220


>gi|321471157|gb|EFX82130.1| hypothetical protein DAPPUDRAFT_316708 [Daphnia pulex]
          Length = 1135

 Score = 1266 bits (3276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1154 (53%), Positives = 818/1154 (70%), Gaps = 30/1154 (2%)

Query: 8    GSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN 67
            G  K +   D +KL  P+K+V +K++L+P FLK +GLVKQH+DS+NYF+N  I+KIV+AN
Sbjct: 2    GESKKDIYNDLEKLLEPIKAVEEKWKLVPAFLKTKGLVKQHIDSYNYFINVEIKKIVKAN 61

Query: 68   DRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLN-PHMCRLSDMTYAAPILVNIEYVQG 126
            ++++S  DP+ +L++ D+ +G+P    D    +L  PH CRL DMTY+AP+ V+IEY +G
Sbjct: 62   EKVISFADPTFYLKYLDIHVGKPDSIEDMHHSRLTTPHECRLRDMTYSAPVTVDIEYTRG 121

Query: 127  SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
                +  + +N + IGR+PIMLRS  C L G   AE+A+  ECP D GGYFI++G EKV+
Sbjct: 122  ----QQRVVRNGIAIGRMPIMLRSSNCTLAGILPAEMAKKNECPYDCGGYFIVRGNEKVI 177

Query: 187  LIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMV 246
            LIQEQ+SKNR+I++ D+KGN++  VTSST   K++T + M KGK YL  N F   IP+++
Sbjct: 178  LIQEQMSKNRMIVEQDRKGNMSCQVTSSTHGTKTRTNVIMNKGKYYLKQNSFQDDIPVVI 237

Query: 247  VMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF-G 305
              KAMG+ SDQE+VQM+G D        PS+EEC    I+TQ++AL +L  K+++  F G
Sbjct: 238  AFKAMGIVSDQEIVQMIGTDDHVMTSFAPSLEECVRASIFTQQQALNHLGKKLRQKRFFG 297

Query: 306  SPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
             P       A   L +  LA+VPV N NF+ K  Y+A+M+RR+++A  +  ++DD+DY G
Sbjct: 298  GPKKTPLDEAREALAETVLAHVPVLNFNFKAKAMYLALMIRRVIQAERDPTSVDDRDYYG 357

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLER 425
            NKR EL+G L+SLLFEDLFK M  E++   D  + K  ++++FD+ + I  D++T+GLE 
Sbjct: 358  NKRCELAGSLISLLFEDLFKRMNFELKSIADKNIPK-VKAAQFDVIKHIRTDTLTLGLEN 416

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R+G+TQ+L RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWG
Sbjct: 417  AIATGNWTIKRFRMERQGVTQMLCRLSYISGLGMMTRVNSQFEKTRKVSGPRSLQPSQWG 476

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLCP DTPEGE CGLVKNLALMTH+TT+ EE P+I +   +GVED+ L SGEE+ +P+ +
Sbjct: 477  MLCPSDTPEGEGCGLVKNLALMTHITTEAEEEPIIKIAQNMGVEDINLFSGEEISDPSIY 536

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             V  NG ILG  +         +  RR G I  FVS++ +   R VYI+ D GR+CRP +
Sbjct: 537  TVFLNGNILGLVKDYLRLIRYFKLARRHGFINAFVSIYPHFLTRSVYISCDSGRLCRPYI 596

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I  +G   + EHHM+EL D  R+F+DF+ +GL+EYLDVNEEN++ IA+YE D   +TTH+
Sbjct: 597  IVRQGRPAVTEHHMQELADSFRTFEDFIHDGLVEYLDVNEENDSNIAVYESDINEETTHL 656

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG IA NQ  R+D LLY LVYP +
Sbjct: 657  EIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRIDGLLYNLVYPHK 716

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIE+V ++ + AGQNA VAVMSYSG+DIEDA V+NK+SLDRG+GRCIV K    
Sbjct: 717  PMVKTRTIEMVNFENIPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCIVYKNAKC 776

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
            + ++Y N+TSDR+  P    P  ++    H       I+D DG A  G+ ++P  V INK
Sbjct: 777  VLKRYNNATSDRVNGP-MIDPVTKKPAWKHE------IIDIDGFACVGQPVQPKQVLINK 829

Query: 846  ESPLETRGSI---MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
              P     ++   +         YR    TYKGP      V++V   S+      IK  +
Sbjct: 830  IMPTVPAVAVTPGVPAAAAPLPEYRDVPITYKGPI--PSYVEKVMFSSNAEEANIIKIQL 887

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPE+GDKFSSRHGQKGV   + +QED PF+E GICPD+IMNPHGFPSRMTVGK+IE
Sbjct: 888  RQTRRPEIGDKFSSRHGQKGVTALVAEQEDLPFTELGICPDVIMNPHGFPSRMTVGKLIE 947

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            LL GKAG+  G+FHYG+AFG        V+ +SE L+KHGF+Y GK+ + SG TG  L A
Sbjct: 948  LLAGKAGLMEGKFHYGTAFG-----GSKVQDVSEELMKHGFNYQGKECMTSGTTGEQLTA 1002

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            YI+ GP+YYQKLKHMV+DKMHAR  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYG+
Sbjct: 1003 YIYFGPVYYQKLKHMVMDKMHARSQGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGS 1062

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            SMLI ERLM+SSD F V VC  CGL+GY+      G C  C++  ++SS+++PYACKLL 
Sbjct: 1063 SMLILERLMISSDAFNVDVCNQCGLIGYF------GWCHFCRSSASVSSLRIPYACKLLF 1116

Query: 1143 QELQSMNIVPRLKL 1156
            QELQSMNI PRLKL
Sbjct: 1117 QELQSMNIAPRLKL 1130


>gi|195024375|ref|XP_001985862.1| GH20856 [Drosophila grimshawi]
 gi|193901862|gb|EDW00729.1| GH20856 [Drosophila grimshawi]
          Length = 1137

 Score = 1266 bits (3276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1162 (54%), Positives = 830/1162 (71%), Gaps = 40/1162 (3%)

Query: 6    VEGSPKDEQLPDK-------QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNT 58
            VE +  D Q+ D        ++ +  +K + +K++L+P FL+V+GLVKQH+DSFN+F+N 
Sbjct: 2    VEANQSDAQMADSTWEPGDSKEWSKSIKPLQEKWKLVPAFLQVKGLVKQHIDSFNHFINV 61

Query: 59   GIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAP 116
             I+KIVRAN+ + SG DP  +L++ DVR+G+P +  DG  +++   PH CRL D TY+AP
Sbjct: 62   DIKKIVRANEIVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAP 120

Query: 117  ILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            I V+IEY +G+      +++N+++IGR+P+MLR   CVL GK E EL++L ECPLDPGGY
Sbjct: 121  ISVDIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGY 176

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLN 236
            F+++G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N
Sbjct: 177  FVVRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHN 235

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
                 IPI+V+ KA+G+ SDQE++  +G D R       S+ E  NL ++TQ++AL+Y+ 
Sbjct: 236  SMTDDIPIVVIFKALGVVSDQEIMTHIGLDARSQNRFGASLLEAFNLKVFTQQRALDYMG 295

Query: 297  GKVKRSTFGSPPNDREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
             K+    F S  N      A  +L    LA+VPV N NF+ K  YV++M+RR++ A L+K
Sbjct: 296  SKLVVKRFQSATNKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDK 355

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415
               DD+DY GNKRLEL+G L+SL+FEDLFK M  E++   D  + K  ++++FD+ + + 
Sbjct: 356  TLFDDRDYYGNKRLELAGSLMSLMFEDLFKRMNWELKMIADKNIPK-VKAAQFDVVKHMR 414

Query: 416  RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
               ITVGLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSG
Sbjct: 415  AAQITVGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSG 474

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E P+++L Y  GVED+  +S
Sbjct: 475  PRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVEDIREVS 534

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
            G  ++NP+ FLV  NG +LG     K     +R +RR G++G FVS+  +  QRC++I +
Sbjct: 535  GNPMNNPHVFLVFINGNVLGLTINQKHLVRNLRYMRRKGRMGSFVSIHTSYTQRCIFIHT 594

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            DGGR+CRP +I D     +++ H+ ELL G+R FDDFL +GLIEYLDVNEEN++ IA  E
Sbjct: 595  DGGRLCRPYIIVDNMRPLVEQRHLDELLRGIRKFDDFLHDGLIEYLDVNEENDSFIAWNE 654

Query: 656  GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                P TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DS
Sbjct: 655  EHIEPLTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDS 714

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L+Y LVYPQ P++ +RTIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+G
Sbjct: 715  LMYNLVYPQAPMVKSRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYG 774

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            RC+V K      ++YAN T DRI+ P +    A   +V+   +    +LD DG+ APGE+
Sbjct: 775  RCLVYKNSKCTVKRYANQTFDRIMGPVK---DALTNKVIFKHD----VLDTDGIVAPGEM 827

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNG 894
            ++   + INKE P  T  SI    GQ+    Y +   +YKGP  E   ++RV + ++   
Sbjct: 828  VQNKQIMINKEMPAVT--SINPLEGQSPQVPYTAVPISYKGP--EPSYIERVMVSANSEE 883

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
            D  IK L+R TR PE+GDKFSSRHGQKGV G IV QED PF++ GICPD+IMNPHGFPSR
Sbjct: 884  DFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDYGICPDMIMNPHGFPSR 943

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGK +ELLGGKAGV  G+FHYG+AFG  S  AD    +   LV+HGF+Y GKD  YSG
Sbjct: 944  MTVGKTLELLGGKAGVLEGKFHYGTAFGG-SKAAD----VQAELVRHGFNYMGKDFFYSG 998

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            ITG PL+AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMER
Sbjct: 999  ITGGPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMER 1058

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCLI+YGASMLI ERLM+SSD FEV VCR CG L Y         C  C++  ++S + +
Sbjct: 1059 DCLISYGASMLIMERLMISSDAFEVDVCRTCGRLAY------CSWCHFCQSSAHVSKISM 1112

Query: 1135 PYACKLLIQELQSMNIVPRLKL 1156
            PYACKLL QEL SMN+VP+L L
Sbjct: 1113 PYACKLLFQELTSMNVVPKLIL 1134


>gi|401889092|gb|EJT53032.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            2479]
          Length = 1213

 Score = 1266 bits (3275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1157 (54%), Positives = 824/1157 (71%), Gaps = 61/1157 (5%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR 81
            A  VKSV DK++LLP FLKV+GLVKQHLDSFNYFV+T I+ I+ AN  +VS  +P  ++R
Sbjct: 98   AKGVKSVQDKWELLPAFLKVKGLVKQHLDSFNYFVHTDIKAILHANALVVSDANPRYYIR 157

Query: 82   FKDVRIGQPSMTVDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            + D+RIG+P     G S  +L P  CRL+D TY+  I V+IEY   +H +K   ++  + 
Sbjct: 158  YTDIRIGRPLRKEVGSSNTRLTPMECRLTDNTYSGGIYVDIEY---THEDKIRKQQG-IH 213

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG +PIMLRS  C L GK++ ELAR+GECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+ 
Sbjct: 214  IGSLPIMLRSDLCHLAGKNDLELARMGECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVM 273

Query: 201  TDKKGNIN-ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            TD K ++  A VTSST     KT +  +  ++YL  + F + IPI++ +KAMG+ SD+E+
Sbjct: 274  TDPKKDVTTAEVTSSTHDRVVKTYVTTKASRLYLRHSSFKEPIPIVIALKAMGVTSDKEI 333

Query: 260  VQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---- 314
            +Q+V G D +Y      S+EE A L +YT+ +ALE++  +V      SP  ++E R    
Sbjct: 334  LQLVCGPDEKYQEAFGMSLEEAARLRVYTRREALEWIGARV------SPTQEKEDRSLGH 387

Query: 315  -------AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
                   A   L  + L +VPV + NFRPK  Y+A M RR++ AML+++ +DD+DYVGNK
Sbjct: 388  KLTPTDMAMQALAAMVLGHVPVRDMNFRPKAIYLATMSRRVLAAMLDENMVDDRDYVGNK 447

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR---DSITVGLE 424
            RLEL+GQL+SLLFED FKT  S+++K +D IL K +R+  FD S  +     D IT    
Sbjct: 448  RLELAGQLLSLLFEDSFKTFNSDLKKRMDKILEKKTRAGPFDASTLVRTGGGDIITSAFV 507

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R++STGN+ +KRF + R G+T VL+RLSFI  LG MTR++ QFEK+RKVSGPRALQPSQW
Sbjct: 508  RSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQW 567

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TTD  E PLI L + LG ED+ L +G EL+    
Sbjct: 568  GMLCPSDTPEGEACGLVKNLALMTHITTDVPEDPLIKLAFMLGAEDISLATGNELYRDGV 627

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
             LV  NG ++G    P+ F    RKLRR+G+  EFVS+++N  QR +YIASDGGR+CRPL
Sbjct: 628  HLVQVNGNLIGVTALPRKFVRTFRKLRRSGRTSEFVSIYINHHQRVIYIASDGGRICRPL 687

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I + G  R+   HM+ L  G  +FD FLR GL+EYLDVNEEN++ IA YE + T DTTH
Sbjct: 688  IIVENGRPRVTSEHMQLLKAGKVTFDHFLRSGLVEYLDVNEENDSFIACYESEITEDTTH 747

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+ YPQ
Sbjct: 748  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQ 807

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ T+TIELVGYD+L AGQNATVAVMSYSGYDIEDA+++N++S DRGFGRC V+KK T
Sbjct: 808  QPMVKTKTIELVGYDRLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQT 867

Query: 785  AINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
               + + N TS+R+  L PD      +R +   HS      LD DGL APG ++   DV 
Sbjct: 868  IPIRSFPNGTSERLAMLPPD------QRPET--HS-----WLDQDGLVAPGSVVSQGDVL 914

Query: 843  INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
              +E+P++TRG    PT      +++    +K P  E   +D+V +   ++G+  IK L 
Sbjct: 915  AARETPMDTRGP--GPT----VGFKATPVAHKLP--EPTNIDKVMVTDTEDGNQLIKILT 966

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPELGDKFSSRHGQKGVCG IV Q+D PF+++GICPD+IMNPHGFPSRMTVGKMIE
Sbjct: 967  RQTRRPELGDKFSSRHGQKGVCGLIVPQQDMPFNDQGICPDIIMNPHGFPSRMTVGKMIE 1026

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            LL GKAG+  G+  YG+AFG        V  +S+ L+  GFSY GKD + SGITG  L+ 
Sbjct: 1027 LLSGKAGLMAGKLQYGTAFG-----GSKVVDMSQILIDAGFSYAGKDTLTSGITGESLET 1081

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y++ GPIYYQKLKHMV+DKMHAR +GPR  LTRQPTEGR+++GGLR+GEMERDCLI YGA
Sbjct: 1082 YVYFGPIYYQKLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGA 1141

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            + L+ ERLM+SSD F+ QVC  CG+L Y      +G C  C++   +  + +PYA KLLI
Sbjct: 1142 TQLLLERLMISSDAFDAQVCETCGMLAY------SGWCKGCQSSKAVVKITMPYAAKLLI 1195

Query: 1143 QELQSMNIVPRLKLAEA 1159
            QEL  MNI+P+L + + 
Sbjct: 1196 QELIGMNILPKLVMEDT 1212


>gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis florea]
          Length = 1134

 Score = 1265 bits (3273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1157 (53%), Positives = 820/1157 (70%), Gaps = 29/1157 (2%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG M++    +   +  ++K    VK + DK++L+P FLK +GLVKQH+DSFNYF+N  I
Sbjct: 1    MGEMKINVHSR---IKSEEKFNKVVKHIQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEI 57

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILV 119
            +KIV+AN++++S  DP  ++++ +V +G P +     V+    PH CRL D+ Y+API V
Sbjct: 58   KKIVKANEKVLSDADPLFYVKYLNVHVGLPDVEEGFNVTRSTTPHECRLRDLNYSAPITV 117

Query: 120  NIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
            +IEY++G       + KN+++IGR+PIMLRS  CVL GK   ELA++ ECP DPGGYFI+
Sbjct: 118  DIEYIRGHQP----IIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKMNECPHDPGGYFIV 173

Query: 180  KGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFV 239
             G EKV+LIQEQ+ +NR+I++ D KG I AS  S T   K+KT I    G+ Y+  N F 
Sbjct: 174  NGQEKVILIQEQMLRNRIILEEDSKGCIVASCNSVTHERKTKTNIVGRAGRYYMRHNIFQ 233

Query: 240  KKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
              IP+ ++ KAMG+ SDQE++Q++G +  +     PS+EEC  L+++ Q +AL +L  K 
Sbjct: 234  DDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFAPSLEECHVLNVFAQNQALRFLSNKR 293

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
            K+  +    +         L    L++VPV + NF+ K  Y+A+M+R++++A  +   +D
Sbjct: 294  KQKRYSVIKSSITDEMKDALATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLVD 353

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+DY GNKRLEL+G L+SL+FEDLFK    E+++  D  + K  ++++FD+ + + +D I
Sbjct: 354  DRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQIADKNIPK-IKAAQFDIVKHMRQDQI 412

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            T GL   +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+L
Sbjct: 413  TNGLAFAISSGNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSL 472

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
            QPSQWGMLCP DTPEGE CGLVKNLALMTH+TT+ +E P+I L + LGVE++ +L GEE+
Sbjct: 473  QPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEI 532

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
            +N N ++V  NG ILG  +  +   +V R LRR G I  FVS++   + RC+ I+SDGGR
Sbjct: 533  NNKNVYMVFLNGNILGIVKNYQRLVNVFRLLRRKGLINGFVSIYTQHQHRCIQISSDGGR 592

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            +CRP +I   G   ++E H+K L  G+RSF+DFL++GLIEYLDVNEEN++ IA  E    
Sbjct: 593  LCRPYIIVQNGDPLVQEEHIKLLEQGIRSFEDFLQDGLIEYLDVNEENDSSIAFNESHIN 652

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
              TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y 
Sbjct: 653  EKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYN 712

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            LVYPQ P++ +RTIEL+ +DKL AGQNAT+AVMSYSGYDIEDA+++NK+S+DRGFGRC+V
Sbjct: 713  LVYPQTPMVKSRTIELINFDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLV 772

Query: 780  VKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
             +      ++YAN T DRI+ P     G  +  V  H      I+D DG+AAPGE+++  
Sbjct: 773  YRNAKCTLKRYANQTYDRIMGP--LIDGNTKKSVWKHE-----IIDSDGIAAPGEMVENR 825

Query: 840  DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIK 899
             V +NK SP    G + S   QT + Y+     +KGP      +++V + S+      IK
Sbjct: 826  KVMVNKSSPAANIGPVNSGNVQTQTEYKDVPVVFKGP--VPAYIEKVMISSNAEDAFLIK 883

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
             L+R TRRPE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK
Sbjct: 884  LLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGK 943

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            +IELL GKAGV  G FHYG+AFG        VE +   LVKHGF+Y GKD  YSGITG P
Sbjct: 944  LIELLAGKAGVIKGEFHYGTAFG-----GSKVEDVCSELVKHGFNYLGKDFFYSGITGEP 998

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            LQAYI+ GP+YYQKLKHMV DKMHAR  GPR +LTRQPT GRA+ GGLR+GEMERDCLI 
Sbjct: 999  LQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTGGRAKEGGLRLGEMERDCLIG 1058

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACK 1139
            YGASM++ ERLM+SSD F++ VC  CGL+ Y      +G C +C++   +S++ +PYACK
Sbjct: 1059 YGASMMLIERLMISSDAFDIDVCNKCGLMAY------SGWCHSCRSSSCVSTISMPYACK 1112

Query: 1140 LLIQELQSMNIVPRLKL 1156
            LL QELQSMNIVPRL L
Sbjct: 1113 LLFQELQSMNIVPRLTL 1129


>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
 gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
          Length = 1210

 Score = 1264 bits (3271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1154 (54%), Positives = 809/1154 (70%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+++  I S IDP  
Sbjct: 75   KHLTDPINTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKF 134

Query: 79   FLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +++F D+ +G P  T +      +   + P+ CRL DMTYAAPILV+ EYV+G    +  
Sbjct: 135  YIKFHDIYLGAPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEYVRG----RQR 190

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 191  VKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLS 250

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNRVI++TD KK  + ASVTSS+   KSK+ I M+KG++YL  N     IPI++++KAMG
Sbjct: 251  KNRVIVETDPKKEIVQASVTSSSHERKSKSYIIMKKGRIYLRHNVLNDDIPIVILLKAMG 310

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSP 307
            ++SD+E++ +V G D  Y      + EE   L+IYTQ++ALEYL  ++K     S FG  
Sbjct: 311  IQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLNIYTQQQALEYLGARIKINRKASGFGPA 370

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +    A   +  V +++V V + NFRPK  YV  M RR++ A L+   +DD+DYVGNK
Sbjct: 371  RRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNK 430

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G+ R
Sbjct: 431  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNR 490

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 491  AIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 550

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLC  DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E     ++
Sbjct: 551  MLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQTVGGRECFGQGAY 610

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            +V  NG  +   RRPK F +  R+LRR G+I EFVSVF+N  Q+CV++++D GR+CRPL+
Sbjct: 611  IVFMNGSPIALTRRPKYFLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLI 670

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I +K  SR+   H+  L +G   FDDFL  GL+EY+DVNEEN+A IA+YE +   +TTH+
Sbjct: 671  IVEKKRSRVTARHLSALRNGTMDFDDFLSHGLVEYVDVNEENDANIAVYEREIDANTTHL 730

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ+
Sbjct: 731  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 790

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIEL  YDKL AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+A
Sbjct: 791  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 850

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR++ P R       + +  H      +LD+DGLAA GE + P +VYINK
Sbjct: 851  NLKSYSNGTKDRLVGPTRENG----VSIRKHG-----LLDNDGLAAVGEKVSPGEVYINK 901

Query: 846  ESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            E+P     S I         +Y    QTYK PD     +D+V + + +     IK   R 
Sbjct: 902  ETPDNALSSGITGSDAGLPVKYNPTPQTYKLPD--YSYIDKVMISTTEGESQLIKVQTRQ 959

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G I +Q D PF++ G+ PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 960  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1019

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAG+  G+F YG+ FG        VE +S  LV HGFSY GKD + SGITG PL  Y+
Sbjct: 1020 AGKAGIVSGQFGYGTPFG-----GSPVEEMSAILVNHGFSYGGKDYLTSGITGEPLTYYV 1074

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S 
Sbjct: 1075 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1134

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD  EV VC  CG +GY      +G C  CK+   +  M +PYA KLL+QE
Sbjct: 1135 LLLERLMISSDRHEVDVCESCGFMGY------SGWCQRCKSSAGVVKMVIPYAAKLLVQE 1188

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMN+V RL+L +
Sbjct: 1189 LFSMNVVARLRLQD 1202


>gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Apis mellifera]
          Length = 1134

 Score = 1264 bits (3271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1144 (53%), Positives = 814/1144 (71%), Gaps = 26/1144 (2%)

Query: 14   QLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSG 73
            ++  ++K    VK + DK++L+P FLK +GLVKQH+DSFNYF+N  I+KIV+AN++++S 
Sbjct: 11   RIKSEEKFNKVVKHIQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSD 70

Query: 74   IDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
             DP  ++++ +V +G P +     V+    PH CRL D+ Y+API V+IEY++G      
Sbjct: 71   ADPLFYVKYLNVHVGLPDVEEGFNVTRSTTPHECRLRDLNYSAPITVDIEYIRGHQP--- 127

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             + KN+++IGR+PIMLRS  CVL GK   ELA++ ECP DPGGYFI+ G EKV+LIQEQ+
Sbjct: 128  -IIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKMNECPHDPGGYFIVNGQEKVILIQEQM 186

Query: 193  SKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
             +NR+I++ D KG I AS  S T   K+KT I    G+ Y+  N F   IP+ ++ KAMG
Sbjct: 187  LRNRIILEEDSKGCIVASCNSVTHERKTKTNIVGRAGRYYMRHNIFQDDIPVTIIFKAMG 246

Query: 253  MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            + SDQE++Q++G +  +     PS+EEC  L+++ Q +AL +L  K K+  F    +   
Sbjct: 247  IVSDQEIMQLIGTEEEFMKKFAPSLEECHVLNVFAQNQALRFLSNKRKQKRFSVIKSSIT 306

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
                  L    L++VPV + NF+ K  Y+A+M+R++++A  +   +DD+DY GNKRLEL+
Sbjct: 307  DEMKDALATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELA 366

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L+SL+FEDLFK    E+++  D  + K  ++++FD+ + + +D IT GL   +S+GN+
Sbjct: 367  GSLLSLMFEDLFKRFNWELKQIADKNIPK-IKAAQFDIVKHMRQDQITNGLAFAISSGNW 425

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DT
Sbjct: 426  TIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDT 485

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGE CGLVKNLALMTH+TT+ +E P+I L + LGVE++ +L GEE++N N ++V  NG 
Sbjct: 486  PEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEINNKNVYMVFLNGN 545

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ILG  +  +   +V R LRR G I  FVS++   + RC+ I+SDGGR+CRP +I   G  
Sbjct: 546  ILGIVKNYQRLVNVFRLLRRKGLINGFVSIYTQHQHRCIQISSDGGRLCRPYIIVQNGDP 605

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             ++E H+K L  G+RSF+DFL++GLIEYLDVNEEN++ IA  E      TTH+EIEPFT+
Sbjct: 606  LVQEEHVKLLEQGIRSFEDFLQDGLIEYLDVNEENDSSIAFNESHINEKTTHLEIEPFTL 665

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVYPQ P++ +RT
Sbjct: 666  LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRT 725

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+ +DKL AGQNAT+AVMSYSGYDIEDA+++NK+S+DRGFGRC+V +      ++YAN
Sbjct: 726  IELINFDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKRYAN 785

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DRI+ P        +  V  H      I+D DG+AAPGE+++   V +NK SP    
Sbjct: 786  QTYDRIMGP--LIDANTKKSVWKHE-----IIDSDGIAAPGEMVENRKVMVNKSSPAANI 838

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            G + S   QT + Y+     +KGP      +++V + S+      IK L+R TRRPE+GD
Sbjct: 839  GPVNSGNVQTQTEYKDVPVVFKGP--VPAYIEKVMISSNAEDAFLIKLLLRQTRRPEIGD 896

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  
Sbjct: 897  KFSSRHGQKGVVGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKAGVIK 956

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G FHYG+AFG        VE +   LVKHGF+Y GKD  YSGITG PLQAYI+ GP+YYQ
Sbjct: 957  GEFHYGTAFG-----GSKVEDVCAELVKHGFNYLGKDFFYSGITGEPLQAYIYSGPVYYQ 1011

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GPR +LTRQPT GRA+ GGLR+GEMERDCLI YGASM++ ERLM+
Sbjct: 1012 KLKHMVQDKMHARARGPRAVLTRQPTGGRAKEGGLRLGEMERDCLIGYGASMMLIERLMI 1071

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD F++ VC  CGL+ Y      +G C +C++   +S++ +PYACKLL QELQSMNIVP
Sbjct: 1072 SSDAFDIDVCNKCGLMAY------SGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIVP 1125

Query: 1153 RLKL 1156
            RL L
Sbjct: 1126 RLTL 1129


>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
            G186AR]
          Length = 1227

 Score = 1264 bits (3270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1157 (54%), Positives = 814/1157 (70%), Gaps = 45/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK++GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 91   KSLTDPINTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 150

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN------PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
            ++RF D+ +G P    +    K +      P+ CRL DMTYAAPILV+ EYV+G    + 
Sbjct: 151  YIRFHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRG----RQ 206

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI+ GTEKV+L+QEQL
Sbjct: 207  RVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQL 266

Query: 193  SKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            SKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N   + +PI++++KAM
Sbjct: 267  SKNRVIVETDLKKEIVQASVTSSSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAM 326

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G++SD+E++ +V G D  +      + EE   L IYTQ +ALEY+  ++K     ++FG 
Sbjct: 327  GIQSDKEMLLLVAGIDSTFQEDFAINFEESVKLGIYTQHQALEYIGSRIKINRKPNSFGI 386

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYVGN
Sbjct: 387  TRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGN 446

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  +D +L KP R+ +FD    +    + IT G+ 
Sbjct: 447  KRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMN 506

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 507  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 566

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G ELH   +
Sbjct: 567  GMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGA 626

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +++  NG  +   RRPK F +  R+LRR G++ EF+SVF+N  Q  V++A+D GR+CRPL
Sbjct: 627  YIIFLNGSPIALTRRPKFFLNSFRRLRRTGRVSEFISVFINHHQNAVHVATDDGRICRPL 686

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I + G S++   H++ L +G   FDDFL  GL+EYLD NEEN++ IA+YE D T  TTH
Sbjct: 687  IIVEDGKSKVTNRHLRLLRNGTMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITQSTTH 746

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ
Sbjct: 747  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQ 806

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ TRTIEL+ YDKL AGQ+ATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+
Sbjct: 807  KPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYS 866

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + Y+N T D++  PDR      R            +LD+DGLAA GE +   +VYIN
Sbjct: 867  TNLKSYSNGTKDKLKGPDRENGVPIRKHA---------LLDNDGLAAVGEKVNHGEVYIN 917

Query: 845  KESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K +P     S +  TG    R   Y  + QTYK PD     +D+V + + +  +  IK  
Sbjct: 918  KVTPENALSSGI--TGSDAGRPIAYIPSPQTYKLPD--PSYIDKVMISATEAENQLIKVQ 973

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TR PE+GDKFSSRHGQKGV G I +  D PFS+ GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 974  TRQTRVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKML 1033

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  LV HGFSY GKD + SGITG PL 
Sbjct: 1034 ELIAGKAGILSGQFGYGTAFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLP 1088

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1089 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1148

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1149 TSQLLLERLMISSDRHEVDVCENCGFMGYL------GWCQRCKTSRGVVKMVIPYAAKLL 1202

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1203 VQELFSMNVVARLKLAD 1219


>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
 gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
          Length = 1196

 Score = 1263 bits (3268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1154 (54%), Positives = 808/1154 (70%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+++  I S IDP  
Sbjct: 61   KHLTDPINTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKF 120

Query: 79   FLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +++F D+ +G P  T +      V   + P+ CRL DMTYAAPILV+ EYV+G    +  
Sbjct: 121  YIKFHDIYLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEYVRG----RQR 176

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 177  VKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLS 236

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNRVI++TD KK  + ASVTSS+   KSK+ I M+KG++YL  N     IPI++++KAMG
Sbjct: 237  KNRVIVETDPKKEIVQASVTSSSHERKSKSYIIMKKGRIYLRHNVLNDDIPIVILLKAMG 296

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSP 307
            ++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL  ++K     S FG  
Sbjct: 297  IQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPA 356

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +    A   +  V +++V V + NFRPK  YV  M RR++ A L+   +DD+DYVGNK
Sbjct: 357  RRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNK 416

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G+ R
Sbjct: 417  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNR 476

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 477  AIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 536

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLC  DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E     ++
Sbjct: 537  MLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQTVGGRECFGQGAY 596

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            +V  NG  +   RRPK F +  R+LRR G+I EFVSVF+N  Q+CV++++D GR+CRPL+
Sbjct: 597  IVFMNGSPIALTRRPKYFLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLI 656

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I +K  SR+   H+  L +G   FDDFL  GL+EY+DVNEEN+A IA+YE +   +TTH+
Sbjct: 657  IVEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDANTTHL 716

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ+
Sbjct: 717  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 776

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIEL  YDKL AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+A
Sbjct: 777  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 836

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR++ P R       + +  H      +LD+DGLAA GE + P +VYINK
Sbjct: 837  NLKSYSNGTKDRLVGPTRENG----VSIRKHG-----LLDNDGLAAVGEKVSPGEVYINK 887

Query: 846  ESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            E+P     S I         +Y    QTYK PD     +D+V + + +     IK   R 
Sbjct: 888  ETPDNALSSGITGSDAGLPVKYNPTPQTYKLPD--YSYIDKVMISTTEGESQLIKVQTRQ 945

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G I +Q D PF++ G+ PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 946  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1005

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAG+  G+F YG+ FG        VE +S  LV HGFSY GKD + SGITG PL  Y+
Sbjct: 1006 AGKAGIISGQFGYGTPFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYV 1060

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S 
Sbjct: 1061 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1120

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD  EV VC  CG +GY      +G C  CK+   +  M +PYA KLL+QE
Sbjct: 1121 LLLERLMISSDRHEVDVCESCGFMGY------SGWCQRCKSSVGVVKMVIPYAAKLLVQE 1174

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMN+V RL+L +
Sbjct: 1175 LFSMNVVARLRLQD 1188


>gi|281338612|gb|EFB14196.1| hypothetical protein PANDA_017492 [Ailuropoda melanoleuca]
          Length = 1058

 Score = 1263 bits (3268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1081 (57%), Positives = 785/1081 (72%), Gaps = 29/1081 (2%)

Query: 81   RFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            R+ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N +
Sbjct: 1    RYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRNAL 56

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+I+
Sbjct: 57   PIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIV 116

Query: 200  DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            + D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQE+
Sbjct: 117  EADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEI 176

Query: 260  VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRAFS 317
            VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A  
Sbjct: 177  VQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARE 236

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
            +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL+S
Sbjct: 237  LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLS 295

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437
            LLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +KRF
Sbjct: 296  LLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRF 354

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
            KM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEA
Sbjct: 355  KMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEA 414

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG  
Sbjct: 415  CGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVI 474

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
            R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    +   
Sbjct: 475  RDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNK 534

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV A
Sbjct: 535  HMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCA 594

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
            GLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ 
Sbjct: 595  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIE 654

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D+
Sbjct: 655  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 714

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
            ++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +  
Sbjct: 715  VMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEG 767

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
                   +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSSR
Sbjct: 768  SNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSR 825

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFHY
Sbjct: 826  HGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHY 885

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            G+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHM
Sbjct: 886  GTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHM 940

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            VLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD F
Sbjct: 941  VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF 1000

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            EV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1001 EVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLS 1054

Query: 1158 E 1158
            +
Sbjct: 1055 K 1055


>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
 gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
          Length = 1196

 Score = 1263 bits (3267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1154 (54%), Positives = 808/1154 (70%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+++  I S IDP  
Sbjct: 61   KHLTDPINTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKF 120

Query: 79   FLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +++F D+ +G P  T +      V   + P+ CRL DMTYAAPILV+ EYV+G    +  
Sbjct: 121  YIKFHDIYLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEYVRG----RQR 176

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 177  VKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLS 236

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNRVI++TD KK  + ASVTSS+   KSK+ I M+KG++YL  N     IPI++++KAMG
Sbjct: 237  KNRVIVETDPKKEIVQASVTSSSHERKSKSYIIMKKGRIYLRHNVLNDDIPIVILLKAMG 296

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSP 307
            ++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL  ++K     S FG  
Sbjct: 297  IQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPA 356

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +    A   +  V +++V V + NFRPK  YV  M RR++ A L+   +DD+DYVGNK
Sbjct: 357  RRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNK 416

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G+ R
Sbjct: 417  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNR 476

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 477  AIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 536

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLC  DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E     ++
Sbjct: 537  MLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQTVGGRECFGQGAY 596

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            +V  NG  +   RRPK F +  R+LRR G+I EFVSVF+N  Q+CV++++D GR+CRPL+
Sbjct: 597  IVFMNGSPIALTRRPKYFLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLI 656

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I +K  SR+   H+  L +G   FDDFL  GL+EY+DVNEEN+A IA+YE +   +TTH+
Sbjct: 657  IVEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDANTTHL 716

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ+
Sbjct: 717  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 776

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIEL  YDKL AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+A
Sbjct: 777  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 836

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR++ P R       + +  H      +LD+DGLAA GE + P +VYINK
Sbjct: 837  NLKSYSNGTKDRLVGPTRENG----VSIRKHG-----LLDNDGLAAVGEKVSPGEVYINK 887

Query: 846  ESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            E+P     S I         +Y    QTYK PD     +D+V + + +     IK   R 
Sbjct: 888  ETPDNALSSGITGSDAGLPVKYNPTPQTYKLPD--YSYIDKVMISTTEGESQLIKVQTRQ 945

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G I +Q D PF++ G+ PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 946  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1005

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAG+  G+F YG+ FG        VE +S  LV HGFSY GKD + SGITG PL  Y+
Sbjct: 1006 AGKAGIISGQFGYGTPFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYV 1060

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S 
Sbjct: 1061 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1120

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD  EV VC  CG +GY      +G C  CK+   +  M +PYA KLL+QE
Sbjct: 1121 LLLERLMISSDRHEVDVCESCGFMGY------SGWCQRCKSSVGVVKMVIPYAAKLLVQE 1174

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMN+V RL+L +
Sbjct: 1175 LFSMNVVARLRLQD 1188


>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
 gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
          Length = 1210

 Score = 1263 bits (3267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1154 (54%), Positives = 808/1154 (70%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   +RKIV+++  I S IDP  
Sbjct: 75   KHLTDPINTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLRKIVQSSAEIRSDIDPKF 134

Query: 79   FLRFKDVRIGQPSMTVDGVS-----EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +++F D+ +G P  T +  S       + P+ CRL DMTYAAPILV+ EYV+G    +  
Sbjct: 135  YIKFHDIYLGTPRRTDEEQSGIKADSTITPNECRLRDMTYAAPILVDFEYVRG----RQR 190

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 191  VKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLS 250

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNRVI++TD KK  + ASVTSS+   KSK+ I M+KG++YL  N     IPI++++KAMG
Sbjct: 251  KNRVIVETDPKKEIVQASVTSSSHERKSKSYIIMKKGRIYLRHNVLNDDIPIVILLKAMG 310

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSP 307
            ++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL  ++K     S FG  
Sbjct: 311  IQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPA 370

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +    A   +  V +++V V + NFRPK  YV  M RR++ A L+   +DD+DYVGNK
Sbjct: 371  RRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNK 430

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G+ R
Sbjct: 431  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNR 490

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 491  AIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 550

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLC  DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E     ++
Sbjct: 551  MLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQTVGGRECFGQGAY 610

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            +V  NG  +   RRPK F +  R+LRR G+I EFVSVF+N  Q+CV++++D GR+CRPL+
Sbjct: 611  IVFMNGSPIALTRRPKYFLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLI 670

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I +K  SR+   H+  L +G   FDDFL  GL+EY+DVNEEN+A IA+YE +   +TTH+
Sbjct: 671  IVEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDANTTHL 730

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ+
Sbjct: 731  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 790

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIEL  YDKL AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+A
Sbjct: 791  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 850

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR++ P R       + +  H      +LD+DGLAA GE + P +VYINK
Sbjct: 851  NLKSYSNGTKDRLVGPTRENG----VSIRKHG-----LLDNDGLAAVGEKVSPGEVYINK 901

Query: 846  ESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            E+P     S I         +Y    QTYK PD     +D+V + + +     IK   R 
Sbjct: 902  ETPDNALSSGITGSDAGLPVKYNPTPQTYKLPD--YSYIDKVMISTTEGESQLIKVQTRQ 959

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G I +Q D PF++ G+ PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 960  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1019

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAG+  G+F YG+ FG        VE +S  LV HGFSY GKD + SGITG PL  Y+
Sbjct: 1020 AGKAGIISGQFGYGTPFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYV 1074

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S 
Sbjct: 1075 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1134

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD  EV VC  CG +GY      +G C  CK+   +  M +PYA KLL+QE
Sbjct: 1135 LLLERLMISSDRHEVDVCESCGFMGY------SGWCQRCKSSVGVVKMVIPYAAKLLVQE 1188

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMN+V RL+L +
Sbjct: 1189 LFSMNVVARLRLQD 1202


>gi|194753345|ref|XP_001958974.1| GF12287 [Drosophila ananassae]
 gi|190620272|gb|EDV35796.1| GF12287 [Drosophila ananassae]
          Length = 1137

 Score = 1262 bits (3266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1146 (54%), Positives = 820/1146 (71%), Gaps = 33/1146 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D ++ A P+K + +K++LLP FL+V+GLVKQH+DSFN+F+N  I+KIVRAN+ + SG DP
Sbjct: 20   DSKEWARPIKPLQEKWKLLPAFLQVKGLVKQHIDSFNHFINVDIKKIVRANEMVTSGADP 79

Query: 77   SIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              +L++ DVR+G+P +     +++   PH CRL D TY+API V+IEY +G+      ++
Sbjct: 80   LFYLKYLDVRVGKPDIDEGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQR----IK 135

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +N+++IGR+P+MLR   CVL GK E EL++L ECPLDPGGYF+++G EKV+LIQEQLS N
Sbjct: 136  RNNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN 195

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            +++ + D  G +   VTSST   KS+T++  + GK YL  N     IPI+V+ KA+G+ S
Sbjct: 196  KMLTE-DFNGVVQCQVTSSTHEKKSRTLVISKHGKYYLKHNSMTDDIPIVVIFKALGVVS 254

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR- 314
            DQE++  +G D +       S+ E  NL ++TQ++AL+Y+  K+    F S         
Sbjct: 255  DQEIMAHIGIDSKSQNRFGASLLEAFNLKVFTQQRALDYMGSKLVVKRFQSATTKTPAEE 314

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  +L    LA+VPV N NF+ K  YV++M+RR++ A L+K   DD+DY GNKRLEL+G 
Sbjct: 315  ARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGS 374

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            L+SL+FEDLFK M  E++   D  + K  ++++FD+ + +    IT GLE  +S+GN+ +
Sbjct: 375  LISLMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRAAQITAGLESAISSGNWTI 433

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPE
Sbjct: 434  KRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 493

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TT+ EE P++ L +  GVED+  +SG  ++NPN FLV  NG +L
Sbjct: 494  GEACGLVKNLALMTHITTEVEEKPVMVLAFNAGVEDIREVSGNPINNPNVFLVFINGNVL 553

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G     +     +R +RR G++G +VSV  +  QRC+YI +DGGR+CRP +I +K    +
Sbjct: 554  GLTLNHRHLVKNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKCRPLV 613

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
            K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E      TTH+EIEPFT+LG
Sbjct: 614  KQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEERTTHLEIEPFTLLG 673

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+Y LVYPQ P++ ++TIE
Sbjct: 674  VCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTIE 733

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++YAN T
Sbjct: 734  LTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQT 793

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             DRI+ P +    A   +V+   +    +LD DG+ APGE+++   + INKE P  T   
Sbjct: 794  FDRIMGPVKD---ALTNKVIFKHD----VLDTDGIVAPGEMVQNKQIMINKEMPAVTS-- 844

Query: 855  IMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
             M+P  GQ+    Y +   +YKGP  E   ++RV + ++   D  IK L+R TR PE+GD
Sbjct: 845  -MNPLDGQSPQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKILLRQTRIPEIGD 901

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV+QED P+++ GICPD+IMNPHGFPSRMTVGK +ELLGGKAGV  
Sbjct: 902  KFSSRHGQKGVTGLIVEQEDMPYNDLGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLE 961

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+FHYG+AFG        V+ I   L +HGF+Y GKD  YSGITG PL+AYI+ GP+YYQ
Sbjct: 962  GKFHYGTAFG-----GSKVQDIQAELERHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQ 1016

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+
Sbjct: 1017 KLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMI 1076

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VCR CG L Y         C  C++   +S + +PYACKLL QEL SMN+VP
Sbjct: 1077 SSDAFEVDVCRTCGRLAY------CSWCHFCQSSAYVSKISMPYACKLLFQELTSMNVVP 1130

Query: 1153 RLKLAE 1158
            ++ L +
Sbjct: 1131 KMILED 1136


>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
          Length = 1227

 Score = 1261 bits (3264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1157 (54%), Positives = 814/1157 (70%), Gaps = 45/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK++GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 91   KSLTDPINTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 150

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN------PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
            ++RF D+ +G P    +    K +      P+ CRL DMTYAAPILV+ EYV+G    + 
Sbjct: 151  YIRFHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRG----RQ 206

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI+ GTEKV+L+QEQL
Sbjct: 207  RVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQL 266

Query: 193  SKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            SKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N   + +PI++++KAM
Sbjct: 267  SKNRVIVETDLKKEIVQASVTSSSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAM 326

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G++SD+E++ +V G D  +      + EE   L IYTQ +ALEY+  ++K     ++FG 
Sbjct: 327  GIQSDKEMLLLVAGIDSTFQEDFAINFEESVKLSIYTQHQALEYIGSRIKINRKPNSFGI 386

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYVGN
Sbjct: 387  TRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGN 446

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  +D +L KP R+ +FD    +    + IT G+ 
Sbjct: 447  KRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMN 506

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG +TR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 507  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMLTRISSQFEKTRKVSGPRALQPSQF 566

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G ELH   +
Sbjct: 567  GMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGA 626

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +++  NG  +   RRPK F +  R+LRR G++ EF+SVF+N  Q  V++A+D GR+CRPL
Sbjct: 627  YIIFLNGSPIALTRRPKFFLNSFRRLRRTGRVSEFISVFINHHQNAVHVATDDGRICRPL 686

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I + G S++   H++ L +G   FDDFL  GL+EYLD NEEN++ IA+YE D T  TTH
Sbjct: 687  IIVEDGKSKVTNRHLRLLRNGTMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITQSTTH 746

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ
Sbjct: 747  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVYPQ 806

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ TRTIEL+ YDKL AGQ+ATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+
Sbjct: 807  KPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYS 866

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + Y+N T D++  PDR      R            +LD+DGLAA GE +   +VYIN
Sbjct: 867  TNLKSYSNGTKDKLKGPDRENGVPIRKHA---------LLDNDGLAAVGEKVNYGEVYIN 917

Query: 845  KESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K +P     S +  TG    R   Y  + QTYK PD     +D+V + + +  +  IK  
Sbjct: 918  KVTPENALSSGI--TGSDAGRPIAYIPSPQTYKLPD--PSYIDKVMISATEAENQLIKVQ 973

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TR PE+GDKFSSRHGQKGV G I +  D PFS+ GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 974  TRQTRVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKML 1033

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  LV HGFSY GKD + SGITG PL 
Sbjct: 1034 ELIAGKAGILSGQFGYGTAFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLP 1088

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1089 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1148

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1149 TSQLLLERLMISSDRHEVDVCENCGFMGYL------GWCQRCKTSRGVVKMVIPYAAKLL 1202

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1203 VQELFSMNVVARLKLAD 1219


>gi|198423468|ref|XP_002121670.1| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            B [Ciona intestinalis]
          Length = 1141

 Score = 1261 bits (3263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1163 (53%), Positives = 819/1163 (70%), Gaps = 36/1163 (3%)

Query: 3    LMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRK 62
            + Q++  PK+E  P +  L  PV ++ DK+ LLPEFLKV+GLVKQH+DSFNYFVN  I+ 
Sbjct: 1    MTQIKTEPKEE--PTENDLNKPVSTIEDKWLLLPEFLKVKGLVKQHIDSFNYFVNVDIKN 58

Query: 63   IVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNI 121
            IV+AN R++S  DP+ +L + D+ +G P +     V+  + PH CRL DMTY+A I V+I
Sbjct: 59   IVKANKRVLSDADPNWYLEYLDIHVGVPDVEESFNVTRAVTPHECRLRDMTYSASITVDI 118

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            EY +G    +  + +  + IGR+PIMLRS  CVL GK+  ELA++ ECP DPGGYF+ KG
Sbjct: 119  EYTRG----QQRIIRKALPIGRMPIMLRSSNCVLTGKNGVELAKMNECPYDPGGYFVCKG 174

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
             EKV+LIQEQ+SKNR+I++ D+KG  + SV SST   K++  +  +KG  YL  N   + 
Sbjct: 175  VEKVILIQEQMSKNRMIVERDRKGFCSCSVHSSTHEKKTRVNVLQKKGHFYLQQNALNED 234

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR 301
            +PI V+ KAMG+ES+Q ++Q++G +    ++  PS+E+C  L+++TQ +A +Y+ GK++R
Sbjct: 235  MPICVIFKAMGVESEQSIMQLIGTEENVMSMFSPSLEDCHKLEVFTQLQASKYISGKIRR 294

Query: 302  S--TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
                +G+    +       L    LA++PV + N+  K  Y+A+M+RR++   L    +D
Sbjct: 295  QRPVWGAARQSKTDETRDWLNTTLLAHIPVTDWNYHAKAVYLALMIRRIILTQLGYLEVD 354

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+DY GNKR+EL+G L+SLLFEDLFK   SE++K  D+ + KP R+++FD+ + + +D I
Sbjct: 355  DRDYYGNKRMELAGGLISLLFEDLFKRFNSELKKIADLTIPKP-RAAQFDVVRHMRQDLI 413

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            T  L   +S+GN+ VKRFKM RKG+TQVL RLS+I  LG MTR++ QFEK+RKVSGPR+L
Sbjct: 414  TTSLVIAISSGNWIVKRFKMERKGVTQVLTRLSYISALGMMTRIASQFEKTRKVSGPRSL 473

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
            QPSQWGMLCP DTPEGEACGLVKNLALMTH+T D EE P   L + LGVED+ +LSGEE+
Sbjct: 474  QPSQWGMLCPSDTPEGEACGLVKNLALMTHITVDVEEEPTARLLFNLGVEDVYMLSGEEI 533

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
            H+  S++V  NGL+LG  R P      +R +RR G + +F+SV  N   R VY++SDGGR
Sbjct: 534  HSQLSYIVFLNGLVLGVVRDPVHLVTTLRLMRRHGYLNDFISVSTNRAHRTVYVSSDGGR 593

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            +CRP +I  KG   +  HH++EL  G+RSF+DFLR GL+EYLDV+EEN+  +AL E   T
Sbjct: 594  LCRPYIIVSKGKPLVTSHHIEELKRGLRSFEDFLRSGLVEYLDVSEENDCFVALDESYIT 653

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
              +TH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YL
Sbjct: 654  HKSTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQQRIDTLMYL 713

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            LVYPQ PL+ +RTIEL+ ++KL AGQNA +AVMSYSGYDIEDA+V+N++S+DRG+GRC+V
Sbjct: 714  LVYPQAPLVKSRTIELINFEKLPAGQNAIIAVMSYSGYDIEDALVLNRASVDRGYGRCLV 773

Query: 780  VKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
             +    I ++YAN T D+++ P        R  +  H       LD DG+  PG  ++  
Sbjct: 774  YRNQKCILKRYANQTFDKVMGPALN--AETREPIWRHQG-----LDADGIIMPGVKVESK 826

Query: 840  D-----VYINKESPLETRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKN 893
                  +Y                  Q  S  Y+    +Y+GP G T  +++V + S+  
Sbjct: 827  QKIMCXLYXXXXXXXXXXXXXXXXXLQGPSTSYQETPISYRGPVGST--IEKVMVSSNNE 884

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
                IK L+R TRRPELGDKFSSRHGQKGV G IVQQ D PF++ GICPD+IMNPHG+PS
Sbjct: 885  ESSLIKILLRQTRRPELGDKFSSRHGQKGVTGLIVQQADMPFNQDGICPDVIMNPHGYPS 944

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGK++ELLG KAG   G+FHYG+AFG      D VE +S+ L  +G++Y GKD + S
Sbjct: 945  RMTVGKLMELLGSKAGAIGGKFHYGTAFG-----GDKVEDLSQVLTDNGYNYVGKDCLTS 999

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            GITG   +AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+ +GGLR+GEME
Sbjct: 1000 GITGESFEAYIYQGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSHDGGLRLGEME 1059

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLI YGASML+ ERLM+SSD FEV VC  CGLLGY       G C  CK+  N++++K
Sbjct: 1060 RDCLIGYGASMLLLERLMISSDQFEVDVCGKCGLLGY------DGWCQFCKSSKNVATLK 1113

Query: 1134 LPYACKLLIQELQSMNIVPRLKL 1156
            +PYACKLL QEL SMNI+PRLKL
Sbjct: 1114 IPYACKLLFQELTSMNIIPRLKL 1136


>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
          Length = 1210

 Score = 1261 bits (3263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1154 (54%), Positives = 807/1154 (69%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+++  I S IDP  
Sbjct: 75   KHLTDPINTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKF 134

Query: 79   FLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +++F D+ +G P  T +      +   + P+ CRL DMTYAAPILV+ EYV+G    +  
Sbjct: 135  YIKFHDIYLGTPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEYVRG----RQR 190

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 191  VKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLS 250

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNRVI++TD KK  + ASVTSS+   KSK+ I M+KG++YL  N     IPI++++KAMG
Sbjct: 251  KNRVIVETDPKKEIVQASVTSSSHERKSKSYIIMKKGRIYLRHNVLNDDIPIVILLKAMG 310

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSP 307
            ++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL  ++K     S FG  
Sbjct: 311  IQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPA 370

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +    A   +  V +++V V + NFRPK  YV  M RR++ A L+   +DD+DYVGNK
Sbjct: 371  RRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNK 430

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G+ R
Sbjct: 431  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNR 490

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 491  AIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 550

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLC  DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E     ++
Sbjct: 551  MLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFILGAEDIQTVGGRECFGQGAY 610

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            +V  NG  +   RRPK F +  R+LRR G+I EFVSVF+N  Q+CV+I++D GR+CRPL+
Sbjct: 611  IVFMNGSPIALTRRPKYFLNAFRRLRRMGRISEFVSVFINHNQKCVHISTDDGRICRPLI 670

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I +K  SR+   H+  L +G   FDDFL  GL+EY+DVNEEN+A IA+YE +   +TTH+
Sbjct: 671  IVEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDANTTHL 730

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ+
Sbjct: 731  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 790

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIEL  YDKL AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+A
Sbjct: 791  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 850

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR++ P R       + +  H      +LD+DGLAA GE + P +VYINK
Sbjct: 851  NLKSYSNGTKDRLVGPTRENG----VSIRKHG-----LLDNDGLAAVGEKVSPGEVYINK 901

Query: 846  ESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            E+P     S I         +Y    QTYK PD     +D+V + + +     IK   R 
Sbjct: 902  ETPDNALSSGITGSDAGLPVKYNPTPQTYKLPD--YSYIDKVMISTTEGESQLIKVQTRQ 959

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G I +Q D PF++ G+ PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 960  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1019

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAG+  G+F YG+ FG        VE +S  LV HGFSY GKD + SGITG PL  Y+
Sbjct: 1020 AGKAGIISGQFGYGTPFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYV 1074

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S 
Sbjct: 1075 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1134

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD  EV VC  CG +GY      +  C  CK+   +  M +PYA KLL+QE
Sbjct: 1135 LLLERLMISSDRHEVDVCESCGFMGY------SSWCQRCKSSVGVVKMVIPYAAKLLVQE 1188

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMN+V RL+L +
Sbjct: 1189 LFSMNVVARLRLQD 1202


>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
 gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
          Length = 1137

 Score = 1261 bits (3262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1146 (54%), Positives = 818/1146 (71%), Gaps = 33/1146 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D ++ A P+K + +K++LLP FL+V+GLV+QH+DSFN+F+N  I+KIVRAN+ + SG DP
Sbjct: 20   DSKEWATPIKPLEEKWKLLPAFLQVKGLVRQHIDSFNHFINVDIKKIVRANELVTSGADP 79

Query: 77   SIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
              +L++ DVR+G+P +  DG  +++   PH CRL D TY++PI V+IEY +G+      +
Sbjct: 80   LFYLKYLDVRVGKPDID-DGYNITKATTPHECRLRDTTYSSPITVDIEYTRGTQR----I 134

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            ++N+++IGR+P+MLR   CVL GK E EL++L ECPLDPGGYF+++G EKV+LIQEQLS 
Sbjct: 135  KRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSW 194

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            N+++ + D  G +   VTSST   KS+T++  + G+ YL  N     IPI+V+ KA+G+ 
Sbjct: 195  NKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGRYYLKHNSMTDDIPIVVIFKALGIV 253

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SDQE++  +G D +       S+ E  NL ++TQ++AL+Y+  K+    F S        
Sbjct: 254  SDQEIMAHIGIDTKSQNRFGASLLEAFNLKVFTQQRALDYMGSKLVVKRFQSATTKTPAE 313

Query: 315  -AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L    LA+VPV N NF+ K  YV++M+RR++ A L+K   DD+DY GNKRLEL+G
Sbjct: 314  EARDLLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKTLFDDRDYYGNKRLELAG 373

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
             L+SL+FEDLFK M  E++   D  + K  ++++FD+ + +    IT GLE  +S+GN+ 
Sbjct: 374  SLISLMFEDLFKRMNWELKMIADKNIPK-VKAAQFDVVKHMRAAQITAGLESAISSGNWT 432

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTP
Sbjct: 433  IKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTP 492

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TT+ EE P++ L +  GVED+  +SG  ++NPN FLV  NG +
Sbjct: 493  EGEACGLVKNLALMTHITTEVEERPVMILAFNAGVEDIREVSGNPINNPNVFLVFINGNV 552

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            LG     K     +R +RR G++G FVSV  +  QRC+YI +DGGR+CRP +I +K   R
Sbjct: 553  LGLTLNHKHLVRNLRYMRRKGRMGSFVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKRRPR 612

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +K+ H+ EL  GVR FDDFL +GLIEYLDVNEEN++ IA  E      TTH+EIEPFT+L
Sbjct: 613  VKQFHLDELERGVRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEEGTTHLEIEPFTLL 672

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+Y LVYPQ P++ T+TI
Sbjct: 673  GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTI 732

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL  +DKL AGQNATVAVMS+SGYDIEDA+++NK+S+DRG+GRC+V K      ++YAN 
Sbjct: 733  ELTNFDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQ 792

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
            T DRI+ P +    A   +V+   +    +LD DG+ APGE I    + INKE P  T  
Sbjct: 793  TFDRIMGPVK---DALTNKVIFKHD----VLDTDGIVAPGEQILNKQIMINKEMPAVT-- 843

Query: 854  SIMSPTGQ-TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            S+    GQ T   Y +   +YKGP  E   V+RV + ++   D  IK L+R TR PE+GD
Sbjct: 844  SLNPLEGQSTQVPYTAVPISYKGP--EPSYVERVMVSANSEEDFLIKILLRQTRIPEIGD 901

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV QED P+++ GICPD+IMNPHGFPSRMTVGK +ELLGGKAGV  
Sbjct: 902  KFSSRHGQKGVTGLIVDQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLE 961

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+FHYG+AFG        V  I   L +HGF+Y GKD  YSGITG PLQAYI+ GP+YYQ
Sbjct: 962  GKFHYGTAFG-----GSKVGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQ 1016

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+
Sbjct: 1017 KLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMI 1076

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VCR CG L Y         C  C++  ++S + +PYACKLL QEL SMN+VP
Sbjct: 1077 SSDAFEVDVCRTCGRLAY------CSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVP 1130

Query: 1153 RLKLAE 1158
            ++ L +
Sbjct: 1131 KMILED 1136


>gi|340720183|ref|XP_003398521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            terrestris]
          Length = 1128

 Score = 1261 bits (3262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1144 (53%), Positives = 817/1144 (71%), Gaps = 26/1144 (2%)

Query: 14   QLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSG 73
            ++  + K    VK + DK++L+P FLK +GLVKQH+DSFNYF+N  I+KI++AN++++S 
Sbjct: 5    KIKSETKYNKVVKHIQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEIKKIIKANEKVLSD 64

Query: 74   IDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
             DP  ++++ +V +G P +     V+    PH CRL D+ Y+API V+IEY++G      
Sbjct: 65   ADPLFYVKYLNVHVGLPDVEEGFNVTRSTTPHECRLRDLNYSAPITVDIEYIRGHQP--- 121

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             + KN+++IGR+PIMLRS  CVL GK   EL+++ ECP DPGGYFI+ G EKV+LIQEQ+
Sbjct: 122  -IIKNNLLIGRMPIMLRSSNCVLTGKSHFELSKMNECPHDPGGYFIVNGQEKVILIQEQM 180

Query: 193  SKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
             +NR+I++ D KG I AS  SST   K+KT I  + G+ Y+  N F   IP+ ++ KAMG
Sbjct: 181  LRNRIILEEDSKGCIVASCNSSTHERKTKTNIVGKGGRYYMRHNIFQDDIPVTIIFKAMG 240

Query: 253  MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            + SDQE++Q++G +  +     P++EEC  L+++ Q +AL +L  K K+  +    +   
Sbjct: 241  IVSDQEIMQLIGTEEEFMKKFAPTLEECHVLNVFAQNQALRFLSNKRKQKRYSVIKSSVT 300

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
                 IL    L++VPV + NF+ K  Y+A+M+R++++A  +   +DD+DY GNKRLEL+
Sbjct: 301  DEMKDILATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELA 360

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L+SL+FEDLFK    E+++  D  + K  ++++FD+ + + +D IT GL   +S+GN+
Sbjct: 361  GSLLSLMFEDLFKRFNWELKQIADKNIPK-IKAAQFDIVKHMRQDQITNGLAFAISSGNW 419

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DT
Sbjct: 420  TIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDT 479

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGE CGLVKNLALMTH+TT+ +E P++ L + LGVE++ +L GEE++N   ++V  NG 
Sbjct: 480  PEGEGCGLVKNLALMTHITTEIDEEPIVRLAFNLGVENVNILGGEEINNKKVYMVFLNGN 539

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ILG  +  +   +V R LRR G I  FVS+    + RC+ I+SDGGR+CRP +I   G  
Sbjct: 540  ILGIVKNYQRLVNVFRLLRRKGLINGFVSIHTQHQHRCIQISSDGGRLCRPYIIVQNGNP 599

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             I+E+H+K L  G+RSF+DFL+EGLIEYLDVNEEN++ IA  E      TTH+EIEPFT+
Sbjct: 600  LIQENHIKLLEQGIRSFEDFLQEGLIEYLDVNEENDSSIAFNESHINEKTTHLEIEPFTL 659

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVYPQ P++ +RT
Sbjct: 660  LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRT 719

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+ +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRGFGRC++ +      ++YAN
Sbjct: 720  IELINFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKRYAN 779

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DRI+ P        +  V  H      I+D DG+AAPGE+++   V +NK SP    
Sbjct: 780  QTYDRIMGP--LIDSNTKKPVWKHD-----IIDSDGIAAPGEMVENRKVMVNKSSPAANI 832

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            G + +   QT + Y+     +KGP      V++V + S+      IK L+R TRRPE+GD
Sbjct: 833  GPVNAGNVQTQTEYKDVPVVFKGP--VPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGD 890

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  
Sbjct: 891  KFSSRHGQKGVTGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKAGVIK 950

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G FHYG+AFG        V+ +   LVKHG++Y GKD+ YSGITG PLQAYI+ GP+YYQ
Sbjct: 951  GEFHYGTAFG-----GSKVKDVCNELVKHGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQ 1005

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GPR +LTRQPTEGRA+ GGLR+GEMERDCLI YGASM++ ERLM+
Sbjct: 1006 KLKHMVQDKMHARSRGPRAVLTRQPTEGRAKEGGLRLGEMERDCLIGYGASMMLIERLMI 1065

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD F+V VC  CGL+ Y      +G C +C++   +S++ +PYACKLL QELQSMNIVP
Sbjct: 1066 SSDAFDVDVCNKCGLMAY------SGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIVP 1119

Query: 1153 RLKL 1156
            RL L
Sbjct: 1120 RLTL 1123


>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
 gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
          Length = 1137

 Score = 1261 bits (3262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1146 (54%), Positives = 818/1146 (71%), Gaps = 33/1146 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D ++ A P+K + +K++LLP FL+V+GLV+QH+DSFN+F+N  I+KIVRAN+ + SG DP
Sbjct: 20   DSKEWATPIKPLEEKWKLLPAFLQVKGLVRQHIDSFNHFINVDIKKIVRANELVTSGADP 79

Query: 77   SIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
              +L++ DVR+G+P +  DG  +++   PH CRL D TY++PI V+IEY +G+      +
Sbjct: 80   LFYLKYLDVRVGKPDID-DGYNITKATTPHECRLRDTTYSSPITVDIEYTRGTQR----I 134

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            ++N+++IGR+P+MLR   CVL GK E EL++L ECPLDPGGYF+++G EKV+LIQEQLS 
Sbjct: 135  KRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSW 194

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            N+++ + D  G +   VTSST   KS+T++  + G+ YL  N     IPI+V+ KA+G+ 
Sbjct: 195  NKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGRYYLKHNSMTDDIPIVVIFKALGIV 253

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SDQE++  +G D +       S+ E  NL ++TQ++AL+Y+  K+    F S        
Sbjct: 254  SDQEIMAHIGIDTKSQNRFGASLLEAFNLKVFTQQRALDYMGSKLVVKRFQSATTKTPAE 313

Query: 315  -AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L    LA+VPV N NF+ K  YV++M+RR++ A L+K   DD+DY GNKRLEL+G
Sbjct: 314  EARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKTLFDDRDYYGNKRLELAG 373

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
             L+SL+FEDLFK M  E++   D  + K  ++++FD+ + +    IT GLE  +S+GN+ 
Sbjct: 374  SLISLMFEDLFKRMNWELKMIADKNIPK-VKAAQFDVVKHMRAAQITAGLESAISSGNWT 432

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTP
Sbjct: 433  IKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTP 492

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TT+ EE P++ L +  GVED+  +SG  ++NPN FLV  NG +
Sbjct: 493  EGEACGLVKNLALMTHITTEVEERPVMILAFNAGVEDIREVSGNPINNPNVFLVFINGNV 552

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            LG     K     +R +RR G++G FVSV  +  QRC+YI +DGGR+CRP +I +K   R
Sbjct: 553  LGLTLNHKHLVRNLRYMRRKGRMGSFVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKRRPR 612

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +K+ H+ EL  GVR FDDFL +GLIEYLDVNEEN++ IA  E      TTH+EIEPFT+L
Sbjct: 613  VKQFHLDELERGVRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEEGTTHLEIEPFTLL 672

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+Y LVYPQ P++ T+TI
Sbjct: 673  GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTI 732

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL  +DKL AGQNATVAVMS+SGYDIEDA+++NK+S+DRG+GRC+V K      ++YAN 
Sbjct: 733  ELTNFDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQ 792

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
            T DRI+ P +    A   +V+   +    +LD DG+ APGE I    + INKE P  T  
Sbjct: 793  TFDRIMGPVKD---ALTNKVIFKHD----VLDTDGIVAPGEQILNKQIMINKEMPAVT-- 843

Query: 854  SIMSPTGQ-TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            S+    GQ T   Y +   +YKGP  E   V+RV + ++   D  IK L+R TR PE+GD
Sbjct: 844  SLNPLEGQSTQVPYTAVPISYKGP--EPSYVERVMVSANSEEDFLIKILLRQTRIPEIGD 901

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV QED P+++ GICPD+IMNPHGFPSRMTVGK +ELLGGKAGV  
Sbjct: 902  KFSSRHGQKGVTGLIVDQEDMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLE 961

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+FHYG+AFG        V  I   L +HGF+Y GKD  YSGITG PLQAYI+ GP+YYQ
Sbjct: 962  GKFHYGTAFG-----GSKVGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQ 1016

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+
Sbjct: 1017 KLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMI 1076

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VCR CG L Y         C  C++  ++S + +PYACKLL QEL SMN+VP
Sbjct: 1077 SSDAFEVDVCRTCGRLAY------CSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVP 1130

Query: 1153 RLKLAE 1158
            ++ L +
Sbjct: 1131 KMILED 1136


>gi|350420099|ref|XP_003492398.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            impatiens]
          Length = 1130

 Score = 1260 bits (3261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1133 (53%), Positives = 811/1133 (71%), Gaps = 26/1133 (2%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKD 84
            VK + DK++L+P FLK +GLVKQH+DSFNYF+N  I+KI++AN++++S  DP  ++++ +
Sbjct: 18   VKHIQDKWKLVPAFLKGKGLVKQHIDSFNYFINVEIKKIIKANEKVLSDADPLFYVKYLN 77

Query: 85   VRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
            V +G P +     V+    PH CRL D+ Y+API V+IEY++G       + KN+++IGR
Sbjct: 78   VHVGLPDVEEGFNVTRSTTPHECRLRDLNYSAPITVDIEYIRGHQP----IIKNNLLIGR 133

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +PIMLRS  CVL GK   EL+++ ECP DPGGYFI+ G EKV+LIQEQ+ +NR+I++ D 
Sbjct: 134  MPIMLRSSNCVLTGKSHFELSKMNECPHDPGGYFIVNGQEKVILIQEQMLRNRIILEEDS 193

Query: 204  KGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
            KG I AS  SST   K+KT I  + G+ Y+  N F   IP+ ++ KAMG+ SDQE++Q++
Sbjct: 194  KGCIVASCNSSTHERKTKTNIVGKAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLI 253

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
            G +  +     P++EEC  L+++ Q +AL +L  K K+  +             IL    
Sbjct: 254  GTEEEFMKKFAPTLEECHVLNVFAQNQALRFLSNKRKQKRYSVIKASVTDEMKDILATNI 313

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L++VPV + NF+ K  Y+A+M+R++++A  +   +DD+DY GNKRLEL+G L+SL+FEDL
Sbjct: 314  LSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLIDDRDYYGNKRLELAGSLLSLMFEDL 373

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKG 443
            FK    E+++  D  + K  ++++FD+ + + +D IT GL   +S+GN+ +KRFKM R G
Sbjct: 374  FKRFNWELKQIADKNIPK-IKAAQFDIVKHMRQDQITNGLAFAISSGNWTIKRFKMERHG 432

Query: 444  MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKN 503
            +TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE CGLVKN
Sbjct: 433  VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKN 492

Query: 504  LALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCF 563
            LALMTH+TT+ +E P++ L + LGVE++ +L GEE++N   ++V  NG ILG  +  +  
Sbjct: 493  LALMTHITTEIDEEPIVRLAFNLGVENVNILGGEEINNKKVYMVFLNGNILGIVKNYQRL 552

Query: 564  ADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL 623
             +V R LRR G I  FVS+    + RC+ I+SDGGR+CRP +I   G   I+E H+K L 
Sbjct: 553  VNVFRLLRRKGLINGFVSIHTQHQHRCIQISSDGGRLCRPYIIVQNGNPLIQEKHIKLLE 612

Query: 624  DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYP 683
             G+RSF+DFL+EGLIEYLDVNEEN++ IA  E      TTH+EIEPFT+LGV AGL+PYP
Sbjct: 613  QGIRSFEDFLQEGLIEYLDVNEENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYP 672

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
            HHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVYPQ P++ +RTIEL+ +DKL A
Sbjct: 673  HHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPA 732

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQNATVAVMSYSGYDIEDA+++NK+S+DRGFGRC++ +      ++YAN T DRI+ P  
Sbjct: 733  GQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKRYANQTYDRIMGP-- 790

Query: 804  TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 863
                  +  V  H      I+D DG+AAPGE+++   V +NK SP    G + +   QT 
Sbjct: 791  LIDSNTKKPVWKHD-----IIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNAGNVQTQ 845

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
            + Y+     +KGP      V++V + S+      IK L+R TRRPE+GDKFSSRHGQKGV
Sbjct: 846  TEYKDVPVVFKGP--VPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGV 903

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G FHYG+AFG 
Sbjct: 904  TGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKAGVIKGEFHYGTAFG- 962

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
                   V+ +   LVKHG++Y GKD+ YSGITG PLQAYI+ GP+YYQKLKHMV DKMH
Sbjct: 963  ----GSKVKDVCNELVKHGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMH 1018

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GPR +LTRQPTEGRA+ GGLR+GEMERDCLI YGASM++ ERLM+SSD F+V VC 
Sbjct: 1019 ARARGPRAVLTRQPTEGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDVDVCN 1078

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             CGL+ Y      +G C +C++   +S++ +PYACKLL QELQSMNIVPRL L
Sbjct: 1079 KCGLMAY------SGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIVPRLTL 1125


>gi|56541770|emb|CAI30267.1| hypothetical protein [Pongo abelii]
          Length = 1116

 Score = 1259 bits (3259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1144 (55%), Positives = 808/1144 (70%), Gaps = 48/1144 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS   VL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNRVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLF DLFK   SE++K  D ++ K  R+++FD+     +    +     +STGN+ +K
Sbjct: 369  LSLLFGDLFKKFNSEMKKIADQVIPK-QRAAQFDVVNTCAKTRSPMAWVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+ + QVL RL +I  LG MTR+S QFEK+RKVS                  PEG
Sbjct: 428  RFKMDRQ-VNQVLYRLLYISALGMMTRISSQFEKTRKVS-----------------VPEG 469

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 470  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 529

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 530  VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 589

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV
Sbjct: 590  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 649

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 650  CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 709

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 710  IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 769

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +
Sbjct: 770  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 822

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 823  EGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 880

Query: 916  SRHGQ-KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SRHGQ KGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GR
Sbjct: 881  SRHGQKKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGR 940

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
            FHYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKL
Sbjct: 941  FHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKL 995

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SS
Sbjct: 996  KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISS 1055

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRL
Sbjct: 1056 DAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1109

Query: 1155 KLAE 1158
            KL++
Sbjct: 1110 KLSK 1113


>gi|393911066|gb|EJD76149.1| DNA-directed RNA polymerase [Loa loa]
          Length = 1136

 Score = 1259 bits (3258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1156 (53%), Positives = 818/1156 (70%), Gaps = 41/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +++   V++V DK+ L+P FL+VRGLVKQH+ S++YFV+T I+KI+RANDRI S  +PS 
Sbjct: 3    ERITGEVQAVKDKWALVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDRITSDANPSF 62

Query: 79   FLRFKDVRIGQPSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
            +L++ D+R+G PS     + +++K++PH CRL DMTY+API V+IEY +GS      + +
Sbjct: 63   YLKYLDIRVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQR----VLR 118

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
            N +VIG++P+MLRS +CVL   +E+ELA + ECP DPGGYFII+G+EKV+LIQEQLSKNR
Sbjct: 119  NGLVIGKMPVMLRSSKCVLKNMNESELAHVQECPYDPGGYFIIRGSEKVVLIQEQLSKNR 178

Query: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            ++I  + K  +   + SST+  KSKT I  +K + Y+  NQ    +P+ +V KAMG ESD
Sbjct: 179  IMIGRNSKKELQCEILSSTQERKSKTYIASKKQRYYVRHNQLSDDVPVAIVFKAMGFESD 238

Query: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFG------SPPND 310
             ++V  VG + ++ A + PSIEECA+  I TQE AL+Y+  KVK   FG      S    
Sbjct: 239  HDIVSAVGLEEKFVAAMAPSIEECASHQIVTQEGALQYIASKVKMRKFGPFASGTSSTLP 298

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
            RE  A   L ++ +A+VP  + N + K  Y+ +M+RR+++A +     DD+D+ GNKRLE
Sbjct: 299  REHEAIDFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDRDFYGNKRLE 358

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTG 430
            L+G L++LLFED+FK   SE+++  D  L K + ++  D+ + + +D IT  L   L+TG
Sbjct: 359  LAGSLLALLFEDVFKRFNSELKRIADNSLGK-TLAAPLDIVKHMRQDLITNALVDALATG 417

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+ +KRFKM R+G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGMLCP 
Sbjct: 418  NWTIKRFKMERQGVTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPS 477

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            DTPEGE+CGLVKNLAL++H+TTD +E P+I L Y  GVED++ L    +H+P   +V  N
Sbjct: 478  DTPEGESCGLVKNLALISHITTDSDEEPVIRLLYNSGVEDVKSLHFSAIHSPVYHIVFLN 537

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G+I+G    P+     +R +RR G + EFVSV  N  QR VYIASDGGR+CRP +I   G
Sbjct: 538  GVIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKNG 597

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPF 670
            + ++ + H++EL  G R F+DF+ +GLIEYLDVNE N+A IA+YE    P+TTH+EIEPF
Sbjct: 598  VPQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKPNTTHLEIEPF 657

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            T+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+YLLVYPQRPL+ T
Sbjct: 658  TLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKT 717

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TIE   ++KL AGQNA +AVMSYSGYDIEDA+V+NK+SLDRG+GRC+V K   A  +KY
Sbjct: 718  KTIEFCNFEKLPAGQNAVIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKY 777

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
             N T DR++ P  T     R  +  H      +LD +G+   G  I    V INK  P+ 
Sbjct: 778  PNQTFDRLMGP--TVEATTRKPIYKHQ-----VLDQEGIVYVGACIHSKQVMINKHMPVV 830

Query: 851  TRGSIMSPTGQTDS--------RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            +  +  + +   D          Y+     Y+ P       +RV L  +++    IK L+
Sbjct: 831  STEAGATTSSNNDGTNVSSHEVEYKDVSVVYRNP--VPSYAERVLLTYNEDDAHLIKVLL 888

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPELGDKFSSRHGQKGVCG I QQED PF++ G+CPD+IMNPHG+PSRMTVGK++E
Sbjct: 889  RQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLME 948

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            LL GK  V  G+FHYG+AFG      D V+ + E L   GF+Y GKDM+ SGITG  L A
Sbjct: 949  LLSGKNAVLSGKFHYGTAFG-----GDQVDVVCEELAARGFNYLGKDMLTSGITGQQLCA 1003

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            YI+ GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGA
Sbjct: 1004 YIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGA 1063

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            SML+ ERLMVSSD F+V VC  CGL+GY       G C  C++   ++++K+PYACKLL 
Sbjct: 1064 SMLLMERLMVSSDEFKVDVCSQCGLIGY------KGWCQMCRSSRTMATIKIPYACKLLF 1117

Query: 1143 QELQSMNIVPRLKLAE 1158
            QELQSMNIVP++ L++
Sbjct: 1118 QELQSMNIVPKISLSK 1133


>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
            CBS 127.97]
          Length = 1210

 Score = 1258 bits (3255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1154 (53%), Positives = 807/1154 (69%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+++  I S IDP  
Sbjct: 75   KHLTDPINTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKF 134

Query: 79   FLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +++F D+ +G P  T +      +   + P+ CRL DMTYAAPILV+ EYV+G    +  
Sbjct: 135  YIKFHDIYLGTPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEYVRG----RQR 190

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 191  VKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLS 250

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNRVI++TD KK  + ASVTSS+   KSK+ I M+KG++YL  N     IPI++++KAMG
Sbjct: 251  KNRVIVETDPKKEIVQASVTSSSHERKSKSYIIMKKGRIYLRHNVLNDDIPIVILLKAMG 310

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSP 307
            ++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL  ++K     S FG  
Sbjct: 311  IQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPA 370

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +    A   +  V +++V V + NFRPK  YV  M RR++ A L+   +DD+DYVGNK
Sbjct: 371  RRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNK 430

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G+ R
Sbjct: 431  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNR 490

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 491  AIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 550

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLC  DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E     ++
Sbjct: 551  MLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFILGAEDIQTVGGRECFGQGAY 610

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            +V  NG  +   RRPK F +  R+LRR G+I EFVSVF+N  Q+CV+I++D GR+CRPL+
Sbjct: 611  IVFMNGSPIALTRRPKYFLNAFRRLRRMGRISEFVSVFINHNQKCVHISTDDGRICRPLI 670

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I +K  SR+   H+  L +G   FDDFL  GL+EY+DVNEEN+A IA+YE +   +TTH+
Sbjct: 671  IVEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDANTTHL 730

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ+
Sbjct: 731  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 790

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIEL  YDKL AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+A
Sbjct: 791  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 850

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + ++N T DR++ P R       + +  H      +LD+DGLAA GE + P +VYINK
Sbjct: 851  NLKSHSNGTKDRLVGPTRENG----VSIRKHG-----LLDNDGLAAVGEKVSPGEVYINK 901

Query: 846  ESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            E+P     S I         +Y    QTYK PD     +D+V + + +     IK   R 
Sbjct: 902  ETPDNALSSGITGSDAGLPVKYNPTPQTYKLPD--YSYIDKVMISTTEGESQLIKVQTRQ 959

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G I +Q D PF++ G+ PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 960  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1019

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAG+  G+F YG+ FG        VE +S  LV HGFSY GKD + SGITG PL  Y+
Sbjct: 1020 AGKAGIISGQFGYGTPFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYV 1074

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S 
Sbjct: 1075 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1134

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD  EV VC  CG +GY      +  C  CK+   +  M +PYA KLL+QE
Sbjct: 1135 LLLERLMISSDRHEVDVCESCGFMGY------SSWCQRCKSSVGVVKMVIPYAAKLLVQE 1188

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMN+V RL+L +
Sbjct: 1189 LFSMNVVARLRLQD 1202


>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1227

 Score = 1257 bits (3253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1157 (53%), Positives = 813/1157 (70%), Gaps = 45/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK++GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 91   KSLTDPINTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 150

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN------PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
            ++RF D+ +G P    +    K +      P+ CRL DMTYAAPILV+ EYV+G    + 
Sbjct: 151  YIRFHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRG----RQ 206

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI+ GTEKV+L+QEQL
Sbjct: 207  RVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQL 266

Query: 193  SKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            SKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N   + +PI++++KAM
Sbjct: 267  SKNRVIVETDLKKEIVQASVTSSSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAM 326

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G++SD+E++ +V G D  +      + EE   L I TQ +ALEY+  ++K     ++FG 
Sbjct: 327  GIQSDKEMLLLVAGIDSTFQEDFAINFEESVKLGICTQHQALEYIGSRIKINRKPNSFGI 386

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYVGN
Sbjct: 387  TRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGN 446

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  +D +L KP R+ +FD    +    + IT G+ 
Sbjct: 447  KRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMN 506

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG +TR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 507  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMLTRISSQFEKTRKVSGPRALQPSQF 566

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G ELH   +
Sbjct: 567  GMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGA 626

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +++  NG  +   RRPK F +  R+LRR G++ EF+SVF+N  Q  V++A+D GR+CRPL
Sbjct: 627  YIIFLNGSPIALTRRPKFFLNSFRRLRRTGRVSEFISVFINHHQNAVHVATDDGRICRPL 686

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I + G S++   H++ L +G   FDDFL  GL+EYLD NEEN++ IA+YE D T  TTH
Sbjct: 687  IIVEDGKSKVTNRHLRLLRNGTMEFDDFLAHGLVEYLDCNEENDSYIAVYEEDITQSTTH 746

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ
Sbjct: 747  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVYPQ 806

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ TRTIEL+ YDKL AGQ+ATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+
Sbjct: 807  KPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYS 866

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + Y+N T D++  PDR      R            +LD+DGLAA GE +   +VYIN
Sbjct: 867  TNLKSYSNGTKDKLKGPDRENGVPIRKHA---------LLDNDGLAAVGEKVNYGEVYIN 917

Query: 845  KESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K +P     S +  TG    R   Y  + QTYK PD     +D+V + + +  +  IK  
Sbjct: 918  KVTPENALSSGI--TGSDAGRPIAYIPSPQTYKLPD--PSYIDKVMISATEAENQLIKVQ 973

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TR PE+GDKFSSRHGQKGV G I +  D PFS+ GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 974  TRQTRVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKML 1033

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  LV HGFSY GKD + SGITG PL 
Sbjct: 1034 ELIAGKAGILSGQFGYGTAFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLP 1088

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1089 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1148

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1149 TSQLLLERLMISSDRHEVDVCENCGFMGYL------GWCQRCKTSRGVVKMVIPYAAKLL 1202

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1203 VQELFSMNVVARLKLAD 1219


>gi|328771672|gb|EGF81711.1| hypothetical protein BATDEDRAFT_29606 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1167

 Score = 1256 bits (3251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1187 (53%), Positives = 842/1187 (70%), Gaps = 68/1187 (5%)

Query: 11   KDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI 70
            +D+   + +KL  P+ +  DK++LLP FL+ +GLVKQHLDSFNYF+ T I+ IV+AN ++
Sbjct: 4    RDDMRYEGKKLTDPINTAEDKWRLLPAFLQTKGLVKQHLDSFNYFLETDIKLIVQANAKV 63

Query: 71   VSGIDPSIFLRFKDVRIGQPSM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH 128
             S IDP  FLRF D+RI  P       GV  +L P  CRL D+TYA  I V+IEYV+G  
Sbjct: 64   DSDIDPHFFLRFLDIRIKPPQAEDIQKGVVYELTPQECRLRDITYAGTICVDIEYVRG-- 121

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
              K  + K ++ IGR+PIML+S  CVL  K   E+A LGECPLDPGGYFII+GTEKV+LI
Sbjct: 122  --KQVIVKRNIEIGRMPIMLKSSYCVLTNKSPDEIADLGECPLDPGGYFIIRGTEKVILI 179

Query: 189  QEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVV 247
            QEQLS+NR+I++TD+ G I ++VTSST   KSKT++   K GKM L  N    ++P+ V+
Sbjct: 180  QEQLSRNRIIVETDRFGCICSNVTSSTLEKKSKTIVACGKTGKMVLKHNSLTAEVPVTVI 239

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            MKAMG+ESD+E+ +++ G D +Y AL  PS+EE A+L I TQ +ALEY+  KVK  TF +
Sbjct: 240  MKAMGVESDREIAELICGDDLKYLALFSPSLEEGASLKISTQRQALEYIGAKVK-VTFKT 298

Query: 307  PP----NDREGRAFSILRDVFLANVPVHNN-----NFRPKCFYVAVMLRRMVEAMLNKDA 357
                   D    A  +L    LA+VPV  +     NFRPK  Y+A+M+RR+++A+     
Sbjct: 299  NRVGIRRDWVEEARDLLATTVLAHVPVEADDAGVLNFRPKAIYIALMIRRVLQAVKEGGI 358

Query: 358  MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD 417
            +DD+D++GNKRLEL+GQL+SLLFEDLFK+ IS +++ VDI L + +R+S++D +  + + 
Sbjct: 359  VDDRDFIGNKRLELAGQLMSLLFEDLFKSWISAIKRAVDIQLKRTNRTSQYDAAAAVSQT 418

Query: 418  S--ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
            S  IT G+ R +S+GN+ VKRFKM R G+TQVL+RLS++  LG +TR+S QFEK+RKV+G
Sbjct: 419  SRFITDGMFRAISSGNWSVKRFKMERAGVTQVLSRLSYVSALGMLTRISSQFEKTRKVAG 478

Query: 476  PRALQPSQWGMLC-PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
            PR+LQ SQWGM+C   DT +GEACGL+KNLALMT++TTD  +  L  L + LG ED+ L+
Sbjct: 479  PRSLQTSQWGMICLSGDTEQGEACGLIKNLALMTYITTDSNDVSLRKLAFVLGTEDINLV 538

Query: 535  SGEELH-NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
            SG +L+    +FLV  NG+I+G HR  + F   +R+LRRAG+   FVS++    QR + I
Sbjct: 539  SGSDLYATSETFLVFLNGVIMGVHRNAEQFVSDLRRLRRAGRTSAFVSIYRTVSQRTINI 598

Query: 594  ASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
            +SDGGRVCRPL+I ++GI ++ E  ++ ++ G+  FDD + +G IEYLD NEE ++ IA+
Sbjct: 599  SSDGGRVCRPLIIVERGIPKVTEEDIRGIIHGILRFDDLIAQGKIEYLDTNEETDSDIAV 658

Query: 654  YEGDA---TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
                     P+TTH+EI PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL
Sbjct: 659  KINSVLIDQPNTTHLEIAPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIAYNQL 718

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             R+D+LLYL+VYP  P++ TRTIE++G+DKL AGQNATVAVMSYSGYDIEDA+V+NK+S+
Sbjct: 719  TRIDTLLYLMVYPHHPMVRTRTIEMIGFDKLPAGQNATVAVMSYSGYDIEDALVLNKASV 778

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDD 827
            DRG+GRC V++K + + + Y N T DR+  P     TG   ER            ILD+D
Sbjct: 779  DRGYGRCQVMRKSSTMIKSYPNQTFDRLADPVLDPLTGQVQERYN----------ILDND 828

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPT--GQTDSR----------------YRSA 869
            G+   GE + PN + INK++P ET   + +PT  G +D                  +++ 
Sbjct: 829  GICGVGERVYPNQIVINKQTPTETSPRVSAPTNGGGSDDESSAPMLGRAVDPSSIPFKNT 888

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
              ++K P     V+D+V L +++     IK LIR TRRPELGDKFSSRHGQKGVCG IV 
Sbjct: 889  PMSFKYPG--DAVIDQVLLTTNEEDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGIIVS 946

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
            QED PFSE G+ PD+IMNPHGFPSRMTVGKMIELL GKAG+  G+  YG+AFG       
Sbjct: 947  QEDMPFSENGVVPDVIMNPHGFPSRMTVGKMIELLAGKAGLFAGQVQYGTAFG-----GS 1001

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
             VE +S  LV++G+SY+GKDM+ SGITG PLQAYIF GP+YYQKLKHMV+DKMHAR  GP
Sbjct: 1002 KVEDMSRILVENGYSYSGKDMLTSGITGEPLQAYIFFGPVYYQKLKHMVMDKMHARSRGP 1061

Query: 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 1109
            R  LTRQPTEGR+R+GGLRVGEMERDCLI +GAS L+ ERL+ SSD ++V+VC  CG++G
Sbjct: 1062 RATLTRQPTEGRSRDGGLRVGEMERDCLIGHGASSLLIERLLYSSDAYDVEVCSRCGIIG 1121

Query: 1110 YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             ++     G C  CK    + ++K+PYACKLL QEL SMN+VPR+++
Sbjct: 1122 AWH-----GYCPFCKMRSGVVTVKMPYACKLLFQELMSMNVVPRVQV 1163


>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
 gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
          Length = 1211

 Score = 1256 bits (3250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1154 (53%), Positives = 804/1154 (69%), Gaps = 40/1154 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+++  I S IDP  
Sbjct: 76   KHLTDPINTERDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAEIRSDIDPKF 135

Query: 79   FLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +++F D+ +G P  T +      V   + P+ CRL DMTYAAPILV+ EYV+G    +  
Sbjct: 136  YIKFHDIYLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEYVRG----RQR 191

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 192  VKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTEKVILVQEQLS 251

Query: 194  KNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNRVI++TD K  I  ASVTSS+   KSK+ I M+KG++YL  N     IPI++++KAMG
Sbjct: 252  KNRVIVETDSKKEIVQASVTSSSHERKSKSYIIMKKGRIYLRHNVLNDDIPIVILLKAMG 311

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSP 307
            ++SD+E++ +V G D  Y      + EE   L I+TQ++ALEYL  ++K     S FG  
Sbjct: 312  IQSDKEMLLLVAGVDLEYQEDFAINFEEAIKLGIFTQQQALEYLGARIKINRKASGFGPA 371

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +    A   +  V +++V V + NFRPK  YV  M RR++ A L+   +DD+DYVGNK
Sbjct: 372  RRNYVAEAIEAISSVIISHVQVQDMNFRPKALYVTYMARRVLMAKLDPSLVDDRDYVGNK 431

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G+ R
Sbjct: 432  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNR 491

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 492  AIATGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 551

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLC  DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E     ++
Sbjct: 552  MLCTSDTPEGEACGLVKNLALMTHITTNDEEEPVQKLVFTLGAEDIQTVGGRECFGQGAY 611

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
            +V  NG  +   RRPK F +  R+LRR G+I EFVSVF+N  Q+ V++++D GR+CRPL+
Sbjct: 612  IVFMNGSPIALTRRPKYFLNAFRRLRRMGRISEFVSVFINHNQKSVHVSTDDGRICRPLI 671

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I +K  S++   H+  L  G   FDDFL  GL+EY+DVNEEN+A IA+YE +   +TTH+
Sbjct: 672  IVEKKRSKVTARHLSALRSGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDANTTHL 731

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ+
Sbjct: 732  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 791

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIEL  YDKL AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+A
Sbjct: 792  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 851

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR++ P R       + +  H      +LD+DGLAA GE + P +VYINK
Sbjct: 852  NLKSYSNGTKDRLVGPTRENG----VSIRKHG-----LLDNDGLAAVGEKVSPGEVYINK 902

Query: 846  ESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            E+P     S I         +Y    QTYK PD     +D+V + + +     IK   R 
Sbjct: 903  ETPDNALSSGITGSDAGLPVKYNPTPQTYKLPD--YSYIDKVMISTTEGESQLIKVQTRQ 960

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G I +Q D PF++ G+ PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 961  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1020

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAG+  G+F YG+ FG        VE +S  LV HGFSY GKD + SGITG PL  Y+
Sbjct: 1021 AGKAGIISGQFGYGTPFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYV 1075

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S 
Sbjct: 1076 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1135

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD  EV VC  CG +GY      +G C  CK    +  M +PYA KLL+QE
Sbjct: 1136 LLLERLMISSDRHEVDVCEGCGFMGY------SGWCQRCKTSAGVVKMVIPYAAKLLVQE 1189

Query: 1145 LQSMNIVPRLKLAE 1158
            L SMN+V RL+L +
Sbjct: 1190 LFSMNVVARLRLQD 1203


>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
            rotundata]
          Length = 1132

 Score = 1256 bits (3249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1130 (53%), Positives = 809/1130 (71%), Gaps = 26/1130 (2%)

Query: 28   VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRI 87
            + DK++L+P FLK +GLVKQH+DSFNYF+NT I+KIV+AN++++S  DP  ++++ +V +
Sbjct: 23   IQDKWKLVPAFLKGKGLVKQHIDSFNYFINTEIKKIVKANEKVLSDADPLFYVKYLNVHV 82

Query: 88   GQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            G P +     V+    PH CRL D+ Y+API V+IEY++G       + +N+++IGR+PI
Sbjct: 83   GSPDVEEGFNVTRPTTPHECRLRDLNYSAPITVDIEYIRGHQP----IIRNNLLIGRMPI 138

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            MLRS  CVL GK   ELA++ ECP DPGGYF+I G EKV+LIQEQ+ +NR+I++ D KG 
Sbjct: 139  MLRSSNCVLTGKSHFELAKMNECPHDPGGYFVINGQEKVILIQEQMLRNRIILEEDNKGC 198

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I AS  SST   K+KT I  + G+ Y+  N F   IP+ ++ KAMG+ SDQE++Q++G +
Sbjct: 199  IVASCNSSTHERKTKTNIIGKGGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGTE 258

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLAN 326
              +     PS+EEC  L+++ Q +AL +L  K K+  F    +        IL    L++
Sbjct: 259  EEFMKKFAPSLEECHVLNVFAQNQALRFLNNKRKQKRFSVIKSSITDEMKDILATNVLSH 318

Query: 327  VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKT 386
            VPV + NF+ K  Y+A+M+R++++A  +   +DD+DY GNKRLEL+G L+SL+FEDLFK 
Sbjct: 319  VPVVDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKR 378

Query: 387  MISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQ 446
               E+++  D  + K  ++++FD+ + + +D IT GL   +S+GN+ +KRFKM R G+TQ
Sbjct: 379  FNWELKQIADKNIPK-IKAAQFDIVKHMRQDQITNGLAFAISSGNWTIKRFKMERHGVTQ 437

Query: 447  VLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
            VL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGE CGLVKNLAL
Sbjct: 438  VLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLAL 497

Query: 507  MTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADV 566
            MTH+TT+ +E P+I L + LGVE++ +L GEE++N   ++V  NG ILG  +  +   +V
Sbjct: 498  MTHITTEIDEEPIIRLAFNLGVENVNILGGEEINNRKVYMVFLNGNILGIVKNYQRLVNV 557

Query: 567  MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV 626
             R LRR G I  FVS++   + RC+ I+SDGGR+CRP +I  KG   I+  H+K L  GV
Sbjct: 558  FRLLRRKGLINGFVSIYTQHQHRCIQISSDGGRLCRPYIIVQKGEPLIQAEHIKLLEHGV 617

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
            R F+DFL +GLIEYLDVNEEN++ IA  E      TTH+EIEPFT+LGV AGL+PYPHHN
Sbjct: 618  RCFEDFLNDGLIEYLDVNEENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHN 677

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y LVYPQ P++ +RTIEL+ +DKL AGQN
Sbjct: 678  QSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQAPMVKSRTIELINFDKLPAGQN 737

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VAVMSYSGYDIEDA+++NK+S+DRG+GRC++ +      ++YAN T DRI+ P     
Sbjct: 738  AIVAVMSYSGYDIEDALILNKASIDRGYGRCLIYRNAKCTLKRYANQTYDRIMGP--LID 795

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
               +  V  H      I+D DG+AAPGE+++   V +NK SP    G + S   QT + Y
Sbjct: 796  SNTKKSVWKHD-----IIDSDGIAAPGEMVENRKVMVNKSSPSVNIGPVNSGNVQTQTEY 850

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
            +     +KGP      V++V + S+      IK L+R TRRPE+GDKFSSRHGQKGV G 
Sbjct: 851  KDVPVVFKGP--VPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVTGL 908

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
            IV+QED PF++ GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G FHYG+AFG    
Sbjct: 909  IVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKAGVIKGEFHYGTAFG---- 964

Query: 987  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
                VE + E LVKHG++Y GKD  YSGITG PLQAYI+ GP+YYQKLKHMV DKMHAR 
Sbjct: 965  -GSKVEDVCEELVKHGYNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARS 1023

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GPR +LTRQPTEGRA+ GGLR+GEMERDCLI YGASM++ ERLM+SSD F++ +C  CG
Sbjct: 1024 RGPRAVLTRQPTEGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDICNKCG 1083

Query: 1107 LLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            L+ Y      +G C +C++   +S++ +PYACKLL QELQSMNIVPRL L
Sbjct: 1084 LMAY------SGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIVPRLTL 1127


>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
 gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
          Length = 1202

 Score = 1256 bits (3249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1157 (53%), Positives = 810/1157 (70%), Gaps = 43/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 64   KSLTDPINTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 123

Query: 79   FLRFKDVRIGQPSMTVDGVSE--------KLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
            ++RF D+ +G P    +  SE         + P+ CRL DMTYAAPILV+ EYV+G    
Sbjct: 124  YIRFHDIYLGSPRRADEEQSEDTRFKVESTITPNECRLRDMTYAAPILVDFEYVRG---- 179

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            +  +++N   IGR+P+MLRS +CVL  K   E+ +L ECPLDPGGYFI+ GTEKV+L+QE
Sbjct: 180  RQRVKRNGTAIGRMPVMLRSSKCVLSKKSPGEMYQLHECPLDPGGYFIVNGTEKVILVQE 239

Query: 191  QLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMK 249
            QLSKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++YL  N     +PI++++K
Sbjct: 240  QLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRIYLRHNVLSDDVPIVIILK 299

Query: 250  AMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTF 304
            AMG++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL   +K     ++F
Sbjct: 300  AMGIQSDKEMLLLVAGVDSVYQEDFAINFEESIKLGIYTQQQALEYLGSHIKIMRKPNSF 359

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G    +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYV
Sbjct: 360  GGVRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDPSLVDDRDYV 419

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVG 422
            GNKRLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G
Sbjct: 420  GNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIHGNHITQG 479

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            + R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPS
Sbjct: 480  MNRAISTGNWSLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPS 539

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
            Q+GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L Y LG ED++ + G E +  
Sbjct: 540  QFGMLCPADTPEGEACGLVKNLALMTHITTNDEEEPVRKLVYALGAEDVQAVGGREFYGQ 599

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
             ++++  NG  +   RRPK F +  R+LRR G++ EFVS+++N  Q  ++IA+D GR+CR
Sbjct: 600  GAYIIFLNGSPIALTRRPKFFLNSFRRLRRMGRVSEFVSIYINHHQSAMHIATDDGRICR 659

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            PL+I +K  SR+   H+ +L  G   FDDFL +GL+EYLDVNEEN++ I++YE +   +T
Sbjct: 660  PLIIVEKQKSRVTADHLSQLRSGEMEFDDFLAQGLVEYLDVNEENDSYISVYEREINENT 719

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VY
Sbjct: 720  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 779

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ+P++ TRTIELV YD+L AGQ+ATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V +K
Sbjct: 780  PQKPMVKTRTIELVKYDRLPAGQSATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVFRK 839

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            Y+A  + Y+N T DR+L PDR      R            +LD DGLAA GE +   +VY
Sbjct: 840  YSANLKSYSNGTKDRLLGPDRENGAPIRKHA---------LLDSDGLAAVGEKVSSGEVY 890

Query: 843  INKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            INK +P     S I          Y  + QTYK PD     +D+V + + +  +  +K  
Sbjct: 891  INKVTPENALSSGITGSDAGGPIAYIPSPQTYKLPD--PSYIDKVMISTTEGENQLLKVQ 948

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TRRPE+GDKFSSRHGQKGV G I +Q D PF+++GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 949  TRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKML 1008

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAGV  G+F YG+ FG        VE +S  LV  GFSY GKD + SGITG PL 
Sbjct: 1009 ELVVGKAGVLSGQFGYGTPFG-----GSPVEEMSAILVSKGFSYGGKDYLTSGITGEPLP 1063

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1064 AYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1123

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1124 TSQLLLERLMISSDRHEVDVCENCGFMGYL------GWCQRCKTSRGVVKMAIPYAAKLL 1177

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V R KLA+
Sbjct: 1178 VQELFSMNVVARFKLAD 1194


>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
 gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
          Length = 1137

 Score = 1255 bits (3248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1161 (53%), Positives = 822/1161 (70%), Gaps = 37/1161 (3%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG   VE +  D    D +  + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I
Sbjct: 6    MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILV 119
            +KIV+AN+ + SG DP  +L++ DVR+G+P +     +++   PH CRL D TY+API V
Sbjct: 64   KKIVKANELVTSGADPLFYLKYLDVRVGKPDIDEGFNITKATTPHECRLRDTTYSAPITV 123

Query: 120  NIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
            +IEY +G+      +++N+++IGR+P+MLR   C L GK E EL++L ECPLDPGGYF++
Sbjct: 124  DIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVV 179

Query: 180  KGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFV 239
            +G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N   
Sbjct: 180  RGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMT 238

Query: 240  KKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK- 298
              IPI+V+ KA+G+ SDQE+  ++G D +       S+ +  NL ++TQ++ALEY+  K 
Sbjct: 239  DDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLLDAYNLKVFTQQRALEYMGSKL 298

Query: 299  -VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
             VKR    +     E  A  +L    LA+VPV N N + K  YV++M+RR++ A L+K  
Sbjct: 299  VVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSLMVRRVMAAELDKTL 357

Query: 358  MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD 417
             DD+DY GNKRLEL+G L+S++FEDLFK M  E++   D  + K  ++++FD+ + +   
Sbjct: 358  FDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRAA 416

Query: 418  SITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
             IT GLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR
Sbjct: 417  QITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPR 476

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
            +LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + +  GVED+  +SG 
Sbjct: 477  SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGN 536

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             ++NPN FLV  NG +LG     K     +R +RR G++G +VSV  +  QRC+YI +DG
Sbjct: 537  PINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDG 596

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP VI +     +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E  
Sbjct: 597  GRLCRPYVIVENRRPLVKQHHLNELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQ 656

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
                TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+
Sbjct: 657  IEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLM 716

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYP  P++ ++TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC
Sbjct: 717  YNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRC 776

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
            +V K      ++YAN T DRI+ P +    A   +V+   +    +LD DG+ APGE ++
Sbjct: 777  LVYKNSKCTVKRYANQTFDRIMGPMK---DALTNKVIFKHD----VLDTDGIVAPGEQVQ 829

Query: 838  PNDVYINKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
               + INKE P  T    M+P  GQ+    Y +   +YKGP  E   V+RV + ++   D
Sbjct: 830  NKQIMINKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYVERVMVSANSEED 884

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              IK L+R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRM
Sbjct: 885  FLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRM 944

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK +ELLGGKAG+  G+FHYG+AFG        VE I   L +HGF+Y GKD  YSGI
Sbjct: 945  TVGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSGI 999

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG PL+AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERD
Sbjct: 1000 TGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERD 1059

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CLI+YGASMLI ERLM+SSD FEV VCR CG L Y         C  C++  N+S + +P
Sbjct: 1060 CLISYGASMLIMERLMISSDAFEVDVCRTCGRLAY------CSWCHFCQSSANVSKISMP 1113

Query: 1136 YACKLLIQELQSMNIVPRLKL 1156
            YACKLL QEL SMN+VP++ L
Sbjct: 1114 YACKLLFQELTSMNVVPKMIL 1134


>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
 gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
          Length = 1137

 Score = 1255 bits (3247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1161 (53%), Positives = 822/1161 (70%), Gaps = 37/1161 (3%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG   VE +  D    D +  + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I
Sbjct: 6    MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILV 119
            +KIV+AN+ + SG DP  +L++ DVR+G+P +     +++   PH CRL D TY+API V
Sbjct: 64   KKIVKANELVTSGADPLFYLKYLDVRVGKPDIDEGFNITKATTPHECRLRDTTYSAPITV 123

Query: 120  NIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
            +IEY +G+      +++N+++IGR+P+MLR   C L GK E EL++L ECPLDPGGYF++
Sbjct: 124  DIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVV 179

Query: 180  KGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFV 239
            +G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N   
Sbjct: 180  RGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMT 238

Query: 240  KKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK- 298
              IPI+V+ KA+G+ SDQE+  ++G D +       S+ +  NL ++TQ++ALEY+  K 
Sbjct: 239  DDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLLDAYNLKVFTQQRALEYMGSKL 298

Query: 299  -VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
             VKR    +     E  A  +L    LA+VPV N N + K  YV++M+RR++ A L+K  
Sbjct: 299  VVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSLMVRRVMAAELDKTL 357

Query: 358  MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD 417
             DD+DY GNKRLEL+G L+S++FEDLFK M  E++   D  + K  ++++FD+ + +   
Sbjct: 358  FDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRAA 416

Query: 418  SITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
             IT GLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR
Sbjct: 417  QITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPR 476

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
            +LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + +  GVED+  +SG 
Sbjct: 477  SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGN 536

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             ++NPN FLV  NG +LG     K     +R +RR G++G +VSV  +  QRC+YI +DG
Sbjct: 537  PINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDG 596

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP VI +     +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E  
Sbjct: 597  GRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQ 656

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
                TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+
Sbjct: 657  IEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLM 716

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYP  P++ ++TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC
Sbjct: 717  YNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRC 776

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
            +V K      ++YAN T DRI+ P +    A   +V+   +    +LD DG+ APGE ++
Sbjct: 777  LVYKNSKCTVKRYANQTFDRIMGPMK---DALTNKVIFKHD----VLDTDGIVAPGEQVQ 829

Query: 838  PNDVYINKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
               + INKE P  T    M+P  GQ+    Y +   +YKGP  E   V+RV + ++   D
Sbjct: 830  NKQIMINKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYVERVMVSANAEED 884

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              IK L+R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRM
Sbjct: 885  FLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRM 944

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK +ELLGGKAG+  G+FHYG+AFG        VE I   L +HGF+Y GKD  YSGI
Sbjct: 945  TVGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSGI 999

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG PL+AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERD
Sbjct: 1000 TGAPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERD 1059

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CLI+YGASMLI ERLM+SSD FEV VCR CG L Y         C  C++  N+S + +P
Sbjct: 1060 CLISYGASMLIMERLMISSDAFEVDVCRTCGRLAY------CSWCHFCQSSANVSKISMP 1113

Query: 1136 YACKLLIQELQSMNIVPRLKL 1156
            YACKLL QEL SMN+VP++ L
Sbjct: 1114 YACKLLFQELTSMNVVPKMIL 1134


>gi|348506052|ref|XP_003440574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Oreochromis
            niloticus]
          Length = 1040

 Score = 1255 bits (3247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1053 (58%), Positives = 775/1053 (73%), Gaps = 27/1053 (2%)

Query: 106  CRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELAR 165
            CRL DMTY+API V+IEY +GS      + +N + IGR+PIMLRS  CVL GK   E ++
Sbjct: 10   CRLRDMTYSAPITVDIEYTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPMEFSK 65

Query: 166  LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQ 225
            L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+I++ D+KG + ASVTSST   KS+T I 
Sbjct: 66   LNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQDRKGAVGASVTSSTHEKKSRTNII 125

Query: 226  MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI 285
            +++G+ YL  N   +  PI ++ K MG+ESDQE+VQM+G +    A   PS+EEC    I
Sbjct: 126  VKQGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEESVMASFAPSLEECQKAQI 185

Query: 286  YTQEKALEYLEGKVKRS-TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            +TQ +AL YL  KV+R   +G P   +   A  +L  + L +VPV   NFR KC Y+AVM
Sbjct: 186  FTQTQALRYLGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVM 245

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            +RR++ A    + +DD+DY GNKRLEL+GQL+SLLFEDLFK   +E++K  D I+ K  R
Sbjct: 246  VRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNAELKKIADQIIPK-QR 303

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            +++FD+ + + +D IT G+   +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S
Sbjct: 304  AAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRIS 363

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
             QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP+I L +
Sbjct: 364  SQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAF 423

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
             LGVED+ LL GEEL  P+ FLV  NG ILG  R  +   +  R +RRAG I EFVS+  
Sbjct: 424  NLGVEDVNLLCGEELSYPSVFLVFLNGNILGVIRDHQKLINTFRLMRRAGFINEFVSIST 483

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVN 644
            N   RCVYI+SDGGR+CRP +I  KG+  +K  H+++L  G R+F+DFL EGL+EYLDVN
Sbjct: 484  NLSDRCVYISSDGGRLCRPYIIVKKGVPMVKNKHIEDLSQGYRTFEDFLHEGLVEYLDVN 543

Query: 645  EENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            EEN+  IALYE     DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG 
Sbjct: 544  EENDCQIALYEYMINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 603

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
            I +NQ  R+D+L+YLL YPQRP++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V
Sbjct: 604  IGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALV 663

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +NK+SLDRGFGRC+V K      ++Y N T D+++ P      A R  +  HS     IL
Sbjct: 664  LNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGP--MLDAATRKPIWRHS-----IL 716

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D DG+ +PGE ++   V +NK  P  T+  +   T     +YR    +YKG       ++
Sbjct: 717  DADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQPQYRDVPISYKG--STDSYIE 774

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V + S+      IK L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+
Sbjct: 775  KVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDI 834

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            IMNPHG+PSRMTVGK+IELL GKAGV  GRFHYG+AFG        V+ + E L+++G++
Sbjct: 835  IMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLIRYGYN 889

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+
Sbjct: 890  YQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 949

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK
Sbjct: 950  GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCK 1003

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            +  ++SS+++PYACKLL QELQSMNI+PRLKL+
Sbjct: 1004 SSCHVSSLRIPYACKLLFQELQSMNIIPRLKLS 1036


>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
          Length = 1146

 Score = 1254 bits (3245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1162 (53%), Positives = 824/1162 (70%), Gaps = 39/1162 (3%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG   VE +  D    D +  + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I
Sbjct: 15   MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 72

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPIL 118
            +KIV+AN+ + SG DP  +L++ DVR+G+P +  DG  +++   PH CRL D TY+API 
Sbjct: 73   KKIVKANELVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPIT 131

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+IEY +G+      +++N+++IGR+P+MLR   C L GK E EL++L ECPLDPGGYF+
Sbjct: 132  VDIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFV 187

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
            ++G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N  
Sbjct: 188  VRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSM 246

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
               IPI+V+ KA+G+ SDQE+  ++G D +       S+ +  NL ++TQ++ALEY+  K
Sbjct: 247  TDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 306

Query: 299  --VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
              VKR    +     E  A  +L    LA+VPV N N + K  YV++M+RR++ A L+K 
Sbjct: 307  LVVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 365

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
              DD+DY GNKRLEL+G L+S++FEDLFK M  E++   D  + K  ++++FD+ + +  
Sbjct: 366  LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRA 424

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGP
Sbjct: 425  AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 484

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + +  GVED+  +SG
Sbjct: 485  RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSG 544

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              ++NPN FLV  NG +LG     K     +R +RR G++G +VSV  +  QRC+YI +D
Sbjct: 545  NPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTD 604

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
            GGR+CRP VI +     +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E 
Sbjct: 605  GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED 664

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                 TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL
Sbjct: 665  QIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSL 724

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            +Y LVYP  P++ ++TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GR
Sbjct: 725  MYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGR 784

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C+V K      ++YAN T DRI+ P +    A   +V+   +    +LD DG+ APGE +
Sbjct: 785  CLVYKNSKCTVKRYANQTFDRIMGPMK---DALTNKVIFKHD----VLDTDGIVAPGEQV 837

Query: 837  KPNDVYINKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNG 894
            +   + INKE P  T    M+P  GQ+    Y +   +YKGP  E   ++RV + ++   
Sbjct: 838  QNKQIMINKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEE 892

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
            D  IK L+R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSR
Sbjct: 893  DFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSR 952

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGK +ELLGGKAG+  G+FHYG+AFG        VE I   L +HGF+Y GKD  YSG
Sbjct: 953  MTVGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSG 1007

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            ITG PL+AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMER
Sbjct: 1008 ITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMER 1067

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCLI+YGASMLI ERLM+SSD FEV VCR CG + Y         C  C++  N+S + +
Sbjct: 1068 DCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAY------CSWCHFCQSSANVSKISM 1121

Query: 1135 PYACKLLIQELQSMNIVPRLKL 1156
            PYACKLL QEL SMN+VP++ L
Sbjct: 1122 PYACKLLFQELTSMNVVPKMIL 1143


>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=DNA-directed RNA
            polymerase III 128 kDa polypeptide; Short=C128
 gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
          Length = 1137

 Score = 1254 bits (3244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1162 (53%), Positives = 824/1162 (70%), Gaps = 39/1162 (3%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG   VE +  D    D +  + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I
Sbjct: 6    MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPIL 118
            +KIV+AN+ + SG DP  +L++ DVR+G+P +  DG  +++   PH CRL D TY+API 
Sbjct: 64   KKIVKANELVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPIT 122

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+IEY +G+      +++N+++IGR+P+MLR   C L GK E EL++L ECPLDPGGYF+
Sbjct: 123  VDIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFV 178

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
            ++G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N  
Sbjct: 179  VRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSM 237

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
               IPI+V+ KA+G+ SDQE+  ++G D +       S+ +  NL ++TQ++ALEY+  K
Sbjct: 238  TDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 297

Query: 299  --VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
              VKR    +     E  A  +L    LA+VPV N N + K  YV++M+RR++ A L+K 
Sbjct: 298  LVVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
              DD+DY GNKRLEL+G L+S++FEDLFK M  E++   D  + K  ++++FD+ + +  
Sbjct: 357  LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRA 415

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGP
Sbjct: 416  AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 475

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + +  GVED+  +SG
Sbjct: 476  RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSG 535

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              ++NPN FLV  NG +LG     K     +R +RR G++G +VSV  +  QRC+YI +D
Sbjct: 536  NPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTD 595

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
            GGR+CRP VI +     +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E 
Sbjct: 596  GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED 655

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                 TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL
Sbjct: 656  QIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSL 715

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            +Y LVYP  P++ ++TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GR
Sbjct: 716  MYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGR 775

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C+V K      ++YAN T DRI+ P +    A   +V+   +    +LD DG+ APGE +
Sbjct: 776  CLVYKNSKCTVKRYANQTFDRIMGPMK---DALTNKVIFKHD----VLDTDGIVAPGEQV 828

Query: 837  KPNDVYINKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNG 894
            +   + INKE P  T    M+P  GQ+    Y +   +YKGP  E   ++RV + ++   
Sbjct: 829  QNKQIMINKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEE 883

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
            D  IK L+R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSR
Sbjct: 884  DFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSR 943

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGK +ELLGGKAG+  G+FHYG+AFG        VE I   L +HGF+Y GKD  YSG
Sbjct: 944  MTVGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSG 998

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            ITG PL+AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMER
Sbjct: 999  ITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMER 1058

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCLI+YGASMLI ERLM+SSD FEV VCR CG + Y         C  C++  N+S + +
Sbjct: 1059 DCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAY------CSWCHFCQSSANVSKISM 1112

Query: 1135 PYACKLLIQELQSMNIVPRLKL 1156
            PYACKLL QEL SMN+VP++ L
Sbjct: 1113 PYACKLLFQELTSMNVVPKMIL 1134


>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
 gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
 gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
 gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
          Length = 1137

 Score = 1253 bits (3243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1162 (53%), Positives = 824/1162 (70%), Gaps = 39/1162 (3%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG   +E +  D    D +  + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I
Sbjct: 6    MGDHNMEATAWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPIL 118
            +KIV+AN+ + SG DP  +L++ DVR+G+P +  DG  +++   PH CRL D TY+API 
Sbjct: 64   KKIVKANELVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPIT 122

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+IEY +G+      +++N+++IGR+P+MLR   C L GK E EL++L ECPLDPGGYF+
Sbjct: 123  VDIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFV 178

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
            ++G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N  
Sbjct: 179  VRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSM 237

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
               IPI+V+ KA+G+ SDQE+  ++G D +       S+ +  NL ++TQ++ALEY+  K
Sbjct: 238  TDDIPIVVIFKALGVVSDQEIQSLIGLDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 297

Query: 299  --VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
              VKR    +     E  A  +L    LA+VPV N N + K  YV++M+RR++ A L+K 
Sbjct: 298  LVVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
              DD+DY GNKRLEL+G L+S++FEDLFK M  E++   D  + K  ++++FD+ + +  
Sbjct: 357  LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRA 415

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGP
Sbjct: 416  AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 475

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + +  GVED+  +SG
Sbjct: 476  RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSG 535

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              ++NPN FLV  NG +LG     K     +R +RR G++G +VSV  +  QRC+YI +D
Sbjct: 536  NPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTD 595

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
            GGR+CRP VI +     +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E 
Sbjct: 596  GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED 655

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                 TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL
Sbjct: 656  QIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSL 715

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            +Y LVYP  P++ ++TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GR
Sbjct: 716  MYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGR 775

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C+V K      ++YAN T DRI+ P +    A   +V+   +    +LD DG+ APGE +
Sbjct: 776  CLVYKNSKCTVKRYANQTFDRIMGPMK---DALTNKVIFKHD----VLDTDGIVAPGEQV 828

Query: 837  KPNDVYINKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNG 894
            +   + INKE P  T    M+P  GQ+    Y +   +YKGP  E   ++RV + ++   
Sbjct: 829  QNKQIMINKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEE 883

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
            D  IK L+R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSR
Sbjct: 884  DFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSR 943

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGK +ELLGGKAG+  G+FHYG+AFG        VE I   L +HGF+Y GKD  YSG
Sbjct: 944  MTVGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSG 998

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            ITG PL+AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMER
Sbjct: 999  ITGSPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMER 1058

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCLI+YGASMLI ERLM+SSD FEV VCR CG + Y         C  C++  N+S + +
Sbjct: 1059 DCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAY------CSWCHFCQSSANVSKISM 1112

Query: 1135 PYACKLLIQELQSMNIVPRLKL 1156
            PYACKLL QEL SMN+VP++ L
Sbjct: 1113 PYACKLLFQELTSMNVVPKMIL 1134


>gi|406863176|gb|EKD16224.1| DNA-directed RNA polymerase III polypeptide [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1214

 Score = 1253 bits (3243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1153 (53%), Positives = 814/1153 (70%), Gaps = 38/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + + AP+ +  DK+ LLP FLKV+GLVKQH+DSFN+F+ T I+ IV+AN R+ S +D   
Sbjct: 80   KDITAPINTAKDKWNLLPAFLKVKGLVKQHIDSFNFFIETEIKDIVKANKRVTSDVDQHF 139

Query: 79   FLRFKDVRIGQPSMTVD---GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            FL + DV IG P         +   + P+ CRL D+TYAAPI VNI+Y++G    K  + 
Sbjct: 140  FLEYTDVNIGMPDRVEQDDRNLQRAITPNECRLRDLTYAAPIRVNIKYIRG----KQVIH 195

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            + D+ IGR+PIMLRS +C L G D+ ++A + EC LDPGGYFI+ GTEKV+L+QEQLSKN
Sbjct: 196  RTDIAIGRLPIMLRSSKCRLSGGDDHDMAHMNECALDPGGYFIVNGTEKVILVQEQLSKN 255

Query: 196  RVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            RVI++TD KKG ++ASVTSST   KSK+ + ++K ++ L  N   + IPI++ +KA+G++
Sbjct: 256  RVIVETDVKKGIVSASVTSSTHERKSKSYVLLKKERIVLQHNILNEAIPIVIALKALGIQ 315

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSPPN 309
            SD E++ +V G D  Y      + EEC  + +++Q +ALE++  +VK    + T G+P  
Sbjct: 316  SDHEMLLLVAGTDSTYQDDFAVNFEECTKMGVFSQHQALEWIGTRVKMGSRKGTPGAPQR 375

Query: 310  -DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
             +    A   L  + + +VPVH  +FRPK  Y+  M+RR++ A  +   +DD+DYVGNKR
Sbjct: 376  RNHVADALEALSSIIITHVPVHGLDFRPKALYICFMVRRVLMANHDPKLVDDRDYVGNKR 435

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERT 426
            LEL+GQL+SLLFEDLFK   S+++  +D +L KP+R+ +FD    +    + IT G+ R 
Sbjct: 436  LELAGQLLSLLFEDLFKKFNSDLKMNIDKVLKKPNRTMQFDAFNHLQSHGNHITQGMNRA 495

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ VKRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GM
Sbjct: 496  ISTGNWSVKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGM 555

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGEACGLVKNLALMTH+TT++ E P+  L + LG ED+  +SG+E++   +++
Sbjct: 556  LCPSDTPEGEACGLVKNLALMTHITTNDLEEPVKKLVFVLGAEDIVSMSGKEIYEDGAYV 615

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG  L   R+PK F +  R+ RRAG++  FVS+F+N     V+IA+D GR+CRPL+I
Sbjct: 616  VFVNGTPLALTRKPKVFLNTFRRFRRAGRVSAFVSIFINHHTNAVHIATDEGRICRPLII 675

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             +   S++    ++ L  G   FDDFL  G +EY+DVNEEN++ IALYE +    +TH+E
Sbjct: 676  VENQKSKVTRRSLEALRAGKMDFDDFLYRGFVEYVDVNEENDSNIALYEKEIDETSTHLE 735

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G+IA+NQ  R+D+LLYL+VYPQ+P
Sbjct: 736  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGSIAYNQFSRIDTLLYLMVYPQQP 795

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ TRTIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS DRGFGRC V +K    
Sbjct: 796  MVKTRTIELIHYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSCDRGFGRCQVFRKNMIS 855

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +KY N + DRI   DR     +  + +        IL  DG+AA GE I   +V+ NKE
Sbjct: 856  LKKYPNRSYDRI--GDRVLDEKDPSKPIAKHR----ILTSDGIAAVGERIFSGEVFCNKE 909

Query: 847  SPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
            +PL T  + I S  G  D  Y+ A  +Y+  D     +D+V    +   D  IK   R T
Sbjct: 910  TPLNTISTGIGSDYGTND--YKPAPASYRAYD--FAYIDKVMTTQNDRDDTIIKVQTRQT 965

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPELGDKFSSRHGQKGV G IV QED PF++ G+CPD+IMNPHGFPSRMTVGKM+ELL 
Sbjct: 966  RRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGVCPDIIMNPHGFPSRMTVGKMLELLS 1025

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GKAGV  G   YG+AFG        V+ +   L+K+GFSY+GKD + SGITG PL AYIF
Sbjct: 1026 GKAGVLNGTLEYGTAFG-----GSNVDDMGAILIKNGFSYSGKDFVTSGITGEPLPAYIF 1080

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
             GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS L
Sbjct: 1081 FGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQL 1140

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERLM+SSD  EV +C  CGL+GY       G C TCK+   ++ M +PYA KLL+QE+
Sbjct: 1141 LLERLMLSSDAHEVDICETCGLMGY------QGWCQTCKSTRGVTKMTMPYAAKLLVQEM 1194

Query: 1146 QSMNIVPRLKLAE 1158
             SMN++ RLKLA+
Sbjct: 1195 LSMNVLVRLKLAD 1207


>gi|387191409|gb|AFJ68613.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
 gi|422292684|gb|EKU19986.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
          Length = 1197

 Score = 1252 bits (3240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1177 (54%), Positives = 836/1177 (71%), Gaps = 51/1177 (4%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGID 75
            ++ ++ PV  V DK++LLP FL++RGL++QH+DSF++FVN  I+ IV A  N  + S  D
Sbjct: 35   QEDVSKPVTDVADKWKLLPHFLQLRGLMRQHIDSFDFFVNREIKDIVNAASNRELRSEAD 94

Query: 76   PSIFLRFKDVRIGQPSMTVDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            P  +LR+ DV +G+PS+  D  VS ++ P  CRL D TY+API V++ Y +G    +  +
Sbjct: 95   PKFWLRYTDVHVGEPSVDDDAYVSSRVTPFQCRLRDCTYSAPITVDVRYTRG----RQIV 150

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K  V+IGRIPIMLRSC+C+L G+ EAELA   ECP DPGGYFI+KG E+V+L+QEQLSK
Sbjct: 151  VKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERVILMQEQLSK 210

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKG-KMYLLLNQFVKKIPIMVVMKAMGM 253
            NRVII+ D KGN++AS+TSST   K ++ I ++ G K+YL  N     +PI+VV+KAMGM
Sbjct: 211  NRVIIEEDNKGNVSASITSSTHDRKGRSNIFVKNGTKVYLKNNLLGDDVPIVVVLKAMGM 270

Query: 254  ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP----- 308
            +SDQE+V MVG  P       PS+EE  +L I TQ +AL Y+  K++ +T    P     
Sbjct: 271  QSDQEIVCMVGDSPEMLDAFAPSLEEPYHLGICTQAQALRYIGAKIRNTTQNRGPGPSGM 330

Query: 309  --------NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
                    +  E  A  +L  V L +VPV N +FR KC +V  ++RR++    ++  +DD
Sbjct: 331  GFAFYRRASSPEEEAREVLASVILNHVPVINFDFRTKCIFVCHVIRRVLLTHRDRSQLDD 390

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            KDY GNKRLEL+GQL+SLLFEDLFK +  +++K  D  LSKP+R+  FD+ + I  D+IT
Sbjct: 391  KDYYGNKRLELAGQLLSLLFEDLFKRLNVQLKKQADQGLSKPNRTQSFDVIKCIRTDTIT 450

Query: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480
             G  + ++TGN+ ++RF+M R+G+TQVL RLS+I  LG MTR++ QFEK+RKVSGPR+LQ
Sbjct: 451  NGFIQAIATGNWKLQRFRMDRQGVTQVLTRLSYISCLGMMTRINSQFEKTRKVSGPRSLQ 510

Query: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540
            PSQWGM+CP DTPEGEACGLVKNLAL+ HVTTDEE  P+  LC+ LG+ED+ LLSG E++
Sbjct: 511  PSQWGMICPADTPEGEACGLVKNLALLAHVTTDEESEPIRKLCFDLGIEDVTLLSGAEIN 570

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
              +++LV  NGLI+G H RP  F  ++R LRR G + EFVSV ++E QR +YIA+DGGRV
Sbjct: 571  ASSNYLVFLNGLIVGCHSRPLRFVRLLRLLRRKGLVAEFVSVCLHEVQRAIYIATDGGRV 630

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRPL++ +KG+ R+    M++L  G+ +  + +R G++EY+DVNEENN LIAL +   T 
Sbjct: 631  CRPLLVCEKGVPRLTNMMMRQLSSGLLTLAELIRCGVVEYVDVNEENNCLIALAQTQLTV 690

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
              TH+EI+P T+LGV+AGLIPYPHHNQSPRNTYQCAMGKQAMG +A NQ  R+DSLLY +
Sbjct: 691  KHTHMEIDPLTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQYERLDSLLYAM 750

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
            VYPQ+PL+TTRT++LV +++L  GQNA VAVMSYSGYDIEDA+V+NK+SLDRGFGRC+++
Sbjct: 751  VYPQKPLVTTRTLDLVNFNELPGGQNAIVAVMSYSGYDIEDAVVLNKASLDRGFGRCLIL 810

Query: 781  KKYTAINQKYANSTSDRILRPDR------TGPGAERMQVVHHSNLL-------------L 821
            +K+    +KYAN  +D +  P        +G G E       SNL               
Sbjct: 811  RKHQTSLRKYANGAADNLRGPPEDTAAVCSGMGGE--PSAAQSNLAGAYSIRRDPRLRRF 868

Query: 822  LILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETC 881
              LD DG+   GE +    V INKESP+      M  +G   + ++    +YKGP     
Sbjct: 869  EALDKDGICQVGERLGNGSVMINKESPISVADLNMG-SGADPTPFKPTPLSYKGPAPSH- 926

Query: 882  VVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 941
             VD+V + S++ GDL +K  +R  RRPE+GDKFSSRHGQKGVCG IV QED PF++ GIC
Sbjct: 927  -VDQVLITSNEGGDLLVKVSVRQCRRPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDDGIC 985

Query: 942  PDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKH 1001
            PDLIMNPHGFPSRMTVGK+IE + GKA V  GR  YG+AFGE  G AD V + S  LV++
Sbjct: 986  PDLIMNPHGFPSRMTVGKLIEFVAGKASVMIGRQAYGTAFGEDFGSADRVVACSGALVEN 1045

Query: 1002 GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGR 1061
            GFSY GK++I SG +G PL  YIF GP++YQKLKHMV+DKMHAR  GPR +LTRQPTEGR
Sbjct: 1046 GFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGR 1105

Query: 1062 ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS 1121
            +R+GGLR+GEMERDCLI YGAS L+ ERLM+SSD F   VC  CGLLGY      AG C 
Sbjct: 1106 SRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFTATVCERCGLLGY------AGWCQ 1159

Query: 1122 TCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            +C++ + ++ ++LPYACKLL QELQSMN++P+LKL E
Sbjct: 1160 SCRSSERMADIRLPYACKLLFQELQSMNVIPKLKLME 1196


>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
 gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
          Length = 1233

 Score = 1251 bits (3236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1157 (53%), Positives = 813/1157 (70%), Gaps = 43/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 95   KSLTDPINTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 154

Query: 79   FLRFKDVRIGQPSMTVDGVSE--------KLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
            ++RF D+ +G P    +  SE         + P+ CRL DMTYAAPILV+ EYV+G    
Sbjct: 155  YIRFHDIYLGSPRRADEEQSEDARFKIESTVTPNECRLRDMTYAAPILVDFEYVRG---- 210

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            +  +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QE
Sbjct: 211  RQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYLLHECPLDPGGYFIVNGTEKVILVQE 270

Query: 191  QLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMK 249
            QLSKNRVI++TD KK  + ASVTSS+   KSK+ + ++K ++YL  N     IP+++++K
Sbjct: 271  QLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYVILKKDRIYLRHNVLSDDIPVVILLK 330

Query: 250  AMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST----F 304
            AMG++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL   +K +     F
Sbjct: 331  AMGIQSDKEMLLLVAGVDSVYQEDFAINFEESIKLGIYTQQQALEYLGSHIKITRKPNGF 390

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G    +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYV
Sbjct: 391  GGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDYV 450

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVG 422
            GNKRLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G
Sbjct: 451  GNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIHGNHITQG 510

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            + R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPS
Sbjct: 511  MNRAISTGNWSLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPS 570

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
            Q+GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E +  
Sbjct: 571  QFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLVFALGAEDVQAVGGREFYGQ 630

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
             ++++  NG  +   RRPK F +  R+LRR G++ EFVSV++N  Q  V+IA+D GR+CR
Sbjct: 631  GAYIIFLNGSPIALTRRPKHFLNSFRRLRRMGRVSEFVSVYINHHQSAVHIATDDGRICR 690

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            PL+I +   S++ + H+  L +G   FDDFL +GL+EYLDVNEEN++ IA+YE +   +T
Sbjct: 691  PLIIVENQKSKVTDLHLGMLRNGTMEFDDFLAQGLVEYLDVNEENDSYIAVYENEINENT 750

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VY
Sbjct: 751  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 810

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ+P++ TRTIELV YDKL AGQ+ATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +K
Sbjct: 811  PQKPMVKTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 870

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            Y+A  + Y+N T DR+L PDR     + + +  H+     +LD+DGLAA GE +   +VY
Sbjct: 871  YSANLKSYSNGTKDRLLGPDRQ----DGVPIRKHA-----LLDNDGLAAVGEKVSSGEVY 921

Query: 843  INKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            INK +P     S I          Y  + QTYK PD     +D+V + + +  +  +K  
Sbjct: 922  INKATPENALSSGITGSDAGGPIAYIPSPQTYKLPD--PSYIDKVMISTTEGENQLLKVQ 979

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TRRPE+GDKFSSRHGQKGV G I +Q D PF+++GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 980  TRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKML 1039

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  L+  GF+Y GKD + SGITG  L 
Sbjct: 1040 ELVAGKAGILSGQFGYGTAFG-----GSPVEEMSAILISKGFNYGGKDYLTSGITGEALP 1094

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1095 AYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1154

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1155 TSQLLLERLMISSDRHEVDVCENCGFMGYL------GWCQRCKTSRGVVKMVIPYAAKLL 1208

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1209 VQELFSMNVVARLKLAD 1225


>gi|324502244|gb|ADY40989.1| DNA-directed RNA polymerase III subunit RPC2 [Ascaris suum]
          Length = 1135

 Score = 1250 bits (3235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1154 (53%), Positives = 806/1154 (69%), Gaps = 38/1154 (3%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS 77
            ++ L A VK++ DK+ L+P FL+VRGLVKQH+ SF+YF+N  I+ I+RAN+RI S ++PS
Sbjct: 4    QEDLTAEVKTLKDKWALVPAFLQVRGLVKQHIASFDYFINEDIKNILRANERITSDVNPS 63

Query: 78   IFLRFKDVRIGQPSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
             ++++ D+R+G PS       ++EK++PH CRL DMTY+API V+IEY +G+      + 
Sbjct: 64   FYVKYLDIRVGTPSSEEGFTQLNEKISPHECRLRDMTYSAPIQVDIEYTRGNQR----VL 119

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +N +VIGR+PIMLR  +CVL   +E ELAR+ ECP DPGGYFII+G+EKV+LIQEQLSKN
Sbjct: 120  RNGIVIGRMPIMLRCSKCVLKDMNEEELARVQECPYDPGGYFIIRGSEKVVLIQEQLSKN 179

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R++I  + K  +   V SST   KSKT +  +K + YL  NQ    IPI ++ KAMG ES
Sbjct: 180  RIMIGRNSKKELQCEVLSSTSDRKSKTYVISKKQRYYLKHNQLSDDIPIAIIFKAMGFES 239

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS----PPNDR 311
            D ++V  VG + ++ A + PSIEECA   I TQE AL+++  KVK   FG+    P   +
Sbjct: 240  DYDIVSAVGLEEKFVAAMAPSIEECAAHQIVTQESALQFIASKVKMRKFGTGGSGPTPPK 299

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            E  A   L  + + ++P H+ N + K  YV +M+RR+++A +     DD+D+ GNKRLEL
Sbjct: 300  EHEAIDFLTSLMICHIPSHDGNMKLKAIYVGLMVRRLMQAEMGYTECDDRDFYGNKRLEL 359

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L+ LLFED+FK   SE+++  D  L K + ++  D+ + + +D +T  +   ++TGN
Sbjct: 360  AGSLMGLLFEDVFKRFNSELKRIADNSLGK-TLAAPLDIVKHMRQDLVTNAMVNAIATGN 418

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRF+M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGMLCP D
Sbjct: 419  WIIKRFRMERHGVTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSD 478

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE+CGLVKNLAL++H+TTD +E P+I L Y  GVEDL+ L    +H+P   LV  NG
Sbjct: 479  TPEGESCGLVKNLALISHITTDSDEKPVIRLLYNSGVEDLQSLHFSLVHSPEYHLVFLNG 538

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             I+G    P+     +R +RR G + EFVSV  N  QR VYIASDGGR+CRP +I   G 
Sbjct: 539  AIVGITIDPQRIVSTIRAVRRNGLLSEFVSVSTNAAQRSVYIASDGGRLCRPYIIVTDGK 598

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             RI +H + EL  G R F+DF+ EGLIEYLDVNE N+A IA+YE     DTTH+EIEPFT
Sbjct: 599  PRITQHDIDELKKGHRIFEDFVDEGLIEYLDVNEMNDASIAVYENQIKADTTHLEIEPFT 658

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+YLLVYPQRPL+ ++
Sbjct: 659  LLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKSK 718

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIE+  ++KL AGQNA +AVMSYSGYDIEDA+V+NK+SLDRG+GRC+V K      +KY 
Sbjct: 719  TIEMCNFEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKGTAKKYP 778

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DR++ P  T     R  +  H      +LD +G+   G  I+   V INK  P+ +
Sbjct: 779  NQTFDRLMGP--TIEATTRKPIYKHQ-----VLDQEGIVFAGARIRSKQVMINKHMPIVS 831

Query: 852  -------RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
                   + S +   G  +  Y+    +Y+ P       +RV L  +++    IK ++R 
Sbjct: 832  LEASAVAQSSGVVQAGNRNVEYKDVSISYRSP--VPSYAERVLLTYNEDDAHLIKVVLRQ 889

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPELGDKFSSRHGQKGVCG I QQED PF++ G+CPD+IMNPHG+PSRMTVGK++ELL
Sbjct: 890  TRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELL 949

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GK  +  GRFHYG+AF       D V  + E L   GF+Y GKDM+ SGITG  L AYI
Sbjct: 950  SGKNAILSGRFHYGTAFA-----GDQVADVCEELAARGFNYLGKDMLTSGITGQQLSAYI 1004

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            + GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGASM
Sbjct: 1005 YFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASM 1064

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLMVSSD F V VC  CGL+GY       G C  C+    ++++K+PYACKLL QE
Sbjct: 1065 LLMERLMVSSDEFHVDVCSQCGLIGY------KGWCQKCRCSRTMATIKIPYACKLLFQE 1118

Query: 1145 LQSMNIVPRLKLAE 1158
            LQSMNIVP++ L +
Sbjct: 1119 LQSMNIVPKINLTK 1132


>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
            str. Silveira]
          Length = 1197

 Score = 1249 bits (3233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1157 (53%), Positives = 813/1157 (70%), Gaps = 43/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 59   KSLTDPINTEKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 118

Query: 79   FLRFKDVRIGQPSMTVDGVSE--------KLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
            ++RF D+ +G P    +  SE         + P+ CRL DMTYAAPILV+ EYV+G    
Sbjct: 119  YIRFHDIYLGSPRRADEEQSEDARFKIESTVTPNECRLRDMTYAAPILVDFEYVRG---- 174

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            +  +++N   IGR+P+MLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QE
Sbjct: 175  RQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYLLHECPLDPGGYFIVNGTEKVILVQE 234

Query: 191  QLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMK 249
            QLSKNRVI++TD KK  + ASVTSS+   KSK+ + ++K ++YL  N     IP+++++K
Sbjct: 235  QLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYVILKKDRIYLRHNVLSDDIPVVILLK 294

Query: 250  AMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST----F 304
            AMG++SD+E++ +V G D  Y      + EE   L IYTQ++ALEYL   +K +     F
Sbjct: 295  AMGIQSDKEMLLLVAGVDSVYQEDFAINFEESIKLGIYTQQQALEYLGSHIKITRKPNGF 354

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G    +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYV
Sbjct: 355  GGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDYV 414

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVG 422
            GNKRLEL+GQL++LLFEDLFK    +++  +D +L KP R+  FD    +    + IT G
Sbjct: 415  GNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIHGNHITQG 474

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            + R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPS
Sbjct: 475  MNRAISTGNWSLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPS 534

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
            Q+GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G E +  
Sbjct: 535  QFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLVFALGAEDVQAVGGREFYGQ 594

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
             ++++  NG  +   RRPK F +  R+LRR G++ EFVSV++N  Q  V+IA+D GR+CR
Sbjct: 595  GAYIIFLNGSPIALTRRPKHFLNSFRRLRRMGRVSEFVSVYINHHQSAVHIATDDGRICR 654

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            PL+I +   S++ + H+  L +G   FDDFL +GL+EYLDVNEEN++ IA+YE +   +T
Sbjct: 655  PLIIVENQKSKVTDLHLGMLRNGTMEFDDFLAQGLVEYLDVNEENDSYIAVYENEINENT 714

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VY
Sbjct: 715  THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 774

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ+P++ TRTIELV YDKL AGQ+ATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +K
Sbjct: 775  PQKPMVKTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 834

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            Y+A  + Y+N T DR+L PDR     + + +  H+     +LD+DGLAA GE +   +VY
Sbjct: 835  YSANLKSYSNGTKDRLLGPDRQ----DGVPIRKHA-----LLDNDGLAAVGEKVSSGEVY 885

Query: 843  INKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            INK +P     S I          Y  + QTYK PD     +D+V + + +  +  +K  
Sbjct: 886  INKATPENALSSGITGSDAGGPIAYIPSPQTYKLPD--PSYIDKVMISTTEGENQLLKVQ 943

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TRRPE+GDKFSSRHGQKGV G I +Q D PF+++GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 944  TRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKML 1003

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  L+  GF+Y GKD + SGITG  L 
Sbjct: 1004 ELVAGKAGILSGQFGYGTAFG-----GSPVEEMSAILISKGFNYGGKDYLTSGITGEALP 1058

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1059 AYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1118

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1119 TSQLLLERLMISSDRHEVDVCENCGFMGYL------GWCQRCKTSRGVVKMVIPYAAKLL 1172

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1173 VQELFSMNVVARLKLAD 1189


>gi|340376544|ref|XP_003386792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Amphimedon
            queenslandica]
          Length = 1131

 Score = 1248 bits (3229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1141 (53%), Positives = 820/1141 (71%), Gaps = 33/1141 (2%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR 81
            + P+K++ DK++LLP FLKV+GLVKQHLDSFNYFV+T I+KIVRAND ++S  DPS +L+
Sbjct: 16   SLPIKNIEDKWKLLPAFLKVKGLVKQHLDSFNYFVSTDIKKIVRANDLVISDFDPSFYLK 75

Query: 82   FKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            + D+ +G P +     V  ++ P  CRL DMTY+AP+ V+IEY +G+      + +    
Sbjct: 76   YLDIYVGTPLVEESLNVCTQITPQECRLRDMTYSAPVTVDIEYTRGTQR----VRRKGFS 131

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG++PIMLRS  CVL  K++ ELA+L ECP+DPGGYF+++GTEKV+LIQEQLSKNR+I+D
Sbjct: 132  IGQLPIMLRSANCVLSNKNQEELAKLKECPIDPGGYFVVRGTEKVILIQEQLSKNRIIVD 191

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
             DKKGNI  SVTSST   KSKT +  +  + YL  N F   IP+++V KAM + SDQE+V
Sbjct: 192  YDKKGNIGCSVTSSTHDRKSKTNLIFKGNQFYLKHNSFTDDIPVVLVFKAMNIISDQEIV 251

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
            QM+G +    ++  PS+EECA L++YTQ+KALE +  K ++  +G P +  E  A  +L 
Sbjct: 252  QMIGCEDSVLSVFAPSLEECAMLNVYTQKKALEVVGAKTRKRMYGKPRSKAE-EAHDVLS 310

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               LA++PV +N+F+ K  ++++M+RR++ A   KD +DD+DY GNKRLEL+G L+SLLF
Sbjct: 311  HYVLAHIPVESNDFKIKASFLSLMIRRVILATA-KDEVDDRDYYGNKRLELAGPLLSLLF 369

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
            EDLFK   SE++K +D  L+K  R+  FD+   +    IT G+E  LSTGN+ ++RFKM 
Sbjct: 370  EDLFKRYNSELKKIIDRTLAK-KRTQPFDVVCHMKNSIITQGIETALSTGNWTLRRFKME 428

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G+TQVL+R+SFI  LGHMTR++ QFEK+RK+SGPR+LQPSQWGM+CP DTPEGEACGL
Sbjct: 429  RGGVTQVLSRMSFIACLGHMTRITSQFEKTRKISGPRSLQPSQWGMVCPSDTPEGEACGL 488

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLAL++H+TTD +EGP+  L + LGVED+  LSGEEL +  S+LV+ NG I+G  R  
Sbjct: 489  VKNLALISHITTDVDEGPIRRLAFNLGVEDIRYLSGEELSSNESYLVLLNGNIVGVVRYY 548

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
              F    R LRR G++ EFVS+  N   R V I+SD GRVCRP +I   G+ R+  HH+ 
Sbjct: 549  ASFVRYFRLLRRNGRMNEFVSISTNHHNRTVSISSDSGRVCRPYIIVINGVPRVTSHHID 608

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             +  G+  F+DFL +GLIEYLDVNEEN+++IALYE D    TTH+EIEPFTILGV AGLI
Sbjct: 609  LISKGME-FEDFLAKGLIEYLDVNEENDSMIALYESDINSSTTHLEIEPFTILGVCAGLI 667

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL +++YPQ P++ TRTI+L+ +DK
Sbjct: 668  PYPHHNQSPRNTYQCAMGKQAIGTIAYNQQNRIDTLLNIMIYPQAPIVKTRTIDLIKFDK 727

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AG NA VA+M YSGYDIEDA+++N++SLDRG  R +V +K T   ++Y+N T D+IL 
Sbjct: 728  LPAGFNAVVAIMCYSGYDIEDALILNRASLDRGLARSLVCRKQTCSLKRYSNMTFDKILG 787

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG----SIM 856
            P R     +   +  H+      LD+DG+    E +    V INK  P  T+        
Sbjct: 788  PSREMDTGK--PIWKHTP-----LDEDGIVGVAERVSSGQVLINKLVPQVTQSLCPGGGG 840

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            +  G  D+ Y+S   +Y+GP       + V + ++      IK L+   R PE+GDKFSS
Sbjct: 841  AAAGGADNNYKSCPVSYRGP--TDVYANNVLITNNNEESYLIKILLESIRIPEIGDKFSS 898

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF+++G+CPD+IMNPHGFPSRMTVGK+IE++ GK G   G + 
Sbjct: 899  RHGQKGVCGLIVPQEDMPFTDQGLCPDIIMNPHGFPSRMTVGKLIEVIAGKTGALNGTYR 958

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            Y +AFG      D V  IS  L+ +GF+Y GKD++ SGITG PL+AYI+ G +YYQ+LKH
Sbjct: 959  YSTAFG-----GDKVSDISSDLISNGFNYVGKDILTSGITGEPLEAYIYTGIVYYQRLKH 1013

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MVLDKMHAR  GPRV+LTRQPTEGR+R+GGLR+GEMERDCLI+YG+ ML+ ERLM SSD 
Sbjct: 1014 MVLDKMHARSRGPRVILTRQPTEGRSRDGGLRLGEMERDCLISYGSCMLLRERLMTSSDE 1073

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            F+VQ+C  CGLL Y +       C  C++  +++S+K+PYA KLLIQE+QSMNI+PR+ L
Sbjct: 1074 FDVQICESCGLLAYNDW------CHYCQSSGSVTSIKIPYAFKLLIQEMQSMNIIPRIGL 1127

Query: 1157 A 1157
            +
Sbjct: 1128 S 1128


>gi|405122465|gb|AFR97232.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii H99]
          Length = 1123

 Score = 1247 bits (3227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1159 (54%), Positives = 815/1159 (70%), Gaps = 78/1159 (6%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKD 84
            VK+V DK+QLLP FLKV+GLVKQHLDSFNYFVN  I+ I+ AN  ++S I+P  ++R+ D
Sbjct: 18   VKTVEDKWQLLPAFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKYYIRYTD 77

Query: 85   VRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
            +R+G+P+    + V+  L+P  CRL+D TY+API V++EY+     E+   ++  V IG 
Sbjct: 78   IRVGRPARHDANQVASALSPMECRLTDSTYSAPIYVDVEYM----GEEKRSKQRGVQIGM 133

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +P+MLRS  C L GK+EAELAR+GECP+DPGGYF++KGTEKV+L+QEQLSKNR+++  DK
Sbjct: 134  LPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVVKGTEKVILVQEQLSKNRILVMKDK 193

Query: 204  KGNINASVTS------------STETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            K  + A VTS            ST     KT +  +  ++YL  N F + IPI++ +KAM
Sbjct: 194  KDEVMAEVTSLDQAGILIGLVDSTHDRVVKTYVVSKANRLYLRHNSFKEFIPIVIALKAM 253

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G+ +D+E++Q++ G D RY      S+EE A    +T+ +ALE++  +V     +   GS
Sbjct: 254  GLTADKEILQLICGSDERYQEAFGVSLEEAAKEKTFTRRQALEWIGARVSPNQAKDDSGS 313

Query: 307  ----PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
                 P+D   +A + +    L +VPV N NFRPKC Y+A M RR++ AM++   +DD+D
Sbjct: 314  NQKLTPSDIAQQALAAM---VLGHVPVRNMNFRPKCIYLATMSRRVLMAMIDDHMVDDRD 370

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSIT 420
            YVGNKRLEL+GQL+SLLFED FKT  SE++K +D IL KP+R+  FD    I +  D IT
Sbjct: 371  YVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNRAGPFDAGTLIRQGGDPIT 430

Query: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480
                R++STGN+ +KRF + R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQ
Sbjct: 431  QAFVRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQ 490

Query: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540
            PSQWGMLCP DTPEGEACGLVKNLALMTH+TTD  E PL+ L + LGVED+ L++G EL+
Sbjct: 491  PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVPEAPLVKLAFMLGVEDISLVTGNELY 550

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
             P   +V  NG ++G     K F    RKLRRAG++ EFVS+F+N   + +YIASDGGR+
Sbjct: 551  RPGVLMVQVNGTLIGVTNMAKRFVRQFRKLRRAGRMSEFVSIFINHHHKIIYIASDGGRI 610

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRP++I +KG SR+   H++ L +G  +FD FLR GL+EYLDVNEEN++ IA YE +   
Sbjct: 611  CRPMIIVEKGRSRVTTEHVRLLKEGKVTFDHFLRAGLVEYLDVNEENDSFIACYENEIEE 670

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
             TTH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+
Sbjct: 671  GTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLM 730

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
             YPQ+P++ T+TIEL+GY+KL AGQNATVAVMSYSGYDIEDA+++N++S+DRGFGRC V+
Sbjct: 731  TYPQQPMVKTKTIELIGYNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVL 790

Query: 781  KKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            KK T   + + N + +R   PD   P  +    V  +         DG+ APG  I   D
Sbjct: 791  KKVTTPMRTFHNGSHERTAYPD-PPPRPDAYTFVDKA---------DGMTAPGATINQYD 840

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            V I++E+P++TRG      G     Y+    T+K P  E  +VD+V L   ++G L IK 
Sbjct: 841  VMIHRETPVDTRGG-----GADTQLYKPMPVTHKTP--EPILVDKVMLTEGEDGAL-IKI 892

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            L R TRRPELGDKFSSRHGQKGVCG IV Q D PF+++GI PD+IMNPHGFPSRMTVGKM
Sbjct: 893  LTRQTRRPELGDKFSSRHGQKGVCGLIVPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKM 952

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IELL GKAGV  G+  YG+AFG        V  +S+ L+ +GFSY GKDM+ SGITG P+
Sbjct: 953  IELLSGKAGVVAGKLQYGTAFG-----GSKVVDMSQILIDNGFSYGGKDMLTSGITGQPM 1007

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            +AY++ GPIYYQKLKHMV+DKMHAR +GPR  LTRQPTEGR+++GGLR+GEMERDCLI Y
Sbjct: 1008 EAYVYFGPIYYQKLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGY 1067

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GA+ L+ ERLM+SSD FE Q                        +G  +  + +PYA KL
Sbjct: 1068 GATQLLLERLMISSDAFETQ------------------------SGKGVVGLTIPYAAKL 1103

Query: 1141 LIQELQSMNIVPRLKLAEA 1159
            LIQEL  MNI+P+L L + 
Sbjct: 1104 LIQELMGMNIMPKLCLEDT 1122


>gi|353234760|emb|CCA66782.1| probable DNA-directed RNA polymerase III, 130 KD subunit
            [Piriformospora indica DSM 11827]
          Length = 1118

 Score = 1247 bits (3226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1147 (54%), Positives = 815/1147 (71%), Gaps = 63/1147 (5%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFK 83
            P+KSV DK+ LLP FLKV+GLVKQH+DSFNYFV+  +R I+ AN ++ S +DP     F 
Sbjct: 23   PIKSVEDKWLLLPAFLKVKGLVKQHIDSFNYFVDYDLRAIMEANCKVTSDVDPRFHFLFT 82

Query: 84   DVRIGQP-SMTVDGVSEK--LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            D+R+G P S   D  +++  + PH CRL D TY+AP++V+IEY++    +   +++ DVV
Sbjct: 83   DIRVGTPVSEQADFANQRQPITPHQCRLRDATYSAPLMVDIEYIR----DNKRIQRKDVV 138

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IGRIPIMLRS +CVL G +E++LA + ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I++
Sbjct: 139  IGRIPIMLRSNKCVLAGANESQLAVMNECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVE 198

Query: 201  TDK-KGNINASVTSSTET-VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             D  K  I+ASVTSST + +KSKT + M KG + L  N F + IPI++ +KA+G++SD+E
Sbjct: 199  IDSAKSIISASVTSSTHSGLKSKTYVNMRKGLIVLKHNSFSEDIPIVIALKALGVQSDKE 258

Query: 259  VVQM-VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK---RSTFGSPPNDREGR 314
            ++ +  G    Y     P++EE +   +YT ++A E+L  +V+   R      PN  EG 
Sbjct: 259  ILLLCAGNTESYQEAFSPNLEESSRAGVYTIQQAREWLGARVRSMRRMVGPRRPNWEEG- 317

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
                L  + L +VPV N +   K  YVA M RR++ A  +   +DD+DYVGNKRLEL+GQ
Sbjct: 318  -LECLVMIVLTHVPVVNMDLSAKAIYVATMTRRVLMAHEDPKLVDDRDYVGNKRLELAGQ 376

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNF 432
            L++LLFEDLFK  +SE++K  D +L KP+R+S FD   +  +  + IT G  R +STGN+
Sbjct: 377  LLALLFEDLFKAYVSELKKAFDKVLGKPARTSAFDPHTTMLLHGNPITQGFIRAISTGNW 436

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 437  SLKRFRMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 496

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD EE PL+ +   LGVED++L +G E++ P SF+V  NGL
Sbjct: 497  PEGEACGLVKNLALMTHITTDVEEKPLVKIITLLGVEDIQLSTGSEIYGPTSFVVHLNGL 556

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            I+G  R P  F    RKLRRAG+I EFV +++N   + V IASDGGR+CRPL+I ++   
Sbjct: 557  IIGLTRFPSRFVAQFRKLRRAGRINEFVGIYINHHHKTVNIASDGGRICRPLIIVERMQP 616

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
            ++   H++ L  G  +F+DFL +GL+EY+DVNEEN++ IALYE D  P TTH+EIEPFTI
Sbjct: 617  KVTNEHIQMLKLGKLAFEDFLHQGLVEYVDVNEENDSHIALYEKDIEPSTTHLEIEPFTI 676

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLVYPQ+P++ T+T
Sbjct: 677  LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQQPMVKTKT 736

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IELVGYDKL AGQNATVA+MSYSGYDIEDA+++N++S++RG+GRC V +K TAI +KY N
Sbjct: 737  IELVGYDKLPAGQNATVAIMSYSGYDIEDALILNRASIERGYGRCQVFRKNTAIIRKYPN 796

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             T DR++ P + G   E++   +       ILDDDGLA PGE + P+DVY+NK+SP +T 
Sbjct: 797  GTYDRLVAPSKVG-TEEKLPKRYE------ILDDDGLARPGERVDPDDVYVNKQSPKDTV 849

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
             + ++        YR    TYK        +DRV +    N    +K LIR TR PELGD
Sbjct: 850  TNSLT-VNPAQVEYRPTPLTYK--TKVAGYIDRVMITDTDNDQALVKVLIRQTRIPELGD 906

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV QED PF+++GICPD IMNPHGFPSRMTVGKMIELL GKAGV  
Sbjct: 907  KFSSRHGQKGVVGLIVPQEDMPFNDQGICPDSIMNPHGFPSRMTVGKMIELLAGKAGVLR 966

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G   YG+AFG        VE +S+ L++HGFSY+GKDM+ SGITG PL+A          
Sbjct: 967  GTLEYGTAFG-----GSKVEDMSKILIEHGFSYSGKDMLTSGITGEPLEA---------- 1011

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
                           GPR +LTRQPTEGR+R+GGLR+GEMERDCL+ YGA+ L+ ERLM+
Sbjct: 1012 ---------------GPRAILTRQPTEGRSRDGGLRLGEMERDCLVGYGATQLLLERLMI 1056

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD F+V  C+ CGL+GY       G C  CK+   ++ + +PYA KLL QEL SMN+VP
Sbjct: 1057 SSDQFQVHACQTCGLMGY------NGWCPYCKSSKKMAQLTIPYAAKLLFQELISMNVVP 1110

Query: 1153 RLKLAEA 1159
            RL + +A
Sbjct: 1111 RLIMDDA 1117


>gi|392577194|gb|EIW70323.1| hypothetical protein TREMEDRAFT_29095 [Tremella mesenterica DSM 1558]
          Length = 1128

 Score = 1243 bits (3217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1157 (53%), Positives = 817/1157 (70%), Gaps = 57/1157 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            Q  A  +K+V DK+QLLP FL+V+GLVKQHLDSFNYFVN  I+ I+ AN  + S ++P  
Sbjct: 12   QYYAKGIKTVEDKWQLLPAFLQVKGLVKQHLDSFNYFVNVDIKAILAANSIVTSDVNPHF 71

Query: 79   FLRFKDVRIGQPSMTVDGVSEK--LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
            F+R+ D+RIG+P M  D   +   + P  CRL D++YAA I V+IEY   ++ +K   +K
Sbjct: 72   FIRYTDIRIGRP-MRKDQHHQDSIVTPMECRLRDISYAAEIRVDIEY---TYEDKLKKQK 127

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
              ++IG++P+MLRS  C L GK E ELAR+GECP DPGGYF++KGTEKV+L+QEQLSKNR
Sbjct: 128  G-ILIGKLPVMLRSDLCHLKGKSERELARMGECPKDPGGYFVVKGTEKVILVQEQLSKNR 186

Query: 197  VIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            +I+  D K G + A  TSST     KT +  +  ++YL  N F + IPI+V MKAMG+ +
Sbjct: 187  IIVMRDPKDGAVIAECTSSTHDRVVKTYVITKNKRLYLRHNSFKELIPIVVAMKAMGVTA 246

Query: 256  DQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            D+E++Q++ G D RY     PS+EE + L +YT ++  E++  +V      SP  ++E R
Sbjct: 247  DKEIIQLICGSDERYQEAFGPSLEEASRLKVYTAKQCAEWIGLRV------SPGQEKEDR 300

Query: 315  ---------AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
                     A   L  + L +V V N  FRPKC Y+A M RR++ A +++  +DD+DYVG
Sbjct: 301  GQKLAPSEVAMQALAAMVLGHVLVRNMFFRPKCIYLATMARRVLMASIDEKMVDDRDYVG 360

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGL 423
            NKRLEL+GQL+SLLFED FKT  S++++ +D IL KP+R++  D S  + +  DSIT   
Sbjct: 361  NKRLELAGQLLSLLFEDSFKTYNSDLRRRMDKILEKPNRATPLDASNILAQNGDSITSAF 420

Query: 424  ERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
             R++STGN+ +KRF + R G+T VL+RLSFI  LG MTR+S QFEK+RKVSGPRALQPSQ
Sbjct: 421  VRSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQ 480

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            WG+LCP DTPEGEACGLVKNLALMTH+TTD  EGPL+   +  G +D+   +G  ++   
Sbjct: 481  WGVLCPSDTPEGEACGLVKNLALMTHITTDVPEGPLVDYAFTYGAQDINTFTGVGMYGRG 540

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP 603
             +L+  NG ++G    PK F    RKLRRA +  EFVS+++N   + +YIASDGGR+CRP
Sbjct: 541  VYLIQINGSLIGLTNHPKKFVQTWRKLRRAARFSEFVSIYMNHHHKIIYIASDGGRICRP 600

Query: 604  LVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT 663
            ++I + G  R+   H++ L +G  +FD FLR GL+EYLDVNEEN++LIA YE +    TT
Sbjct: 601  MIIVENGRPRVTSEHIRLLKEGKVTFDHFLRSGLVEYLDVNEENDSLIACYEHEIEEGTT 660

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQL R+D+LLYL+ YP
Sbjct: 661  HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLMTYP 720

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            Q+P++ T+TIEL+ YDKL AGQNATVAVMS+SGYDIEDA+++NK+S+DRGFGRC V+KK 
Sbjct: 721  QQPMVKTKTIELIEYDKLPAGQNATVAVMSFSGYDIEDALILNKASVDRGFGRCHVLKKQ 780

Query: 784  TAINQKYANSTSDRILRP-DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            T   + + N TS+R   P D   P A              +   DG+ +PG  +   DV 
Sbjct: 781  TIPMRHFQNGTSERTAYPSDPLRPEA-----------YASVDKADGVTSPGSTVYQGDVL 829

Query: 843  INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            +++E+P++TRG    P  Q  + +++   T+K P  E   +D+V L   ++  L +K L 
Sbjct: 830  VHRETPIDTRG----PMTQA-AVFKATPITHKTP--EPVQIDKVMLTEGEDSPL-LKILT 881

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TR+PELGDKFSSRHGQKGVCG IV Q D PF+++GICPD+IMNPHGFPSRMTVGKMIE
Sbjct: 882  RQTRQPELGDKFSSRHGQKGVCGLIVPQTDMPFNDQGICPDIIMNPHGFPSRMTVGKMIE 941

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            LL GKAGV  G+  YG+AFG        VE +S  L+++GFSY GKDM+ SGITG PL+A
Sbjct: 942  LLAGKAGVLAGQLQYGTAFG-----GSKVEDMSRILIENGFSYAGKDMLTSGITGEPLEA 996

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y++ GPIYYQKLKHMV+DKMHAR +GPR  LTRQPTEGR+++GGLR+GEMERDCLI YGA
Sbjct: 997  YVYFGPIYYQKLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGA 1056

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            + L+ ERLM+SSD FE QVC  CGLLGY         C  CK G  I  + LPYA KLLI
Sbjct: 1057 TQLLLERLMISSDAFETQVCETCGLLGYNQW------CPKCKTGKGIVKITLPYAAKLLI 1110

Query: 1143 QELQSMNIVPRLKLAEA 1159
            QEL  MNI+P+L + +A
Sbjct: 1111 QELMGMNILPKLCMEDA 1127


>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1097

 Score = 1243 bits (3215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1140 (54%), Positives = 817/1140 (71%), Gaps = 57/1140 (5%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFK 83
            PV ++ +K++LLP FLK++GLV+QH++SFN+F+   I+KI+ AN ++ S  DP+ ++R+ 
Sbjct: 3    PVATLEEKWKLLPAFLKMKGLVRQHIESFNHFIEVDIKKILAANAKVTSDNDPNFYVRYL 62

Query: 84   DVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI 141
            D+R+  PS+  +G   +  + P  CRL   TYA  I+V++EY +G  T    +   +  I
Sbjct: 63   DIRVLPPSIN-EGFKTNNTVTPMQCRLRSATYAGDIVVDLEYRRGHET----LRVENTRI 117

Query: 142  GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT 201
            GR+PIMLRS  CVL G   A+ A+ GECP DPGGYF++ GTEKV+LIQEQLSKNR+I++ 
Sbjct: 118  GRMPIMLRSNLCVLNGASHAKQAKYGECPHDPGGYFVVSGTEKVILIQEQLSKNRIIVE- 176

Query: 202  DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
            + KG++ ASVTSS+   K+KT I  +  + Y+L+N   + +P++VV+KAMG+ SDQE++Q
Sbjct: 177  EFKGDLTASVTSSSADRKTKTTIIFKNDQFYMLVNTLSEAVPLVVVLKAMGVISDQEIMQ 236

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREGRAFSIL 319
            ++G +     +L PS+E CANL+I+TQ +AL YL  K+K  R+  G+   +  GR   +L
Sbjct: 237  LIGAEEEAMLVLGPSVERCANLNIFTQNQALAYLGSKIKLLRTYGGARTKEDMGR--DLL 294

Query: 320  RDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLL 379
              V LA+VP  N +FR K  ++++M+RR++ +M +K   DD+DY+GNKRLEL+G L+SLL
Sbjct: 295  SSVVLAHVPCENFDFRAKAVFLSLMVRRVIISMGDK-MTDDRDYLGNKRLELAGSLMSLL 353

Query: 380  FEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKM 439
            FED FK   +++++  D+ LSK +R + FD + F+  D IT  L   +S+GN+ +KRFKM
Sbjct: 354  FEDTFKNFNAQLKRQADVNLSK-NRVAAFDATNFMREDIITNSLRNAISSGNWILKRFKM 412

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             R G+T VL+RLSFI +LG MTR++ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACG
Sbjct: 413  ERHGVTSVLSRLSFIASLGMMTRITSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACG 472

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALMTHVT D+EE PL+ L Y LGVE L L++GEE    ++FLV  NGL+LG  RR
Sbjct: 473  LVKNLALMTHVTNDDEEEPLVKLAYNLGVESLHLINGEEFGRSSTFLVFINGLMLGVTRR 532

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM 619
            P+      R LRR+G+I  FVS+ +N+K RCVYIASD GR CRP +I + G S+++ HH+
Sbjct: 533  PRIMVRNFRLLRRSGRISPFVSISLNKKHRCVYIASDAGRTCRPYIIVENGKSKVRPHHL 592

Query: 620  KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGL 679
            +EL  G+ +FDDF+  GL+EYLDVNEEN++L+ALYE +   DTTH+EIEPFTILG  AGL
Sbjct: 593  EELNMGITTFDDFVINGLVEYLDVNEENDSLLALYENNIEADTTHLEIEPFTILGACAGL 652

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IPYP+HNQSPRNTYQCAMGKQAMG IA N   R+D+LLY LVYP RP++ TRTIEL+ ++
Sbjct: 653  IPYPNHNQSPRNTYQCAMGKQAMGVIALNYQQRIDTLLYSLVYPMRPVVKTRTIELIDFE 712

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            KL AGQN  VAVMS+SGYDIEDA VMN++S DRG+GRC+V  K     +KY  + +D I+
Sbjct: 713  KLPAGQNPIVAVMSFSGYDIEDATVMNRASFDRGYGRCVVYSKMQTSLKKYNGNLTD-II 771

Query: 800  RP---DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            RP   D  G                   +  G+ A G+ +   DV +NK++P++ RG   
Sbjct: 772  RPAPRDEAG-------------------NAKGIVAVGQPMYNRDVLVNKQTPIK-RG--- 808

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
                 T+  Y S +  YKG  G+    D+V + S+    + IK  +R TR PELGDKFSS
Sbjct: 809  -----TEIDYASTQVRYKGTVGKDAYCDQVMVSSNNEDSMLIKIRVRSTRIPELGDKFSS 863

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF++ G+CPD IMNPHGFPSRMTVGK++E  G KAGV  G ++
Sbjct: 864  RHGQKGVCGLIVNQEDMPFNDAGVCPDKIMNPHGFPSRMTVGKLMEFCGAKAGVLNGNYN 923

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            YG+AFG       T+  +  TL+KHG++Y+GKD + SGITG PL++YIFMGP++YQKLKH
Sbjct: 924  YGTAFG-----GTTIPEMCNTLLKHGYNYHGKDYLTSGITGEPLESYIFMGPVFYQKLKH 978

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV+DKMHAR  GP  +LTRQPTEGRAR GGLR+GEMERDCLI +G+SML+ ERLM+SSD 
Sbjct: 979  MVMDKMHARSQGPMTLLTRQPTEGRAREGGLRLGEMERDCLIGHGSSMLLLERLMISSDA 1038

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            FEV  C  CGLLG       AG C  CK+   IS ++LPYACKLL QELQSMNIVPRL L
Sbjct: 1039 FEVHACSQCGLLG------SAGWCQYCKSSRGISKLQLPYACKLLFQELQSMNIVPRLTL 1092


>gi|225678942|gb|EEH17226.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1232

 Score = 1241 bits (3212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1171 (53%), Positives = 811/1171 (69%), Gaps = 74/1171 (6%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 97   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 156

Query: 79   FLR--------------FKDVRIGQPSMTVD------GVSEKLNPHMCRLSDMTYAAPIL 118
            ++R              F D+ +G P    +        +  + P+ CRL DMTYA+PIL
Sbjct: 157  YIRSSAKTSHSVFRVFRFHDIYLGTPRRADEEQDSNFNAASTITPNECRLRDMTYASPIL 216

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+ EYV+G    +  +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI
Sbjct: 217  VDFEYVRG----RQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFI 272

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQ 237
            + GTEKV+L+QEQLSKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N 
Sbjct: 273  VNGTEKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYIILKKERIYVRHNV 332

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
              + +PI++++KAMG++SD+E++ +V G D  Y      + EE   L IYTQ +ALEY+ 
Sbjct: 333  LNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQEDFAINFEEAVKLGIYTQHQALEYIG 392

Query: 297  GKVK----RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
             ++K     + FG    +    A   +  V +++V V N NFRPK  YVA M RR++ A 
Sbjct: 393  SRIKINRKPNNFGVIRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAK 452

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQ 412
             +   +DD+DYVGNKRLEL+GQL+SLLFEDLFK    +++  +D +L KP R+ +FD   
Sbjct: 453  HDPSLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYG 512

Query: 413  FIV--RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
             +    + IT G+ R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+
Sbjct: 513  VVAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKT 572

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
            RKVSGPRALQPSQ+GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED
Sbjct: 573  RKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAED 632

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            ++ + G ELH   +++V  NG  +   RRPK F    R+LRR G++ EF+SVF+N  QR 
Sbjct: 633  VQTVGGRELHGQGAYIVFLNGSPIALTRRPKFFLHSFRRLRRTGRVSEFISVFINHHQRA 692

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNAL 650
            V+IA+D GR+CRPL+I + G S+++ HH++ L  G   FDDFL  GL+EYLD NEEN++ 
Sbjct: 693  VHIATDDGRICRPLIIVEDGKSKVQAHHLRALRSGSMEFDDFLAHGLVEYLDCNEENDSN 752

Query: 651  IALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
            IA+YE D    TTH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ 
Sbjct: 753  IAVYEDDIVDSTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQF 812

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             R+DSLLY +VYPQ+P++ TRTIEL+ YD+L AGQ ATVAVMSYSGYDIEDA+V+NK S+
Sbjct: 813  LRIDSLLYTMVYPQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSI 872

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            DRGFGRC V +KY+   + Y+N T D++  PDR       + V  H+     +LD+DGLA
Sbjct: 873  DRGFGRCQVFRKYSTNLKSYSNGTKDKLKGPDRENG----LPVRKHA-----LLDNDGLA 923

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVA 887
            A GE +   +VYINK +P     S +  TG    R   Y  + QTYK PD     +D+V 
Sbjct: 924  AVGEKVNHGEVYINKVTPENALSSGI--TGSDAGRPITYIPSPQTYKLPD--PSYIDKVM 979

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + S +  +  IK   R TRRPE+GDKFSSRHGQKGV G I +Q D PFS+ GI PD+IMN
Sbjct: 980  ISSTEAENQLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMN 1039

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PHGFPSRMTVGKM+EL+ GKAG+  G+F YG+AFG        VE +S  LVKHGFSY G
Sbjct: 1040 PHGFPSRMTVGKMLELVAGKAGILSGQFSYGTAFG-----GSPVEEMSAVLVKHGFSYGG 1094

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
            KD + SGITG  L AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGL
Sbjct: 1095 KDCLTSGITGESLPAYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGL 1154

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R+GEMERDCLIAYG S L+ ERLM+SSD +EV VC  CG +GY      +G C       
Sbjct: 1155 RLGEMERDCLIAYGTSQLLLERLMISSDQYEVDVCESCGFMGY------SGWCQR----- 1203

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
                       KLL+QEL SMN+V RLKLA+
Sbjct: 1204 ----------SKLLVQELFSMNVVARLKLAD 1224


>gi|348551951|ref|XP_003461792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cavia
            porcellus]
          Length = 1102

 Score = 1241 bits (3210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1143 (54%), Positives = 800/1143 (69%), Gaps = 60/1143 (5%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14   EQLAAPISTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74   YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI ++ KAMG+ESDQ
Sbjct: 190  IVEADRKGAVGASVTSSTHEKKSRTSMAVKQGRFYLRHNTLSEDIPIAIIFKAMGVESDQ 249

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
            E+VQM+G + R  A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250  EIVQMIGTEERVMAAFGPSLEECQKSQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369  LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428  RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVKNLALMTH+TTD E+GP++ L   LGVED+  L GEEL  PN FLV  NG ILG
Sbjct: 488  EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNFLCGEELSYPNVFLVFLNGNILG 547

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              R  +      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    + 
Sbjct: 548  VIRDHQKLVHTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE       + +          
Sbjct: 608  NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTVNKMLSFV---------- 657

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
                  +P+ N+               G I +NQ  R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 658  ------FPNINE---------------GTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 696

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T 
Sbjct: 697  IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 756

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D+++ P      A R  +  H      ILD DG+ +PGE +    V +NK  P  T+  +
Sbjct: 757  DKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVANKQVLVNKSMPTVTQIPL 809

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                     +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 810  EGSGAAQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 867

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRF
Sbjct: 868  SRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRF 927

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLK
Sbjct: 928  HYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 982

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD
Sbjct: 983  HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1042

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRL+
Sbjct: 1043 AFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLR 1096

Query: 1156 LAE 1158
            L++
Sbjct: 1097 LSK 1099


>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
            Af293]
 gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus Af293]
 gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus A1163]
          Length = 1200

 Score = 1240 bits (3209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1150 (53%), Positives = 807/1150 (70%), Gaps = 38/1150 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYF+   ++KIV ++  I S ID + 
Sbjct: 67   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDIDHTF 126

Query: 79   FLRFKDVRIGQP-------SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P        +T D     ++PH CRL D TYAAPILVN EY++G    +
Sbjct: 127  YIKFTDIYVGSPCRADEPQDVTPDATPSDVSPHECRLRDTTYAAPILVNFEYIRG----R 182

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+PIMLRS +CVL  K  +E+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 183  QRVTRKGVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 242

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI+++++A
Sbjct: 243  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDKLYVKHNVLSEDIPIVILLRA 302

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPP 308
            MG+ ++QE++ +V G D  Y      + EE   L IYTQ++AL+++  ++K      S  
Sbjct: 303  MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR 362

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
                  A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNKR
Sbjct: 363  RTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKR 422

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERT 426
            LEL+GQL++LLFEDLFK    +++  +D +L+K +R+ +FD    +   S  IT G+ R 
Sbjct: 423  LELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQGMNRA 482

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GM
Sbjct: 483  ISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGM 542

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED+  L G++L+ P S+ 
Sbjct: 543  LCPADTPEGEACGLVKNLALMTHITTNDEEGPIKNLVFMLGAEDIMALGGKQLYIPGSYT 602

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  Q  V+IA+D GR+CRPL++
Sbjct: 603  ISINGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIV 662

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G S +K+HH+++L DG   FDDFL +GL+EYLDVNEEN++LIALYE D T  TTH+E
Sbjct: 663  VENGRSLVKDHHLEKLRDGTMQFDDFLAQGLVEYLDVNEENDSLIALYEKDITDTTTHLE 722

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P
Sbjct: 723  IEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKP 782

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ +RTIELV YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY   
Sbjct: 783  MVKSRTIELVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN 842

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             + Y+N T DR L P     GA    +  H+     +L+ DGLAA GE +   +VYINK 
Sbjct: 843  LKSYSNGTKDR-LNPPTYENGAP---IRKHA-----LLEADGLAAVGEQVNAGEVYINKS 893

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P ++  S +        +Y     TYK  D     +D+V     +N +  +K L+R TR
Sbjct: 894  TPEQSNLSGIGSDAGRPVQYTPTPMTYKLHD--PAYIDKVMYSVQENENQLVKVLVRQTR 951

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPE+GDKFSSRHGQKGV G I  Q D PF++ GI PD+IMNPHGFPSRMTVGKM+EL+ G
Sbjct: 952  RPEVGDKFSSRHGQKGVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAG 1011

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G   YG+ FG        VE  S  L+ HGFSY GKD + SGITG  L  Y+F 
Sbjct: 1012 KAGVLAGHHGYGTCFG-----GTPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFT 1066

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S L+
Sbjct: 1067 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1126

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQEL 
Sbjct: 1127 LERLMISSDRHEIDVCEQCGFMGYLNW------CQRCKSSRSVVKMTIPYAAKLLIQELM 1180

Query: 1147 SMNIVPRLKL 1156
            SMN+  RLKL
Sbjct: 1181 SMNVTARLKL 1190


>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
          Length = 1134

 Score = 1240 bits (3208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1142 (53%), Positives = 811/1142 (71%), Gaps = 41/1142 (3%)

Query: 26   KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDV 85
            K++ DK++L+P FL+++GLVKQH+DSFNYF+N  I+ IVRAND + S  DP  +L++ +V
Sbjct: 20   KALEDKWKLVPAFLQIKGLVKQHIDSFNYFINVDIKNIVRANDEVKSDADPCFYLKYLNV 79

Query: 86   RIGQPSMTVDGV--SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
             IG P +  +G   ++   PH CRL DMTYAAPI V+IEY +G+      + +N+++IGR
Sbjct: 80   SIGMPDVE-EGFNNTKSTTPHECRLRDMTYAAPITVDIEYTRGTQR----VVRNNLLIGR 134

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +PIMLRS  CVL GK E EL+++ ECP+DPGGYF+I+GTEKV+LIQEQ+S N++I + D 
Sbjct: 135  MPIMLRSSNCVLTGKSEYELSQVNECPMDPGGYFVIRGTEKVILIQEQVSWNKMITE-DY 193

Query: 204  KGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
               I   VTSST   KS+T++  + GK YL  N   ++IP+ ++ KAMG+ SDQE++Q+V
Sbjct: 194  NNVIQCQVTSSTHEKKSRTILLSKHGKYYLKHNSMTEEIPVAIIFKAMGIASDQEIMQLV 253

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE---GRAFSILR 320
            G D        PS+ E  N  +YTQ++ALEY+  K+    F +     +     A  +L 
Sbjct: 254  GIDTETQKRFAPSLLEATNHKVYTQQRALEYMGSKLIAKRFTTAATKYKTTADEARDLLA 313

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               LA+VPV N NF+ K  YVA+M+RR++ A ++K A+DD+DY GNKRLEL+G L+SL+F
Sbjct: 314  TTILAHVPVPNFNFQVKAIYVALMIRRVMAAEVDKSAVDDRDYYGNKRLELAGSLLSLMF 373

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
            EDLFK    E++   D  + K  ++++FD+ + +    I+ GLE  +STGN+ +KRFKM 
Sbjct: 374  EDLFKRFNWELKMIADKNIPK-IKAAQFDVVKHMRAALISTGLETAISTGNWTIKRFKME 432

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGL
Sbjct: 433  RAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGL 492

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALMTH+TT+ +E P+I L Y  GVED+ LL GE ++NP  F+V  NG ILG     
Sbjct: 493  VKNLALMTHITTEVDEEPVIRLAYNSGVEDIRLLGGETINNPKVFMVFINGNILGVTIGY 552

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            K   +V R +RR G IG FVS+  +  QRCVYI +DGGR+CRP +I   G   +++ H++
Sbjct: 553  KRLVEVFRMMRRKGLIGSFVSIHTSFTQRCVYIHTDGGRLCRPYIIVQNGRPLVQQEHIE 612

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGL 679
            +L  G+R FDDFL +GLIEYLDVNEEN++ IA  E D  P+ TTH+E+EPFT+LGV AGL
Sbjct: 613  QLKIGLRKFDDFLHDGLIEYLDVNEENDSFIAYQEVDIDPEKTTHLEVEPFTLLGVCAGL 672

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            +PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y +VYPQ P++ +RTIEL  +D
Sbjct: 673  VPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTNFD 732

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            KL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++Y+N T DRI+
Sbjct: 733  KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIM 792

Query: 800  RPDRTGPGAERMQVVHHSNLLLL---ILDDDGLAAPGEIIKPNDVYINKESPL--ETRGS 854
                 GP  + +     +N ++     LD DG+ +PGE +      +NKE P    T   
Sbjct: 793  -----GPMKDSL-----TNKIIFKHECLDTDGIISPGEKVLSKQTMVNKEMPAVKSTNPI 842

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                 GQ    Y     TYKG   E   +++V + ++   +  +K L+R TRRPE+GDKF
Sbjct: 843  EQKEAGQQPITYSPVPITYKGT--EPSYIEKVMVSTNNEEEFLVKILLRQTRRPEIGDKF 900

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGV G IV+QED PF++ G+ PD++MNPHGFPSRMTVGK +ELLG KAGV  G+
Sbjct: 901  SSRHGQKGVTGLIVEQEDLPFNDFGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGK 960

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
            FHYG+AFG         + + + L K+GF++ GKD+ YSGITG PL+ YI+ GP+YYQKL
Sbjct: 961  FHYGTAFG-----GSKCQDLQDELFKNGFNFLGKDIFYSGITGEPLEMYIYSGPVYYQKL 1015

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV DKMHAR  GPR +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+SS
Sbjct: 1016 KHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISS 1075

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F+V VC VCG L Y      +  C  C++  ++S + +PYACKLL QEL SMNIVPRL
Sbjct: 1076 DAFDVDVCNVCGRLAY------SSWCHNCRSSASVSKISMPYACKLLFQELTSMNIVPRL 1129

Query: 1155 KL 1156
            KL
Sbjct: 1130 KL 1131


>gi|403334977|gb|EJY66659.1| RNA polymerase III [Oxytricha trifallax]
          Length = 1146

 Score = 1239 bits (3207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1152 (53%), Positives = 818/1152 (71%), Gaps = 30/1152 (2%)

Query: 14   QLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSG 73
            +L +  KL  P+K + DK++L+P FL++RGLVK H+DS+N+F+N  +++I+RAN  I S 
Sbjct: 19   ELFNDLKLNEPLKKIEDKWKLVPAFLRLRGLVKAHIDSYNHFLNVDLKEIIRANQFITSD 78

Query: 74   IDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            IDP+ +L+F D+ +G P +  D     L PH CR+ D+TY+API V IEY +G       
Sbjct: 79   IDPAFYLKFTDIHVGMPKIEEDFEQHNLMPHECRIRDLTYSAPIYVEIEYTKGDRI---- 134

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
              KN+V+IGR+P+ML +  C L G     LA + ECP DP GYFIIKG EKVLLIQEQ+S
Sbjct: 135  YLKNEVLIGRMPMMLGASNCWLNGMSHERLASIKECPYDPRGYFIIKGVEKVLLIQEQMS 194

Query: 194  KNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
            KNR+II+ D K N+ A VTSST   KS+T I  +  K YL  N F   IP++V  KAMGM
Sbjct: 195  KNRIIIELDSKQNVCAQVTSSTYERKSRTTIVHKNDKFYLKHNTFTDDIPVVVAFKAMGM 254

Query: 254  ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR-STFGSPPNDRE 312
            E+DQE+ Q++G + +Y   L  S++E + L+I +Q +ALE++  KVK   +F   P  + 
Sbjct: 255  ETDQEIAQIIGTEAKYLDGLALSLQEASQLNILSQAQALEFIANKVKSLKSFQGRPKTKL 314

Query: 313  GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
              A  IL +V LA++P+  +  +  KC Y+ +M+RR++EA+ +   +DDKDY GNKRLEL
Sbjct: 315  EEARDILTNVVLAHIPMSAHLPYFAKCRYLGMMIRRIIEAVHDPSKLDDKDYYGNKRLEL 374

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            SGQL+SLLFEDLFK    +++K +DI+L K  +  +FD    I  D+IT GLE ++S+GN
Sbjct: 375  SGQLISLLFEDLFKKFQFDLKKQIDIMLVK-QKKEKFDALTCIKPDTITQGLEMSISSGN 433

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM RK +TQVL+RLS+I  LG M R++ QFEK+RK+SGPRALQPS WG++CP D
Sbjct: 434  WSLKRFKMERKSVTQVLSRLSYIAALGMMARINSQFEKTRKISGPRALQPSHWGIICPSD 493

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE+CGLVKNLAL THVTTD  E PL+ +C  LG+ED  LL G+EL++ N FLV  NG
Sbjct: 494  TPEGESCGLVKNLALTTHVTTDSPEKPLLRICIDLGMEDAALLGGDELYSKNHFLVFLNG 553

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
              +G  ++P  F    R LR+ G++ EFVSV+++E+Q  + IASD GR+ RPL++ ++G 
Sbjct: 554  QPIGVVKQPHKFVRNFRFLRKRGRVQEFVSVYMSEQQNTINIASDAGRLVRPLIVIERGR 613

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             ++++  +++L+ G+R F+DFLREGL+EYLDVNEENNALIAL E   T   TH+EI+P T
Sbjct: 614  PKLQQSQIQDLILGLRDFNDFLREGLLEYLDVNEENNALIALNENALTQAHTHMEIDPLT 673

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G+I  NQL R+D+LL+LL +PQ+PL+ T+
Sbjct: 674  ILGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGSIGLNQLNRVDTLLFLLTHPQKPLVKTK 733

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIE++ +++L AGQNA+VA+MSYSGYDIEDA+V+NK+SLDRGF R + +++Y    +KY+
Sbjct: 734  TIEIINFEELPAGQNASVAIMSYSGYDIEDAVVLNKASLDRGFARAMYIRRYQTDIKKYS 793

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-- 849
            N  +D IL      PG  +       N     LD+DG+A  GE ++  DV+INK +P+  
Sbjct: 794  NGATDIIL------PGVSQKDQKRAFNKKFHALDEDGMARVGESLQNGDVFINKYTPVMG 847

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            E +   ++    T   Y+S  Q+YKG +     VDRV + S       IK + R +R PE
Sbjct: 848  ENQTGYLNEIDLTTLEYKSQAQSYKGAN--PAYVDRVIMTSTPENPFFIKMITRQSRVPE 905

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSER-GICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            +GDKFSSRHGQKGV G IV QED PFSER G CPDLIMNPHGFPSRMTVGKMIEL+ GKA
Sbjct: 906  IGDKFSSRHGQKGVVGLIVPQEDLPFSERNGWCPDLIMNPHGFPSRMTVGKMIELISGKA 965

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G F YG+AF       D VE + + L+KHG+S++GKD++ SGITG  L  ++F GP
Sbjct: 966  GVLEGEFKYGTAFS-----GDPVEEMGKLLIKHGYSFDGKDVLMSGITGEVLPCFVFSGP 1020

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQ+LKHMV DKMH+R  GP+ +LTRQPTEGR+R GGLR+GEMERDCLI YGA+ LI E
Sbjct: 1021 IYYQRLKHMVQDKMHSRARGPKSVLTRQPTEGRSREGGLRLGEMERDCLIGYGAANLIME 1080

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK-NGDNISSMKLPYACKLLIQELQS 1147
            RLM+SSD F V +C  CG LGY  H      C  C  + DN+ S+K+PYACKLL+QELQS
Sbjct: 1081 RLMISSDQFVVYICNRCGFLGYEGH------CVYCNPHHDNVCSVKMPYACKLLLQELQS 1134

Query: 1148 MNIVPRLKLAEA 1159
            MNI  ++KL + 
Sbjct: 1135 MNIRAQIKLTDV 1146


>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
            [Tribolium castaneum]
 gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
          Length = 1122

 Score = 1237 bits (3200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1147 (53%), Positives = 812/1147 (70%), Gaps = 41/1147 (3%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D   L  P+K + +K++L+P FLKV+GLVKQH+DSFNYF+N  I+KIV AN+++V   DP
Sbjct: 5    DPALLKKPIKEIEEKWKLVPAFLKVKGLVKQHIDSFNYFINVDIKKIVEANNKLVCDADP 64

Query: 77   SIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              ++++ +V +G+P +     +S+   PH CRL DMTY+API V+IEY +G+      + 
Sbjct: 65   LFYVKYTNVYVGRPDVDEGFNISKPTTPHECRLRDMTYSAPISVDIEYTRGTQR----VS 120

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            K  ++IGR+PIMLRS  CVL  K E ELA++ ECPLDPGGYF++KG EKV+LIQEQLSKN
Sbjct: 121  KAGLMIGRMPIMLRSSNCVLTNKSEYELAKMNECPLDPGGYFVVKGQEKVILIQEQLSKN 180

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+I++  K G +  +VTSST   KS+T +  +  K YL  N     +P+ ++ KA+ + S
Sbjct: 181  RMIVEESKFG-VQCAVTSSTHEKKSRTNVVCKANKYYLGHNSLTDLVPVSIIFKALDVTS 239

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV---KRSTFGSPPNDRE 312
            D+E+ +++G +    + L P++EEC  L IYTQ  AL+++  K+   +  T  S      
Sbjct: 240  DKEICELIGVED--ISKLTPTLEECHTLKIYTQLGALKHIGSKLVAKRYVTSASKMKTPV 297

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A  +L    LA+VPV N NFR K  Y+ VM++R++EA  +K  MDDKDY GNKRLEL+
Sbjct: 298  DEARDVLATTVLAHVPVENYNFRMKAIYLGVMVKRVIEAQSDKKFMDDKDYYGNKRLELA 357

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L+SL+FED+FK    E++   +  + K  R+++FD+ +++  D IT  L   +STGN+
Sbjct: 358  GSLLSLMFEDVFKRFNWELKSIAEKTIPK-IRATQFDVVKYMRSDLITNCLVYAISTGNW 416

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRF+M R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DT
Sbjct: 417  TIKRFRMERLGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDT 476

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD +E PLI L    GV D+ + SG  +H+P +F V  NG 
Sbjct: 477  PEGEACGLVKNLALMTHITTDVDEYPLIRLANNAGVVDINMSSGMSIHSPETFFVFLNGN 536

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ILG  R  K      R LRR+G I  +VS++ N   RC+YI+SDGGR+CRP +I ++G  
Sbjct: 537  ILGTIRNYKKLIHTFRMLRRSGLISGYVSIYPNFLHRCIYISSDGGRLCRPYIIVERGRP 596

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             + ++H+ EL  G+RSF+DFL +GLIE+LDVNEEN++ IA YE D T  TTH+EI  FT+
Sbjct: 597  LVTQNHIIELEKGIRSFEDFLHDGLIEFLDVNEENDSFIACYEKDITDLTTHLEIATFTL 656

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  RMD+LLY LVYPQ P++ T++
Sbjct: 657  LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRMDTLLYSLVYPQAPMVKTKS 716

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL  +DKL AGQNAT+AVMSYSGYDIEDA+++NK+S+DRGFGRC+V K    + ++YAN
Sbjct: 717  IELTNFDKLPAGQNATIAVMSYSGYDIEDALIINKASIDRGFGRCLVYKNSKCVMKRYAN 776

Query: 793  STSDRILRP--DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
             T DRI  P  D T        +  H+     +LD DG+ APGE +    V +NK  P  
Sbjct: 777  QTFDRIQGPLIDTTTNAP----MWKHA-----VLDMDGIVAPGESVDNKQVLVNKSVP-- 825

Query: 851  TRGSIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            T  ++  P  QT S  Y+     Y+  + E   +++V + +++     IK L+R TRRPE
Sbjct: 826  TVSAV--PGSQTTSVEYKDTPICYR--NNEPSYIEKVLVSTNEEDTTIIKILLRQTRRPE 881

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGV G +V+QED PF+E GICPD+IMNPHG+PSRMTVGK+IELL GKAG
Sbjct: 882  IGDKFSSRHGQKGVVGLVVEQEDMPFNEYGICPDIIMNPHGYPSRMTVGKLIELLAGKAG 941

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            +  G+FHYG+AFG        V  + E L KHGF+Y GKD  YSGITG PL+AYI+ GP+
Sbjct: 942  LVEGKFHYGTAFG-----GSKVNDVCEELAKHGFNYQGKDFFYSGITGEPLEAYIYSGPV 996

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMV DK+HARG GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASM++ ER
Sbjct: 997  YYQKLKHMVQDKIHARGRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMMLIER 1056

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LMVSSD  EV VC +CG LGY       G C++CK+   +SS+ +PYACKLL+ ELQ+MN
Sbjct: 1057 LMVSSDQCEVDVCNLCGRLGY------CGWCNSCKSSREVSSITMPYACKLLLTELQAMN 1110

Query: 1150 IVPRLKL 1156
            I  RL L
Sbjct: 1111 ITARLTL 1117


>gi|431905258|gb|ELK10303.1| DNA-directed RNA polymerase III subunit RPC2 [Pteropus alecto]
          Length = 1207

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1056 (57%), Positives = 766/1056 (72%), Gaps = 28/1056 (2%)

Query: 105  MCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELA 164
            +CRL DMTY+API V+IEY +GS      + +N + IGR+PIMLRS  CVL GK  AE A
Sbjct: 175  VCRLRDMTYSAPITVDIEYTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPAEFA 230

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVI 224
            +L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+I++ D+KG + ASVTSST   KS+T +
Sbjct: 231  KLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSRTNM 290

Query: 225  QMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLD 284
             +++G+ YL  N   + IPI+++ KAMG+ESDQE+VQM+G +    A   PS+EEC    
Sbjct: 291  AVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQ 350

Query: 285  IYTQEKALEYLEGKVKRSTF--GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
            I+TQ +AL+Y+  KV+R     G P   +   A  +L    L +VPV   NFR KC Y A
Sbjct: 351  IFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTA 410

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
            VM+RR++ A    + +DD+DY GNKRLEL+GQL+SLLFEDLFK   SE++K  D ++ K 
Sbjct: 411  VMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK- 468

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
             R+++FD+ + + +D IT G+   +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR
Sbjct: 469  QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTR 528

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
            +S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP++ L
Sbjct: 529  ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKL 588

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               LGVED+ LL GEEL  PN FLV  NG ILG  R  K   +  R +RRAG I EFVS+
Sbjct: 589  ASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSI 648

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLD 642
              N   RCVYI+SDGGR+CRP +I  K    +   HM+EL  G R+F+DFL E L+EYLD
Sbjct: 649  STNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLD 708

Query: 643  VNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
            VNEEN+  IALYE     DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAM
Sbjct: 709  VNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAM 768

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA
Sbjct: 769  GTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDA 828

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            +V+NK+SLDRGFGRC+V K      ++Y N T D+++ P      A R  +  H      
Sbjct: 829  LVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGP--MLDAATRKPIWRHE----- 881

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
            ILD DG+ +PGE ++   V +NK  P  T+  +         +Y+    TYKG       
Sbjct: 882  ILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKG--ATDSY 939

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            +++V + S+      IK L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICP
Sbjct: 940  IEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICP 999

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG+AFG        V+ + E LV+HG
Sbjct: 1000 DIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHG 1054

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            ++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMH R    +  L  QPTEGR+
Sbjct: 1055 YNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHGRRRRSKQPLFGQPTEGRS 1114

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC  CGLLGY      +G C  
Sbjct: 1115 RDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHY 1168

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            CK+  ++SS+++PYACKLL QELQSMNI+PRLKL++
Sbjct: 1169 CKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 1204



 Score = 71.6 bits (174), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 12/87 (13%)

Query: 19  QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
           ++LAAP+ +V           +V+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14  EQLAAPIPTV-----------EVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 62

Query: 79  FLRFKDVRIGQPSMTVD-GVSEKLNPH 104
           +L++ ++ +G P +     V+  ++PH
Sbjct: 63  YLKYLNIYVGLPDVEESFNVTRPVSPH 89


>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
          Length = 1134

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1142 (53%), Positives = 814/1142 (71%), Gaps = 41/1142 (3%)

Query: 26   KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDV 85
            +++ +K++L+P FL+V+GLVKQH+D+FNYF+N  I+KIV+AN  + S  DP  +L++ +V
Sbjct: 20   RALEEKWKLVPAFLQVKGLVKQHIDAFNYFINVDIKKIVQANQEVKSDADPCFYLKYLNV 79

Query: 86   RIGQPSMTVDGV--SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
             +G+P +  +G   ++   PH CRL DMTY+API V++EY +G+      + +N ++IGR
Sbjct: 80   HVGKPDVE-EGFNNTKSTTPHECRLRDMTYSAPITVDVEYTRGTQR----VVRNGLLIGR 134

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +PIMLRS  C+L GK + EL+++ ECP+DPGGYFII+GTEKV+LIQEQLS N++I + D 
Sbjct: 135  MPIMLRSSNCILNGKSDYELSQVNECPMDPGGYFIIRGTEKVILIQEQLSWNKMITE-DY 193

Query: 204  KGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
             G I   VTSST   KS+T++  + G+ YL  N   ++IP+ +++KAMG+ SDQE++Q+V
Sbjct: 194  NGLIQCQVTSSTHEKKSRTILYSKHGRYYLKHNSMTEEIPVAIILKAMGVASDQEIMQLV 253

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV---KRSTFGSPPNDREGRAFSILR 320
            G D        PS+ E A   +YTQ++ALEY+  K+   + +T  +        A  +L 
Sbjct: 254  GIDQETQKRFAPSLLEAAKHKVYTQQRALEYMGSKLIAKRFTTAATKYRTTADEARDLLA 313

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               LA+VPV + NF+ K  YVA+M+RR++ A L++ A+DD+DY GNKRLEL+G L+SL+F
Sbjct: 314  TTILAHVPVRSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMF 373

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
            EDL K    E++   D  + K  ++++FD+ + +    IT GLE  +STGN+ +KRFKM 
Sbjct: 374  EDLLKRFNWELKMIADKNIPK-IKAAQFDVGKHMREALITSGLETAISTGNWTIKRFKME 432

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGL
Sbjct: 433  RAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGL 492

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALMTH+TT+ +E P+I L Y  GVED+ L+ GE ++NP  F+V  NG ILG     
Sbjct: 493  VKNLALMTHITTEVDEEPVIRLAYNAGVEDIRLIGGETINNPKVFMVFINGNILGVTIAY 552

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            +   +V R +RR G IG FVS+  +  QRCVYI +DGGR+CRP +I   G+  + + H++
Sbjct: 553  RRLVEVFRMMRRRGLIGAFVSIHTSFTQRCVYIHTDGGRLCRPYIIVQAGLPLVLQEHIE 612

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGL 679
            +L  G+R FDDFL +GLIEYLDVNEEN++ IA  E D  P+ TTH+EIEPFT+LGV AGL
Sbjct: 613  QLKLGLRKFDDFLHDGLIEYLDVNEENDSFIAYQERDIDPEKTTHLEIEPFTLLGVCAGL 672

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            +PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y +VYPQ P++ +RTIEL  +D
Sbjct: 673  VPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTNFD 732

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            KL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++Y+N T DRI+
Sbjct: 733  KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIM 792

Query: 800  RPDR---TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP-LETRGSI 855
             P +   TG    R +           LD DG+ +PGE +      +NKE P +++   I
Sbjct: 793  GPMKDSLTGKVIARHEC----------LDTDGIVSPGERLVCKQTMVNKEMPAVKSNNPI 842

Query: 856  -MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                +GQ    Y +   TYKG   E    +RV + ++   +  +K L+R TRRPE+GDKF
Sbjct: 843  EQKESGQQPIAYSAVPITYKGT--EPSYAERVLVSTNNEEEFLVKILLRQTRRPEIGDKF 900

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGV G IV QED PF++ G+ PD++MNPHGFPSRMTVGK +ELLG KAGV  G+
Sbjct: 901  SSRHGQKGVTGLIVDQEDLPFNDYGMAPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGK 960

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
            FHYG+AFG         + + + L ++GF+Y GKD+ YSGITG PL+ YI+ GP+YYQKL
Sbjct: 961  FHYGTAFG-----GSKCQDLQDELFQNGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKL 1015

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV DKMHAR  GPR +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+SS
Sbjct: 1016 KHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISS 1075

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F+V VC VCG L Y      +  C  C++  ++S + +PYACKLL QEL SMNIVPRL
Sbjct: 1076 DAFDVDVCNVCGRLAY------SSWCHNCRSSASVSKISMPYACKLLFQELTSMNIVPRL 1129

Query: 1155 KL 1156
            KL
Sbjct: 1130 KL 1131


>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
          Length = 1135

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/1162 (53%), Positives = 820/1162 (70%), Gaps = 41/1162 (3%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            MG   VE +  D    D +  + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N  I
Sbjct: 6    MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPIL 118
            +KIV+AN+ + SG DP  +L++ DVR+G+P +  DG  +++   PH CRL D TY+API 
Sbjct: 64   KKIVKANELVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPIT 122

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+IEY +G+      +++N+++IGR+P+MLRS  C L GK E EL++L ECPLDPGGYF+
Sbjct: 123  VDIEYTRGTQR----IKRNNLLIGRMPLMLRS-NCALTGKSEFELSKLNECPLDPGGYFV 177

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
            ++G EKV+LIQEQLS N+++ + D  G +   VTSST   KS+T++  + GK YL  N  
Sbjct: 178  VRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSM 236

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
               IPI+V+ KA+G+ SDQE+  ++G D +       S+ +  NL ++TQ++ALEY+  K
Sbjct: 237  TDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 296

Query: 299  --VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
              VKR    +     E  A  +L    LA+VPV N N + K  YV++M+RR++ A L+K 
Sbjct: 297  LVVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 355

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
              DD+DY GNKRLEL+G L+S++FEDLFK M  E++   D  + K  ++++FD+ + +  
Sbjct: 356  LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRA 414

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GLE  +S+GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGP
Sbjct: 415  AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 474

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R+LQPSQWGMLCP  TPEGEACGLVKNLALMTH+TT+ EE P++ + +  GVED+  +SG
Sbjct: 475  RSLQPSQWGMLCPSYTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSG 534

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              ++NPN FLV  NG +LG     K     +R +RR G++G +VSV  +  QRC+YI +D
Sbjct: 535  NPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTD 594

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
            GGR+CRP VI +     +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA  E 
Sbjct: 595  GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED 654

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                 TTH+EIE FT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +N   R+DSL
Sbjct: 655  QIEDRTTHLEIETFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNHNNRIDSL 714

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            +Y LVYP  P++ ++TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GR
Sbjct: 715  MYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGR 774

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C+V K      ++YAN T DRI+ P +    A   +V+   +    +LD DG+ APGE +
Sbjct: 775  CLVYKNSKCTVKRYANQTFDRIMGPMK---DALTNKVIFKHD----VLDTDGIVAPGEQV 827

Query: 837  KPNDVYINKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNG 894
            +   + INKE P  T    M+P  GQ+    Y +   +YKGP  E   ++RV + ++   
Sbjct: 828  QNKQIMINKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEE 882

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
            D  IK L+R TR P  GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSR
Sbjct: 883  DFLIKILLRQTRIPR-GDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSR 941

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGK +ELLGGKAG+  G+FHYG+AFG        VE I   L +HGF+Y GKD  YSG
Sbjct: 942  MTVGKTLELLGGKAGLLEGKFHYGTAFG-----GSKVEDIQAELERHGFNYVGKDFFYSG 996

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            ITG PL+AYI+ GP+YYQKLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMER
Sbjct: 997  ITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMER 1056

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCLI+YGASMLI ERLM+SSD FEV VCR CG + Y         C  C++  N+S + +
Sbjct: 1057 DCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAY------CSWCHFCQSSANVSKISM 1110

Query: 1135 PYACKLLIQELQSMNIVPRLKL 1156
            PYACKLL QEL SMN+VP++ L
Sbjct: 1111 PYACKLLFQELTSMNVVPKMIL 1132


>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1233

 Score = 1234 bits (3194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1153 (52%), Positives = 806/1153 (69%), Gaps = 42/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S +D + 
Sbjct: 98   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTF 157

Query: 79   FLRFKDVRIGQPSMT-------VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F ++ +G P           D     ++P  CRL D TYAAPI V+ EYV+G    +
Sbjct: 158  YIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRG----R 213

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 214  QRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 273

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 274  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 333

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            MG+ +D+E++ +V G D  Y      + EE   L IYTQ++AL+++  ++K +   SP  
Sbjct: 334  MGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARIKINRKQSPSY 393

Query: 310  DRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
             R     A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNK
Sbjct: 394  RRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNK 453

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L+K +R+  FD    I   S  IT G+ R
Sbjct: 454  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNR 513

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 514  AISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 573

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ + G+EL+ P  +
Sbjct: 574  MLCPADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIQTVGGKELYGPGCY 633

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             +  NG      RRPK F D  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL+
Sbjct: 634  TISINGTPTALTRRPKYFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLI 693

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            + + G SR+   H+++L +G   FDDFL +GL+EYLDVNEEN++LI++YE D T  TTH+
Sbjct: 694  VVENGKSRVNAQHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITETTTHL 753

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+
Sbjct: 754  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQK 813

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ +RTIEL  YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY  
Sbjct: 814  PMVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 873

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR+     +GP  E    +    L    L+ DGLAA GE +   +VYINK
Sbjct: 874  NLKSYSNGTKDRL-----SGPTYENDAPIRKHAL----LESDGLAAVGEQVNAGEVYINK 924

Query: 846  ESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             +P ++  S    S  G+  S Y     TYK PD     +D+V +   +N +  +K L R
Sbjct: 925  STPDQSMSSGFPNSDAGRPVS-YMPTPMTYKLPD--PAYIDKVMVSVTENENQLVKVLTR 981

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPE+GDKFSSRHGQKGV G I  Q D PF++ GI PD+IMNPHGFPSRMTVGKM+EL
Sbjct: 982  QTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLEL 1041

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G+  YG+ FG        V+ +S+ L+ +GFSY GKD + SGITG  L  Y
Sbjct: 1042 VAGKAGVLAGQHGYGTCFG-----GSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFY 1096

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S
Sbjct: 1097 VFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1156

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQ
Sbjct: 1157 QLLLERLMISSDRHEIDVCEQCGFMGYLNW------CQRCKSSRSVVKMAIPYAAKLLIQ 1210

Query: 1144 ELQSMNIVPRLKL 1156
            EL SMN+  RLKL
Sbjct: 1211 ELMSMNVTARLKL 1223


>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
          Length = 1225

 Score = 1234 bits (3194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1153 (52%), Positives = 806/1153 (69%), Gaps = 42/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S +D + 
Sbjct: 90   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTF 149

Query: 79   FLRFKDVRIGQPSMT-------VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F ++ +G P           D     ++P  CRL D TYAAPI V+ EYV+G    +
Sbjct: 150  YIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRG----R 205

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 206  QRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 265

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 266  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 325

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            MG+ +D+E++ +V G D  Y      + EE   L IYTQ++AL+++  ++K +   SP  
Sbjct: 326  MGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARIKINRKQSPSY 385

Query: 310  DRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
             R     A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNK
Sbjct: 386  RRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNK 445

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L+K +R+  FD    I   S  IT G+ R
Sbjct: 446  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNR 505

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 506  AISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 565

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ + G+EL+ P  +
Sbjct: 566  MLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGAEDIQTVGGKELYGPGCY 625

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             +  NG      RRPK F D  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL+
Sbjct: 626  TISINGTPTALTRRPKYFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLI 685

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            + + G SR+   H+++L +G   FDDFL +GL+EYLDVNEEN++LI++YE D T  TTH+
Sbjct: 686  VVENGKSRVNAQHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITETTTHL 745

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+
Sbjct: 746  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQK 805

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ +RTIEL  YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY  
Sbjct: 806  PMVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 865

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR+     +GP  E    +    L    L+ DGLAA GE +   +VYINK
Sbjct: 866  NLKSYSNGTKDRL-----SGPTYENDAPIRKHAL----LESDGLAAVGEQVNAGEVYINK 916

Query: 846  ESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             +P ++  S    S  G+  S Y     TYK PD     +D+V +   +N +  +K L R
Sbjct: 917  STPDQSMSSGFPNSDAGRPVS-YMPTPMTYKLPD--PAYIDKVMVSVTENENQLVKVLTR 973

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPE+GDKFSSRHGQKGV G I  Q D PF++ GI PD+IMNPHGFPSRMTVGKM+EL
Sbjct: 974  QTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLEL 1033

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G+  YG+ FG        V+ +S+ L+ +GFSY GKD + SGITG  L  Y
Sbjct: 1034 VAGKAGVLAGQHGYGTCFG-----GSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFY 1088

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S
Sbjct: 1089 VFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1148

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQ
Sbjct: 1149 QLLLERLMISSDRHEIDVCEQCGFMGYLN------WCQRCKSSRSVVKMAIPYAAKLLIQ 1202

Query: 1144 ELQSMNIVPRLKL 1156
            EL SMN+  RLKL
Sbjct: 1203 ELMSMNVTARLKL 1215


>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
 gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
          Length = 1200

 Score = 1234 bits (3194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1150 (53%), Positives = 803/1150 (69%), Gaps = 38/1150 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYF+   ++KIV ++  I S ID + 
Sbjct: 67   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDIDHTF 126

Query: 79   FLRFKDVRIGQP-------SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P        +T D     ++PH CRL D TYAAPILVN EY++G    +
Sbjct: 127  YIKFTDIYVGSPCRADEPQDVTPDATPSDVSPHECRLRDTTYAAPILVNFEYIRG----R 182

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+PIMLRS +CVL  K  +E+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 183  QRVTRKGVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 242

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI+++++A
Sbjct: 243  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDKLYVKHNVLSEDIPIVILLRA 302

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPP 308
            MG+ ++QE++ +V G D  Y      + EE   L IYTQ++AL+++  ++K      S  
Sbjct: 303  MGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARIKINRKQSSYR 362

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
                  A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNKR
Sbjct: 363  RTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKR 422

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERT 426
            LEL+GQL++LLFEDLFK    +++  +D +L+K +R+ +FD    +   S  IT G+ R 
Sbjct: 423  LELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVMSMHSNHITQGMNRA 482

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GM
Sbjct: 483  ISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGM 542

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED+  L G++L+ P S+ 
Sbjct: 543  LCPADTPEGEACGLVKNLALMTHITTNDEEGPIKNLVFMLGAEDIMALGGKQLYTPGSYT 602

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  Q  V+IA+D GR+CRPL++
Sbjct: 603  ISINGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIV 662

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G S +   H+ +L DG   FDDFL +GL+EYLDVNEEN++LIALYE D T  TTH+E
Sbjct: 663  VENGRSLVTARHLDKLRDGTMQFDDFLAQGLVEYLDVNEENDSLIALYEKDITDTTTHLE 722

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P
Sbjct: 723  IEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKP 782

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ +RTIELV YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY   
Sbjct: 783  MVKSRTIELVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN 842

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             + Y+N T DR L P     GA    +  H+     +L+ DGLAA GE +   +VYINK 
Sbjct: 843  LKSYSNGTKDR-LNPPTYENGAP---IRKHA-----LLEADGLAAVGEQVNAGEVYINKS 893

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P ++  S +        +Y     TYK  D     +D+V     +N +  +K L+R TR
Sbjct: 894  TPEQSNLSGIGSDAGRPVQYTPTPMTYKLHD--PAYIDKVMYSVQENENQLVKVLVRQTR 951

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPE+GDKFSSRHGQKGV G I  Q D PF++ GI PD+IMNPHGFPSRMTVGKM+EL+ G
Sbjct: 952  RPEVGDKFSSRHGQKGVVGIIADQADMPFTDAGINPDIIMNPHGFPSRMTVGKMLELVAG 1011

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G   YG+ FG        VE  S  L+ HGFSY GKD + SGITG  L  Y+F 
Sbjct: 1012 KAGVLAGHHGYGTCFG-----GTPVEEASRILIDHGFSYGGKDYLTSGITGEALPFYVFT 1066

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S L+
Sbjct: 1067 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1126

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQEL 
Sbjct: 1127 LERLMISSDRHEIDVCEQCGFMGYLNW------CQRCKSSRSVVKMTIPYAAKLLIQELM 1180

Query: 1147 SMNIVPRLKL 1156
            SMN+  RLKL
Sbjct: 1181 SMNVTARLKL 1190


>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
          Length = 1201

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1153 (52%), Positives = 806/1153 (69%), Gaps = 42/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S +D + 
Sbjct: 66   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTF 125

Query: 79   FLRFKDVRIGQPSMT-------VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F ++ +G P           D     ++P  CRL D TYAAPI V+ EYV+G    +
Sbjct: 126  YIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRG----R 181

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 182  QRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 241

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 242  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 301

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            MG+ +D+E++ +V G D  Y      + EE   L IYTQ++AL+++  ++K +   SP  
Sbjct: 302  MGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARIKINRKQSPSY 361

Query: 310  DRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
             R     A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNK
Sbjct: 362  RRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNK 421

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L+K +R+  FD    I   S  IT G+ R
Sbjct: 422  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNR 481

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 482  AISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 541

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ + G+EL+ P  +
Sbjct: 542  MLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGAEDIQTVGGKELYGPGCY 601

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             +  NG      RRPK F D  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL+
Sbjct: 602  TISINGTPTALTRRPKYFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLI 661

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            + + G SR+   H+++L +G   FDDFL +GL+EYLDVNEEN++LI++YE D T  TTH+
Sbjct: 662  VVENGKSRVNAQHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITETTTHL 721

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+
Sbjct: 722  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQK 781

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ +RTIEL  YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY  
Sbjct: 782  PMVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 841

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR+     +GP  E    +    L    L+ DGLAA GE +   +VYINK
Sbjct: 842  NLKSYSNGTKDRL-----SGPTYENDAPIRKHAL----LESDGLAAVGEQVNAGEVYINK 892

Query: 846  ESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             +P ++  S    S  G+  S Y     TYK PD     +D+V +   +N +  +K L R
Sbjct: 893  STPDQSMSSGFPNSDAGRPVS-YMPTPMTYKLPD--PAYIDKVMVSVTENENQLVKVLTR 949

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPE+GDKFSSRHGQKGV G I  Q D PF++ GI PD+IMNPHGFPSRMTVGKM+EL
Sbjct: 950  QTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLEL 1009

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G+  YG+ FG        V+ +S+ L+ +GFSY GKD + SGITG  L  Y
Sbjct: 1010 VAGKAGVLAGQHGYGTCFG-----GSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFY 1064

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S
Sbjct: 1065 VFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1124

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQ
Sbjct: 1125 QLLLERLMISSDRHEIDVCEQCGFMGYLN------WCQRCKSSRSVVKMAIPYAAKLLIQ 1178

Query: 1144 ELQSMNIVPRLKL 1156
            EL SMN+  RLKL
Sbjct: 1179 ELMSMNVTARLKL 1191


>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
            513.88]
          Length = 1226

 Score = 1233 bits (3191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1153 (52%), Positives = 806/1153 (69%), Gaps = 42/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S +D + 
Sbjct: 91   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDVDHTF 150

Query: 79   FLRFKDVRIGQPSMT-------VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F ++ +G P           D     ++P  CRL D TYAAPI V+ EYV+G    +
Sbjct: 151  YIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRG----R 206

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 207  QRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 266

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 267  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 326

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            MG+ +D+E++ +V G D  Y      + EE   L IYTQ++AL+++  ++K +   SP  
Sbjct: 327  MGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARIKINRKQSPSY 386

Query: 310  DRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
             R     A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNK
Sbjct: 387  RRTHVQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNK 446

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L+K +R+  FD    I   S  IT G+ R
Sbjct: 447  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSVITMHSNHITQGMNR 506

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 507  AISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 566

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            MLCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ + G+EL+ P  +
Sbjct: 567  MLCPADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGAEDIQTVGGKELYGPGCY 626

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             +  NG      RRPK F D  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL+
Sbjct: 627  TISINGTPTALTRRPKYFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLI 686

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            + + G SR+   H+++L +G   FDDFL +GL+EYLDVNEEN++LI++YE D T  TTH+
Sbjct: 687  VVENGKSRVNAQHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITETTTHL 746

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+
Sbjct: 747  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQK 806

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ +RTIEL  YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY  
Sbjct: 807  PMVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 866

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T DR+     +GP  E    +    L    L+ DGLAA GE +   +VYINK
Sbjct: 867  NLKSYSNGTKDRL-----SGPTYENDAPIRKHAL----LESDGLAAVGEQVNAGEVYINK 917

Query: 846  ESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             +P ++  S    S  G+  S Y     TYK PD     +D+V +   +N +  +K L R
Sbjct: 918  STPDQSMSSGFPNSDAGRPVS-YMPTPMTYKLPD--PAYIDKVMVSVTENENQLVKVLTR 974

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPE+GDKFSSRHGQKGV G I  Q D PF++ GI PD+IMNPHGFPSRMTVGKM+EL
Sbjct: 975  QTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLEL 1034

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKAGV  G+  YG+ FG        V+ +S+ L+ +GFSY GKD + SGITG  L  Y
Sbjct: 1035 VAGKAGVLAGQHGYGTCFG-----GSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFY 1089

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S
Sbjct: 1090 VFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1149

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQ
Sbjct: 1150 QLLLERLMISSDRHEIDVCEQCGFMGYLN------WCQRCKSSRSVVKMAIPYAAKLLIQ 1203

Query: 1144 ELQSMNIVPRLKL 1156
            EL SMN+  RLKL
Sbjct: 1204 ELMSMNVTARLKL 1216


>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Nasonia
            vitripennis]
          Length = 1135

 Score = 1233 bits (3190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/1141 (52%), Positives = 807/1141 (70%), Gaps = 27/1141 (2%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D +K    V  + +K++L+P FL+ +GLVKQH+DSFNYF+N  I+KIV+AN++++S  DP
Sbjct: 16   DGKKFNKVVDHIENKWKLVPAFLQGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSDADP 75

Query: 77   SIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              ++++ +V IG P +     VS    PH CRL D+ Y+API V+IEY++G       + 
Sbjct: 76   LFYVKYLNVSIGTPDIEEGFSVSRPTTPHECRLRDLNYSAPITVDIEYMRGHQP----II 131

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +N+++IGR+PIMLRS  CVL  K   ELA++ ECP DPGGYFII G EKV+LIQEQ+ +N
Sbjct: 132  RNNLLIGRMPIMLRSSNCVLSEKSNFELAKMNECPHDPGGYFIINGQEKVILIQEQMLRN 191

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+I++ D K  I AS  S+T+  K+KT +    GK YL  N F   IP++++ KAMG+  
Sbjct: 192  RIILEEDNKNCIVASCNSATQERKTKTNVIGRAGKYYLRHNIFQDDIPVVIIFKAMGIVC 251

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            DQE+VQ++G +  +   +  S+EEC  L+I  Q +AL+YL  K K+  F    +      
Sbjct: 252  DQEIVQLIGTEENFMKKIGASLEECHALNIVAQNQALKYLGNKRKQKRFTVVKSSITDEM 311

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L++VPV + NF+ K  Y+A+M+R+++ A  +   +DD+DY GNKRLEL+G L
Sbjct: 312  KDVLASNILSHVPVIDFNFKLKATYLALMVRKVMIAQTDGKLVDDRDYYGNKRLELAGSL 371

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            ++L+FEDLFK    +++   D  + K  ++++FD+ + +  DSIT GL   +S+GN+ +K
Sbjct: 372  LALMFEDLFKRFNWDLKTIADKNIPK-IKAAQFDIVKHMRHDSITNGLAVAISSGNWTIK 430

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 431  RFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 490

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            E CGLVKNLALMTH+TT+ EE P++ L + LGVE++ +L GEE++N + ++V  NG ILG
Sbjct: 491  EGCGLVKNLALMTHITTEIEEEPIMRLAFNLGVENVNILGGEEINNKDVYMVFLNGNILG 550

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
              +       V R LRR G + +FVS++   + RCV I+SDGGR+CRP +I +     +K
Sbjct: 551  IVKNYYRLVTVFRMLRRKGLVNQFVSIYPQHQHRCVQISSDGGRLCRPYIIVEHCQPLVK 610

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
              H+K L  GVRSF+DFL +G IEYLDVNEEN++ IA  E       TH+EIEPFT+LGV
Sbjct: 611  AEHIKLLEQGVRSFEDFLHDGTIEYLDVNEENDSFIAFSESHIKEGITHLEIEPFTLLGV 670

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             AGL+PYPHHNQSPRNTYQCAMGKQAMG IA+NQ  R+D+L+Y LVYP  P++ T+TIEL
Sbjct: 671  CAGLVPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYNLVYPHAPMVKTKTIEL 730

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + +DKL AGQNA VAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K    + +KYAN T 
Sbjct: 731  INFDKLPAGQNAIVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNAKCVLKKYANQTC 790

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DRI+ P       ++    H       I+D +G+AAPGE++    V +NK +P    G +
Sbjct: 791  DRIM-PASVDATTKKPIWQHD------IIDGEGIAAPGEMVSNKKVMVNKSTPSANTGPV 843

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
             + + Q  + Y++A   YK P      +++V + S+      IK L+R TRRPE+GDKFS
Sbjct: 844  TTGS-QAQTEYKNANLVYKNP--VPAYIEKVMISSNAEDAYLIKLLLRQTRRPEIGDKFS 900

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+F
Sbjct: 901  SRHGQKGVTGLIVEQEDMPFNDSGICPDMIMNPHGFPSRMTVGKLIELLAGKAGVLKGKF 960

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            HYG+AFG        VE + E LV  G++Y GKD+ YSGITG PLQAYI+ GP+YYQKLK
Sbjct: 961  HYGTAFG-----GSKVEDVCEELVSQGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLK 1015

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMV DKMHAR  GPR +LTRQPTEGR+++GGLR+GEMERDCLI YGASM++ ERLM+SSD
Sbjct: 1016 HMVQDKMHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASMMLIERLMLSSD 1075

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             F+V VC  CGL+ Y       G C +C++   +S++ +PYACKLL QELQSMNIVPRL 
Sbjct: 1076 AFDVDVCNKCGLMAY------TGYCHSCRSSACVSTITMPYACKLLFQELQSMNIVPRLT 1129

Query: 1156 L 1156
            L
Sbjct: 1130 L 1130


>gi|347835281|emb|CCD49853.1| similar to DNA-directed rna polymerase III subunit [Botryotinia
            fuckeliana]
          Length = 1213

 Score = 1233 bits (3189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1159 (52%), Positives = 814/1159 (70%), Gaps = 39/1159 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   D + L  P+ +  DK+ L+P FLKV+GLVKQH+DSFNYFV   I+ IV+AN R+ S
Sbjct: 71   EPFYDGKSLTDPISTAKDKWNLVPAFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTS 130

Query: 73   GIDPSIFLRFKDVRIGQPS-MTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +DP  +L + D+R+G+P  M  D      ++ P+ CRL DMTYAAPI V+I+Y++G   
Sbjct: 131  EVDPKFWLEYTDIRVGEPERMDYDDRKPQNEITPNECRLRDMTYAAPIRVDIKYMRG--- 187

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
             +T + + ++ IGR+PIML+S +C L GK++ ++A + EC LDPGGYF++ GTEKV+L+Q
Sbjct: 188  -RTIVARKNIAIGRMPIMLKSSKCRLAGKNDRQMAHMNECALDPGGYFVVNGTEKVILVQ 246

Query: 190  EQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVII+ D KKG ++ASVTSST   KSK+ + ++K ++ L  N   + +PI++V+
Sbjct: 247  EQLSKNRVIIEADPKKGIVSASVTSSTHERKSKSYVMLKKERISLQHNILTEALPIVIVL 306

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--- 304
            KAMG++SD E++ +V G D RY      + EE   L ++TQ +ALEY+  +VK  +    
Sbjct: 307  KAMGIQSDHELLLLVAGSDERYQDEFSVNFEEATKLGVHTQHQALEYIGSRVKMGSRARA 366

Query: 305  -GSPPNDRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
             G  P  R     A   L ++ + +VPV   +FRPK  Y+  M+RR++ AM+N   +DD+
Sbjct: 367  PGGGPRSRSYVNDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAMVNPTLVDDR 426

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSI 419
            DYVGNKRLEL+GQL+SLLFEDLFK   ++++  +D +L KP+R   FD    +    + I
Sbjct: 427  DYVGNKRLELAGQLLSLLFEDLFKKFNTDLKMNIDKVLKKPNRGMEFDAYNHMQSHGNYI 486

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            T+G+ R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 487  TIGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRAL 546

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
            QPSQ+GMLC  DTPEGEACGLVKNLALMTH+TT ++E P+  L + LG ED+  +SG+E+
Sbjct: 547  QPSQFGMLCTSDTPEGEACGLVKNLALMTHITTYDDEEPVKKLTFVLGAEDIVSMSGKEI 606

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
            +   ++++  NG  L   R+PK F +  RK RR G+I E++S+F+N     V+IA+D GR
Sbjct: 607  YEKGAYVIFVNGTPLALTRQPKKFLNSFRKFRRMGRISEYISIFINHHSTSVHIATDEGR 666

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            +CRPL+I +    ++ + H++EL  G   FDDFL +GL+EY+D NEEN++ IA+ E    
Sbjct: 667  ICRPLIIVENQKPKVTKRHLEELRKGTMDFDDFLYKGLLEYVDCNEENDSNIAIRENYIN 726

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
              TTH+EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL
Sbjct: 727  EATTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYL 786

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            +VYPQ+P++ TRTIEL+ YDKL AGQNATVAVMS+SGYDIEDA+V+NK+S DRGFGRC V
Sbjct: 787  MVYPQQPMVKTRTIELIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQV 846

Query: 780  VKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
             +KY+   +KY N + DRI   DR   G     +  H      IL  DG+A  GE I   
Sbjct: 847  FRKYSTQLKKYPNRSQDRI--ADRV-IGENGKPIAKHR-----ILGTDGIALVGERINAG 898

Query: 840  DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIK 899
            +VY+NKESP     + M      +   + A   YK  D     +D+V L   +N    +K
Sbjct: 899  EVYLNKESPSNPNSTGMGNDFNLND-MKPAPMGYKLHD--HAYIDKVMLSQTENESGVLK 955

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
               R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+ PD+IMNPHGFPSRMTVGK
Sbjct: 956  VQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGK 1015

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            M+ELL GKAGV  G   YG+ FG        V+ + + L+ +GFSY+GKD + SGITG  
Sbjct: 1016 MLELLSGKAGVINGSLEYGTCFG-----GSNVDVMGQILIDNGFSYSGKDFVTSGITGES 1070

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            L AY+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIA
Sbjct: 1071 LPAYVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1130

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACK 1139
            YGAS L+ ERLM+SSD  +V +C  CGL+GY      +G C TCK+   +S+M +PYA K
Sbjct: 1131 YGASQLLLERLMLSSDAHQVDICETCGLMGY------SGWCQTCKSSKGVSTMTMPYAAK 1184

Query: 1140 LLIQELQSMNIVPRLKLAE 1158
            LL+QE+ SMN++ RLKL +
Sbjct: 1185 LLVQEMLSMNVLVRLKLED 1203


>gi|361131372|gb|EHL03070.1| putative DNA-directed RNA polymerase III subunit RPC2 [Glarea
            lozoyensis 74030]
          Length = 1184

 Score = 1230 bits (3183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1157 (52%), Positives = 815/1157 (70%), Gaps = 44/1157 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ L+P FLKV+GLVKQH+DSFN+F+ T I++IV+AN RI S  DP+ 
Sbjct: 49   KSLTDPIDTAKDKWNLVPAFLKVKGLVKQHIDSFNFFIETEIKEIVKANKRITSDADPNF 108

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN---PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            FL ++D+ +G P     G  + LN   P+ CRL DMTYAAPI V   Y +G    K    
Sbjct: 109  FLEYEDITVGIPERLDYGDRKALNEITPNECRLRDMTYAAPIRVTFRYTKG----KQMTR 164

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            ++ + IGR+PIML+S  C L GK++ ++A++ EC LDPGGYFI+ GTEKV+L+QEQLSKN
Sbjct: 165  RSHIPIGRMPIMLKSATCRLAGKNDRQMAQMNECALDPGGYFIVNGTEKVILVQEQLSKN 224

Query: 196  RVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            RVI++ D KKG  +ASVTSST   KSK+ + M+K +++L  N   + +PI++V+KAMG++
Sbjct: 225  RVIVEADPKKGITSASVTSSTHERKSKSYVTMKKDRIWLQHNILTEPVPIVIVLKAMGIQ 284

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF----GSPPN 309
            SD E++ +V G D  Y        EE A   +++Q++ALEYL  +VK  +     G+PP 
Sbjct: 285  SDHEMMFLVAGEDEDYQDEFAVMFEEAAKAGVFSQQQALEYLGARVKMGSKPRVGGAPPR 344

Query: 310  DREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
                + A   L ++ + +VPV   +FRPK  Y+  M+RR++ A+ +   +DD+DYVGNKR
Sbjct: 345  RNHIQDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAVKDPKLVDDRDYVGNKR 404

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERT 426
            LEL+GQL+SLLFEDLFK   ++++  +D +LSK +R+S FD    +    + IT+G+ R 
Sbjct: 405  LELAGQLLSLLFEDLFKKFNTDLKMNIDKVLSKKNRTSEFDAFNHMQSHGNYITLGMNRA 464

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ VKRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GM
Sbjct: 465  ISTGNWSVKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGM 524

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGEACGLVKNLALMTH+TT ++E P+  L + LG ED+  +SG+E+H   +++
Sbjct: 525  LCPSDTPEGEACGLVKNLALMTHITTYDDEEPIKKLVFFLGAEDILSVSGQEIHGKGAYV 584

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  L    +PK F    R  RR G++  FVS+++N   + V+IA+D GR+CRPL++
Sbjct: 585  IFVNGTPLALTVQPKTFLTSFRNFRRQGRVSAFVSIYINHHTKAVHIATDEGRICRPLIV 644

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA--TPDTTH 664
             +    ++ +  ++ L  G   FDDFL  G++EY+DVNEEN+ LIAL E DA  T   TH
Sbjct: 645  VENNKPKVTKKSLEALRSGKMDFDDFLYRGMVEYVDVNEENDTLIALTEHDALTTAGITH 704

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ
Sbjct: 705  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQ 764

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ +RTIEL+ YDKL AGQNATVAVMS+SGYDIEDA+V+NK+S DRGFGRC V +KY 
Sbjct: 765  QPMVKSRTIELIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYA 824

Query: 785  AINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
               +KY N T DRI   + D   P     +   H+     IL  DG+A  GE +   + Y
Sbjct: 825  TQFRKYPNRTQDRIGDKQMDERDPSKPSKK---HA-----ILGSDGMALVGEQVNSGETY 876

Query: 843  INKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            +NKE P+ T G+ I S  G  +  ++ A  TY+ PD     +D++ +   +N  + IK  
Sbjct: 877  LNKEVPINTGGNGIGSDVGTNE--HKPAPMTYRLPD--PSYIDKIMISQTENETMVIKVQ 932

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+ PD+IMNPHGFPSRMTVGKM+
Sbjct: 933  TRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKML 992

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            ELL GKAGV  G   YG+AFG        V+ + + L+K+GFSY+GKD + SGITG  L 
Sbjct: 993  ELLSGKAGVLNGSLEYGTAFG-----GSNVDDMGDILIKNGFSYSGKDFVTSGITGESLP 1047

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AYIF GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1048 AYIFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1107

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            AS L+ ERLM+SSD  EV +C VCG++G+       G C TCK+   ++ M +PYA KLL
Sbjct: 1108 ASQLLLERLMLSSDAHEVDICEVCGMMGF------QGWCQTCKSTAGVTRMTMPYAAKLL 1161

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN++ RL+L +
Sbjct: 1162 VQELLSMNVLVRLRLED 1178


>gi|67516079|ref|XP_657925.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
 gi|40746571|gb|EAA65727.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
          Length = 1656

 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1156 (53%), Positives = 814/1156 (70%), Gaps = 45/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV +++ I S +D + 
Sbjct: 522  KSLTDPISTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNF 581

Query: 79   FLRFKDVRIGQP-------SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P        +  +     + PH CRL D TYAAPI V+ EY++G    +
Sbjct: 582  YIKFTDIYLGFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYIRG----R 637

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+P+MLRS +CVL  K  A++  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 638  QRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQ 697

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N   + IPI++++KA
Sbjct: 698  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRLYVKHNVLSEDIPIVILLKA 757

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSP 307
            MG+ +D+E++ +V G D  Y      + EE   + ++TQ++AL+++  ++K  R    S 
Sbjct: 758  MGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGSRIKINRKQM-SY 816

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
                   A   +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GNK
Sbjct: 817  RRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNK 876

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLER 425
            RLEL+GQL++LLFEDLFK    +++  +D +L+K +R   FD    I   S  IT G+ R
Sbjct: 877  RLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNR 936

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+G
Sbjct: 937  AISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFG 996

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            M+C  DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ + G+E++ P S+
Sbjct: 997  MICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQTVGGKEIYAPGSY 1056

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL+
Sbjct: 1057 TISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLI 1116

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            I + G SR+K+HH+++L DG   FDDFL +GL+EY+DVNEEN++LIA+YE D T  TTH+
Sbjct: 1117 IVEDGKSRVKKHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIAIYEKDITDTTTHM 1176

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+
Sbjct: 1177 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQK 1236

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ +RTIEL  YD+L AGQNATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY  
Sbjct: 1237 PMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 1296

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              + Y+N T D IL P    P  E    +    L    L+ DGLAA GE +   +VYINK
Sbjct: 1297 NMKSYSNGTKD-ILSP----PTYENDAPIRKHAL----LESDGLAAVGEQVNAGEVYINK 1347

Query: 846  ESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             +P ++  S M  S  G+  S Y     TYK PD     +D+V + + +N +  IK L R
Sbjct: 1348 STPDQSMSSGMPGSDAGRPIS-YNPTPMTYKLPD--PAYIDKVMISATENENQIIKVLTR 1404

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TRRPE+GDKFSSRHGQKGV G IV Q D PF+++GI PD+IMNPHGFPSRMTVGKM+EL
Sbjct: 1405 QTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLEL 1464

Query: 964  LGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            + GKAGV  G+  YG+ F G P      VE +++TL+  GFSY GKD + SGITG  L  
Sbjct: 1465 VAGKAGVLSGQHGYGTCFSGTP------VEQMTQTLIDKGFSYGGKDYLTSGITGEALPF 1518

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG 
Sbjct: 1519 YVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGT 1578

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERLM+SSD  EV VC  CG +GY N       C  CK+  ++  M +PYA KLLI
Sbjct: 1579 SQLLLERLMISSDRHEVDVCEQCGFMGYLNW------CQRCKSSRSVVKMVIPYAAKLLI 1632

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL SMN+  RLKL +
Sbjct: 1633 QELMSMNVTARLKLED 1648


>gi|241614087|ref|XP_002407492.1| RNA polymerase III, putative [Ixodes scapularis]
 gi|215502825|gb|EEC12319.1| RNA polymerase III, putative [Ixodes scapularis]
          Length = 1141

 Score = 1230 bits (3182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1147 (54%), Positives = 821/1147 (71%), Gaps = 36/1147 (3%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D   L  PVK + +K++LLP FL V+GLV+ H+DSFN+F+N  I++IVRAN++I S  DP
Sbjct: 19   DTDSLQQPVKELTEKWKLLPAFLSVQGLVRHHIDSFNHFINVEIKEIVRANEKITSDADP 78

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              +L++ D+ IG+P +  + V+ K   PH CRL DMTY+API V+IEY +G+      + 
Sbjct: 79   QFYLKYLDIHIGKPDVEENCVASKATTPHECRLRDMTYSAPITVDIEYTRGTQR----VV 134

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            + D  IGR+PIMLRS  C+L  K   +++++ ECP DPGGYF++ G E+V+L+QEQLSKN
Sbjct: 135  RGDFPIGRMPIMLRSANCILADKTHFQMSQMNECPYDPGGYFVVNGVERVILMQEQLSKN 194

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+I++ D+KG +   VTSST   KS+T +  + G+ YL  N F + IPI +V K MG+ES
Sbjct: 195  RMIVEEDRKGGLMCQVTSSTHERKSRTNVGTKHGRYYLKHNCFTEDIPIAIVFKGMGLES 254

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTF--GSPPNDRE 312
            DQE+VQM+G      +   PS+EEC    ++TQ +AL YL GK+K R  F  G P     
Sbjct: 255  DQEIVQMIGSADSILSTFAPSLEECHRSQVFTQTQALRYLGGKLKHRRMFFAGGPRKTPV 314

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A  IL    LA+VPV + NFR K  Y+A+M+RR++EA  N++ +DD+DY GNKRLEL+
Sbjct: 315  DDARDILATTVLAHVPVEHYNFRVKAMYLALMIRRVIEAQTNREMIDDRDYYGNKRLELA 374

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L+SLLFEDLFK   +E++   D  + K  R+++FD+ +++ +D IT GL  ++STGN+
Sbjct: 375  GSLLSLLFEDLFKRFNTELKLVADKTIPK-VRATQFDVVKYVRQDLITNGLVSSISTGNW 433

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             VKRFKM R G+TQVL RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQ+GMLCP DT
Sbjct: 434  TVKRFKMERIGVTQVLTRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQFGMLCPSDT 493

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TTD EE P++ L   LGVED+ LL+GEEL +P+ +LV  NG 
Sbjct: 494  PEGEACGLVKNLALMTHITTDLEEAPIVRLLLNLGVEDVHLLNGEELSDPSVYLVFLNGG 553

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            I+G           +R LRR+G + EFVS+  +  QRCV I++DGGR+CRP ++ + G  
Sbjct: 554  IIGVVHNHARLLRTLRLLRRSGHLSEFVSLHSSRVQRCVNISADGGRMCRPYIVVEGGRP 613

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             +   H+++L  G+  F+DF+R GL+E+LDVNEEN++ IAL E D  P+TTH+EIEPFT+
Sbjct: 614  LVTAAHLEDLTRGLLFFNDFVRRGLVEFLDVNEENDSYIALRECDIGPETTHLEIEPFTL 673

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG IA NQ  R+DSLLYLLVYP RP++ T+T
Sbjct: 674  LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIALNQRNRIDSLLYLLVYPHRPMVKTKT 733

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+ ++ + AGQNATVAVMSYSGYDIEDAIVMN+SS+DRGFGRC V +      ++YAN
Sbjct: 734  IELIHFEDIPAGQNATVAVMSYSGYDIEDAIVMNRSSIDRGFGRCQVCRHQKCTLKRYAN 793

Query: 793  STSDRILRP--DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
             + DR++ P  D T        +  H       LD DG+A PG+ I+   V +NK  P  
Sbjct: 794  QSHDRVMGPLVDST----TMKPIWKHEP-----LDTDGIARPGDRIENRQVLVNKWVP-- 842

Query: 851  TRGSIMSPTGQ-TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            +  S+ +  GQ +   ++     YKG   E   V++V + S+      IK L+R TRRPE
Sbjct: 843  SASSVGAQPGQPSPPEHKEVPVAYKGL--EPVHVEKVLISSNTEEAFLIKLLLRQTRRPE 900

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGV G I QQED PFS++G+CPDLIMNPHGFPSRMTVGK+IELL GKAG
Sbjct: 901  IGDKFSSRHGQKGVVGLIAQQEDMPFSDQGVCPDLIMNPHGFPSRMTVGKLIELLAGKAG 960

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            V  G+FHYG+AFG        V+ + E L++ GF+Y GKD + SGITG PL AYI+ GPI
Sbjct: 961  VLNGKFHYGTAFG-----GSKVQDVGEELIRRGFNYRGKDCLTSGITGEPLSAYIYFGPI 1015

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMV+DK+HAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI +GAS+L+ ER
Sbjct: 1016 YYQKLKHMVMDKVHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGHGASLLLLER 1075

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD  +V VCR CGLLGY      +  C  C++   ++S+++PYACKLL QEL SMN
Sbjct: 1076 LMLSSDACQVDVCRGCGLLGY------SRWCHFCRSSRTMASLRVPYACKLLFQELLSMN 1129

Query: 1150 IVPRLKL 1156
            I+PRL L
Sbjct: 1130 IIPRLDL 1136


>gi|259489446|tpe|CBF89725.1| TPA: DNA-directed RNA polymerase III, beta subunit, putative
            (AFU_orthologue; AFUA_1G02460) [Aspergillus nidulans FGSC
            A4]
          Length = 1225

 Score = 1229 bits (3181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1155 (53%), Positives = 813/1155 (70%), Gaps = 43/1155 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV +++ I S +D + 
Sbjct: 91   KSLTDPISTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNF 150

Query: 79   FLRFKDVRIGQP-------SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P        +  +     + PH CRL D TYAAPI V+ EY++G    +
Sbjct: 151  YIKFTDIYLGFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYIRG----R 206

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+P+MLRS +CVL  K  A++  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 207  QRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQ 266

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N   + IPI++++KA
Sbjct: 267  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRLYVKHNVLSEDIPIVILLKA 326

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPP 308
            MG+ +D+E++ +V G D  Y      + EE   + ++TQ++AL+++  ++K      S  
Sbjct: 327  MGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGSRIKINRKQMSYR 386

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
                  A   +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GNKR
Sbjct: 387  RTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKR 446

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERT 426
            LEL+GQL++LLFEDLFK    +++  +D +L+K +R   FD    I   S  IT G+ R 
Sbjct: 447  LELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRA 506

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GM
Sbjct: 507  ISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGM 566

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            +C  DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ + G+E++ P S+ 
Sbjct: 567  ICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQTVGGKEIYAPGSYT 626

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL+I
Sbjct: 627  ISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLII 686

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G SR+K+HH+++L DG   FDDFL +GL+EY+DVNEEN++LIA+YE D T  TTH+E
Sbjct: 687  VEDGKSRVKKHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIAIYEKDITDTTTHME 746

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P
Sbjct: 747  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKP 806

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ +RTIEL  YD+L AGQNATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY   
Sbjct: 807  MVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN 866

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             + Y+N T D IL P    P  E    +    L    L+ DGLAA GE +   +VYINK 
Sbjct: 867  MKSYSNGTKD-ILSP----PTYENDAPIRKHAL----LESDGLAAVGEQVNAGEVYINKS 917

Query: 847  SPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            +P ++  S M  S  G+  S Y     TYK PD     +D+V + + +N +  IK L R 
Sbjct: 918  TPDQSMSSGMPGSDAGRPIS-YNPTPMTYKLPD--PAYIDKVMISATENENQIIKVLTRQ 974

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGV G IV Q D PF+++GI PD+IMNPHGFPSRMTVGKM+EL+
Sbjct: 975  TRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELV 1034

Query: 965  GGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
             GKAGV  G+  YG+ F G P      VE +++TL+  GFSY GKD + SGITG  L  Y
Sbjct: 1035 AGKAGVLSGQHGYGTCFSGTP------VEQMTQTLIDKGFSYGGKDYLTSGITGEALPFY 1088

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F GPIYYQKLKHMV DKMH+R  GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S
Sbjct: 1089 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1148

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERLM+SSD  EV VC  CG +GY N       C  CK+  ++  M +PYA KLLIQ
Sbjct: 1149 QLLLERLMISSDRHEVDVCEQCGFMGYLNW------CQRCKSSRSVVKMVIPYAAKLLIQ 1202

Query: 1144 ELQSMNIVPRLKLAE 1158
            EL SMN+  RLKL +
Sbjct: 1203 ELMSMNVTARLKLED 1217


>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
 gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1212

 Score = 1225 bits (3169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1153 (53%), Positives = 800/1153 (69%), Gaps = 40/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYF+   ++KIV A+  I S  D + 
Sbjct: 79   KSLTDPINTARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIYSDADSAF 138

Query: 79   FLRFKDVRIGQPSMT---VDGVSE--KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            FL+F D+ +G P  +    D V     + P+ CRL DMTYAAPI V+  Y +G    K  
Sbjct: 139  FLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTYKRG----KDK 194

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            + +  V IGR+PIMLRS +CVL  K   E+  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 195  VTQRRVPIGRMPIMLRSSKCVLSNKKPNEMHLLNECPLDPGGYFIVNGTEKVILVQEQLS 254

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNR+I++TD KK  + ASVTSS+   KSK+ I ++K ++YL  N   + +P+++V+KAMG
Sbjct: 255  KNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRLYLKHNVLSEDVPLVIVLKAMG 314

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPN 309
            + SD+E++ +V G D  Y      + EE    +++TQ++AL+++  K+K  R   G    
Sbjct: 315  VHSDKEMMLLVAGVDDVYQEDFAINFEEAIKQNVFTQQQALDWIGSKIKINRGKIGGYKK 374

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
                 A   +  V +++V V + +FRPK  YVA M RR++ A  + D +DD+DYVGNKRL
Sbjct: 375  THIEEAIEAISSVIISHVEVTDMDFRPKAIYVANMARRVLMAKHDSDMVDDRDYVGNKRL 434

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTL 427
            EL+GQL++LLFEDLFK    +++  +  +L K  R   FD    +    + IT G+ R +
Sbjct: 435  ELAGQLLALLFEDLFKKFQFDIKMNITKVLGK-RRREIFDAMSVVTLHGNHITHGMNRAI 493

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GML
Sbjct: 494  STGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGML 553

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP DTPEGEACGLVKNLALMTH+TT++EEGP+  L + LG ED+  LSG+E++   ++++
Sbjct: 554  CPSDTPEGEACGLVKNLALMTHITTNDEEGPVSKLVFMLGAEDITTLSGKEIYGLGAYII 613

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG  +   RRPK F +  R+LRR G+I EFVS+++N  QR V+IA+D GR+CRPL++ 
Sbjct: 614  SMNGTPIALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHIATDDGRICRPLIVV 673

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            + G   +K  H+++L DG   FDDFL +GL+EYLDVNEEN++ IA+YE D    TTH+EI
Sbjct: 674  ENGKPLVKASHLEKLRDGSMQFDDFLAQGLVEYLDVNEENDSNIAIYEKDVIDITTHLEI 733

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLYL+VYPQ+P+
Sbjct: 734  EPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPM 793

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            + TRTIEL+ YD+L AGQNATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY A  
Sbjct: 794  VKTRTIELIKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANL 853

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            + Y N + DR+  P+    GA    +  H+     +LD DGLAA G ++    VYINKE 
Sbjct: 854  KSYPNGSEDRLRGPELDEEGAP---ITKHA-----LLDTDGLAAVGAVVSQGQVYINKEV 905

Query: 848  PLE--TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
            P    + G   S  G+    Y  A  TYK PD     +D+V +   +      K   R T
Sbjct: 906  PAAAFSAGITGSDVGRPPD-YNPAPMTYKLPD--PSYIDKVMVSVTEGESKIYKVQTRQT 962

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPE+GDKFSSRHGQKGV G I +Q D PF+++GI PD+IMNPHGFPSRMTVGK++EL+ 
Sbjct: 963  RRPEVGDKFSSRHGQKGVVGIIAEQADMPFNDQGIVPDIIMNPHGFPSRMTVGKLLELVA 1022

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GKAGV  G+  YG+AFG        VE +S  LV  GFSY GKD + SGITG PL  Y+F
Sbjct: 1023 GKAGVLSGQHGYGTAFG-----GSPVEQMSAILVDKGFSYGGKDYLTSGITGEPLPFYVF 1077

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            MGPIYYQKLKHMV DKMH+R +GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S L
Sbjct: 1078 MGPIYYQKLKHMVQDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1137

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERLM+SSD  EV +C  CG +GY N       C  C++   +  M +PYA KLLIQEL
Sbjct: 1138 LLERLMLSSDKHEVDICEKCGFMGYQNW------CQRCRSSRGVVKMTIPYAAKLLIQEL 1191

Query: 1146 QSMNIVPRLKLAE 1158
             SMN+  RLKL +
Sbjct: 1192 LSMNVTARLKLGD 1204


>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
            RIB40]
          Length = 1218

 Score = 1225 bits (3169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1156 (52%), Positives = 807/1156 (69%), Gaps = 44/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S ID + 
Sbjct: 83   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHNF 142

Query: 79   FLRFKDVRIGQPSMTVDG-------VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P    +            ++PH CRL D TYAAPI V+ EY++G    +
Sbjct: 143  YIKFTDIYLGAPRRADEQQDVGPGFTGSTVSPHECRLRDTTYAAPIQVDFEYIRG----R 198

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              ++K    IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 199  QRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKVILVQEQ 258

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 259  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 318

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            MG+ +D+E++ +V G D  Y      + EE   L IYTQ++AL+++  ++K +  G   N
Sbjct: 319  MGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRIKINR-GKQNN 377

Query: 310  DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
             R      A   +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GN
Sbjct: 378  YRRTHVQEAVEAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN 437

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  VD +L+K +R+  FD    +   S  IT G+ 
Sbjct: 438  KRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMN 497

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 498  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 557

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLC  DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED+  L G+EL+ P  
Sbjct: 558  GMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDISTLGGKELYGPGC 617

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            + +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL
Sbjct: 618  YTISINGTPMALTRRPKSFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPL 677

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            ++ + G +R++ HH+K+L +G  SFDDFL +GL+EYLDVNEEN++LIA+YE D T  TTH
Sbjct: 678  IVVENGKNRVRSHHLKKLREGTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEATTH 737

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ
Sbjct: 738  LEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQ 797

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ +RTIEL  YD+L AG NA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V KK  
Sbjct: 798  KPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSV 857

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            A  + Y+N T D ++ P+       R            +L+ DGLAA GE +   +VYIN
Sbjct: 858  ANLKSYSNGTKDILMPPEYDNDAPIRKHA---------LLESDGLAAVGEQVNAGEVYIN 908

Query: 845  KESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            K +P ++  S    S  G+   +Y     TYK  D     +D+V + + +N +  IK L 
Sbjct: 909  KSTPDQSLASGFPGSDMGRP-VKYTPTPMTYKLHD--PAYIDQVLVSTTENENQLIKVLT 965

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPE+GDKFSSRHGQKGV G I  Q D PF+++GI PD+IMNPHGFPSRMTVGKM+E
Sbjct: 966  RQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLE 1025

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+ GKAGV  G+  YG+ FG        VE +S+ L+  GFSY GKD + SGITG  L  
Sbjct: 1026 LVAGKAGVLAGQHGYGTCFG-----GSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPF 1080

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG 
Sbjct: 1081 YVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGT 1140

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLI
Sbjct: 1141 SQLLLERLMISSDRHEIDVCEQCGFMGYLN------WCQRCKSSRSVVKMAIPYAAKLLI 1194

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL SMN+  RLKL +
Sbjct: 1195 QELMSMNVTARLKLED 1210


>gi|156059482|ref|XP_001595664.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980]
 gi|154701540|gb|EDO01279.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1230

 Score = 1224 bits (3168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1176 (52%), Positives = 815/1176 (69%), Gaps = 57/1176 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   D + L  P+ +  DK+ L+P FLKV+GLVKQH+DSFNYFV   I+ IV+AN R+ S
Sbjct: 72   EPFYDGKSLTDPISTAKDKWNLVPAFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTS 131

Query: 73   GIDPSIFLRFKDVRIGQPS-MTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +DP  +L + D+R+G+P  M  D      ++ P+ CRL DMTYAAPI V+I+Y++G   
Sbjct: 132  EVDPKFWLEYTDIRVGEPERMDYDDRKPQNEITPNECRLRDMTYAAPIRVDIKYMRG--- 188

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
             +T + + ++ IGR+PIML+S +C L GK++ ++A + EC LDPGGYF++ GTEKV+L+Q
Sbjct: 189  -RTIVARKNIAIGRMPIMLKSSKCRLNGKNDRQMAHMNECALDPGGYFVVNGTEKVILVQ 247

Query: 190  EQLSKNRVIIDTD-KKGNINASVT----------------SSTETVKSKTVIQMEKGKMY 232
            EQLSKNRVII+ D KKG ++ASVT                SST   KSK+ + ++K ++ 
Sbjct: 248  EQLSKNRVIIEADPKKGIVSASVTRSDCISRTSVSLLTLNSSTHERKSKSYVMLKKERIS 307

Query: 233  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKA 291
            L  N   + +PI++V+KAMG++SD E++ +V G D RY      + EE   L ++TQ +A
Sbjct: 308  LQHNILQEALPIVIVLKAMGIQSDHELLLLVAGSDERYQDEFSVNFEEATKLGVHTQHQA 367

Query: 292  LEYLEGKVKRSTF----GSPPNDRE--GRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
            LEY+  +VK  +     G  P  R   G A   L ++ + +VPV   +FRPK  Y+  M+
Sbjct: 368  LEYIGARVKMGSRARAPGGGPQRRNYIGDALEALANIIITHVPVVGLDFRPKALYICFMV 427

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
            RR++ AM+N   +DD+DYVGNKRLEL+GQL+SLLFEDLFK   ++++  +D +L KP+R 
Sbjct: 428  RRVLMAMVNPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLKMNIDKVLKKPNRG 487

Query: 406  SRFDLSQFIVR--DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
              FD    +    + IT+G+ R +STGN+ +KRFKM R G+T VL+RLS+I  LG MTR+
Sbjct: 488  MEFDAYNHMQSHGNYITIGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRI 547

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            S QFEK+RKVSGPRALQPSQ+GMLC  DTPEGEACGLVKNLALMTH+TT ++E P+  L 
Sbjct: 548  SSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTYDDEEPVKKLT 607

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
            + LG ED+  +SG+E++   ++++  NG  L   R+PK F +  RK RR G+I E++S+F
Sbjct: 608  FVLGAEDIVSMSGKEIYEKGAYVIFVNGTPLALTRQPKKFLNSFRKFRRMGRISEYISIF 667

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDV 643
            +N     V+IA+D GR+CRPL+I +    ++ + H++EL  G   FDDFL +GL+EY+D 
Sbjct: 668  INHHSTSVHIATDEGRICRPLIIVENQKPKVTKRHLEELRKGTMDFDDFLYKGLLEYVDC 727

Query: 644  NEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            NEEN++ IA+ E      TTH+EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G
Sbjct: 728  NEENDSNIAIRENYINEATTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 787

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
             IA+NQ  R+D+LLYL+VYPQ+P++ TRTIEL+ YDKL AGQNATVAVMS+SGYDIEDA+
Sbjct: 788  AIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIKYDKLPAGQNATVAVMSFSGYDIEDAL 847

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            V+NK+S DRGFGRC V +KY+   +KY N + DRI   DR   G     +  H      I
Sbjct: 848  VLNKASCDRGFGRCQVFRKYSTQLKKYPNRSQDRI--ADRQ-VGENGKPIAKHR-----I 899

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIM-SPTGQTDSRYRSARQTYKGPDGETCV 882
            L  DG+A  GE I   + Y+NKESP     S M +  G  D   + A   YK  D     
Sbjct: 900  LGVDGIAMVGERINAGETYLNKESPSNPNSSGMGNDYGSND--MKPAPMGYKLHD--YAY 955

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            +D+V L   +N    +K   R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+ P
Sbjct: 956  IDKVMLSQTENESTVLKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGVTP 1015

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+IMNPHGFPSRMTVGKM+ELL GKAGV  G   YG+ FG        V+ + + L+  G
Sbjct: 1016 DIIMNPHGFPSRMTVGKMLELLSGKAGVVNGSLEYGTCFG-----GSNVDVMGKILIDKG 1070

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            FSY+GKD + SGITG  L AY+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+
Sbjct: 1071 FSYSGKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRS 1130

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR+GEMERDCLIAYGAS L+ ERLM+SSD  EV +C  CGL+GY      +G C T
Sbjct: 1131 RDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHEVDICETCGLMGY------SGWCQT 1184

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            CK+   +S+M +PYA KLL+QE+ SMN++ RLKL +
Sbjct: 1185 CKSSKGVSTMTMPYAAKLLVQEMLSMNVLVRLKLED 1220


>gi|440799025|gb|ELR20086.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1035

 Score = 1224 bits (3166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1143 (53%), Positives = 793/1143 (69%), Gaps = 120/1143 (10%)

Query: 15   LPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI 74
            L D +KL  PV +V DK++LLP FLKVRGLVKQH+DS++YF+N  I+K++ AN  +    
Sbjct: 11   LFDSKKLTQPVGTVEDKWKLLPAFLKVRGLVKQHIDSYDYFINVEIKKVLEANALVQCDE 70

Query: 75   DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            D + FLR+K++ IG+P++  D V   + P  CRL D+TY+API V+IEY +G    K  +
Sbjct: 71   DTTWFLRYKNIYIGEPTIEEDLVPVAVTPQHCRLRDITYSAPISVDIEYTRG----KQIV 126

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             +N +VIGR+PIML+S +C+L GK+E ELA L ECPLDPGGYF++KG E+VLL+QEQLSK
Sbjct: 127  IRNGIVIGRMPIMLKSSKCILTGKNEQELAALQECPLDPGGYFVVKGVERVLLVQEQLSK 186

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NR+II+ DK G + A+V  +T  VK+        GK+YL LN   +++PI+++MKAMG+E
Sbjct: 187  NRIIIEEDKTGGVAANVVRTTLNVKN--------GKIYLKLNMLTEEVPIVILMKAMGVE 238

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SDQEVVQ+VG +P Y+ ++  S+EEC  +                           +   
Sbjct: 239  SDQEVVQLVGSEPYYADMMSSSLEECCRM---------------------------QAEE 271

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  IL  V L++VPV N +FR K  YV +M+RR++ AM +   MDDKDY GNKRLEL+G 
Sbjct: 272  ARHILASVVLSHVPVVNYDFRVKGIYVGLMIRRILLAMRDPSTMDDKDYYGNKRLELAGS 331

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            L+SLLFED FK   +E+++  D +L+K +R++ FD+ + I +D+I+  L R +STGN+++
Sbjct: 332  LLSLLFEDTFKKFNAELKRQADTVLAKQNRAAEFDILKCIRQDTISYALSRAISTGNWNL 391

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R G+TQVL+RLSFI  LG MT++S QFEK+RKVSGPR+LQPSQWGMLCP DTPE
Sbjct: 392  KRFKMERAGVTQVLSRLSFIAALGMMTKISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 451

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GE+CGLVKNLAL+TH+TTDE+E P+  +   LGVED+ LLSGEE+H+  ++LV  NG++L
Sbjct: 452  GESCGLVKNLALLTHITTDEDEAPIRRIALNLGVEDMALLSGEEMHSAGNYLVFMNGMLL 511

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G HR P  F    R LRR+GK+ EFVSVF++  QR +YIASDGGRVCRPL+I +KG  R+
Sbjct: 512  GVHRAPHTFVRNFRLLRRSGKMSEFVSVFIHYGQRSIYIASDGGRVCRPLIIVEKGRPRV 571

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
            +  H+KE+ DG R+FDDFL+EG IE+LDVNEENN  +AL E + T  TTH+EI+P TILG
Sbjct: 572  ETRHIKEVTDGFRTFDDFLKEGRIEFLDVNEENNCFLALSEKEITMSTTHLEIDPLTILG 631

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V AGLIPYPHHNQSPRNTY  +                                      
Sbjct: 632  VCAGLIPYPHHNQSPRNTYHYS-------------------------------------- 653

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
              GYD                   IEDA+V+N++S+DRGFGRCIV+KK TA  +KY N T
Sbjct: 654  --GYD-------------------IEDALVLNRASVDRGFGRCIVLKKTTATIKKYPNQT 692

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             DRI+ P    P  +R Q           LD DG+A+PGE ++P  VYINK++P+ T  +
Sbjct: 693  FDRIVGPP---PENDRGQKRFDC------LDVDGIASPGERVEPGKVYINKQTPINTTDT 743

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
            + +P    +S +R +  +YKGP      +D+V L S       IK L R TRRPELGDKF
Sbjct: 744  LANPDNIPESAFRGSPMSYKGPT--HAYIDKVLLTSSAEDHCLIKVLFRSTRRPELGDKF 801

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGV G IVQQ D PF+ +GICPD+IMNPHGFPSRMTVGKMIELL GKAGV  G 
Sbjct: 802  SSRHGQKGVTGIIVQQPDMPFNHQGICPDIIMNPHGFPSRMTVGKMIELLAGKAGVLEGC 861

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
            +H G+AF   +GH   V+ +S+ L+KHG+SY+GKD + SGITG  L AYIF GP+YYQKL
Sbjct: 862  YHEGTAF---AGHK--VDYLSKILIKHGYSYSGKDQLTSGITGETLSAYIFFGPVYYQKL 916

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV+DKMHAR  GPR +LTRQPTEGRAR GGLR+GEMERDCLI YGASML+ ERLM+SS
Sbjct: 917  KHMVMDKMHARARGPRAVLTRQPTEGRAREGGLRLGEMERDCLIGYGASMLLLERLMLSS 976

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F+V VC+ CGLLGY       G C  CK+  N+S++K+PYACKLL QELQSMNIVPRL
Sbjct: 977  DAFQVNVCKTCGLLGY------EGWCQYCKSTSNVSNVKIPYACKLLFQELQSMNIVPRL 1030

Query: 1155 KLA 1157
            +LA
Sbjct: 1031 RLA 1033


>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1180

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1156 (52%), Positives = 807/1156 (69%), Gaps = 44/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S ID + 
Sbjct: 45   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHNF 104

Query: 79   FLRFKDVRIGQPSMTVDG-------VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P    +            ++PH CRL D TYAAPI V+ EY++G    +
Sbjct: 105  YIKFTDIYLGAPRRADEQQDVGPGFTGSTVSPHECRLRDTTYAAPIQVDFEYIRG----R 160

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              ++K    IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 161  QRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKVILVQEQ 220

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 221  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 280

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            MG+ +D+E++ +V G D  Y      + EE   L IYTQ++AL+++  ++K +  G   N
Sbjct: 281  MGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRIKINR-GKQNN 339

Query: 310  DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
             R      A   +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GN
Sbjct: 340  YRRTHVQEAVEAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN 399

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  VD +L+K +R+  FD    +   S  IT G+ 
Sbjct: 400  KRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMN 459

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 460  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 519

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLC  DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED+  L G+EL+ P  
Sbjct: 520  GMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDISTLGGKELYGPGC 579

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            + +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL
Sbjct: 580  YTISINGTPMALTRRPKSFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPL 639

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            ++ + G +R++ HH+K+L +G  SFDDFL +GL+EYLDVNEEN++LIA+YE D T  TTH
Sbjct: 640  IVVENGKNRVRSHHLKKLREGTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEATTH 699

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ
Sbjct: 700  LEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQ 759

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ +RTIEL  YD+L AG NA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V KK  
Sbjct: 760  KPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSV 819

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            A  + Y+N T D ++ P+       R            +L+ DGLAA GE +   +VYIN
Sbjct: 820  ANLKSYSNGTKDILMPPEYDNDAPIRKHA---------LLESDGLAAVGEQVNAGEVYIN 870

Query: 845  KESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            K +P ++  S    S  G+   +Y     TYK  D     +D+V + + +N +  IK L 
Sbjct: 871  KSTPDQSLASGFPGSDMGRP-VKYTPTPMTYKLHD--PAYIDQVLVSTTENENQLIKVLT 927

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPE+GDKFSSRHGQKGV G I  Q D PF+++GI PD+IMNPHGFPSRMTVGKM+E
Sbjct: 928  RQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLE 987

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+ GKAGV  G+  YG+ FG        VE +S+ L+  GFSY GKD + SGITG  L  
Sbjct: 988  LVAGKAGVLAGQHGYGTCFG-----GSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPF 1042

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG 
Sbjct: 1043 YVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGT 1102

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLI
Sbjct: 1103 SQLLLERLMISSDRHEIDVCEQCGFMGYLN------WCQRCKSSRSVVKMAIPYAAKLLI 1156

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL SMN+  RLKL +
Sbjct: 1157 QELMSMNVTARLKLED 1172


>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
 gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
          Length = 1246

 Score = 1222 bits (3162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1150 (52%), Positives = 802/1150 (69%), Gaps = 38/1150 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYF+   ++KIV ++  I S ID + 
Sbjct: 113  KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDIDHNF 172

Query: 79   FLRFKDVRIGQP-------SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P         ++D     ++PH CRL D TYAAPILV+ EY++G    +
Sbjct: 173  YIKFTDIYVGSPCRADEPQDASLDAFPSSVSPHECRLRDTTYAAPILVDFEYIRG----R 228

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + +  V IGR+PIMLRS +CVL  K  +E+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 229  QRVIRRGVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 288

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI+++++A
Sbjct: 289  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDKLYVKHNVLNEDIPIVILLRA 348

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPP 308
            MG+ ++QE++ +V G D  Y      + E+   L IYTQ++AL+++  ++K      S  
Sbjct: 349  MGIHTEQEMLLLVAGVDSLYQDDFAINFEDSIKLGIYTQQQALDWIGARIKINRKQMSYR 408

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
                  A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNKR
Sbjct: 409  RTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKR 468

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERT 426
            LEL+GQL++LLFEDLFK    +++  +D +L+K +R+  FD    +    + IT G+ R 
Sbjct: 469  LELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAWSVMSMHGNHITQGMNRA 528

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GM
Sbjct: 529  ISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGM 588

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED+  L G++L+ P S+ 
Sbjct: 589  LCPADTPEGEACGLVKNLALMTHITTNDEEGPIKNLVFMLGAEDILALGGKQLYTPGSYT 648

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  Q  V+IA+D GR+CRPL++
Sbjct: 649  ISINGTPIALTRRPKFFLNAFRRLRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIV 708

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G S +   H+++L DG   FDDFL +GL+EYLDVNEEN++LIA+YE   T  TTH+E
Sbjct: 709  VENGKSLVTGEHLEKLRDGTMQFDDFLAQGLVEYLDVNEENDSLIAIYEDRITDTTTHLE 768

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P
Sbjct: 769  IEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKP 828

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ +RTIEL  YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY   
Sbjct: 829  MVKSRTIELTKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN 888

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             + Y+N T DR L P     GA    +  H+     +L+ DGLAA GE +   +VYINK 
Sbjct: 889  LKSYSNGTKDR-LNPPTYENGAP---IRKHA-----LLESDGLAAVGEQVNAGEVYINKS 939

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P ++  S +        +Y     TYK  D     +D+V     +N +  +K L+R TR
Sbjct: 940  TPDQSHMSGIGSDAGRPIQYTPTPMTYKLHD--PAYIDKVMYSVQENENQLVKVLVRQTR 997

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPE+GDKFSSRHGQKGV G I  Q D PF++ GI PD+IMNPHGFPSRMTVGKM+EL+ G
Sbjct: 998  RPEVGDKFSSRHGQKGVVGIIADQADMPFTDLGINPDIIMNPHGFPSRMTVGKMLELVAG 1057

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G   YG+ FG        VE  S TL+ HGF+Y GK+ + SGITG  L  Y+F 
Sbjct: 1058 KAGVLAGHHGYGTCFG-----GTPVEETSRTLIAHGFNYGGKEYLTSGITGEALPFYVFT 1112

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S L+
Sbjct: 1113 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1172

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQEL 
Sbjct: 1173 LERLMISSDRHEIDVCEQCGFMGYLN------WCQRCKSSRSVVKMTIPYAAKLLIQELM 1226

Query: 1147 SMNIVPRLKL 1156
            SMN+  RLKL
Sbjct: 1227 SMNVTARLKL 1236


>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1219

 Score = 1222 bits (3162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1153 (52%), Positives = 795/1153 (68%), Gaps = 39/1153 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S +D + 
Sbjct: 85   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDVDHNF 144

Query: 79   FLRFKDVRIGQPSMTVDG-------VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P    +            + P  CRL D TYAAPI V+ +YV+G    +
Sbjct: 145  YIKFTDIYLGAPRRADESQDAGPAFTGSTVTPQECRLRDTTYAAPIQVDFDYVRG----R 200

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + K    IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 201  QRVRKRGYAIGRMPVMLRSSKCVLANKSPAEMTVLNECPLDPGGYFIVNGTEKVILVQEQ 260

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 261  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLNEDIPIVILLKA 320

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPP 308
            MG+ +D+E++ +V G D  Y      + EE  NL IYTQ++AL+++  ++K      S  
Sbjct: 321  MGINTDKEMLLLVAGVDKVYQEDFAINFEEAINLGIYTQQQALDWIGARIKINRKQASYR 380

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
                  A   +  V ++++ V N NFRPK  YVA M RR++ A  +   +DD+DY+GNKR
Sbjct: 381  RTHVQEAIEAIASVIISHIEVKNMNFRPKAIYVAHMARRVLMAKNDPTLVDDRDYLGNKR 440

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLERT 426
            LEL+GQL++LLFEDLFK    +++  VD +L+K +R+  FD    +    + IT G+ R 
Sbjct: 441  LELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWSVMSMHTNHITQGMNRA 500

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GM
Sbjct: 501  ISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGM 560

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED++ L G+EL+ P  + 
Sbjct: 561  LCPADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIQTLGGKELYGPGCYT 620

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG      RRPK F +  R+LRR G+I EFVS+++N  Q  V++A+D GR+CRPL++
Sbjct: 621  ISINGTPTALTRRPKYFLNAFRRLRRMGRISEFVSIYINHHQHAVHVATDDGRICRPLIV 680

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G S ++ HH+++L +G   FDDFL +GL+EYLDVNEEN++LIA+YE D +  TTH+E
Sbjct: 681  VENGKSTVQTHHLEKLREGTMQFDDFLAQGLVEYLDVNEENDSLIAIYEKDISETTTHLE 740

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P
Sbjct: 741  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKP 800

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ +RTIEL  YD+L AGQNA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY   
Sbjct: 801  MVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTN 860

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             + Y+N T D +  P        R            +L+ DGLAA GE +   +VYINK 
Sbjct: 861  LKSYSNGTKDMLTPPSYENDAPIRKHA---------LLESDGLAAVGEQVNAGEVYINKS 911

Query: 847  SPLETRG-SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
            +P +     I  P       Y     TYK PD     +D+V L   +N +  +K L R T
Sbjct: 912  TPDQANSFGIGGPDPNRPINYMPTPMTYKLPD--PAYIDQVLLSVTENENQLVKVLTRQT 969

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPE+GDKFSSRHGQKGV G I  Q D PF+++GI PD+IMNPHGFPSRMTVGKM+EL+ 
Sbjct: 970  RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVA 1029

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GKAGV  G+  YG+ FG        VE +S+ L+  GFSY GKD + SGITG  L  Y+F
Sbjct: 1030 GKAGVLSGQHGYGTCFG-----GSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVF 1084

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
             GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S L
Sbjct: 1085 TGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQL 1144

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQEL
Sbjct: 1145 LLERLMISSDRHEIDVCEKCGFMGYLNW------CQRCKSSRSVVKMVIPYAAKLLIQEL 1198

Query: 1146 QSMNIVPRLKLAE 1158
             SMN+  RLKL +
Sbjct: 1199 MSMNVTARLKLED 1211


>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
 gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
          Length = 1218

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1156 (52%), Positives = 807/1156 (69%), Gaps = 44/1156 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NY V   ++KIV ++  I S ID + 
Sbjct: 83   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHNF 142

Query: 79   FLRFKDVRIGQPSMTVDG-------VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            +++F D+ +G P    +            ++PH CRL D TYAAPI V+ EY++G    +
Sbjct: 143  YIKFTDIYLGAPRRADEQQDVGPGFTGSTVSPHECRLRDTTYAAPIQVDFEYIRG----R 198

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              ++K    IGR+P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQ
Sbjct: 199  QRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKVILVQEQ 258

Query: 192  LSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++TD KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KA
Sbjct: 259  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 318

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            MG+ +D+E++ +V G D  Y      + EE   L IYTQ++AL+++  ++K +  G   N
Sbjct: 319  MGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRIKINR-GKQNN 377

Query: 310  DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
             R      A   +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GN
Sbjct: 378  YRRTHVQEAVEAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGN 437

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  VD +L+K +R+  FD    +   S  IT G+ 
Sbjct: 438  KRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMN 497

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 498  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 557

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLC  DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LG ED+  L G+EL+ P  
Sbjct: 558  GMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDISTLGGKELYGPGC 617

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            + +  NG  +   RRPK F +  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL
Sbjct: 618  YTISINGTPMALTRRPKSFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPL 677

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            ++ + G +R++ HH+K+L +G  SFDDFL +GL+EYLDVNEEN++LIA+YE D T  TTH
Sbjct: 678  IVVENGKNRVRSHHLKKLREGTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEATTH 737

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ
Sbjct: 738  LEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQ 797

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ +RTIEL  YD+L AG NA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V KK  
Sbjct: 798  KPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSV 857

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            A  + Y+N T D ++ P+       R            +L+ DGLAA GE +   +VYIN
Sbjct: 858  ANLKSYSNGTKDILMPPEYDNDAPIRKHA---------LLESDGLAAVGEQVNAGEVYIN 908

Query: 845  KESPLETRGSIM--SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            K +P ++  S    S  G+   +Y     TYK  D     +D+V + + +N +  IK L 
Sbjct: 909  KSTPDQSLASGFPGSDMGRP-VKYTPTPMTYKLHD--PAYIDQVLVSTTENENQLIKVLT 965

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPE+GDKFSSRHGQKGV G I  Q D PF+++GI PD+IMNPHGFPSRMTVGKM+E
Sbjct: 966  RQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLE 1025

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+ GKAGV  G+  YG+ FG        VE +S+ L+  GFSY GKD + SGITG  L  
Sbjct: 1026 LVAGKAGVLAGQHGYGTCFG-----GSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPF 1080

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG 
Sbjct: 1081 YVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGT 1140

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERLM+SSD  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLI
Sbjct: 1141 SQLLLERLMISSDRHEIDVCEQCGFMGYLN------WCQRCKSSRSVVKMAIPYAAKLLI 1194

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL SMN+  RLKL +
Sbjct: 1195 QELMSMNVTARLKLED 1210


>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1212

 Score = 1219 bits (3154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1152 (53%), Positives = 792/1152 (68%), Gaps = 38/1152 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYF+   ++KIV A+  I S  D   
Sbjct: 79   KSLTDPINTARDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVEASSTIYSDADSHF 138

Query: 79   FLRFKDVRIGQPSMT---VDGVSE--KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            FL+F D+ +G P  +    D V     + P+ CRL DMTYAAPI V+  Y +G    K  
Sbjct: 139  FLKFTDIYVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPIFVDFTYKRG----KDN 194

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            + +  V IGR+PIMLRS +CVL  K   EL  L ECPLDPGGYFI+ GTEKV+L+QEQLS
Sbjct: 195  VTQRRVPIGRMPIMLRSSKCVLSNKKPNELHLLNECPLDPGGYFIVNGTEKVILVQEQLS 254

Query: 194  KNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            KNR+I++TD KK  + ASVTSS+   KSK+ I ++K ++YL  N   + +P+++V+KAMG
Sbjct: 255  KNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRLYLRHNVLSEDVPLVIVLKAMG 314

Query: 253  MESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPN 309
            + SD+E++ +V G D  Y      + EE    +++TQ++AL+++  K+K  R   G    
Sbjct: 315  VHSDKEMMLLVAGIDDVYQEDFAINFEEAIKQNVFTQQQALDWIGSKIKINRGKVGGYKK 374

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
                 A   +  V +++V V N +FRPK  YVA M RR++ A  +   +DD+DYVGNKRL
Sbjct: 375  THIEEAIEAISSVVISHVEVTNMDFRPKAIYVANMARRVLMAKHDPSMVDDRDYVGNKRL 434

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTL 427
            EL+GQL++LLFEDLFK    +++  +  +L K  R   FD    +    + IT G+ R +
Sbjct: 435  ELAGQLLALLFEDLFKKFCFDIKMNITKVLGK-RRREIFDAMSVVALHGNHITHGMNRAI 493

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GML
Sbjct: 494  STGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGML 553

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP DTPEGEACGLVKNLALMTH+TT++EEGP+  L + LG ED+  LSG+E++   ++++
Sbjct: 554  CPSDTPEGEACGLVKNLALMTHITTNDEEGPVSKLVFMLGAEDITTLSGKEIYGLGAYII 613

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG  +   RRPK F +  R+LRR G++ EFVS+++N  QR V+IA+D GR+CRPL++ 
Sbjct: 614  SMNGTPIAMTRRPKHFLNSFRRLRRMGRVSEFVSIYINHHQRAVHIATDDGRICRPLIVV 673

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            + G   +   H+ +L DG   FDDFL +GL+EYLDVNEEN++ IA+YE D    TTH+EI
Sbjct: 674  ENGKPLVNSRHLGKLRDGSMQFDDFLAQGLVEYLDVNEENDSNIAIYEKDVVDITTHLEI 733

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLYL+VYPQ+P+
Sbjct: 734  EPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPM 793

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            + TRTIEL+ YD L AGQNATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY A  
Sbjct: 794  VKTRTIELIKYDHLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANL 853

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            + Y N + DR+  P+    G   + +  H+     +LD DGLAA GE++    VYINKE 
Sbjct: 854  KSYPNGSEDRLRGPE---IGENNVPIAKHA-----LLDSDGLAAVGEVVSQGQVYINKEV 905

Query: 848  PLET-RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            P       I        + Y  A  TYK PD     +D+V +   +      K   R TR
Sbjct: 906  PAAAFSAGITGSDAGRPTDYNPAPMTYKLPD--PSYIDKVMVSVTEGESKIYKVQTRQTR 963

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPE+GDKFSSRHGQKGV G I +Q D PF+++GI PD+IMNPHGFPSRMTVGK++EL+ G
Sbjct: 964  RPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKLLELVAG 1023

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G+  YG+AFG        VE +S  LV  GFSY GKD + SGITG PL  Y+F 
Sbjct: 1024 KAGVLSGQHGYGTAFG-----GSPVEEMSAILVDKGFSYGGKDYLTSGITGDPLPFYVFT 1078

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPIYYQKLKHMV DKMH+R +GPR  LTRQPTEGR+R+GGLR+GEMERDCLIAYG S L+
Sbjct: 1079 GPIYYQKLKHMVQDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1138

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD  EV +C  CG +GY N       C  C++   +  M +PYA KLLIQEL 
Sbjct: 1139 LERLMLSSDKHEVDICEKCGFMGYQN------WCQRCRSSRGVVKMTIPYAAKLLIQELL 1192

Query: 1147 SMNIVPRLKLAE 1158
            SMN+  RLKL +
Sbjct: 1193 SMNVTARLKLED 1204


>gi|449708606|gb|EMD48033.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica KU27]
          Length = 1141

 Score = 1219 bits (3153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1141 (52%), Positives = 815/1141 (71%), Gaps = 39/1141 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L   + +V DK++L+P F+K RGLV+QH+DSFNYF++  I++IV+AND+I    DP  +L
Sbjct: 32   LGRAINTVEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYL 91

Query: 81   RFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            ++ DV++  P + VD   E + P  CRL D++Y APIL NI+Y + +   + T     V 
Sbjct: 92   KYLDVKVDTPCVEVDYKKESITPQECRLRDISYTAPILANIQYTRDNKIFRKT-----VT 146

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG +PIML+S  CVLY     E  R GECP+DPGGYFI+KG E+V+L QEQ+SKNR++I+
Sbjct: 147  IGYMPIMLQSKHCVLYNNTFEEFIRHGECPMDPGGYFIVKGVERVILSQEQMSKNRILIE 206

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            T  +G ++ASVTS+T  VKS+TV+ ++KGK+YL  N   + +PIM+V+KAMGMESD E +
Sbjct: 207  TTTQGFLSASVTSATHEVKSRTVVYLKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFL 266

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPPNDREGRA 315
            Q VG    Y++ ++ SIEEC   D+  Q +AL Y+   +K     +      P   E R 
Sbjct: 267  QFVGN--HYTSKMINSIEECKAKDVLNQREALRYIGNHLKIYTGQKGYISKRPKIEEAR- 323

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L ++ L ++ V+  NF+ K  Y+A+M+  +++A    + +DDKDY GNKR+EL+GQL
Sbjct: 324  -DVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGE-LDDKDYYGNKRMELAGQL 381

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   +++Q   +  L+K SRS  FD+ + I    IT GL  +LSTGN+ +K
Sbjct: 382  MSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLK 441

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQ SQWGM+CP DTPEG
Sbjct: 442  RFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEG 501

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            E+CGLVKN +L+T VTTD  +  ++++ + LGVED  L+SG+E++ P+S+LV  NG +LG
Sbjct: 502  ESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLG 561

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
             H+ P  F    R LRR G++G+ VS+ +NE QR + I+SDGGRVCRPL++ +   S+I 
Sbjct: 562  IHQNPIHFLKQCRLLRRHGRLGKKVSLHLNEMQRSINISSDGGRVCRPLIVVENCKSKIG 621

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
               ++++++G +S +D L+EGLIEYLDVNEENN+ IA+ E +    TTH+EI+P +ILGV
Sbjct: 622  PKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEHTTHLEIDPLSILGV 681

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYLL YPQ P++ T+TI++
Sbjct: 682  VAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDM 741

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + +DKL AGQNA VAVMSYSGYDIEDA ++NK+S+DRG+GRC V +K   + +KY N   
Sbjct: 742  INFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGAC 801

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DR++ P       ER    + S      LD DG+ +PG I+ P  +Y+NK+ PL T G++
Sbjct: 802  DRVVCP----TDEERELPKYKS------LDFDGVCSPGSILNPGSIYLNKQVPLNTIGTL 851

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
             + T + D  YR    TYKGP      VD+V + S++   L +K  +R +RRPELGDKFS
Sbjct: 852  TTDTIK-DDEYRREVLTYKGP--VPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFS 908

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV QED PF+  GICPD+IMNPHGFPSRMTVGK++EL+ GKAG+  G F
Sbjct: 909  SRHGQKGVTGLIVNQEDMPFTNTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSF 968

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
             YG+AFG      D ++ IS+ L++ G+SY+GK+ +YSGITG  L AYIF+GP+YYQKLK
Sbjct: 969  KYGTAFG-----GDKLDDISKILIEAGYSYDGKEELYSGITGKALHAYIFIGPVYYQKLK 1023

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GP+  LTRQPTEGR+R+GGLR+GEMERDCLI YGA+ L+ ERLM SSD
Sbjct: 1024 HMVLDKMHARARGPKSSLTRQPTEGRSRDGGLRLGEMERDCLIGYGATNLLLERLMYSSD 1083

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             F+V VC+ CGL+G+      +G C  C++    +++ +PYACKLL QE+QSMN+VPRL 
Sbjct: 1084 AFKVCVCKKCGLIGH------SGYCKFCESSLYCTNVTMPYACKLLFQEMQSMNVVPRLS 1137

Query: 1156 L 1156
            +
Sbjct: 1138 I 1138


>gi|407043800|gb|EKE42160.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1141

 Score = 1217 bits (3148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1141 (52%), Positives = 814/1141 (71%), Gaps = 39/1141 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L   + +V DK++L+P F+K RGLV+QH+DSFNYF++  I++IV+AND+I    DP  +L
Sbjct: 32   LGRAINTVEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYL 91

Query: 81   RFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            ++ DV++  P + VD   E + P  CRL D++Y APIL NI+Y + +   + T     V 
Sbjct: 92   KYLDVKVDTPCVEVDYKKESITPQECRLRDISYTAPILANIQYTRDNKIFRKT-----VT 146

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG +PIML+S  CVLY     E  R GECP+DPGGYFI+KG E+V+L QEQ+SKNR++I+
Sbjct: 147  IGYMPIMLQSKHCVLYNNTFEEFIRHGECPMDPGGYFIVKGVERVILSQEQMSKNRILIE 206

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            T  +G ++ASVTS+T  VKS+TV+ ++KGK+YL  N   + +PIM+V+KAMGMESD E +
Sbjct: 207  TTTQGFLSASVTSATHEVKSRTVVYLKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFL 266

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPPNDREGRA 315
            Q VG    Y++ ++ SIEEC   D+  Q +AL Y+   +K     +      P   E R 
Sbjct: 267  QFVGN--HYTSKMINSIEECKAKDVLNQREALRYIGNHLKIYTGQKGYISKRPKIEEAR- 323

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L ++ L ++ V+  NF+ K  Y+A+M+  +++A      +DDKDY GNKR+EL+GQL
Sbjct: 324  -DVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKAD-ETGELDDKDYYGNKRMELAGQL 381

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   +++Q   +  L+K SRS  FD+ + I    IT GL  +LSTGN+ +K
Sbjct: 382  MSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLK 441

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQ SQWGM+CP DTPEG
Sbjct: 442  RFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEG 501

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            E+CGLVKN +L+T VTTD  +  ++++ + LGVED  L+SG+E++ P+S+LV  NG +LG
Sbjct: 502  ESCGLVKNFSLLTEVTTDSNDQAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLG 561

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
             H+ P  F    R LRR G++G+ VS+ +NE QR + I+SDGGRVCRPL++ +   S+I 
Sbjct: 562  IHQNPIHFLKQCRLLRRHGRLGKKVSLHLNEMQRSINISSDGGRVCRPLIVVENCKSKIG 621

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
               ++++++G +S +D L+EGLIEYLDVNEENN+ IA+ E +    TTH+EI+P +ILGV
Sbjct: 622  PKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEHTTHLEIDPLSILGV 681

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYLL YPQ P++ T+TI++
Sbjct: 682  VAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDM 741

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + +DKL AGQNA VAVMSYSGYDIEDA ++NK+S+DRG+GRC V +K   + +KY N   
Sbjct: 742  INFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGAC 801

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DR++ P       ER    + S      LD DG+ +PG I+ P  +Y+NK+ PL T G++
Sbjct: 802  DRVVCP----TDEERELPKYKS------LDFDGVCSPGSILNPGSIYLNKQVPLNTIGTL 851

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
             + T + D  YR    TYKGP      VD+V + S++   L +K  +R +RRPELGDKFS
Sbjct: 852  TTDTIK-DDEYRREVLTYKGP--VPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFS 908

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV QED PF+  GICPD+IMNPHGFPSRMTVGK++EL+ GKAG+  G F
Sbjct: 909  SRHGQKGVTGLIVNQEDMPFTNTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSF 968

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
             YG+AFG      D ++ +S+ L++ G+SY+GK+ +YSGITG  L AYIF+GP+YYQKLK
Sbjct: 969  KYGTAFG-----GDKLDDMSKILIEAGYSYDGKEELYSGITGKALHAYIFIGPVYYQKLK 1023

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GP+  LTRQPTEGR+R+GGLR+GEMERDCLI YGA+ L+ ERLM SSD
Sbjct: 1024 HMVLDKMHARARGPKSSLTRQPTEGRSRDGGLRLGEMERDCLIGYGATNLLLERLMYSSD 1083

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             F+V VC+ CGL+G+      +G C  C++    +++ +PYACKLL QE+QSMN+VPRL 
Sbjct: 1084 AFKVCVCKKCGLIGH------SGYCKFCESSLYCTNVTMPYACKLLFQEMQSMNVVPRLS 1137

Query: 1156 L 1156
            +
Sbjct: 1138 I 1138


>gi|183232813|ref|XP_654890.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Entamoeba histolytica HM-1:IMSS]
 gi|169801863|gb|EAL49502.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1122

 Score = 1216 bits (3145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1141 (52%), Positives = 815/1141 (71%), Gaps = 39/1141 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L   + +V DK++L+P F+K RGLV+QH+DSFNYF++  I++IV+AND+I    DP  +L
Sbjct: 13   LGRAINTVEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYL 72

Query: 81   RFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            ++ DV++  P + VD   E + P  CRL D++Y APIL NI+Y + +   + T     V 
Sbjct: 73   KYLDVKVDTPCVEVDYKKESITPQECRLRDISYTAPILANIQYTRDNKIFRKT-----VT 127

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG +PIML+S  CVLY     E  R GECP+DPGGYFI+KG E+V+L QEQ+SKNR++I+
Sbjct: 128  IGYMPIMLQSKHCVLYNNTFEEFIRHGECPMDPGGYFIVKGVERVILSQEQMSKNRILIE 187

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            T  +G ++ASVTS+T  VKS+TV+ ++KGK+YL  N   + +PIM+V+KAMGMESD E +
Sbjct: 188  TTTQGFLSASVTSATHEVKSRTVVYLKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFL 247

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPPNDREGRA 315
            Q VG    Y++ ++ SIEEC   D+  Q +AL Y+   +K     +      P   E R 
Sbjct: 248  QFVGN--HYTSKMINSIEECKAKDVLNQREALRYIGNHLKIYTGQKGYISKRPKIEEAR- 304

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L ++ L ++ V+  NF+ K  Y+A+M+  +++A    + +DDKDY GNKR+EL+GQL
Sbjct: 305  -DVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGE-LDDKDYYGNKRMELAGQL 362

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   +++Q   +  L+K SRS  FD+ + I    IT GL  +LSTGN+ +K
Sbjct: 363  MSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLK 422

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQ SQWGM+CP DTPEG
Sbjct: 423  RFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEG 482

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            E+CGLVKN +L+T VTTD  +  ++++ + LGVED  L+SG+E++ P+S+LV  NG +LG
Sbjct: 483  ESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLG 542

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
             H+ P  F    R LRR G++G+ VS+ +NE QR + I+SDGGRVCRPL++ +   S+I 
Sbjct: 543  IHQNPIHFLKQCRLLRRHGRLGKKVSLHLNEMQRSINISSDGGRVCRPLIVVENCKSKIG 602

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
               ++++++G +S +D L+EGLIEYLDVNEENN+ IA+ E +    TTH+EI+P +ILGV
Sbjct: 603  PKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEHTTHLEIDPLSILGV 662

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYLL YPQ P++ T+TI++
Sbjct: 663  VAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDM 722

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + +DKL AGQNA VAVMSYSGYDIEDA ++NK+S+DRG+GRC V +K   + +KY N   
Sbjct: 723  INFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGAC 782

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DR++ P       ER    + S      LD DG+ +PG I+ P  +Y+NK+ PL T G++
Sbjct: 783  DRVVCP----TDEERELPKYKS------LDFDGVCSPGSILNPGSIYLNKQVPLNTIGTL 832

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
             + T + D  YR    TYKGP      VD+V + S++   L +K  +R +RRPELGDKFS
Sbjct: 833  TTDTIK-DDEYRREVLTYKGP--VPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFS 889

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV QED PF+  GICPD+IMNPHGFPSRMTVGK++EL+ GKAG+  G F
Sbjct: 890  SRHGQKGVTGLIVNQEDMPFTNTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSF 949

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
             YG+AFG      D ++ +S+ L++ G+SY+GK+ +YSGITG  L AYIF+GP+YYQKLK
Sbjct: 950  KYGTAFG-----GDKLDDMSKILIEAGYSYDGKEELYSGITGKALHAYIFIGPVYYQKLK 1004

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GP+  LTRQPTEGR+R+GGLR+GEMERDCLI YGA+ L+ ERLM SSD
Sbjct: 1005 HMVLDKMHARARGPKSSLTRQPTEGRSRDGGLRLGEMERDCLIGYGATNLLLERLMYSSD 1064

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             F+V VC+ CGL+G+      +G C  C++    +++ +PYACKLL QE+QSMN+VPRL 
Sbjct: 1065 AFKVCVCKKCGLIGH------SGYCKFCESSLYCTNVTMPYACKLLFQEMQSMNVVPRLS 1118

Query: 1156 L 1156
            +
Sbjct: 1119 I 1119


>gi|378727686|gb|EHY54145.1| DNA-directed RNA polymerase III subunit C2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1225

 Score = 1215 bits (3143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1163 (52%), Positives = 806/1163 (69%), Gaps = 50/1163 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DSFN+FV   ++KI+ A   I S IDP  
Sbjct: 80   KSLTDPIDTARDKWNLLPAFLKVKGLVKQHIDSFNHFVEVELKKIIDAEPVITSDIDPDF 139

Query: 79   FLRFKDVRIGQPSMTVDGVSE--------KLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
            +++++++ +G+P    + + +         + P+ CRL DMTYAAPILV+I Y +     
Sbjct: 140  YIKYENIYVGKPRRYDEHMGDLRDSKDESTVTPNECRLRDMTYAAPILVDIRYTKS---- 195

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            K    +  + IGR+PIMLRS RCVL  K EAE+  + ECPLDPGGYFI+ GTEKV+L+QE
Sbjct: 196  KVAYRRKGMPIGRLPIMLRSSRCVLANKSEAEMCAMDECPLDPGGYFIVNGTEKVILVQE 255

Query: 191  QLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMK 249
            QLSKNR+I++ D KK  I ASVTSST   KSK+ I ++K  +Y+  N   + +PI V++K
Sbjct: 256  QLSKNRIIVEADPKKELITASVTSSTHARKSKSYIVLKKDMLYMRHNILNEDVPICVLLK 315

Query: 250  AMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTF 304
            AMG+ SD +++ +V G D         + EE   L I+TQ++AL+YL  ++K     + F
Sbjct: 316  AMGVTSDMDMMAIVAGTDSTLQDDFAINFEETIKLGIHTQQQALDYLGARIKITRKPTPF 375

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G    +    A   + +VF+A+VP+ N NFRPK  YVA M RR++ A  N   +DD+DYV
Sbjct: 376  GQSRRNYVQEALEAVSNVFIAHVPIENLNFRPKAIYVAHMARRVLMAKQNPALVDDRDYV 435

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVG 422
            GNKRLEL+GQL+SLLFEDLFK    +++  +D +L KP+R+   D    ++   + IT G
Sbjct: 436  GNKRLELAGQLLSLLFEDLFKKYNYDIKMNMDKVLRKPNRTEMADPCTVMMGHANHITQG 495

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            + R ++TGN+++KRF+M R G+T +L+RLSFI +LG MTR+S QFEK+RKVSGPRALQPS
Sbjct: 496  MNRAIATGNWNLKRFRMDRAGVTHLLSRLSFIASLGMMTRISSQFEKTRKVSGPRALQPS 555

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
             +GMLCP DTPEGEACGLVKNLALMTH+TTD+EE P+  L + LG ED+  + G EL+ P
Sbjct: 556  SFGMLCPADTPEGEACGLVKNLALMTHITTDDEEAPIKRLIFMLGAEDIVTVGGTELYAP 615

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
             S+LV+ NG  +   R+P  F    R+LRR+G++ EFVS F+N   R + +A+D GR+CR
Sbjct: 616  GSYLVLLNGTPVATTRQPSHFLTSFRRLRRSGRVSEFVSTFINHHHRTINVATDEGRICR 675

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            PL+I +   S++ + ++K L  G   FDDFL  GL+EYLDVNEEN++ IALYE D    T
Sbjct: 676  PLIIVEDKKSKVTKRYLKSLRQGSMDFDDFLARGLVEYLDVNEENDSNIALYESDINAST 735

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+D+LLYL+VY
Sbjct: 736  THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGFIANNQFLRIDTLLYLMVY 795

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ+PL  TRTIELV YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S+DRGFGRC V++K
Sbjct: 796  PQKPLCKTRTIELVKYDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRK 855

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAER-MQVVHHSNLLLLILDDDGLAAPGEIIKPNDV 841
            Y    + YAN T D +      GP  E  + V  H+     +LD+DG+A+ G  +   +V
Sbjct: 856  YPVSLKLYANGTKDTV-----EGPTMENGVPVKAHA-----LLDEDGIASVGAKVSQGEV 905

Query: 842  YINKESPLETRGSIMSPTGQTD--SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIK 899
            Y+NK  P     S +S T      +      Q Y+ PD     +D+V +   ++G+  IK
Sbjct: 906  YVNKYVPENANSSGLSDTASNSLGTSLMPQAQKYRLPD--PSYIDKVMVSEVESGNQLIK 963

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
               R TR PE+GDKFSSRHGQKGV G I +Q D PFS+RGI PD+IMNPHGFPSRMTVGK
Sbjct: 964  IQTRQTRVPEVGDKFSSRHGQKGVVGIIAEQVDMPFSDRGITPDIIMNPHGFPSRMTVGK 1023

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            M+EL+ GKAG+  G+F YG+AFG        +  +S+ L++ G+SY+GKD + SGITG P
Sbjct: 1024 MLELVAGKAGILKGKFEYGTAFG-----GSKLADLSKALIEAGYSYDGKDYLTSGITGEP 1078

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            L AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIA
Sbjct: 1079 LPAYVFMGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1138

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC----KNGDNISSMKLP 1135
            YGAS L+ ERLM+SSD  EV VC  CG + +         C  C    ++G N+  M LP
Sbjct: 1139 YGASQLLRERLMLSSDKHEVDVCESCGFMAF------GRWCQRCATAGESGSNVVRMTLP 1192

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YA KLL+ EL SMN+  RL +++
Sbjct: 1193 YAFKLLLNELGSMNVNTRLIVSD 1215


>gi|440631707|gb|ELR01626.1| DNA-directed RNA polymerase III subunit C2 [Geomyces destructans
            20631-21]
          Length = 1187

 Score = 1215 bits (3143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/1121 (53%), Positives = 790/1121 (70%), Gaps = 36/1121 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DSFNYFV+  I+ I++AN  + S +D + 
Sbjct: 85   KSLTDPIDTAKDKWNLLPAFLKVKGLVKQHIDSFNYFVDHEIKDILKANKFVRSDVDNTF 144

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN---PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            +L + D+R+G P        + LN   P+ CRL D+TYAAPI V+I+YV+G    K  + 
Sbjct: 145  WLEYTDIRVGAPERLDYDDRKPLNDVTPNECRLRDLTYAAPIFVDIKYVRG----KRIVA 200

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +  + IGR+PIML+S +C L  +++ +LA + EC LDPGGYFI+ GTEKV+L+QEQLSKN
Sbjct: 201  RRGIPIGRMPIMLKSSKCRLTSRNDGQLAYMNECALDPGGYFIVNGTEKVILVQEQLSKN 260

Query: 196  RVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            RVI++TD KK  ++ASVTSST   KSK+ + M+K ++YL  N   + +PI++ +KAM ++
Sbjct: 261  RVIVETDAKKSMVSASVTSSTHERKSKSYVVMKKERIYLQHNVLTEAVPIVIALKAMAVQ 320

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDR 311
            SD E++ +V G D  Y      + EE A L I++Q++ALE++ G+VK  +S FG P    
Sbjct: 321  SDHEMLLLVAGTDATYQDDFAVNFEEAAKLGIFSQQQALEWIGGRVKMGKSRFGQPQRRN 380

Query: 312  EGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
              +     L ++ + +VPV   +FRPK  YV  M+RR++ AM +   +DD+DYVGNKRLE
Sbjct: 381  FAQDGLEALANIVITHVPVVGLDFRPKALYVCFMVRRVLMAMHDPKLVDDRDYVGNKRLE 440

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLS 428
            L+GQL+SLLFEDLFK   S+++  +D +L KP+R++ FD  Q +    + IT G+ R +S
Sbjct: 441  LAGQLLSLLFEDLFKKFNSDLKMNIDKVLKKPNRTNEFDAYQHMQSHGNYITQGMNRAIS 500

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 501  TGNWSLKRFKMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 560

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P DTPEGEACGLVKNLALMTH+TT+++E P+  L + LG ED+  +SG+E+++  ++++ 
Sbjct: 561  PSDTPEGEACGLVKNLALMTHITTNDDEEPVRKLVFVLGAEDIVSMSGKEIYDDGAYVIF 620

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  L   R+PK F    +  RR G++ EFVS ++N     V+IA+D GR+CRPL+I  
Sbjct: 621  INGTPLALTRKPKAFLAGFKTFRRTGRVSEFVSCYINHHTSSVHIATDEGRICRPLIIVT 680

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G+ RIK+HH+  L DG   FDDFL  GL+EY+D NEEN+A+IALYE   TP TTH+EIE
Sbjct: 681  NGVPRIKDHHLAALRDGTMEFDDFLYRGLVEYIDCNEENDAMIALYENAITPATTHLEIE 740

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ P++
Sbjct: 741  PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFARIDTLLYLMVYPQAPMV 800

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL+ YDKL AGQNA VAVMSYSGYDIEDA+V+N++SLDRGFGRC V++KY     
Sbjct: 801  KTRTIELIRYDKLPAGQNAIVAVMSYSGYDIEDALVLNRASLDRGFGRCQVLRKYATKLL 860

Query: 789  KYANSTSDRILRPD---RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
            KYAN ++DRI   D   R   GA  + +  H      +L  DGLA  GEI +  DVY+ K
Sbjct: 861  KYANRSADRIGDRDFEVRASDGAT-VPIEKHQ-----LLGADGLAHVGEIARNGDVYVKK 914

Query: 846  ESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
            E+PL T  + +       S  + A  +Y+ PD     +D++ +   +N    IK   R T
Sbjct: 915  ETPLNTSSTGIGSDSGRSSDMKDASMSYRLPD--PAYIDKIMISQTENESTVIKVQTRQT 972

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPELGDKFSSRHGQKGV G I   +D PF++ GI PD+IMNPHGFPSRMTVGKM+ELL 
Sbjct: 973  RRPELGDKFSSRHGQKGVVGLIAPAQDLPFADSGITPDIIMNPHGFPSRMTVGKMLELLS 1032

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GK+GV  G   YG+ FG        VE + + LV  G++Y GK+ + SGITG  L AY+F
Sbjct: 1033 GKSGVIRGTHEYGTCFG-----GSKVEEMGQGLVDSGYAYAGKEFLTSGITGEALPAYVF 1087

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            MGPIYYQKLKHMV DK+H+R  GPR +LTRQPTEGR+R GGLR+GEMERDCLIAYGAS L
Sbjct: 1088 MGPIYYQKLKHMVQDKLHSRSRGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQL 1147

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126
            + ERLM+SSD  EV VC  CGL+GY       G C TC  G
Sbjct: 1148 LLERLMLSSDAHEVDVCERCGLMGY------QGWCQTCGKG 1182


>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
 gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
          Length = 1287

 Score = 1214 bits (3140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1222 (50%), Positives = 830/1222 (67%), Gaps = 91/1222 (7%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            M++E S K+++L D   L  PV ++ DK++LLP FLK  GLVK H+DS+NYFV T I+ I
Sbjct: 87   MEIEES-KNDKLDD---LLKPVNTMKDKWRLLPYFLKTEGLVKHHIDSYNYFVTTEIQSI 142

Query: 64   VRAN-DRIV-SGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNI 121
            VRAN +R++ S +DPS F+ F D R+G P +  + ++  L P MCR+ D+TYAAPI V++
Sbjct: 143  VRANANRMIRSDVDPSFFIEFLDARVGMPKLEENMITVDLTPMMCRMRDITYAAPIFVDV 202

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            +YV+G+    T + K +V IGRIP+MLRS  C+L+GK  AE+ +L ECP DPGGYF++KG
Sbjct: 203  DYVRGN----TVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMVKLNECPHDPGGYFVVKG 258

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            TEK +L+QEQLSKNR+I++ D K N  A+VTS+T   KS+T++  + GK+YL  N F  +
Sbjct: 259  TEKAILMQEQLSKNRIIVELDNKHNYCATVTSTTAESKSRTLVVFKNGKLYLRHNSFSDE 318

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR 301
            IP+ +V+KAMG+E++QE+  M+G +P +   ++ S++E     I+TQ +AL ++  K K 
Sbjct: 319  IPLCIVLKAMGIETEQEIFFMIGNEPHHQEGIINSLQEVHQEGIFTQRQALLFMSKKAKS 378

Query: 302  S---TFGS--------PPNDREGRAFS-------------------ILRDVFLANVPVHN 331
                TFGS             E   F+                    L  V L+++    
Sbjct: 379  KFKSTFGSSRGFDKSNAEESAENSGFTEFGGSKSSLCGTSIDDVLETLNRVLLSHIGTIY 438

Query: 332  NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
             +  PK  ++ +M +R+++A  +   +DDKDY GNKR+EL+GQL+S+LFEDLFK      
Sbjct: 439  TDLHPKALFLCLMAKRVLDASEDNSLLDDKDYYGNKRIELAGQLISILFEDLFKRFSVLT 498

Query: 392  QKTVDIILSK---------------PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            +K +D  L +                S S+  D  + +  D IT G++  LSTGN+ +KR
Sbjct: 499  KKQIDQTLIRYFQTRDASKAGTGRDDSNSTYPDCFRNLPTDIITRGMQTALSTGNWSIKR 558

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            F+M R GMTQVL R S+I +LG MTRV  QFEK+RKVSGPRALQPSQWG+LCPCDTPEGE
Sbjct: 559  FRMERSGMTQVLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQWGILCPCDTPEGE 618

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL-------------ELLSGEELHNPN 543
            +CGLVKNLAL TH+TTD     L SL + LGV+D+             E LS E+L N +
Sbjct: 619  SCGLVKNLALTTHITTDHCPQYLTSLLFTLGVQDISSCSYLDFNTKQSEKLSNEDLKNES 678

Query: 544  S--------FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
            S        + V  NG +LG HR+P+  A  +R LRR G IG+FVS+F N     V IA+
Sbjct: 679  SGKNNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFCNHIHSSVQIAT 738

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            DGGR+CRPL+I D+G+ R+KE H+++L  G   F DF+ +G++E++DVNEENN LIAL +
Sbjct: 739  DGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEENNLLIALRD 798

Query: 656  GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             + T +TTH+EI+P +ILGV++GLIPYP+HNQSPRNTYQCAMGKQ MG++ FNQ  R DS
Sbjct: 799  ENLTNETTHLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGSVGFNQFLRCDS 858

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            +LYLLVYPQ+PL  TRTIE++ +++L AGQN++VAVMS++GYDIEDAIVMNK+S+DRGF 
Sbjct: 859  VLYLLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAVMSFAGYDIEDAIVMNKASVDRGFA 918

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            RC V+K+ T   QK  N  S+R++RP   G G    +     N    ILD+DG+   G  
Sbjct: 919  RCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFKN--DSILDNDGVCNVGVQ 976

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +  +D+ +NK SP+ TR  +  P+    S Y+ +   YKGP   +  +DRV L  + +G+
Sbjct: 977  VSEDDIIVNKMSPINTREYVGDPSQFDLSEYKPSPVKYKGP--TSSYIDRVILTENADGN 1034

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
               K + R TRRPELGDKFSSRHGQKGV G I+ QED PFSE G CPDLIMNPHGFPSRM
Sbjct: 1035 QIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMNPHGFPSRM 1094

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK++EL+  KA V  G + YG+AFG        +E  ++ LV+HGF Y+GK+ + SG 
Sbjct: 1095 TVGKLLELISSKASVLDGNYRYGTAFG-----GTPLEESAKCLVEHGFHYSGKEYLTSGT 1149

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  ++AYIF+GPIYYQKLKHMVLDKMHARG GPR +LTRQPTEGR+++GGLR+GEMERD
Sbjct: 1150 TGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERD 1209

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CL+AYGAS L+ ERLM++SD FE  VC  CGL GY N+      C  CK+  ++S ++LP
Sbjct: 1210 CLVAYGASNLLIERLMLNSDVFETNVCNQCGLFGYNNY------CHYCKSSQDVSIIRLP 1263

Query: 1136 YACKLLIQELQSMNIVPRLKLA 1157
            YACKLL QELQ+MN+ PR++ +
Sbjct: 1264 YACKLLFQELQAMNVCPRIRTS 1285


>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
 gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
          Length = 1108

 Score = 1213 bits (3139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1127 (54%), Positives = 794/1127 (70%), Gaps = 33/1127 (2%)

Query: 45   VKQHLDSFNYFVNTGIRKIVRAN--DRIVSGIDPSIFLRFKDVRIGQPSMTVDG-VSEKL 101
            ++QH+DSF++FVN  +R+IV+ +    I S  DP  +LR+ D  +G+PS+  D   + + 
Sbjct: 1    MRQHIDSFDHFVNVEMRQIVQVSRWQLIRSDYDPKFYLRYTDCWVGEPSIDEDSYATTQA 60

Query: 102  NPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEA 161
             P  CRL D TY+API VN+ Y +G    +  + K  V+IGR+PIMLRS +C+L  K E 
Sbjct: 61   TPFQCRLRDCTYSAPIYVNVRYTRG----RQIVVKKKVMIGRMPIMLRSSKCLLRDKSER 116

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK-GNINASVTSSTETVKS 220
            ELA++ ECP DPGGYF+IKG EKV+LIQEQLSKNRVII+ D K G ++AS+TSST   KS
Sbjct: 117  ELAQMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVIIEEDSKTGCVSASITSSTRERKS 176

Query: 221  KTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC 280
            K  I ++ G+++L  N   + +PI V MKAMG+ESD E VQ VG +P     L  S+EE 
Sbjct: 177  KAYIFIKNGRLFLKHNTLAEDVPICVAMKAMGVESDLEFVQSVGSEPEVIDALALSLEEP 236

Query: 281  ANLDIYTQEKALEYLEGKV--KRSTFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPK 337
            + L I TQ  AL+Y+  K+  KR  FGS      E  A  +  +V L++VPV N +F  K
Sbjct: 237  SKLGIVTQRHALKYIGNKMRAKRGAFGSTRKLSPEDEARDVFANVVLSHVPVVNFDFHAK 296

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDI 397
              Y+  ++RR+V   L K ++DDKDY GNKRLEL+G L+SLLFEDLFK   ++++K  D+
Sbjct: 297  TIYIGHIVRRLVMVQLGKSSLDDKDYYGNKRLELAGSLLSLLFEDLFKHFNTDLKKQTDM 356

Query: 398  ILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTL 457
            +LSKP+R+  FD+ + I  DSI  G+   +S+GN+ +KRF+M R G+TQVL+RLS+I  L
Sbjct: 357  VLSKPNRAQAFDVIKTIRPDSIAYGMMSAISSGNWVLKRFRMDRAGVTQVLSRLSYISAL 416

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
            G MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLAL+ H+TTDEE  
Sbjct: 417  GMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEESE 476

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIG 577
             +  LC   GVED+ LLSG E+H+ N+FLV+ NGLI+G H RP      +R LRR G++G
Sbjct: 477  AIERLCRDCGVEDVTLLSGHEIHSRNAFLVLLNGLIVGVHTRPLWLVKSLRSLRRQGQMG 536

Query: 578  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--GISRIKEHHMKELLDGVRSFDDFLRE 635
            EFVS+++++ Q+ V+IA+DGGRVCRPL+I D+   + R+K+ H++ L  G     D LR+
Sbjct: 537  EFVSLYLHDGQKAVHIATDGGRVCRPLIIVDEKTALPRLKQVHIEGLALGTIHIKDLLRQ 596

Query: 636  GLIEYLDVNEENNALIALYEGD-ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
            G++EY+DVNEENN LIA+ E +      TH+EI+P T+LGV+AGLIP PHHNQSPRNTYQ
Sbjct: 597  GVVEYVDVNEENNCLIAVTERELEWMAYTHLEIDPMTLLGVVAGLIPNPHHNQSPRNTYQ 656

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQA+G +A NQ  R D +LY +VYP +P++ TRT++L+ +D + AGQNA +AVMSY
Sbjct: 657  SAMGKQAIGTVAINQYSRFDGMLYTMVYPHKPMVKTRTLDLINFDNIPAGQNACIAVMSY 716

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL-RPDRTG--PGAERM 811
            SGYDIEDA+V+NK+S+DRGFGRC+V+KK  A  ++Y N T DR    PD +    G E  
Sbjct: 717  SGYDIEDAVVLNKASVDRGFGRCMVLKKSQASVRRYQNGTMDRTCGAPDPSAFPSGEEDK 776

Query: 812  QVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQ 871
            +   +       +D DGL   GE+++   V +NKESP +T   +     Q   +Y     
Sbjct: 777  RYARYRG-----IDKDGLCMVGELMENGTVMVNKESPTDTSTPV-ERLAQVSYKYSGMSY 830

Query: 872  TYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 931
                P      VDRV + S++N    IK ++R  RRPELGDKF+SRHGQKGVCG IV Q 
Sbjct: 831  RSSAPS----YVDRVLISSNENEQFLIKVMLRQVRRPELGDKFASRHGQKGVCGLIVPQV 886

Query: 932  DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTV 991
            D PF+E+G  PDLIMNPHGFPSRMTVGK+IELL GKAGV  GR  Y SAFGE  G  DTV
Sbjct: 887  DMPFNEQGFPPDLIMNPHGFPSRMTVGKLIELLVGKAGVFEGRQAYASAFGEEFGSTDTV 946

Query: 992  ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1051
            +S    L+++G +Y GKD+ YSG+ G PL AYIF GP++YQKLKHMVLDKMHAR  GPR 
Sbjct: 947  QSAELALIRNGLNYTGKDIFYSGVNGAPLDAYIFSGPVFYQKLKHMVLDKMHARSRGPRA 1006

Query: 1052 MLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY 1111
            +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS LI ERLM SSD F   VC  CGLL Y 
Sbjct: 1007 VLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSASVCMTCGLLQYQ 1066

Query: 1112 NHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            N       C  C++G+ +S ++LPYACKLL QELQ+MN++PRL+L +
Sbjct: 1067 NW------CQYCRSGEKVSDIRLPYACKLLFQELQAMNVLPRLRLKD 1107


>gi|425771289|gb|EKV09736.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425776820|gb|EKV15021.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1208

 Score = 1212 bits (3137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1148 (52%), Positives = 798/1148 (69%), Gaps = 39/1148 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+ +  DK+ LLP FLKV+GLVKQHLDS+NYFV   ++KIV ++  I S +D + ++
Sbjct: 78   LTDPINTARDKWNLLPAFLKVKGLVKQHLDSYNYFVEVQMKKIVESSSTIRSDVDHNFYI 137

Query: 81   RFKDVRIGQPSMTV---DG---VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            +F D+ +  P       DG       + P  CRL D TYAAPILV+ EYV+G    +  +
Sbjct: 138  KFTDIYVASPRRADEQGDGGIDFESTITPQECRLRDTTYAAPILVDFEYVRG----RQRV 193

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             +  V IGRIPIMLRS +CVL  K  A+++ L ECPLDPGGYF++ GTEKV+L+QEQLSK
Sbjct: 194  IRRAVPIGRIPIMLRSSKCVLSNKTPAQMSVLNECPLDPGGYFVVNGTEKVILVQEQLSK 253

Query: 195  NRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
            NR+I++TD KK  + ASVTSS+   KSK+ I  +KG++Y+  N   + IPI++++KAMG+
Sbjct: 254  NRIIVETDPKKEIVQASVTSSSNERKSKSYIVSKKGRLYVKHNVLNEDIPIVILLKAMGI 313

Query: 254  ESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPPNDR 311
             +D+E++QMV G D  Y      + EE  N+D+YTQ++ALE++  ++K      +     
Sbjct: 314  HTDKEMMQMVTGDDSLYQDDFAINFEEAINVDVYTQQQALEWIGCRIKINRKQAAYRKTH 373

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A   +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GNKRLEL
Sbjct: 374  VQEAVEAIASVIISHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLEL 433

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLST 429
            +GQ+++LLFEDLFK    +++  +D +L+K +R+ +FD    +    + IT G+ R +ST
Sbjct: 434  AGQMLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTIVTMHGNHITQGMNRAIST 493

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLCP
Sbjct: 494  GNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCP 553

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LGVED+  + G++L+   ++ +  
Sbjct: 554  ADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDISSVGGQQLYARGAYTISI 613

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG   G  RRPK F +  R+LRR G++ EFVS+++N  QR V++A+D GR+CRPL++ + 
Sbjct: 614  NGTPTGLTRRPKSFLNAFRRLRRMGRVSEFVSIYINHHQRAVHVATDDGRICRPLIVVEN 673

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G S +   H+++L DG   FDDFL +GL+EYLDVNEEN++ IA+YE D +   TH+EIEP
Sbjct: 674  GKSLVGVQHLEKLRDGKMEFDDFLAQGLVEYLDVNEENDSYIAIYEKDISNTHTHLEIEP 733

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P++ 
Sbjct: 734  FTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMVK 793

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            +RTIEL  YD+L AGQNATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY    + 
Sbjct: 794  SRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTTLKS 853

Query: 790  YANSTSDRILRPDRTGPGAER-MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            Y N   D +      GP  E  + +  H+     +L+ DGLAA GE++   + YINK +P
Sbjct: 854  YPNGAKDSL-----KGPTFENGVPIRKHA-----LLESDGLAAVGEMVNNGESYINKVTP 903

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                    + +G        A   YK PD     +D+V + + +     IK L R TRRP
Sbjct: 904  RVQNSMGFTGSGMGGGDVIEASMNYKLPD--PSYIDKVLVSATEGETQLIKVLTRQTRRP 961

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            E+GDKFSSRHGQKGV G I  Q D PFS++GI PD+IMNPHGFPSRMTVGKM+EL+ GKA
Sbjct: 962  EVGDKFSSRHGQKGVVGIIADQADMPFSDQGINPDIIMNPHGFPSRMTVGKMLELVAGKA 1021

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G+  YG+ FG        VE +S+ L+  GFSY GKD + SGITG  L  Y+F GP
Sbjct: 1022 GVLSGQHGYGTCFG-----GSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGP 1076

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV DKMH+R  GP   LTRQPTEGR+RNGGLR+GEMERDCLIAYG S L+ E
Sbjct: 1077 IYYQKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMERDCLIAYGTSQLLLE 1136

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD  EV VC  CG +GY N       C  CK+  ++  M +PYA KLLIQEL SM
Sbjct: 1137 RLMISSDRHEVDVCEQCGFMGYLNW------CPGCKSSRSVVKMVIPYAAKLLIQELMSM 1190

Query: 1149 NIVPRLKL 1156
            N+  RLKL
Sbjct: 1191 NVTARLKL 1198


>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1208

 Score = 1210 bits (3131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1147 (52%), Positives = 792/1147 (69%), Gaps = 37/1147 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV ++  I S +D + ++
Sbjct: 78   LTDPIDTARDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQMKKIVESSSTIRSDVDHNFYI 137

Query: 81   RFKDVRIGQPSMTV---DG---VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            +F D+ +  P       DG       + P  CRL D TYAAPILV+ EYV+G    +  +
Sbjct: 138  KFTDIYVASPRRADEQGDGGLDFESTITPQECRLRDTTYAAPILVDFEYVRG----RQRV 193

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             +  V IGRIP+MLRS +CVL  K  A+++ L ECPLDPGGYF++ GTEKV+L+QEQLSK
Sbjct: 194  IRRAVPIGRIPMMLRSSKCVLSNKTPAQMSVLNECPLDPGGYFVVNGTEKVILVQEQLSK 253

Query: 195  NRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
            NR+I++TD K +I  ASVTSS+   KSK+ I  +KG++Y+  N   + IPI++++KAMG+
Sbjct: 254  NRIIVETDPKKDIVQASVTSSSNERKSKSYIVSKKGRLYVKHNVLNEDIPIVILLKAMGI 313

Query: 254  ESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPPNDR 311
             +D+E++QMV G D  Y      + EE  N+D+YTQ++AL+++  ++K      +     
Sbjct: 314  HTDKEMMQMVTGDDALYQDDFAINFEEAINVDVYTQQQALDWIGCRIKINRKQAAYRKTH 373

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A   +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GNKRLEL
Sbjct: 374  VQEAVEAIASVIISHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLEL 433

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLST 429
            +GQ+++LLFEDLFK    +++  +D +L+K +R+ +FD    +    + IT G+ R +ST
Sbjct: 434  AGQMLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTIVTMHGNHITQGMNRAIST 493

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLCP
Sbjct: 494  GNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCP 553

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TT++EEGP+ +L + LGVED+  + G++L+   ++ +  
Sbjct: 554  ADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDISSVGGQQLYARGAYTISI 613

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG   G  RRPK F +  R+LRR G++ EFVS+++N  QR V++A+D GR+CRPL++ + 
Sbjct: 614  NGTPTGLTRRPKSFLNAFRRLRRMGRVSEFVSIYINHHQRAVHVATDDGRICRPLIVVEN 673

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G S +   H+++L DG   FDDFL +GL+EYLDVNEEN++ IA+YE D T   TH+EIEP
Sbjct: 674  GKSLVGAQHLEKLRDGKMEFDDFLAQGLVEYLDVNEENDSYIAIYEKDITNTHTHLEIEP 733

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FT+LG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P++ 
Sbjct: 734  FTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMVK 793

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            +RTIEL  YD+L AGQNATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY    + 
Sbjct: 794  SRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTTLKS 853

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y N   D +  P        R            +L+ DGLAA GE++   + YINK +P 
Sbjct: 854  YPNGAKDSLRAPTFENGAPIRKHA---------LLESDGLAAVGEMVNNGETYINKVTPR 904

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
                   S           A   YK PD     +D+V + + +     IK L R TRRPE
Sbjct: 905  VQNSLGFSGPDIGGGDVLEAPMNYKLPD--PSYIDKVLVSATEGETQLIKVLTRQTRRPE 962

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGV G I  Q D PFS++GI PD+IMNPHGFPSRMTVGKM+EL+ GKAG
Sbjct: 963  VGDKFSSRHGQKGVVGIIADQADMPFSDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAG 1022

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            V  G+  YG+ FG        V+ +S+ L+  GFSY GKD + SGITG PL  Y+F GPI
Sbjct: 1023 VLSGQHGYGTCFG-----GSPVQEMSQILIDKGFSYGGKDYLTSGITGEPLPFYVFTGPI 1077

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMV DKMH+R  GP   LTRQPTEGR+RNGGLR+GEMERDCLIAYG S L+ ER
Sbjct: 1078 YYQKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMERDCLIAYGTSQLLLER 1137

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD  EV +C  CG +GY N       C  CK+  ++  M +PYA KLLIQEL SMN
Sbjct: 1138 LMISSDRHEVDICEKCGFMGYLNW------CPGCKSSRSVVKMVIPYAAKLLIQELMSMN 1191

Query: 1150 IVPRLKL 1156
            +  RLKL
Sbjct: 1192 VTARLKL 1198


>gi|237833217|ref|XP_002365906.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            ME49]
 gi|211963570|gb|EEA98765.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            ME49]
          Length = 1332

 Score = 1210 bits (3130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1197 (50%), Positives = 818/1197 (68%), Gaps = 83/1197 (6%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA-NDRIV-SGIDPSIFLR 81
            PV +V DK++LLP F   +GLV QH++S+N+FV+T ++ I+RA ++R+V S +DPS F+ 
Sbjct: 156  PVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNILRAPSNRLVKSDVDPSFFIE 215

Query: 82   FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI 141
            F ++ +G P      + ++L P +CR  ++TYAAP+ V+ EY +G       + +  V I
Sbjct: 216  FLNISVGTPRYEEGMILQRLTPRICRTREITYAAPVFVDAEYSKGDEI----IRRKHVEI 271

Query: 142  GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT 201
            G IP+MLRS  CVL+GKD   L RLGECP DPGGYFI+KGTEKVLL+QEQLSKNR+I++T
Sbjct: 272  GSIPVMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVET 331

Query: 202  DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
            D K N+ A+VTS+T   KS+T + ++  K+YL  N F+  +P  +V++AMG E+DQE++Q
Sbjct: 332  DMKHNVCATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQ 391

Query: 262  MVGR---------DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK------------ 300
            M+G          +    A+ L S+++C   ++ TQ++AL ++  +++            
Sbjct: 392  MIGAGGALADVTGNTAQEAVSL-SLQDCHTENVLTQQQALLWVGSRIRPKMQAKGFFTPV 450

Query: 301  --------RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
                    R   G         A  +L  V L+++    ++FR K  ++ +M+RR+++A 
Sbjct: 451  ARGALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAA 510

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS------- 405
             +   MDDKDY GNKRLEL+GQL+SLLFEDLFK   + V+K  D  LS+  ++       
Sbjct: 511  SDPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKKQADYALSRYHQARGGAGGL 570

Query: 406  -SRFDLSQF------IVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLG 458
             SR D   +      +  D IT G++  LSTGN+ +KRF+M R G++QVL+RLS+I TLG
Sbjct: 571  GSRKDEVPYPDCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLG 630

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
             MTR++ QFEK RKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLAL+THVTTDE+  P
Sbjct: 631  MMTRINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDPTP 690

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            + SL +CLGVED + +SGEELH+  ++LV+ NG +LG HRRP+     +R LRR G++GE
Sbjct: 691  ISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHGEVGE 750

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 638
            FVSV VNE  + VYIASDGGR+CRPL++ D G  R+   HM +L +G   F D LR  ++
Sbjct: 751  FVSVHVNEAHKTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLENGEMCFMDLLRSSIL 810

Query: 639  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
            E++DVNEENN LIAL E D T +TTH+EI+P T+LGV+AGLI +P+HNQSPRNTYQCAMG
Sbjct: 811  EWIDVNEENNLLIALREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTYQCAMG 870

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQAMG IA+NQ  R D+LLYLLVYPQ+PL  +RT++LV +++L AGQNA+VA+MS+SGYD
Sbjct: 871  KQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPAGQNASVAIMSFSGYD 930

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQV-V 814
            IEDAIV+N+ ++DRGFGRC  +++Y+   +KY N ++DR   P     +GPG+ +    +
Sbjct: 931  IEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVAQASGPGSGKAASGL 990

Query: 815  HHSNLL----------LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
            H  +               L+DDG+   GE+++ + VY++K SP  TR  +  P    +S
Sbjct: 991  HRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTREHVSDPLQLDNS 1050

Query: 865  RYRSARQTYKGPDGETCV---VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             Y  +   YK     T V   V+RV    + +G    K ++R TR PELGDKFSSRHGQK
Sbjct: 1051 LYAPSFARYK-----TVVPSYVERVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQK 1105

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            GV G I   ED PF+E G CPDLIMNPHGFPSRMTVGKM+EL+ GK+ +  G   YG+AF
Sbjct: 1106 GVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQVGACQYGTAF 1165

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            G        VE++ E L  HGF Y+GK+ + SGITG  LQ Y+F GPIYYQKLKHMV DK
Sbjct: 1166 G-----GVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDK 1220

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HARG GPR +LTRQPTEGRA+ GGLR+GEMERDCL+AYG+S L+ ERLM+SSD FE  V
Sbjct: 1221 IHARGRGPRQLLTRQPTEGRAKEGGLRLGEMERDCLVAYGSSALLMERLMLSSDVFEASV 1280

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            C  CGL+GY       G C  CK+G +++ +++PYACKLL QEL SMN+ PRL + E
Sbjct: 1281 CSTCGLMGY------EGWCPYCKSGKHVAPIRMPYACKLLFQELMSMNVCPRLHIKE 1331


>gi|358378199|gb|EHK15881.1| hypothetical protein TRIVIDRAFT_206553 [Trichoderma virens Gv29-8]
          Length = 1157

 Score = 1210 bits (3130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1167 (52%), Positives = 807/1167 (69%), Gaps = 49/1167 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV T I++IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVETEIKEIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQP---SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+ +P     T      ++ P  CRL DMTYAAPI V+I Y++    
Sbjct: 73   DVDSNFWLDFTDIRVDRPRRLDYTDSKSRTEVTPMECRLRDMTYAAPIFVDIAYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+PIML+SC+C L G + +++ ++ ECPLDPGGYFI+ GTEKV+LIQ
Sbjct: 129  DKQKIVRKNVPLGRMPIMLKSCKCRLSGANNSQMEQMNECPLDPGGYFIVNGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K N I+ASVTSST   KSKT + ++K K+ L  N  V+ IPI++++
Sbjct: 189  EQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTLKKDKITLTHNILVEGIPIVIIL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    L + +E A   I+TQ +ALEY+  +VK    +  
Sbjct: 249  KALGGLSDYEIMQLVAGSDGRYQDEFLVNFDEAAKAGIFTQHQALEYIGSRVKMGSRKGQ 308

Query: 304  FGSPP---NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG+     N  EG     L ++ +A+VP+   +F PK  YVA+M RR++ A  +   +DD
Sbjct: 309  FGAQARRNNVEEG--LDALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDPKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK  + EV+ ++D  L K +R+   D    I    +S
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFLKKNNRAVPLDAVHMISNHANS 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I +G+ R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGLGINRAIQSGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E P++   + L  GVE +   SG
Sbjct: 487  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVMRWIFTLDVGVEPIRNFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK F    R +RR G I  FV +  N     ++IA+D
Sbjct: 547  AEMHREGSYIIHVNGTPFALTRYPKRFTHRFRTMRRRGWISPFVGIHTNSHFNAIHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K  H++ L  G  +FDDFL +G++EYLDVNEEN+ALI +YE 
Sbjct: 607  EGRICRPYIIVKNGKQKLKPEHLRLLQMGKVTFDDFLTKGIVEYLDVNEENDALITIYED 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA NQ  R+D+L
Sbjct: 667  QVTMSTTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRP-DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            C V +KYT   QKY N   +RI  P +    G  R    H +      LDDDGLA  G+ 
Sbjct: 787  CQVFRKYTTELQKYPNGRRERIGDPLNEIDNGVMRRIKKHEA------LDDDGLAIVGQR 840

Query: 836  IKPNDVYINKESPLETRGSIMSPTG----QTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            I   +  + KE+PL+     M+ TG    +  S YR    +Y+  D     +D+V +   
Sbjct: 841  IHSGEAMVKKETPLD-----MTTTGIGLDRGPSEYRDTAVSYRIAD--PAYIDKVMISQT 893

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            +     IK   R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+CPD+IMNPHGF
Sbjct: 894  EKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGF 953

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTVGK++E L GKA +  GR  YG  FG+ +  +  VE +S+ LV HGFS+ GKD  
Sbjct: 954  PSRMTVGKLLECLTGKASIVHGRKEYG--FGD-AFRSHPVEQVSKVLVDHGFSWEGKDYF 1010

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             SGITG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GE
Sbjct: 1011 TSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGE 1070

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G C TCK+   ++ 
Sbjct: 1071 MERDCLIAYGASQLLLERLMLSSDGVMIDICQQCGLFGY------RGYCGTCKSTREVTK 1124

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAE 1158
            M++PYA KLL+QEL SMN+  RL+L +
Sbjct: 1125 MQMPYAAKLLVQELISMNVGVRLQLED 1151


>gi|221508871|gb|EEE34440.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1324

 Score = 1209 bits (3129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1197 (50%), Positives = 818/1197 (68%), Gaps = 83/1197 (6%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA-NDRIV-SGIDPSIFLR 81
            PV +V DK++LLP F   +GLV QH++S+N+FV+T ++ I+RA ++R+V S +DPS F+ 
Sbjct: 148  PVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNILRAPSNRLVKSDVDPSFFIE 207

Query: 82   FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI 141
            F ++ +G P      + ++L P +CR  ++TYAAP+ V+ EY +G       + +  V I
Sbjct: 208  FLNISVGTPRYEEGMILQRLTPRICRTREITYAAPVFVDAEYSKGDEI----IRRKHVEI 263

Query: 142  GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT 201
            G IP+MLRS  CVL+GKD   L RLGECP DPGGYFI+KGTEKVLL+QEQLSKNR+I++T
Sbjct: 264  GSIPVMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVET 323

Query: 202  DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
            D K N+ A+VTS+T   KS+T + ++  K+YL  N F+  +P  +V++AMG E+DQE++Q
Sbjct: 324  DMKHNVCATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQ 383

Query: 262  MVGR---------DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK------------ 300
            M+G          +    A+ L S+++C   ++ TQ++AL ++  +++            
Sbjct: 384  MIGAGGALADVTGNTAQEAVSL-SLQDCHTENVLTQQQALLWVGSRIRPKMQAKGFFTPV 442

Query: 301  --------RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
                    R   G         A  +L  V L+++    ++FR K  ++ +M+RR+++A 
Sbjct: 443  ARGALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAA 502

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS------- 405
             +   MDDKDY GNKRLEL+GQL+SLLFEDLFK   + V+K  D  LS+  ++       
Sbjct: 503  SDPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKKQADYALSRYHQARGGAGGL 562

Query: 406  -SRFDLSQF------IVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLG 458
             SR D   +      +  D IT G++  LSTGN+ +KRF+M R G++QVL+RLS+I TLG
Sbjct: 563  GSRKDEVPYPDCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLG 622

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
             MTR++ QFEK RKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLAL+THVTTDE+  P
Sbjct: 623  MMTRINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDPTP 682

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            + SL +CLGVED + +SGEELH+  ++LV+ NG +LG HRRP+     +R LRR G++GE
Sbjct: 683  ISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHGEVGE 742

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 638
            FVSV VNE  + VYIASDGGR+CRPL++ D G  R+   HM +L +G   F D LR  ++
Sbjct: 743  FVSVHVNEAHKTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLENGEMCFMDLLRSSIL 802

Query: 639  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
            E++DVNEENN LIAL E D T +TTH+EI+P T+LGV+AGLI +P+HNQSPRNTYQCAMG
Sbjct: 803  EWIDVNEENNLLIALREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTYQCAMG 862

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQAMG IA+NQ  R D+LLYLLVYPQ+PL  +RT++LV +++L AGQNA+VA+MS+SGYD
Sbjct: 863  KQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPAGQNASVAIMSFSGYD 922

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQV-V 814
            IEDAIV+N+ ++DRGFGRC  +++Y+   +KY N ++DR   P     +GPG+ +    +
Sbjct: 923  IEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVAQASGPGSGKAASGL 982

Query: 815  HHSNLL----------LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
            H  +               L+DDG+   GE+++ + VY++K SP  TR  +  P    +S
Sbjct: 983  HRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTREHVSDPLQLDNS 1042

Query: 865  RYRSARQTYKGPDGETCV---VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             Y  +   YK     T V   V+RV    + +G    K ++R TR PELGDKFSSRHGQK
Sbjct: 1043 LYAPSFARYK-----TVVPSYVERVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQK 1097

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            GV G I   ED PF+E G CPDLIMNPHGFPSRMTVGKM+EL+ GK+ +  G   YG+AF
Sbjct: 1098 GVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQVGACQYGTAF 1157

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            G        VE++ E L  HGF Y+GK+ + SGITG  LQ Y+F GPIYYQKLKHMV DK
Sbjct: 1158 G-----GVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDK 1212

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HARG GPR +LTRQPTEGRA+ GGLR+GEMERDCL+AYG+S L+ ERLM+SSD FE  V
Sbjct: 1213 IHARGRGPRQLLTRQPTEGRAKEGGLRLGEMERDCLVAYGSSALLMERLMLSSDVFEASV 1272

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            C  CGL+GY       G C  CK+G +++ +++PYACKLL QEL SMN+ PRL + E
Sbjct: 1273 CSTCGLMGY------EGWCPYCKSGKHVAPIRMPYACKLLFQELMSMNVCPRLHIKE 1323


>gi|221488368|gb|EEE26582.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            GT1]
          Length = 1328

 Score = 1209 bits (3129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1197 (50%), Positives = 818/1197 (68%), Gaps = 83/1197 (6%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA-NDRIV-SGIDPSIFLR 81
            PV +V DK++LLP F   +GLV QH++S+N+FV+T ++ I+RA ++R+V S +DPS F+ 
Sbjct: 152  PVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNILRAPSNRLVKSDVDPSFFIE 211

Query: 82   FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI 141
            F ++ +G P      + ++L P +CR  ++TYAAP+ V+ EY +G       + +  V I
Sbjct: 212  FLNISVGTPRYEEGMILQRLTPRICRTREITYAAPVFVDAEYSKGDEI----IRRKHVEI 267

Query: 142  GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT 201
            G IP+MLRS  CVL+GKD   L RLGECP DPGGYFI+KGTEKVLL+QEQLSKNR+I++T
Sbjct: 268  GSIPVMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVET 327

Query: 202  DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
            D K N+ A+VTS+T   KS+T + ++  K+YL  N F+  +P  +V++AMG E+DQE++Q
Sbjct: 328  DMKHNVCATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQ 387

Query: 262  MVGR---------DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK------------ 300
            M+G          +    A+ L S+++C   ++ TQ++AL ++  +++            
Sbjct: 388  MIGAGGALADVTGNTAQEAVSL-SLQDCHTENVLTQQQALLWVGSRIRPKMQAKGFFTPV 446

Query: 301  --------RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
                    R   G         A  +L  V L+++    ++FR K  ++ +M+RR+++A 
Sbjct: 447  ARGALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAA 506

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS------- 405
             +   MDDKDY GNKRLEL+GQL+SLLFEDLFK   + V+K  D  LS+  ++       
Sbjct: 507  SDPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKKQADYALSRYHQARGGAGGL 566

Query: 406  -SRFDLSQF------IVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLG 458
             SR D   +      +  D IT G++  LSTGN+ +KRF+M R G++QVL+RLS+I TLG
Sbjct: 567  GSRKDEVPYPDCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLG 626

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
             MTR++ QFEK RKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLAL+THVTTDE+  P
Sbjct: 627  MMTRINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDPTP 686

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            + SL +CLGVED + +SGEELH+  ++LV+ NG +LG HRRP+     +R LRR G++GE
Sbjct: 687  ISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHGEVGE 746

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 638
            FVSV VNE  + VYIASDGGR+CRPL++ D G  R+   HM +L +G   F D LR  ++
Sbjct: 747  FVSVHVNEAHKTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLENGEMCFMDLLRSSIL 806

Query: 639  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
            E++DVNEENN LIAL E D T +TTH+EI+P T+LGV+AGLI +P+HNQSPRNTYQCAMG
Sbjct: 807  EWIDVNEENNLLIALREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTYQCAMG 866

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQAMG IA+NQ  R D+LLYLLVYPQ+PL  +RT++LV +++L AGQNA+VA+MS+SGYD
Sbjct: 867  KQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPAGQNASVAIMSFSGYD 926

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQV-V 814
            IEDAIV+N+ ++DRGFGRC  +++Y+   +KY N ++DR   P     +GPG+ +    +
Sbjct: 927  IEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVAQASGPGSGKAASGL 986

Query: 815  HHSNLL----------LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
            H  +               L+DDG+   GE+++ + VY++K SP  TR  +  P    +S
Sbjct: 987  HRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTREHVSDPLQLDNS 1046

Query: 865  RYRSARQTYKGPDGETCV---VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             Y  +   YK     T V   V+RV    + +G    K ++R TR PELGDKFSSRHGQK
Sbjct: 1047 LYAPSFARYK-----TVVPSYVERVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQK 1101

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            GV G I   ED PF+E G CPDLIMNPHGFPSRMTVGKM+EL+ GK+ +  G   YG+AF
Sbjct: 1102 GVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSALQVGACQYGTAF 1161

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            G        VE++ E L  HGF Y+GK+ + SGITG  LQ Y+F GPIYYQKLKHMV DK
Sbjct: 1162 G-----GVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDK 1216

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HARG GPR +LTRQPTEGRA+ GGLR+GEMERDCL+AYG+S L+ ERLM+SSD FE  V
Sbjct: 1217 IHARGRGPRQLLTRQPTEGRAKEGGLRLGEMERDCLVAYGSSALLMERLMLSSDVFEASV 1276

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            C  CGL+GY       G C  CK+G +++ +++PYACKLL QEL SMN+ PRL + E
Sbjct: 1277 CSTCGLMGY------EGWCPYCKSGKHVAPIRMPYACKLLFQELMSMNVCPRLHIKE 1327


>gi|401408519|ref|XP_003883708.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
 gi|325118125|emb|CBZ53676.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
          Length = 1366

 Score = 1206 bits (3121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1224 (50%), Positives = 829/1224 (67%), Gaps = 100/1224 (8%)

Query: 12   DEQLPDK------QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR 65
            DE LP K      +  A PV +V DK++LLP F   +GLV QH++S+N+FV T ++ I+R
Sbjct: 165  DEALPRKGDPCLGEDSAKPVCTVPDKWRLLPAFFAAKGLVHQHIESYNFFVTTELQNILR 224

Query: 66   A-NDRIV-SGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEY 123
            A ++R+V S IDPS F+ F ++ +G P      + ++L P +CR  ++TYAAP+ V+ EY
Sbjct: 225  APSNRLVKSDIDPSFFIEFLNISVGTPRYEEGMILQRLTPRICRTREITYAAPVFVDAEY 284

Query: 124  VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTE 183
             +G       + + +V IG IP+MLRS  CVL+GKD A + +LGECP DPGGYFI+KGTE
Sbjct: 285  SKGDEI----IRRKNVEIGSIPVMLRSQVCVLHGKDPAAIQKLGECPFDPGGYFIVKGTE 340

Query: 184  KVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIP 243
            KVLL+QEQLSKNR+I++TD K N+ A+VTS+T   KS+T + ++  K+YL  N F+  +P
Sbjct: 341  KVLLMQEQLSKNRIIVETDMKHNVCATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLP 400

Query: 244  IMVVMKAMGMESDQEVVQMVGRDPRYS---------ALLLPSIEECANLDIYTQEKALEY 294
              +V++AMG E+DQE++QM+G     S         A+ L S+++C   ++ TQ +AL +
Sbjct: 401  ACIVLRAMGTETDQEIMQMIGAGASLSDVTGNTAQEAVSL-SLQDCHTENVLTQYQALLW 459

Query: 295  ----LEGKVKRSTFGSPPN------DREG-----------RAFSILRDVFLANVPVHNNN 333
                +  K++   F +P +      +R G            A  +L  V L+++    N+
Sbjct: 460  VGSRIRPKMQAKGFFTPVSRGPLLSERSGGGSRSAKSVIDEAVDVLHRVVLSHIETTGND 519

Query: 334  FRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK 393
            FR K  ++ +M+RR+++A  +   MDDKDY GNKRLEL+GQL+SLLFEDLFK   + V+K
Sbjct: 520  FRAKSRFLCLMIRRVLDAANDPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKK 579

Query: 394  TVDIILSKPSRS--------SRF-------DLSQFIVRDSITVGLERTLSTGNFDVKRFK 438
              D  LS+  ++        SR        D  + +  D IT G++  LSTGN+ +KRF+
Sbjct: 580  QADYALSRYHQARGGAAGGGSRLKDEVPYPDCFRNLPTDIITRGMQTALSTGNWTIKRFR 639

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            M R G++QVL+RLS+I TLG MTR++ QFEK RKVSGPRALQPSQWGMLCPCDTPEGE+C
Sbjct: 640  MERSGVSQVLSRLSYIATLGMMTRINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESC 699

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLAL+THVTTDE+  P+ SL +CLGVED + +SGEELH+  ++LV+ NG +LG HR
Sbjct: 700  GLVKNLALVTHVTTDEDPTPIASLAFCLGVEDADAISGEELHDRGTYLVMLNGSLLGVHR 759

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            RP+     +R LRR G++GEFVSV VNE  + VYIASDGGR+CRPL++ D+G  R+   H
Sbjct: 760  RPRQLMKNIRLLRRHGEVGEFVSVHVNEAHKTVYIASDGGRLCRPLIVVDRGRPRLLPEH 819

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            M +L +G   F D LR  ++E++DVNEENN LIAL E D T ++TH+EI+P T+LGV+AG
Sbjct: 820  MAQLENGEMCFMDLLRSSILEWIDVNEENNLLIALREEDITAESTHLEIDPLTLLGVVAG 879

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            LI +P+HNQSPRNTYQCAMGKQAMG IA+NQ  R D+LLYLLVYPQ+PL  +RT++LV +
Sbjct: 880  LIAFPNHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHF 939

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++L AGQNA+VA+MS+SGYDIEDAIV+N+ ++DRGFGRC  +++Y+   +KY N + DR 
Sbjct: 940  EQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSVDRT 999

Query: 799  LRPD-RTGPGAERMQVVHHSNLL------------------LLILDDDGLAAPGEIIKPN 839
              P    GPG                                  L+DDG+   GE+++ +
Sbjct: 1000 FPPPVAQGPGQRSRSAALAPGGFPRKVSPAMASGKGAVSRRFEALEDDGVVRVGELLEED 1059

Query: 840  DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV---VDRVALCSDKNGDL 896
             VY++K SP  TR  +  P    ++ Y  +   YK     T V   V+RV +C+D N D 
Sbjct: 1060 QVYVHKFSPTNTREHVSDPLQLDNAFYAPSFARYK-----TVVPSYVERV-ICTD-NSDG 1112

Query: 897  C--IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
            C   K ++R TR PELGDKFSSRHGQKGV G I   ED PF+E G CPDLIMNPHGFPSR
Sbjct: 1113 CRTYKVIMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSR 1172

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGKM+EL+ GK+ +  G   YG+AFG  S     V++++E L  HGF Y+GK+ + SG
Sbjct: 1173 MTVGKMMELIAGKSALQIGACQYGTAFGGVS-----VDTLAEILASHGFHYSGKEYLTSG 1227

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            ITG  LQ Y+F GPIYYQKLKHMV DK+HARG GPR +LTRQPTEGRA+ GGLR+GEMER
Sbjct: 1228 ITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEMER 1287

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCL+AYG+S L+ ERLM+SSD FE  VC  CGL+GY       G C  CK G N++ +++
Sbjct: 1288 DCLVAYGSSALLMERLMLSSDVFEACVCATCGLMGY------EGWCPYCKTGKNVAPIRM 1341

Query: 1135 PYACKLLIQELQSMNIVPRLKLAE 1158
            PYACKLL QEL SMN+ PRL + E
Sbjct: 1342 PYACKLLFQELMSMNVCPRLHIKE 1365


>gi|453088008|gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Mycosphaerella
            populorum SO2202]
          Length = 1204

 Score = 1206 bits (3121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1150 (51%), Positives = 797/1150 (69%), Gaps = 45/1150 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FL+V+GL+KQH DSF+YF++  ++KIV+AN  I S +    
Sbjct: 84   KSLTDPINTARDKWNLLPAFLQVKGLIKQHTDSFDYFIDVEMKKIVQANSMIHSQVKAEK 143

Query: 79   FLRFKDVRIGQPSMTVDG----VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            ++RF D+RIG+PS   D     V  ++ P+ CRL DMTY+API V+  Y + S      +
Sbjct: 144  WIRFTDIRIGKPSRIEDARAGYVQTEVTPNECRLRDMTYSAPIYVDFVYPRQS----GNV 199

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K DV+IGR+P+MLRS +CVL+G+ E+E++ L EC +DPGGYFI++G EKV+L+QEQLSK
Sbjct: 200  RKTDVLIGRVPMMLRSSKCVLHGRSESEMSFLNECAVDPGGYFIVRGQEKVILVQEQLSK 259

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG I ASVTS T  +K+KT + ++KG +YL  N  V+ +P+ ++M+AMG++
Sbjct: 260  NRVIVES-FKGVIQASVTSHTANIKTKTYVLVKKGHLYLKHNSLVEDVPVAIIMRAMGVQ 318

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPND--- 310
            SD E++ +  G D +Y     P++E  A   ++TQE+AL+++  ++K   F +   +   
Sbjct: 319  SDHEILLLAAGNDAQYQDEFAPNLELAALEGVFTQEQALDFIAARLKPDRFINKHKEFKT 378

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
             + +A   L    + +V V   NFRPK  Y+A M RR++ A+ +   +DD+DYVGNKRLE
Sbjct: 379  PKQQALEKLAGTIIPHVEVEGLNFRPKALYIAHMTRRVLMAINDPKLVDDRDYVGNKRLE 438

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLS 428
            L+GQ++SLLFEDLFK  I ++Q T+D +L K + +S FD  + +  +   IT G+ER +S
Sbjct: 439  LAGQMLSLLFEDLFKDSIRQIQMTMDKMLQKHNPTSEFDPVRIVEQIESRITSGMERAIS 498

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 499  TGNWTLKRFRMDRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 558

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              DTPEGEACGLVKNLALMTH+TT ++EGP+  + Y LG ED+   SG E++   ++++ 
Sbjct: 559  TSDTPEGEACGLVKNLALMTHITTADDEGPVRKMMYVLGAEDVTSASGTEIYGAGAYIIF 618

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG      R+PK F    RK RR G+I EFVS+F+N     V+IA+D GRVCRP+++ +
Sbjct: 619  INGTPAALTRQPKQFLLGFRKFRRMGRISEFVSIFINHHHNGVHIATDEGRVCRPMIVVE 678

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
            K  S++    ++ L  G  +FDD L  G++EYLDVNEEN++ IA+YE D     TH+EIE
Sbjct: 679  KAKSKVTARFLESLRKGTMTFDDALSRGIVEYLDVNEENDSNIAVYEKDINDSHTHLEIE 738

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++
Sbjct: 739  PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMV 798

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
            TTRTIELV YDKL AGQNA VAVMSYSGYDIEDA+V+NK+S DRGFGRC V KK +   +
Sbjct: 799  TTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSMPLK 858

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
             Y N  +DR+   DR    A   ++             DGL   G  +   D Y+ KE+P
Sbjct: 859  SYQNGYTDRL--ADRDPNNARHRKI-----------GKDGLVEVGSELDNGDTYMLKEAP 905

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            +    +I  P  Q   R+  A  +YK PD   C  D+V + ++   D  +K   R TRRP
Sbjct: 906  INQVQTI--PNSQ--QRWSPAHMSYKTPD--PCYADKVVITANDRNDTILKIQTRQTRRP 959

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            E+GDKFSSRHGQKGV G + +Q D PFS++G+ PD+IMNPHGFPSRMTVGKM+EL+ GKA
Sbjct: 960  EIGDKFSSRHGQKGVVGLLAEQADMPFSDQGVVPDIIMNPHGFPSRMTVGKMLELVSGKA 1019

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G+  YG+AFG        VE +   L+KHGFSY+GKD + SGITG  L  Y+F GP
Sbjct: 1020 GVLAGKQEYGTAFG-----GSKVEDMGAVLIKHGFSYSGKDCLTSGITGESLPFYVFFGP 1074

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV DKMHAR +GPR +LTRQPTEGR+R GGLR+GEMERDCLIAYGAS L+ E
Sbjct: 1075 IYYQKLKHMVQDKMHARATGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLE 1134

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD  +V VC+ CG++GY N         +         M +PYA KLLIQEL SM
Sbjct: 1135 RLMISSDAHDVDVCQTCGMMGYNNWCQSCSSSRSV------VRMTMPYAAKLLIQELMSM 1188

Query: 1149 NIVPRLKLAE 1158
            N+   L+LA+
Sbjct: 1189 NVKASLQLAD 1198


>gi|429851912|gb|ELA27071.1| DNA-directed RNA polymerase iii 130 kda polypeptide [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1451

 Score = 1205 bits (3117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1161 (53%), Positives = 801/1161 (68%), Gaps = 41/1161 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I++IVRAN  I S
Sbjct: 11   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVENEIKEIVRANRIIRS 70

Query: 73   GIDPSIFLRFKDVRIGQPSMTVD----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH 128
             ++ S +L F D+R+ +PS  VD        ++ P  CRL DMTYAAPI+V+I Y++   
Sbjct: 71   DVNSSFWLEFTDIRVEKPS-RVDFNDIRAQNEVTPMECRLRDMTYAAPIMVDIAYIR--- 126

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
             +K+ + + +V +GR+P+ML+S  C L G   AE++R+ ECPLDPGGYFII GTEKV+LI
Sbjct: 127  -DKSKIVRKNVPLGRLPVMLKSSICRLGGATNAEMSRMNECPLDPGGYFIINGTEKVILI 185

Query: 189  QEQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
            QEQLSKNRVI++ D+K N I ASVTSST   KSKT + ++K ++ L  N  V+ IPI+++
Sbjct: 186  QEQLSKNRVIVEADEKNNVITASVTSSTHERKSKTYVTLKKDRILLTANILVEGIPIVII 245

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +KA+G  SD E++Q+V G + +Y    L   EE   + +YTQ++ALEY+  +VK      
Sbjct: 246  LKALGGLSDYEIMQLVAGDNGKYQDEFLVQFEEATKVGVYTQQQALEYIGARVKMGKSRV 305

Query: 307  PPNDREGR-----AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
            P + +  R     A   L ++ +A+VP+   +F PK  YVA M RR++ A  N   +DD+
Sbjct: 306  PFSAQVRRNHVEEALDALANLIIAHVPIEGLDFYPKAVYVAFMTRRVLMAQSNLSLVDDR 365

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--I 419
            D+VGNKRLEL+GQL+SLLFEDLFK     V+ ++D +L K +R+   D    I   +  I
Sbjct: 366  DFVGNKRLELAGQLLSLLFEDLFKQFCGNVKSSIDKVLKKDNRAVPLDAVNMISNHANMI 425

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
              G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 426  GQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRAL 485

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGE 537
            QPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ EE P+    + L  GVE +   SG 
Sbjct: 486  QPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVEEEPVKRWVFTLDAGVEPIRNFSGG 545

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H   SF++  NG      R PK FA   R +RR G I  FVS+ +N     V+IA+D 
Sbjct: 546  EMHREGSFVIHINGTPFALTRYPKRFAGKFRTMRRRGWISPFVSIHINNHFNAVHIATDE 605

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP +I   G  ++K  H+K L  G  +FDDFL  G++EYLDVNEEN+ L+ALYE D
Sbjct: 606  GRICRPYIIVKNGKPKLKAEHLKLLQLGKATFDDFLTHGIVEYLDVNEENDTLVALYETD 665

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL
Sbjct: 666  VTMTTTHMEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLL 725

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYPQRP++ ++TI+LV YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGFGRC
Sbjct: 726  YTLVYPQRPMVISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRC 785

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
             V +KYTA  QKY N   +RI  P     G  +    H +      LDDDGLA  G  I 
Sbjct: 786  QVFRKYTAELQKYPNGRRERIGDPVNDENGRTKK---HEA------LDDDGLAIVGYKIN 836

Query: 838  PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
              +  I KE+PL+T GS      +  S +R +  +Y+  D     +D+V +   +   + 
Sbjct: 837  SGETMIKKETPLDT-GSTGIGMDRGPSEFRDSSISYRIAD--PAYIDKVMVSHTERETMV 893

Query: 898  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 957
            +K   R TRRPELGDKFSSRHGQKGV G IV QED PFS+ G+ PD+IMNPHGFPSRMTV
Sbjct: 894  VKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTV 953

Query: 958  GKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITG 1017
            GK++E L GKA V  GR  YG  FG+ +  +  +E +S  LV HGFS+ GKD   SGITG
Sbjct: 954  GKLLECLTGKASVLDGRKDYG--FGD-AFRSHPLEQMSAALVDHGFSWEGKDYFTSGITG 1010

Query: 1018 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1077
             PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCL
Sbjct: 1011 EPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCL 1070

Query: 1078 IAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            IAYGAS L+ ERLM+SSD  ++ +C+ CGL GY       G C TCK+   ++ M +PYA
Sbjct: 1071 IAYGASQLLLERLMISSDGTQLDICQQCGLFGY------KGYCHTCKSTREVTQMTMPYA 1124

Query: 1138 CKLLIQELQSMNIVPRLKLAE 1158
             KLL+QEL SMN+  RL+LA+
Sbjct: 1125 AKLLVQELISMNVGVRLQLAD 1145


>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
            206040]
          Length = 1157

 Score = 1204 bits (3116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1167 (52%), Positives = 806/1167 (69%), Gaps = 49/1167 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I++IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKEIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVSEKLN---PHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+ +P       S+  N   P  CRL DMTYAAPI V+I Y++    
Sbjct: 73   DVDSNFWLEFTDIRVDRPRRLDYNDSKSRNEVTPMECRLRDMTYAAPIFVDIAYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+ML+SC+C L G + +E+ ++ ECPLDPGGYFI+ GTEKV+LIQ
Sbjct: 129  DKQKIVRKNVPLGRMPVMLKSCKCRLSGANNSEMEKMNECPLDPGGYFIVNGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K N I+ASVTSST   KSKT + ++K K+ L  N  V+ IPI++++
Sbjct: 189  EQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTLKKDKIVLTHNILVEGIPIVIIL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    L + +E A   I+TQ +ALEY+  +VK    R  
Sbjct: 249  KALGGLSDYEIMQLVAGSDGRYQDEFLVNFDEAAKAGIFTQHQALEYIGSRVKMGSRRGQ 308

Query: 304  FGSPP---NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG+     N  EG     L ++ +A+VP+   +F PK  YVA+M RR++ A  +   +DD
Sbjct: 309  FGAQARRNNVEEG--LDALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDNKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK  + EV+ ++D  L K +R+   D    I    +S
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFLKKNNRAVPLDAVHMISNHANS 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I +G+ R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGLGINRAIQSGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P+    + L  GVE +   SG
Sbjct: 487  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVEEDPVKRWIFTLDVGVEPIRNFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK F    R +RR G I  FV +  N     ++IA+D
Sbjct: 547  AEMHREGSYIIHVNGTPFALTRYPKRFTHRFRTMRRRGWISPFVGIHTNSHFNAIHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K  H++ L  G  +FDDFL +G++EYLDVNEEN+ALI +YE 
Sbjct: 607  EGRICRPYIIVKNGKQKLKPEHLRLLQMGKVTFDDFLTKGIVEYLDVNEENDALITIYED 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA NQ  R+D+L
Sbjct: 667  QVTMSTTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRP-DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            C V +KYT   QKY N   +R+  P +    G  R    H +      LD DGLA  G+ 
Sbjct: 787  CQVFRKYTTELQKYPNGRRERVGDPVNEVENGVMRRIKKHEA------LDADGLAIVGQR 840

Query: 836  IKPNDVYINKESPLETRGSIMSPTG----QTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            I   +  + KE+PL+     M+ TG    +  S YR    +Y+  D     +D+V +   
Sbjct: 841  IHSGEAMVKKETPLD-----MTTTGIGLDRGPSEYRDTAVSYRIAD--PAYIDKVMISQT 893

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            +     IK   R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+CPD+IMNPHGF
Sbjct: 894  EKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGF 953

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTVGK++E L GKA +  GR  YG  FG+ +  +  V+ +SE LV +GFS+ GKD  
Sbjct: 954  PSRMTVGKLLECLTGKASIVHGRKDYG--FGD-AFRSHPVQQVSEVLVDNGFSWEGKDYF 1010

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             SGITG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GE
Sbjct: 1011 TSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGE 1070

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G CSTCK+  +++ 
Sbjct: 1071 MERDCLIAYGASQLLLERLMLSSDGTMIDICQQCGLFGY------KGYCSTCKSTRDVTK 1124

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAE 1158
            M++PYA KLL+QEL SMN+  RL+L +
Sbjct: 1125 MQMPYAAKLLVQELISMNVGVRLQLED 1151


>gi|407926681|gb|EKG19645.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1189

 Score = 1204 bits (3115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1162 (52%), Positives = 807/1162 (69%), Gaps = 53/1162 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DSFNYFV+  +++I+RAN  + S +D   
Sbjct: 52   KALTDPINTAEDKWNLLPAFLKVKGLVKQHIDSFNYFVDVQLKEILRANQYVYSDVDDKF 111

Query: 79   FLRFKDVRIGQP----SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            F R+ D+R+ +P       V G+   + P+ CRL DMTYAAPI+V++EY +G+      +
Sbjct: 112  FWRYTDIRVLKPCRVEEENVRGIQSTITPNECRLRDMTYAAPIVVDVEYKKGN----VKV 167

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            ++  + IGR+PIMLRS +C L+GK E+++ +LGEC +DPGGYFI +G EKV+L+QEQLSK
Sbjct: 168  KRKGIHIGRMPIMLRSNKCHLWGKSESQMGQLGECSIDPGGYFITRGQEKVILVQEQLSK 227

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG I ASV S T   KSK  + ++KG +YL  N F + IP+++  KAMG++
Sbjct: 228  NRVIVES-MKGIIQASVISFTVDRKSKGYVLLKKGLLYLKHNCFTEDIPVVIAFKAMGIQ 286

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLD---IYTQEKALEYLEGKVKRSTFGSPPND 310
            S+ E++ +V G D  Y      + E C N     I TQ +ALEY+  + ++     P  +
Sbjct: 287  SEHEILLLVAGDDSAYQDEFAVNFEACYNEKNERINTQHQALEYVGQRTRQ--LRKPIGN 344

Query: 311  REGR-----AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
            R+ R     A   L ++ +++VPV   NFRPK  Y+A M RR++ A+ +   +DD+DYVG
Sbjct: 345  RQARNLQQEAIDALSNMMMSHVPVVGMNFRPKALYIAYMTRRVLMAIHDPKMVDDRDYVG 404

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD--SITVGL 423
            NKRLEL+GQ+++LLFED FK+   + +  +D IL KP+R++ FD    I     SIT G+
Sbjct: 405  NKRLELAGQMMALLFEDSFKSFNYQFKAAIDKILKKPNRAAEFDAYDHIQTHGWSITAGM 464

Query: 424  ERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
            ER ++TGN+ +KRF+M R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPRALQPSQ
Sbjct: 465  ERAIATGNWSLKRFRMERAGITHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQ 524

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            +GMLC  DTPEGEACGLVKNLALMTH+TT+  E P+  + + LG ED++  SG EL++  
Sbjct: 525  FGMLCTSDTPEGEACGLVKNLALMTHITTEVPEDPVKRIVFILGAEDVQSASGTELYSDG 584

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP 603
            +++V  NG  L   R P+ F +  RK RR G+I EFVS+ +N   R V IA+D GR+CRP
Sbjct: 585  AYIVFVNGSPLALTREPRQFLNGFRKFRRMGRISEFVSIHINHHHRAVQIATDEGRICRP 644

Query: 604  LVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT 663
            L++ ++G SR+   +++ L  G   FDDF+  GL+EYLDVNEEN++ I +YE D     T
Sbjct: 645  LIVVERGKSRVSARYLRALQKGTMEFDDFISRGLVEYLDVNEENDSNICIYEKDLKEHHT 704

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYP
Sbjct: 705  HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYP 764

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            Q+P++ TRTIEL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NK+S DRGFGRC V KK 
Sbjct: 765  QQPMVKTRTIELIKYDKLPAGQNATVAVMSYSGYDIEDALVINKASCDRGFGRCQVFKKA 824

Query: 784  TAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYI 843
            T   + YAN + D+I  P+R   G   +   H       + + DG+A  G +++ +DVY+
Sbjct: 825  TTTLKSYANGSQDKITGPERNADGTP-VNPRHKK-----VGESDGIAEVGMLLEKDDVYL 878

Query: 844  NKESPLETRGSIMSPTG-------QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            NK  P++T     +P G       +  + +R    +YK PD     VD+V L  +++   
Sbjct: 879  NKFVPVQT-----NPVGLEEQQRRKQPTEFRPTPMSYKLPD--PAYVDKVLLTENESNTP 931

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK   R TRRPELGDKFSSRHGQKGV G I +Q D PF+++GICPD+IMNPHGFPSRMT
Sbjct: 932  VIKIQTRQTRRPELGDKFSSRHGQKGVVGIIAEQIDMPFNDQGICPDIIMNPHGFPSRMT 991

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKM+ELL GKAGV  G   YG+ FG         E +S+ L++ GFSY+GKDM+ SGIT
Sbjct: 992  VGKMLELLSGKAGVMNGELQYGTCFG-----GSKAEDMSQILLEAGFSYSGKDMLTSGIT 1046

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  L AY+F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1047 GECLPAYVFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDC 1106

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LIAYGAS L+ ERLM+SSD  E  VC  CG++GY       G C +C++   +  M +PY
Sbjct: 1107 LIAYGASQLLLERLMLSSDAHECDVCERCGMMGY------QGWCQSCRSSKGVVRMTIPY 1160

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLLIQEL SMN+   LKL +
Sbjct: 1161 AAKLLIQELLSMNVKASLKLGD 1182


>gi|302848540|ref|XP_002955802.1| hypothetical protein VOLCADRAFT_66175 [Volvox carteri f. nagariensis]
 gi|300258995|gb|EFJ43227.1| hypothetical protein VOLCADRAFT_66175 [Volvox carteri f. nagariensis]
          Length = 1154

 Score = 1204 bits (3114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1122 (56%), Positives = 786/1122 (70%), Gaps = 67/1122 (5%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D  +L  P+K+V DKF LLP FLKVRGLVKQHLDSFN+ +N+ +RKIV AN+++    DP
Sbjct: 23   DPTRLTEPIKAVQDKFALLPAFLKVRGLVKQHLDSFNFLLNSELRKIVAANEKVTCDTDP 82

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH--TEKTTM 134
            + +L++ ++ +G PSM  D V     P  CRL D TY+API V+IEY +G     ++   
Sbjct: 83   NFYLKYTNIYVGSPSMDEDMVQVGTTPQQCRLRDATYSAPITVDIEYTRGKEIVVKRGRG 142

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
                V IGR+P+MLR  RCVLYGK+EA+LA+LGECPLDPGGYFI++GTEKV+LIQEQLSK
Sbjct: 143  GVGAVCIGRMPLMLRCDRCVLYGKNEAQLAQLGECPLDPGGYFIVRGTEKVILIQEQLSK 202

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NR+I+DTD  G + ASVTSST   KSKT I   KGK+YL  N F   + IMVV+KAMG E
Sbjct: 203  NRIIVDTDSHGEVIASVTSSTHERKSKTNIVFSKGKIYLKHNAFQDDVNIMVVLKAMGCE 262

Query: 255  SDQEVVQMV-----------GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST 303
            SDQEVVQ V           GRD    A          +L ++TQ +AL+YL  ++++  
Sbjct: 263  SDQEVVQAVVGGGFGVRAASGRDGGLDA---------KSLGVFTQMQALDYLGTRLRKRR 313

Query: 304  FGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
                   +   A  +L +V L +VPV    F  K  YVAVM+RRM+ A+L+   +DD+DY
Sbjct: 314  -----KSKVDEARDVLANVVLCHVPVPRYQFAHKIAYVAVMMRRMLYAVLDPACIDDRDY 368

Query: 364  VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGL 423
             GNKRLEL+G L+SLLFEDLFK + S++++  D +LSK +R+++FD+++ I  D+IT GL
Sbjct: 369  YGNKRLELAGALMSLLFEDLFKRLNSDIKRQADSVLSKANRATQFDVAKAIRTDTITYGL 428

Query: 424  ERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
            E  LS+GN+ +KRF+M RKG+TQVL+RLSFI  +G MTR++ QFEK+RKVSGPRAL PSQ
Sbjct: 429  ESALSSGNWIIKRFRMERKGVTQVLSRLSFIAAMGMMTRMTSQFEKTRKVSGPRALHPSQ 488

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            WGMLCP DTPEGE+CGLVKNLALMTHVTTDEEE  +  L   LG E +  L+  E+H   
Sbjct: 489  WGMLCPADTPEGESCGLVKNLALMTHVTTDEEEVSICRLLVMLGTEPITSLAPAEMHGQG 548

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP 603
              LV  NG ++G HRRP      +R+LRRAG +GEFV V +  +Q   Y+++DGGRVCRP
Sbjct: 549  GALVFLNGNLVGVHRRPHRLVKEVRELRRAGHLGEFVHVHL--QQDACYVSADGGRVCRP 606

Query: 604  LVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT 663
            L+I D G+ R+++ H+ +L  G  +F DFLR GL+EYLDVNEEN +LIALYE D    TT
Sbjct: 607  LIICDAGVPRVRQEHITKLRSGEWTFPDFLRRGLVEYLDVNEENVSLIALYEKDCNKMTT 666

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H+EIEPFTI+GV++GLIP+PHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYP
Sbjct: 667  HLEIEPFTIMGVVSGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLSRMDTLLYLLVYP 726

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            QRPLLTTRTIELVG+DKLGAGQNA+VAVMSYSGYDIEDAIVMNK SLDRGFGRCIV+KKY
Sbjct: 727  QRPLLTTRTIELVGFDKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKY 786

Query: 784  TAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYI 843
                +KYAN + DRI+ P    PG + +Q          +LD DG+A+ G+ I P DVYI
Sbjct: 787  GCSLRKYANRSHDRIVAP-LPAPGQKSVQS------RFRLLDRDGIASVGDYILPGDVYI 839

Query: 844  NKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL--CSDKNGD------ 895
            N + P  TR  + + +   DS YR+         GE C     AL  CS   G       
Sbjct: 840  NMQRPSNTRDPLPA-SNMPDSFYRA---------GEGCTRAGQALGFCSSVGGGGREGAN 889

Query: 896  ----LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
                  ++ LIRHTRRPELGDKFSSRHGQKGV G IV+QEDFPFSERG+CPDLIMNPHGF
Sbjct: 890  KHCVWGMRVLIRHTRRPELGDKFSSRHGQKGVVGNIVRQEDFPFSERGVCPDLIMNPHGF 949

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTV  +     G  GV      +GS         + +  +   L  H          
Sbjct: 950  PSRMTVRGVSGGGVGGQGVCGFWGRWGS-----RRMGENLSPLPHHL--HPLMVRRPSPP 1002

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             S   G PL+AYIFMGP+YYQKLKHMVLDKMHAR  GPRV+LTRQPTEGR+R+GGLR+GE
Sbjct: 1003 PSVSPGEPLEAYIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRLGE 1062

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQ-VC-RVCGLLGYY 1111
            MERDCLIAYGASML+ ERLM+SSD FEV+ VC  VC  +  Y
Sbjct: 1063 MERDCLIAYGASMLLLERLMISSDQFEVRCVCVHVCMYVCMY 1104


>gi|310798473|gb|EFQ33366.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1151

 Score = 1203 bits (3113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1161 (53%), Positives = 801/1161 (68%), Gaps = 41/1161 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I++IVRAN  I S
Sbjct: 11   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVENEIKEIVRANRIIRS 70

Query: 73   GIDPSIFLRFKDVRIGQPSMTVD----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH 128
             ++ S +L F D+R+ +PS  VD        ++ P  CRL DMTYAAPI+V+I Y++   
Sbjct: 71   DVNSSFWLEFTDIRVERPS-RVDFNDIRAQNEVTPMECRLRDMTYAAPIMVDIAYIR--- 126

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
             +K+ + + +V +GR+P+ML+S  C L G + AE++R+ ECPLDPGGYFII GTEKV+LI
Sbjct: 127  -DKSKIVRKNVPLGRLPVMLKSSICRLGGANNAEMSRMNECPLDPGGYFIINGTEKVILI 185

Query: 189  QEQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
            QEQLSKNRVI++ D+K + I ASVTSST   KSKT + ++K ++ L  N  V+ IPI+++
Sbjct: 186  QEQLSKNRVIVEADEKNSVITASVTSSTHERKSKTYVTLKKDRILLTANILVEGIPIVII 245

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +KA+G  +D E++Q+V G + +Y    L   EE     +YTQ++ALEY+  +VK      
Sbjct: 246  LKALGGLTDYEIMQLVAGDNGKYQDEFLVQFEEATKAGVYTQQQALEYIGARVKMGKSRV 305

Query: 307  PPNDREGR-----AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
            P   +  R     A   L ++ +A+VP+   +F PK  YVA M RR++ A  +   +DD+
Sbjct: 306  PFAAQVRRNHVEEALDALANLIIAHVPIEGLDFYPKAIYVAFMTRRVLMAQNDPSLVDDR 365

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--I 419
            D+VGNKRLEL+GQL+SLLFEDLFK     V+ ++D +L K +R+   D    I   +  I
Sbjct: 366  DFVGNKRLELAGQLLSLLFEDLFKQFCGNVKSSIDKVLKKDNRAVPLDAVNMISNHANMI 425

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
              G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 426  GQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRAL 485

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGE 537
            QPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ EE P+    + L  GVE +   SG 
Sbjct: 486  QPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVEEAPVKRWVFTLDAGVEPIRNFSGG 545

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H   S+++  NG      R PK FA   R +RR G I  FVS+ +N     V+IA+D 
Sbjct: 546  EMHRETSYVIHINGTPFALTRYPKRFAGKFRTMRRRGWISPFVSIHINNHFNAVHIATDE 605

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP +I   G  ++KE H++ L  G  +FDDFL  G++EYLDVNEEN+ L+ALYE D
Sbjct: 606  GRICRPYIIVRNGKPKLKEEHLRLLQLGRATFDDFLTHGIVEYLDVNEENDTLVALYEKD 665

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             TP TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL
Sbjct: 666  VTPLTTHMEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLL 725

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYPQRP++ ++TI+LV YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGFGRC
Sbjct: 726  YTLVYPQRPMVISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRC 785

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
             V +KYTA  QKY N   +RI  P       E  +   H       LDDDGLA  G  + 
Sbjct: 786  QVFRKYTAELQKYPNGRRERIGDP----VNDENGRTTKHE-----ALDDDGLAIVGYKVN 836

Query: 838  PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
              +V I KE+PL+T GS      +  S +R +  +Y+  D     +D+V +   +   + 
Sbjct: 837  SGEVMIKKETPLDT-GSTGIGMDRGPSEFRDSSISYRIAD--PAYIDKVMVSHTERETMV 893

Query: 898  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 957
            +K   R TRRPELGDKFSSRHGQKGV G IV QED PFS+ G+ PD+IMNPHGFPSRMTV
Sbjct: 894  VKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTV 953

Query: 958  GKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITG 1017
            GK++E L GKA V  GR  YG  FG+ +  +  +E +S  LV HGFS+ GKD   SGITG
Sbjct: 954  GKLLECLTGKASVLDGRKDYG--FGD-AFRSHPLEQMSAALVDHGFSWEGKDYFTSGITG 1010

Query: 1018 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1077
             PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCL
Sbjct: 1011 EPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCL 1070

Query: 1078 IAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            IAYGAS L+ ERLM+SSD  ++ +C+ CGL GY       G C TCK+   ++ M +PYA
Sbjct: 1071 IAYGASQLLLERLMISSDGTQIDICQQCGLFGY------KGYCHTCKSTREVTQMTMPYA 1124

Query: 1138 CKLLIQELQSMNIVPRLKLAE 1158
             KLL+QEL SMN+  RL+L +
Sbjct: 1125 AKLLVQELISMNVGVRLQLED 1145


>gi|380493500|emb|CCF33834.1| DNA-directed RNA polymerase III subunit RPC2 [Colletotrichum
            higginsianum]
          Length = 1151

 Score = 1203 bits (3112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1161 (53%), Positives = 802/1161 (69%), Gaps = 41/1161 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I++IVRAN  I S
Sbjct: 11   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVENEIKEIVRANRIIRS 70

Query: 73   GIDPSIFLRFKDVRIGQPSMTVD----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH 128
             ++ S +L F D+R+ +PS  VD        +++P  CRL DMTYAAPI+V+I Y++   
Sbjct: 71   DVNSSFWLEFTDIRVERPS-RVDFNDIRAQNEVSPMECRLRDMTYAAPIMVDIAYIR--- 126

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
             +K+ + + +V +GR+P+ML+S  C L G + AE++R+ ECPLDPGGYFII GTEKV+LI
Sbjct: 127  -DKSKIVRKNVPLGRLPVMLKSSICRLGGANNAEMSRMNECPLDPGGYFIINGTEKVILI 185

Query: 189  QEQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
            QEQLSKNRVI++ D+K + I ASVTSST   KSKT + ++K ++ L  N  V+ IPI+++
Sbjct: 186  QEQLSKNRVIVEADEKNSVITASVTSSTHERKSKTYVTLKKDRILLTANILVEGIPIVII 245

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +KA+G  +D E++Q+V G + +Y    L   EE   + +YTQ++ALEY+  +VK      
Sbjct: 246  LKALGGLTDYEIMQLVAGDNGKYQDEFLVQFEEATKVGVYTQQQALEYIGARVKMGKSRV 305

Query: 307  PPNDREGR-----AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
            P   +  R     A   L ++ +A+VP+   +F PK  YVA M RR++ A  +   +DD+
Sbjct: 306  PFAAQVRRNHVEEALDALANLIIAHVPIEGLDFYPKAVYVAFMTRRVLMAQQDPSLVDDR 365

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--I 419
            D+VGNKRLEL+GQL+SLLFEDLFK     V+ ++D +L K +R+   D    I   +  I
Sbjct: 366  DFVGNKRLELAGQLLSLLFEDLFKQFCGNVKSSIDKVLKKDNRAVPLDAVNMISNHANMI 425

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
              G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 426  GQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRAL 485

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGE 537
            QPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ EE P+    + L  GVE +   SG 
Sbjct: 486  QPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVEEAPVKRWVFTLDAGVEPIRNFSGG 545

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H   S+++  NG      R PK FA   R +RR G I  FVS+ +N     V+IA+D 
Sbjct: 546  EMHRETSYVIHINGTPFALTRYPKRFAGKFRTMRRRGWISPFVSIHINNHFNAVHIATDE 605

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP +I   G  ++K  H++ L  G  +FDDFL  G++EYLDVNEEN+ L+ALYE D
Sbjct: 606  GRICRPYIIVKNGKPKLKAEHLRLLQLGKATFDDFLTHGIVEYLDVNEENDTLVALYEKD 665

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             TP TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL
Sbjct: 666  VTPLTTHMEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLL 725

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYPQRP++ ++TI+LV YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGFGRC
Sbjct: 726  YTLVYPQRPMVISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRC 785

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
             V +KYTA  QKY N   +RI  P       E  +   H       LDDDGLA  G  + 
Sbjct: 786  QVFRKYTAELQKYPNGRRERIGDP----VNDENGRTTKHE-----ALDDDGLAIVGYKVN 836

Query: 838  PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
              +V I KE+PL+T GS      +  S +R +  +Y+  D     +D+V +   +   + 
Sbjct: 837  SGEVMIKKETPLDT-GSTGIGMDRGPSEFRDSSISYRIAD--PAYIDKVMVSHTERETMV 893

Query: 898  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 957
            +K   R TRRPELGDKFSSRHGQKGV G IV QED PFS+ G+ PD+IMNPHGFPSRMTV
Sbjct: 894  VKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTV 953

Query: 958  GKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITG 1017
            GK++E L GKA V  GR  YG  FG+ +  +  +E +S  LV HGFS+ GKD   SGITG
Sbjct: 954  GKLLECLTGKASVLDGRKDYG--FGD-AFRSHPLEQMSAALVDHGFSWEGKDYFTSGITG 1010

Query: 1018 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1077
             PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCL
Sbjct: 1011 EPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCL 1070

Query: 1078 IAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            IAYGAS L+ ERLM+SSD  ++ +C+ CGL GY       G C TCK+   ++ M +PYA
Sbjct: 1071 IAYGASQLLLERLMISSDGTQIDICQQCGLFGY------KGYCHTCKSTREVTQMTMPYA 1124

Query: 1138 CKLLIQELQSMNIVPRLKLAE 1158
             KLL+QEL SMN+  RL+L +
Sbjct: 1125 AKLLVQELISMNVGVRLQLED 1145


>gi|346972359|gb|EGY15811.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium dahliae
            VdLs.17]
          Length = 1160

 Score = 1202 bits (3109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1162 (52%), Positives = 800/1162 (68%), Gaps = 37/1162 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV+  I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTQEDKFQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             ++ S +L F D+R+  PS           ++ P  CRL DMTY API V+I Y++    
Sbjct: 73   DVNSSFWLEFTDIRVESPSRLDFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K+ + + +V +GR+P+ML+S +C L G    E+A + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DKSKIVRRNVPLGRLPVMLKSAKCRLNGASNKEMALMNECPLDPGGYFIINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K NI  ASVTSST   K+KT I ++K ++ L+ N  V+  PI++V+
Sbjct: 189  EQLSKNRVIVEADEKNNIITASVTSSTHERKTKTNITLKKDRISLVHNVLVEPAPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
            KA+G  SD E++Q+V G D RY      + +E     +YTQ++ALE++  +VK    G  
Sbjct: 249  KALGGLSDLEIMQLVAGDDGRYQDEFTVNFDEATKQGVYTQQQALEWIGSRVKMGGRGRF 308

Query: 308  PNDREGRAFSI------LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
              + + R  +I      L ++ +A++PV   +F PK  YVA M RR++ A  N   +DD+
Sbjct: 309  QPNSQARKNNIEEGMDALSNLIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDR 368

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSI 419
            D+VGNKRLEL+GQL+SLLFEDLFK    +V+ ++D +L K +R+   D    I    ++I
Sbjct: 369  DFVGNKRLELAGQLLSLLFEDLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMISNHANNI 428

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
              G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 429  GQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRAL 488

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGE 537
            QPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P+    + +   VE +   SG 
Sbjct: 489  QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKRWVFTVDDNVEPIRNFSGS 548

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H   S+++  NG      + PK F +  R +RR G I  FV V +N     V+IA+D 
Sbjct: 549  EMHREGSYIIHINGTPFALTKFPKRFTNRFRTMRRRGWISPFVGVHINNHFNAVHIATDE 608

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP +I   G  ++K  H+K L  G  +FDDFL  G++EYLDVNEEN+ L+ALYE D
Sbjct: 609  GRICRPYIIVKNGKPKLKAEHLKLLQLGKATFDDFLTNGVVEYLDVNEENDTLVALYETD 668

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
                TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL
Sbjct: 669  VNQSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLL 728

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYPQRP++ ++TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGFGRC
Sbjct: 729  YTLVYPQRPMVISKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRC 788

Query: 778  IVVKKYTAINQKYANSTSDRILRPD-RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
             V +KY+A  QKY N   +RI  P      G  R ++  H+      LD DGLA  G  +
Sbjct: 789  QVFRKYSAELQKYPNGKRERIGDPQYEEMEGKPRRRIAKHA-----ALDPDGLAMVGGQV 843

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +  +  + KE+PL+T GS      +  S +R +  +Y+ PD     +D+V +   +  ++
Sbjct: 844  RAGEAMVKKETPLDT-GSTGIGNDRGPSEFRDSSISYRIPD--PAYIDKVMISQSEKDNM 900

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK   R TRRPELGDKFSSRHGQKGV G IV+QED PFS++G+ PD+IMNPHGFPSRMT
Sbjct: 901  VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSRMT 960

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGK++E L GKA V  GR  YG  FG+ +  +  ++ +SE LV HGFS+ GKD   SGIT
Sbjct: 961  VGKLLECLTGKASVLDGRPDYG--FGD-AFRSHPLKQMSEALVDHGFSWEGKDYFTSGIT 1017

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R GGLR+GEMERDC
Sbjct: 1018 GEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEMERDC 1077

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LIAYGAS L+ ERLM+SSD  E+ +C+ CGL GY       G C TC++   ++ M +PY
Sbjct: 1078 LIAYGASQLLLERLMISSDGTEIDICQQCGLFGY------KGYCHTCRSTKEVTKMTMPY 1131

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL+QEL SMN+  RL++ +
Sbjct: 1132 AAKLLVQELISMNVGVRLQMED 1153


>gi|322710723|gb|EFZ02297.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
            anisopliae ARSEF 23]
          Length = 1157

 Score = 1202 bits (3109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1167 (52%), Positives = 812/1167 (69%), Gaps = 49/1167 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  PV +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPVNTRDDKFQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVSE---KLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+ +P       ++   ++ P  CRL DMTYAAPI+V+I Y++    
Sbjct: 73   DVDSNFWLEFTDIRVDRPRRQDHNDAKSRTEVTPMECRLRDMTYAAPIVVDIAYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+ML+S RC L G + A++  + ECPLDPGGYF+I GTEKV+LIQ
Sbjct: 129  DKQRIIRRNVPLGRMPVMLKSSRCRLSGANNAQMEAMNECPLDPGGYFVINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K NI +ASVTSST   KSKT + ++K ++ +  N  V+ IPI++++
Sbjct: 189  EQLSKNRVIVEADEKNNIISASVTSSTHERKSKTYVTLKKDRIVMTHNVLVEGIPIVIIL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    + + +E     ++TQ +ALEY+  +VK    ++ 
Sbjct: 249  KALGGLSDYEIMQLVAGSDGRYQDEFVINFDEATRAGVFTQHQALEYIGARVKMGSRKAM 308

Query: 304  FGSPPNDREG---RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG  P  R          L ++ +A+VP+   +F PK  YVA+M RR++ A  +   +DD
Sbjct: 309  FG--PQVRRNNVEEGLDALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDSKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK  + EV+ ++D  L K +R+   D    I    ++
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFLKKNNRAVPLDAVHMISNHANN 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I +G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE +   SG
Sbjct: 487  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVKRWIFTLDTGVEPIRNFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK FA   R +RR G I  FVS+ +N     V+IA+D
Sbjct: 547  AEMHREGSWVIHVNGTPFALTRYPKRFASRFRTMRRRGWISPFVSINLNSHFNAVHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  +++  H+K L  G  +FDDFL +G++EYLDVNEE +ALI LYE 
Sbjct: 607  EGRICRPYIIVKNGKQKLRHEHLKLLHLGKVTFDDFLTKGIVEYLDVNEEQDALITLYEN 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+L
Sbjct: 667  QITQSTTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ T+TI+LV YDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVITKTIQLVHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRP-DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            C V +KYT   QKY N   +RI  P ++   G  R +V + +      LDDDGLA  G  
Sbjct: 787  CQVFRKYTTELQKYPNGRRERIGDPVNQVNGGTTRREVKYEA------LDDDGLATVGYR 840

Query: 836  IKPNDVYINKESPLETRGSIMSPTG----QTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            +K  +V + KE+PL+     ++ TG    +  S YR +  +Y+ PD     +D+V +   
Sbjct: 841  VKSGEVMVKKETPLD-----LTTTGIGLDRGPSEYRDSAISYRIPD--PAYIDKVMISQT 893

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            +     IK   R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+CPD+IMNPHGF
Sbjct: 894  EKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGF 953

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTVGK++E L GKA +  GR  YG  FG+ +  +  V+ +S+ L+ +GFS+ GKD  
Sbjct: 954  PSRMTVGKLLECLTGKASIIDGRPDYG--FGD-AFRSHPVKDMSQVLLDYGFSWEGKDYF 1010

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             SG+TG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GE
Sbjct: 1011 TSGLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGE 1070

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G C+TCK+   ++ 
Sbjct: 1071 MERDCLIAYGASQLLLERLMLSSDGVTLDICQQCGLFGY------KGYCNTCKSTRQVTQ 1124

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAE 1158
            M++PYA KLL+QEL SMN+  RL+L +
Sbjct: 1125 MQMPYAAKLLVQELISMNVGVRLQLED 1151


>gi|330934625|ref|XP_003304626.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
 gi|311318641|gb|EFQ87258.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
          Length = 1214

 Score = 1202 bits (3109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1142 (53%), Positives = 789/1142 (69%), Gaps = 46/1142 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK +GLVKQH+DS+N+FV+  ++KI++AN  + S  DP  
Sbjct: 95   KSLTDPINTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKANRFVRSDFDPKF 154

Query: 79   FLRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
             L + D+R+  P+   +   E     + P+ CRL DMTYAAPI+V+I Y +G+   K T 
Sbjct: 155  LLEYTDIRVLSPNRQEEDDLEHHRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRT- 213

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
                + IGR+PIML+S +CVL  K + E+A + ECPLDPGGYFI +G EKV+L+QEQL+K
Sbjct: 214  ---GIKIGRMPIMLKSNKCVLADKSDREMAVMDECPLDPGGYFITRGQEKVILVQEQLNK 270

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG + ASVTSST   ++KT +  +KG MYL  N   ++IPI+ VMKA+G+ 
Sbjct: 271  NRVIVES-AKGIMQASVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVA 329

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPN-D 310
            SD+E++ M+ G D  Y      + E CA   I+TQE+ALEY+  +V+  +   G+  N +
Sbjct: 330  SDKEILVMIAGEDSAYQDNFSTNFEACAKEKIFTQERALEYIGHRVRLVKKPLGTSRNRN 389

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
                A   L +V L +VPV   N+RPK  YVA+M RR++ AM N   +DD+DYVGNKRLE
Sbjct: 390  YHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLE 449

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIV-RDSITVGLERTLS 428
            LSGQ++SLLFED FK    + + ++D +L KP R+  FD  S F V ++ IT+G+ER ++
Sbjct: 450  LSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPIRAQEFDAFSHFSVHKNHITMGVERAIA 509

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 510  TGNWSLKRFKMDRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 569

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              DTPEGEACGLVKNLALMTH+TT++++ P+  + + LG +D+  L+GE++H    + + 
Sbjct: 570  TSDTPEGEACGLVKNLALMTHITTEDDDDPVRKIVFMLGAQDICSLTGEDIHAEGVYSLC 629

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +    RPK F +  R+LRR G++ EF S+ ++     V+IA+D GR+CRP++I +
Sbjct: 630  LNGTPIAITDRPKQFLNSFRQLRRMGRVSEFTSIHIDHDHCEVHIATDEGRICRPMIIVE 689

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
               S++   ++K L  G   F+DFL  GL+EYLD NEEN+  IAL E D    TTH+EIE
Sbjct: 690  NQRSKVTSRYLKALRKGTLDFEDFLTRGLVEYLDTNEENDTNIALKETDINQHTTHLEIE 749

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++
Sbjct: 750  PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMV 809

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL  YDKL AGQNATVAVMSYSGYDIEDA+++NK+S DRGFGRC V+KK+    +
Sbjct: 810  KTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLK 869

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
             YAN TSDRI        GA       H       +  DG+A  G  I+  D Y+ K  P
Sbjct: 870  TYANGTSDRI------NAGALDTDNKSHQ-----AIGKDGIAQVGARIEAGDAYLLKSIP 918

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            L+T G    P   T   Y+   + YK PD     +D+  +  ++ G   IK L R TRRP
Sbjct: 919  LDTAG----PATNT---YKDKPEKYKNPD--FSYIDKACVTENEAGVTLIKLLFRQTRRP 969

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKG  G IVQQED PF+++GICPD+IMNPHGFPSRMTVGKM+ELL GKA
Sbjct: 970  ELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKA 1029

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+AFG       TVE +S+ LV  GFSY GKD + SGITG   Q Y F GP
Sbjct: 1030 GVLNGTLEYGTAFG-----GSTVEDMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFGP 1084

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV DKMH+R  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGAS L+ E
Sbjct: 1085 IYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLE 1144

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD   V VC  CG +GY      +G C  C++   +  + +PYA KLLIQEL SM
Sbjct: 1145 RLMLSSDAHTVDVCEKCGQMGY------SGYCKLCESEKAVRKITMPYAAKLLIQELGSM 1198

Query: 1149 NI 1150
            N+
Sbjct: 1199 NV 1200


>gi|308497698|ref|XP_003111036.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
 gi|308242916|gb|EFO86868.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
          Length = 1154

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1149 (51%), Positives = 799/1149 (69%), Gaps = 46/1149 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            DK+ L+P FLKVRGLVKQHL SF++FVN  IR I+++N +I S  +P+ +L++ D+R+G 
Sbjct: 27   DKWLLVPAFLKVRGLVKQHLVSFDHFVNIEIRNIMQSNQKITSDANPNFYLKYLDIRVGN 86

Query: 90   PSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            PS    ++   +K+ P  CRL DMTY+API V+IEY +G+      + K D++IGR+PIM
Sbjct: 87   PSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQR----VFKKDLIIGRMPIM 142

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            LRS +C+L    E ELAR+ ECP DPGGYF++KG+EKV+LIQEQLSKNR+++  +    +
Sbjct: 143  LRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKEL 202

Query: 208  NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP 267
               V SST   KSKT + M+KGK  +  NQ    +P+ ++ KAMG+ESD ++V  +G + 
Sbjct: 203  QCEVLSSTSERKSKTYVTMKKGKYSVRHNQLTDDVPVSIIFKAMGVESDYDIVSTIGHEE 262

Query: 268  RYSALLLPSIEECANLDIYTQEKALEYLEGKVKR---STFGSPPND--------REGRAF 316
            +Y +    ++EEC N  +YTQ++AL Y+  KVK    + FGS P          +E  A 
Sbjct: 263  KYVSAFAQTLEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAV 322

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              L +  + ++   + NF+ K  Y+ +M RR+++  L ++ +DD+D+ GNKRLEL+G L+
Sbjct: 323  DFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENELDDRDFYGNKRLELAGSLL 382

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            +LLFED+FK   SE+++  D  L K + ++  D+ + + +D IT  +   +STGN+ +KR
Sbjct: 383  ALLFEDVFKRFNSELKRIADNALMK-TMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKR 441

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            F+M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 442  FRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 501

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLAL++H+TTD +E P++ L    GVEDL  +    ++ P + L+  NG+++G 
Sbjct: 502  ACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGT 561

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
               P+     +R LRR+G + EFVSV  +   R V+I+SDGGR+CRP +I   G   + +
Sbjct: 562  AVDPERVVRAVRDLRRSGLLSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKNGKPMLTQ 621

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             H+++L +G R F+DF+ +G++EYLDVNE N+ALIA+YE +  P+TTH+EIEPFT+LGV 
Sbjct: 622  DHVQQLKEGKRIFEDFVDDGIVEYLDVNEMNDALIAVYEKEIGPETTHLEIEPFTLLGVC 681

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQAMG IA+NQ  R+DS++YLL YPQRPL+ ++TIEL 
Sbjct: 682  AGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELT 741

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             ++KL AG N  +AVMSYSGYDIEDA+V+NK+SLDRG+GRC+V K      +KY N T D
Sbjct: 742  NFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTVRKYPNQTFD 801

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            R+L P    P   R+ +  H N     LD +G+   G  I P    INK  P+ +  S  
Sbjct: 802  RLLGP-ALDPNT-RLPISKHKN-----LDQEGIVFAGARILPKQTIINKHMPVVSGESGP 854

Query: 857  SPTGQTDS--------RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             P+   ++         Y+    +YK P       +RV L  +++    IK L+R TRRP
Sbjct: 855  GPSASANTIGIAGRQVDYKDVSISYKTP--TPSYAERVLLTYNEDEAHLIKVLLRQTRRP 912

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGVCG I QQED PF++ G+ PD+IMNPHG+PSRMTVGK++ELL GKA
Sbjct: 913  ELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKA 972

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G +HYG+AFG      D V+ + E L   G++Y GKDM+ SGITG  L AYI+ GP
Sbjct: 973  GVMNGTYHYGTAFG-----GDQVKDVCEELAARGYNYMGKDMLTSGITGQSLSAYIYFGP 1027

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMVLDKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLIAYGASML+ E
Sbjct: 1028 IYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIE 1087

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLMVSSD F+V VC  CG++G        G C  C++  +++++K+PYACKLL QELQSM
Sbjct: 1088 RLMVSSDEFKVDVCTGCGVIG------SKGWCQKCRSSKSMANIKIPYACKLLFQELQSM 1141

Query: 1149 NIVPRLKLA 1157
            NIVPRL LA
Sbjct: 1142 NIVPRLDLA 1150


>gi|302927105|ref|XP_003054428.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735369|gb|EEU48715.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1156

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1164 (52%), Positives = 801/1164 (68%), Gaps = 44/1164 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMT--VDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+ +P      D  S   + P  CRL DMTYAAPILV+I+Y++    
Sbjct: 73   DVDSNFWLEFTDIRVDRPRRQDWQDAKSHTDVTPMECRLRDMTYAAPILVDIQYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+ML+S +C L G    ++  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DKQRIVRKNVPLGRMPVMLKSSKCRLGGATNTQMEEMNECPLDPGGYFIIGGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K N I+ASVTSST   KSKT + ++K ++ L  N  V+ IPI++V+
Sbjct: 189  EQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTLKKDRILLTHNVLVEGIPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G +SD E++++V G D RY    L + +E     I+TQ +ALEY+  +VK    R  
Sbjct: 249  KALGGKSDMEIMELVAGSDGRYQDEFLVNFDEATKAGIFTQHQALEYIGARVKMGSRRGQ 308

Query: 304  FGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG  P  R          L ++ +A+VP+   +F PK  YVA+M R+++ A  N   +DD
Sbjct: 309  FG--PQVRRNHVEEGLDALANLVIAHVPIEELDFYPKAIYVAMMTRKVLMAAHNPKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK    EV+ ++D  L K +R+   D    I    ++
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKRFTVEVKMSIDKFLKKNNRAVPLDAVHMISNHANT 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I +G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGIGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG--VEDLELLSG 536
            LQPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ EEGP+      +   VE +E  SG
Sbjct: 487  LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVEEGPVKETILTIDKEVEAIEKFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              +H   S+++  NG      R PK FA   R LRR G I  FV + +N     ++IA+D
Sbjct: 547  SMMHREGSYVIHVNGTPFALTRNPKRFAQRFRTLRRRGGISPFVGININTHFNAIHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K  H++ L  G  +FDDFLR+G++EYLDVNEEN+ALI +YE 
Sbjct: 607  EGRICRPYIIVKNGQQKLKPEHLRLLQLGKVTFDDFLRQGVVEYLDVNEENDALITIYED 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+L
Sbjct: 667  QVTQSTTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ ++TI+L+GYDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C V +KYT   QKY N   +RI  P +   G  + ++  H       LDDDGLA  G  I
Sbjct: 787  CQVFRKYTTELQKYPNGRRERIGDP-QNEEGKVKQRIKKHEG-----LDDDGLAIVGYRI 840

Query: 837  KPNDVYINKESPLE--TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNG 894
               +  I KE+PL+  T G  M    +  S YR +  +Y+  D     +D+V +   +  
Sbjct: 841  HNGEAMIKKETPLDQTTTGIGMD---RGPSEYRDSSVSYRIAD--PAYIDKVMVSQTEKD 895

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
               IK   R TRRPELGDKFSSRHGQKGV G IV QED PFS++G+ PD+IMNPHGFPSR
Sbjct: 896  TTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDKGLTPDIIMNPHGFPSR 955

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MTVGK++E L GKA +  GR  YG  FG+ +  +  +E +S+ LV HGFS+ GKD   SG
Sbjct: 956  MTVGKLLECLTGKASIIHGRPDYG--FGD-AFRSHPLEEMSKVLVDHGFSWEGKDYFTSG 1012

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
            +TG PL+AYIF GPIYYQ+LKHMV DKMH+R  GP+ +LTRQPTEGR+R GGLR+GEMER
Sbjct: 1013 VTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPKAILTRQPTEGRSREGGLRLGEMER 1072

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            DCLIAYGAS L+ ERLM+SSD  E+ +C+ CGL GY       G C TCK+   ++ M +
Sbjct: 1073 DCLIAYGASQLLLERLMISSDGTEIDICQQCGLFGY------KGYCHTCKSTREVTKMTM 1126

Query: 1135 PYACKLLIQELQSMNIVPRLKLAE 1158
            PYA KLL+QEL SMN+  RL++ +
Sbjct: 1127 PYAAKLLVQELISMNVGVRLQMED 1150


>gi|322696543|gb|EFY88334.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
            acridum CQMa 102]
          Length = 1157

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1167 (52%), Positives = 811/1167 (69%), Gaps = 49/1167 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  PV +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPVNTRDDKFQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVSE---KLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+ +P       ++   ++ P  CRL DMTYAAPI+V+I Y++    
Sbjct: 73   DVDSNFWLEFTDIRVDRPRRQDHNDAKSRSEVTPMECRLRDMTYAAPIVVDIAYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+ML+S RC L G + A++  + ECPLDPGGYF+I GTEKV+LIQ
Sbjct: 129  DKQRIIRRNVPLGRMPVMLKSSRCRLSGANNAQMEAMNECPLDPGGYFVINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K NI +ASVTSST   KSKT + ++K ++ +  N  V+ IPI++++
Sbjct: 189  EQLSKNRVIVEADEKNNIISASVTSSTHERKSKTYVTLKKDRIVMTHNVLVEGIPIVIIL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    + + +E     ++TQ +ALEY+  +VK    ++ 
Sbjct: 249  KALGGLSDYEIMQLVAGSDGRYQDEFVINFDEATRAGVFTQHQALEYIGARVKMGSRKAM 308

Query: 304  FGSPPNDREG---RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG  P  R          L ++ +A+VP+   +F PK  YVA+M RR++ A  +   +DD
Sbjct: 309  FG--PQVRRNNVEEGLDALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDSKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK  + EV+ ++D  L K +R+   D    I    ++
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFLKKNNRAVPLDAVHMISNHANN 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I +G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE +   SG
Sbjct: 487  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVKRWIFTLDTGVEPIRNFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK FA   R +RR G I  FVS+ +N     V+IA+D
Sbjct: 547  AEMHREGSWVIHVNGTPFALTRYPKRFASRFRAMRRRGWISPFVSINLNSHFNAVHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K+ H+K L  G  +FDDFL  G++EYLDVNEE +AL+ +YE 
Sbjct: 607  EGRICRPYIIVKNGKQKLKDEHLKLLHLGKVTFDDFLTRGIVEYLDVNEEQDALVTIYEN 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+L
Sbjct: 667  QITQSTTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ T+TI+LV YDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVITKTIQLVHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRP-DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            C V +KYT   QKY N   +RI  P ++   G  R +  + +      LDDDGLA  G  
Sbjct: 787  CQVFRKYTTELQKYPNGRRERIGDPVNQVNGGTTRREEKYEA------LDDDGLATVGYR 840

Query: 836  IKPNDVYINKESPLETRGSIMSPTG----QTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            +K  +V + KE+PL+     ++ TG    +  S YR +  +Y+ PD     +D+V +   
Sbjct: 841  VKSGEVMVKKETPLD-----LTTTGIGLDRGPSEYRDSAISYRIPD--PAYIDKVMISQT 893

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            +     IK   R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+CPD+IMNPHGF
Sbjct: 894  EKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGF 953

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTVGK++E L GKA +  GR  YG  FG+ +  +  V+ +S+ L+ +GFS+ GKD  
Sbjct: 954  PSRMTVGKLLECLTGKASIIDGRPDYG--FGD-AFRSHPVKDMSQVLLDYGFSWEGKDYF 1010

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             SG+TG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GE
Sbjct: 1011 TSGLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGE 1070

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G C+TCK+   ++ 
Sbjct: 1071 MERDCLIAYGASQLLLERLMLSSDGVTLDICQQCGLFGY------KGYCNTCKSTRQVTQ 1124

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAE 1158
            M++PYA KLL+QEL SMN+  RL+L +
Sbjct: 1125 MQMPYAAKLLVQELISMNVGVRLQLED 1151


>gi|451845872|gb|EMD59183.1| hypothetical protein COCSADRAFT_175739 [Cochliobolus sativus ND90Pr]
          Length = 1215

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1142 (52%), Positives = 791/1142 (69%), Gaps = 46/1142 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK +GLVKQH+DS+N+FV+  ++KI++AN  + S  DP  
Sbjct: 96   KSLTDPINTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVDLKKIIKANRFVRSDFDPKF 155

Query: 79   FLRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
             L + D+R+  P+   +   E     + P+ CRL DMTYAAPI+V+I Y +G+   K T 
Sbjct: 156  LLEYTDIRVLSPNRQEEDDLEHHHSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRT- 214

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
                + IGR+PIML+S +CVL GK++ E+A + ECPLDPGGYFI +G EKV+L+QEQL+K
Sbjct: 215  ---GIKIGRMPIMLKSNKCVLAGKNDREMAVMEECPLDPGGYFITRGQEKVILVQEQLNK 271

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG + ASVTSST   ++KT +  +KG MYL  N   ++IPI+ VMKA+G+ 
Sbjct: 272  NRVIVES-AKGIMQASVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVH 330

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPN-D 310
            SD+E++ M+ G D  Y      + E CA   I+TQE+ALEY+  +V+  +   G+  N +
Sbjct: 331  SDKEILLMIAGEDSAYQDNFAINFEACAREQIHTQERALEYIGHRVRLVKKPLGTSRNRN 390

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
                A   L +V L +VPV   N+RPK  YVA+M RR++ AM +   +DD+DYVGNKRLE
Sbjct: 391  YHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLE 450

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIV-RDSITVGLERTLS 428
            LSGQ++SLLFED FK    + + ++D +L K  R+  FD  S F V ++ IT+G+ER ++
Sbjct: 451  LSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQVRAQEFDAFSHFSVHKNHITMGVERAIA 510

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 511  TGNWSLKRFKMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 570

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              DTPEGEACGLVKNLALMTH+TT++++ P+  + + LG ED+   +GEE+H    + V 
Sbjct: 571  TSDTPEGEACGLVKNLALMTHITTEDDDDPVRKIVFMLGAEDICSQTGEEIHAEGVYSVC 630

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +     PK F +  RKLRR G+I EF S+ ++     V++A+D GR+CRP++I +
Sbjct: 631  LNGTPIAVTDTPKRFLNSFRKLRRMGRISEFTSIHIDHDHCEVHVATDEGRICRPMIIVE 690

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
               S++   ++K L  G   F+DFL  GL+EYLD NEEN+  IAL E +    TTH+EIE
Sbjct: 691  NQHSKVTSRYLKALRKGTMEFEDFLTRGLVEYLDTNEENDTNIALKESEINQHTTHLEIE 750

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++
Sbjct: 751  PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMV 810

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL  YDKL AGQNATVAVMSYSGYDIEDA+++NK+S DRGFGRC V KK+    +
Sbjct: 811  KTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVFKKHVTPLK 870

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
             YAN+TSDRI        GA  +   +H       +  DG+A  G  ++  D ++ K  P
Sbjct: 871  TYANNTSDRI------NAGALDVANSNHQ-----AIGQDGIAQVGARLEAGDAFLLKSIP 919

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             +T        G   + Y+   + YK PD     +D+  +  +++G   IK L+R TRRP
Sbjct: 920  QDT-------AGPASNLYKDKPERYKLPD--CSYIDKACITENESGTTLIKLLMRQTRRP 970

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKG  G IVQQED PF+++GICPD+IMNPHGFPSRMTVGKM+ELL GKA
Sbjct: 971  ELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKA 1030

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+AFG       TVE +S+ LV+ GFSY GKD + SGITG   Q Y F GP
Sbjct: 1031 GVLNGTLEYGTAFG-----GSTVEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTFFGP 1085

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV DKMH+R  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGAS L+ E
Sbjct: 1086 IYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLE 1145

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD   V VC  CG +GY      +G C  C++   I  + +PYA KLLIQEL SM
Sbjct: 1146 RLMISSDAHNVDVCEKCGQMGY------SGYCKLCESEKAIRKITMPYAAKLLIQELGSM 1199

Query: 1149 NI 1150
            N+
Sbjct: 1200 NV 1201


>gi|451995160|gb|EMD87629.1| hypothetical protein COCHEDRAFT_1206799 [Cochliobolus heterostrophus
            C5]
          Length = 1215

 Score = 1199 bits (3101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1142 (53%), Positives = 791/1142 (69%), Gaps = 46/1142 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK +GLVKQH+DS+N+FV+  ++KI++AN  + S  DP  
Sbjct: 96   KSLTDPINTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVDLKKIIKANRFVRSDFDPKF 155

Query: 79   FLRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
             L + D+R+  P+   +   E     + P+ CRL DMTYAAPI+V+I Y +G+   K T 
Sbjct: 156  LLEYTDIRVLSPNRQEEDDLEHHRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRT- 214

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
                + IGR+PIML+S +CVL GK++ E+A + ECPLDPGGYFI +G EKV+L+QEQL+K
Sbjct: 215  ---GIKIGRMPIMLKSNKCVLAGKNDREMAVMEECPLDPGGYFITRGQEKVILVQEQLNK 271

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG + ASVTSST   ++KT +  +KG MYL  N   ++IPI+ VMKA+G+ 
Sbjct: 272  NRVIVES-AKGIMQASVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVH 330

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPN-D 310
            SD+E++ M+ G D  Y      + E CA   I+TQE+ALEY+  +V+  +   G+  N +
Sbjct: 331  SDKEILLMIAGEDSAYQDNFAINFEACAREQIHTQERALEYIGHRVRLVKKPLGTSRNRN 390

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
                A   L +V L +VPV   N+RPK  YVA+M RR++ AM +   +DD+DYVGNKRLE
Sbjct: 391  YHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLE 450

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIV-RDSITVGLERTLS 428
            LSGQ++SLLFED FK    + + ++D +L K  R+  FD  S F V ++ IT+G+ER ++
Sbjct: 451  LSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQVRAQEFDAFSHFSVHKNHITMGVERAIA 510

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 511  TGNWSLKRFKMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 570

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              DTPEGEACGLVKNLALMTH+TT++++ P+  + + LG ED+   +GEE+H    + V 
Sbjct: 571  TSDTPEGEACGLVKNLALMTHITTEDDDDPVRKIVFMLGAEDICSQTGEEIHAEGVYSVC 630

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +     PK F +  RKLRR G+I EF S+ ++     V+IA+D GR+CRP++I +
Sbjct: 631  LNGTPIAVTDTPKRFLNSFRKLRRMGRISEFTSIHIDHDHCEVHIATDEGRICRPMIIVE 690

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
               S++   ++K L  G   F+DFL  GL+EYLD NEEN+  IAL E D    TTH+EIE
Sbjct: 691  NQHSKVTSRYLKALRRGTMEFEDFLTRGLVEYLDTNEENDTNIALRESDINEHTTHLEIE 750

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++
Sbjct: 751  PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMV 810

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL  YDKL AGQNATVAVMSYSGYDIEDA+++NK+S DRGFGRC V KK+    +
Sbjct: 811  KTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVFKKHVTPLK 870

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
             YAN+TSDRI        GA  +   +H       +  DG+A  G  ++  D ++ K  P
Sbjct: 871  TYANNTSDRI------NAGALDVANPNHQ-----AIGQDGIAQVGARLEAGDAFLLKSIP 919

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             +T        G   + Y+   + YK PD     +D+  +  +++G   IK L+R TRRP
Sbjct: 920  QDT-------AGPASNLYKDKPERYKLPD--CSYIDKACITENESGTTLIKLLMRQTRRP 970

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKG  G IVQQED PF+++GICPD+IMNPHGFPSRMTVGKM+ELL GKA
Sbjct: 971  ELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKA 1030

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+AFG       TVE +S+ LV+ GFSY GKD + SGITG   Q Y F GP
Sbjct: 1031 GVLNGTLEYGTAFG-----GSTVEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTFFGP 1085

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV DKMH+R  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGAS L+ E
Sbjct: 1086 IYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLE 1145

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD   V VC  CG +GY      +G C  C++   +  + +PYA KLLIQEL SM
Sbjct: 1146 RLMISSDAHNVDVCEKCGQMGY------SGYCKLCESEKAVRKITMPYAAKLLIQELGSM 1199

Query: 1149 NI 1150
            N+
Sbjct: 1200 NV 1201


>gi|440297940|gb|ELP90581.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
            invadens IP1]
          Length = 1140

 Score = 1199 bits (3101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/1141 (51%), Positives = 804/1141 (70%), Gaps = 39/1141 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  PV +  DK++L+P F+K RGLV+QH+DSFNYF++  IR+IVRAND++    D   +L
Sbjct: 31   LGRPVNTAEDKWRLIPAFVKSRGLVRQHIDSFNYFIDEEIRQIVRANDKVTCDADSKFYL 90

Query: 81   RFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            ++ DV + QP +  +   E + P  CRL D++Y API  +IE+ +     + T     V 
Sbjct: 91   KYLDVWVHQPCVEENYKKEPITPMECRLRDLSYTAPIQASIEFTRDKKVYRKT-----VT 145

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG +PIML+S  CVLY     +  + GECP+DPGGYF++KG E+V+L QEQ+SKNR++I+
Sbjct: 146  IGYMPIMLQSKHCVLYNNTFDQFMKHGECPMDPGGYFVVKGVERVILSQEQMSKNRILIE 205

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            T  +G ++ASVTS+T  VKS+TV+ +++GK+YL  N   + +P+M+++KAMGMESD E +
Sbjct: 206  TSSQGFLSASVTSATHEVKSRTVVYLKRGKLYLKHNSLTEDVPVMIIIKAMGMESDMEFL 265

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPPNDREGRA 315
            Q VG    Y++ ++ SIEEC   ++  Q +AL Y+   +K     +      P   E R 
Sbjct: 266  QFVGNS--YTSKMINSIEECKTKNVLNQREALRYVGNHLKIYTGQKGYISKRPKVDEAR- 322

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L ++ L ++ V   NF+ K  Y+A+M+  +++A    + +DDKDY GNKR+EL+GQ+
Sbjct: 323  -DVLANLILPHIEVLRYNFKTKIIYIALMVSWILKADETGE-LDDKDYYGNKRMELAGQM 380

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   +E+Q      LSK +RS  FD+ + I    IT GL   LSTGN+ +K
Sbjct: 381  MSLLFEDLFKQFNTELQTIATKELSKKTRSESFDILKHISPHRITTGLIHALSTGNWVLK 440

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQ SQWGM+CP DTPEG
Sbjct: 441  RFNMDRAGVTQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEG 500

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            E+CGLVKN +L+T VTTD ++  ++++ + LGVED  L+SG+EL++ NS+LV  NG +LG
Sbjct: 501  ESCGLVKNFSLLTEVTTDSDDQAIMTMLFNLGVEDANLISGDELNSENSYLVFLNGQLLG 560

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
             H+ P  F    R LRR G++G+ VS+ +NE QR + I+SDGGRVCRPL++ +   S+I 
Sbjct: 561  IHQNPIHFLRQCRVLRRHGRLGKKVSLHLNETQRSINISSDGGRVCRPLIVVENAKSKIG 620

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
               ++++++G ++ +D +++G+IEYLDVNEENN+ IA+YE      TTH+EI+P +ILGV
Sbjct: 621  PKEIRDIVEGFKTIEDCIKDGMIEYLDVNEENNSYIAIYENQINEHTTHLEIDPLSILGV 680

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYLL YPQ P++ T+TI++
Sbjct: 681  VAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQVPMVRTKTIDM 740

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + +DK+ AG+NA VAVMSYSGYDIEDA ++NK+S+DRG+ RC V +K   + +KY N  S
Sbjct: 741  INFDKVPAGENAMVAVMSYSGYDIEDASILNKASIDRGYQRCFVYRKADVVIKKYRNGMS 800

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DR++ P       ++ +V          LD DG+ +PG  + P  +Y+NK++P  T   I
Sbjct: 801  DRVVCPTDEERAMKKYKV----------LDFDGVCSPGTKLMPGMIYLNKQAPNNTTRPI 850

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
             +    TD  +R    TYKG       VD+V + S     L IK  +R +RRPELGDKFS
Sbjct: 851  TTDV-PTDEDFRREALTYKG--SVPSYVDKVLITSSDEEPLKIKIGLRTSRRPELGDKFS 907

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV+QED PF+  GICPD+IMNPHGFPSRMTVGKM+EL+ GKAG+  G F
Sbjct: 908  SRHGQKGVTGLIVKQEDMPFTGDGICPDVIMNPHGFPSRMTVGKMLELVSGKAGLMDGTF 967

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
             YG+AFG      D ++ +S+ L++ G+SY+GK+++YSGITG  L+AYIF+GP+YYQKLK
Sbjct: 968  KYGTAFG-----GDKLDDMSKILIESGYSYDGKEVLYSGITGKTLRAYIFIGPVYYQKLK 1022

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMVLDKMHAR  GP+  LTRQPTEGR+R+GGLR+GEMERDCLI YGAS L+ ERLM SSD
Sbjct: 1023 HMVLDKMHARARGPKSSLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLLLERLMYSSD 1082

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             F+V VCR CGL+GY       G C  C++  N S++ +PYACKLL QE+QSMN+VPRL 
Sbjct: 1083 AFKVTVCRKCGLMGY------CGYCKYCQSSLNCSTITMPYACKLLFQEMQSMNVVPRLS 1136

Query: 1156 L 1156
             
Sbjct: 1137 F 1137


>gi|405953099|gb|EKC20822.1| DNA-directed RNA polymerase III subunit RPC2 [Crassostrea gigas]
          Length = 1060

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1144 (53%), Positives = 789/1144 (68%), Gaps = 104/1144 (9%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            DK+KLAAP+K++ +K++LLP FLKV+GLVKQH+DSFN+F+N  I+ I++AND+I+S  DP
Sbjct: 11   DKEKLAAPIKTIEEKWKLLPAFLKVKGLVKQHIDSFNFFINVEIKNIMKANDKILSDADP 70

Query: 77   SIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            + ++++ ++ +G P +     +++ ++PH CRL DMTY+API V+IEY +G+      + 
Sbjct: 71   NFYMKYLNIYVGMPDVEEGFNITKPISPHECRLRDMTYSAPITVDIEYTRGNQR----IV 126

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +N++ IGR+PIMLRS  CVL GK  AE+A+L ECP+DPGGYFI +GTEKV+LIQEQLSKN
Sbjct: 127  RNNLPIGRMPIMLRSSNCVLNGKSPAEMAKLNECPMDPGGYFITRGTEKVILIQEQLSKN 186

Query: 196  RVIIDTDKKGN--INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
            R+I+DTD   N  I  SVTSST   KSKT +  +  K YL  N F + IP+ +  KAMGM
Sbjct: 187  RMIVDTDTGRNRSIECSVTSSTHERKSKTYVSTKHEKFYLRHNTFTEDIPVAIAFKAMGM 246

Query: 254  ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-RSTFGSPPNDRE 312
            E DQE+VQM+G +      + P +EEC       + +AL+Y+  +V+ R  +G     + 
Sbjct: 247  ECDQEIVQMIGSEEEILTSVAPCLEECH------RAQALKYIGQRVRQRRVWGGSKKTKV 300

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A   L D+ LA+VPV   NF+ K  Y+A+M+RR++ A   +   DD+DY GNKRLEL+
Sbjct: 301  DEAREALHDIVLAHVPVVEWNFKLKAAYLALMVRRVILAKGEQVKGDDRDYYGNKRLELA 360

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            GQL+SLLFEDLFK   SE+++  D+ + KP R+++FD+ + + +D IT GL   +STGN+
Sbjct: 361  GQLLSLLFEDLFKKFNSELKRIADMTIPKP-RAAQFDIIKHMRQDQITNGLVNAISTGNW 419

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+TQVL+RLSFI  LG MTR+S Q                          
Sbjct: 420  SIKRFKMERAGVTQVLSRLSFISALGMMTRISSQ-------------------------- 453

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
                ACGLVKNLALMTH+TTD EE P+I L + +GVED++LLSGEE+ +   +LV  NG 
Sbjct: 454  ----ACGLVKNLALMTHITTDMEEDPIIRLAFNMGVEDIQLLSGEEMTSSRVYLVFLNGN 509

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ILG  R  K      R +RR+G I E                        P +I  KG  
Sbjct: 510  ILGVIRDHKKLVRTFRLMRRSGYISE------------------------PYIIVQKGQP 545

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             +K+ H++EL  G RSFDDFL+EGL+EYLDVNEEN+ +I+LYE   T +TTH+EIEPFTI
Sbjct: 546  LVKQRHIEELTQGFRSFDDFLKEGLVEYLDVNEENDCMISLYESGITRETTHLEIEPFTI 605

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ PL+ ++T
Sbjct: 606  LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLCYPQAPLVKSKT 665

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            IEL+ +DKL AGQNATVAVMS+SGYDIEDA+V+NK+SLDRGFGRC+V +K     ++Y N
Sbjct: 666  IELIHFDKLPAGQNATVAVMSFSGYDIEDALVLNKASLDRGFGRCLVYRKQACTLKRYTN 725

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
             + D+++ P      +    +  H       LD DG+ +PGE ++   V +NK  P  T 
Sbjct: 726  QSFDKVMGP--MVDASTHKPIWKHE-----ALDSDGICSPGERMENRQVLVNKWMPTVT- 777

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
               M+P            Q YKG   E C +++V + S+      IK L R TRRPE+GD
Sbjct: 778  ---MNPI-----------QQYKG--AEACYIEKVLISSNPEEAFLIKILQRQTRRPEIGD 821

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGVCG IV QED PF++ GICPD+IMNPHG+PSRMTVGK++ELLG KAGV  
Sbjct: 822  KFSSRHGQKGVCGLIVPQEDMPFTDLGICPDIIMNPHGYPSRMTVGKLMELLGSKAGVLE 881

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+FHYG+AFG      D V  +SE LVKHGF+Y GKD + SGITG PL+AYIF GPIYYQ
Sbjct: 882  GKFHYGTAFG-----GDKVCDLSEDLVKHGFNYLGKDFVTSGITGEPLEAYIFFGPIYYQ 936

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+
Sbjct: 937  KLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMI 996

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VC  CGLLGY      +G C  CK+  ++S++K+PYACKLL QELQSMNIVP
Sbjct: 997  SSDAFEVDVCGECGLLGY------SGWCEFCKSSRHVSTLKMPYACKLLFQELQSMNIVP 1050

Query: 1153 RLKL 1156
            RL L
Sbjct: 1051 RLSL 1054


>gi|400597534|gb|EJP65264.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
          Length = 1157

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1163 (52%), Positives = 799/1163 (68%), Gaps = 41/1163 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+  P          S  + P  CRL DM+YAAPILV+I Y++    
Sbjct: 73   DVDSNFWLEFTDIRVDHPQRQDYKEAKSSTDVTPMECRLRDMSYAAPILVDIVYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+MLRS +C L G + AE+ ++ ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DKQKIIRRNVSLGRMPVMLRSSKCRLSGANNAEMEKMNECPLDPGGYFIINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K  I +ASVTSST   KSKT + ++K ++ L+ N  V+ IPI++V+
Sbjct: 189  EQLSKNRVIVEADEKNRIISASVTSSTHERKSKTNVTLKKDRIVLVHNVLVEGIPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    L + +E     ++TQ +ALEY+  +VK    R  
Sbjct: 249  KALGGLSDYEIMQLVAGADGRYQDEFLINFDEATKAGVFTQHQALEYIGTRVKMGSRRGQ 308

Query: 304  FGSP---PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG      N  EG     L ++ +A+VP+   +F PK  YVA+M R+++ A  +   +DD
Sbjct: 309  FGPQVRRNNVEEG--LDALANLIIAHVPIEGLDFYPKAIYVAMMTRKVLMAAQDSKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK  + EV+ ++D  L K +R+   D    I    ++
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKRFMVEVKMSIDKFLKKNNRAVPLDAVNMISNHANN 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I +G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE +   SG
Sbjct: 487  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEEPVKRWVFTLDVGVEPIRNFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK F    R +RR G I  FVS+ +N     V+IA+D
Sbjct: 547  AEMHREGSYIIHINGTPFALTRYPKRFCSRFRTMRRRGWISPFVSISINLHFNAVHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K  H++ L  G  +FDDFLR G++EYLDVNEE +AL+ +YE 
Sbjct: 607  EGRICRPYIIVKNGFQKLKPEHLRLLQLGKVTFDDFLRNGVVEYLDVNEEQDALVTIYED 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+L
Sbjct: 667  KITMGTTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ ++TI+LV YDKL AGQNATV VMSYSGYDIEDA+V+NK S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVISKTIQLVNYDKLPAGQNATVVVMSYSGYDIEDALVLNKGSIDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C V +KYT   QKY N   +RI  P   G G +R +   H       LDDDGLA  G  +
Sbjct: 787  CQVFRKYTTELQKYPNGRRERIGDPVNEGDGDQRKRTEKHK-----ALDDDGLAMVGGRV 841

Query: 837  KPNDVYINKESPLE-TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
                  I KE+PL+ T   I    G +D  +R +   Y+ PD     +D+V +   +   
Sbjct: 842  FSGQSMIKKETPLDLTTTGIGLDRGSSD--FRDSAVNYRIPD--PAYIDKVMISHTEKDT 897

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K   R TRRPELGDKFSSRHGQKGV G IV+ ED PF++ G+ PD+IMNPHGFPSRM
Sbjct: 898  TVVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEHEDMPFADNGLTPDIIMNPHGFPSRM 957

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK++E L GKA +  GR  YG  FG+ +  +  +E +S+ L+ HGFS+ GKD   SG+
Sbjct: 958  TVGKLLECLTGKASIIHGRPDYG--FGD-AFRSHPLEEMSQVLLDHGFSWEGKDYFTSGL 1014

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERD
Sbjct: 1015 TGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERD 1074

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G C TCK+   ++ M +P
Sbjct: 1075 CLIAYGASQLLLERLMISSDGVVIDICQQCGLFGY------KGYCQTCKSTREVTKMTMP 1128

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YA KLL+QEL SMN+  RL+LA+
Sbjct: 1129 YAAKLLVQELISMNVGVRLQLAD 1151


>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
            NZE10]
          Length = 1147

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1152 (51%), Positives = 798/1152 (69%), Gaps = 49/1152 (4%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSG-IDPSIF 79
            L  P+ +  DK+ LLP FL+V+GL+KQH DSF+YF N  ++KI++AN+ I+S       +
Sbjct: 25   LTDPINTAQDKWNLLPAFLRVKGLIKQHTDSFDYFCNVELKKILKANEMIISKETKGKKW 84

Query: 80   LRFKDVRIGQPSMTVDG----VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            +RF D+R+G+PS   D     V   + P+ CRL DMTY+API ++  Y + S   K    
Sbjct: 85   IRFTDIRVGEPSRAEDAHKSYVQTTVTPNECRLRDMTYSAPIYIDYVYPRQSGNVK---- 140

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            K +V IGR+P+MLRS RCVL G+ E+++  L EC +DPGGYFI++G EKV+L+QEQLSKN
Sbjct: 141  KTNVQIGRMPMMLRSSRCVLSGRPESDMGMLNECAVDPGGYFIVRGQEKVILVQEQLSKN 200

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+I+++  KG I ASVTS T  VK+KT + ++KG +YL  N   + +P+ + ++AMG++S
Sbjct: 201  RIIVES-FKGMIQASVTSHTANVKTKTYVVLKKGHLYLKHNSLTEDVPVAIALRAMGVQS 259

Query: 256  DQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF---GSPPNDR 311
            D E++ +  G D +Y     P++E  A    +TQE+ L+Y+  ++K   F    SP  + 
Sbjct: 260  DHEILLLAAGNDAQYQDEFAPNLEMAALEGAFTQEQGLDYIATRLKPERFPVYASPTGEV 319

Query: 312  EG---RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
            +    +A   L    + +VPV + NFRPK  Y+A M RR++ AM++   +DD+DYVGNKR
Sbjct: 320  KTPKQKAMEKLAATIIPHVPVEDMNFRPKALYIAFMTRRVLMAMIDPKLVDDRDYVGNKR 379

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERT 426
            LEL+GQ+++LLFEDLFK    ++   ++  L K + ++ FD  + I +    IT G+ER 
Sbjct: 380  LELAGQMLALLFEDLFKDCTRQIFINMEKQLKKSNPTAEFDPLRLIEQCDARITSGMERA 439

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPRALQPSQ+GM
Sbjct: 440  ISTGNWTLKRFRMDRAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGM 499

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LC  DTPEGEACGLVKNLALMTH+TT +EEGP+  + Y LG E++   SG E++N  +++
Sbjct: 500  LCTSDTPEGEACGLVKNLALMTHITTADEEGPVRMIMYVLGAEEVTSASGAEIYNDGAYI 559

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG      R+PK F +  RK RR G+I EFVS+F+N     V+IA+D GRVCRPL++
Sbjct: 560  VFVNGTPTALTRQPKRFLNGFRKFRRMGRISEFVSIFINHHHNGVHIATDEGRVCRPLIV 619

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             ++G S++    ++ L  G  +FDD L  G++EYLDVNEEN++ IA+YE D    TTH+E
Sbjct: 620  VEQGKSKVTTRFLESLRKGSMNFDDALSRGIVEYLDVNEENDSNIAVYEKDIDEHTTHLE 679

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            IEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ P
Sbjct: 680  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQAP 739

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ TRTIELV YDKL AGQNA VAVMSYSGYDIEDA+V+NK+S DRGFGRC V KK +  
Sbjct: 740  MVKTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSMP 799

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             + Y N  +DR+   D             ++N     +  DG+   G  ++ +D+Y+ KE
Sbjct: 800  LKAYGNGHTDRMGTKD-------------NNNTRHRKIGTDGIVEVGVELENSDMYMLKE 846

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
             P+    S+     Q D ++     +YK PD   C  D+V + +++     IK   R TR
Sbjct: 847  CPVNQATSV----SQRDQKWSPMHMSYKLPD--PCYADKVMVTANEANSTIIKIQTRQTR 900

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPE+GDKFSSRHGQKGV G + +Q D PFS++G+ PD+IMNPHGFPSRMTVGKM+EL+ G
Sbjct: 901  RPEIGDKFSSRHGQKGVVGLLAEQADMPFSDQGVVPDIIMNPHGFPSRMTVGKMLELVSG 960

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            KAGV  G+  YG+AFG        VE +  TLVKHGFSY+GKD + SGITG  L  Y+F 
Sbjct: 961  KAGVLAGKHEYGTAFG-----GSKVEDMGRTLVKHGFSYSGKDCLTSGITGESLPMYVFF 1015

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GPIYYQKLKHMV DKMH+R +GPR +LTRQPTEGR+R GGLR+GEMERDCLIAYGAS L+
Sbjct: 1016 GPIYYQKLKHMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLL 1075

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD  EV VC+VCG++GY       G C +C +  ++  M +PYA KLLIQEL 
Sbjct: 1076 LERLMISSDAHEVDVCQVCGMMGY------NGWCQSCSSTRSVVRMTMPYAAKLLIQELM 1129

Query: 1147 SMNIVPRLKLAE 1158
            SMN+   L+LA+
Sbjct: 1130 SMNVKASLQLAD 1141


>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
            2508]
 gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
            [Neurospora tetrasperma FGSC 2509]
          Length = 1155

 Score = 1196 bits (3094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1165 (52%), Positives = 801/1165 (68%), Gaps = 47/1165 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  PV +  DKF L+P FLKV+GLVKQH+DS+NYFVN  I+ IVRAN  + S
Sbjct: 13   EPFYNGKKLTDPVSTTQDKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVRANRVVRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTYAAPILVNIEYVQGSH 128
              DP+ +L F+D+R+G P+ T DG   +    + P  CRL D+TYAAP+ V+I Y +   
Sbjct: 73   DQDPNFWLEFRDIRVGMPTRTEDGEQVQSRNPVTPMECRLRDLTYAAPVEVDIAYTR--- 129

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
             +K  + + ++ + RIP+ML+S +C L G   A++    ECPLDPGGYF+I GTEKV+LI
Sbjct: 130  -DKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKVILI 188

Query: 189  QEQLSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
            QEQLSKNR+I++ D+K G + ASVTSST   KSKT + ++K ++ L  N   + IPI++V
Sbjct: 189  QEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVVLKKDRIVLQHNTLSEPIPIVIV 248

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RS 302
            +KA G  SD +++++V G D RY    L + +E     +YTQ++ALEY+  +VK    R 
Sbjct: 249  LKAFGGLSDNDIIELVCGGDARYQDDFLINFDEAGRAGVYTQQQALEYVGARVKMGGNRP 308

Query: 303  TFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
             FG+ P  +        L ++ +A+V V   +F PK  Y+A+M+RR++ A  N   +DD+
Sbjct: 309  KFGAAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDR 368

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--I 419
            D+VGNKRLEL+GQL+SLLFEDLFK  IS+V+  +D    KP+R+S +D    I+ +   I
Sbjct: 369  DFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYI 428

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            + GL R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 429  SHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRAL 488

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGE 537
            QPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+  E P+  + +     V  +   +G 
Sbjct: 489  QPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGT 548

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H+  S+++  NG      R PK FA   R LRR G +  FVS+ +NE    V+IA+D 
Sbjct: 549  EMHSKGSYIIHLNGTPFAVTREPKRFAARFRTLRRRGWVSPFVSIHINEHFSAVHIATDE 608

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP +I   G S +K  H+K L  G  +FD FL  G++EYLDVNEEN+ L+AL E  
Sbjct: 609  GRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQ 668

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             T  TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL
Sbjct: 669  ITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLL 728

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+SLDRGFGRC
Sbjct: 729  YTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRC 788

Query: 778  IVVKKYTAINQKYANSTSDR---ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
             V +KYTA  Q Y N   DR   I++ +   P      +V H+     ILD DGLA  G 
Sbjct: 789  QVFRKYTAELQGYTNGRRDRVGGIMKDEDDKP------IVKHA-----ILDADGLAQVGS 837

Query: 835  IIKPNDVYINKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
             ++     I KE+PL+   + I    G  D  YR A   Y+  D    ++D+V +  ++ 
Sbjct: 838  KVESGQTMIKKETPLDQISTGIAGDRGSDD--YRDASTNYRISD--PAIIDKVMISVNER 893

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
             +  IK   R TRRPELGDKFSSRHGQKGV G IV +ED PFS++G+ PD+IMNPHGFPS
Sbjct: 894  ENKLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPS 953

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGK+ E L GKA V  G   YG  FG+ +  +  VES+ + L+ HGFS+ GKD   S
Sbjct: 954  RMTVGKLFECLTGKASVIAGEKDYG--FGD-AFRSHPVESMGQALIDHGFSWEGKDYFTS 1010

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            GITG P++AYI+ GPI+YQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEME
Sbjct: 1011 GITGEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEME 1070

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLIAYGAS L+ ERLM+SSD  E+ VC+ CGL GY       G C+ CK+  N++ M 
Sbjct: 1071 RDCLIAYGASQLLLERLMISSDGTELDVCQECGLFGY------KGYCNACKSTRNVTQMT 1124

Query: 1134 LPYACKLLIQELQSMNIVPRLKLAE 1158
            +PYACKLL+QEL SMN+  +LKL +
Sbjct: 1125 MPYACKLLVQELISMNVGVKLKLED 1149


>gi|46107920|ref|XP_381019.1| hypothetical protein FG00843.1 [Gibberella zeae PH-1]
          Length = 1157

 Score = 1196 bits (3093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1160 (52%), Positives = 799/1160 (68%), Gaps = 39/1160 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMT--VDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+ +P      D  S  ++ P  CRL DMTYAAPI V+I+Y++    
Sbjct: 73   EVDSNFWLEFTDIRVDKPRRQDWQDAKSHTEVTPMECRLRDMTYAAPISVDIQYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+ML+S  C L G +  ++  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DKQRIVRKNVPLGRMPVMLKSSICRLGGANNTKMEEMNECPLDPGGYFIIGGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNR+I++ D+K NI +ASVTSST   KSKT + ++K ++ L  N  V+ IPI++++
Sbjct: 189  EQLSKNRIIVEADEKNNIISASVTSSTHERKSKTYVTLKKDRILLTHNVLVEGIPIVIIL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    L + +E   + ++TQ +ALEY+  +VK    R  
Sbjct: 249  KALGGLSDMEIMQLVAGSDGRYQDEFLVNFDEATKVGVFTQHQALEYIGTRVKMAPRRGI 308

Query: 304  FGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG  P  R          L ++ +A+VP+   +F PK  YVA+M RR++ A  N   +DD
Sbjct: 309  FG--PQVRRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVAMMTRRVLIAAHNPKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK   + V+ ++D  L K +R+   D    I    ++
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKQFTTNVRMSIDKFLKKNNRAVPLDAVNMISNHANN 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I  G+ R + TGN++VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGYGINRAIQTGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE +   SG
Sbjct: 487  LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVDEEPVKRWIFTLDAGVEPIRNFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK FA   R +RR G I  FV + +N     V+IA+D
Sbjct: 547  AEMHREGSYIIHVNGTPFALTRYPKRFAQKFRTMRRRGWISPFVGININTHFNAVHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K  H++ L  G  +FDDFL  G++EYLDVNEEN+ALI +YE 
Sbjct: 607  EGRICRPYIIVKNGKQKLKPEHLRLLQMGKATFDDFLNRGIVEYLDVNEENDALITIYEH 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+L
Sbjct: 667  QVTQSTTHLEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ ++TI+L+GYDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C V +KYT   QKY N   +RI  P+  G G  + ++  H       LDDDGLA  G  +
Sbjct: 787  CQVFRKYTTELQKYPNGRRERIGDPEMEGEGKSKRRITKHE-----ALDDDGLAIVGYKV 841

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
               +  + KE+PL+   + +    +    +R +  +Y+  D     +D+V +   +    
Sbjct: 842  HSGEAMVKKETPLDQTSTGIG-LDRGPGEFRDSSVSYRIAD--PAYIDKVMISQTEKDTT 898

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK   R TRRPELGDKFSSRHGQKGV G IV+QED PFS+ G+ PD+IMNPHGFPSRMT
Sbjct: 899  VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMT 958

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGK++E L GKA +  GR  YG  FG+ +  +  +E +S+ LV HGFS+ GKD   SGIT
Sbjct: 959  VGKLLECLTGKASIIHGRPDYG--FGD-AFRSHPLEEMSQVLVDHGFSWEGKDYFTSGIT 1015

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G PL+AY+F GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1016 GEPLEAYVFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDC 1075

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LIAYGAS L+ ERLM+SSD  E+ +C+ CGL GY       G C TCK+   ++ M +PY
Sbjct: 1076 LIAYGASQLLLERLMISSDGTEIDICQQCGLFGY------KGYCHTCKSTREVTKMTMPY 1129

Query: 1137 ACKLLIQELQSMNIVPRLKL 1156
            A KLL+QEL SMN+  RL++
Sbjct: 1130 AAKLLVQELISMNVGVRLQM 1149


>gi|408388464|gb|EKJ68148.1| hypothetical protein FPSE_11615 [Fusarium pseudograminearum CS3096]
          Length = 1157

 Score = 1195 bits (3092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1160 (52%), Positives = 799/1160 (68%), Gaps = 39/1160 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMT--VDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +D + +L F D+R+ +P      D  S  ++ P  CRL DMTYAAPI V+I+Y++    
Sbjct: 73   EVDSNFWLEFTDIRVDKPRRQDWQDAKSHTEVTPMECRLRDMTYAAPISVDIQYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+ML+S  C L G +  ++  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DKQRIVRKNVPLGRMPVMLKSSICRLGGANNTKMEEMNECPLDPGGYFIIGGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNR+I++ D+K NI +ASVTSST   KSKT + ++K ++ L  N  V+ IPI++++
Sbjct: 189  EQLSKNRIIVEADEKNNIISASVTSSTHERKSKTYVTLKKDRILLTHNVLVEGIPIVIIL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    L + +E   + ++TQ +ALEY+  +VK    R  
Sbjct: 249  KALGGLSDMEIMQLVAGSDGRYQDEFLVNFDEATKVGVFTQHQALEYIGTRVKMAPRRGI 308

Query: 304  FGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG  P  R          L ++ +A+VP+   +F PK  YVA+M RR++ A  N   +DD
Sbjct: 309  FG--PQVRRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVAMMTRRVLIAAHNPKLVDD 366

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK   + V+ ++D  L K +R+   D    I    ++
Sbjct: 367  RDFVGNKRLELAGQLLSLLFEDLFKQFTTNVRMSIDKFLKKNNRAVPLDAVNMISNHANN 426

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I  G+ R + TGN++VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 427  IGYGINRAIQTGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 486

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE +   SG
Sbjct: 487  LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVDEEPVKRWIFTLDAGVEPIRNFSG 546

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK FA   R +RR G I  FV + +N     V+IA+D
Sbjct: 547  AEMHREGSYIIHVNGTPFALTRYPKRFAQKFRTMRRRGWISPFVGININTHFNAVHIATD 606

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K  H++ L  G  +FDDFL  G++EYLDVNEEN+ALI +YE 
Sbjct: 607  EGRICRPYIIVKNGKQKLKPEHLRLLQMGKATFDDFLNRGIVEYLDVNEENDALITIYEH 666

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+L
Sbjct: 667  QVTQSTTHLEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTL 726

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ ++TI+L+GYDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 727  LYTLVYPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGR 786

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C V +KYT   QKY N   +RI  P+  G G  + ++  H       LDDDGLA  G  +
Sbjct: 787  CQVFRKYTTELQKYPNGRRERIGDPEMEGEGKNKRRITKHE-----ALDDDGLAIVGYKV 841

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
               +  + KE+PL+   + +    +    +R +  +Y+  D     +D+V +   +    
Sbjct: 842  HSGEAMVKKETPLDQTSTGIG-LDRGPGEFRDSSVSYRIAD--PAYIDKVMISQTEKDTT 898

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK   R TRRPELGDKFSSRHGQKGV G IV+QED PFS+ G+ PD+IMNPHGFPSRMT
Sbjct: 899  VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMT 958

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGK++E L GKA +  GR  YG  FG+ +  +  +E +S+ LV HGFS+ GKD   SGIT
Sbjct: 959  VGKLLECLTGKASIIHGRPDYG--FGD-AFRSHPLEEMSQVLVDHGFSWEGKDYFTSGIT 1015

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G PL+AY+F GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1016 GEPLEAYVFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDC 1075

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LIAYGAS L+ ERLM+SSD  E+ +C+ CGL GY       G C TCK+   ++ M +PY
Sbjct: 1076 LIAYGASQLLLERLMISSDGTEIDICQQCGLFGY------KGYCHTCKSTREVTKMTMPY 1129

Query: 1137 ACKLLIQELQSMNIVPRLKL 1156
            A KLL+QEL SMN+  RL++
Sbjct: 1130 AAKLLVQELISMNVGVRLQM 1149


>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
 gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
            [Neurospora crassa]
 gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
          Length = 1155

 Score = 1195 bits (3092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1165 (52%), Positives = 801/1165 (68%), Gaps = 47/1165 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKF L+P FLKV+GLVKQH+DS+NYFVN  I+ IVRAN  + S
Sbjct: 13   EPFYNGKKLTDPISTTQDKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVRANRVVRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTYAAPILVNIEYVQGSH 128
              DP+ +L F+D+R+G P+ T DG   +    + P  CRL D+TYAAP+ V+I Y +   
Sbjct: 73   DQDPNFWLEFRDIRVGMPTRTEDGEQVQSRNPVTPMECRLRDLTYAAPVEVDIAYTR--- 129

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
             +K  + + ++ + RIP+ML+S +C L G   A++    ECPLDPGGYF+I GTEKV+LI
Sbjct: 130  -DKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKVILI 188

Query: 189  QEQLSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
            QEQLSKNR+I++ D+K G + ASVTSST   KSKT + ++K ++ L  N   + IPI++V
Sbjct: 189  QEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVVLKKDRIVLQHNTLSEPIPIVIV 248

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RS 302
            +KA G  SD +++++V G D RY    L + +E     +YTQ++ALEY+  +VK    R 
Sbjct: 249  LKAFGGLSDNDIIELVCGGDARYQDDFLINFDEAGRAGVYTQQQALEYVGARVKMGGNRP 308

Query: 303  TFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
             FG+ P  +        L ++ +A+V V   +F PK  Y+A+M+RR++ A  N   +DD+
Sbjct: 309  KFGAAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDR 368

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--I 419
            D+VGNKRLEL+GQL+SLLFEDLFK  IS+V+  +D    KP+R+S +D    I+ +   I
Sbjct: 369  DFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYI 428

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            + GL R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 429  SHGLNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRAL 488

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGE 537
            QPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+  E P+  + +     V  +   +G 
Sbjct: 489  QPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGT 548

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H+  S+++  NG      R PK FA   R LRR G +  FVS+ +NE    V+IA+D 
Sbjct: 549  EMHSKGSYIIHLNGTPFAVTREPKRFAARFRTLRRRGWVSPFVSIHINEHFSAVHIATDE 608

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP +I   G S +K  H+K L  G  +FD FL  G++EYLDVNEEN+ L+AL E  
Sbjct: 609  GRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQ 668

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             T  TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL
Sbjct: 669  ITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLL 728

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
            Y LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+SLDRGFGRC
Sbjct: 729  YTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRC 788

Query: 778  IVVKKYTAINQKYANSTSDR---ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
             V +KYTA  Q Y N   DR   I++ +   P      +V H+     ILD DGLA  G 
Sbjct: 789  QVFRKYTAELQGYTNGRRDRVGGIMKDEDDKP------IVKHA-----ILDADGLAQVGS 837

Query: 835  IIKPNDVYINKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
             ++     I KE+PL+   + I    G  D  YR A   Y+  D    ++D+V +  ++ 
Sbjct: 838  KVESGQTMIKKETPLDQISTGIAGDRGSDD--YRDASTNYRISD--PAIIDKVMISVNER 893

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
             +  IK   R TRRPELGDKFSSRHGQKGV G IV +ED PFS++G+ PD+IMNPHGFPS
Sbjct: 894  ENKLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPS 953

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGK+ E L GKA V  G   YG  FG+ +  +  VES+ + L+ HGFS+ GKD   S
Sbjct: 954  RMTVGKLFECLTGKASVIAGEKDYG--FGD-AFRSHPVESMGQALIDHGFSWEGKDYFTS 1010

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            GITG P++AYI+ GPI+YQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEME
Sbjct: 1011 GITGEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEME 1070

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLIAYGAS L+ ERLM+SSD  E+ VC+ CGL GY       G C+ CK+  N++ M 
Sbjct: 1071 RDCLIAYGASQLLLERLMISSDGTELDVCQECGLFGY------KGYCNACKSTRNVTQMT 1124

Query: 1134 LPYACKLLIQELQSMNIVPRLKLAE 1158
            +PYACKLL+QEL SMN+  +LKL +
Sbjct: 1125 MPYACKLLVQELISMNVGVKLKLED 1149


>gi|322784943|gb|EFZ11714.1| hypothetical protein SINV_06174 [Solenopsis invicta]
          Length = 1123

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1140 (52%), Positives = 789/1140 (69%), Gaps = 32/1140 (2%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            DK++L+  FL+ +GLVKQH+DS+NYF+N  I+ IV+AN++I S  DP  +L++ ++++G+
Sbjct: 2    DKWKLVKAFLQDKGLVKQHIDSYNYFINEEIKNIVKANEKIQSDEDPHFYLKYLNIQVGR 61

Query: 90   PSMTVDGVSEK---LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN----DVVIG 142
            P +       +     PH CRL D+ Y+API V IEYV+ +   K    K      VVIG
Sbjct: 62   PKLQDSCTLNRDYDTTPHECRLRDLNYSAPIEVEIEYVRNNPDNKEGGGKQRTWKKVVIG 121

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
             +PIMLRS  CVL  K E++LA+L ECP DPGGYFII G EKV+LIQEQ+ +NR++++ D
Sbjct: 122  MMPIMLRSSNCVLTKKSESQLAKLNECPHDPGGYFIINGQEKVILIQEQMVRNRIVLEVD 181

Query: 203  KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
             K  + A+  S T   K+KT +  + GK YL  N F   I I ++ KAMG+ SD E++QM
Sbjct: 182  NKDCVVAACNSFTHDKKTKTNVVGKSGKYYLRHNMFQDDILITIIFKAMGIVSDLEIMQM 241

Query: 263  VGRDPRYSALLLPSIEECA--NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
            VG   +Y      S+EEC   +L+I++Q +AL+YL  K K++ F  P +         + 
Sbjct: 242  VGTQDKYLDKFAASLEECQREDLNIFSQNQALKYLNSKRKQTRFHVPKSRVADEMKDAIA 301

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L++VPV + NFRPK  Y+A+M+RR++ A  ++  +DDKDY GNKRLEL+G L++L+F
Sbjct: 302  TNILSHVPVIDFNFRPKALYLALMIRRVINAQSDRSLIDDKDYYGNKRLELAGSLLALMF 361

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
            EDLFK    E+++  D  + K  +++ FD+++ +  D IT GL   +S+GN+ +KRF+M 
Sbjct: 362  EDLFKRFNWELKQIADKNIPK-IKAAAFDIAKHMRHDLITNGLAFAISSGNWTIKRFRME 420

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G+TQVL+RLS+I  LG MTRV  QFEK+RKVSGPR+LQ SQWGMLCP DTPEGEACGL
Sbjct: 421  RHGVTQVLSRLSYISALGMMTRVHSQFEKTRKVSGPRSLQGSQWGMLCPNDTPEGEACGL 480

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM H+TT+  E PLI L   LGVED+  L+GEEL     + V  NG++ G  +  
Sbjct: 481  VKNLALMAHITTEVPEKPLIDLMRNLGVEDIYTLAGEELTKEGVYTVFVNGIMAGIVQNH 540

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            K      R LRRAG I  FVS++   + +C+ ++SDGGR+CRP +I   G S +K  H+K
Sbjct: 541  KRLVKQFRLLRRAGYINSFVSIYTQHRHKCIQVSSDGGRLCRPCIIVKHGKSLVKPKHIK 600

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
            +L   + +F+DFL +GLIEYLDVNEEN++LIA  E +   DTTH+EI  F ILGV AGLI
Sbjct: 601  DLERNITTFEDFLYDGLIEYLDVNEENDSLIACTESEINEDTTHLEIAEFAILGVCAGLI 660

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYPHHNQSPRNTYQCAMGKQA+G+I  NQ  R+D+++Y L Y QRP++ TR IEL+ YDK
Sbjct: 661  PYPHHNQSPRNTYQCAMGKQAIGSIGENQRTRIDTVMYNLAYSQRPIVKTRAIELINYDK 720

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AG+NA VAVMSYSGYDIEDA++ NK+S+DRG+GRC+V +      +KYAN T DRI+ 
Sbjct: 721  LPAGENAIVAVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCTLKKYANQTQDRIMG 780

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE--SPLETRGSIMSP 858
            P  +     +  +  H      ILD DG+AAPGE+++   V +NK   +P E  G + S 
Sbjct: 781  P--SIDANTKKPLSKHE-----ILDSDGIAAPGELVENKTVMVNKSVPAPSENIGPVRSG 833

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
              QT + YR+A   YKG       V++V +  +      +K L+R TRRPE+GDKFSSRH
Sbjct: 834  NVQTQTEYRNAEIQYKGL--VPAYVEKVMISKNAEDAFLVKLLLRQTRRPEIGDKFSSRH 891

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKGV G IV+QED PF++ G+CPD+IMNPHGFPSRMTVGK+IE+L GKAGV  G+F   
Sbjct: 892  GQKGVIGLIVEQEDMPFNDYGMCPDIIMNPHGFPSRMTVGKLIEVLAGKAGVVNGKFQDA 951

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            +AFG        VE + E L K+G++Y GKD  Y+G+TG PL  YI+ GP+YYQKLKHMV
Sbjct: 952  TAFG-----GAKVEDLCEELAKNGYNYLGKDFFYNGMTGRPLIGYIYSGPVYYQKLKHMV 1006

Query: 1039 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1098
             DK+HAR  GPRV+LTRQPTEGRAR GGLR+GEMERDCLI YGASML+ ERLM+SSD F+
Sbjct: 1007 QDKIHARARGPRVVLTRQPTEGRAREGGLRLGEMERDCLIGYGASMLLIERLMISSDAFK 1066

Query: 1099 VQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            V VC  CGL+GY N       C  C++  ++S++ +PYACKLL QELQSMN+VPRL L E
Sbjct: 1067 VDVCNKCGLIGYNNW------CQRCQSSSSVSTITMPYACKLLFQELQSMNVVPRLSLKE 1120


>gi|452986015|gb|EME85771.1| hypothetical protein MYCFIDRAFT_40745, partial [Pseudocercospora
            fijiensis CIRAD86]
          Length = 1132

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1149 (51%), Positives = 797/1149 (69%), Gaps = 45/1149 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FL+V+GL+KQH DSF+YFV+  ++KI++AN+ I +  D   
Sbjct: 14   KSLTDPINTAADKWNLLPAFLRVKGLIKQHTDSFDYFVDIELKKILKANEFIFTD-DKRK 72

Query: 79   FLRFKDVRIGQPSMTVDG----VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            +++F D+R+G+P    D     V  ++ P+ CRL DMTYAAPI ++  Y +    +   +
Sbjct: 73   WIKFVDIRVGKPCRIEDARAGYVQTEVTPNECRLRDMTYAAPIYLDFIYPR----QAGNV 128

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K +V+IGR+P+MLRS +CVL G+ E+E+A L EC +DPGGYFI++G EKV+L+QEQLSK
Sbjct: 129  RKTNVLIGRLPMMLRSSKCVLKGRSESEMACLNECAVDPGGYFIVRGQEKVILVQEQLSK 188

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG I ASVTS T  VK+KT + ++KG +YL  N   + IP+ V+++AMG++
Sbjct: 189  NRVIVES-FKGVIQASVTSHTANVKTKTYVLLKKGHIYLKHNSLSEDIPVAVMLRAMGVQ 247

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR-- 311
            SD E++ +  G D +Y     P++E  A   ++TQE+AL+++  ++K   F S   +R  
Sbjct: 248  SDHEILLLAAGNDAQYQDEFAPNLELAALEGVFTQEQALDFIATRLKPDRFASRRQERTP 307

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            + +A   L    + +V V   NFRPK  YVA M RR++ AM +   +DD+DYVGNKRLEL
Sbjct: 308  KQQALEKLAGTIIPHVEVEGMNFRPKALYVAFMTRRVLMAMNDPKLVDDRDYVGNKRLEL 367

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLST 429
            +GQ++SLLFEDLFK  + +++  +D IL K + +  FD  + +  +   IT G+ER +ST
Sbjct: 368  AGQMLSLLFEDLFKDCVRQIKGNMDKILKKANPTQEFDPLRLVEQIESRITSGMERAIST 427

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+ +KRF+M R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPRALQPSQ+GMLC 
Sbjct: 428  GNWTLKRFRMDRAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCT 487

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             DTPEGEACGLVKNLALMTH+TT ++E P+  + Y LG ED+  +SG E++   +++V  
Sbjct: 488  SDTPEGEACGLVKNLALMTHITTADDEAPVRKIIYILGAEDVTSVSGTEIYGNGAYIVFI 547

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG      R+PK F    RK RR G+I EFVS+F+N     V+IA+D GRVCRPL++ +K
Sbjct: 548  NGTPAALTRQPKQFLLGFRKFRRMGRISEFVSIFINHHHNGVHIATDEGRVCRPLIVVEK 607

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G S++    ++ L  G   FDD L  GL+EYLDVNEEN++ IA+YE D    TTH+EIEP
Sbjct: 608  GKSKVTARFLESLRKGAMDFDDALSRGLVEYLDVNEENDSNIAVYEKDINEHTTHLEIEP 667

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
            FTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++T
Sbjct: 668  FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVT 727

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            TRTIELV YDKL AGQNA VAVMSYSGYDIEDA+V+NK+S DRGFGRC + KK +   + 
Sbjct: 728  TRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQIFKKISMPLKA 787

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            Y N  +DR+   D   P   R + +            DGL   G  ++  D+Y+ K SP+
Sbjct: 788  YGNGYTDRL---DDRDPSNTRHRKI----------GKDGLVEVGSELENGDMYMLKASPI 834

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
                +I     Q D ++     +YK PD      D+V + +++     +K   R TRRPE
Sbjct: 835  NQSQAI----PQKDQKWSPMHMSYKLPD--PSYADKVMITANEANTTILKIQTRQTRRPE 888

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGV G + +Q D PFS+ G+ PD+IMNPHGFPSRMTVGKM+EL+ GKAG
Sbjct: 889  IGDKFSSRHGQKGVVGLLAEQADMPFSDSGVVPDIIMNPHGFPSRMTVGKMLELVSGKAG 948

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            V  G+  YG+ FG        VE +   LVKHGFSY+GKD + SGITG  L  Y+F GPI
Sbjct: 949  VLTGKQEYGTPFG-----GSKVEDMGSILVKHGFSYSGKDHLTSGITGESLPFYVFFGPI 1003

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMV DKMH+R +GPR +LTRQPTEGR+R GGLR+GEMERDCLIAYGAS L+ ER
Sbjct: 1004 YYQKLKHMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLER 1063

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD  +V VC+ CG++GY       G C +C +   ++ M +PYA KLLIQEL SMN
Sbjct: 1064 LMISSDAHDVDVCQGCGMMGY------NGWCQSCGSSRGVTKMTMPYAAKLLIQELMSMN 1117

Query: 1150 IVPRLKLAE 1158
            +   L+LA+
Sbjct: 1118 VKASLQLAD 1126


>gi|340517820|gb|EGR48063.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1158

 Score = 1194 bits (3089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1168 (52%), Positives = 806/1168 (69%), Gaps = 50/1168 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGL-VKQHLDSFNYFVNTGIRKIVRANDRIV 71
            E   + +KL  P+ +  DKFQLLP FLKV+GL   +H+DS+N+FV   I++IVRAN  I 
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKGLSCARHIDSYNFFVEHEIKEIVRANRTIR 72

Query: 72   SGIDPSIFLRFKDVRIGQPSMTVDGVSE---KLNPHMCRLSDMTYAAPILVNIEYVQGSH 128
            S +D + +L F D+R+ +P       S+   ++ P  CRL DMTYAAPI V+I Y++   
Sbjct: 73   SDVDSNFWLEFTDIRVDRPRRLDYNDSKSRTEVTPMECRLRDMTYAAPIFVDIAYIR--- 129

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
             +K  + + +V +GR+P+ML+SC+C L G + +++ ++ ECPLDPGGYFI+ GTEKV+LI
Sbjct: 130  -DKQKIVRKNVPLGRMPVMLKSCKCRLSGANNSQMEQMNECPLDPGGYFIVNGTEKVILI 188

Query: 189  QEQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
            QEQLSKNRVI++ D+K N I+ASVTSST   KSKT + ++K K+ L  N  V+ +PI++V
Sbjct: 189  QEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTLKKDKIVLTHNILVEGVPIVIV 248

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RS 302
            +KA+G  SD E++Q+V G D RY    L + +E A   I+TQ++ALEY+  +VK    + 
Sbjct: 249  LKALGGLSDYEIMQLVAGSDGRYQDEFLVNFDEAAKAGIFTQQQALEYIGSRVKMGSKKG 308

Query: 303  TFGSPP---NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
             FG+     N  EG     L ++ +A+VP+   +F PK  YVA+M RR++ A  +   +D
Sbjct: 309  QFGAQARRNNVEEG--LDALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDPKLVD 366

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--D 417
            D+D+VGNKRLEL+GQL+SLLFEDLFK  +SEV+ ++D  L K +R+   D    I    +
Sbjct: 367  DRDFVGNKRLELAGQLLSLLFEDLFKRFMSEVKMSIDKFLKKNNRAVPLDAVHMISNHAN 426

Query: 418  SITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            SI +G+ R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPR
Sbjct: 427  SIGLGINRAIQSGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPR 486

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLS 535
            ALQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E P++   + L  GVE +   S
Sbjct: 487  ALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEAPVMRWIFTLDVGVEPIRNFS 546

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
            G E+H   S+++  NG      R PK F    R +RR G I  FV +  N     ++IA+
Sbjct: 547  GAEMHREGSYIIHVNGTPFALTRYPKRFTHRFRTMRRRGWISPFVGIHTNSHFNAIHIAT 606

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            D GR+CRP +I   G  ++K  H++ L  G  +FDDFL +G++EYLDVNEEN+ALI +YE
Sbjct: 607  DEGRICRPYIIVKNGKQKLKPEHLRLLQLGKVTFDDFLTKGIVEYLDVNEENDALITIYE 666

Query: 656  GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
               T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA NQ  R+D+
Sbjct: 667  DQVTMSTTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDT 726

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            LLY LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFG
Sbjct: 727  LLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFG 786

Query: 776  RCIVVKKYTAINQKYANSTSDRILRP-DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
            RC V +KYT   QKY N   +RI  P +    G  R    H +      LD DGLA  G+
Sbjct: 787  RCQVFRKYTTELQKYPNGRRERIGDPVNEIENGVMRRIKKHEA------LDADGLAVVGQ 840

Query: 835  IIKPNDVYINKESPLETRGSIMSPTG----QTDSRYRSARQTYKGPDGETCVVDRVALCS 890
             I   +  + KE+PL+     M+ TG    +  S YR    +Y+  D     +D+V +  
Sbjct: 841  RIHSGEAMVKKETPLD-----MTTTGIGLDRGPSEYRDTAVSYRIAD--PAYIDKVMISQ 893

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
             +     IK   R TRRPELGDKFSSRHGQKGV G IV QED PF++ G+CPD+IMNPHG
Sbjct: 894  TEKDTTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHG 953

Query: 951  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1010
            FPSRMTVGK++E L GKA +  GR  YG  FG+ +  +  VE +S+ LV HGFS+ GKD 
Sbjct: 954  FPSRMTVGKLLECLTGKASIVHGRKEYG--FGD-AFRSHPVEQVSKVLVDHGFSWEGKDY 1010

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1070
              SGITG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+G
Sbjct: 1011 FTSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLG 1070

Query: 1071 EMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNIS 1130
            EMERDCLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G C TCK+   ++
Sbjct: 1071 EMERDCLIAYGASQLLLERLMLSSDGVMIDICQQCGLFGY------RGYCGTCKSTREVT 1124

Query: 1131 SMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             M++PYA KLL+QEL SMN+  RL+L +
Sbjct: 1125 KMQMPYAAKLLVQELISMNVGVRLQLED 1152


>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
 gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
          Length = 1154

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1178 (51%), Positives = 805/1178 (68%), Gaps = 49/1178 (4%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            M + QV G  + +    K +   P++   DK+ L+P FLKVRGLVKQHL SF++FV   I
Sbjct: 1    MTIGQVNGRARIKSECGKDQKCMPLE---DKWLLVPAFLKVRGLVKQHLVSFDHFVQEEI 57

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMT--VDGVSEKLNPHMCRLSDMTYAAPIL 118
            R I+ +N +I S  +P+ +L++ D+RIG+PS    ++   +K+ P  CRL DMTY+API 
Sbjct: 58   RSIMLSNQKITSDANPNFYLKYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPIS 117

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+IEY +G+      + K D++IGR+PIMLRS +C+L    E ELAR+ ECP DPGGYF+
Sbjct: 118  VDIEYTRGNQR----VFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFV 173

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
            +KG+EKV+LIQEQLSKNR+++  +    +   V SST   KSKT + M+KGK  +  NQ 
Sbjct: 174  VKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTMKKGKYSVRHNQL 233

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
               +P+ ++ KAMG+ESD ++V  +G + +Y +    ++EE  N  +YTQ++AL Y+  K
Sbjct: 234  TDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQALAYVTSK 293

Query: 299  VKR---STFGSPPND--------REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
            VK    + FGS P          +E  A   L +  + ++   + NF+ K  Y+ +M RR
Sbjct: 294  VKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRR 353

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR 407
            +++  L ++ +DD+D+ GNKRLEL+G L+SLLFED+FK   SE+++  D  L K + ++ 
Sbjct: 354  LIQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALMK-TMAAP 412

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             D+ + + +D IT  +   +STGN+ +KRF+M R G+TQVL+RLS+I  LG MTR++  F
Sbjct: 413  LDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTF 472

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
            EK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLAL++H+TTD +E P++ L    G
Sbjct: 473  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSG 532

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
            VEDL  +    ++ P + L+  NG+++G    P+     +R LRR+G + EFVSV  +  
Sbjct: 533  VEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLT 592

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN 647
             R V+I+SDGGR+CRP +I   G   + + H++EL +G   F+DF+ +G++EYLDVNE N
Sbjct: 593  NRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEMN 652

Query: 648  NALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
            +ALIA+Y  +  P+TTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG IA+
Sbjct: 653  DALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAY 712

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            NQ  R+DS++YLL YPQRPL+ ++TIEL  ++KL AG N  +AVMSYSGYDIEDA+V+NK
Sbjct: 713  NQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNK 772

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            +SLDRG+GRC+V K      +KY N T DR+L P    P   R  +  H N     LD +
Sbjct: 773  ASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGP-ALDPNT-RKPIFKHKN-----LDQE 825

Query: 828  GLAAPGEIIKPNDVYINKESPLET--RGSIMSPTGQT------DSRYRSARQTYKGPDGE 879
            G+   G  I P    INK  P+ +   G   S +  T         Y+    TYK P   
Sbjct: 826  GIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTP--T 883

Query: 880  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 939
                +RV L  +++     K L+R TRRPELGDKFSSRHGQKGVCG I QQED PF++ G
Sbjct: 884  PSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLG 943

Query: 940  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 999
            + PD+IMNPHG+PSRMTVGK++ELL GKAGV  G +HYG+AFG      D V+ + E L 
Sbjct: 944  MVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFG-----GDQVKDVCEELA 998

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
              G++Y GKDM+ SGITG PL AYI+ GPIYYQKLKHMVLDKMHAR  GPR  LTRQPTE
Sbjct: 999  ACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTE 1058

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI 1119
            GR+R GGLR+GEMERDCLIAYGASML+ ERLMVSSD F+V VC  CG++G        G 
Sbjct: 1059 GRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTGCGVIG------SKGW 1112

Query: 1120 CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            C  C++  +++++K+PYACKLL QELQSMNIVPRL LA
Sbjct: 1113 CQKCRSSKSMANIKIPYACKLLFQELQSMNIVPRLDLA 1150


>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1150

 Score = 1192 bits (3083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1162 (52%), Positives = 800/1162 (68%), Gaps = 46/1162 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  PV +  DKF L+P FLKV+GLVKQH+DS+NYFVN  I+ IV+AN  + S
Sbjct: 13   EPFYNGKKLTDPVSTKEDKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVS-EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
              DP+ +L F+D+R+G P+ T DG   +  NP  CRL D+TYAAP+ V+I Y +    +K
Sbjct: 73   DQDPNFWLEFRDIRVGMPTRTEDGEQVQSRNP--CRLRDLTYAAPVEVDIAYTR----DK 126

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            + + + ++ + RIP+ML+S +C L G   A++    ECPLDPGGYF+I GTEKV+LIQEQ
Sbjct: 127  SVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKVILIQEQ 186

Query: 192  LSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++ D+K G + ASVTSST   KSKT + ++K ++ L  N   + IPI++V+KA
Sbjct: 187  LSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVVLKKDRIVLQHNTLSEPIPIVIVLKA 246

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFG 305
             G  SD +++++V G D RY    L + +E     +YTQ++ALEY+  +VK    R  FG
Sbjct: 247  FGGLSDNDIIELVCGGDARYQDDFLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFG 306

Query: 306  SPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            + P  +        L ++ +A+V V   +F PK  Y+A+M+RR++ A  N   +DD+D+V
Sbjct: 307  AAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFV 366

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVG 422
            GNKRLEL+GQL+SLLFEDLFK  IS+V+  +D    KP+R+S +D    I+ +   I+ G
Sbjct: 367  GNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYISHG 426

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            L R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPS
Sbjct: 427  LNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPS 486

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGEELH 540
            QWGMLC  DTPEGEACGLVKNLALMTH+TT+  E P+  + +     V  +   +G E+H
Sbjct: 487  QWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMH 546

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
            +  S+++  NG      R PK FA   R LRR G +  FVS+ +NE    V+IA+D GR+
Sbjct: 547  SKGSYIIHLNGTPFAVTREPKRFAARFRTLRRRGWVSPFVSIHINEHFSAVHIATDEGRI 606

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRP +I   G S +K  H+K L  G  +FD FL  G++EYLDVNEEN+ L+AL E   T 
Sbjct: 607  CRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQITN 666

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
             TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY L
Sbjct: 667  STTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTL 726

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
            VYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+SLDRGFGRC V 
Sbjct: 727  VYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVF 786

Query: 781  KKYTAINQKYANSTSDR---ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
            +KYTA  Q Y N   DR   I++ +   P      +  H+     ILD DGLA  G  ++
Sbjct: 787  RKYTAELQGYTNGRRDRVGGIMKDEDDKP------IAKHA-----ILDADGLAQVGSKVE 835

Query: 838  PNDVYINKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
                 I KE+PL+   + I    G  D  YR A   Y+  D    ++D+V +  ++  + 
Sbjct: 836  SGQTMIKKETPLDQISTGIAGDRGSDD--YRDASTNYRISD--PAIIDKVMISVNERENK 891

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK   R TRRPELGDKFSSRHGQKGV G IV +ED PFS++G+ PD+IMNPHGFPSRMT
Sbjct: 892  LIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMT 951

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGK+ E L GKA V  G   YG  FG+ +  +  VES+ + L+ HGFS+ GKD   SGIT
Sbjct: 952  VGKLFECLTGKASVIAGEKDYG--FGD-AFRSHPVESMGQALIDHGFSWEGKDYFTSGIT 1008

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G P++AYI+ GPI+YQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1009 GEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDC 1068

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LIAYGAS L+ ERLM+SSD  E+ VC+ CGL GY       G C+ CK+  N+  M +PY
Sbjct: 1069 LIAYGASQLLLERLMISSDGTELDVCQECGLFGY------KGYCNACKSTRNVKQMTMPY 1122

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            ACKLL+QEL SMN+  +LKL +
Sbjct: 1123 ACKLLVQELISMNVGVKLKLED 1144


>gi|396477501|ref|XP_003840283.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
 gi|312216855|emb|CBX96804.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
          Length = 1257

 Score = 1192 bits (3083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1142 (52%), Positives = 788/1142 (69%), Gaps = 46/1142 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK +GLVKQH+DS+N+FV+  ++KI++AN  + S  DP  
Sbjct: 138  KSLTEPINTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKANRFVRSDFDPKF 197

Query: 79   FLRFKDVRIGQPSMT----VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
             L + D+RI  P+      +D     + P+ CRL DMTYAAPI+V+I Y +G+      +
Sbjct: 198  LLEYVDIRILSPNRQEEDDLDHHRSTITPNECRLRDMTYAAPIVVDIIYTRGN----AKV 253

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            ++  + IGR+PIML+S +CVL GK + E+A + ECPLDPGGYFI +G EKV+L+QEQL+K
Sbjct: 254  KRTGIRIGRMPIMLKSSKCVLAGKSDREMAVMEECPLDPGGYFITRGQEKVILVQEQLNK 313

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG + ASVTSST   ++KT +  +KG M+L  N   +++PI+  +KA+G+ 
Sbjct: 314  NRVIVES-AKGIMQASVTSSTHERRTKTYVIQKKGLMFLRHNTLSEEVPIVFALKALGVH 372

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV---KRSTFGSPPND 310
            SD+E++ MV G D  Y      + E CA   I+TQEKALEY+  +V   K+    S   +
Sbjct: 373  SDKEILLMVAGDDSAYQDNFAINFEACAREKIHTQEKALEYIGHRVRLVKKPLGASRMRN 432

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
                A   L +V L +VPV   N+RPK  Y+A+M RR++ AM +   +DD+DYVGNKRLE
Sbjct: 433  YHLEAIECLSNVVLPHVPVEGTNYRPKALYIALMARRVLMAMQDPKLVDDRDYVGNKRLE 492

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVRDS-ITVGLERTLS 428
            LSGQ++SLLFED FK    + + ++D +L K +R+  FD  + F V  S IT+G+ER ++
Sbjct: 493  LSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQNRAQEFDAFTHFSVHKSQITMGIERAIA 552

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 553  TGNWSLKRFKMDRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 612

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              DTPEGEACGLVKNLALMTH+TT+++E P+  + + LG ED+   +GEE+H+   + V 
Sbjct: 613  TSDTPEGEACGLVKNLALMTHITTEDDEEPVRKIIFLLGAEDICSQTGEEIHSEGIYSVC 672

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +     PK F +  RKLRR G+I EF S+ +N     V++A+D GR+CRP+++ +
Sbjct: 673  LNGTPIAVTDTPKRFLNSFRKLRRMGRISEFTSIHINHDFCEVHVATDEGRICRPMIVVE 732

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
               S++   ++K L  G   F+DFL  GL+EYLD NEEN+  IAL E D    TTH+EIE
Sbjct: 733  NQHSKVTSRYLKALRKGTMEFEDFLTRGLVEYLDTNEENDTNIALKEEDINQHTTHLEIE 792

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++
Sbjct: 793  PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYLMVYPQQPMV 852

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL  YDKL AGQNATVAVMSYSGYDIEDA+++NK+S DRGFGRC V+KK+    +
Sbjct: 853  KTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVLKKHVTPLK 912

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
             YAN TSDRI        GA   +   H  + L     DG+A  G  I+  D ++ K  P
Sbjct: 913  TYANGTSDRI------NAGALNSENPSHQAIGL-----DGIAQVGARIEAGDAFLLKSIP 961

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             +T        G   + Y+   + YK PD     VD+  +  ++ G   IK L+R TRRP
Sbjct: 962  QDT-------AGPASNIYKDKPEKYKMPD--CSYVDKACITENEAGTTLIKLLMRQTRRP 1012

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKG  G IVQQED PF+++GI PD+IMNPHGFPSRMTVGKM+ELL GKA
Sbjct: 1013 ELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKA 1072

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+AFG        VE +S+ LV++GFSY GKD + SGITG   Q Y F GP
Sbjct: 1073 GVLRGTLEYGTAFG-----GSRVEDMSQVLVENGFSYTGKDYLTSGITGEAHQFYTFFGP 1127

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV DKMH+R  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGAS L+ E
Sbjct: 1128 IYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLE 1187

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD  +V VC  CG +GY      +G C  C++   I  + +PYA KLLIQEL SM
Sbjct: 1188 RLMISSDAHDVDVCEKCGQMGY------SGYCKLCESEKAIRRITMPYAAKLLIQELGSM 1241

Query: 1149 NI 1150
            N+
Sbjct: 1242 NV 1243


>gi|398407271|ref|XP_003855101.1| DNA-directed RNA polymerase III subunit RET1 [Zymoseptoria tritici
            IPO323]
 gi|339474985|gb|EGP90077.1| hypothetical protein MYCGRDRAFT_84794 [Zymoseptoria tritici IPO323]
          Length = 1158

 Score = 1191 bits (3082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1151 (51%), Positives = 786/1151 (68%), Gaps = 46/1151 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FL+V+GL+KQH DS++YF++  ++KIV+AND I+S  D   
Sbjct: 37   KSLTDPINTAQDKWNLLPAFLRVKGLIKQHTDSYDYFIDVELKKIVKANDFILSDTDKKK 96

Query: 79   FLRFKDVRIGQPSMTVD----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            +LRF D+R+G+P    D     V   + P+ CRL DMTYAAPI V+  Y + S      +
Sbjct: 97   WLRFTDIRVGKPCRVEDTRSGWVETAVTPNECRLRDMTYAAPIYVDFVYPRQS----GNV 152

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K DV+IGR+P+MLRS +CVL G+ E+E+A L EC +DPGGYFI++G EKV+L+QEQLSK
Sbjct: 153  RKTDVMIGRMPMMLRSSKCVLNGRSESEMAWLNECAVDPGGYFIVRGQEKVILVQEQLSK 212

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NR+I++T  KG I ASVTS T  VK+KT + ++KG +YL  N   + IP+ ++++AMG++
Sbjct: 213  NRIIVET-FKGVIQASVTSHTANVKTKTYVLVKKGHIYLKHNSLNEDIPVAIMLRAMGVQ 271

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            SD E++ +  G D +Y     P++E  A    +TQE+ALEY+  ++K   FG      E 
Sbjct: 272  SDHEILLLAAGNDAQYQDEFAPNLEVAAIEGAFTQEQALEYIATRLKPDRFGDKWKRNEK 331

Query: 314  R----AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
                 A   L    + +V V   NFRPK  Y+A M RR++ AM +   +DD+DYVGNKRL
Sbjct: 332  TPKQTALEKLAATIIPHVEVEGMNFRPKALYIAFMTRRVLMAMNDPKLVDDRDYVGNKRL 391

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERTL 427
            EL+GQ+++LLFEDLFK  +  ++  +D  L KP+ +  FD  + + +    IT G+ER +
Sbjct: 392  ELAGQMLALLFEDLFKDFVRMIKVNMDKTLKKPNPTQEFDPVRIVEQGEARITSGMERAI 451

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            STGN+ +KRF+M R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPRALQPSQ+GML
Sbjct: 452  STGNWTLKRFRMDRAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGML 511

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            C  DTPEGEACGLVKNLALMTH+TT ++E P+  + Y LG ED+  +SG E++   ++++
Sbjct: 512  CTSDTPEGEACGLVKNLALMTHITTADDEAPVRKMMYVLGAEDVTSVSGTEIYGNGAYII 571

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG      R+PK F +  RK RR G+I EFVS+++N     V+IA+D GRVCRPLV+ 
Sbjct: 572  FINGTPAALTRQPKQFLNGFRKFRRMGRISEFVSIYINHHHNGVHIATDEGRVCRPLVVV 631

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            +KG S++    ++ L  G   FDD L  G++EYLDVNEEN++ IA+YE      TTH+EI
Sbjct: 632  EKGKSKVTVRFLESLRKGTMDFDDALSRGIVEYLDVNEENDSNIAVYEKQIDEHTTHLEI 691

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFTILG +AGLIPYPHHNQSPRNTYQ  +  QA+G IA+NQ  R+D+LLYL+VYPQ+P+
Sbjct: 692  EPFTILGAVAGLIPYPHHNQSPRNTYQACLPPQAIGAIAYNQFTRIDTLLYLMVYPQKPM 751

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            +TTRTIELV YDKL AGQNA VAVMSYSGYDIEDA+V+NK+S DRGFGRC V KK +   
Sbjct: 752  VTTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKISMPL 811

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            + Y N   DR+   DR        ++             DGL   G  I+ +D+Y+ KE 
Sbjct: 812  KSYGNGYQDRL--GDRDAKNTRHRKI-----------GKDGLVEVGSEIESSDMYMLKEQ 858

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P+    +I     Q + ++     +YK PD   C  D+V + +++     IK   R TRR
Sbjct: 859  PMNQASAI----PQKEQKWSPMHMSYKLPD--PCYADKVQITTNEANSTIIKIQTRQTRR 912

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PE+GDKFSSRHGQKGV G + +Q D PFS+ G+ PD+IMNPHGFPSRMTVGKM+EL+ GK
Sbjct: 913  PEIGDKFSSRHGQKGVVGLLAEQVDMPFSDSGVIPDIIMNPHGFPSRMTVGKMLELVSGK 972

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
            AGV  G+  YG+AFG        VE +  TLVKHGFSY+GKD + SGITG  L  Y+F G
Sbjct: 973  AGVLAGKQEYGTAFG-----GSKVEDMGATLVKHGFSYSGKDCLTSGITGESLPMYVFFG 1027

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            PIYYQKLKHMV DKMH+R +GPR +LTRQPTEGR+R GGLR+GEMERDCLIAYGAS L+ 
Sbjct: 1028 PIYYQKLKHMVQDKMHSRATGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLL 1087

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERLM+SSD  EV VC+ CG++GY N         +      +  M +PYA KLLIQEL S
Sbjct: 1088 ERLMISSDAHEVDVCQNCGMMGYNNWCQSCSSSRS------VVRMTMPYAAKLLIQELMS 1141

Query: 1148 MNIVPRLKLAE 1158
            MN+   L+LA+
Sbjct: 1142 MNVKASLQLAD 1152


>gi|209489360|gb|ACI49130.1| hypothetical protein Cbre_JD16.002 [Caenorhabditis brenneri]
 gi|341883892|gb|EGT39827.1| hypothetical protein CAEBREN_00456 [Caenorhabditis brenneri]
          Length = 1152

 Score = 1189 bits (3077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1153 (51%), Positives = 794/1153 (68%), Gaps = 55/1153 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            DK+ L+P FLKVRGLVKQHL SF++FVN  IR I+ +N +I S  +P+ +L++ D+R+G 
Sbjct: 26   DKWLLVPAFLKVRGLVKQHLVSFDHFVNEEIRNIMLSNQKITSDANPNFYLKYLDIRVGT 85

Query: 90   PSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            PS    ++   +K+ P  CRL DMTY+API V+IEY +G+      + K D++IGR+PIM
Sbjct: 86   PSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQR----VLKKDLIIGRMPIM 141

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            LRS +C+L    E  LAR+ ECP DPGGYF++KG+EKV+LIQEQLSKNR+++  +    +
Sbjct: 142  LRSSKCILRDLAEEGLARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKEL 201

Query: 208  NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP 267
               V SST   KSKT + ++KGK  +  NQ    +P+ ++ KAMG+ESD ++V  +G + 
Sbjct: 202  QCEVLSSTSERKSKTYVTVKKGKYLVRHNQLTDDVPVSIIFKAMGIESDYDIVSTIGHEE 261

Query: 268  RYSALLLPSIEECANLDIYTQEKALEYLEGKVKR---STFGSPPND--------REGRAF 316
            +Y +    +IEEC N  +YTQ++AL Y+  KVK    + FGS P          +E  A 
Sbjct: 262  KYVSAFAQTIEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAV 321

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
              L +  + ++   + NF+ K  Y+  M RR+++  L ++ +DD+D+ GNKRLEL+G L+
Sbjct: 322  DFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQTELGENELDDRDFYGNKRLELAGSLL 381

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            +LLFED+FK   SE+++  D  L K + ++  D+ + + +D IT  +   +STGN+ +KR
Sbjct: 382  ALLFEDVFKRFNSELKRIADNALMK-TMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKR 440

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            F+M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGMLCP DTPEGE
Sbjct: 441  FRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGE 500

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLAL++H+TTD +E P++ L    GVEDL  +    ++ P + L+  NG+++G 
Sbjct: 501  ACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLNNVHFSHINKPENTLIFLNGVLIGT 560

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
               P+     +R LRR+G + EFVSV  +   R V+I+SDGGR+CRP +I   G   + +
Sbjct: 561  AVDPERVVRAVRDLRRSGLLSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKDGKPMLTQ 620

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             ++ EL +G R F+DF+ +G++EYLDVNE N+ALIA+YE +   +TTH+EIEPFT+LGV 
Sbjct: 621  ENVTELKEGKRIFEDFVDDGIVEYLDVNEMNDALIAVYENEIGLETTHLEIEPFTLLGVC 680

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQAMG IA+NQ  R+DS++YLL YPQRPL+ ++TIEL+
Sbjct: 681  AGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELI 740

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             ++KL AG N  +AVMSYSGYDIEDA+V+NK+SLDRG+GRC+V K      +KY N T D
Sbjct: 741  NFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTARKYPNQTFD 800

Query: 797  RILRPDRTGPGAE---RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL---- 849
            R+L     GP  +   +  ++ H N     LD +G+   G  I P    INK  P+    
Sbjct: 801  RLL-----GPALDPITKKPIMKHKN-----LDKEGIVFAGARILPKQTIINKHMPVVSGD 850

Query: 850  -----ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
                  +  +I     Q D  Y+    TYK P       +RV L  ++      K L+R 
Sbjct: 851  NNPASASANTIGIAGRQVD--YKDVSVTYKTP--TPSYAERVLLTYNEEEAHLFKVLLRQ 906

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPELGDKFSSRHGQKGVCG I QQED PF++ G+ PD+IMNPHG+PSRMTVGK++ELL
Sbjct: 907  TRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELL 966

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAGV  G +HYG+AFG      D V+ + E L   G++Y GKDM+ SGITG PL AYI
Sbjct: 967  SGKAGVMNGTYHYGTAFG-----GDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSAYI 1021

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            + GPIYYQKLKHMVLDKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLIAYGASM
Sbjct: 1022 YFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASM 1081

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLMVSSD F+V VC  CG++G        G C  C++  +++++K+PYACKLL QE
Sbjct: 1082 LLIERLMVSSDEFKVDVCTGCGVIG------SKGWCQKCRSSKSMANIKIPYACKLLFQE 1135

Query: 1145 LQSMNIVPRLKLA 1157
            LQSMNIVPRL LA
Sbjct: 1136 LQSMNIVPRLDLA 1148


>gi|209876614|ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
 gi|209555355|gb|EEA05400.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1219

 Score = 1189 bits (3076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1207 (49%), Positives = 808/1207 (66%), Gaps = 92/1207 (7%)

Query: 20   KLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPS 77
            +L  PV S+++K+++LP FLK  GLVK H++S+NYFV   IR I+RA  N  I S +DPS
Sbjct: 32   RLLKPVDSLIEKWRILPHFLKTEGLVKHHIESYNYFVTVDIRNIIRAHSNRFIKSDVDPS 91

Query: 78   IFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
             F+ F D R+G P +  + V+  L P MCR+ D+TYAAPI V+++YV+G++     + K 
Sbjct: 92   FFIEFLDARVGMPKLEENMVTIDLTPMMCRMRDITYAAPIYVDVDYVRGNNV----VRKK 147

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            +V IGRIP+MLRS  C+LYGK   E+  L ECP DPGGYF++KGTEKV+L+QEQLSKNR+
Sbjct: 148  NVEIGRIPVMLRSKVCILYGKTPLEMINLSECPHDPGGYFVVKGTEKVILMQEQLSKNRI 207

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D K N  A+VTS+T   KS+T++  + GK+YL  N F   IP+ +V+KAMG+E++Q
Sbjct: 208  IVELDNKHNYCATVTSTTAESKSRTLVVYKNGKLYLRHNSFTDDIPLCIVLKAMGIETEQ 267

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK---RSTFG--------- 305
            E+ Q++G    +   ++ S+++     I TQ +AL+++  ++K   R +FG         
Sbjct: 268  ELFQVIGNKSYHYEGIITSLQDVHIEKIITQRQALQFMSKRMKSKVRMSFGFTGGRPNRH 327

Query: 306  SPPNDREGRA--------------------------FSILRDVFLANVPVHNNNFRPKCF 339
            +P    + R+                             L  V L++V     + RPK  
Sbjct: 328  NPTYTEQNRSEEALDRMNTSNADNTLVRQVNGIEDVLETLNRVVLSHVGTIYGDLRPKAL 387

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIIL 399
             + +M RR+++A  N+  +DDKDY GNKR+EL+GQL+S+LFEDLFK   S  +K +D  L
Sbjct: 388  ILCLMARRVIDASENQSLLDDKDYYGNKRIELAGQLISILFEDLFKRFASLTKKQIDQTL 447

Query: 400  ----------------SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKG 443
                             + + S+  D  + +  D IT G++  LSTGN+ +KRF+M R G
Sbjct: 448  VRYFQTKDNSSKVTSGKEDTNSNYPDCFRNLPTDIITRGMQTALSTGNWSIKRFRMERSG 507

Query: 444  MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKN 503
            MTQVL+R S+I  LG MTRV  QFEK+RKVSGPRALQPSQWG+LCPCDTPEGE+CGLVKN
Sbjct: 508  MTQVLSRYSYISALGIMTRVDSQFEKARKVSGPRALQPSQWGILCPCDTPEGESCGLVKN 567

Query: 504  LALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL-------------HN--PNSFLVI 548
            LAL TH+TTD     LI L + LGV+D+   S  E              HN   N++ + 
Sbjct: 568  LALTTHITTDHNPQYLIGLLFSLGVQDIASASWFEWKQHSQDGNTSLREHNLSGNAYFIF 627

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG +LG H  P+  A  +R LRR G I +FVS+F N  Q  V IA+DGGR+CRPL+I D
Sbjct: 628  INGALLGIHYNPETLASNLRDLRRKGYISQFVSIFCNHSQYSVQIATDGGRLCRPLIIVD 687

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G  RI++ H++ L +   +F+D + +G++E++DVNEENN LIAL E + T +TTH+EI+
Sbjct: 688  NGKQRIQKEHIENLENKQITFNDLINKGILEWIDVNEENNLLIALKEENITEETTHVEID 747

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            P  ILGV++GLIPYP+HNQSPRNTYQCAMGKQ MG +  NQ  R DS+LYLLVYPQ+PL 
Sbjct: 748  PLAILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGVVGLNQFLRCDSILYLLVYPQKPLC 807

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIE++ +++L AGQN++VA+MSY+GYDIEDAI+MNK+S+DRGF RC V+K+ T   Q
Sbjct: 808  KTRTIEMINFEQLPAGQNSSVAIMSYTGYDIEDAIIMNKASIDRGFARCFVIKRQTVELQ 867

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            K  N  ++ ++ P++    +     V++SN    +L++DG+   GE++  +D+ +NK SP
Sbjct: 868  KLPNGLAECVIGPNKLLDNSSTK--VYNSN--WNVLEEDGICRVGEMVAEDDIIVNKVSP 923

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            + TR  +  P+    S YR     YKG       +DRV L  +  G    K + R TR P
Sbjct: 924  INTREYVGDPSQVNLSEYRLTPIKYKGI--APSYIDRVLLTENSEGSHIYKIITRQTRLP 981

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKGV G IV QEDFPFSE G CPDLIMNPHGFPSRMTVGK++EL+  KA
Sbjct: 982  ELGDKFSSRHGQKGVVGLIVSQEDFPFSESGWCPDLIMNPHGFPSRMTVGKLMELISSKA 1041

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
             V  G + YG+AFG        VE  ++ L+++GF Y+GK+ + SGITG  ++ YIF+GP
Sbjct: 1042 SVLDGNYRYGTAFG-----GTPVEDAAKCLIQNGFHYSGKEYLTSGITGEAIETYIFVGP 1096

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            I+YQKL+HMVLDKMHARG GPR +LTRQPTEGR+++GGLR+GEMERDCL+AYGAS L+ E
Sbjct: 1097 IFYQKLRHMVLDKMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIE 1156

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM++SD FE  VC  CGL GY N+      C  C+N D+IS ++LPYACKLL QELQ+M
Sbjct: 1157 RLMLNSDVFETYVCNKCGLFGYNNY------CHYCRNSDDISIIRLPYACKLLFQELQAM 1210

Query: 1149 NIVPRLK 1155
            N+ PR+K
Sbjct: 1211 NVCPRIK 1217


>gi|170579233|ref|XP_001894738.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
 gi|158598542|gb|EDP36414.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
          Length = 1104

 Score = 1188 bits (3074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1155 (51%), Positives = 792/1155 (68%), Gaps = 71/1155 (6%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            +K+   V+++ DK+ L+P FL+VRGLVKQH+ S++YFV+T I+KI+RAND+I S  +PS 
Sbjct: 3    EKITGEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDKITSDANPSF 62

Query: 79   FLRFKDVRIGQPSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
            +L++ D+ +G PS     + +++K++PH CRL DMTY+API V+IEY +GS      + +
Sbjct: 63   YLKYLDIHVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQR----VLR 118

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
            N ++IG++P+MLRS +CVL   +E+ELAR+ ECP DPGGYFII+G+EKV+LIQEQLSKNR
Sbjct: 119  NGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVVLIQEQLSKNR 178

Query: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            ++I  + K  +   + SST+  KSKT I  +K + Y+  NQ    +PI ++ KAMG ESD
Sbjct: 179  IMIGRNSKKELQCEILSSTQERKSKTYIASKKQRYYVRHNQLSDDVPIAIIFKAMGFESD 238

Query: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPND-----R 311
             ++V  VG + ++ A + PSIEECA+  I TQE AL+Y+  KVK   FG   +      R
Sbjct: 239  HDIVSAVGLEEKFVAAMAPSIEECASHQIVTQEGALQYIASKVKIRKFGPATSGTSTLPR 298

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            E  A   L ++ +A+VP  + N + K  Y+ +M+RR+++A +     DD+D+ GNKRLEL
Sbjct: 299  EHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLEL 358

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L++LLFED+FK   SE+++  D  L K + ++  D+ + + +D IT  L   L+TGN
Sbjct: 359  AGSLLALLFEDVFKRFNSELKRIADNSLGK-TLAAPLDIVKHVRQDLITNALVDALATGN 417

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R+G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGMLCP D
Sbjct: 418  WTIKRFKMERQGVTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSD 477

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE+CGLVKNLAL++H+TTD +E P+I L Y  GVED++ L    +HNP   +V  NG
Sbjct: 478  TPEGESCGLVKNLALLSHITTDSDEKPVIRLLYNAGVEDVKSLHFSAIHNPAYHIVFLNG 537

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
            +I+G    P+     +R +RR G + EFVSV  N  QR VYIASDGGR+CRP +I    I
Sbjct: 538  VIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKNSI 597

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
             ++ + H++EL  G R F+DF+ +GLIEYLDVNE N+A IA+YE    P TTH+EIEPFT
Sbjct: 598  PQVTQEHIEELKKGYRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKPTTTHLEIEPFT 657

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+YLLVYPQRPL+ T+
Sbjct: 658  LLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTK 717

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIE   ++KL AGQNA +AVMSYSGYDIEDA+V+NK+SLDRG+GRC+V K   A  +KY 
Sbjct: 718  TIEFCNFEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYP 777

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DR++ P  T   A R  +  H      +LD +G+   G  I+   V INK  P+ +
Sbjct: 778  NQTFDRLMGP--TIEAATRKPIYKHQ-----VLDQEGIVYVGACIRSKQVMINKHMPVVS 830

Query: 852  --RGSIMSPT------GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
               G+ +S        G  +  Y+     Y+ P       +RV L  +++    +K    
Sbjct: 831  MEAGATVSNNDGTNIGGSHEVEYKDVSVVYRNP--VPSYAERVLLTYNEDDAHLVK---- 884

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
                                       ED PF++ G+CPD+IMNPHG+PSRMTVGK++EL
Sbjct: 885  ---------------------------EDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMEL 917

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            L GK  V  G+FHYG+AFG      D V+ + E L   GF+Y GKDM+ SGITG  L AY
Sbjct: 918  LSGKNAVLSGKFHYGTAFG-----GDQVDIVCEELAARGFNYLGKDMLTSGITGQQLSAY 972

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            I+ GPIYYQKLKHMVLDKMHAR  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGAS
Sbjct: 973  IYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGAS 1032

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
            ML+ ERLMVSSD F+V VC  CGL+GY         C  C++   ++++K+PYACKLL Q
Sbjct: 1033 MLLMERLMVSSDEFKVDVCSQCGLIGY------KSWCQMCRSSRTMATIKIPYACKLLFQ 1086

Query: 1144 ELQSMNIVPRLKLAE 1158
            ELQSMNIVP++ L++
Sbjct: 1087 ELQSMNIVPKISLSK 1101


>gi|389624163|ref|XP_003709735.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            70-15]
 gi|351649264|gb|EHA57123.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            70-15]
 gi|440467179|gb|ELQ36417.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae Y34]
 gi|440480743|gb|ELQ61392.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            P131]
          Length = 1158

 Score = 1187 bits (3072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1171 (51%), Positives = 798/1171 (68%), Gaps = 57/1171 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DK+QLLP FLKV+GLVKQH+DSFN+F+NT I++IV+AN  + S
Sbjct: 14   EPFYNGKKLTDPISTAQDKWQLLPAFLKVKGLVKQHIDSFNFFINTEIKEIVKANRIVRS 73

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDG---VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             ++   FL F D+R+G+P+           +++P  CRL DMTYAAPI V+I Y +    
Sbjct: 74   DVESGFFLEFTDIRVGKPNRAEYSDIKAQNEVSPMECRLRDMTYAAPIKVDIAYFR---- 129

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+PIML+S  C L G + AE+  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 130  DKKKVLRKNVTLGRMPIMLKSSNCWLSGANNAEMEDMNECPLDPGGYFIINGTEKVILIQ 189

Query: 190  EQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K N I+ASVTSST   KSKT + ++K ++ L  N  V+ IPI +++
Sbjct: 190  EQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTLKKERITLAHNTLVEPIPIAIIL 249

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK------R 301
            KA+G   D E++Q+V G D RY      + ++ A   ++TQ+++LEY+  +VK      +
Sbjct: 250  KALGGLPDHEIIQLVAGEDARYQDDFAVNFDDAARAGVFTQQQSLEYIGSRVKMGSNRFK 309

Query: 302  STFGSPP---NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
            +  G  P   N  EG     L ++ + +VP+ + +F PK  YVA+M+RR++ A  +   +
Sbjct: 310  TPGGQAPRRNNAEEG--LEALANMIIGHVPILDLDFYPKACYVAMMVRRVLMAAHDHKLV 367

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+VGNKRLEL+GQ++SLLFEDLFK  + +++  +D +L K +R   FD    I   S
Sbjct: 368  DDRDFVGNKRLELAGQMLSLLFEDLFKKFLVDLRFNIDKVLRKSNRGVAFDPLNSITATS 427

Query: 419  --ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT G+ R +S+GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGP
Sbjct: 428  GHITAGMNRAISSGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGP 487

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELL 534
            RALQPSQWGMLC  DTPEGEACGLVKNLALMTH+TT  EE P+      +  G E L   
Sbjct: 488  RALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTHFEEDPVKEWILAMDSGAEALSNF 547

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            SG E+H P +F++  NG        P+ F    R  RR G++  FVS+ +N     V IA
Sbjct: 548  SGSEMHTPGTFVITVNGTPFALTWNPEEFCKKFRDTRRKGELSAFVSISINYHFATVNIA 607

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            +D GR+CRP +I + G+ RIKE H++ L  G + FD FL  G++EYLDVNEE + L+ALY
Sbjct: 608  TDEGRICRPYIIIENGVQRIKEEHLESLRQGDKDFDYFLNNGIVEYLDVNEEQDTLVALY 667

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            E D TP  TH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D
Sbjct: 668  EKDVTPAHTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRID 727

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            +LLY LVYPQRP++ T+TIEL+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGF
Sbjct: 728  TLLYTLVYPQRPMVITKTIELIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGF 787

Query: 775  GRCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            GRC V +K+TA  Q YAN+ S++I  P   +RTG  AE+   +          D DGLA 
Sbjct: 788  GRCQVFRKHTAELQTYANNKSEKISGPEIDERTGKPAEKYAAI----------DSDGLAR 837

Query: 832  PGEIIKPNDVYINKESPLETRGS--IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             G  I   +V + K +P++ +GS  I +  G  D R  S       P      +D+V + 
Sbjct: 838  VGYRIHSGEVMLRKLTPID-QGSTGIGNDVGSNDYRETSLSYRVSNP----SYIDKVMVS 892

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
              +   +  K   R TRRPELGDKFSSRHGQKGV G IV+QED PF++ G+ PD+IMNPH
Sbjct: 893  QTEKEHILAKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDMPFADSGLVPDIIMNPH 952

Query: 950  GFPSRMTVGKMIELLGGKAGVSCG--RFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            GFPSRMTVGK+ E L GKA +  G  R+ YG AF      +  VE + + L++ GFS+ G
Sbjct: 953  GFPSRMTVGKLFECLTGKASIVEGNRRYGYGDAF-----RSHPVEEMGKALIERGFSWEG 1007

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
            KD   SGITG PL+AY+F GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGL
Sbjct: 1008 KDYFTSGITGEPLEAYLFNGPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDGGL 1067

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R+GEMERDCLIAYGAS L+ ERLM+SSD  ++ +C+ CGL GY       G C TCK+  
Sbjct: 1068 RLGEMERDCLIAYGASQLLLERLMLSSDATKIDICQRCGLFGY------KGYCQTCKSTK 1121

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             ++ M +PYA KLL+QEL SMN+  RL L +
Sbjct: 1122 EVTEMTMPYAAKLLVQELISMNVGVRLVLED 1152


>gi|402076059|gb|EJT71482.1| hypothetical protein GGTG_10739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1158

 Score = 1187 bits (3072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1170 (51%), Positives = 796/1170 (68%), Gaps = 54/1170 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DK+QLLP FLKV+GLVKQH+DS+N+F+N  I++IV AN  + S
Sbjct: 13   EPFYNGKKLTDPISTAKDKWQLLPAFLKVKGLVKQHIDSYNFFINHEIKEIVNANRIVRS 72

Query: 73   GIDPSIFLRFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             ++   FL F D+R+G+PS    T      +++P  CRL DMTYAAPI V+I Y +    
Sbjct: 73   DVESGFFLEFTDIRVGKPSRAEFTDFKAHNEVSPMECRLRDMTYAAPIKVDIAYFR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+PIML+S +C L G   +E+  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DKKKVIRRNVTLGRMPIMLKSSQCWLSGATNSEMEDMNECPLDPGGYFIINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K NI  ASVTSST   KSKT + ++K ++ L  N  V+ IPI++V+
Sbjct: 189  EQLSKNRVIVEADEKNNIITASVTSSTHERKSKTYVTLKKERISLNHNTLVEPIPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--- 304
            KA+G   D E++Q+V G D RY      + +E     ++TQ +ALEY+  +VK  +    
Sbjct: 249  KALGGLPDYEIMQLVAGEDARYQDDFAVNFDEATRAGVFTQHQALEYVGVRVKAGSIRTK 308

Query: 305  -----GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
                 G    +        L ++ + +VP+   +F PK  YVA+M+RR++ A  +   +D
Sbjct: 309  MPGSGGMARRNNTEEGLEALANMIIGHVPIVGLDFYPKAIYVAMMVRRVLMAAQDFKLVD 368

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS- 418
            D+D+VGNKRLEL+GQ++SLLFEDLFK  I++++  +D +L K +R   FD    I   S 
Sbjct: 369  DRDFVGNKRLELAGQMLSLLFEDLFKKFITDLRFNIDKVLRKSNRGVPFDPLNSITATSG 428

Query: 419  -ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
             IT G+ R++S+GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPR
Sbjct: 429  HITAGMNRSISSGNWSVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPR 488

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLS 535
            ALQPSQWGMLC  DTPEGEACGLVKNLA+MTH+TT   E P+      L  G E L   S
Sbjct: 489  ALQPSQWGMLCTSDTPEGEACGLVKNLAMMTHITTQFPEEPVKQWILSLDSGAESLINFS 548

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
            G E+H P S++V  NG        P+ FA   R +RR G +  FVS+ +N     V IA+
Sbjct: 549  GSEMHRPGSYMVNVNGTPFALTANPEEFARKFRTMRRRGFLSPFVSININYHFSTVNIAT 608

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            D GR+CRP +I   G+  +++ H++ L  G   FDDFL +G++EYLDVNEEN+ L+ALYE
Sbjct: 609  DEGRICRPYIIVQNGVPNVRDEHLEMLRQGRAQFDDFLNKGIVEYLDVNEENDTLVALYE 668

Query: 656  GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             D TP  TH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+
Sbjct: 669  KDVTPAHTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDT 728

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            LLY LVYPQRP++ ++TIEL+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFG
Sbjct: 729  LLYTLVYPQRPMVISKTIELIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFG 788

Query: 776  RCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            RC V +K+TA  Q YAN+ S+ I RP   + TG   ++           + +D DGLA  
Sbjct: 789  RCQVFRKHTAELQTYANNRSEEIGRPEIDEATGRHTDKN----------VAIDGDGLATV 838

Query: 833  GEIIKPNDVYINKESPLETRGS--IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 890
            G  I   +V I K +P++ +GS  I +  G  D  YR    +Y+ PD     +D+V +  
Sbjct: 839  GYRIHAGEVMIKKLTPID-QGSTGIGNDVGSND--YRDTSISYRTPD--PSYIDKVMVSQ 893

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
             +   + +K   R TRRPELGDKFSSRHGQKGV G IV QED PF + G+ PD+IMNPHG
Sbjct: 894  TEKEHILVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFQDSGLVPDIIMNPHG 953

Query: 951  FPSRMTVGKMIELLGGKAGVSCG--RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            FPSRMTVGK+ E L GKA V  G  R+ YG AF         VE + E LV+HGFS+ GK
Sbjct: 954  FPSRMTVGKLFECLTGKASVVEGEKRYGYGDAF-----RTHPVEEMGEALVRHGFSWEGK 1008

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            D   SGITG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR
Sbjct: 1009 DYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDGGLR 1068

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDN 1128
            +GEMERDCLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G C TCK+   
Sbjct: 1069 LGEMERDCLIAYGASQLLLERLMLSSDATSIDICQRCGLFGY------KGYCQTCKSTRE 1122

Query: 1129 ISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            +++M +PYA KLL+QEL SMN+  RL+L +
Sbjct: 1123 VTAMTMPYAAKLLVQELISMNVGVRLQLED 1152


>gi|219116230|ref|XP_002178910.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409677|gb|EEC49608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1211

 Score = 1187 bits (3070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1174 (51%), Positives = 821/1174 (69%), Gaps = 60/1174 (5%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND--RIVSGIDPSIFL 80
            APV S+ DK++LLP FL++R L++QH+DSF++FV+  +++IV++     I S  DP  +L
Sbjct: 59   APVGSLRDKWRLLPYFLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEHDPKFYL 118

Query: 81   RFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            R++   +G+PS+  D  S K   P  CRL D TY+API VN+ Y +G    +  + K  V
Sbjct: 119  RYEACWVGEPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVRYTRG----RQIVVKRKV 174

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
            +IGR+PIMLRS +C+L  + E +LA + ECP DPGGYF+IKG EKV+LIQEQLSKNRVI+
Sbjct: 175  MIGRMPIMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVIL 234

Query: 200  DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            + D KG I AS+TSST   KSK  I ++ G++YL  N     IP+ VV+KAMG+ESD E+
Sbjct: 235  EEDNKG-IMASITSSTHERKSKAYILIKNGRVYLKNNTLGDDIPVAVVLKAMGIESDLEL 293

Query: 260  VQMVGRD-PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFG-----------SP 307
            VQ+VG + P  +AL L S+EE + L I+TQ +AL ++  K++  +             SP
Sbjct: 294  VQLVGSESPIINALAL-SLEEPSRLGIHTQAQALRFIGAKIRGRSGPSGPSSSYRKNVSP 352

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
                E  A  +L +V L++VPV + +FR K  Y+  ++RR++   L K  +DDKDY GNK
Sbjct: 353  ----EDEAREVLANVVLSHVPVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDYYGNK 408

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTL 427
            RLEL+G L+SLLFEDLFK    ++++  D++LSKP+R+  FD+ + I  D+IT G+   +
Sbjct: 409  RLELAGNLLSLLFEDLFKIFNKDLKRQADLVLSKPNRTQAFDVVKTIRPDTITNGMINAI 468

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            +TGN+ +KRF+M R G+TQVL+RLS++  LG MTR++ QFEK+RKVSGPR+LQPSQWGML
Sbjct: 469  ATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGML 528

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEG-PLISLCYCLGVEDLELLSGEELHNPNSFL 546
            CP DTPEGEACGLVKNLAL+ H+TTDE +  P+  +C  LGVED++ ++G E+++  +FL
Sbjct: 529  CPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFL 588

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NGLILG H RP+     +RK+RR G  GEFVSV+++++Q  V+IA+DGGRVCRPL+I
Sbjct: 589  VFLNGLILGVHTRPRELVRNLRKMRRRGLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLI 648

Query: 607  ADK--GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-- 662
             D+  G+ ++++ HM+ L  G     D +R+G++EY+D NEENN LIA+ E D       
Sbjct: 649  VDEETGLPKLQQIHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILH 708

Query: 663  ---------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
                     TH+E++PFTILGV+ G+IP+PHHNQSPRNTY  AM KQAMG+++ NQ  RM
Sbjct: 709  GLETRKMRYTHLEVDPFTILGVVGGIIPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERM 768

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D L+Y L+YPQ+P++ +RT++LV +D +  G NA +AVMSYSGYDIEDAI++NK+++DRG
Sbjct: 769  DGLIYTLIYPQKPMVKSRTLDLVNFDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRG 828

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGP---GAERMQVVHHSNLLLLILDDDGLA 830
            FGRC+V++K+    ++YAN T DR   P   G    G +  +   +     + +D DG+ 
Sbjct: 829  FGRCMVLRKHQTSVRRYANGTMDRTCAPPDPGSFPDGEDDKRFARY-----MAIDKDGIC 883

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG------ETCVVD 884
              GE I+   V +NKESP +T  ++       +S    A   YK P G       +  VD
Sbjct: 884  RVGEKIENGSVMVNKESPADTTSNMAGVDFGFNSGMSMAHLNYK-PSGVSYRGSASTYVD 942

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V + S++N    IK ++R  RRPE+GDKF+SRHGQKGVCG IV +ED PF+E G  PDL
Sbjct: 943  KVLITSNENEQFLIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDL 1002

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            IMNPHGFPSRMTVGK++ELL GKAG+  GR  Y SAFGE  G ADT +S SE L+++G +
Sbjct: 1003 IMNPHGFPSRMTVGKLLELLVGKAGLYEGRQGYSSAFGEEFGSADTAQSASEALLRNGLN 1062

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            Y GKD++YSG  G PL AYIF GP++YQKLKHMVLDK HAR  GPR +LTRQPTEGR+R+
Sbjct: 1063 YTGKDILYSGTNGEPLDAYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRD 1122

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR+GEMERDCLIAYG S LI ERLM SSD F   VC  CGLL Y       G C  C+
Sbjct: 1123 GGLRLGEMERDCLIAYGVSNLIMERLMHSSDAFSANVCLTCGLLQY------EGWCQYCR 1176

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            +G+ ++ ++LPYACKLL QELQSMN++PRL+L +
Sbjct: 1177 SGEKVADIRLPYACKLLFQELQSMNVLPRLRLQD 1210


>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
 gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score = 1185 bits (3066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1150 (52%), Positives = 788/1150 (68%), Gaps = 46/1150 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK +GLVKQH+DS+N+FV+  ++KI++AN  + S  DP  
Sbjct: 324  KSLTDPINTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKANRFVRSDFDPKF 383

Query: 79   FLRFKDVRIGQPSMT----VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
             L + D+R+  P+      +D     + P+ CRL DMTYAAPI+V+I Y +GS   K T 
Sbjct: 384  LLEYTDIRVLSPNRQEEDDLDNHRSTVTPNECRLRDMTYAAPIVVDIVYTRGSAKVKRT- 442

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
                + IGR+PIML+S +CVL  K++ E+A + ECPLDPGGYFI +G EKV+L+QEQL+K
Sbjct: 443  ---GIKIGRMPIMLKSNKCVLAAKNDREMAVMDECPLDPGGYFITRGQEKVILVQEQLNK 499

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG + ASVTSST   ++KT +  +KG M+L  N   +++PI+ V+KA+G+ 
Sbjct: 500  NRVIVES-AKGIMQASVTSSTHERRTKTYVIQKKGLMFLRHNTLSEEVPIVFVLKALGVH 558

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV---KRSTFGSPPND 310
            SD+E++ M+ G D  Y      + E CA   I+TQEKALEY+  +V   K+    S   +
Sbjct: 559  SDKEILLMIAGTDAAYQDSFAINFEACAREGIHTQEKALEYIGHRVRLVKKPLGTSRMRN 618

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
                A   L +V L +VPV   N+RPK  YVA+M RR++ AM +   +DD+DYVGNKRLE
Sbjct: 619  YHLEAIECLANVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLE 678

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIV-RDSITVGLERTLS 428
            LSGQ++SLLFED FK    + + ++D +L K +R+  FD  S F V ++ IT+G+ER ++
Sbjct: 679  LSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQNRAQEFDAFSHFSVHKNHITMGIERAIA 738

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 739  TGNWSLKRFKMDRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 798

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              DTPEGEACGLVKNLALMTH+TT+++E P+  + + LG E++   +GEE+H    + V 
Sbjct: 799  TSDTPEGEACGLVKNLALMTHITTEDDEDPVRKIIFLLGAEEICSQTGEEIHREGVYSVC 858

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +     PK F +  RKLRR G+I EF S+ +N     V++A+D GR+CRP+++ +
Sbjct: 859  LNGTPIAITDIPKRFLNSFRKLRRMGRISEFTSIHINHDFCEVHVATDEGRICRPMIVVE 918

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
               S++   ++K L  G   F+DFL  GL+EYLD NEEN+  IAL E D    TTH+EIE
Sbjct: 919  NQRSKVTGRYLKALRKGTMEFEDFLTRGLVEYLDTNEENDTNIALKETDINQHTTHLEIE 978

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D++LYL+VYPQ P++
Sbjct: 979  PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTILYLMVYPQEPMV 1038

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL  YDKL AGQNATVAVMSYSGYDIEDA+++NK+S DRGFGRC V+KK +   +
Sbjct: 1039 KTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKVSHQLK 1098

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
             YAN TSDRI        GA ++    H       +  DG+A  G  I   D ++ K  P
Sbjct: 1099 SYANGTSDRI------NAGALKVDDPTHQ-----AIGQDGIAQVGARINQGDAFLLKAIP 1147

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
             +T G    P   T   Y+   + YK PD     +D+V +  ++ G   IK L R TRRP
Sbjct: 1148 QDTAG----PPSTT---YKDKPEKYKLPD--CSYIDKVCITENEAGTTLIKILNRQTRRP 1198

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ELGDKFSSRHGQKG  G IVQQED PF+++GI PD+IMNPHGFPSRMTVGKM+ELL GKA
Sbjct: 1199 ELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKA 1258

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            GV  G   YG+AFG        VE +++ LV  GFSY GKD + SGITG   Q Y F GP
Sbjct: 1259 GVLNGTLEYGTAFG-----GSRVEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTFFGP 1313

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            IYYQKLKHMV DKMHAR  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYGAS L+ E
Sbjct: 1314 IYYQKLKHMVQDKMHARARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLE 1373

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLM+SSD   V VC  CG +GY      +G C  C++   +  + +PYA KLLIQEL SM
Sbjct: 1374 RLMISSDAHNVDVCEKCGQMGY------SGYCKLCESEKAVRRITMPYAAKLLIQELGSM 1427

Query: 1149 NIVPRLKLAE 1158
            N+   + LA+
Sbjct: 1428 NVKVTIGLAD 1437


>gi|320593507|gb|EFX05916.1| DNA-directed RNA polymerase beta [Grosmannia clavigera kw1407]
          Length = 1165

 Score = 1184 bits (3062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1175 (51%), Positives = 803/1175 (68%), Gaps = 57/1175 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DK+QLLP FLKV+GLVKQH+DS+N+FV   I+ IV AN  I S
Sbjct: 13   EPFYNGKKLTDPISTKDDKYQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVTANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMT--VDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             +    +L F D+R+G+P+ T   D  S+ ++ P  CRL DMTYAAPI+V+I Y +    
Sbjct: 73   DVQSGFYLEFTDIRVGRPTRTDFSDIKSQNEVTPMECRLRDMTYAAPIVVDIAYTR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + ++ +GR+P+ML+S +C L G   +++  + ECPLDPGGYFI+ GTEKV+LIQ
Sbjct: 129  DKKRIIRRNITLGRMPVMLKSSKCCLSGATNSQMEVMNECPLDPGGYFIVNGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI+++++K G I+ASVTSST   KSKT + ++K ++ L  N  V  IPI++V+
Sbjct: 189  EQLSKNRVIVESEEKNGVISASVTSSTHERKSKTYVTLKKERIALQHNVLVDNIPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST---- 303
            KA G  +D E++Q+V G D RY      + +E A + ++TQ++ALEY+  +VK  T    
Sbjct: 249  KAFGGLTDYEIMQLVAGSDGRYQDDFAINFDEAAKMGVFTQQQALEYVGARVKMGTRNGG 308

Query: 304  -------------FGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVE 350
                           +  N+ E      L ++ +A+VP+   +F PK  YVA+M RR++ 
Sbjct: 309  GPGGGPGGMRPMGPPTKRNNVE-EGLDALANIIIAHVPIDGLDFFPKAVYVAMMARRVLM 367

Query: 351  AMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD- 409
            AM N   +DD+D+VGNKRLEL+GQL+SLLFEDLFK   S+++  +D    KP +   FD 
Sbjct: 368  AMHNPQLVDDRDFVGNKRLELAGQLLSLLFEDLFKKFQSDLRFNIDKFFKKPHQGVAFDP 427

Query: 410  -LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
              S       I+ G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFE
Sbjct: 428  LTSISATGHHISQGMNRAIQTGNWSVKRFGMNRGGVTHVLSRLSYISALGMMTRISSQFE 487

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL-- 526
            K+RKVSGPRALQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT  EEGP+ +  + L  
Sbjct: 488  KTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTHVEEGPVRAWVFSLDD 547

Query: 527  GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE 586
             VE L   SG E+H    ++V  NG        P+ F    R +RR G I  FVS+ +N 
Sbjct: 548  SVEPLRNFSGAEMHRAGWYVVHVNGTPYALTPNPRRFCARFRTMRRRGWISPFVSININS 607

Query: 587  KQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEE 646
                V+IA+D GR+CRP +I   G SR++  H++ L  G  +FDDFLR G+IEYLDVNEE
Sbjct: 608  HFASVHIATDEGRICRPYIIVKNGQSRLRAEHLRLLQQGRVTFDDFLRRGVIEYLDVNEE 667

Query: 647  NNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
             +AL+ALYE D T  +TH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA
Sbjct: 668  QDALVALYEADCTAASTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIA 727

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
            +NQ  R+D+LLY LVYPQRP++ T+TIELV YDKL AGQNATV VMSYSGYDIEDA+V+N
Sbjct: 728  YNQFHRIDTLLYTLVYPQRPMVATKTIELVHYDKLPAGQNATVVVMSYSGYDIEDALVLN 787

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            K+S+DRG+GRC V +KY A  Q++ N  ++R+  P+R   G    ++  H+      +D+
Sbjct: 788  KASIDRGYGRCQVFRKYVAEMQRFPNGRTERVGGPERDKDGE---KISKHA-----AIDN 839

Query: 827  DGLAAPGEIIKPNDVYINKESPLE-TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DGLAA G  ++  DV I KESP++ T   I +  G  +  YR +  TY+  D     VD+
Sbjct: 840  DGLAAVGWRVQHGDVMIKKESPVDLTTTGIGADRGSNE--YRDSSLTYRIND--PSYVDK 895

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V +   +   L  K   R TRRPE+GDKFSSRHGQKGV G IV+QED PF++ G+ PD+I
Sbjct: 896  VMVSQTEKDTLIFKVQTRQTRRPEIGDKFSSRHGQKGVVGIIVEQEDMPFADSGLVPDII 955

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGR--FHYGSAFGEPSGHADTVESISETLVKHGF 1003
            MNPHG+PSRMTVGK+ E L GKA V  GR  + YG AF      +  VE++ E LV+HGF
Sbjct: 956  MNPHGYPSRMTVGKLFECLTGKASVVAGRRDYGYGDAF-----RSHPVEAMGEELVRHGF 1010

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
            S+ GKD   SG TG P++A+IF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R
Sbjct: 1011 SWAGKDCFTSGTTGEPMEAHIFNGPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSR 1070

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR+GEMERDCLIAYGAS L+ ERLM SSD   + +C+ CGL GY       G C TC
Sbjct: 1071 DGGLRLGEMERDCLIAYGASQLLLERLMFSSDATSLDLCQHCGLFGY------KGYCQTC 1124

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            ++  +++ M +PYA KLL+QEL SMN+  RL+L +
Sbjct: 1125 RSTRDVTQMTMPYAAKLLVQELISMNVGVRLQLED 1159


>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1159

 Score = 1183 bits (3061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1164 (52%), Positives = 798/1164 (68%), Gaps = 69/1164 (5%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRFKD 84
            +  DK++LLP FL+ RGLVKQH+DSFNYFV T I+ IV A  N RI S +DP+ FL + D
Sbjct: 28   TWADKWELLPAFLEARGLVKQHIDSFNYFVTTEIKDIVLAESNRRITSDVDPNWFLEYHD 87

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
            VR+G PS        +  P MCR+ DMTYA+ ILV+I YV+G    +  + KN V +GR+
Sbjct: 88   VRVGAPSYRGVLQHVQTTPMMCRIRDMTYASDILVDISYVRG----REVVRKNGVCVGRL 143

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C L+     ++ R+ ECP DPGGYFIIKGTEKVLL+QEQLS NR+I++ D K
Sbjct: 144  PIMLRSKLCRLHDATTEQMERMQECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVEMDPK 203

Query: 205  GNINASVTSSTETVKSKTVI--QMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
              + A VTSST   KS+TV+  + E   +++  + F + IP +++++AMGMESDQE+VQM
Sbjct: 204  KLVQAVVTSSTADNKSRTVVCFKSELSGLFVKHSAFTELIPAVIMLRAMGMESDQEIVQM 263

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPPNDREGRAFS 317
            VG +  +   ++ S+++     +++Q++ALEYL  K+K       +F S  +  +G A  
Sbjct: 264  VGTEKCHVDGMILSLQDAHATGVFSQQQALEYLGNKLKIRMYADGSFSSAFDQDKGGATK 323

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             L             +F  KC ++ +M+RR ++A  +   +DD+DY GNKRLEL+GQL++
Sbjct: 324  PL-------------DFSGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELAGQLIA 370

Query: 378  LLFEDLFKTMISEVQKTVDIILSK------PSRSSRF---------DLSQFIVRDSITVG 422
            LLFEDLFK+M +E++K+VD+ L+K       +R+ R          D+ + I  + IT G
Sbjct: 371  LLFEDLFKSMNTEIKKSVDMRLTKFFQQTSSARAGRSTVGLDSGYPDVLRDIDSERITRG 430

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            + R +S+GN+++KRF++ R G++QVL+R SFI  LG MTRV  QFEKSRK++GPRALQPS
Sbjct: 431  MNRAISSGNWNIKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQFEKSRKLAGPRALQPS 490

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
            QWGMLCP DTPEGE CGL+K L+L+ HVTT +EEGP+  LCY LGVED   L+GEELH+ 
Sbjct: 491  QWGMLCPSDTPEGEQCGLIKALSLLAHVTTPDEEGPIRRLCYSLGVEDAAGLTGEELHSA 550

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
             +  V  NG +LG HRRP+ F   MR LRR GKIGEFVS++ +E QR + IA+DGGR+CR
Sbjct: 551  GTITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIGEFVSIYEHEAQRAIIIATDGGRLCR 610

Query: 603  PLVIADKGISRIK-EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD 661
            PL++  KG   +K E H+++L  G   F DFLR G+IE++DVNEENN+ IA+   D T +
Sbjct: 611  PLIVVKKGKPMLKPEVHLRKLRSGELRFTDFLRLGIIEWVDVNEENNSYIAINPEDVTME 670

Query: 662  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721
            +TH+EIEP T+LG +AGL+PYPHHNQSPRNTYQCAMGKQAMGNIA NQ  R D+ L LL 
Sbjct: 671  STHLEIEPLTLLGAVAGLVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLT 730

Query: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
            YPQ+P+  +RTI+L+GYD L AG NA+VAVMSYSGYDIEDA++MNK+S+DRGFGRC V +
Sbjct: 731  YPQQPMCKSRTIDLIGYDNLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTR 790

Query: 782  KYTAINQKYANSTSDRILRPDRTGPGAERMQVV---------HHSNLLLLILDDDGLAAP 832
            KY     + A  +S+ +  P   G G +               H +    I+D+DGL   
Sbjct: 791  KYATPLARSAIGSSEELRAPPVVGGGGKGGGRHQRQGGSVADKHCSCRYAIIDEDGLPFS 850

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            GE +    + INK SP+       + TGQ  S +R    +YK P      VDRV    ++
Sbjct: 851  GEQVVDGGILINKVSPMSD-----AATGQV-SHWRDTPISYKNP--VPSYVDRVIATENE 902

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +     K + R TRRPELGDKFSSRHGQKGV G IV QED PF E+G CPDLIMNPHGFP
Sbjct: 903  DQAKIFKCITRQTRRPELGDKFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGFP 962

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMTVGK++E + GKAGV  G   YG+AFG       T E ++++L++HGF  + K+ I 
Sbjct: 963  SRMTVGKLLECVSGKAGVLDGERSYGTAFG-----GTTKEHMTQSLIRHGFHPSAKEYIT 1017

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            SG+TG  L+ YIF+GPIYYQKLKHMV+DK+HAR +GP   LTRQPTEGRA++GGLR+GEM
Sbjct: 1018 SGVTGEALECYIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPTEGRAKDGGLRLGEM 1077

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERDCL+AYGAS L+ ERLM+SSD F   VCR CGLL Y N     G C  C   +NI  +
Sbjct: 1078 ERDCLVAYGASNLLLERLMLSSDVFTASVCRRCGLLSYQN-----GTCKLCGTSENIVDI 1132

Query: 1133 KLPYACKLLIQELQSMNIVPRLKL 1156
            ++PYACKLL QELQ+MN+ PRLK+
Sbjct: 1133 RMPYACKLLFQELQAMNVCPRLKV 1156


>gi|332017159|gb|EGI57958.1| DNA-directed RNA polymerase III subunit RPC2 [Acromyrmex echinatior]
          Length = 1113

 Score = 1182 bits (3059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/1135 (51%), Positives = 788/1135 (69%), Gaps = 31/1135 (2%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            DK++L+  FL+ +GLV QH+DS+NYF+N  I+ IV+AN+++ S  DP  +L++ ++++G 
Sbjct: 1    DKWKLVAAFLRNKGLVNQHIDSYNYFINEEIKNIVKANEKVQSDEDPHFYLKYLNIKVGL 60

Query: 90   PSMTVDGVSEKL---NPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            P +     S +     PH CRL D+ Y+A I+V++EY++ +      + ++++VIG++PI
Sbjct: 61   PEVQESSNSIRTIPTTPHECRLRDLNYSASIIVDVEYIRSNQR----IIRHNMVIGKMPI 116

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            MLRS  CVL  K E+ELA++ EC  D GGYFII G EKV+LIQEQ+ +NR+I++ D K  
Sbjct: 117  MLRSSNCVLTKKSESELAKMNECLYDSGGYFIINGQEKVILIQEQMVRNRIILEEDSKNC 176

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I A+  S T   K+KT +  + GK Y+  N F   I I ++ KAMG+ SD E++QMVG  
Sbjct: 177  IVAACNSFTHDKKTKTNVVGKTGKYYIRHNMFQDDILITIIFKAMGIVSDLEIMQMVGTQ 236

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLAN 326
              Y      S+E+C  L I++Q +AL+YL  K K+  F  P +        +L    L++
Sbjct: 237  ETYLNKFAASLEDCQELGIFSQNQALKYLNNKRKQMRFHVPKSHVTDEMKDVLATNILSH 296

Query: 327  VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKT 386
            VPV + NFRPK  Y+A+M+RR++ A  +   +DDKDY GNKRLEL+G L++L+FEDLFK 
Sbjct: 297  VPVVDFNFRPKALYLALMIRRVINAQSDHSLIDDKDYYGNKRLELAGSLLALMFEDLFKR 356

Query: 387  MISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQ 446
               E++K  +  + K ++++ FD+   +  D IT GL   +S+GN+ +KRF+M R G+TQ
Sbjct: 357  FNWELKKIANKNIPK-TKAAAFDIVNHMRHDLITNGLVFAISSGNWTIKRFRMERHGVTQ 415

Query: 447  VLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
            VL+RLS+I  LG MTRV  QFEK+RKVSGPR+LQ SQWGMLCP DTPEGEACGLVKNLAL
Sbjct: 416  VLSRLSYISALGMMTRVHSQFEKTRKVSGPRSLQGSQWGMLCPNDTPEGEACGLVKNLAL 475

Query: 507  MTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADV 566
            M H+TT+  E  +I L   LGVE++  L+GEEL + + + V  NG+++G  +  K     
Sbjct: 476  MAHITTEVPEELIIKLVLNLGVENIYTLAGEELTSEDIYSVFVNGIMVGIVQNHKRLVRQ 535

Query: 567  MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV 626
             R LRR G I  FVS++   + +C+ I+SDGGR+CRPL+I     S +K  H++ L   +
Sbjct: 536  FRLLRRRGYINSFVSIYTQHRHKCIQISSDGGRLCRPLIIVKNAKSLVKPKHIENLERNI 595

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
             SF+DFL +GLIEYLDVNEEN++LIA  E +   +TTH+EI  FTILGV AGLIPYPHHN
Sbjct: 596  TSFEDFLYDGLIEYLDVNEENDSLIACTESEINENTTHLEIAEFTILGVCAGLIPYPHHN 655

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQCAMGKQAMG I +NQ  R+D+++Y LVYPQ P++ TR IEL+ YDKL AG+N
Sbjct: 656  QSPRNTYQCAMGKQAMGIIGYNQRNRIDTVMYNLVYPQTPIVKTRAIELINYDKLPAGEN 715

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VAVMSYSGYDIEDA++ NK+S+DRG+GRC+V +    I +KYAN T D I+ P     
Sbjct: 716  AIVAVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCILKKYANRTQDTIMGP--MLD 773

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE--SPLETRGSIMSPTGQTDS 864
            G  +  +  H      +LD DG+  PGE+++   V +NK   +P E  G + S T QT +
Sbjct: 774  GNTKKPITKHE-----VLDVDGIVLPGEMVENKTVMVNKSVPTPSENIGPVSSGTIQTQA 828

Query: 865  -RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
              YR+A   +KG       V++V + S+ +     K L+R TRRPE+GDKFSSRHGQKGV
Sbjct: 829  VEYRNAEIPFKGM--VPAYVEKVIVTSNADDCFLTKLLLRQTRRPEIGDKFSSRHGQKGV 886

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+FH  +AFG 
Sbjct: 887  IGLIVEQEDMPFNDHGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVVNGKFHDATAFG- 945

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
                   VE I E L K+G++Y GKD  Y+G+TG PL  YI+ GP+YYQKLKHMV DKMH
Sbjct: 946  ----GAKVEDIREELAKNGYNYLGKDFFYNGMTGKPLIGYIYSGPVYYQKLKHMVQDKMH 1001

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GPRV+LTRQPTEGR+R GGLR+GEMERDCLI YGASML+ ERLM+SSD F+V VC 
Sbjct: 1002 ARARGPRVVLTRQPTEGRSREGGLRLGEMERDCLIGYGASMLLVERLMISSDAFKVDVCN 1061

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             CGL+GY       G C  CK+  ++S++ +PYACKLL QELQSMN+VPRL L +
Sbjct: 1062 KCGLIGY------NGWCQRCKSSSSVSTITMPYACKLLFQELQSMNVVPRLSLKD 1110


>gi|357610728|gb|EHJ67119.1| hypothetical protein KGM_22531 [Danaus plexippus]
          Length = 1085

 Score = 1179 bits (3050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1104 (53%), Positives = 770/1104 (69%), Gaps = 58/1104 (5%)

Query: 61   RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILV 119
            +KIV+AN+++    DP  ++++ +  +G P +     V++   PH CRL DMTY+API V
Sbjct: 28   KKIVQANEKVFCDSDPLFYIKYLNAYVGTPDLEEGFNVTKPTTPHECRLRDMTYSAPITV 87

Query: 120  NIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
            +IEY++G+   +  + KN  +IGR+P+MLRS  CVL  K + ELA+L ECP DPGGYFII
Sbjct: 88   DIEYIRGN---QRVIFKNKQLIGRMPLMLRSSNCVLTNKSDFELAQLNECPHDPGGYFII 144

Query: 180  KGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFV 239
            +G EKV+LIQEQLS+NR+I+D + KG I   VTSST   K++T++ ++ GK  L  N   
Sbjct: 145  RGQEKVILIQEQLSRNRMIVD-EFKGAIQCQVTSSTHEKKTRTIVIVKNGKYVLRHNALS 203

Query: 240  KKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
              IPI VV KAMG+ SDQE++Q+VG D   +  + P I +C NL ++TQ +AL Y+  K+
Sbjct: 204  DDIPICVVFKAMGICSDQEIMQLVGTDDAIAKKMAPCIMDCHNLKVFTQNQALAYIGSKL 263

Query: 300  KRSTFGSPPNDRE---GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            K   F S  +        A  ++    LA+V V N NF  K  Y+A+M++R++EA  NK 
Sbjct: 264  KVKRFQSATSKFRTPVDEARDLIATTILAHVVVENYNFYVKAIYLAIMVKRVIEAETNKA 323

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
            A+DD DY GNKRLEL+G L++L+FEDLFK    E++   D I+ +  +++ FD       
Sbjct: 324  AIDDPDYYGNKRLELAGSLLALMFEDLFKRFNWELKSIADKIIPR-VKAAPFD------- 375

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
                         GN+ +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGP
Sbjct: 376  -------------GNWTIKRFKMERHGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 422

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+  EGP+  L    GVED+ LL G
Sbjct: 423  RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTECSEGPISRLACNAGVEDVRLLGG 482

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
            EE+++P  ++V  NG ILG  R  K    + R  RR G I  FVS++ N  QR VYI SD
Sbjct: 483  EEINHPALYMVFLNGNILGVTREYKKLIKIFRMFRRRGLISAFVSIYPNHNQRTVYICSD 542

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
            GGR+CRP +I +KG+  +++HH+ EL  G+R F DFL +GLIEYLDVNEEN++ IA  E 
Sbjct: 543  GGRLCRPYIIVEKGLPLVQQHHINELNRGIRKFQDFLNDGLIEYLDVNEENDSHIATVET 602

Query: 657  DATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
            +  P  TTH+EIEPFTILGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+
Sbjct: 603  EIDPYVTTHLEIEPFTILGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRIDT 662

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L+Y LVYPQ P++ TRTIEL  +DKL AGQNATVAVMSYSGYDIEDA+++N++S+DRG+G
Sbjct: 663  LMYNLVYPQCPMVKTRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNRASIDRGYG 722

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            RC+V K    I ++Y+N TSDRIL P R     + ++  H       +LD DG+AAPGE+
Sbjct: 723  RCLVYKSAKTIMKRYSNQTSDRILGPSRDANTGKVIK-AHE------VLDSDGIAAPGEM 775

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDK 892
            ++   V INK+ P  T    ++P  Q   +   Y+    TYKGP      +++V + S+ 
Sbjct: 776  VENRQVLINKQMPPAT----LNPINQGQPQQIDYKDVPITYKGP--VESYIEKVMVSSNS 829

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
                 IK L+R TR PE+GDKFSSRHGQKGV G IVQQED PF++RGICPD+IMNPHGFP
Sbjct: 830  EDAFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVQQEDMPFNDRGICPDMIMNPHGFP 889

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMTVGK IELL GKAG+  G+FHYG+AFG        V  + + L KHG++Y+GKD+ Y
Sbjct: 890  SRMTVGKTIELLAGKAGLMEGKFHYGTAFG-----GSKVRDVCQELEKHGYNYHGKDIFY 944

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            SGITG PL+AYI+ GP+YYQKLKHMV DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEM
Sbjct: 945  SGITGEPLEAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1004

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERDCLI YGASML+ ERLM++SD F   +C  CG L           C  C++   +S++
Sbjct: 1005 ERDCLIGYGASMLLMERLMLASDAFSADICSSCGRLA------SRAWCHACRSS-AVSAV 1057

Query: 1133 KLPYACKLLIQELQSMNIVPRLKL 1156
             +PYACKLL QEL SMNIVPRLKL
Sbjct: 1058 DMPYACKLLFQELASMNIVPRLKL 1081


>gi|346323848|gb|EGX93446.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Cordyceps
            militaris CM01]
          Length = 1164

 Score = 1179 bits (3049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1173 (51%), Positives = 797/1173 (67%), Gaps = 54/1173 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKV--RGLVKQHLDSFNYFVNTGIRKIVRANDRI 70
            E   + +KL  P+ +  DKFQLLP FLKV  R     H+DS+N+FV   I+ IVRAN  I
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKVRLTADMHIDSYNFFVEQEIKDIVRANRTI 72

Query: 71   VSGIDPSIFL-----RFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIE 122
             S +D + +L     RF D+R+ +P          S  + P  CRL DMTYAAPILV+I 
Sbjct: 73   RSDVDSNFWLECRLRRFTDIRVDRPQRQDYKEAKSSTDVTPMECRLRDMTYAAPILVDIV 132

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y++    +K  + + +V +GR+P+MLRS +C L G + +E+ ++ ECPLDPGGYFII GT
Sbjct: 133  YIR----DKQKIIRRNVSLGRMPVMLRSSKCRLSGANNSEMEKMNECPLDPGGYFIINGT 188

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
            EKV+LIQEQLSKNRVI+++D+K  I +ASVTSST   KSKT + ++K ++ L+ N  V+ 
Sbjct: 189  EKVILIQEQLSKNRVIVESDEKNRIISASVTSSTHERKSKTNVTLKKDRIVLVHNVLVEG 248

Query: 242  IPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IPI++V+KA+G  +D E++Q+V G D RY    L + +E     ++TQ +ALEY+  +VK
Sbjct: 249  IPIVIVLKALGGLTDYEIMQLVAGADGRYQDEFLINFDEATKAGVFTQHQALEYIGSRVK 308

Query: 301  ----RSTFGSPPNDREG---RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
                R  FG  P  R          L ++ +A+VP+   +F PK  YVA+M R+++ A  
Sbjct: 309  MGSRRGQFG--PQVRRNNVEEGLDALANLIIAHVPIEGLDFYPKAIYVAMMTRKVLMAAQ 366

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
            +   +DD+D+VGNKRLEL+GQL+SLLFEDLFK    EV+ ++D  L K +R+   D    
Sbjct: 367  DSKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFTVEVKMSIDKFLKKNNRAVPLDAVNM 426

Query: 414  IVR--DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
            I    ++I +G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+R
Sbjct: 427  ISNHANNIGMGINRAIQTGNWSVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTR 486

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVE 529
            KVSGPRALQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE
Sbjct: 487  KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEDPVKRWVFTLDVGVE 546

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
             +   SG E+H   S+++  NG      R PK F    R +RR G I  FVS+ +N    
Sbjct: 547  PIRNFSGAEMHREGSYIIHINGTPFALTRYPKRFCSKFRTMRRRGWISPFVSISINLHFN 606

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNA 649
             V+IA+D GR+CRP +I   G+ ++K  H++ L  G  +FDDFLR G++EYLDVNEE +A
Sbjct: 607  AVHIAADEGRICRPYIIVKNGVQKLKPEHLRLLQLGSVTFDDFLRNGVVEYLDVNEEQDA 666

Query: 650  LIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
            L+ +YE   T  TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ
Sbjct: 667  LVTIYEDKITMSTTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQ 726

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              R+D+LLY LVYPQRP++ ++TI+LV YDKL AGQNATV VMSYSGYDIEDA+V+NK+S
Sbjct: 727  FNRIDTLLYTLVYPQRPMVISKTIQLVNYDKLPAGQNATVVVMSYSGYDIEDALVLNKAS 786

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            +DRGFGRC V +KYT   QKY N   +RI  P   G G +R +   H       LDDDGL
Sbjct: 787  IDRGFGRCQVFRKYTTELQKYPNGRRERIGDPVNEGDGDQRRRSEKHK-----ALDDDGL 841

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTG----QTDSRYRSARQTYKGPDGETCVVDR 885
            A  G  +      I KE+PL+     M+ TG    +  S +R +   Y+ PD     +D+
Sbjct: 842  AMVGCRVFSGQSMIKKETPLD-----MTTTGIGLDRGSSDFRDSAVNYRIPD--PAYIDK 894

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V +   +     +K   R TRRPELGDKFSSRHGQKGV G IV  ED PF++ G+ PD+I
Sbjct: 895  VMISHTEKDTTVVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDHEDMPFADNGLTPDII 954

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            MNPHGFPSRMTVGK++E L GKA +  GR  YG  FG+ +  +  VE +S+ L+ HGFS+
Sbjct: 955  MNPHGFPSRMTVGKLLECLTGKASIIHGRPDYG--FGD-AFRSHPVEEMSQVLLDHGFSW 1011

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             GKD   SG+TG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+G
Sbjct: 1012 EGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDG 1071

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR+GEMERDCLIAYGAS L+ ERLM+SSD   + +C+ CGL GY       G C TCK+
Sbjct: 1072 GLRLGEMERDCLIAYGASQLLLERLMISSDGVVIDICQQCGLFGY------KGYCQTCKS 1125

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
               ++ M +PYA KLL+QEL SMN+  RL+LA+
Sbjct: 1126 TREVTKMTMPYAAKLLVQELISMNVGVRLQLAD 1158


>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
 gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
          Length = 1155

 Score = 1179 bits (3049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/1167 (51%), Positives = 799/1167 (68%), Gaps = 51/1167 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DK+QLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTKEDKYQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRIIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
              +   +L F D+R+G P+    +     +++ P  CRL DMTYAAP++V+I Y +    
Sbjct: 73   DQEKDFWLEFTDIRVGTPTRNDYSDFKARDEVTPMECRLRDMTYAAPVVVDIVYSR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            ++  + + D+ + RIP+ML+S +C L G   A++  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DRKKIVRKDIPLCRIPVMLKSAKCCLSGATNAQMEIMNECPLDPGGYFIINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K G ++ASVTSST   KSKT + ++K ++ L  N  V+ IPI++V+
Sbjct: 189  EQLSKNRVIVEADEKTGGVSASVTSSTHERKSKTYVILKKDRIVLNHNVLVEPIPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
            KA+G  SD E++++V G D RY    L + +E     ++TQ++ALEY+  +VK    G P
Sbjct: 249  KALGGLSDYEIMELVAGGDARYQDDFLINFDEATKAGVFTQQQALEYVGSRVK---MGGP 305

Query: 308  PNDREGRA---------FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               R   A            L +V +A+V + + +F PK  Y+A+M+RR++ A  +   +
Sbjct: 306  KKGRSMAAPRRSPVEEGLDALANVVVAHVEIQDLDFYPKAIYIAMMVRRVLMASHDPKLV 365

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+VGNKRLEL+GQL+SLLFED+FK  +  ++  ++    KP+R+S +D    I    
Sbjct: 366  DDRDFVGNKRLELAGQLLSLLFEDMFKMFVGSLKGNMEYFFKKPNRTSAYDPVGPISSQG 425

Query: 419  --ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GL R + +GN++VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGP
Sbjct: 426  QYITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGP 485

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELL 534
            RALQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P+ +  + L  GVE + + 
Sbjct: 486  RALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKNWIFSLIPGVEPIRMF 545

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            +G E+H P S+++  NG      R PK FA   + +RR G I  FV + +NE    ++IA
Sbjct: 546  TGTEMHRPGSYIIHLNGTPFALTRHPKQFAARFKTMRRRGHISPFVGIHINEHFSAIHIA 605

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            +D GR+CRP +I   G  R+K+ H++ L  G  +FDDFL+  +IEYLDVNEEN+ALIA+ 
Sbjct: 606  TDEGRICRPYIIVKDGKPRLKKEHLRLLQLGKATFDDFLKNSVIEYLDVNEENDALIAIR 665

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            E D    TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D
Sbjct: 666  EEDVNQSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRID 725

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            +LLY LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGF
Sbjct: 726  TLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGF 785

Query: 775  GRCIVVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            GRC V +KYTA  Q+Y N   DR+  ++ D  G       +  H+      LD DGLA  
Sbjct: 786  GRCQVFRKYTAELQQYPNGRKDRLGGIQKDEEG-----RTIAKHA-----CLDKDGLAVV 835

Query: 833  GEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            G  +   +  I KE+P+ +T   I S  G  +  +R A   Y+ PD     +D+V + + 
Sbjct: 836  GYRVHSGETMIMKETPIDQTSTGIGSDRGSDE--FRPAPINYRIPD--PAYIDKVMVSNT 891

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            +     IK   R TRRPELGDKFSSRHGQKGV G IV QED PFS+ G+ PD+IMNPHGF
Sbjct: 892  EKNTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSDSGLVPDIIMNPHGF 951

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTVGK+ E L GKA V  GR  YG  FG+ +  +  VE +   L++HGFS+ GKD  
Sbjct: 952  PSRMTVGKLFECLTGKASVVAGRRDYG--FGD-AFRSHPVEEMGRVLIEHGFSWEGKDYF 1008

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             SGITG P +AY+F GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GE
Sbjct: 1009 TSGITGEPHEAYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGE 1068

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLIAYGAS L+ ERLM+SSD  +V +C  CGLLGY       G C TC +   ++ 
Sbjct: 1069 MERDCLIAYGASQLLLERLMISSDGTQVDICERCGLLGY------KGFCQTCGSTSQVTQ 1122

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAE 1158
            M +PYA KLL+QEL SMN+  R++L +
Sbjct: 1123 MTMPYAAKLLVQELISMNVGVRMQLED 1149


>gi|326429748|gb|EGD75318.1| RNA polymerase II [Salpingoeca sp. ATCC 50818]
          Length = 1139

 Score = 1177 bits (3045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/1152 (51%), Positives = 789/1152 (68%), Gaps = 54/1152 (4%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D   +A P+ ++ DK++LLP FL+++GLV+QH+DSFN+FV   I  IV+AN +IVS ++P
Sbjct: 24   DADNVAHPINNIEDKWRLLPSFLQLKGLVRQHVDSFNHFVEIDIHNIVKANSKIVSDVNP 83

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
             ++L +  +R+G+P +      +  + P  CRL + TYAAP+ VN+              
Sbjct: 84   RVYLEYTSIRVGEPVIQNGPFDDHDVTPMECRLRNTTYAAPMHVNVRLSLSGEVRNY--- 140

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
             ND++IGR+PIMLRS +C L+  ++ ++A++GECPLDPGGYFII GTEKV+L+QEQLSKN
Sbjct: 141  -NDILIGRLPIMLRSKKCRLFKANDEQMAKMGECPLDPGGYFIIGGTEKVILMQEQLSKN 199

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R+I++ D+ G ++ASVTSS+   K+KT+I M++G   L +N   + +P++VV+KAMGM S
Sbjct: 200  RIIVERDRHGEMSASVTSSSAERKTKTIINMKRGNFMLKVNMLAEDVPLVVVLKAMGMTS 259

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDREG 313
            DQE++Q +G D +   L  PS+++CA L+++TQ++AL YL  KV+  R  +G     +E 
Sbjct: 260  DQEILQFIGADEQSMELFGPSLQQCAELEVFTQDQALRYLGTKVRIPRREYGPSRRTKED 319

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A SIL  V L+++ V N + RPKC Y+ VM RRM+ A+ NK   DD+DY GNKRLEL+G
Sbjct: 320  EARSILASVVLSHIEVRNFDMRPKCIYLCVMARRMIAAIRNKSGGDDRDYYGNKRLELAG 379

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
             L++LLFED FKT+   +++ +D    + +  + FD +Q I  + IT  +   +S+GN++
Sbjct: 380  SLMALLFEDSFKTLNGRIKRELDHTFVRVTARA-FDPAQIIRANPITQAINYAISSGNWN 438

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRF+M R G+T VL+RLSFI  LG MTR++ QFEK+RKVSGPR+LQPSQWGMLCP DTP
Sbjct: 439  LKRFRMERAGVTSVLSRLSFIAALGMMTRITSQFEKTRKVSGPRSLQPSQWGMLCPSDTP 498

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGE CGLVKNLALM++VT D +E PLI L Y LGVE L L++GEE  + ++++V  NG +
Sbjct: 499  EGETCGLVKNLALMSYVTVDVDEAPLIRLAYNLGVEGLNLVNGEEFSHEDTYVVFVNGTM 558

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            LG  R P      +R LRRAG+I EFVS +++   R V+IASD GRVCRP +I + G   
Sbjct: 559  LGVTRSPHHLVRAVRLLRRAGRINEFVSAYISASTRTVHIASDAGRVCRPYIIVEHGQPL 618

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +    +++L  G+  FDDF+R G++EYLDVNE N++LIALYE D   +TTH+EIEPFT+L
Sbjct: 619  VTPQQLRDLALGILHFDDFIRLGVVEYLDVNELNDSLIALYEKDMCEETTHLEIEPFTVL 678

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G  AGLIPYPHHNQSPRNTYQCAMGKQAMG IA+N   R+D+LLY L+YPQRPL+ T+TI
Sbjct: 679  GACAGLIPYPHHNQSPRNTYQCAMGKQAMGVIAYNYQRRIDTLLYALMYPQRPLVKTKTI 738

Query: 734  ELVGYDKLGAGQNATVAVMSYSG---YDIEDAIVMNKS------SLDRGFGRCIVVKKYT 784
            EL+ ++KL AGQ +  A +  SG   Y     I   +S      +   G   C    +  
Sbjct: 739  ELIDFEKLPAGQVSCEARVCASGPRWYRRSRRIPQGQSKPPSHTTTTSGVRFCTYATRVP 798

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
             +  ++A       +R   T   A     +HH +L            P   +   DV +N
Sbjct: 799  GVCVRFAT------MRHRFTVAAA-----IHHVHL-----------HPVSALSHQDVLVN 836

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            KE P    G++M    +  + Y  A   +KG +G     D+VA+ S     + IK  +R 
Sbjct: 837  KEVPA---GTVME-GNKRRTVYTPAPVKFKGAEGCDAYCDQVAVTSSSENYMIIKIRVRS 892

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TR PELGDKFSSRHGQKGVCG IV QED PF+++G+CPD+IMNPHGFPSRMTVGK++EL+
Sbjct: 893  TRIPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGVCPDMIMNPHGFPSRMTVGKLMELV 952

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
            GGKA V  G F+YG+AFG        +E + ETLV HG++Y+GK+ + SGITG PL+AYI
Sbjct: 953  GGKAAVLSGNFNYGTAFG-----GTPLEEMCETLVDHGYNYHGKEFLTSGITGEPLEAYI 1007

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GP+YYQKLKHMV+DKMHAR +GP  +LTRQPTEGR+R GGLR+GEMERDCLI +G SM
Sbjct: 1008 FFGPVYYQKLKHMVMDKMHARATGPITLLTRQPTEGRSRQGGLRLGEMERDCLIGHGTSM 1067

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLMVSSD FEV  C  CGLLGY      AG C  CK+  N+  ++LPYACKLL QE
Sbjct: 1068 LLLERLMVSSDAFEVTACSKCGLLGY------AGWCQYCKSSANVCKLELPYACKLLFQE 1121

Query: 1145 LQSMNIVPRLKL 1156
            LQSMNIVPRL L
Sbjct: 1122 LQSMNIVPRLTL 1133


>gi|326533702|dbj|BAK05382.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score = 1176 bits (3042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/813 (70%), Positives = 669/813 (82%), Gaps = 22/813 (2%)

Query: 6   VEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR 65
            EG  +   +P  + LAAPV + VDKF LLP FLKVRGLVK+H+DSFNYF+  GI+ IVR
Sbjct: 13  AEGDAEAPPVPTYRSLAAPVSNPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIKNIVR 72

Query: 66  ANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ 125
           AN+RI +  DP I+L +K++ IG+PS+ VD   E + PH CRL+D TY+AP++V++EY  
Sbjct: 73  ANNRIEARSDPGIYLEYKNIYIGEPSVQVDFRVETITPHFCRLTDRTYSAPVIVDVEYTV 132

Query: 126 G-SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
           G +HT+     K    IG +PIMLRS  CVL GKDEAELAR GECPLDPGGYFI+KG EK
Sbjct: 133 GKTHTQH---RKPSFTIGYMPIMLRSYACVLNGKDEAELARYGECPLDPGGYFIVKGAEK 189

Query: 185 VLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPI 244
           V+LIQEQLSKNR+IIDTD KG + ASVTSST  VKSKTVI MEK K+YL LNQF K IPI
Sbjct: 190 VILIQEQLSKNRIIIDTDNKGRVIASVTSSTHEVKSKTVICMEKEKIYLQLNQFTKAIPI 249

Query: 245 MVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
           +VVMKAMG+E+DQEVVQMVGRDPRY+ LL  SI+ECA   IYTQ++AL+Y++ KV   T+
Sbjct: 250 IVVMKAMGIETDQEVVQMVGRDPRYADLLYLSIQECATERIYTQQQALQYMDDKV---TY 306

Query: 305 GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
               N ++GR+  ILRDVF+A+VPV+N NF+PKC Y AVMLRRM++A+LN D  DDKDYV
Sbjct: 307 AGAGNIKDGRSKLILRDVFIAHVPVNNGNFQPKCIYTAVMLRRMLDAILNSDTFDDKDYV 366

Query: 365 GNKRLELSGQLVSLLFEDLFKTM----ISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSI 419
           GNKRLELSGQLVSLLFEDLFKTM    +  + K  D+     +RSS  D SQ I++ D I
Sbjct: 367 GNKRLELSGQLVSLLFEDLFKTMNTYAVDRMNKNSDM-----ARSSPLDFSQLIMQQDVI 421

Query: 420 TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
           T GLER +STGN+D+KRFKMHRKG++QVL+RLS++ +LG+MTR++PQFEK+RK SGPRAL
Sbjct: 422 TSGLERAISTGNWDIKRFKMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRAL 481

Query: 480 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
           QPSQWGMLCPCDTPEGEACGL KNLALMTHVTTD+EEGPL +LC+ LGVEDL LLSGEE+
Sbjct: 482 QPSQWGMLCPCDTPEGEACGLTKNLALMTHVTTDQEEGPLRNLCFSLGVEDLSLLSGEEI 541

Query: 540 HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
           H P SFLV+FNGLILGKHR+P+ FA+ MR  RR+GKIGEFVSVFVNEKQ C++IASDGGR
Sbjct: 542 HAPGSFLVMFNGLILGKHRQPQKFANNMRTFRRSGKIGEFVSVFVNEKQHCIHIASDGGR 601

Query: 600 VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE---- 655
           VCRPL+IADKG +R+KEHHMKEL DG+RSFDDFLR+GLIEYLDVNEENNALIALYE    
Sbjct: 602 VCRPLIIADKGRARVKEHHMKELRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHVDQ 661

Query: 656 -GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            G      THIEIEP T+LGV+AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL R D
Sbjct: 662 DGVQRSSITHIEIEPMTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRAD 721

Query: 715 SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
           SLLYLLVY QRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF
Sbjct: 722 SLLYLLVYAQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 781

Query: 775 GRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
           GRCI +KKYT  ++KY +  SDRI +P R   G
Sbjct: 782 GRCIAMKKYTVTSEKYGDGISDRIAKPQRNKDG 814


>gi|449300576|gb|EMC96588.1| hypothetical protein BAUCODRAFT_33950 [Baudoinia compniacensis UAMH
            10762]
          Length = 1214

 Score = 1176 bits (3041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/1151 (51%), Positives = 778/1151 (67%), Gaps = 46/1151 (3%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FL+V+GLVKQH+DS+NYF +  +++IVRAN  I S      
Sbjct: 94   KSLTDPINTARDKWNLLPAFLRVKGLVKQHIDSYNYFTDVALQEIVRANRYIRSDAQKDR 153

Query: 79   FLRFKDVRIGQPSMTVD----GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            F++F  +R+G P+   D         + P+ CRL DMTYAAPI V  +YV  S T     
Sbjct: 154  FIQFTGIRVGNPNRQDDRDRTNHESPVTPNECRLRDMTYAAPIFV--DYVWSSST--GLR 209

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
             K + +IGR+P+MLRS +CVL G+ EA++  L EC +DPGGYFI++G EKV+L+QEQLSK
Sbjct: 210  RKTNKMIGRMPMMLRSSKCVLSGRSEADMGMLNECSIDPGGYFIVRGQEKVILVQEQLSK 269

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG I ASVTS T  VK+KT + ++KG + L  N   + IP+ +V++AMG++
Sbjct: 270  NRVIVES-AKGIIQASVTSHTANVKTKTYVLLKKGLLVLKHNSLTEDIPVAIVLRAMGVQ 328

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF----GSPPN 309
            SD E++ +  G D  Y     P++E+ A   ++TQE+AL+Y+  + K   F    G    
Sbjct: 329  SDHEILLLAAGNDATYQDEFAPNLEQAALEGVFTQEQALDYIASRFKPDRFPTFAGKASK 388

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
              + +A   L    + +V V   NFRPK  Y+A M RR++ AM +   +DD+DYVGNKRL
Sbjct: 389  SPKQQALDKLAGTIIPHVEVEGLNFRPKALYIAFMTRRVLMAMHDPKLVDDRDYVGNKRL 448

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTL 427
            EL+GQ+++LLFEDLFK +  +++ ++D IL K + +  FD  + I      IT GLER +
Sbjct: 449  ELAGQMLALLFEDLFKEVTKQIKLSMDKILKKHNPTQEFDPERLIDLSESRITTGLERAI 508

Query: 428  STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            STGN+ +KRF+M R G+T VL+RLS+I  LG MTR++ QFEK+RKVSGPRALQPSQ+GML
Sbjct: 509  STGNWALKRFRMDRAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGML 568

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            C  DTPEGEACGLVKNLALMTH+TT ++E P+  + + LG ED+   SG E+++  ++++
Sbjct: 569  CTSDTPEGEACGLVKNLALMTHITTSDDEAPIRRMAFSLGAEDVTSASGTEVYSAGAYII 628

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG  +   R+PK F    RK RR G+I EFVS+++N     V+IA+D GR+CRPL++ 
Sbjct: 629  FVNGTPVALTRQPKQFLVAFRKFRRMGRISEFVSIYINHHHNGVHIATDEGRICRPLIVV 688

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            + G S++    +  L  G   FDD L  G++EYLDVNEEN++ IA+YE   T  TTH+EI
Sbjct: 689  ENGKSKVNARFLDSLRKGTMGFDDALSRGIVEYLDVNEENDSNIAVYEDGITQHTTHLEI 748

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+VYPQ+P+
Sbjct: 749  EPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPM 808

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            ++TR IELV YDKL AGQNA VAVMSYSGYDIEDA+V+NK+S DRGFGRC V KK     
Sbjct: 809  VSTRAIELVKYDKLPAGQNAIVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKINVQL 868

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            + Y N  +DR+   D   P   +             L  DG+   G  +   D Y+ KE 
Sbjct: 869  KTYGNGATDRVTGRDDANPKHVK-------------LGKDGIIEAGMQLAAGDTYMLKEK 915

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            PL+   S+ +    +   +     +YK PD   C  D+V + + ++     K   R TRR
Sbjct: 916  PLQQSVSVAA----SAQIWAPEHMSYKLPD--PCYADKVMVGTTESNHTIFKIQTRQTRR 969

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PE+GDKFSSRHGQKGV G I +Q D PFS+ GI PD+IMNPHGFPSRMTVGKM+EL+ GK
Sbjct: 970  PEVGDKFSSRHGQKGVVGIIAEQADMPFSDSGITPDIIMNPHGFPSRMTVGKMLELVAGK 1029

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
            AGV  G   YG+AFG        VE +   L++ GFSY+GKD + SGITG  L AY+F G
Sbjct: 1030 AGVLKGTQEYGTAFG-----GSKVEEMGNELIRQGFSYSGKDCVTSGITGESLPAYVFFG 1084

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            PIYYQKLKHMV DKMHAR +GPR +LTRQPTEGR+R GGLR+GEMERDCLIAYGAS L+ 
Sbjct: 1085 PIYYQKLKHMVQDKMHARSTGPRAILTRQPTEGRSRAGGLRLGEMERDCLIAYGASQLLL 1144

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERLM+SSD  EV VC  CG++GY N       C++C +   +  M +PYA KLLIQEL S
Sbjct: 1145 ERLMLSSDAHEVDVCETCGMMGYNN------WCTSCSSSVGVVKMTMPYAAKLLIQELLS 1198

Query: 1148 MNIVPRLKLAE 1158
            MN+   L+L +
Sbjct: 1199 MNVKASLQLED 1209


>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1186

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1157 (51%), Positives = 786/1157 (67%), Gaps = 54/1157 (4%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLK++GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 59   KSLTDPINTAQDKWNLLPAFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 118

Query: 79   FLRFKDVRIGQPSMTVDGVSEKLN------PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
            ++RF D+ +G P    +    K +      P+ CRL DMTYAAPILV+ EYV+G    + 
Sbjct: 119  YIRFHDIYLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEYVRG----RQ 174

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
             +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI+ GTEKV+L+QEQL
Sbjct: 175  RVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKVILVQEQL 234

Query: 193  SKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            SKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N   + +PI++++KAM
Sbjct: 235  SKNRVIVETDLKKDIVQASVTSSSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAM 294

Query: 252  GMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGS 306
            G++SD+E++ +V G D  +      + EE   L IYTQ +ALEY+  ++K     ++FG 
Sbjct: 295  GIQSDKEMLLLVAGIDSTFQEDFAINFEESVKLGIYTQHQALEYIGSRIKINRKPNSFGI 354

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
               +    A   +  V +++V V N NFRPK  YVA M RR++ A  +   +DD+DYVGN
Sbjct: 355  TRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGN 414

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLE 424
            KRLEL+GQL++LLFEDLFK    +++  +D +L KP R+ +FD    +    + IT G+ 
Sbjct: 415  KRLELAGQLLALLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMN 474

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+
Sbjct: 475  RAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQF 534

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED++ + G ELH   +
Sbjct: 535  GMLCPSDTPEGEACGLVKNLALMTHITTNDEEQPVRKLIFALGAEDVQTVGGRELHGQGA 594

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            +++  NG  +   RRPK F +  R+LRR G++ EF+SVF+N  Q  V++A+D GR+CRPL
Sbjct: 595  YIIFLNGSPIALTRRPKFFLNSFRRLRRTGRVSEFISVFINHHQNAVHVATDDGRICRPL 654

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I + G S  ++       DG  S   +L      ++ V  +  + IA+YE D       
Sbjct: 655  IIVEDGKSNERD-------DG-NSTTSWLMVSWSIWI-VMRKTTSYIAVYEEDRLRARRI 705

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             +        +  GLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DSLLY +VYPQ
Sbjct: 706  WKSNRLPFSALWPGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQ 765

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ TRTIEL+ YDKL AGQ+ATVAVMSYSGYDIEDA+V+NK S+DRGFGRC V +KY+
Sbjct: 766  KPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYS 825

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + Y+N T D++  PDR      R            +LD+DGLAA GE +   +VYIN
Sbjct: 826  TNLKSYSNGTKDKLKGPDRENGVPIRKHA---------LLDNDGLAAVGEKVNHGEVYIN 876

Query: 845  KESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
            K +P     S +  TG    R   Y  + QTYK PD     +D+V + + +  +  IK  
Sbjct: 877  KVTPENALSSGI--TGSDAGRPIAYIPSPQTYKLPD--PSYIDKVMISATEAENQLIKVQ 932

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TR PE+GDKFSSRHGQKGV G I +  D PFS+ GI PD+IMNPHGFPSRMTVGKM+
Sbjct: 933  TRQTRVPEVGDKFSSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKML 992

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            EL+ GKAG+  G+F YG+AFG        VE +S  LV HGFSY GKD + SGITG PL 
Sbjct: 993  ELIAGKAGILSGQFGYGTAFG-----GSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLP 1047

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            AY+FMGPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG
Sbjct: 1048 AYVFMGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYG 1107

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             S L+ ERLM+SSD  EV VC  CG +GY       G C  CK    +  M +PYA KLL
Sbjct: 1108 TSQLLLERLMISSDRHEVDVCENCGFMGYL------GWCQRCKTSRGVVKMAIPYAAKLL 1161

Query: 1142 IQELQSMNIVPRLKLAE 1158
            +QEL SMN+V RLKLA+
Sbjct: 1162 VQELFSMNVVARLKLAD 1178


>gi|443897388|dbj|GAC74729.1| RNA polymerase III, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1158

 Score = 1173 bits (3035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/1163 (51%), Positives = 796/1163 (68%), Gaps = 68/1163 (5%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+K+V DK+QL+P FL+V+GLVKQH+DS+NYFV+  ++ I++AN++I S IDP  +L
Sbjct: 39   LMDPIKTVEDKWQLVPAFLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYL 98

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            ++ D+ +G+P     D +   + PH CRL D+TY+A I VNIEY +GS      + + +V
Sbjct: 99   KYTDITVGEPRRYDGDALQRPITPHECRLRDITYSAHIFVNIEYTRGS----KIIRRKNV 154

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGRIP+MLRS +CVL  K E ELA++ ECPLDPGGYF++KGTEKV+L+QEQLSKNR+I+
Sbjct: 155  AIGRIPVMLRSNKCVLANKSEKELAKMSECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV 214

Query: 200  DTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
            + D KKG ++ASVTSST   KSK+ +  + G+++L  N   + IPI +  KAMG+++D+E
Sbjct: 215  EADSKKGTVSASVTSSTHERKSKSYVLTKHGRIFLKHNSLHEDIPIAIAFKAMGIQADRE 274

Query: 259  VVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE---GR 314
            ++Q+V G D  Y  L   ++EE A L +YT+++AL+++  + K S    P + R      
Sbjct: 275  ILQLVAGHDDVYKELFAINLEEAARLGVYTRKQALDFIGARAKASR--KPLSMRRPLAEE 332

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  +L  V +A+VPV   NFRPK  Y+A M+RR++ AM ++  +DD+DYVGNKRLEL+GQ
Sbjct: 333  ALDVLATVIMAHVPVERLNFRPKAIYIACMVRRVLMAMQDEKKVDDRDYVGNKRLELAGQ 392

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLSTGNF 432
            L++LLFEDLFK   S+++  +D IL KP+R+  FD  +QF    D IT G  R +STGN+
Sbjct: 393  LLALLFEDLFKKFNSDLKLNIDKILKKPNRTVEFDAFNQFHFNGDYITSGFVRAISTGNW 452

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQWGMLCP DT
Sbjct: 453  SLKRFKMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 512

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLAL TH+TTD EE P+  + + LGVED+ LL+G EL+ P+SF+V  NG 
Sbjct: 513  PEGEACGLVKNLALTTHITTDVEEEPIARVAFTLGVEDIHLLTGAELYRPDSFVVYLNGN 572

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--G 610
            +LG  R P+ F    R+LRRAG+I EFVSV+ N   + VYIASDGGR+CRPL++ D   G
Sbjct: 573  VLGVTRFPQRFVMQFRRLRRAGRISEFVSVYTNNHHQTVYIASDGGRICRPLIVVDAVTG 632

Query: 611  ISRIKEHHMKELLDGVRSFDDFL----REGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
              R+ E H+++L  G       +    R+  I +      +++L            +  +
Sbjct: 633  QPRVTEDHIRQLKSGAPRHQTIIHNSSRDRTIHHPRRRRWSHSL------------SSTQ 680

Query: 667  IEPFTILGVIAGLIPYPHHNQSPR-NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
             +P T L     L   P    SPR    QCAM KQA G+I +NQL R+D+LLYL+VYPQ 
Sbjct: 681  PKPKTCLSC---LYHSPPLLCSPRLFRQQCAMAKQAQGSIGYNQLERIDTLLYLMVYPQE 737

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTIELVGYDKL AGQNA VAVMS+SGYDIEDA+++NK+SLDRGFGRC  +KK + 
Sbjct: 738  PMVKTRTIELVGYDKLPAGQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSST 797

Query: 786  INQKYANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            + +KY N T DR+      + TG   +R            IL+ DG+A  GE +   DVY
Sbjct: 798  VIRKYPNGTHDRLADAPVDEATGKRQKRYD----------ILEADGIAGVGERVDQGDVY 847

Query: 843  INKESPLETRGS------IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +NK++P+    +      I +        Y+SA  +YK P   +  +D+V +    +   
Sbjct: 848  VNKQTPVNANDNSSTAIMIGASNAAASVAYKSAPLSYKPP--VSGYIDQVLITDTDSDQT 905

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK L+R TRRPELGDKFSSRHGQKGVCG IVQQED PFS+RGI PD+IMNPHGFPSRMT
Sbjct: 906  LIKALVRQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFSDRGINPDIIMNPHGFPSRMT 965

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGKMIELL GKAGV  G   YG+AFG        VE +S  LV++G++Y  K+ + SGIT
Sbjct: 966  VGKMIELLSGKAGVVTGTLQYGTAFG-----GSQVEDMSRLLVENGYNYAAKETLTSGIT 1020

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G PL+AY++ GPIYYQ+LKHMV DKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1021 GQPLEAYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1080

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LI YGA+ L+ ERLM+SSD F V  C+ CGL+GY       G C  C +  ++  + +PY
Sbjct: 1081 LIGYGATQLLLERLMISSDAFTVHACQRCGLMGY------NGFCPYCSSSKHVVQLTIPY 1134

Query: 1137 ACKLLIQELQSMNIVPRLKLAEA 1159
              KL++QEL +M +VPRL L +A
Sbjct: 1135 GTKLMLQELMAMQVVPRLVLEDA 1157


>gi|148689460|gb|EDL21407.1| polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
          Length = 1102

 Score = 1172 bits (3032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1141 (52%), Positives = 767/1141 (67%), Gaps = 108/1141 (9%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++L AP+ +V           +V+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 66   EQLTAPIPTV-----------EVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 114

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 115  YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 170

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 171  ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 230

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 231  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 290

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317
            E+VQM+G +    A   PS+EEC    I+TQ +  E+                       
Sbjct: 291  EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQVKEF----------------------- 327

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
                           NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL+S
Sbjct: 328  ---------------NFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLS 371

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437
            LLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +KRF
Sbjct: 372  LLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRF 430

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
            KM R+G+TQVL+RLS+I  LG MTR+S QFEK+RK                        A
Sbjct: 431  KMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRK------------------------A 466

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG  
Sbjct: 467  CGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVI 526

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
            R  K      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    +   
Sbjct: 527  RDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNK 586

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV A
Sbjct: 587  HMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCA 646

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
            GLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ 
Sbjct: 647  GLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELID 706

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D+
Sbjct: 707  FEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK 766

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
            ++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +  
Sbjct: 767  VMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEG 819

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
                   +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSSR
Sbjct: 820  SNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSR 877

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTV  +    G      C     
Sbjct: 878  HGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVSYLWAFQG-----CCSE--- 929

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
                G+       V  + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHM
Sbjct: 930  ----GKKRA-VSLVTDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHM 984

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            VLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD F
Sbjct: 985  VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAF 1044

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            EV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKLA
Sbjct: 1045 EVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLA 1098

Query: 1158 E 1158
            +
Sbjct: 1099 K 1099


>gi|116199389|ref|XP_001225506.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
 gi|88179129|gb|EAQ86597.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
          Length = 1155

 Score = 1170 bits (3028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1167 (51%), Positives = 797/1167 (68%), Gaps = 51/1167 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + + L  P+ +  DK+QLLP FLKV+GLVKQH+DS+N+FV   I+ IV+AN  I S
Sbjct: 13   EPFYNGKSLTDPISTREDKYQLLPAFLKVKGLVKQHIDSYNFFVEQEIKDIVKANRSIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
              +   +L F D+R+G P+    T     +++ P  CRL DMTYAAP++V+I Y +    
Sbjct: 73   DQEKDFWLEFTDIRVGTPTRNDYTDFKARDEVTPMECRLRDMTYAAPVVVDITYSR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            ++  + + D+ + RIP+ML+S +C L G + A++  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DRKRIVRKDIPLCRIPVMLKSAKCCLSGANNAQMEIMNECPLDPGGYFIINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K G ++ASVTSST   KSKT + ++K ++ L  N  V+ IPI++V+
Sbjct: 189  EQLSKNRVIVEADEKTGGVSASVTSSTHERKSKTYVILKKDRIVLNHNVLVEPIPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
            KA+G  SD E++++V G D RY    L + EE A   ++TQ++ALEY+  +VK    G P
Sbjct: 249  KALGGLSDYEIMEVVAGGDARYQDDFLINFEEAAKAGVFTQQQALEYVGSRVK---MGGP 305

Query: 308  PNDREGRA---------FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               R   A            L ++ +A+V + + +F PK  Y+++M+RR++ A  N   +
Sbjct: 306  KKGRSMAAPRRSPVEEGLDALANIIIAHVTIKDLDFYPKSIYISMMVRRVLMAAHNPRLV 365

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+VGNKRLEL+GQL+SLLFED+FK  +  ++  ++    KP+R+S +D    I    
Sbjct: 366  DDRDFVGNKRLELAGQLLSLLFEDMFKMFVGGLKGNMEYFFKKPNRTSAYDPVGPISSQG 425

Query: 419  --ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GL R + +GN++VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGP
Sbjct: 426  QYITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGP 485

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELL 534
            RALQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P+ +  + L  GVE + + 
Sbjct: 486  RALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKNWIFGLIPGVEPIRMY 545

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            +G E+H   S+++  NG      + PK FA   +  RR G I  F+ + +NE    ++IA
Sbjct: 546  TGSEMHKRGSYMIHLNGTPFAITKHPKEFASRFKTTRRRGHISPFIGIHINEHFSAIHIA 605

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            +D GR+CRP +I   G  ++K+ H++ L  G  +FDDFL+  +IEYLDVNEEN+ALIA+ 
Sbjct: 606  TDEGRICRPYIIVKDGKPKLKKEHLRLLQLGKATFDDFLKRSVIEYLDVNEENDALIAIR 665

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            E D    TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D
Sbjct: 666  EDDVNHSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRID 725

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            +LLY LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGF
Sbjct: 726  TLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGF 785

Query: 775  GRCIVVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            GRC V +KYTA  Q+Y N   DR+  ++ D  G       +  H+      LD DGLA  
Sbjct: 786  GRCQVFRKYTAELQQYPNGRKDRLGGIQKDEAG-----NTIAKHA-----CLDKDGLAVV 835

Query: 833  GEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            G  +   +  I KE+P+ +T   I S  G  D  +R A   Y+  D     +D+V + + 
Sbjct: 836  GYRVHSGETMIMKETPIDQTSTGIGSDRGSDD--FRPAATNYRIAD--PAYIDKVMISNT 891

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            +     +K   R TRRPELGDKFSSRHGQKGV G I  QED PFS+ G+ PD+IMNPHGF
Sbjct: 892  EKNTSIVKVQTRQTRRPELGDKFSSRHGQKGVVGIIADQEDMPFSDSGLVPDIIMNPHGF 951

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTVGK+ E L GKA V  G   YG  FG+ +  +  VE + + LV+HGFS+ GKD  
Sbjct: 952  PSRMTVGKLFECLTGKASVVAGERDYG--FGD-AFRSHPVEEMGKVLVEHGFSWEGKDYF 1008

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
             SGITG P +AY+F GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GE
Sbjct: 1009 TSGITGEPHEAYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGE 1068

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDCLIAYGAS L+ ERLM+SSD  +V +C +CGLLGY       G C TC +   ++ 
Sbjct: 1069 MERDCLIAYGASQLLLERLMISSDGTQVDICELCGLLGY------KGFCQTCGSTSQVTQ 1122

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKLAE 1158
            M +PYA KLL+QEL SMN+  R++L +
Sbjct: 1123 MTMPYAAKLLVQELISMNVGVRMQLED 1149


>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
            var. thermophilum DSM 1495]
          Length = 1157

 Score = 1169 bits (3025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/1163 (51%), Positives = 795/1163 (68%), Gaps = 43/1163 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DK+QLLP FLKV+GLVKQH+DS+N+FV   I+ IVRAN  I S
Sbjct: 15   EPFYNGKKLTDPISTKEDKYQLLPAFLKVKGLVKQHIDSYNFFVEHEIKDIVRANRSIRS 74

Query: 73   GIDPSIFLRFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
              +   +L F D+R+  P+    +     +++ P  CRL DMTYAAP++V+I Y +    
Sbjct: 75   DQEKDFWLEFTDIRVLTPTRNDYSDFKARDEVTPMECRLRDMTYAAPVVVDIVYSR---- 130

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            ++  + + D+ + RIP+ML+S +CVL     A++  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 131  DRKRIVRKDIPLCRIPVMLKSSKCVLSKATNAQMEIMNECPLDPGGYFIINGTEKVILIQ 190

Query: 190  EQLSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K G + ASVTSST   KSKT + ++K ++ L  N  V+ IPI++V+
Sbjct: 191  EQLSKNRVIVEADEKTGGVQASVTSSTHERKSKTYVILKKDRIVLNHNVLVEPIPIVIVL 250

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR--STFG 305
            KA+G  SD +++++V G D  Y    L + +E     ++TQ++ALEY+  +VK   S  G
Sbjct: 251  KALGGLSDYQILELVAGGDALYQDDFLVNFDEATRAGVFTQQQALEYIGLRVKMGGSKKG 310

Query: 306  SPPND------REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              PN        EG     L ++ +A++ + + +F PK  Y+A+M+RR++ A  N   +D
Sbjct: 311  RSPNAPRRSPVEEG--LDALTNLIIAHITIEDLDFYPKAIYIAMMVRRVLMAAHNPKLID 368

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS- 418
            D+D+VGNKR EL+GQL+SLLFED FK  I+ ++  ++    KP+R+S +D    I     
Sbjct: 369  DRDFVGNKRFELAGQLLSLLFEDQFKMFIASLKGNMEYFFKKPNRTSAYDPVGPISSQGQ 428

Query: 419  -ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
             IT GL R + +GN+ V+RF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPR
Sbjct: 429  YITQGLNRAIQSGNWTVRRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPR 488

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLS 535
            AL PSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE + + +
Sbjct: 489  ALHPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNADEEPVKDCIFDLVPGVEPIRVFT 548

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
            G E+H P S+++  NG      R PK FA   R LRR G I  FVS+  NE    ++IA+
Sbjct: 549  GSEMHRPGSYIIHLNGTPFALTRHPKQFAARFRTLRRRGHISPFVSIHTNEHFSAIHIAT 608

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            D GR+CRP +I   G SR+K  H++ L  G  SFDDFLR G++EYLDVNEEN+ALIA+ E
Sbjct: 609  DEGRICRPYIIVKDGKSRLKPEHLRLLQLGKASFDDFLRLGVVEYLDVNEENDALIAMNE 668

Query: 656  GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             + T  TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+
Sbjct: 669  DEITRATTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDT 728

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            LLY LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGFG
Sbjct: 729  LLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFG 788

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            RC V +KYTA  Q+YAN   DR+  P +   G     +  H+      LD DGLA  G  
Sbjct: 789  RCQVFRKYTAELQQYANGRKDRLGGPQKDEEG---RTIAKHA-----CLDRDGLAIVGYQ 840

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            I+  +  I KE+P++   + +     +D+ Y  A   Y+  D     +D+V + + +   
Sbjct: 841  IRSGETMIMKETPVDVTSTGIGGDRGSDA-YVPAPVNYRIND--PAYIDKVMVSNTEKNT 897

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              IK   R TRRPELGDKFSSRHGQKGV G IV QED PFS+ GI PD+IMNPHGFPSRM
Sbjct: 898  AIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFSDSGIVPDIIMNPHGFPSRM 957

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK+ E L GKA V  GR  YG  FG+ +  +  VE +   L++HGFS+ GKD   SGI
Sbjct: 958  TVGKLFECLTGKAAVVAGRPDYG--FGD-AFRSHPVEEMGRVLIEHGFSWEGKDYFTSGI 1014

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG P +AY+F GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERD
Sbjct: 1015 TGNPHEAYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERD 1074

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CLIAYGAS L+ ERLM+SSD  +V VC  CGL GY       G C TC++  N++ M +P
Sbjct: 1075 CLIAYGASQLLLERLMISSDATQVDVCEACGLFGY------KGFCQTCQSTANVTQMTMP 1128

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YA KLL+QEL SMN+  R++L +
Sbjct: 1129 YAAKLLVQELISMNVGVRMQLED 1151


>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1140

 Score = 1167 bits (3020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1155 (52%), Positives = 790/1155 (68%), Gaps = 70/1155 (6%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRFKD 84
            +  DK++LLP FL+ RGLVKQH+DSFNYFV T I+ IV A  N RI S +DP+ FL + D
Sbjct: 28   TWADKWELLPAFLEARGLVKQHIDSFNYFVTTEIKDIVLAESNRRITSDVDPNWFLEYHD 87

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
            VR+G PS        +  P MCR+ DMTYA+ ILV+I YV+G    +  + KN V +GR+
Sbjct: 88   VRVGAPSYRGVLQHVQTTPMMCRIRDMTYASDILVDISYVRG----REVVRKNGVCVGRL 143

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C L+     ++ R+ ECP DPGGYFIIKGTEKVLL+QEQLS NR+I++ D K
Sbjct: 144  PIMLRSKLCRLHDATTEQMERMQECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVEMDPK 203

Query: 205  GNINASVTSSTETVKSKTVI--QMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
              + A VTSST   KS+TV+  + E   +++  + F + IP +++++AMGMESDQE+VQM
Sbjct: 204  KLVQAVVTSSTADNKSRTVVCFKSELSGLFVKHSAFTELIPAVIMLRAMGMESDQEIVQM 263

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPPNDREGRAFS 317
            VG +  +   ++ S+++     +++Q++ALEYL  K+K       +F S  +  +G A  
Sbjct: 264  VGTEKCHVDGMILSLQDAHATGVFSQQQALEYLGNKLKIRMYADGSFSSAFDQDKGGATK 323

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             L             +F  KC ++ +M+RR ++A  +   +DD+DY GNKRLEL+GQL++
Sbjct: 324  PL-------------DFSGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELAGQLIA 370

Query: 378  LLFEDLFKTMISEVQKTVDIILSK---PSRSSRFDLSQFIVRDSITVGLERTL------S 428
            LLFEDLFK+M +E++K+VD+ L+K    + S+R   S        TVGL+         +
Sbjct: 371  LLFEDLFKSMNTEIKKSVDMRLTKFFQQTSSARAGRS--------TVGLDSGYPDVLLRA 422

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN  +KRF++ R G++QVL+R SFI  LG MTRV  QFEKSRK++GPRALQPSQWGMLC
Sbjct: 423  TGN--IKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQFEKSRKLAGPRALQPSQWGMLC 480

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P DTPEGE CGL+K L+L+ HVTT +EEGP+  LCY LGVED   L+GEELH+  +  V 
Sbjct: 481  PSDTPEGEQCGLIKALSLLAHVTTPDEEGPIRRLCYSLGVEDAAGLTGEELHSAGTITVF 540

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG +LG HRRP+ F   MR LRR GKIGEFVS++ +E QR + IA+DGGR+CRPL++  
Sbjct: 541  LNGALLGVHRRPQTFMSDMRTLRRRGKIGEFVSIYEHEAQRAIIIATDGGRLCRPLIVVK 600

Query: 609  KGISRIK-EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667
            KG   +K E H+++L  G   F DFLR G+IE++DVNEENN+ IA+   D T ++TH+EI
Sbjct: 601  KGKPMLKPEVHLRKLRSGELRFTDFLRLGIIEWVDVNEENNSYIAINPEDVTMESTHLEI 660

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EP T+LG +AGL+PYPHHNQSPRNTYQCAMGKQAMGNIA NQ  R D+ L LL YPQ+P+
Sbjct: 661  EPLTLLGAVAGLVPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPM 720

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
              +RTI+L+GYD L AG NA+VAVMSYSGYDIEDA++MNK+S+DRGFGRC V +KY    
Sbjct: 721  CKSRTIDLIGYDNLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPL 780

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLL------LILDDDGLAAPGEIIKPNDV 841
             + A  +S+ +  P   G G +           +       I+D+DGL   GE +    +
Sbjct: 781  ARSAIGSSEELRAPPVVGGGGKGGGRHQRQGGFVGRAKKYAIIDEDGLPFSGEQVVDGGI 840

Query: 842  YINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
             INK SP+       + TGQ  S +R    +YK P      VDRV    +++     K +
Sbjct: 841  LINKVSPMSD-----AATGQV-SHWRDTPISYKNP--VPSYVDRVIATENEDQAKIFKCI 892

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
             R TRRPELGDKFSSRHGQKGV G IV QED PF E+G CPDLIMNPHGFPSRMTVGK++
Sbjct: 893  TRQTRRPELGDKFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKLL 952

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            E + GKAGV  G   YG+AFG       T E ++++L++HGF  + K+ I SG+TG  L+
Sbjct: 953  ECVSGKAGVLDGERSYGTAFG-----GTTKEHMTQSLIRHGFHPSAKEYITSGVTGEALE 1007

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
             YIF+GPIYYQKLKHMV+DK+HAR +GP   LTRQPTEGRA++GGLR+GEMERDCL+AYG
Sbjct: 1008 CYIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPTEGRAKDGGLRLGEMERDCLVAYG 1067

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
            AS L+ ERLM+SSD F   VCR CGLL Y N     G C  C   +NI  +++PYACKLL
Sbjct: 1068 ASNLLLERLMLSSDVFTASVCRRCGLLSYQN-----GTCKLCGTSENIVDIRMPYACKLL 1122

Query: 1142 IQELQSMNIVPRLKL 1156
             QELQ+MN+ PRLK+
Sbjct: 1123 FQELQAMNVCPRLKV 1137


>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
 gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
          Length = 1089

 Score = 1164 bits (3011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1147 (51%), Positives = 782/1147 (68%), Gaps = 82/1147 (7%)

Query: 22   AAPVKSVVDKF----QLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS 77
            A PV+     F    +L  E  KV G   QH+DSFNYF+N  I+KIV+AN  + S  DP 
Sbjct: 10   APPVEKQKPDFGLSGKLTEETNKVNG---QHIDSFNYFINVDIKKIVQANQEVKSDADPC 66

Query: 78   IFLRFKDVRIGQPSMTVDGV--SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
             +L++ +V +G+P +  +G   ++   PH CRL DMTY+API V+IEY +G+      + 
Sbjct: 67   FYLKYLNVHVGKPDVE-EGFNNTKSTTPHECRLRDMTYSAPITVDIEYTRGTQR----VV 121

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +N ++IGR+PIMLRS  CVL GK + +L+++ ECP+DPGGYFII+GTEKV+LIQEQLS N
Sbjct: 122  RNGLLIGRMPIMLRSSNCVLTGKSDYQLSKVNECPMDPGGYFIIRGTEKVILIQEQLSWN 181

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            ++I + D  G I   VTSST   KS+T++  + G+ YL  N   ++IP+ +++KAMG+ S
Sbjct: 182  KMITE-DYNGVIQCQVTSSTHEKKSRTILLTKHGRYYLKHNSMTEEIPVAIILKAMGIAS 240

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE--- 312
            DQE++Q+VG DP       PS+ E AN  ++TQ++ALEY+  K+    F +     +   
Sbjct: 241  DQEIMQLVGIDPETQKRFAPSLLEAANHKVFTQQRALEYMGSKLIAKRFTTAATKYKTTA 300

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A  +L    LA+VPV + NF+ K  YVA+M+RR++ A L++ A+DD+DY GNKRLEL+
Sbjct: 301  DEARDLLATTILAHVPVPSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELA 360

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L+SL+FEDLFK    E++   D  + K  ++++FD+ + +    IT GLE  +STGN+
Sbjct: 361  GSLLSLMFEDLFKRFNWELKMIADKNIPK-IKAAQFDVGKHMREALITAGLETAISTGNW 419

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DT
Sbjct: 420  TIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDT 479

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEGEACGLVKNLALMTH+TT+ +E P+I L Y  GVED+ LL GE ++NP  F+V  NG 
Sbjct: 480  PEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVEDIRLLGGETINNPKVFMVFINGN 539

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            ILG     +   +V R +RR G IG FVS+  +  QRCVYI +DGGR+CRP +I   G  
Sbjct: 540  ILGVTIAYRRLVEVFRMMRRRGLIGAFVSIHTSFTQRCVYIHTDGGRLCRPYIIVQAG-- 597

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFT 671
                          R            YLDVNEEN++ IA  E D  P+ TTH+EIEPFT
Sbjct: 598  --------------RPL----------YLDVNEENDSFIAYQERDIDPEKTTHLEIEPFT 633

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y +VYPQ P++ +R
Sbjct: 634  LLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQSPMVRSR 693

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL  +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++Y+
Sbjct: 694  TIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYS 753

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP-LE 850
            N T DRI+ P + G   +   +  H       LD DG+ +PGE +      +NKE P ++
Sbjct: 754  NQTFDRIMGPMKDGVTGK--IIAKHE-----CLDTDGIVSPGERLTCKQTMVNKEMPAVK 806

Query: 851  TRGSI-MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            +   I    +GQ    Y +                RV + ++   +  +K L+R TRRPE
Sbjct: 807  SNNPIEQKESGQQPIAYSA----------------RVLVSTNNEEEFLVKILLRQTRRPE 850

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGV G IV+QED PF++ G+ PD++MNPHGFPSRMTVGK +ELLG KAG
Sbjct: 851  IGDKFSSRHGQKGVTGLIVEQEDLPFNDYGMSPDMVMNPHGFPSRMTVGKTLELLGSKAG 910

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
            V  G+FHYG+AFG           + + L  HGF+Y GKD+ YSGITG PL+ YI+ GP+
Sbjct: 911  VLEGKFHYGTAFG-----GSKCSDLQDELFNHGFNYLGKDVFYSGITGEPLEVYIYSGPV 965

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKLKHMV DKMHAR  GPR +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ER
Sbjct: 966  YYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMER 1025

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            LM+SSD F+V VC VCG L Y      +  C  C++  ++S++ +PYACKLL QEL SMN
Sbjct: 1026 LMISSDAFDVDVCNVCGRLAY------SSWCHNCRSSASVSTISMPYACKLLFQELTSMN 1079

Query: 1150 IVPRLKL 1156
            IVPRLKL
Sbjct: 1080 IVPRLKL 1086


>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
          Length = 1222

 Score = 1158 bits (2995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1202 (50%), Positives = 804/1202 (66%), Gaps = 77/1202 (6%)

Query: 15   LPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVS 72
            LP  ++L  P   + +K+QLLP FL+   L+ QH+ SF+YF+ T I+K+V A  N  + S
Sbjct: 4    LPMSRRLENPY--LENKWQLLPHFLR---LMNQHIASFDYFIETEIKKVVAAEPNHTVRS 58

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
             +DP+ +L + DV +G PS+  D   S    P  CRL D TY+API V++ Y +G     
Sbjct: 59   EVDPNFYLSYTDVYVGVPSIEEDAFTSTAATPFECRLRDCTYSAPIFVDVRYRRGPQIVT 118

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            T      V IGRIPIMLRS +CVL+ K  ++L  L ECP DPGGYF++KG EKV+L+QEQ
Sbjct: 119  T----KRVPIGRIPIMLRSSQCVLHNKSWSQLEALKECPHDPGGYFVVKGVEKVILMQEQ 174

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKG----KMYLLLNQFVKKIPIMVV 247
            LSKNR+II+ D KG + A++TSST   KS+  I ++      ++YL  N     IP++V+
Sbjct: 175  LSKNRMIIELDAKGFVCATITSSTHERKSRCSIVVKPTTHGHRVYLKHNTLGDDIPVVVI 234

Query: 248  MKAMGMESDQEVVQMVGR-DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----R 301
            +KAMGMESDQE+ ++V   D + + + + S+EE     + TQ++ALEY+   ++     +
Sbjct: 235  LKAMGMESDQEIAELVSSADLKIADIFVNSMEEPCAAHVKTQKQALEYVGQAIRAKQKAQ 294

Query: 302  STFGSP----PNDR-----EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
            S  GS     P+ R     E  A  +L  V L++VPV + +F  K  Y+  + RR++ A 
Sbjct: 295  SVDGSRSQYLPHSRRPVSIEDEAREVLAHVVLSHVPVEDYDFVAKRTYIGHVTRRVLAAS 354

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQ 412
            L+   +DDKDY GNKRLEL+GQL+SLLFEDLFK   ++++++ D++L K +R++ FD+ +
Sbjct: 355  LDNSLLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNADLKRSADLVLQKQNRTAVFDIVK 414

Query: 413  FIVR--DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
              V   D+I+ G    +STGN+ +KRFKM R G+TQVL+RLS++  +G MTRV+ QFEK+
Sbjct: 415  STVWRTDTISQGFVHAISTGNWVLKRFKMDRAGVTQVLSRLSYVSAIGMMTRVNSQFEKT 474

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
            RK SGPRALQ SQWGMLCP DTPEGE CGLVKNLAL+ HVTTD E       C+ LGVE 
Sbjct: 475  RKTSGPRALQLSQWGMLCPADTPEGETCGLVKNLALLAHVTTDAEVEKTKRSCFDLGVEQ 534

Query: 531  LELLSGEELH-NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
            L  L+G EL+ +P ++LV  NGL++G  RRP   A  +R +RR+ +IGEFVSV+ +   R
Sbjct: 535  LGYLNGAELNSHPGAYLVFLNGLVIGACRRPHKLARGLRCMRRSKRIGEFVSVYTHTVHR 594

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELL-------------DG----------- 625
             +Y+A DGGRVCRPL+IA  G SR+    +                 DG           
Sbjct: 595  AIYVACDGGRVCRPLIIATHGHSRLTAAQLATAFAKTYPNSNSQSKNDGDPNRLQSHAST 654

Query: 626  --VRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYP 683
              V + D     G+IEY+DVNEENN  IAL E + TP  TH+EI+P TILG+++GL+ +P
Sbjct: 655  QSVGTLDHLTTVGIIEYVDVNEENNCFIALDERELTPRHTHVEIDPVTILGIVSGLVAFP 714

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
            HHNQSPRNTYQCAMGKQAMG++A NQ  RMDSLLY LVYPQ+P++ +R ++LV +D L  
Sbjct: 715  HHNQSPRNTYQCAMGKQAMGSVATNQYERMDSLLYSLVYPQKPMVKSRVLDLVHFDALPG 774

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            G NAT+AVMSYSGYDIEDAIV+N++SLDRGF RC+V+K++    ++YAN   DR      
Sbjct: 775  GCNATLAVMSYSGYDIEDAIVLNRASLDRGFMRCLVIKRHQVSIRRYANGACDRT----- 829

Query: 804  TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 863
            TGP +  +  +         LD+DG+   GE +    + IN+E P+E R  +        
Sbjct: 830  TGPPSIEL-FLQGYVFRYSALDNDGICRVGEKLHDQSIMINREMPVEDRDELTPALPGRV 888

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
            S +      YK P     VVDRV L +++     +K ++R  RRPE+GDKF+SRHGQKGV
Sbjct: 889  SAFVVLH--YKSP--APSVVDRVLLTANETDQFLVKVMVRQCRRPEVGDKFASRHGQKGV 944

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
            CG IV QED PFS+ G+CPD+IMNPHGFPSRMTVGK+IEL+ GK GV  GR  YG+AFGE
Sbjct: 945  CGAIVSQEDMPFSDTGVCPDVIMNPHGFPSRMTVGKIIELVAGKCGVCSGRQAYGTAFGE 1004

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
             +G AD     S TL+KHGFSY GKDM+YSGI+G PL+ Y+FMGP++YQKLKHMV+DKMH
Sbjct: 1005 KTGSADCASEASCTLLKHGFSYIGKDMLYSGISGEPLRVYVFMGPVFYQKLKHMVMDKMH 1064

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GPR  LTRQPTEGR+R+GGLR+GEMERDCLI+YGA+ LI ERLM+SSD F+V VC 
Sbjct: 1065 ARARGPRAQLTRQPTEGRSRDGGLRLGEMERDCLISYGAANLITERLMISSDQFDVHVCE 1124

Query: 1104 VCGLLGYYNHKLKAGI-------CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             CGLLGY   +    I       C  C++ + ++ + +PYACKLL QELQSMN+ PRLKL
Sbjct: 1125 GCGLLGYSTAQNTERIDSTFTSWCQNCRSNEQMARICIPYACKLLFQELQSMNVTPRLKL 1184

Query: 1157 AE 1158
             +
Sbjct: 1185 ED 1186


>gi|312086795|ref|XP_003145218.1| RNA polymerase III 128kD subunit-PA [Loa loa]
          Length = 1040

 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/1062 (53%), Positives = 746/1062 (70%), Gaps = 39/1062 (3%)

Query: 111  MTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
            MTY+API V+IEY +GS      + +N +VIG++P+MLRS +CVL   +E+ELA + ECP
Sbjct: 1    MTYSAPISVDIEYTRGSQR----VLRNGLVIGKMPVMLRSSKCVLKNMNESELAHVQECP 56

Query: 171  LDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGK 230
             DPGGYFII+G+EKV+LIQEQLSKNR++I  + K  +   + SST+  KSKT I  +K +
Sbjct: 57   YDPGGYFIIRGSEKVVLIQEQLSKNRIMIGRNSKKELQCEILSSTQERKSKTYIASKKQR 116

Query: 231  MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEK 290
             Y+  NQ    +P+ +V KAMG ESD ++V  VG + ++ A + PSIEECA+  I TQE 
Sbjct: 117  YYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAVGLEEKFVAAMAPSIEECASHQIVTQEG 176

Query: 291  ALEYLEGKVKRSTFG------SPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            AL+Y+  KVK   FG      S    RE  A   L ++ +A+VP  + N + K  Y+ +M
Sbjct: 177  ALQYIASKVKMRKFGPFASGTSSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKAIYLGLM 236

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            +RR+++A +     DD+D+ GNKRLEL+G L++LLFED+FK   SE+++  D  L K + 
Sbjct: 237  IRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNSLGK-TL 295

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            ++  D+ + + +D IT  L   L+TGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR++
Sbjct: 296  AAPLDIVKHMRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYISVLGMMTRIN 355

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
              FEK+RKVSGPR+LQPSQWGMLCP DTPEGE+CGLVKNLAL++H+TTD +E P+I L Y
Sbjct: 356  STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEEPVIRLLY 415

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
              GVED++ L    +H+P   +V  NG+I+G    P+     +R +RR G + EFVSV  
Sbjct: 416  NSGVEDVKSLHFSAIHSPVYHIVFLNGVIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVST 475

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVN 644
            N  QR VYIASDGGR+CRP +I   G+ ++ + H++EL  G R F+DF+ +GLIEYLDVN
Sbjct: 476  NAAQRSVYIASDGGRLCRPYIIVKNGVPQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVN 535

Query: 645  EENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            E N+A IA+YE    P+TTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG 
Sbjct: 536  EMNDASIAVYENQIKPNTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 595

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
            I +NQ  R+DSL+YLLVYPQRPL+ T+TIE   ++KL AGQNA +AVMSYSGYDIEDA+V
Sbjct: 596  IGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAVIAVMSYSGYDIEDALV 655

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +NK+SLDRG+GRC+V K   A  +KY N T DR++ P  T     R  +  H      +L
Sbjct: 656  LNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGP--TVEATTRKPIYKHQ-----VL 708

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS--------RYRSARQTYKGP 876
            D +G+   G  I    V INK  P+ +  +  + +   D          Y+     Y+ P
Sbjct: 709  DQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTSSNNDGTNVSSHEVEYKDVSVVYRNP 768

Query: 877  DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
                   +RV L  +++    IK L+R TRRPELGDKFSSRHGQKGVCG I QQED PF+
Sbjct: 769  --VPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFN 826

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
            + G+CPD+IMNPHG+PSRMTVGK++ELL GK  V  G+FHYG+AFG      D V+ + E
Sbjct: 827  DLGMCPDMIMNPHGYPSRMTVGKLMELLSGKNAVLSGKFHYGTAFG-----GDQVDVVCE 881

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L   GF+Y GKDM+ SGITG  L AYI+ GPIYYQKLKHMVLDKMHAR  GPR +LTRQ
Sbjct: 882  ELAARGFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 941

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            PTEGRAR+GGLR+GEMERDCLIAYGASML+ ERLMVSSD F+V VC  CGL+GY      
Sbjct: 942  PTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDVCSQCGLIGY------ 995

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             G C  C++   ++++K+PYACKLL QELQSMNIVP++ L++
Sbjct: 996  KGWCQMCRSSRTMATIKIPYACKLLFQELQSMNIVPKISLSK 1037


>gi|336272055|ref|XP_003350785.1| hypothetical protein SMAC_02456 [Sordaria macrospora k-hell]
          Length = 1117

 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1129 (52%), Positives = 776/1129 (68%), Gaps = 46/1129 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  PV +  DKF L+P FLKV+GLVKQH+DS+NYFVN  I+ IV+AN  + S
Sbjct: 13   EPFYNGKKLTDPVSTKEDKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRS 72

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDGVS-EKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
              DP+ +L F+D+R+G P+ T DG   +  NP  CRL D+TYAAP+ V+I Y +    +K
Sbjct: 73   DQDPNFWLEFRDIRVGMPTRTEDGEQVQSRNP--CRLRDLTYAAPVEVDIAYTR----DK 126

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            + + + ++ + RIP+ML+S +C L G   A++    ECPLDPGGYF+I GTEKV+LIQEQ
Sbjct: 127  SVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKVILIQEQ 186

Query: 192  LSKNRVIIDTDKK-GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
            LSKNR+I++ D+K G + ASVTSST   KSKT + ++K ++ L  N   + IPI++V+KA
Sbjct: 187  LSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVVLKKDRIVLQHNTLSEPIPIVIVLKA 246

Query: 251  MGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFG 305
             G  SD +++++V G D RY    L + +E     +YTQ++ALEY+  +VK    R  FG
Sbjct: 247  FGGLSDNDIIELVCGGDARYQDDFLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFG 306

Query: 306  SPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            + P  +        L ++ +A+V V   +F PK  Y+A+M+RR++ A  N   +DD+D+V
Sbjct: 307  AAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFV 366

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVG 422
            GNKRLEL+GQL+SLLFEDLFK  IS+V+  +D    KP+R+S +D    I+ +   I+ G
Sbjct: 367  GNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANGHYISHG 426

Query: 423  LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            L R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPS
Sbjct: 427  LNRAIQSGNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPS 486

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGEELH 540
            QWGMLC  DTPEGEACGLVKNLALMTH+TT+  E P+  + +     V  +   +G E+H
Sbjct: 487  QWGMLCTSDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMH 546

Query: 541  NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRV 600
            +  S+++  NG      R PK FA   R LRR G +  FVS+ +NE    V+IA+D GR+
Sbjct: 547  SKGSYIIHLNGTPFAVTREPKRFAARFRTLRRRGWVSPFVSIHINEHFSAVHIATDEGRI 606

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP 660
            CRP +I   G S +K  H+K L  G  +FD FL  G++EYLDVNEEN+ L+AL E   T 
Sbjct: 607  CRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQITN 666

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
             TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLY L
Sbjct: 667  STTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTL 726

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
            VYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+SLDRGFGRC V 
Sbjct: 727  VYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVF 786

Query: 781  KKYTAINQKYANSTSDR---ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
            +KYTA  Q Y N   DR   I++ +   P      +  H+     ILD DGLA  G  ++
Sbjct: 787  RKYTAELQGYTNGRRDRVGGIMKDEDDKP------IAKHA-----ILDADGLAQVGSKVE 835

Query: 838  PNDVYINKESPLETRGS-IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
                 I KE+PL+   + I    G  D  YR A   Y+  D    ++D+V +  ++  + 
Sbjct: 836  SGQTMIKKETPLDQISTGIAGDRGSDD--YRDASTNYRISD--PAIIDKVMISVNERENK 891

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK   R TRRPELGDKFSSRHGQKGV G IV +ED PFS++G+ PD+IMNPHGFPSRMT
Sbjct: 892  LIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMT 951

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGK+ E L GKA V  G   YG  FG+ +  +  VES+ + L+ HGFS+ GKD   SGIT
Sbjct: 952  VGKLFECLTGKASVIAGEKDYG--FGD-AFRSHPVESMGQALIDHGFSWEGKDYFTSGIT 1008

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G P++AYI+ GPI+YQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1009 GEPMEAYIYNGPIFYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDC 1068

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            LIAYGAS L+ ERLM+SSD  E+ VC+ CGL GY       G C+ CK+
Sbjct: 1069 LIAYGASQLLLERLMISSDGTELDVCQECGLFGY------KGYCNACKS 1111


>gi|226287945|gb|EEH43458.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1209

 Score = 1155 bits (2989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/1180 (50%), Positives = 783/1180 (66%), Gaps = 115/1180 (9%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  P+ +  DK+ LLP FLKV+GLVKQH+DS+NYFV   ++KIV+A+  I S +DP+ 
Sbjct: 97   KSLTDPINTAKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNF 156

Query: 79   FLR--------------FKDVRIGQPSMTVD------GVSEKLNPHMCRLSDMTYAAPIL 118
            ++R              F D+ +G P    +        +  + P+ CRL DMTYA+PIL
Sbjct: 157  YIRSSAKTSHSVFRVFRFHDIYLGTPRRADEEQDSNFNAASTITPNECRLRDMTYASPIL 216

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            V+ EYV+G    +  +++N   IGR+P+MLRS +CVL  K EAE+  L ECPLDPGGYFI
Sbjct: 217  VDFEYVRG----RQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFI 272

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQ 237
            + GTEKV+L+QEQLSKNRVI++TD KK  + ASVTSS+   KSK+ I ++K ++Y+  N 
Sbjct: 273  VNGTEKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYIILKKERIYVRHNV 332

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
              + +PI++++KAMG++SD+E++ +V G D  Y      + EE   L IYTQ +ALEY+ 
Sbjct: 333  LNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQEDFAINFEEAVKLGIYTQHQALEYIG 392

Query: 297  GKVK----RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
             ++K     + FG    +    A   +  V +++V V N NFRPK  YVA M RR++ A 
Sbjct: 393  SRIKINRKPNNFGVIRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAK 452

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQ 412
             +   +DD+DYVGNKRLEL+GQL+SLLFEDLFK    +++  +D +L KP R+ +FD   
Sbjct: 453  HDPSLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYG 512

Query: 413  FIV--RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
             +    + IT G+ R +STGN+ +KRF+M R G+T VL+RLS+I  LG MTR+S QFEK+
Sbjct: 513  VVAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAALGMMTRISSQFEKT 572

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
            RKVSGPRALQPSQ+GMLCP DTPEGEACGLVKNLALMTH+TT++EE P+  L + LG ED
Sbjct: 573  RKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEEEPVRKLIFALGAED 632

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            ++ + G ELH   +++V  NG  +   RRPK F    R+LRR G++ EF+SVF+N  QR 
Sbjct: 633  VQTVGGRELHGQGAYIVFLNGSPIALTRRPKFFLHSFRRLRRTGRVSEFISVFINHHQRA 692

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNAL 650
            V+IA+D GR+CRPL+I + G S+++ HH++ L  G   FDDFL  GL+EYLD NEEN++ 
Sbjct: 693  VHIATDDGRICRPLIIVEDGKSKVQAHHLRALRSGSMEFDDFLAHGLVEYLDCNEENDSN 752

Query: 651  IALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
            IA+YE D    TTH+EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ 
Sbjct: 753  IAVYEDDIVDSTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQF 812

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             R+DSLLY +VYPQ+P++ TRTIEL+ YD+L AGQ ATVAVMSYSGYDIEDA+V+NK S+
Sbjct: 813  LRIDSLLYTMVYPQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSI 872

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            DRGFGRC V +KY+   + Y+N T D++  PDR       + V  H+     +LD+DGLA
Sbjct: 873  DRGFGRCQVFRKYSTNLKSYSNGTKDKLKGPDRENG----LPVRKHA-----LLDNDGLA 923

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR---YRSARQTYKGPDGETCVVDRVA 887
            A GE +   +VYINK +P     S +  TG    R   Y  + QTYK PD     +D+V 
Sbjct: 924  AVGEKVNHGEVYINKVTPENALSSGI--TGSDAGRPITYIPSPQTYKLPD--PSYIDKVM 979

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + S +  +  IK   R TRRPE+GDKFSSRHGQKGV G I +Q D PFS+ GI PD+IMN
Sbjct: 980  ISSTEAENQLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMN 1039

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PHGFPSRMTVGKM+EL+ GKAG+  G+F YG+AFG                         
Sbjct: 1040 PHGFPSRMTVGKMLELVAGKAGILSGQFSYGTAFG------------------------- 1074

Query: 1008 KDMIYSGITGCPLQ---------AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
                     G PL+         A   +G I  +++     DKMH+R  GPR +LTRQPT
Sbjct: 1075 ---------GSPLRKCLLSLSSMASRMVGRIASRRVSR---DKMHSRARGPRAILTRQPT 1122

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGR+R+GGLR+GEMERDCLIAYG S L+ ERLM+SSD +EV VC  CG +GY      +G
Sbjct: 1123 EGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDQYEVDVCESCGFMGY------SG 1176

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             C                  KLL+QEL SMN+V RLKLA+
Sbjct: 1177 WCQR---------------SKLLVQELFSMNVVARLKLAD 1201


>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
 gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
          Length = 999

 Score = 1155 bits (2987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1026 (55%), Positives = 741/1026 (72%), Gaps = 34/1026 (3%)

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            ++IGR+P+MLRS  CVL GK E EL++L ECPLDPGGYF+++G EKV+LIQEQLS N+++
Sbjct: 1    MLIGRMPLMLRSSNCVLSGKTEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKML 60

Query: 199  IDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             + D  G +   VTSST   KS+T++  + G+ YL  N     IPI+V+ KA+G+ SDQE
Sbjct: 61   TE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGRYYLKHNSMTDDIPIVVIFKALGIVSDQE 119

Query: 259  VVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK--VKR---STFGSPPNDREG 313
            ++  +G DP+       S+ E  NL I+TQ++AL+Y+  K  VKR   +T  +PP +   
Sbjct: 120  IMSHIGVDPQSQNRFGASLLEAFNLKIFTQQRALDYMGSKLVVKRFQSATTKTPPEE--- 176

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L    LA+VPV N NF+ K  YVA+M+RR++ A L+K   DD+DY GNKRLEL+G
Sbjct: 177  -ARDLLMTTILAHVPVDNFNFQMKAIYVALMVRRVMAAELDKTLFDDRDYYGNKRLELAG 235

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
             L+SL+FEDLFK M  E++   D  + K  ++++FD+ + +    IT GLE  +S+GN+ 
Sbjct: 236  SLISLMFEDLFKRMNWELKMIADKNIPK-VKAAQFDVVKHMRAAQITAGLESAISSGNWT 294

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+TQVL+RLS+I  LG MTRV+ QFEKSRKVSGPR+LQPSQWGMLCP DTP
Sbjct: 295  IKRFKMERGGVTQVLSRLSYISALGMMTRVNSQFEKSRKVSGPRSLQPSQWGMLCPSDTP 354

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGEACGLVKNLALMTH+TT+ +E P++ L Y  GVED+  +SG  ++NP+ FLV  NG +
Sbjct: 355  EGEACGLVKNLALMTHITTEVDEHPVMILAYNAGVEDIREVSGNPINNPHVFLVFINGNV 414

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            LG     K     MR +RR G+IG FVS+  +  QRCV++ +DGGR+CRP +I +K    
Sbjct: 415  LGLTLNHKHLVKNMRYMRRKGRIGSFVSIHTSYSQRCVFVHTDGGRLCRPYIIVEKCRPL 474

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +K+HH+ EL  G+R FDDFL +GLIEYLDVNEEN++ IA YE +  P TTH+EIEPFT+L
Sbjct: 475  VKQHHLDELQRGIRKFDDFLLDGLIEYLDVNEENDSFIACYEENINPTTTHLEIEPFTLL 534

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+Y LVYPQ P++ ++TI
Sbjct: 535  GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTI 594

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            EL  +DK+ AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++YAN 
Sbjct: 595  ELTNFDKVPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQ 654

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
            T DRI+ P +    A   +V+   +    +LD DG+ +PGE ++   + INKE P  T  
Sbjct: 655  TFDRIMGPVKD---ALTNKVIFKHD----VLDTDGIVSPGEQVQNKQIMINKEMPAVT-- 705

Query: 854  SIMSPTGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            SI    GQ+    Y +   +YKG   E   V+RV + ++   D  IK L+R TR PE+GD
Sbjct: 706  SINPLEGQSPQVPYTAVPISYKG--SEPSYVERVMVSANAEEDFLIKILLRQTRIPEIGD 763

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KFSSRHGQKGV G IV QED PF++ GICPD+IMNPHGFPSRMTVGK +ELLGGKAGV  
Sbjct: 764  KFSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGVLE 823

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+FHYG+AFG        V+ I   LV+HGF+Y GKD  YSGITG PL+AYI+ GP+YYQ
Sbjct: 824  GKFHYGTAFG-----GSKVQDIQAELVRHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQ 878

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KLKHMV DKMHAR  GP+ +LTRQPT+GR+R GGLR+GEMERDCLI+YGASMLI ERLM+
Sbjct: 879  KLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMI 938

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD FEV VCR+CG L Y         C  C++  ++S + +PYACKLL QEL SMN+VP
Sbjct: 939  SSDAFEVDVCRICGRLAY------CSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVP 992

Query: 1153 RLKLAE 1158
            +L L +
Sbjct: 993  KLILED 998


>gi|426373973|ref|XP_004053858.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gorilla
            gorilla gorilla]
          Length = 1031

 Score = 1154 bits (2984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1144 (52%), Positives = 756/1144 (66%), Gaps = 133/1144 (11%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            ++LAAP+ +V +K++LLP FLK+                                ++   
Sbjct: 14   EQLAAPIPTVEEKWRLLPAFLKL-------------------------------CLEIQG 42

Query: 79   FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
             +R+ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 43   IIRYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 98

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 99   ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 158

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KA       
Sbjct: 159  IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKA------- 211

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
                                              L+Y+  KV+R     G P   +   A
Sbjct: 212  ----------------------------------LKYIGNKVRRQRMWGGGPKKTKIEEA 237

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 238  RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 296

Query: 376  VS-LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            ++ +LF+D             D +        R  L  FI               GN+ +
Sbjct: 297  INDILFQD------------CDWV--------RNSLMSFISLQ------------GNWSL 324

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPE
Sbjct: 325  KRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 384

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GEACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN FLV  NG IL
Sbjct: 385  GEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNIL 444

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G  R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    +
Sbjct: 445  GVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAV 504

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LG
Sbjct: 505  TNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLG 564

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIE
Sbjct: 565  VCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE 624

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T
Sbjct: 625  LIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQT 684

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  
Sbjct: 685  FDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIP 737

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
            +         +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKF
Sbjct: 738  LEGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKF 795

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GR
Sbjct: 796  SSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGR 855

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
            FHYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKL
Sbjct: 856  FHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKL 910

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SS
Sbjct: 911  KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISS 970

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRL
Sbjct: 971  DAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1024

Query: 1155 KLAE 1158
            KL++
Sbjct: 1025 KLSK 1028


>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
 gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
          Length = 1137

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/1135 (51%), Positives = 778/1135 (68%), Gaps = 37/1135 (3%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            +K++L+PEFLK++GLVKQH DSFNYF+   I+KIV AN  + S +DP+ +L++ DV +G 
Sbjct: 26   NKWKLVPEFLKIKGLVKQHTDSFNYFIKVDIKKIVEANQYVRSDVDPNFYLKYLDVEVGV 85

Query: 90   PSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P +     V     P  CRL DMTY+API V IEY +G+      + K D++IGRIPIML
Sbjct: 86   PEIEEGLDVKRASTPQECRLRDMTYSAPITVTIEYTRGNER----IIKKDLIIGRIPIML 141

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
            +S  CVLYGKDE EL++L ECPLDPGGYFI+KG E+V+LI+EQL KN ++++ D KGN  
Sbjct: 142  QSANCVLYGKDEYELSKLNECPLDPGGYFIVKGQERVILIREQLLKNSLVVEKDSKGNPC 201

Query: 209  ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPR 268
            A V SST   KSKT I ++K K YL  N F   IP+ V+ K  G+ESD E    VG +  
Sbjct: 202  AHVMSSTHEKKSKTNIIIKKDKFYLRHNAFSDDIPLAVIYKGFGVESDIEFFMSVGIEQE 261

Query: 269  YSALLLPSIEECANLDIYTQEKALEYL--EGKVKRSTFGS--PPNDREGRAFSILRDVFL 324
            Y   L+PS+EEC  L+I TQ +AL Y+  + KVKRS  GS   P +    A  IL +  L
Sbjct: 262  YHEKLIPSMEECHKLNICTQTQALRYIGNKTKVKRSLPGSGGKPKNVVDDAGDILANTIL 321

Query: 325  ANVPVHNNNFRPKC---FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
            A+V V +  FR  C    Y+ +M+RR+++A  +     D D+ GNKRLEL+G ++ LLFE
Sbjct: 322  AHVDVLD--FRCMCEKTQYLGLMVRRILQAETDPRFYTDLDHYGNKRLELAGAMLGLLFE 379

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
            D  K    E++   D ++ K  ++++FD+ + + +D IT G    +STGN+ +KRF+MH 
Sbjct: 380  DFLKRYNLELKMIADKMIPK-IKAAQFDIVKHLRQDFITNGFSNAISTGNWTIKRFRMHT 438

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
            +G+TQVL+RLS+I   G MTRV+  FEK+RKVSGPR+L  +QWGMLCP DTPEGEACGLV
Sbjct: 439  QGVTQVLSRLSYISAFGMMTRVNSHFEKTRKVSGPRSLHATQWGMLCPSDTPEGEACGLV 498

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLALM H++T   E P+  +    G+     ++ E++  P++F+V  NG +LG    PK
Sbjct: 499  KNLALMCHISTLSSELPIKQIAQLCGIIPPMRMNMEQILAPDTFMVFLNGSLLGITYEPK 558

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKE 621
                 +RK+RR+GK+  FVS+ ++   R VYI SD GR+CRP +I + G+  I +  + +
Sbjct: 559  KLCKKLRKIRRSGKLNPFVSISLHALHRTVYIFSDSGRLCRPYIIIENGVPLITKSDLND 618

Query: 622  LLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIP 681
            L    + F DFL +G+IEY+DVNEEN++LIALYE D TP  TH+EI PFT+LGV A +IP
Sbjct: 619  LERKFKKFIDFLDDGVIEYMDVNEENDSLIALYEKDITPKHTHLEIAPFTLLGVCASIIP 678

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            YPH+NQSPRNTYQCAMGKQAMG I +NQ  R+D+LLY +VY Q+P++ T+ + +V YDKL
Sbjct: 679  YPHNNQSPRNTYQCAMGKQAMGAIGYNQENRIDTLLYNMVYTQKPMVITKPMVMVNYDKL 738

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA V VMSYSGYDIEDA+++NK+SL+RG+GRC V +    + ++YA+ TSDRI  P
Sbjct: 739  PAGQNAIVCVMSYSGYDIEDALIINKASLERGYGRCQVFRNTKCVLKRYADGTSDRIQGP 798

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
                    R  +  H      +LD DG+ APGE I    V INK  P  +  S +   G+
Sbjct: 799  --LVDAETRKPLWKHG-----VLDTDGIGAPGEKILNRQVLINKSVPSRSNTSNVPIFGE 851

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             D  Y      YKG   E   +D+V + ++ + D  IK  +R TR PE+GDKFSSRHGQK
Sbjct: 852  RD--YIDTPVDYKGL--EHSYIDKVLISTNSDDDSLIKIKLRQTRIPEIGDKFSSRHGQK 907

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            GV G IV+QE+ PF+E GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  G+ HYG+AF
Sbjct: 908  GVVGLIVEQENMPFNESGICPDVIMNPHGFPSRMTVGKLIELLAGKAGVVTGKHHYGTAF 967

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            G       TV  + E LVK+ F+Y GKD++YSGITG P++ Y++ GP++YQ+LKHMV DK
Sbjct: 968  G-----GSTVSEVQEELVKNKFNYEGKDILYSGITGEPMEVYVYSGPVFYQRLKHMVQDK 1022

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GPR +LTRQPTEGRA +GGLR+GEMERDCLIAYGAS +I ERLM+SSD F+  V
Sbjct: 1023 IHARARGPRAVLTRQPTEGRAADGGLRLGEMERDCLIAYGASSMISERLMISSDAFQCDV 1082

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            C  CGL+ Y      +  C  CK+   IS++KLPYA KLL QEL+SMNIVPRL L
Sbjct: 1083 CNECGLIAY------SKWCHGCKSSKEISTIKLPYATKLLFQELRSMNIVPRLSL 1131


>gi|443917907|gb|ELU38513.1| DNA-directed RNA polymerase III subunit [Rhizoctonia solani AG-1 IA]
          Length = 1248

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1169 (50%), Positives = 783/1169 (66%), Gaps = 77/1169 (6%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L  P+KSV      L    +V+GLVKQH+DSFNYFV+  +  I++AN++++S +DP  +L
Sbjct: 70   LMDPIKSVEVSIIDLRLPAEVKGLVKQHIDSFNYFVDVDLANILKANNKVLSDVDPKFWL 129

Query: 81   RFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            ++  + +G P+   D   + + PH CRL D TYAA I V+++Y +G+      + +  V 
Sbjct: 130  KYTGIHVGMPTRNDDSFDKSVTPHECRLRDTTYAATITVDVQYTRGN----VIVRRKGVP 185

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IGR+PIMLRS +CVL G+ EA LAR+ ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+I++
Sbjct: 186  IGRLPIMLRSNKCVLAGQSEASLARMTECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVE 245

Query: 201  TDK-KGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            TD  KG + ASVTSST   KSKT + M+K ++YL  N   + IP+ + +KAMG+++D+E+
Sbjct: 246  TDPVKGIVQASVTSSTHERKSKTYVLMKKNRIYLRHNSINEDIPVCIALKAMGIQADKEI 305

Query: 260  VQM-VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFG---SPPNDREGRA 315
            + +  G    + +   P++E+CA   ++T ++ALEY+  +VK +  G    P       A
Sbjct: 306  LLLCAGTTEAHKSAFAPNLEDCALAGVFTTQQALEYIGSRVKVTRRGFQAGPKRPVWEEA 365

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               L  + LA+V V   +F+ K  Y+A M RR++ AM ++  +DD+DYVGNKRLEL+GQL
Sbjct: 366  MEALATIVLAHVEVKGMDFKHKAIYIATMTRRVLMAMADEKLVDDRDYVGNKRLELAGQL 425

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLERTLSTGNFD 433
            +SLLFED+FKT    ++ ++D +L KPSR+S FD  Q ++   D IT G  R +STGN+ 
Sbjct: 426  LSLLFEDIFKTFNQNLKSSIDKVLKKPSRTSEFDAYQSLLYQSDLITSGFVRAISTGNWS 485

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRFKM R G+T VL+R   +      +  S     S  VSGPRALQPSQWGMLC  DTP
Sbjct: 486  LKRFKMERAGVTHVLSRYVKLNLASVYSSSSVPPLDS--VSGPRALQPSQWGMLCTSDTP 543

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED---LELLSGEELHNPNSFLVIFN 550
            EGEACGLVKNLALMTH+TTD EE P+  + Y LGVED   +   +G E+++P++F+V  N
Sbjct: 544  EGEACGLVKNLALMTHITTDVEEEPIKKIVYMLGVEDDTDITFSTGAEIYSPHTFVVNVN 603

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G I+G  R P  F    RKLRR+G+I EF+SV++N     V+IASDGGR+CRP++I +  
Sbjct: 604  GSIVGLTRFPARFVANFRKLRRSGRISEFISVYINHHHHTVHIASDGGRICRPMIIVENE 663

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPF 670
              R++  H+  L  GV +FDDFL++G IEYLDVNEEN++ IALYE    P TTH+EIEPF
Sbjct: 664  RPRVRTEHINLLKRGVVTFDDFLKKGSIEYLDVNEENDSHIALYESSIEPSTTHLEIEPF 723

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            TILG +AGLIPYPHHNQSPRNTYQCAMGKQ++G IA+NQL R+D+LLYL VYPQ+P++ T
Sbjct: 724  TILGAVAGLIPYPHHNQSPRNTYQCAMGKQSIGAIAYNQLNRIDTLLYLSVYPQQPMVKT 783

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT--AINQ 788
            +TIEL+GYD+L AGQNATVAVMSYSGYDIEDA+++NK          +  + +T   + +
Sbjct: 784  KTIELIGYDRLPAGQNATVAVMSYSGYDIEDALILNK----------LRSRLWTMPGVQE 833

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            +      DR+    R   G+ + +          I+  DG+A  GE + P DVY+NK+SP
Sbjct: 834  ERDTHPFDRLADAPREADGSVQKRYD--------IIQADGIAGVGERVDPGDVYVNKQSP 885

Query: 849  LETRGSIMSPTGQTDS---RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
            +    +  + TG+  S    YR+   +YK P      +D+V L    N    +K L+R T
Sbjct: 886  INANDNTFN-TGEGASASISYRNTPMSYKSP--MAGYIDKVMLTDTDNDQTLVKVLLRQT 942

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPELGDKFSSRHGQKGVCG IV QED PF+++GI PD IMNPHGFPSRMTVGKMIELL 
Sbjct: 943  RRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLA 1002

Query: 966  G------------------KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            G                  KAGV  G   YG+AFG        VE +S  L+ +GFSY G
Sbjct: 1003 GKVSGCMRFTISPMPHQNTKAGVLSGSLQYGTAFG-----GSKVEDMSRILIDYGFSYAG 1057

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQK------LKHMVLDKMHARGSGPRVMLTRQPTEGR 1061
            KDM+ SGITG P++ Y++ GPIYYQ       ++HMV+DKMHAR  GPR +LTRQPTEGR
Sbjct: 1058 KDMLTSGITGEPMECYVYFGPIYYQLRSNRNFIEHMVMDKMHARAKGPRAVLTRQPTEGR 1117

Query: 1062 ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS 1121
            +R+GGLR+GEMERDCLI YGA+ L+ ERLM+SSD FE+  C  CGL+GY       G C 
Sbjct: 1118 SRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFEINACETCGLMGY------NGWCP 1171

Query: 1122 TCKNGDNISSMKLPYACKLLIQELQSMNI 1150
             CK+   ++ + +PYA KLL QEL  + I
Sbjct: 1172 YCKSSKKVAKLTIPYAAKLLFQELTCVGI 1200


>gi|221059854|ref|XP_002260572.1| DNA-directed RNA polymerase [Plasmodium knowlesi strain H]
 gi|193810646|emb|CAQ42544.1| DNA-directed RNA polymerase, putative [Plasmodium knowlesi strain H]
          Length = 1401

 Score = 1150 bits (2975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/1214 (47%), Positives = 812/1214 (66%), Gaps = 101/1214 (8%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIF 79
            +  +K+V +K++LLP +LKV+GLVKQH++S+NYF+   I+ I+ A  N  + S ID   +
Sbjct: 213  SKDIKNVTEKWKLLPAYLKVKGLVKQHIESYNYFIKHEIKTIMNATTNKILKSDIDEHFY 272

Query: 80   LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            + F D+ +G+P +  + +   L P +CR  D+TY+API V++EYV+GS+     + KN+V
Sbjct: 273  VEFLDIFVGRPLVEENMIETNLTPQICRQRDLTYSAPIYVDVEYVKGSNI----IRKNNV 328

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+P+MLRS  C+L  K E EL +LGECP DPGGYFI+KGTE+VLL+QEQLSKNR+I+
Sbjct: 329  EIGRLPVMLRSDICILNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIV 388

Query: 200  DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            + D K NI A++TS+T   KS+  I  +  K+YL  N F++ I + ++++AMG ESDQE+
Sbjct: 389  EMDIKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEI 448

Query: 260  VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGS-----PPN 309
             QM+G    Y   +L S+ +  + +I T   AL Y+  K++     +  F S       N
Sbjct: 449  FQMIGSHRNYLNGILLSLYDLYSENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKN 508

Query: 310  DRE--GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
            +++        L  V L+++   N  +FR K   + +M+RR++++  NK+ +DDKDY GN
Sbjct: 509  EKDIIEEGLDFLSRVLLSHIQQKNKYDFRNKARCICLMIRRVLDSANNKNELDDKDYYGN 568

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRF--------------DLSQ 412
            KRLEL+GQL+SLLFEDL+K     ++K +D  LSK  +S+                D+ +
Sbjct: 569  KRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYSGNVNETYPDVFR 628

Query: 413  FIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
             + +D IT G++  +STGN+++KRFKM + G++QVL+RLSFI  +G MTR++ QFEK RK
Sbjct: 629  SLPKDIITRGMQAAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRK 688

Query: 473  VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP-LISLCYCLGVEDL 531
            VSGPRALQPSQWG+LCPCDTPEGE+CGLVKNLALMTHVT D E    LI + Y LGVED 
Sbjct: 689  VSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNEHLIEILYTLGVEDS 748

Query: 532  ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCV 591
            + L+GEE++    F VIFNG++LG H++P+ F   +R LRR GKIG+FVS++ N   + +
Sbjct: 749  DSLTGEEMYKEGIFFVIFNGILLGVHKKPRIFMRRIRCLRRYGKIGQFVSIYDNFLHKAI 808

Query: 592  YIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALI 651
            YI++DGGR+CRPL+I + G S++ + H+  L +G  +F D L+  +IE++DVNE+NN LI
Sbjct: 809  YISTDGGRLCRPLIIVENGKSKLTQEHILSLENGTINFFDLLKSSVIEWIDVNEQNNLLI 868

Query: 652  ALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
            AL E D + +T+H+EI+P TILGV+AGLIPYP+HNQSPRNTYQCAMGKQA+G I +NQ  
Sbjct: 869  ALNESDISINTSHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFV 928

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R D+LLYLLVYPQ+PL+ ++TIE + ++KL AGQNA VAVMS+ GYDIEDAIVMNKSS+D
Sbjct: 929  RCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFGGYDIEDAIVMNKSSID 988

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRIL-------------------------------R 800
            RGFGRC+ ++K+    +KY N ++D +L                               +
Sbjct: 989  RGFGRCMSLRKHAVELKKYFNGSNDLVLPSPLAISKMQERQEKRRQEKLSQSQDKQRQAK 1048

Query: 801  PDR------TGPGAERMQVVHHSNLLLL-ILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
             +R       G   +  +  H+  +     LD DG+ + G ++K   VYINK SP   + 
Sbjct: 1049 EERDHVENGAGTNVDEQKKFHNKEIKKYHALDMDGVVSIGYLLKEGQVYINKYSPRNVKD 1108

Query: 854  SI-------MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
             +       ++     + +Y+S   +Y         +D++    +  G    K ++R TR
Sbjct: 1109 HVKDISKIDLNDLKANEIKYKSVYPSY---------IDKIIFTENAEGLKIYKIIMRQTR 1159

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             PELGDKFSSRHGQKGV G +V QED PF+E GICPDLIMNPHGFPSRMTVGK++EL+  
Sbjct: 1160 LPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVAS 1219

Query: 967  KAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            K+ V  G   YGS F G P       E ++  L K+GF+ + K+++YSG+TG PL+ YIF
Sbjct: 1220 KSAVLDGELKYGSIFSGTP------FEEMASILFKYGFNCSSKELLYSGLTGEPLETYIF 1273

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            MGPIYYQKLKHMV DK+HAR  GPR +LTRQPTEGR++ GGLR+GEMERDCLIAYG S L
Sbjct: 1274 MGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNL 1333

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERLM+SSD  +V +C  CG++GY  +      C+ C+  D  + +K+PYACKLL QEL
Sbjct: 1334 LLERLMLSSDVCDVYICEDCGMMGYDTY------CTFCQKCDKNALVKMPYACKLLFQEL 1387

Query: 1146 QSMNIVPRLKLAEA 1159
            Q+MN+ P++ + E 
Sbjct: 1388 QTMNVFPKIVVKET 1401


>gi|83282218|ref|XP_729674.1| DNA-directed RNA polymerase, subunit beta [Plasmodium yoelii yoelii
            17XNL]
 gi|23488130|gb|EAA21239.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            yoelii yoelii]
          Length = 1323

 Score = 1147 bits (2967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/1203 (48%), Positives = 806/1203 (66%), Gaps = 90/1203 (7%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIF 79
            +  + ++ +K++LLP +LKV+GLVKQH++S+NYF+   I+ I+ A  N  I S ID   +
Sbjct: 146  SKSINTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFY 205

Query: 80   LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            L F D+ +G+PS+  + +   L P +CR  D+TY+API V++EY++G+    + + KN+V
Sbjct: 206  LEFLDISVGRPSIEENMIESNLTPQICRQRDLTYSAPIYVDVEYIKGN----SIVTKNNV 261

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IGR+P+MLRS  CVL  K+E EL +LGECP DPGGYFI+KGTE+VLL+QEQLSKNR+I+
Sbjct: 262  EIGRLPVMLRSDICVLNNKNENELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIV 321

Query: 200  DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            + D K NI A++TS+T   KS+  I  +  K+YL  N F + I + ++++AMG ESDQE+
Sbjct: 322  EMDIKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFTEDIGVCIILRAMGYESDQEI 381

Query: 260  VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGS-----PPN 309
             QM+G    Y   +L S+ +    +I T   AL Y+  K++     +  F S       N
Sbjct: 382  FQMIGSHKMYLNGILLSLYDLYTENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKN 441

Query: 310  DRE--GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
            +++        L  V L+++   +  +FR K   + +M+RR++++  NK+ +DDKDY GN
Sbjct: 442  EKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNELDDKDYYGN 501

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRF------------------ 408
            KRLEL+GQL+SLLFEDL+K     ++K +D  LSK  +SS                    
Sbjct: 502  KRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSSYNSKLKNNSSIGGNNNFSDN 561

Query: 409  ---DLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
               D+ + + +D IT G++  +STGN+++KRFKM + G++QVL+RLSFI  +G MTR++ 
Sbjct: 562  SYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNS 621

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP-LISLCY 524
            QFEK RKVSGPRALQPSQWG+LCPCDTPEGE+CGLVKNLALMTHVT D +    LI + Y
Sbjct: 622  QFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNDNNENLIEILY 681

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
             LGVED + L+GEE++    F V+ NG++LG HR+P  F   +R LRR GKIGEFVS++ 
Sbjct: 682  TLGVEDSDSLTGEEMYKEGVFFVVLNGILLGVHRKPHKFMKRIRCLRRFGKIGEFVSIYD 741

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVN 644
            N     +YI++DGGR+CRPL+I + G S++   H+K L  G  +F D L+  +IE++DVN
Sbjct: 742  NFLHNAIYISTDGGRLCRPLIIVENGKSKLLNSHIKALESGEINFFDLLKSSVIEWIDVN 801

Query: 645  EENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            E+NN LIAL E D   +TTH+EI+P TILGV+AGLIPYP+HNQSPRNTYQCAMGKQA+G+
Sbjct: 802  EQNNLLIALNEKDINLNTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGS 861

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
            I +NQ  R D+LLYLL+YPQ+PL+ ++TIE + ++KL AGQNA V+VMS+ GYDIEDAIV
Sbjct: 862  IGYNQFIRCDTLLYLLIYPQKPLVKSKTIEFINFEKLPAGQNAIVSVMSFCGYDIEDAIV 921

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ--VVHHSNLLLL 822
            MNKSS+DRGFGRC+ ++K+    +KY N ++D +L    +    ++MQ      SN  L 
Sbjct: 922  MNKSSIDRGFGRCMSLRKHFIELKKYFNGSNDIVLPSPLSISKQQQMQKKTGKESNDNLA 981

Query: 823  ------------------ILDDDGLAAPGEIIKPNDVYINKESPLETRGSI--MSPTGQT 862
                               LD DG+ + G ++K   VY+NK SP+  +  +  MS     
Sbjct: 982  NTKEDPRKTINSELKKYHSLDADGVVSIGYLLKEGQVYVNKYSPINVKDHVKDMSKLDLN 1041

Query: 863  D-----SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
            D      +Y+S   +Y         VD++    +  G    K ++R +R PELGDKFSSR
Sbjct: 1042 DFKLSEVKYKSVYPSY---------VDKIIFTENGEGLKIYKIIMRQSRLPELGDKFSSR 1092

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G +V QED PF+E GICPDLIMNPHGFPSRMTVGK++EL+  K+ V  G + Y
Sbjct: 1093 HGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVSSKSAVLDGEYKY 1152

Query: 978  GSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            GS F G P       E  +E L ++GF+++ K+++YSG+TG PL+ YIFMGPIYYQKLKH
Sbjct: 1153 GSIFSGTP------FEEAAEVLFRYGFNWSCKELLYSGLTGEPLETYIFMGPIYYQKLKH 1206

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GPR +LTRQPTEGR++ GGLR+GEMERDCLIAYG S L+ ERLM+SSD 
Sbjct: 1207 MVQDKIHARSRGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDV 1266

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             +  +C  CG++GY         C+ CK  D    +K+PYACKLL QELQ+MN+ P++ +
Sbjct: 1267 CDAYICEDCGMMGY------DSCCTFCKKYDKNVVVKMPYACKLLFQELQTMNVFPKIIV 1320

Query: 1157 AEA 1159
             E 
Sbjct: 1321 KET 1323


>gi|342879891|gb|EGU81124.1| hypothetical protein FOXB_08398 [Fusarium oxysporum Fo5176]
          Length = 1150

 Score = 1147 bits (2966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/1160 (50%), Positives = 778/1160 (67%), Gaps = 54/1160 (4%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+G   + ++     + T             S
Sbjct: 13   EPFYNGKKLTDPISTKEDKFQLLPAFLKVKG---KDVNQPGTLIPT------------TS 57

Query: 73   GIDPSIFLRFKDVRIGQP---SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
                   + F D+R+  P     T +    ++ P  CRL DMTYAAPI V+I+Y++    
Sbjct: 58   SWSRRSRISFTDIRVDSPRRQDWTDNKSHSEVTPMECRLRDMTYAAPIFVDIQYIR---- 113

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K  + + +V +GR+P+ML+S +C L G +  ++  + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 114  DKQRIVRKNVPLGRMPVMLKSSKCRLAGANNTQMEEMNECPLDPGGYFIIGGTEKVILIQ 173

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNR+I++ D+K NI +ASVTSST   KSKT + ++K ++ L  N  V+ IPI++++
Sbjct: 174  EQLSKNRIIVEADEKNNIISASVTSSTHERKSKTYVTLKKDRILLTHNVLVEGIPIVIIL 233

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK----RST 303
            KA+G  SD E++Q+V G D RY    L + +E     ++TQ +ALEY+  KVK    R T
Sbjct: 234  KALGGLSDMEIMQLVAGSDGRYQDEFLVNFDEATKAGVFTQHQALEYIGAKVKMGSRRGT 293

Query: 304  FGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            FG  P  R          L ++ +A+VP+   +F PK  YVA M RR++ A  N   +DD
Sbjct: 294  FG--PQVRRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVAQMTRRVLIAAHNPKLVDD 351

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DS 418
            +D+VGNKRLEL+GQL+SLLFEDLFK   S V+ ++D  L K +R+   D    I    ++
Sbjct: 352  RDFVGNKRLELAGQLLSLLFEDLFKQFTSGVKMSIDKFLKKNNRAVPLDAVHMISNHANN 411

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            I  G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRA
Sbjct: 412  IGYGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 471

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSG 536
            LQPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+ +E P+    + L  GVE +   SG
Sbjct: 472  LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVDEEPVKRWIFTLDAGVEPIRNFSG 531

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+H   S+++  NG      R PK FA   R +RR G I  FV + +N     V+IA+D
Sbjct: 532  AEMHREGSYIIHINGTPFALTRYPKRFAQKFRTMRRRGWISPFVGININTHFNAVHIATD 591

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+CRP +I   G  ++K  H++ L  G  +FDDFL  G++EYLDVNEEN+ALI +YE 
Sbjct: 592  EGRICRPYIIVKNGKQKLKPEHLRLLQMGKATFDDFLNRGIVEYLDVNEENDALITIYED 651

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              T  TTH+EIEPFT+LG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+L
Sbjct: 652  QVTQSTTHLEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTL 711

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
            LY LVYPQRP++ ++TI+L+GYDKL AGQNATV VMSYSGYDIEDA+V+NK+S+DRGFGR
Sbjct: 712  LYTLVYPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGR 771

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
            C V +KYT   QKY N   +RI  P+  G G  + ++  H       LDDDGLA  G  +
Sbjct: 772  CQVFRKYTTELQKYPNGRRERIGDPENEGDGKIKRRIAKHE-----ALDDDGLAIVGYKV 826

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
               +  + KE+PL+   + +    +  + +R +  +Y+  D     +D+V +   +    
Sbjct: 827  NSGEAMVKKETPLDQTSTGIG-LDRGPAEFRDSSVSYRIAD--PAYIDKVMISQTEKDTT 883

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             IK   R TRRPELGDKFSSRHGQKGV G IV+QED PFS+ G+ PD+IMNPHGFPSRMT
Sbjct: 884  VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMT 943

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            VGK++E L GKA +  GR  YG  FG+ +  +  +E +S+ LV HGFS+ GKD   SGIT
Sbjct: 944  VGKLLECLTGKASIVHGRPDYG--FGD-AFRSHPLEEMSQVLVDHGFSWEGKDYFTSGIT 1000

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G PL+AY+F GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 1001 GEPLEAYVFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDC 1060

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LIAYGAS L+ ERLM+SSD  E+ +C+ CGL GY       G C TCK+   ++ M +PY
Sbjct: 1061 LIAYGASQLLLERLMISSDGTEIDICQQCGLFGY------KGYCHTCKSTREVTKMTMPY 1114

Query: 1137 ACKLLIQELQSMNIVPRLKL 1156
            A KLL+QEL SMN+  RL++
Sbjct: 1115 AAKLLVQELISMNVGVRLQM 1134


>gi|167382955|ref|XP_001733337.1| DNA-directed RNA polymerase III subunit RPC2 [Entamoeba dispar
            SAW760]
 gi|165901325|gb|EDR27409.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
            dispar SAW760]
          Length = 1115

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1072 (52%), Positives = 765/1072 (71%), Gaps = 33/1072 (3%)

Query: 21   LAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFL 80
            L   + +V DK++L+P F+K RGLV+QH+DSFNYF++  I++IV+AND+I    DP+ +L
Sbjct: 32   LGRAINTVEDKWRLIPAFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPTFYL 91

Query: 81   RFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            ++ DV++  P + VD   E + P  CRL D++Y APIL NI+Y +     + T     V 
Sbjct: 92   KYLDVKVDTPCVEVDYKKESITPQECRLRDISYTAPILANIQYTRDKKIFRKT-----VT 146

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG +PIML+S  CVLY     E  R GECP+DPGGYFI+KG E+V+L QEQ+SKNR++I+
Sbjct: 147  IGYMPIMLQSKHCVLYNNTFEEFIRHGECPMDPGGYFIVKGVERVILSQEQMSKNRILIE 206

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            T  +G ++ASVTS+T  VKS+TV+ ++KGK+YL  N   + +PIM+V+KAMGMESD E +
Sbjct: 207  TTTQGFLSASVTSATHEVKSRTVVYLKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFL 266

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST-----FGSPPNDREGRA 315
            Q VG    Y++ ++ SIEEC   D+  Q +AL Y+   +K  T         P   E R 
Sbjct: 267  QFVGN--HYTSKMINSIEECKTKDVLNQREALRYIGNHLKIYTGQKGYISKRPKIEEAR- 323

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L ++ L ++ V+  NF+ K  Y+A+M+  +++A      +DDKDY GNKR+EL+GQL
Sbjct: 324  -DVLANLVLPHIEVNRYNFKTKIIYLALMVNWILKAD-ETGELDDKDYYGNKRMELAGQL 381

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            +SLLFEDLFK   +++Q   +  L+K SRS  FD+ + I    IT GL  +LSTGN+ +K
Sbjct: 382  MSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLK 441

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF M R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQ SQWGM+CP DTPEG
Sbjct: 442  RFNMDRAGITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEG 501

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            E+CGLVKN +L+T VTTD ++  ++++ + LGVED  L+SG+E++  +S+LV  NG +LG
Sbjct: 502  ESCGLVKNFSLLTEVTTDSDDQAIVTMLFNLGVEDANLISGDEVNALSSYLVFLNGQLLG 561

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
             H+ P  F    R LRR G++G+ VS+ +NE QR + I+SDGGRVCRPL++ +   S+I 
Sbjct: 562  IHQNPIHFLKQCRLLRRHGRLGKKVSLHLNEMQRSINISSDGGRVCRPLIVVENCKSKIG 621

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
               ++++++G +S +D L+EGLIEYLDVNEENN+ IA+ E +    TTH+EI+P +ILGV
Sbjct: 622  PKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAISENEINEHTTHLEIDPLSILGV 681

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AGLIPYPHHNQSPRNTYQCAMGKQA+G I +NQ  R+D+LLYLL YPQ P++ T+TI++
Sbjct: 682  VAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQIPMVKTKTIDM 741

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + +DKL AGQNA VAVMSYSGYDIEDA ++NK+S+DRG+GRC V +K   + +KY N   
Sbjct: 742  INFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKKYKNGAC 801

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DR++ P       ER    + S      LD DG+ +PG I+ P  +Y+NK+ P+ T G++
Sbjct: 802  DRVVCP----TDEERELPKYKS------LDFDGVCSPGSILNPGSIYLNKQVPINTVGTL 851

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
             + T + D  YR    TYKGP      VD+V + S++   L +K  +R +RRPELGDKFS
Sbjct: 852  TTDTIK-DDEYRREVLTYKGP--VPSYVDQVLITSNEEEPLKVKISLRTSRRPELGDKFS 908

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV QED PF+  GICPD+IMNPHGFPSRMTVGK++EL+ GKAG+  G F
Sbjct: 909  SRHGQKGVTGLIVNQEDMPFTNTGICPDVIMNPHGFPSRMTVGKLLELVSGKAGLMDGSF 968

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
             YG+AFG      D ++ +S+ L++ G+SY+GK+ +YSGITG  L AYIF+GP+YYQKLK
Sbjct: 969  KYGTAFG-----GDKLDDMSKILIEAGYSYDGKEELYSGITGKALNAYIFIGPVYYQKLK 1023

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            HMVLDKMHAR  GP+  LTRQPTEGR+R+GGLR+GEMERDCLI YGA+ L+ 
Sbjct: 1024 HMVLDKMHARARGPKSSLTRQPTEGRSRDGGLRLGEMERDCLIGYGATNLLL 1075


>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1160

 Score = 1132 bits (2927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1166 (50%), Positives = 790/1166 (67%), Gaps = 46/1166 (3%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + ++L  P+ +  DK+QLLP FLKV+GLVKQH+DS+NYFV   I+KIV AN  I  
Sbjct: 15   EPFYNGKRLTDPINTKQDKYQLLPAFLKVKGLVKQHIDSYNYFVEEDIKKIVEANRVIRC 74

Query: 73   GIDPSIFLRFKDVRIGQPSMTVDG-----VSEKLNPHMCRLSDMTYAAPILVNIEYVQGS 127
              +PS +L F D+R+G+P+   +       S  ++P  CRL D TYAAP++V+I Y +  
Sbjct: 75   DQEPSFWLEFTDIRVGKPTRNENSQLQWQSSTTVSPMECRLRDATYAAPVVVDIAYPKNG 134

Query: 128  HTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
                  + KN V + RIP+ML+S +C L G + A +  L ECPLDPGGYFI+ GTEKV+L
Sbjct: 135  ---VRNIRKN-VQLCRIPVMLKSSKCYLNGANNARMEELNECPLDPGGYFIVGGTEKVIL 190

Query: 188  IQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
            IQEQLSKNRVI++ D KG + ASVTSST   KSKT + ++K ++ L  N  V+ IPI++V
Sbjct: 191  IQEQLSKNRVIVEKDDKGGVQASVTSSTHERKSKTYVVLKKDRILLTHNILVEAIPIVIV 250

Query: 248  MKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +KA+G  SD +++++V G D RY    L + E+ A   +YTQ++ALEY+  +VK      
Sbjct: 251  LKALGGLSDYDIMELVAGGDSRYQDDFLINFEDAAKAGVYTQQQALEYVGARVKMGGPKK 310

Query: 307  P-PNDREG-------RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
            P P    G            L ++ +A+V V + +F PK  Y+A+M+RR++ A+ N + +
Sbjct: 311  PSPKFSAGPRRNPIEEGLDALSNLIVAHVTVKDLDFYPKTIYIAMMVRRILMAVHNPELV 370

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VR 416
            DD+D+VGNKRLEL+GQL+SLLFEDL K  I +++  ++    +P+R+S +D    I    
Sbjct: 371  DDRDFVGNKRLELAGQLLSLLFEDLLKGFIGQLKANMEHFFKRPNRTSAYDPIGPIGSYG 430

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GL R + +GN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGP
Sbjct: 431  TMITQGLNRAIQSGNWTVKRFGMNRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGP 490

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELL 534
            RALQPSQWGMLC  DTPEGEACGLVKNLALMTH+TT+  E  +      L  G+  +E  
Sbjct: 491  RALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTEAGEEKVKKCVSTLIEGIRLIEEC 550

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            SG E+H  N+F++  NG           F    ++ RR G +  F+ +  +     ++IA
Sbjct: 551  SGTEMHEENAFIIHVNGTPYALTLDAAAFTKRFKQFRRRGVLSAFIGIHTSHATASIHIA 610

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            +D GR+CRP +I + G S ++  H+  L     +F+DFL++G++EYLDVNEEN+ALIA++
Sbjct: 611  TDEGRICRPYIIVENGKSMLEAAHLDLLRHKKATFEDFLKKGVLEYLDVNEENDALIAVH 670

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            E D    TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D
Sbjct: 671  ESDINDQTTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGFIAYNQQNRID 730

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            +L Y LVYPQRP++ T+TI+L+ YDKL AGQNATV VMSYSGYDIEDA+V+NK+S DRGF
Sbjct: 731  TLHYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGF 790

Query: 775  GRCIVVKKYTAINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            GRC V KKYT    +Y N   DR+  ++ D  G   +R  V          LD+DGLA P
Sbjct: 791  GRCQVFKKYTTELLQYPNRNKDRLGGVQRDEDGKAKDRHAV----------LDNDGLATP 840

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +K  D+ I KE+P++   + +    +  + +R    +YK  D    +VD+V + + +
Sbjct: 841  GMKMKDGDIMIMKETPVDQTSTNIGEDRKI-TEFRPCPISYKIKD--PAIVDKVVITTKE 897

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +G   +K   R TRRPELGDKFSSRHGQKGV G IV QED PFS++G+ PD+IMNPHGFP
Sbjct: 898  SGTPLLKVRTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDKGLTPDIIMNPHGFP 957

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMTVGK+ E L GKA V  GR  YG  FG+ +  +  VE + + L++HGFS+ GKD   
Sbjct: 958  SRMTVGKLFECLTGKASVVAGRREYG--FGD-AFRSHPVEEMGKVLIEHGFSWEGKDYFT 1014

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            SGITG P +AY+F GPI+YQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEM
Sbjct: 1015 SGITGEPHEAYLFNGPIFYQRLKHMVADKMHSRSRGPRAVLTRQPTEGRSRDGGLRLGEM 1074

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERDCLIAYGAS L+ ERLM SSD  +V VC  CGL+GY       G C TCK   N++ M
Sbjct: 1075 ERDCLIAYGASQLLLERLMYSSDVTKVDVCERCGLMGY------KGYCQTCKTTSNVTKM 1128

Query: 1133 KLPYACKLLIQELQSMNIVPRLKLAE 1158
             +PYA KLL+QEL SMN+  R++L +
Sbjct: 1129 NMPYAAKLLLQELISMNVGVRMQLED 1154


>gi|189194954|ref|XP_001933815.1| DNA-directed RNA polymerase III subunit RPC2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187979694|gb|EDU46320.1| DNA-directed RNA polymerase III subunit RPC2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1167

 Score = 1131 bits (2925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1146 (51%), Positives = 763/1146 (66%), Gaps = 94/1146 (8%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + +  P+ +  DK+ LLP FLK +GLVKQH+DS+N+FV+  ++KI++ N  + S  DP  
Sbjct: 88   KSMTDPINTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRSDFDPKF 147

Query: 79   FLRFKDVRIGQPSMT----VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
             L + D+R+  P+      +D     + P+ CRL DMTYAAPI+V+I Y +G+   K T 
Sbjct: 148  LLEYTDIRVLAPNRQEEDDLDHHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRT- 206

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
                + IGR+PIML+S +CVL GK++ ++A +GECPLDPGGYFI +G EKV+L+QEQL+K
Sbjct: 207  ---GIKIGRMPIMLKSNKCVLAGKNDNDMAVMGECPLDPGGYFITRGQEKVILVQEQLNK 263

Query: 195  NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
            NRVI+++  KG + ASVTSST   ++KT +  +KG MYL  N   ++IPI+ VMKA+G+ 
Sbjct: 264  NRVIVES-AKGIMQASVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVA 322

Query: 255  SDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPN-D 310
            SD+E++ MV G D  Y      + E CA  +I+TQE+ALEY+  +V+  +   G+  N +
Sbjct: 323  SDKEILTMVAGEDSAYQDNFSINFEACAKEEIFTQERALEYIGHRVRLVKKPLGTSRNRN 382

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
                A   L +V L +VPV   N+RPK  YVA+M RR++ AM N   +DD+DYVGNKRLE
Sbjct: 383  YHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLE 442

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIV-RDSITVGLERTLS 428
            LSGQ++SLLFED FK    + + ++D +L KP R+  FD  S F V ++ IT+G+ER ++
Sbjct: 443  LSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPVRAQEFDAFSHFSVHKNHITMGVERAIA 502

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRFKM R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC
Sbjct: 503  TGNWSLKRFKMDRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 562

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              DTPEGEACGLVKNLALMTH+TT++++ P+  + + LG +D+  L+GE++H    + + 
Sbjct: 563  TSDTPEGEACGLVKNLALMTHITTEDDDDPVRKIVFMLGAQDICSLTGEDIHAEGVYSLC 622

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +    RPK F +  R LRR G++ EF S+ ++     V+IA+D GR+CRP++I +
Sbjct: 623  LNGTPIAVTDRPKHFLNSFRGLRRMGRVSEFTSIHIDHDHCEVHIATDEGRICRPMIIVE 682

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
               S++   ++K L  G   F+DFL  GL+EYLD NEEN+  IAL E D    TTH+EIE
Sbjct: 683  NQRSKVTSRYLKALRKGTLDFEDFLTRGLVEYLDTNEENDTNIALKETDINQHTTHLEIE 742

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PFTILG +AGLIPYPHHNQSPRNTYQCA                MD+LLYL+VYPQ+P++
Sbjct: 743  PFTILGAVAGLIPYPHHNQSPRNTYQCA----------------MDTLLYLMVYPQQPMV 786

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL  YDKL AGQNATVAVMSYSGYDIEDA+++NK+S DRGFGRC V+KK+    +
Sbjct: 787  KTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLK 846

Query: 789  KYANSTSDRI----LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
             YAN TSDRI    L PD     A               +  DG+A  G  I+  D Y+ 
Sbjct: 847  TYANGTSDRINAGALDPDNKNHQA---------------IGKDGIAQVGARIEAGDAYLL 891

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K  P++T G    P   T   Y+   + YK PD     +D+  +  ++ G   IK L R 
Sbjct: 892  KSIPVDTAG----PPSNT---YKDKPEKYKNPD--YSYIDKTCVTENEAGVTLIKLLFRQ 942

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPELGDKFSSRHGQKG  G IVQQED PF+++GICPD+IMNPHGFPSRMTVGKM+ELL
Sbjct: 943  TRRPELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELL 1002

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAGV  G   YG+AFG       TVE +S+ LV  GFSY GKD + SGITG   Q Y 
Sbjct: 1003 SGKAGVLNGTLEYGTAFG-----GSTVEDMSKILVDKGFSYTGKDYLTSGITGEAHQFYT 1057

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GPIYYQKLKHMV DKMH+R  GPR +LTRQPTEGRAR+GGLR+GEMERDCLIAYG   
Sbjct: 1058 FFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYG--- 1114

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
                                 G +GY      +G C  C++   +  + +PYA KLLIQE
Sbjct: 1115 ---------------------GQMGY------SGYCKLCESEKAVRKITMPYAAKLLIQE 1147

Query: 1145 LQSMNI 1150
            L SMNI
Sbjct: 1148 LGSMNI 1153


>gi|307178142|gb|EFN66950.1| DNA-directed RNA polymerase III subunit RPC2 [Camponotus floridanus]
          Length = 1120

 Score = 1126 bits (2912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1142 (50%), Positives = 784/1142 (68%), Gaps = 41/1142 (3%)

Query: 28   VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRI 87
            + +K +L+  FLK +GLVKQH+DS+NYF+N  I+ IV+AN++++S  D   ++++ ++R+
Sbjct: 6    IKNKAKLVEAFLKDKGLVKQHIDSYNYFINKEIKNIVKANEKVLSSEDAHFYIKYLNIRV 65

Query: 88   GQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            G P +  DG  V +   PH CRL D+ Y+API+V+IE+++ +   + T    ++VIGR+P
Sbjct: 66   GLPDID-DGSNVMKSTTPHECRLRDLNYSAPIIVDIEHIRNNQRIRNT----NMVIGRMP 120

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            +MLRS  CVL  K   ELA+L ECP DPGGYF+I G EKV+LIQEQ+ +NR+I++ D K 
Sbjct: 121  VMLRSSNCVLTNKSHYELAKLNECPHDPGGYFVINGQEKVILIQEQMVRNRIIVEEDGK- 179

Query: 206  NINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
             I AS  S T   K+KT I  + GK Y+  N F   I I VV KAMG+ SD +++QM+G 
Sbjct: 180  EIIASCNSFTHEKKTKTSIVGKAGKYYIRNNMFQDDILITVVFKAMGIVSDIDIIQMIGE 239

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
              +Y    +  IE C  L I+++++AL+YL  K +R T  +     +      ++D+  A
Sbjct: 240  KEKYLDKFIACIENCQELGIFSEKQALKYLNNK-RRQTRSAQSYAAKFSVIDEMKDLLAA 298

Query: 326  NV----PVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
            NV    PV + NFR K  ++A+M+RR+++A  +++ +D+KDY GNKRLEL+G L++L+FE
Sbjct: 299  NVLSHVPVIDFNFRTKALHLALMIRRVIDAQSDRNLIDNKDYYGNKRLELAGSLLALMFE 358

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
            DLFK    E++   D  + K  +++ FD++++I +D+IT GL   +S+GN+ +KRF+M R
Sbjct: 359  DLFKRFNWELKMIADKNIPK-VKAAPFDITKYIRKDTITNGLAFAISSGNWTIKRFRMER 417

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G+TQVL+RLS+I  LG MTRV  QFEK+RK+SGPRAL  SQWGMLCP DTPEGEACGLV
Sbjct: 418  HGVTQVLSRLSYISALGMMTRVHSQFEKTRKISGPRALHGSQWGMLCPNDTPEGEACGLV 477

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLALM H+TT+  EGP I L   LGV+ +    G EL   + ++V  NG + G  +   
Sbjct: 478  KNLALMAHITTEMPEGPFIKLMRNLGVQIIYTCVGGELIKKDIYVVFVNGNMAGIIKESL 537

Query: 562  CFADV--MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM 619
                V   R LRR G I  FVS+ V  + +CV ++ DGGR+CRPL+I   G   I+E HM
Sbjct: 538  VLQLVHQFRLLRRMGYIDCFVSISVQRRHKCVQVSCDGGRLCRPLIIVKDGKPLIEEKHM 597

Query: 620  KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGL 679
              L   + +F+DF+  GLIEYLDVNEEN++LIA  E +    TTH+EI  FTILGV AGL
Sbjct: 598  NYLEMNLWTFNDFVHAGLIEYLDVNEENDSLIACKESEIIAQTTHLEIAEFTILGVCAGL 657

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IPYP+HNQSPRNTYQCAMGKQA+G I +NQ  R+D+L+Y LVYPQRP++ TR IEL+ +D
Sbjct: 658  IPYPNHNQSPRNTYQCAMGKQAIGAIGYNQRNRIDTLMYNLVYPQRPIVKTRQIELINFD 717

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            KL AG+NA VAVMS+SGYDIEDA+++NK+S+DRG+GRC+V +    I + + N   D IL
Sbjct: 718  KLPAGENALVAVMSFSGYDIEDALILNKASIDRGYGRCLVYRNSKCIIKNHPNQVMDVIL 777

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
               ++     +  +  H      IL++DG+AA G +++   V +NK   + TR   + P+
Sbjct: 778  --GQSLDAITKKPIPKHD-----ILENDGIAAAGVMVENKKVMVNK--AVSTRSGNLGPS 828

Query: 860  GQTDSR---YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
               + +   YRSA  +YKG       +++V + S+      IK L+R TRRPE+GDKFSS
Sbjct: 829  RSDNFQSQDYRSAEVSYKG--SVPAYIEKVMVSSNAENAFLIKLLLRQTRRPEIGDKFSS 886

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGV G IV QED PF++ GICPD+IMNPHGFPSRMTVGK+IE+L GKAG+  G+FH
Sbjct: 887  RHGQKGVVGLIVDQEDLPFNDYGICPDVIMNPHGFPSRMTVGKLIEVLAGKAGIVNGKFH 946

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              +AF         VE + E L +HG++Y GKD+ YSG+ G P+  Y+F GP+YYQKLKH
Sbjct: 947  DATAF-----EGAKVEDLCEELAQHGYNYLGKDLFYSGMNGQPITGYLFFGPVYYQKLKH 1001

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H R  GP+V+LTRQPTEGR+++GGLR+GEMERDCLI YGASML+ ERLM+SSD 
Sbjct: 1002 MVQDKIHVRAKGPKVILTRQPTEGRSKDGGLRLGEMERDCLIGYGASMLLIERLMLSSDS 1061

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            F+V +C  CGL+GY       G C  C +  +IS++ +PYACKLL QELQ MNI+PRL L
Sbjct: 1062 FQVDICNKCGLMGY------NGWCQRCSSSSSISTITMPYACKLLFQELQCMNILPRLTL 1115

Query: 1157 AE 1158
             +
Sbjct: 1116 KD 1117


>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1008

 Score = 1121 bits (2900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1024 (54%), Positives = 728/1024 (71%), Gaps = 33/1024 (3%)

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD- 202
            +P+MLRS +CVL  K  AE+  L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+I++TD 
Sbjct: 1    MPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDP 60

Query: 203  KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
            KK  + ASVTSS+   KSK+ I ++K K+Y+  N   + IPI++++KAMG+ +D+E++ +
Sbjct: 61   KKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKAMGIHTDKEMLLL 120

Query: 263  V-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---AFSI 318
            V G D  Y      + EE   L IYTQ++AL+++  ++K +  G   N R      A   
Sbjct: 121  VAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRIKINR-GKQNNYRRTHVQEAVEA 179

Query: 319  LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            +  V ++++ V + NFRPK  YVA M RR++ A  +   +DD+DY+GNKRLEL+GQL++L
Sbjct: 180  IASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLAL 239

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERTLSTGNFDVKR 436
            LFEDLFK    +++  VD +L+K +R+  FD    +   S  IT G+ R +STGN+ +KR
Sbjct: 240  LFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGNWSLKR 299

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            F+M R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRALQPSQ+GMLC  DTPEGE
Sbjct: 300  FRMERAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCLADTPEGE 359

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLALMTH+TT++EEGP+ +L + LG ED+  L G+EL+ P  + +  NG  +  
Sbjct: 360  ACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDISTLGGKELYGPGCYTISINGTPMAL 419

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
             RRPK F +  R+LRR G+I EFVS+++N  QR V++A+D GR+CRPL++ + G +R++ 
Sbjct: 420  TRRPKSFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVENGKNRVRS 479

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
            HH+K+L +G  SFDDFL +GL+EYLDVNEEN++LIA+YE D T  TTH+EIEPFT+LG +
Sbjct: 480  HHLKKLREGTMSFDDFLAQGLVEYLDVNEENDSLIAIYEKDITEATTHLEIEPFTVLGAV 539

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQA+G IA NQ  R+DS+LYL+VYPQ+P++ +RTIEL 
Sbjct: 540  AGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELT 599

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             YD+L AG NA VAVMSYSGYDIEDA+V+NK S+DRGFGRC V KK  A  + Y+N T D
Sbjct: 600  KYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKD 659

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
             ++ P+       R            +L+ DGLAA GE +   +VYINK +P ++  S  
Sbjct: 660  ILMPPEYDNDAPIRKHA---------LLESDGLAAVGEQVNAGEVYINKSTPDQSLASGF 710

Query: 857  --SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
              S  G+   +Y     TYK  D     +D+V + + +N +  IK L R TRRPE+GDKF
Sbjct: 711  PGSDMGRP-VKYTPTPMTYKLHD--PAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKF 767

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGV G I  Q D PF+++GI PD+IMNPHGFPSRMTVGKM+EL+ GKAGV  G+
Sbjct: 768  SSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKAGVLAGQ 827

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
              YG+ FG        VE +S+ L+  GFSY GKD + SGITG  L  Y+F GPIYYQKL
Sbjct: 828  HGYGTCFG-----GSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKL 882

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV DKMH+R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG S L+ ERLM+SS
Sbjct: 883  KHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISS 942

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D  E+ VC  CG +GY N       C  CK+  ++  M +PYA KLLIQEL SMN+  RL
Sbjct: 943  DRHEIDVCEQCGFMGYLNW------CQRCKSSRSVVKMAIPYAAKLLIQELMSMNVTARL 996

Query: 1155 KLAE 1158
            KL +
Sbjct: 997  KLED 1000


>gi|268563827|ref|XP_002647022.1| Hypothetical protein CBG24045 [Caenorhabditis briggsae]
          Length = 1078

 Score = 1118 bits (2892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1100 (51%), Positives = 746/1100 (67%), Gaps = 61/1100 (5%)

Query: 91   SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRS 150
            S   +G S   +   CRL DMTY+API V+IEY +G       + K D+VIGR+PIMLRS
Sbjct: 3    SGQANGRSRNKSESECRLRDMTYSAPISVDIEYTRGHQR----VYKKDLVIGRMPIMLRS 58

Query: 151  CRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAS 210
             +C+L    E ELAR+ ECP DPGGYF++KG+EKV+LIQEQLSKNR+++  +    +   
Sbjct: 59   SKCILRDLAEEELARVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCE 118

Query: 211  VTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS 270
            V SST   KSKT + ++KGK  +  NQ    +P+ ++ KAMG+ESD ++V  +G + +Y 
Sbjct: 119  VLSSTSERKSKTYVTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYV 178

Query: 271  ALLLPSIEECANLDIYTQEKALEYLEGKVKR---STFGSPPND--------REGRAFSIL 319
            +    ++EEC N  +YTQ++AL Y+  KVK    + FGS P          +E  A   L
Sbjct: 179  SAFAQTLEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTAPKEHEAVDFL 238

Query: 320  RDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLL 379
             +  + ++   + NF+ K  Y+  M RR+++  + ++ +DD+D+ GNKRLEL+G L++LL
Sbjct: 239  SNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALL 298

Query: 380  FEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKM 439
            FED+FK   SE+++  D  L K + ++  D+ + + +D IT  +   +STGN+ +KRF+M
Sbjct: 299  FEDVFKRFNSELKRIADNALMK-TMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRM 357

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             R G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGMLCP DTPEGEACG
Sbjct: 358  ERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACG 417

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLAL++H+TTD +E P++ L    GVEDL  +    ++ P + L+  NG+++G    
Sbjct: 418  LVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVD 477

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM 619
            P+     +R LRR+G + EFVSV  +   R V+I+SDGGR+CRP +I   G   + E H+
Sbjct: 478  PERVVKAVRDLRRSGLLSEFVSVSRSMTNRSVFISSDGGRLCRPYIIVRHGKPMLTETHV 537

Query: 620  KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGL 679
            +EL +G R F+DF+ +G++EYLDVNE N+ALIA+YE +   +TTH+EIEPFT+LGV AGL
Sbjct: 538  QELKEGKRIFEDFVDDGIVEYLDVNEMNDALIAVYENEIGAETTHLEIEPFTLLGVCAGL 597

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IPYPHHNQSPRNTYQCAMGKQAMG IA+NQ  R+DS++YLL YPQRPL+ ++TIEL  ++
Sbjct: 598  IPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFE 657

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            KL AG N  +AVMSYSGYDIEDA+V+NK+SLDRG+GRC+V K      +KY N T DR+L
Sbjct: 658  KLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDRLL 717

Query: 800  RPDRTGPGAERMQ---VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
                 GP  + +    +  H N     LD +G+   G  I P    INK  P+ +  S  
Sbjct: 718  -----GPAVDSVTLKPIFKHKN-----LDQEGIVFTGARILPKQTIINKYMPVVSAESGS 767

Query: 857  SPTGQT------DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
            + +  T      D  Y+    TYK P       +RV L  +++     K L+R TRRPEL
Sbjct: 768  AASANTIGIAGRDVAYKDVSITYKTPT--PSYAERVLLTYNEDEAHLFKVLLRQTRRPEL 825

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGVCG I QQED PF++ G+ PD+IMNPHG+PSRMTVGK++ELL GKAGV
Sbjct: 826  GDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGV 885

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G +HYG+AFG      D V+ + E L   G++Y GKDM+ SGITG PL AYI+ GPIY
Sbjct: 886  MNGTYHYGTAFG-----GDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSAYIYFGPIY 940

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKLKHMVLDKMHAR  GPR  LTRQPTEGR+R GGLR+GEMERDCLIAYGASML+ ERL
Sbjct: 941  YQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERL 1000

Query: 1091 MVSSD-------------PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            MVSSD             P EV VC  CG++G        G C  C++  +++++K+PYA
Sbjct: 1001 MVSSDEFKVLFRSFVPLIPIEVDVCTGCGVIG------SKGWCQKCRSSKSMANIKIPYA 1054

Query: 1138 CKLLIQELQSMNIVPRLKLA 1157
            CKLL QELQSMNIVPRL LA
Sbjct: 1055 CKLLFQELQSMNIVPRLDLA 1074


>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
 gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
          Length = 1048

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/1070 (52%), Positives = 742/1070 (69%), Gaps = 47/1070 (4%)

Query: 106  CRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELAR 165
            CRL DMTYAAP++V+I Y +    ++  + + D+ + RIP+ML+S +C L G   A++  
Sbjct: 3    CRLRDMTYAAPVVVDIAYSR----DRKKIIRRDIPLCRIPVMLKSAKCCLSGATNAQMEI 58

Query: 166  LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQ 225
            + ECPLDPGGYFII GTEKV+LIQEQLSKNRVI++ D KG ++ASVTSST   KSKT + 
Sbjct: 59   MNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADDKGGVSASVTSSTHERKSKTYVI 118

Query: 226  MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLD 284
            ++K ++ L  N  V+ IPI++V+KA+G  SD E++++V G D RY    L + +E     
Sbjct: 119  LKKDRIALNHNVLVEPIPIVIVLKALGGLSDYEIMELVAGGDARYQDDFLINFDEATKAG 178

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRA---------FSILRDVFLANVPVHNNNFR 335
            +YTQ++ALEY+  +VK    G P   R G A            L ++ +A+V + + +F 
Sbjct: 179  VYTQQQALEYIGVRVK---MGGPKKGRPGTAPRRSPVEEGLDALANIIIAHVTIEDLDFY 235

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV 395
            PK  Y+A+M+RR++ A  N   +DD+D+VGNKRLEL+GQL+SLLFEDLFK  ++ ++  +
Sbjct: 236  PKAIYIAMMVRRVLMAAHNPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKMFVASLKGNM 295

Query: 396  DIILSKPSRSSRFDLSQFIVRD--SITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSF 453
            +    KP+R+S +D    I     SIT GL R + +GN++VKRF M+R G+T VL+RLS+
Sbjct: 296  EYFFKKPNRTSAYDPVGPISTQGQSITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSY 355

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
            I  +G MTR+S QFEK+RKVSGPRALQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+
Sbjct: 356  IAVVGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTN 415

Query: 514  EEEGPLISLCYCL--GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
             EE P+ +  + L  GV+ + + +G E+H P ++++  NG      R PK FA   + +R
Sbjct: 416  AEEQPVRNWIFGLIEGVQPIRMFTGTEMHKPGTYIIHLNGTPFALTRHPKQFAARFKTMR 475

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD 631
            R G I  FVS+ +NE    ++IA+D GR+CRP +I   G S++K  H++ L  G  +F+D
Sbjct: 476  RRGHISPFVSIHINEHFSAIHIATDEGRICRPYIIVKDGKSKLKPEHLRLLQLGKATFED 535

Query: 632  FLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
            FL+ G+IEYLDVNEEN+ALIA+ E D    TTH+EIEPFTILG +AGLIP+PHHNQSPRN
Sbjct: 536  FLKRGVIEYLDVNEENDALIAISEDDINQSTTHLEIEPFTILGAVAGLIPFPHHNQSPRN 595

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQCAMGKQA+G IA+NQ  R+D+LLY LVYPQRP++ T+TI+L+ YDKL AGQNATV V
Sbjct: 596  TYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVV 655

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI--LRPDRTGPGAE 809
            MSYSGYDIEDA+V+NK+S DRGFGRC V +KY A   +Y N   DR+  ++ D  G    
Sbjct: 656  MSYSGYDIEDALVLNKASCDRGFGRCQVFRKYAAELLQYPNGRKDRLGGIQKDEEG---- 711

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRS 868
               +  H+      LD DGLA  G  +   +  I KE+P+ +T   I S  G  D  +R 
Sbjct: 712  -RTIAKHA-----CLDKDGLAIVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDD--FRP 763

Query: 869  ARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIV 928
            A   Y+ PD     +D+V + + +     IK   R TRRPELGDKFSSRHGQKGV G IV
Sbjct: 764  APVNYRTPD--PAYIDKVMVSNTEKDTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIV 821

Query: 929  QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHA 988
             QED PFS+ G+ PD+IMNPHGFPSRMTVGK+ E L GKA V  GR  YG  FG+ +  +
Sbjct: 822  DQEDMPFSDSGVVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAGRRDYG--FGD-AFRS 878

Query: 989  DTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSG 1048
              VE +   LV+HGFS+ GKD   SGITG P +AY+F GPIYYQ+LKHMV DKMH+R SG
Sbjct: 879  HPVEEMGRVLVEHGFSWEGKDYFTSGITGDPHEAYLFNGPIYYQRLKHMVQDKMHSRSSG 938

Query: 1049 PRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL 1108
            PR +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS L+ ERLM SSD   V +C  CGLL
Sbjct: 939  PRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMYSSDATRVDICEWCGLL 998

Query: 1109 GYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            GY       G C TCK+   ++ M +PYA KLL+QEL SMN+  R++L +
Sbjct: 999  GY------KGYCQTCKSTSQVTQMTMPYAAKLLVQELISMNVGVRIELED 1042


>gi|307204008|gb|EFN82912.1| DNA-directed RNA polymerase III subunit RPC2 [Harpegnathos saltator]
          Length = 1081

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1092 (50%), Positives = 754/1092 (69%), Gaps = 42/1092 (3%)

Query: 74   IDPSIFLRFKDVRIGQPSM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            + P    R+ D+ IG+P    +++ +  KL PH CRL D+TYAAPI+V+IEY++G+    
Sbjct: 10   VKPHFHSRYLDIHIGEPIFDESLNDI-RKLYPHECRLRDLTYAAPIIVDIEYIRGNQP-- 66

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
              + KN++VIGR+PIMLRS  C L G    EL+   ECP DPGGYFIIKG EKV+LIQEQ
Sbjct: 67   --IIKNNIVIGRMPIMLRSANCRLTGLTAHELSTKDECPHDPGGYFIIKGQEKVILIQEQ 124

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
            + +NR++++ D K NI A   SST   K+KT I  + G+ Y+  N F   I + +V KAM
Sbjct: 125  MVRNRILLEKDNKENIVAYCNSSTHERKTKTSIIGKSGRYYMKHNIFQDDILVTIVFKAM 184

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            G+ +DQ +V ++G +  + + L  S+ EC +L+I+TQ +AL YL  K  +     P    
Sbjct: 185  GIHTDQNIVMLIGTEHEFQSKLEWSLRECHDLNIFTQNQALMYLNSKRTQ-----PRVFN 239

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
                  +L    L++VPV N +F+ K  ++A M+R+++ A  NK  +DD+D+VGNKRLE+
Sbjct: 240  ANEMKDVLATNVLSHVPVKNFSFKLKGIHLAFMVRKVIMAQSNKKLLDDRDFVGNKRLEV 299

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L+SL+FEDLFK    E+++  D  + K  ++++FD+ + + +D IT GL   +STGN
Sbjct: 300  AGSLLSLMFEDLFKRFNWELKQIADKNIPK-IKAAQFDIVKHMRQDQITNGLLFAISTGN 358

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + +KRFKM R+G TQVL+RLS+I  LG MTRV  QFEK+R+VSGPR+L  SQWGMLCPCD
Sbjct: 359  WKIKRFKMERQGATQVLSRLSYISALGMMTRVHSQFEKTRQVSGPRSLHLSQWGMLCPCD 418

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE+CGLVKNLALM H+TTDE E  +  L   L +++++ L  +E+++ + +LV+ NG
Sbjct: 419  TPEGESCGLVKNLALMAHITTDEPEDHIAWLLSTLDMQEIQSLGSQEINHKDEWLVLLNG 478

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
            +I G     K     ++ LRR G I  FVS+++ +  RCV+I++DGGR+CRP  I + G 
Sbjct: 479  VIQGVTSHYKKLVHTLKTLRRRGYISSFVSIYMQDNHRCVHISTDGGRLCRPYFIVENGR 538

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +   HMK     +  F+DFL+ G+IEYLDVNEEN+ LIAL E +   +TTH+EIE FT
Sbjct: 539  LVVTAEHMKLFQQKILKFEDFLQTGMIEYLDVNEENDVLIALDENEIQAETTHMEIETFT 598

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILGV AGLIPYPHHNQSPRNTYQCAMG+QA G I +NQ  RMD+++Y LVYPQ P++ T+
Sbjct: 599  ILGVCAGLIPYPHHNQSPRNTYQCAMGRQAAGTIGYNQRKRMDTVMYNLVYPQAPIVRTK 658

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            T E++ Y++L AG+NA VA+MSY GYDIEDA+V+N++SLDRG+GRC++ +   A+ ++Y 
Sbjct: 659  TSEMIKYNELPAGENAIVAIMSYGGYDIEDALVVNRASLDRGYGRCLIYRSTKAVLKRYP 718

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DRI+ P        ++   H       ILD DG+A PGE ++   V +NK  P ++
Sbjct: 719  NQTYDRIMGPS-LDSNTNKVAWKHD------ILDADGIAMPGERVEDKKVLVNKSVPSQS 771

Query: 852  -----RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
                  GS  SP  Q    YR A   YKG   E   V++  L S+ +    IK L+R TR
Sbjct: 772  IDRVNTGSDASPKTQ----YRDAEIYYKGL--EPAYVEQSLLTSNADDSFLIKLLLRQTR 825

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
            RPE+GDK SSRHGQKGV G+IV  ED PF+++GI PD+IMNPHGFPSRMTVGK+IE+L G
Sbjct: 826  RPEIGDKLSSRHGQKGVIGSIVNPEDLPFNDQGIVPDIIMNPHGFPSRMTVGKLIEILAG 885

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K G+  G FH  +AFG        V+ +SE + KHG++Y GKD  YSGITG P++AYI+ 
Sbjct: 886  KVGILNGEFHDSTAFG-----GSKVDDLSEQMQKHGYNYLGKDCFYSGITGEPMEAYIYT 940

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            G +YYQ+LKHMV DK+HAR  GPRV++TRQPTEGR+++GGLR GEMERDCL+AYGASM++
Sbjct: 941  GTVYYQRLKHMVQDKIHARAKGPRVVMTRQPTEGRSKDGGLRFGEMERDCLVAYGASMML 1000

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERLM+SSD  +V VC  CGL+GY      +G C +C++  NISS+ +PYACKLL+ ELQ
Sbjct: 1001 IERLMLSSDGVKVDVCNSCGLMGY------SGWCQSCRSNSNISSVTMPYACKLLLHELQ 1054

Query: 1147 SMNIVPRLKLAE 1158
            SMNIVPRLKL +
Sbjct: 1055 SMNIVPRLKLRD 1066


>gi|313221111|emb|CBY31939.1| unnamed protein product [Oikopleura dioica]
          Length = 1110

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/1151 (48%), Positives = 758/1151 (65%), Gaps = 94/1151 (8%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKD 84
            +  V +K++L+P FL+ RGLVKQHLDSFNY +  G++KI++AN R  + +D + F  +  
Sbjct: 31   ISEVQEKWKLVPAFLETRGLVKQHLDSFNYLLTQGLQKIIKANAR--TDVDQNFFWNYDH 88

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
            + +  P +     SE + PH CRL DMTY+API V++ YV+ +   K       +VIGR+
Sbjct: 89   IYVDPPDVEYGMRSEAITPHECRLRDMTYSAPIKVDVTYVRDNQIRKA----RGLVIGRM 144

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS RCVL    + +  +  ECPLDPGGYF++KG EKVLL+QEQ   NR++++ DK 
Sbjct: 145  PIMLRSARCVLANMSQEQFFKAKECPLDPGGYFVVKGAEKVLLMQEQAVSNRILVEKDKT 204

Query: 205  GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
            G   A V S ++T  ++T +   K K+Y+  N+  + + ++V+ KA+G+E DQE+ +++ 
Sbjct: 205  GMFCAVVKSKSDTANTQTNLIQSKNKIYVKQNKLREPVNVVVLFKALGIERDQEIAELIA 264

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK--------VKRSTFGS-----PPNDR 311
             +    ALL PS+ EC  L+I++Q +A++YLE          V RS   S      P +R
Sbjct: 265  TEDSTLALLAPSLFECQQLEIFSQNQAMKYLEKTIMRIQNPIVSRSQMQSRFQVRTPRNR 324

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            E    + L    L NVP         C+      R M++A       DD+DY GNKR++L
Sbjct: 325  EQEVHNWLVSTLLVNVPY--------CY----KRRGMIKA-------DDRDYYGNKRIQL 365

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF-IVRDSITVGLERTLSTG 430
            +G L+SLLFE+ FK    E+++T+   L K +      +S    +++ IT+ +E  + TG
Sbjct: 366  AGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQVVDVISSMKSLQNKITLAMEAAIQTG 425

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTL--GHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            N+++KRFKM RKG+T++L R+SFI  +  G MTR+   FEK+ KV+GPRALQ SQWGMLC
Sbjct: 426  NWNLKRFKMDRKGITEILNRMSFISIILVGTMTRIKGHFEKTMKVTGPRALQGSQWGMLC 485

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P DTPEG  CGLVKN+AL++HVTT E++ P+  L   LGVE+   LSG +LH  N +LV 
Sbjct: 486  PSDTPEGAQCGLVKNMALLSHVTTFEDDKPIHRLLINLGVEETSTLSGYDLHGAN-YLVF 544

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG ++G  R PK     ++ +RRAG++ EFVSV+V+E+ R VY+ASDGGR+ RP +I +
Sbjct: 545  LNGALVGATRNPKSLTRTVQLIRRAGRLPEFVSVYVSEEHRAVYLASDGGRLTRPCIIVE 604

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G  ++ + H+  LL+G   F DF++ GLIEYLDVNEEN+ALIA+YE D T   TH+EIE
Sbjct: 605  NGRPKVTQKHINALLEGRVKFPDFVKNGLIEYLDVNEENSALIAVYERDITKKHTHLEIE 664

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            PF +LGV AGLIPYP HNQSPRNTYQCAMGKQAMG IA NQ  R+DS LY LVYPQRPL+
Sbjct: 665  PFALLGVCAGLIPYPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLV 724

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TRTIEL+G+++L AGQNATVAVMSYSGYDIEDA+V+NK+S+DRG+GRC+V +      Q
Sbjct: 725  KTRTIELIGFEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQ 784

Query: 789  K---YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
            +      +  +RI  P       E+++           LD DG+ APGE +K     + K
Sbjct: 785  RRGTLVETIEERIDGPALDAKSGEKIRADE-------CLDMDGIVAPGERVKDRAPTMAK 837

Query: 846  ESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
              P+                                  +RV +  D    + +K   R T
Sbjct: 838  SQPIHIG------------------------------TERVMISEDATWRM-VKLSYRQT 866

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            RRPELGDKFSSRHGQKGV G IV QE+ PF+E G+CPD+IMNPHG+PSRMTVGK++E +G
Sbjct: 867  RRPELGDKFSSRHGQKGVTGLIVPQENMPFNEIGMCPDVIMNPHGYPSRMTVGKLMECIG 926

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
             KAG   G+FHYG+AFG      +T E +++T++ +GF+Y GKD++ SG TG PL+AYIF
Sbjct: 927  SKAGALSGKFHYGTAFG-----GNTTEEMAQTMLDYGFNYYGKDLLMSGETGEPLEAYIF 981

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            MGPIYYQKL+HMV+DKMHAR +G    LTRQP EGRA++GGLR+GEMERD L+AYGAS L
Sbjct: 982  MGPIYYQKLRHMVMDKMHARATGKVHNLTRQPLEGRAKDGGLRLGEMERDALLAYGASNL 1041

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ER   SSD + V++C  CGL GY      +G C  C+ G++++S+ +PYACKLL+QEL
Sbjct: 1042 LNERFFYSSDKYSVEICGNCGLHGY------SGWCRVCRTGEHMASINMPYACKLLLQEL 1095

Query: 1146 QSMNIVPRLKL 1156
             SMNI+PR++L
Sbjct: 1096 FSMNIMPRIQL 1106


>gi|302412759|ref|XP_003004212.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
            VaMs.102]
 gi|261356788|gb|EEY19216.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1105

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1166 (49%), Positives = 755/1166 (64%), Gaps = 100/1166 (8%)

Query: 13   EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
            E   + +KL  P+ +  DKFQLLP FLKV+GLVKQH+DS+N+FV+  I+ IVRAN  I S
Sbjct: 13   EPFYNGKKLTDPISTQEDKFQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRS 72

Query: 73   GIDPSIFLRFKDVRIGQPS---MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             ++ S +L F D+R+  PS           ++ P  CRL DMTY API V+I Y++    
Sbjct: 73   DVNSSFWLEFTDIRVESPSRLDFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYIR---- 128

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +K+ + + +V +GR+P+ML+S +C L G    E+A + ECPLDPGGYFII GTEKV+LIQ
Sbjct: 129  DKSKIVRRNVPLGRLPVMLKSAKCRLNGASNKEMALMNECPLDPGGYFIINGTEKVILIQ 188

Query: 190  EQLSKNRVIIDTDKKGNI-NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVM 248
            EQLSKNRVI++ D+K NI  ASVTSST   K+KT I ++K ++ L+ N  V+  PI++V+
Sbjct: 189  EQLSKNRVIVEADEKNNIITASVTSSTHERKTKTNITLKKDRISLVHNVLVEPAPIVIVL 248

Query: 249  KAMGMESDQEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
            KA+G  SD E++Q+V G D RY      + +E     +YTQ++ALE++  +VK    G  
Sbjct: 249  KALGGLSDLEIMQLVAGDDGRYQDEFTVNFDEATKQGVYTQQQALEWIGSRVKMGGRGRF 308

Query: 308  PNDREGRAFSI------LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
              + + R  +I      L ++ +A++PV   +F PK  YVA M RR++ A  N   +DD+
Sbjct: 309  QPNSQARKNNIEEGMDALSNLIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDR 368

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSI 419
            D+VGNKRLEL+GQL+SLLFEDLFK    +V+ ++D +L K +R+   D    I    ++I
Sbjct: 369  DFVGNKRLELAGQLLSLLFEDLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMISNHANNI 428

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
              G+ R + TGN+ VKRF M+R G+T VL+RLS+I  LG MTR+S QFEK+RKVSGPRAL
Sbjct: 429  GQGINRAIQTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRAL 488

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL--GVEDLELLSGE 537
            QPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P+    + +   VE +   SG 
Sbjct: 489  QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEEPVKRWVFTVDDNVEPIRNFSGS 548

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
            E+H   S+++  NG      + PK F +  R +RR G I  FV V +N     V+IA+D 
Sbjct: 549  EMHREGSYIIHINGTPFALTKFPKRFTNRFRTMRRRGWISPFVGVHINNHFNAVHIATDE 608

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR+CRP +I   G  ++K  H+K L  G  +FDDFL  G++EYLDVNEEN+ L+ALYE D
Sbjct: 609  GRICRPYIIVKNGKPKLKAEHLKLLQLGKATFDDFLTNGVVEYLDVNEENDTLVALYETD 668

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
                TTH+EIEPFTILG +AGLIP+PHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LL
Sbjct: 669  VNQSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLL 728

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV-----MNKSSLDR 772
            Y LVYPQRP++ ++TI+L+ YDKL AGQNATV VMSYSGYDIEDA++        S    
Sbjct: 729  YTLVYPQRPMVISKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALLWILMAWPWSVARS 788

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G G  + VKK T ++       +DR       GP   R   + +                
Sbjct: 789  GLGEAM-VKKETPLDTGSTGIGNDR-------GPSEFRDSSISYR--------------- 825

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
                 P+  YI+K         +M    + D+                 +V +V     +
Sbjct: 826  ----IPDPAYIDK---------VMISQSEKDN-----------------MVIKVQTRQTR 855

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
              +L  KF              SSRHGQKGV G IV+QED PFS++G+ PD+IMNPHGFP
Sbjct: 856  RPELGDKF--------------SSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFP 901

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMTVGK++E L GKA V  GR  YG  FG+ +  +  ++ +SE LV HGFS+ GKD   
Sbjct: 902  SRMTVGKLLECLTGKASVLDGRPDYG--FGD-AFRSHPLKQMSEALVDHGFSWEGKDYFT 958

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            SGITG PL+AYIF GPIYYQ+LKHMV DKMH+R  GPR +LTRQPTEGR+R GGLR+GEM
Sbjct: 959  SGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEM 1018

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERDCLIAYGAS L+ ERLM+SSD  E+ +C+ CGL GY       G C TC++   ++ M
Sbjct: 1019 ERDCLIAYGASQLLLERLMISSDGTEIDICQQCGLFGY------KGYCHTCRSTKEVTKM 1072

Query: 1133 KLPYACKLLIQELQSMNIVPRLKLAE 1158
             +PYA KLL+QEL SMN+  RL++ +
Sbjct: 1073 TMPYAAKLLVQELISMNVGVRLQMED 1098


>gi|389585547|dbj|GAB68277.1| DNA-directed RNA polymerase III subunit [Plasmodium cynomolgi strain
            B]
          Length = 1300

 Score = 1083 bits (2801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1163 (47%), Positives = 761/1163 (65%), Gaps = 120/1163 (10%)

Query: 88   GQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            G+PS+  + +   L P +CR  D+TY+API V++EYV+GS+     + KN+V IGR+P+M
Sbjct: 167  GRPSVEENMIETSLTPQICRQRDLTYSAPIYVDVEYVKGSNI----IRKNNVEIGRLPVM 222

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            LRS  C+L+ K E EL +LGECP DPGGYFI+KGTE+VLL+QEQLSKNR+I++ D K NI
Sbjct: 223  LRSDICILHNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNI 282

Query: 208  NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP 267
             A++TS+T   KS+  I  +  K+YL  N F++ I + ++++AMG ESDQE+ QM+G   
Sbjct: 283  CATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGSHR 342

Query: 268  RYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGS-----PPNDRE--GRA 315
             Y   +L S+ E  + +I T   AL Y+  K++     +  F S       N+++     
Sbjct: 343  NYLNGILLSLYELYSENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEEG 402

Query: 316  FSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
               L  V L+++   N  +FR K   + +M+RR++++  NK+ +DDKDY GNKRLEL+GQ
Sbjct: 403  LDFLSRVLLSHIQQKNKYDFRNKARCICLMIRRVLDSANNKNELDDKDYYGNKRLELAGQ 462

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRF--------------DLSQFIVRDSIT 420
            L+SLLFEDL+K     ++K +D  LSK  +S+                D+ + + +D IT
Sbjct: 463  LISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYSGNINETYPDVFRSLPKDIIT 522

Query: 421  VGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQ 480
             G++  +STGN+++KRFKM + G++QVL+RLSFI  +G MTR++ QFEK RKVSGPRALQ
Sbjct: 523  RGMQAAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQ 582

Query: 481  PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP-LISLCYCLGVEDLELLSGEEL 539
            PSQWG+LCPCDTPEGE+CGLVKNLALMTHVT D E    LI + Y LGVED + L+GEE+
Sbjct: 583  PSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNEHLIEILYTLGVEDSDSLTGEEM 642

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
            +    F VIFNG++LG H++P+ F   +R LRR GKIG+FVS++ N     +YI++DGGR
Sbjct: 643  YKEGIFFVIFNGILLGVHKKPRTFMRRIRCLRRYGKIGQFVSIYDNFLHNAIYISTDGGR 702

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
            +CRPL+I + G S++ + H+  L +G  +F D L+  +IE++DVNE+NN LIAL E D +
Sbjct: 703  LCRPLIIVENGKSKLSQEHIVSLENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESDIS 762

Query: 660  PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
             +TTH+EI+P TILGV+AGLIPYP+HNQSPRNTYQCAMGKQA+G I +NQ  R D+LLYL
Sbjct: 763  VNTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCDTLLYL 822

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            LVYPQ+PL+ ++TIE + ++KL AGQNA VAVMS+ GYDIEDAIVMNKSS+DRGFGRC+ 
Sbjct: 823  LVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMS 882

Query: 780  VKKYTAINQKYANSTSDRIL-----------RPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            ++K+    +KY N ++D +L           R ++     +  Q             +D 
Sbjct: 883  LRKHAVELKKYFNGSNDLVLPSPLAISKLQQRQEKERQEKQERQRQEKQRQ----AQEDQ 938

Query: 829  LAAPGEIIKPN--------------------------------------------DVYIN 844
            LAA G+ IK                                               VYIN
Sbjct: 939  LAATGQYIKEEGDHVENGTDTNGDEPKRFQNKEIKKYHALDVDGVVSIGYLLKEGQVYIN 998

Query: 845  KESPLETRGSI-------MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
            K SP   +  +       ++     + +Y+S   +Y         +D++    +  G   
Sbjct: 999  KYSPRNVKDHVKDISKIDLNDLKSNEVKYKSVYPSY---------IDKIIFTENAEGLKI 1049

Query: 898  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 957
             K ++R TR PELGDKFSSRHGQKGV G +V QED PF+E GICPDLIMNPHGFPSRMTV
Sbjct: 1050 YKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTV 1109

Query: 958  GKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            GK++EL+  K+ V  G   YGS F G P       E ++  L K+GF+ + K+++YSG+T
Sbjct: 1110 GKLLELVASKSAVLDGELKYGSIFSGTP------FEEMASILFKYGFNCSSKELLYSGLT 1163

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G PL+ YIFMGPIYYQKLKHMV DK+HAR  GPR +LTRQPTEGR++ GGLR+GEMERDC
Sbjct: 1164 GEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDC 1223

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            LIAYG S L+ ERLM+SSD  +V +C  CG++GY  +      C+ C+  D  + +K+PY
Sbjct: 1224 LIAYGVSNLLLERLMLSSDVCDVYICEDCGMMGYDTY------CTFCQKCDKNALVKMPY 1277

Query: 1137 ACKLLIQELQSMNIVPRLKLAEA 1159
            ACKLL QELQ+MN+ P++ + E 
Sbjct: 1278 ACKLLFQELQTMNVFPKIVVKET 1300


>gi|193599220|ref|XP_001950634.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
            [Acyrthosiphon pisum]
          Length = 1112

 Score = 1080 bits (2793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1141 (48%), Positives = 764/1141 (66%), Gaps = 40/1141 (3%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKD 84
            V+ + DK  L+ E+L+ RGL   H++SFN F+++ ++KI++ N  + S  DP+ +L FK+
Sbjct: 2    VEVLRDKEFLVKEYLETRGLYSHHINSFNAFIDSDLKKIIQQNHAVRSDADPNFYLHFKN 61

Query: 85   VRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
            V +G P +  DG  V+  + P  CRL D+TY API V+IEYV+          +   +IG
Sbjct: 62   VTVGHPQVD-DGFNVTRNVTPQECRLRDLTYCAPIYVDIEYVKSG----MKYLRKGFIIG 116

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            R+PIMLRS RC LY K +AELA++ EC  D GGYFI+KGTEKV+L+QEQ +KN+++++ D
Sbjct: 117  RLPIMLRSNRCCLYQKSDAELAKMKECIYDSGGYFIVKGTEKVILMQEQPAKNKILVEKD 176

Query: 203  KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
              G     V SST   KSKT I  +K  +Y+  N   + IP ++ MKA+G+ SDQ ++QM
Sbjct: 177  SNGVPTVQVMSSTVDKKSKTNIIFKKNLIYVCHNALEENIPFVIFMKALGVCSDQLILQM 236

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD- 321
            VG +      + P   E + L+IYTQ++AL ++  ++K+  F S   D + R  + + D 
Sbjct: 237  VGTEFAIMNQMYPCFLEGSKLNIYTQKQALRFIGDRIKKMGFSS--EDYDSRVITEVHDF 294

Query: 322  ---VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
               V LA++PV N N+  K  Y ++M+RR++ ++ N D  D KDY GNK L+L G  +SL
Sbjct: 295  LSTVILAHIPVTNTNYHMKAIYTSIMVRRLIFSLSNPDLFDSKDYYGNKCLDLPGSFLSL 354

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFK 438
            LF+D FK    E++   D  + K  +++ FD+ ++I  D+IT  L   + TGN+ +KRF+
Sbjct: 355  LFDDTFKRFTFELKSVADKNIPK-VKATPFDIIKYIRTDTITNALVFAIQTGNWSIKRFR 413

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            M R G+TQVL RLS++  +G MTRV+ QFEKSRKVSGPR+LQPSQ+GMLCP DTPEGEAC
Sbjct: 414  MERHGVTQVLTRLSYLSAIGMMTRVNSQFEKSRKVSGPRSLQPSQFGMLCPSDTPEGEAC 473

Query: 499  GLVKNLALMTHVTTD-EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            GL+KN++L+ HVTT+ E++  ++ L   LGVE + L S ++LH    +L+IFNG I+G  
Sbjct: 474  GLIKNISLLAHVTTESEDDDAVLQLALNLGVEPVGLYSVDDLHEDYMYLIIFNGNIIGST 533

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
             +   F D  R+ RR G   +F+S++++E+ +C+YI S  GR+CRP ++ + G   +   
Sbjct: 534  NKCIDFVDKFRRCRRKGIFSKFISIYISERHKCIYINSGDGRLCRPYLVVENGQPLLTNA 593

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            H+ +L  G  +F DF+ + LIE++DV+EENN LIA  E    P+TTH+E+ PF+ILG+ A
Sbjct: 594  HIDDLKRGYCTFQDFIDQSLIEFIDVDEENNCLIAYNEEKIVPETTHMEMAPFSILGICA 653

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+PHHNQSPRNTYQCAMGKQA+G IA N   R+D+L Y L Y   P++ ++ + ++ 
Sbjct: 654  SVIPFPHHNQSPRNTYQCAMGKQAIGTIALNYQHRIDTLQYNLWYTHIPMVHSKAVPMIN 713

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            YDKL AGQNAT+AVMSYSGYDIEDAI++NK+S+DRGFGR    +      + Y N   D 
Sbjct: 714  YDKLPAGQNATIAVMSYSGYDIEDAIILNKASVDRGFGRGGTFRNSKCFLRHYPNQMMDS 773

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
            I  P      A +  +  H       L++DG+AA G+ +    V INK +P     +I  
Sbjct: 774  IQGP--IIDNATKKPIYKHR-----ALENDGIAAIGQPVFDKQVTINKATP----KTITV 822

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
                 D  ++     YKG D     VD+V + S+ +  L IK   R  RRPE+GDKFSSR
Sbjct: 823  EDVGGDRGFKETPLYYKGYDPS--YVDKVMITSNSDCFL-IKENFRQPRRPEIGDKFSSR 879

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G IV QED PF+E GICPDLIMNPHGFPSRMTVGK+IELL GKAGV  G+F  
Sbjct: 880  HGQKGVVGLIVDQEDMPFNEVGICPDLIMNPHGFPSRMTVGKLIELLAGKAGVLEGKFQD 939

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            GSAFG       TV  IS  L KH ++Y GKD++Y GI G P++AYI+ GP++YQ+LKHM
Sbjct: 940  GSAFG-----GATVTDISNELQKHNYNYLGKDVLYCGIDGRPMEAYIYSGPVFYQRLKHM 994

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+HAR  GPRV+LTRQPTEGR+++GGLR+GEMERDCLIAYGASMLI ERLM+SSD  
Sbjct: 995  VADKIHARSRGPRVLLTRQPTEGRSKDGGLRMGEMERDCLIAYGASMLIIERLMLSSDVV 1054

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            E+ VC++CGL  Y      +G C  C+  +++  +K+PYACKLL QELQ+M+IVP++ L 
Sbjct: 1055 EMDVCKLCGLFSY------SGWCHMCQKSNSVCRIKMPYACKLLFQELQAMSIVPKISLK 1108

Query: 1158 E 1158
            +
Sbjct: 1109 K 1109


>gi|391325293|ref|XP_003737173.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Metaseiulus occidentalis]
          Length = 1162

 Score = 1072 bits (2771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1131 (48%), Positives = 750/1131 (66%), Gaps = 36/1131 (3%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMT 93
            L+ EFLK +GLV  H+ SF+YFV T +R+I+ AN  + S  DP+ ++ + D+RIG PS+ 
Sbjct: 39   LVAEFLKTKGLVLHHIASFDYFVETEMREILEANAIVYSEADPNWYMEYTDIRIGTPSIV 98

Query: 94   VD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCR 152
               G+     P+ CRL DMTY API V+I Y +G+      + +N++ IGR+PIML+S  
Sbjct: 99   EGPGMIAATTPYQCRLRDMTYFAPIYVDIAYKRGNEL----VIRNELEIGRMPIMLKSKG 154

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVT 212
            CVL+ K   EL +L ECP D GGYFI+KG E+V+L+ EQL+ NR++ID D KG I+  VT
Sbjct: 155  CVLHSKTPWELTKLRECPNDHGGYFIVKGVERVVLMAEQLANNRILIDEDSKGVISCQVT 214

Query: 213  SSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL 272
            SST   KS+T +  + GK Y+  N FV  IP++V+ +AMG+++D  + QM+G +      
Sbjct: 215  SSTHERKSRTNVIEKNGKFYVKHNSFVDDIPVVVMFRAMGVQNDLRIHQMIGTEENIQVA 274

Query: 273  LLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP-NDREGRAFSILRDVFLANVPVH- 330
             + S+ EC  L ++TQE+AL +L  K+K   FG     D   +A+  +    + ++P   
Sbjct: 275  FVGSMVECHKLHVFTQEQALRFLAAKMKSRVFGPQKVEDPLDKAWEAVLSSVINHIPAQP 334

Query: 331  -NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMIS 389
               N R +  Y+ +M+RR+++A  ++  +DD+DY GNKR+EL G ++SLLFEDL K + S
Sbjct: 335  PEYNMRLRAHYLGLMVRRIIQAKYDRGFIDDRDYYGNKRVELPGSMISLLFEDLLKRVNS 394

Query: 390  EVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLA 449
            E++   D  +    R ++FD+ +F+   +IT GL   +STGN+ ++RF MH  G+TQVL+
Sbjct: 395  ELKTIADKQIPM-MRVTQFDIVKFMKPSTITTGLINAISTGNWIIRRFNMHTIGVTQVLS 453

Query: 450  RLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTH 509
            RL++I  LG MTRV+  FEKSRKVSGPR+LQPSQ+GMLCP DTPEGEACGLVKN+AL+ H
Sbjct: 454  RLNYISCLGMMTRVNSHFEKSRKVSGPRSLQPSQFGMLCPSDTPEGEACGLVKNMALLAH 513

Query: 510  VTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG---KHRRPKCFADV 566
            +T +     L      LGV+D+ LL G E  + + + V  NG+I G    HRR   F + 
Sbjct: 514  ITINSS-ADLTDFFISLGVQDVRLLCGAEFSHSHIYHVFHNGVIKGVIEDHRR---FIEE 569

Query: 567  MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV 626
            +R+ RR G +  ++SV+ N   RCVYI +DGGR CRP +I +    R+   H+++L   +
Sbjct: 570  VRQFRRKGFLSPYLSVYPNHIHRCVYIVTDGGRFCRPFIIVENERPRVTSEHLEDLNSHI 629

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
             +F DFL  GL+E+LDVNEEN+ALIA+YE D T  TTH+EI PFTIL   AG+IP+PHHN
Sbjct: 630  LNFQDFLDIGLVEFLDVNEENDALIAVYEKDITDKTTHLEIAPFTILSACAGIIPFPHHN 689

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQCAMGKQAMG I +NQ  R+D+L Y +V+PQRPL++T+ I+L+ +D++ AGQN
Sbjct: 690  QSPRNTYQCAMGKQAMGVIGYNQHMRIDTLQYNMVFPQRPLVSTKAIKLINFDRMPAGQN 749

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
              +AVMSYSGYDIEDAIV+NK+S++RGFG C VV       ++Y N   DRIL P     
Sbjct: 750  VCLAVMSYSGYDIEDAIVLNKNSMERGFGECRVVTSQKCQLRRYPNMACDRILGP--LVD 807

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
             + R  +  H       LD DG+  PGE +    V IN+  P  T  + + P GQ    Y
Sbjct: 808  ASTRKPIFDHQ-----CLDYDGIVMPGETVVKGQVLINRHIPAGT--ASLDP-GQP-IEY 858

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
            +     Y+G       +DRV +  + +G+   K ++  TR+PE+GDKFSSRHGQKGV G 
Sbjct: 859  KEMPLRYQGT--VPAQIDRVMVSVNADGETLFKVVMSQTRKPEIGDKFSSRHGQKGVVGL 916

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS- 985
            IV QED PF ++G+ PD+IMNPHGFPSRMTVGKMIE+L GKA    G     +AF   S 
Sbjct: 917  IVGQEDMPFDDQGVVPDIIMNPHGFPSRMTVGKMIEILAGKAAALSGEVQDATAFENKSE 976

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
            G   T   + E L ++GF + GKD++  G+ G P+QAYI+ G  YYQ+LKHMV DKMHAR
Sbjct: 977  GEPVTCSEMGELLQRNGFHFQGKDILTCGVNGQPMQAYIYRGTCYYQRLKHMVQDKMHAR 1036

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GPR +LTRQPTEGR+R+GGLR+GEMERDCLI +GA+ML+ ERLM SSD  EV +C VC
Sbjct: 1037 ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGHGAAMLLRERLMFSSDATEVDICNVC 1096

Query: 1106 GLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            GL+G+         C  CK+   + ++K+PYA KLL QEL +MNI PRLKL
Sbjct: 1097 GLIGFLKW------CQRCKSSQAMCTVKMPYAFKLLCQELCAMNIAPRLKL 1141


>gi|406699010|gb|EKD02230.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            8904]
          Length = 941

 Score = 1070 bits (2766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/976 (54%), Positives = 690/976 (70%), Gaps = 56/976 (5%)

Query: 201  TDKKGNIN-ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            TD K ++  A VTSST     KT +  +  ++YL  + F + IPI++ +KAMG+ SD+E+
Sbjct: 2    TDPKKDVTTAEVTSSTHDRVVKTYVTTKASRLYLRHSSFKEPIPIVIALKAMGVTSDKEI 61

Query: 260  VQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---- 314
            +Q+V G D +Y      S+EE A L +YT+ +ALE++  +V      SP  ++E R    
Sbjct: 62   LQLVCGPDEKYQEAFGMSLEEAARLRVYTRREALEWIGARV------SPTQEKEDRSLGH 115

Query: 315  -------AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
                   A   L  + L +VPV + NFRPK  Y+A M RR++ AML+++ +DD+DYVGNK
Sbjct: 116  KLTPTDMAMQALAAMVLGHVPVRDMNFRPKAIYLATMSRRVLAAMLDENMVDDRDYVGNK 175

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR---DSITVGLE 424
            RLEL+GQL+SLLFED FKT  S+++K +D IL K +R+  FD S  +     D IT    
Sbjct: 176  RLELAGQLLSLLFEDSFKTFNSDLKKRMDKILEKKTRAGPFDASTLVRTGGGDIITSAFV 235

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            R++STGN+ +KRF + R G+T VL+RLSFI  LG MTR++ QFEK+RKVSGPRALQPSQW
Sbjct: 236  RSISTGNWSLKRFHVERAGVTHVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQW 295

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TTD  E PLI L + LG ED+ L +G EL+    
Sbjct: 296  GMLCPSDTPEGEACGLVKNLALMTHITTDVPEDPLIKLAFVLGAEDISLATGNELYRDGV 355

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
             LV  NG ++G    P+ F    RKLRR+G+  EFVS+++N  QR +YIASDGGR+CRPL
Sbjct: 356  HLVQVNGNLIGVTALPRKFVRTFRKLRRSGRTSEFVSIYINHHQRVIYIASDGGRICRPL 415

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I + G  R+   HM+ L  G  +FD FLR GL+EYLDVNEEN++ IA YE + T DTTH
Sbjct: 416  IIVENGRPRVTSEHMQLLKAGKVTFDHFLRSGLVEYLDVNEENDSFIACYESEITEDTTH 475

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+ YPQ
Sbjct: 476  LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQ 535

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ T+TIELVGYD+L AGQNATVAVMSYSGYDIEDA+++N++S DRGFGRC V+KK T
Sbjct: 536  QPMVKTKTIELVGYDRLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQT 595

Query: 785  AINQKYANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
               + + N TS+R+  L PD      +R +   HS      LD DGL APG ++   DV 
Sbjct: 596  IPIRSFPNGTSERLAMLPPD------QRPET--HS-----WLDQDGLVAPGSVVSQGDVL 642

Query: 843  INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
              +E+P++TRG    PT      +++    +K P  E   +D+V +   ++G+  IK L 
Sbjct: 643  AARETPMDTRGP--GPT----VGFKATPVAHKLP--EPTNIDKVMVTDTEDGNQLIKILT 694

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TRRPELGDKFSSRHGQKGVCG IV Q+D PF+++GICPD+IMNPHGFPSRMTVGKMIE
Sbjct: 695  RQTRRPELGDKFSSRHGQKGVCGLIVPQQDMPFNDQGICPDIIMNPHGFPSRMTVGKMIE 754

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            LL GKAG+  G+  YG+AFG        V  +S+ L+  GFSY GKD + SGITG  L+ 
Sbjct: 755  LLSGKAGLMAGKLQYGTAFG-----GSKVVDMSQILIDAGFSYAGKDTLTSGITGESLET 809

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y++ GPIYYQKLKHMV+DKMHAR +GPR  LTRQPTEGR+++GGLR+GEMERDCLI YGA
Sbjct: 810  YVYFGPIYYQKLKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGA 869

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            + L+ ERLM+SSD F+ QVC  CG+L Y      +G C  C++   +  + +PYA KLLI
Sbjct: 870  TQLLLERLMISSDAFDAQVCETCGMLAY------SGWCKGCQSSKAVVKITMPYAAKLLI 923

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL  MNI+P+L + +
Sbjct: 924  QELIGMNILPKLVMED 939


>gi|339233902|ref|XP_003382068.1| DNA-directed RNA polymerase III subunit RPC2 [Trichinella spiralis]
 gi|316978998|gb|EFV61866.1| DNA-directed RNA polymerase III subunit RPC2 [Trichinella spiralis]
          Length = 1302

 Score = 1070 bits (2766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1151 (47%), Positives = 764/1151 (66%), Gaps = 62/1151 (5%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
            + L  PV S+  K+ ++P +L+ +GL+ QH+DSF+YF+N+ I++IV+AN+ +    DPS 
Sbjct: 166  EHLGLPVDSLEQKWAIIPHYLRTKGLINQHIDSFDYFINSEIKEIVKANNMVRCNADPSF 225

Query: 79   FLRFKDVRIGQP-SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            ++++ D+R+G P +   D +   + PH CRL D+TYAAPI V+IEY +G    K  + + 
Sbjct: 226  YIKYIDIRVGLPKAEEADCLQTSVTPHECRLRDITYAAPIFVDIEYTRG----KEKVLRK 281

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            +  IGR+PIMLRS RCVL GK+E EL ++ ECPLDPGGYFII+GTE+V+LIQEQ+SKNR+
Sbjct: 282  NFQIGRMPIMLRSSRCVLKGKNEKELIKMNECPLDPGGYFIIRGTERVVLIQEQMSKNRM 341

Query: 198  IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            ++  DK   I+  V + T   + KT +  +K   ++  N+  + I + ++ +AMG+ S++
Sbjct: 342  LVAMDKTDEISCGVLTMTHISRGKTYVVYKKDIFFMRNNRLTEDISMAIIFRAMGILSER 401

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEK---ALEYLEGKVKRSTFGSPPND---R 311
            E++ +V  +     + L ++++    +I+TQ+    AL ++  ++K +TF    N    +
Sbjct: 402  EMLHLVSGEQDSCLVFLNTLQDLHKREIFTQKDVIVALIFVGNRIKGNTFFIAKNSTVSK 461

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            +  A S L DV  A+VP    N + K  Y+ +M++R+++ ML K  +DD DY GNKRLEL
Sbjct: 462  DELALSFLTDVICAHVPSSAGNMKLKAIYMGLMIQRIIQVMLGKATVDDPDYYGNKRLEL 521

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L++LLFEDLFK    E+    D  + +  R++ FD  + I +D IT GL   ++TGN
Sbjct: 522  AGSLLALLFEDLFKRFNQEISLLTDRTIQR-LRTALFDFVKHIPKDLITNGLLNAIATGN 580

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + ++R++M R G+TQ+L+R+S+I  LG MTR++ QFE +RK+ GPR+LQPSQWGMLCP D
Sbjct: 581  WVIRRYRMDRHGVTQILSRMSYIAMLGMMTRINSQFEHTRKMGGPRSLQPSQWGMLCPAD 640

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE CGL+K+LAL++H+TTD EE P+      LGVED+  LS E L +P++  V  NG
Sbjct: 641  TPEGEPCGLIKSLALLSHITTDSEELPVKKAFCNLGVEDVNYLSTEVLLHPSTSFVFLNG 700

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
            ++ G  R      + +R +RR G + +FV++F+NE+QR +Y++ DGGR+CRP +I + G 
Sbjct: 701  VLFGITRDVVQLYNSLRYMRRHGFLNKFVNLFLNEEQRTLYVSCDGGRICRPYIIVENGK 760

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
            S ++ HH++EL  G R+ +DF ++GLIEYLDV+EE +ALIA+Y+ + T  TTH+EIEPFT
Sbjct: 761  SLLQHHHLRELACGKRNLEDFFKDGLIEYLDVSEEESALIAVYDSEITEKTTHLEIEPFT 820

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            + GV AGLIPYP+HNQSPRNTYQCAMGKQAMG IA+NQ  RMDSLLY LVYPQRPL+ T+
Sbjct: 821  LFGVCAGLIPYPNHNQSPRNTYQCAMGKQAMGIIAYNQSIRMDSLLYGLVYPQRPLVKTK 880

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            TIEL+ ++ L AGQNA VAVMSYS                 GFGRC V +      + Y+
Sbjct: 881  TIELINFECLPAGQNAIVAVMSYS-----------------GFGRCHVYRSNKCFVKSYS 923

Query: 792  NSTSDRILRP--DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            N  SDRIL P  D T        V  H     + LD +G+  PG ++K   V +NK +P 
Sbjct: 924  NMDSDRILGPLVDVTTGKP----VFRH-----MALDAEGIVKPGNVVKIGQVLVNKVAPR 974

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
                +   PT  +++ ++     + G        +RV L S+ +    IK L+R TRRPE
Sbjct: 975  SALLNEEEPTVVSETDFKEEPLVWTG--AAEAYAERVLLTSNLDNQCLIKVLLRQTRRPE 1032

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            LGDKFSSRHGQKGV G IVQQED PFS  GI PDLIMNPHG+PSRMTVGK++EL+ GK G
Sbjct: 1033 LGDKFSSRHGQKGVVGLIVQQEDMPFSSEGIVPDLIMNPHGYPSRMTVGKLLELINGKGG 1092

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
               G   YG+AF       D +E I++ L++HGF+Y GKD++ SG+    +Q       +
Sbjct: 1093 TFTGTPRYGTAFS-----GDKIEEIAKDLMQHGFNYLGKDVLISGVFRL-IQMQFGCDEV 1146

Query: 1030 Y-YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            Y  QKLKHMVLDK+HARG GP   LTRQPTEGR+R+GGLR+GEMERDC IAYGAS ++ E
Sbjct: 1147 YLLQKLKHMVLDKIHARGKGPMENLTRQPTEGRSRDGGLRLGEMERDCFIAYGASAILVE 1206

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RLMVSSD FE            YN      +C  CK+   ++++ +PYACKLL QELQ+M
Sbjct: 1207 RLMVSSDAFE-------ATFQLYN------MCQNCKSSQALATVCMPYACKLLFQELQAM 1253

Query: 1149 NIVPRLKLAEA 1159
            N++P++KL + 
Sbjct: 1254 NVMPQMKLRDG 1264


>gi|303391303|ref|XP_003073881.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303303030|gb|ADM12521.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1110

 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/1163 (47%), Positives = 760/1163 (65%), Gaps = 96/1163 (8%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            + +L+  F K +GLV+QH++S++YFV+  I+ +VRAN  + S ID + +L++ D+R+G P
Sbjct: 6    RLELIKLFFKEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVGMP 65

Query: 91   SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRS 150
            S+  + V+  + P  CRL DMTY+A I V+IEYV+     +  + K D+ IG++P+MLRS
Sbjct: 66   SIEENMVNYDVFPIECRLRDMTYSANIYVDIEYVRN----RQIIVKRDICIGKMPVMLRS 121

Query: 151  CRCVLYGKDEA----------ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
             RC L  + +           ++    ECPLD GGYFII+G E+V+LIQEQLSKNR+II+
Sbjct: 122  SRCHLRKEAKGIIESNKTRDRKIRESQECPLDVGGYFIIRGIERVILIQEQLSKNRIIIE 181

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            +  KG + ASVTSST+  KSKT + ++    YL  + F ++IP ++ MKA+G+  D+E+ 
Sbjct: 182  SGPKG-LFASVTSSTDEHKSKTSVTIKDDCYYLKSSMFNEEIPAIIAMKALGLTQDKEIA 240

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
            + +G++  Y  +++PS  EC + +++T+++AL Y+   +K      P ++R     +IL 
Sbjct: 241  ECIGKE--YFEIIVPSFGECISKEVFTKDQALLYMSNYIKLK----PEDNRIEEVLTILS 294

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
            +  L NV     N R K  Y+A+M+RR+V+  LN    DDKD+VGNKR EL+GQL+S+LF
Sbjct: 295  EKVLPNVQTEGCNLRKKGIYIALMIRRLVQTKLNILKEDDKDFVGNKRFELAGQLLSILF 354

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLSTGNFDVKRFK 438
            ED FK    E++K++D ILSK SR+  FD   F+    + IT  L R +STGN+++KRF+
Sbjct: 355  EDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNWNLKRFR 414

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            M R G+T VL+R S+I  LG MT+++  FEK+RKVSGPR+L  S WGMLCP DTPEGE+C
Sbjct: 415  MERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESC 474

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLAL+  +TT+ +  P++ L + LGV D+  +   E+H  + F V  NG I+G   
Sbjct: 475  GLVKNLALLAEITTNSDTRPVLDLMFRLGVVDINSVYTREIHQKDMFSVFLNGDIVGITN 534

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            +     +  R  RR G IG+FVS++    ++ +++ASD GRVCRPLV+ DKG  RI +  
Sbjct: 535  KAGFLIEQFRLNRRKGLIGKFVSIYRVPAEKVIHVASDNGRVCRPLVVIDKG--RINQMI 592

Query: 619  MKELLDGV-------------------------RSFDDFLREGLIEYLDVNEENNALIAL 653
            +   +D                           +SF D L EG +EYLDVNEEN+ L+AL
Sbjct: 593  ISNQVDKYLEALNISEKIEMGSERSFFDCYLKYKSFSDLLEEGFVEYLDVNEENDCLVAL 652

Query: 654  YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
               D   +TTH+EI  F ILG +AGL+P+PHHNQSPRNTYQCAMGKQA+G+I+ N   R 
Sbjct: 653  RPEDIVEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRF 712

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D ++  L Y  RP+++T+ ++L+ Y+++ AGQNA VAVMSYSGYDIEDA+V+NK+S++RG
Sbjct: 713  DPVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSIERG 772

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
              R  V K  T + +K++N  SD +      GP  +             +LDDDGL  PG
Sbjct: 773  LFRVEVYKTITTLLKKHSNGLSDIL------GPNPKES-----------VLDDDGLGKPG 815

Query: 834  EIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
            ++I+   VY+NK SP+E    +   TG+                G+   +D+V L +   
Sbjct: 816  KMIRDGTVYVNKMSPVE---GVYKFTGKVHR-------------GDPAYIDKV-LITKSQ 858

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
              + IK ++R TR PE+GDKFSSRHGQKGV G IV QED PF+++GI PD+IMNPHGFPS
Sbjct: 859  DQILIKTMLRQTRPPEIGDKFSSRHGQKGVVGLIVGQEDMPFNDQGISPDIIMNPHGFPS 918

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGK+IEL+ GKAGV  G+    +AF E     ++VE   E L KHGFSY+GKD   S
Sbjct: 919  RMTVGKIIELISGKAGVLSGQILDSTAFKE-----NSVEQTCELLAKHGFSYSGKDCFTS 973

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            G TG PL AYIF GP++YQ+LKHMV DK+H R  GPR +LTRQPTEGR+++GGL++GEME
Sbjct: 974  GTTGAPLTAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEME 1033

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLI YGAS LI ERLM+SSD FE  VC+ CG+L +       G C  CKN    + +K
Sbjct: 1034 RDCLIGYGASSLIIERLMISSDMFEAYVCKPCGVLAF------KGCCVACKNTKP-AKIK 1086

Query: 1134 LPYACKLLIQELQSMNIVPRLKL 1156
            +PYACKLL QEL SMNI+PRL +
Sbjct: 1087 MPYACKLLFQELISMNILPRLHI 1109


>gi|401827970|ref|XP_003888277.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
 gi|392999549|gb|AFM99296.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
          Length = 1110

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1163 (47%), Positives = 765/1163 (65%), Gaps = 96/1163 (8%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            + +L+  F K +GLV+QH++S++YFV+  I+ +VRAN  + S ID + +L++ D+R+G P
Sbjct: 6    RLELIKLFFKEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVGMP 65

Query: 91   SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRS 150
            S+  + V+  + P  CRL DMTY+A I V+IEYV+     +  + K DV IG++P+MLRS
Sbjct: 66   SVEENMVNYNVFPIECRLRDMTYSANIYVDIEYVRN----RQIIVKRDVCIGKMPVMLRS 121

Query: 151  CRCVLYGKDEAELARLG------------ECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
             RC L  + EA+++  G            ECPLD GGYFII+G E+V+LIQEQLSKNR+I
Sbjct: 122  SRCHL--RKEAKISIEGNRAKDRKIKESQECPLDVGGYFIIRGIERVILIQEQLSKNRII 179

Query: 199  IDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
            I++  KG + ASVTSST+  KSKT + ++    YL  + F ++IP+++VMKA+G+  D+E
Sbjct: 180  IESGPKG-LFASVTSSTDEHKSKTSVTIKDDCYYLKNSMFNEEIPVVIVMKALGLTQDKE 238

Query: 259  VVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSI 318
            + + VG++  Y  +++PS  EC + +++T+E+AL Y+   +K      P ++R     +I
Sbjct: 239  IAECVGKE--YFDIMVPSFGECISKEVFTKEQALLYISNYIKLR----PEDNRIEEVLTI 292

Query: 319  LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            L +  L NV V   N R K  Y+A+M+RR+ +  LN    DDKD+VGNKR EL+GQL+S+
Sbjct: 293  LSEKVLPNVQVEGCNLRKKGIYIALMIRRLTQTRLNILKEDDKDFVGNKRFELAGQLLSI 352

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLSTGNFDVKR 436
            LFED FK    E++K++D ILSK SR+  FD   F+    + IT  L R +STGN+++KR
Sbjct: 353  LFEDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNWNLKR 412

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            F+M R G+T VL+R S+I  LG MT+++  FEK+RKVSGPR+L  S WGMLCP DTPEGE
Sbjct: 413  FRMERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGE 472

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            +CGLVKNLAL+  +TTD +  P++ L + LGV D+  +   E+H    F V  NG I+G 
Sbjct: 473  SCGLVKNLALLAEITTDSDVRPVLDLIFKLGVVDINSVYTREIHQNGMFSVFLNGDIIGI 532

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------- 609
              +   F +  +  RR G +G+FVS++    +R ++IASD GRVCRPL++ DK       
Sbjct: 533  IDKVDFFVEQFKLHRRKGLVGKFVSIYKVMTERVIHIASDNGRVCRPLIVIDKKKINRMI 592

Query: 610  ------------GIS-RIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIAL 653
                         IS R +    K  LD     +SF D L EG IEYLDVNEEN+ L+AL
Sbjct: 593  VSNEIDKCFEVLNISERPEMERGKTFLDCYLKYKSFSDLLEEGFIEYLDVNEENDCLVAL 652

Query: 654  YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
               D   +TTH+EI  F ILG +AGL+P+PHHNQSPRNTYQCAMGKQA+G+I+ N   R 
Sbjct: 653  KPEDMVEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRF 712

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D ++  L Y  RP+++T+ ++L+ Y+++ AGQNA VAVMSYSGYDIEDA+V+NK+S++RG
Sbjct: 713  DPVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSIERG 772

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
              R  V K  T + +K+++  SD +L P+   P                +LD+DGL  PG
Sbjct: 773  LFRVEVYKTTTTLLKKHSSGMSD-VLWPN---PKES-------------VLDEDGLGKPG 815

Query: 834  EIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
             ++K   +Y+NK SP+E    I   TG+                G+   +D+V L +   
Sbjct: 816  RMVKDGTIYVNKMSPVE---GIYKFTGKVHR-------------GDPAYIDKV-LITKSQ 858

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
              + IK ++R TR PE+GDK SSRHGQKGV G IV+QED PF+++GI PD+IMNPHGFPS
Sbjct: 859  DQVLIKTMLRQTRPPEIGDKLSSRHGQKGVVGLIVRQEDMPFNDQGIVPDIIMNPHGFPS 918

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGK+IEL+ GKAG+  G+    +AF E     ++VE     L +HGFSY+GKD   S
Sbjct: 919  RMTVGKIIELISGKAGLMEGKIFDSTAFKE-----NSVEETCNILSRHGFSYSGKDCFTS 973

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            G TG PL AYIF GP++YQ+LKHMV DK+H R  GPR +LTRQPTEGR+++GGL++GEME
Sbjct: 974  GTTGAPLTAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEME 1033

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLI YGAS LI ERLM+SSD FE  VC+ CG+L +       G C  CK+  N + +K
Sbjct: 1034 RDCLIGYGASSLITERLMISSDVFEAYVCKSCGVLAF------KGCCVACKD-KNPTKIK 1086

Query: 1134 LPYACKLLIQELQSMNIVPRLKL 1156
            +PYACKLL QEL SMNI+PRL L
Sbjct: 1087 MPYACKLLFQELMSMNILPRLHL 1109


>gi|399216789|emb|CCF73476.1| unnamed protein product [Babesia microti strain RI]
          Length = 1146

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1189 (46%), Positives = 770/1189 (64%), Gaps = 104/1189 (8%)

Query: 29   VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRFKDVR 86
            +D ++LLP +    GL  Q + SFN+FV +GIR+I+ A  N  I + ID   ++ F D+R
Sbjct: 1    MDNWRLLPPYFLEYGLAMQQIRSFNHFVQSGIREILNAPSNKIIRTEIDTKFYIEFLDIR 60

Query: 87   IGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            IG P+   D V+  L P++CR+ D+TY+API V++EY +GS      + K +  IGR+P+
Sbjct: 61   IGLPNYEEDMVTSSLVPNICRIRDLTYSAPIYVDVEYTRGSDI----IRKQNAEIGRLPV 116

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKV--------------------- 185
            ML+S  C L GKDE EL +LGECP DPGGYFIIKG+EKV                     
Sbjct: 117  MLKSAICSLEGKDELELQKLGECPHDPGGYFIIKGSEKVTFILWTNIYYFFKLMFSKLIQ 176

Query: 186  -------------LLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMY 232
                         ++IQEQLSKNR++++ D K NI A++TS+T   KS+  + ++  K+Y
Sbjct: 177  TFINKSYRYYGFVIVIQEQLSKNRILVERDVKHNICATLTSATAESKSRASVVLKSEKIY 236

Query: 233  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKAL 292
            L  N F   +PI ++  AMG+ES QE+ +++G    Y   +  S+      DI T + AL
Sbjct: 237  LRHNSFTDDLPISIIFMAMGIESTQEIAEIIGAGHSYPRSVYLSLSPLIANDIRTIKDAL 296

Query: 293  EYLEGKVKRST----FGSPPNDREGR--------AFSILRDVFLANVPVHNN---NFRPK 337
             ++  +++       F +P  ++  +        A+ IL  V L +VP+  +   ++  K
Sbjct: 297  LFIGSRIRSRIMARGFFAPVKEKVAKSDTVIIKEAYDILDRVILPHVPMKKSKSRDYSEK 356

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDI 397
               +A+M+RR++        +DDKD+ GNKRLEL+GQLVS+LFEDL+K  I +V+K V+ 
Sbjct: 357  ITCLALMVRRVLNCAYKDAPLDDKDHYGNKRLELAGQLVSILFEDLYKKFIFQVKKQVEQ 416

Query: 398  ILSK--PSRSSRFDLS-----QFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLAR 450
             L +   SRSS  D +     + +  D IT G++ +LSTGN+++KRFKM R G+TQ+L+R
Sbjct: 417  SLERYIQSRSSGSDTTYPDTFRNLPHDIITRGMQSSLSTGNWNIKRFKMERSGVTQILSR 476

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
            L+++ T+G M R++ QFEK RKVSGPRAL PSQWG +CPCDTPEGE+CGLVKNLAL THV
Sbjct: 477  LNYMATIGMMMRINSQFEKGRKVSGPRALSPSQWGFICPCDTPEGESCGLVKNLALATHV 536

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            T DE    L  L Y LG+   + ++  +L +P ++LV  NGL++G H   +   D +RKL
Sbjct: 537  TNDENPQYLERLLYSLGLFPSKYVATRDLFDPRNWLVFLNGLLVGVHSNAELLMDNIRKL 596

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD 630
            RRAGKIGEFVS++ ++    VYI+SDGGRVCRPL+I + G S++    + +++ G    +
Sbjct: 597  RRAGKIGEFVSIYCDDSS--VYISSDGGRVCRPLIIVESGKSKLTNEILDQVIAGKLKLN 654

Query: 631  DFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPR 690
              L+ G++E++DVNEENN LIA    + T  TTH+E++PFTILG+I+GLIPYPHHNQSPR
Sbjct: 655  QLLKGGILEWIDVNEENNLLIATKPNEITCKTTHLELDPFTILGIISGLIPYPHHNQSPR 714

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQC MGKQA+G++ +NQ  R D++L+ LVYPQ+PL+TTRT++L  ++KL AGQNA VA
Sbjct: 715  NTYQCGMGKQAIGSVGYNQFSRCDTILHTLVYPQKPLVTTRTVKLTAFEKLPAGQNAIVA 774

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            VMSY GY+IEDAIV+NK+S++RGFGRCI +K+ +   +KY   +SD           A  
Sbjct: 775  VMSYGGYEIEDAIVINKASVERGFGRCISMKRMSVELKKYHTGSSD---------IAAPT 825

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
             Q+   SN+    ++ DG+   G  +  + + ++K     T+G  ++P      +Y+   
Sbjct: 826  NQLA--SNINYQGIESDGIVRVGHELSNDQIIVSK----ITQGQKITPV-----KYKQNT 874

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             ++         +DRV +    +G    K ++R  R PELGDKFSSRHGQKGV G I  Q
Sbjct: 875  SSH---------LDRVIVTDTTSGCRVYKMMLRKFRSPELGDKFSSRHGQKGVVGLIANQ 925

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PFS  G  PDLIMNPHGFPSRMTVGK++EL+  KA V  G    G+AF +P      
Sbjct: 926  EDLPFSSNGWVPDLIMNPHGFPSRMTVGKLLELVASKATVCTGIELDGTAFADPQ----- 980

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            +ESI + L++HGFS +GK+++YSG TG  ++ YIF GPIYYQKLKHMV DK+HARG GPR
Sbjct: 981  MESIWKILLQHGFSPSGKELLYSGFTGEAIETYIFTGPIYYQKLKHMVQDKIHARGRGPR 1040

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQPTEGR+++GGLR+GEMERDCLI+YG S LI ERLM+SSD   V VC  CGL+GY
Sbjct: 1041 QLLTRQPTEGRSKDGGLRLGEMERDCLISYGTSNLILERLMLSSDVCRVMVCNKCGLIGY 1100

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
             +       C  CK  ++   + +PYACKLL  ELQ+MNI PR+ L  +
Sbjct: 1101 KSD------CLYCKLSNSCVPIHMPYACKLLFHELQTMNIAPRILLTSS 1143


>gi|357514369|ref|XP_003627473.1| DNA-directed RNA polymerase III subunit RPC2 [Medicago truncatula]
 gi|355521495|gb|AET01949.1| DNA-directed RNA polymerase III subunit RPC2 [Medicago truncatula]
          Length = 653

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/668 (77%), Positives = 561/668 (83%), Gaps = 54/668 (8%)

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            +E LSGEELH PNSFLVIFNG+ILGKHRRP+ FA  MRKLRRA  IGEFVSV+VNEKQ C
Sbjct: 1    MEHLSGEELHTPNSFLVIFNGMILGKHRRPQRFATAMRKLRRACLIGEFVSVYVNEKQCC 60

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNAL 650
            VY+ASDGGRVCRPLVIAD GISR+K HHMKEL DGV +F DFLR GLIEYLDVNEENNAL
Sbjct: 61   VYLASDGGRVCRPLVIADNGISRVKAHHMKELKDGVCAFRDFLRNGLIEYLDVNEENNAL 120

Query: 651  IALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ- 709
            IALYE DATP+TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQ 
Sbjct: 121  IALYEKDATPETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQG 180

Query: 710  -------------LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
                         L RMD+LLYLLVYPQRPLLTT++IELVGYDKLGAGQNATVAVMSYSG
Sbjct: 181  KGSNIEYGRKLEELRRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSG 240

Query: 757  YDIEDAIVMNKSSLDRGFGRCIVVKKYT-------------------------AINQKYA 791
            YDIEDAIVMNKSSLDRGFGRCIV+K+Y                          A+ QKY+
Sbjct: 241  YDIEDAIVMNKSSLDRGFGRCIVMKRYAILFGDFTSLVATYFRDCLAHLVRYAAVRQKYS 300

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N T DRI RPDR       MQ          ILDDDG+A+PGEII+P D+YINK+SP ET
Sbjct: 301  NGTEDRIERPDRA---LNNMQ----------ILDDDGIASPGEIIRPTDIYINKKSPTET 347

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
            +  + S T   DS YRS   T+    G   VVD+VALC+DK+ ++CIKFL RHTRRPELG
Sbjct: 348  QNKV-SSTNLPDSAYRSNYSTFNKCHGGE-VVDKVALCNDKDSNMCIKFLTRHTRRPELG 405

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKFSSRHGQKGVCGTIVQQEDFPFSE+GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS
Sbjct: 406  DKFSSRHGQKGVCGTIVQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 465

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
            CG+FHYGSAFGE SGHAD VE+IS+TLVKHGF+Y+GKD IYSGITGCPLQAYIFMGPIYY
Sbjct: 466  CGKFHYGSAFGEESGHADKVETISKTLVKHGFNYSGKDFIYSGITGCPLQAYIFMGPIYY 525

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKLKHMVLDKMHARGSGP+ ++TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM
Sbjct: 526  QKLKHMVLDKMHARGSGPKALITRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 585

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            +SSDP+EVQVCR CGLLGYYNHKLKAG+CS+CKNG  IS+MKLPYACKLLIQELQSMNIV
Sbjct: 586  LSSDPYEVQVCRACGLLGYYNHKLKAGVCSSCKNGKQISTMKLPYACKLLIQELQSMNIV 645

Query: 1152 PRLKLAEA 1159
            PRLKL +A
Sbjct: 646  PRLKLEDA 653


>gi|449328562|gb|AGE94839.1| DNA-directed RNA polymerase III subunit 2 130kDa subunit
            [Encephalitozoon cuniculi]
          Length = 1110

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1163 (46%), Positives = 761/1163 (65%), Gaps = 96/1163 (8%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            + +L+  F   +GLV+QH++S++YFV+  I+ +VRAN  + S ID + +L++ D+R+  P
Sbjct: 6    RLELIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVAMP 65

Query: 91   SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRS 150
            S+  + V+  + P  CRL D+TY+A I V+IEYV+     +  + K DV IG++P+MLRS
Sbjct: 66   SVEENMVNYNVFPIECRLRDITYSANIYVDIEYVRN----RQIIVKRDVCIGKMPVMLRS 121

Query: 151  CRCVLYGKDEA----------ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
             RC L  + +            +    ECPLD GGYFI++G E+V+LIQEQLSKNR+II+
Sbjct: 122  SRCHLRRETKGPMEGRKTKDRRIRESQECPLDVGGYFIVRGIERVVLIQEQLSKNRIIIE 181

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            +  KG + ASVTSST+  KSKT +       YL  + F +++P++++MKA+G+  D+EV 
Sbjct: 182  SGPKG-LFASVTSSTDEHKSKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGLVQDREVA 240

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
            + VG++  Y  ++ PS  EC + +I+T+E+AL Y+   +K      P ++R     ++L 
Sbjct: 241  ECVGKE--YFEIMAPSFGECMSKEIFTREQALLYISSYIKLK----PEDNRIEEVLTVLS 294

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
            +  L NV +   + R K  Y+A+M+RR+ +  LN    DDKD+VGNKR EL+GQL+S+LF
Sbjct: 295  EKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILF 354

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLSTGNFDVKRFK 438
            ED FK    E++K++D ILSK SR+  FD   F+    + IT  L R +STGN+++KRF+
Sbjct: 355  EDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLARAISTGNWNLKRFR 414

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            M R G+T VL+R S+I  LG MT+++  FEK+RKVSGPR+L  S WGMLCP DTPEGE+C
Sbjct: 415  MERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESC 474

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLAL+  +TT+ +  P++   Y LGV D+  +   E+H  + F V  NG I+G   
Sbjct: 475  GLVKNLALLAEITTNSDTKPILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITN 534

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE-- 616
            R     +  +  RR G +G+FVS++    +R ++IASD GRVCRPL+I DK  +RI +  
Sbjct: 535  RADFLVEQFKLHRRKGLVGKFVSIYKVTVERVIHIASDNGRVCRPLIIIDK--NRINQTI 592

Query: 617  --HHMKELLDGV---------------------RSFDDFLREGLIEYLDVNEENNALIAL 653
              + M E L  +                     +SF D L EG IEYLDVNEEN+ L+AL
Sbjct: 593  ISNQMDECLKALNISEKVAIESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEENDCLVAL 652

Query: 654  YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
               D   +TTH+EI  F ILG +AGL+P+PHHNQSPRNTYQCAMGKQA+G+I+ N   R 
Sbjct: 653  KPEDIGEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRF 712

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            DS++  L Y  RP+++T+ ++L+ Y+++ AGQNA VAVMSYSGYDIEDA+V+NK+S++RG
Sbjct: 713  DSVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERG 772

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
              R  V K  T + +K++N  SD +L P+   P                +LD+DGL  PG
Sbjct: 773  LFRVEVYKTTTTLLKKHSNGMSD-VLWPN---PKES-------------VLDEDGLGKPG 815

Query: 834  EIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
            ++++   VY+NK SP+             D  Y+   + ++   G+   +D++ L +   
Sbjct: 816  KMVRDGTVYVNKMSPV-------------DGTYKFTGKVHR---GDPAYIDKI-LITKSQ 858

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
              + IK ++R TR PE+GDKFSSRHGQKGV G +V+QED PF+++GI PD+IMNPHGFPS
Sbjct: 859  DQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIMNPHGFPS 918

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGK++EL+ GKAGV  G+    +AF E     ++VE   E L+KHGFSY+GKD   S
Sbjct: 919  RMTVGKIVELISGKAGVLEGQILDSTAFKE-----NSVEQTCELLIKHGFSYSGKDCFTS 973

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            G TG PL AYIF GP++YQ+LKHMV DK+H R  GPR +LTRQPTEGR+++GGL++GEME
Sbjct: 974  GTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEME 1033

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLI YGAS LI ERLM SSD FE  VCR CG+L +       G C  CK G   + +K
Sbjct: 1034 RDCLIGYGASSLITERLMTSSDVFEAYVCRSCGVLAF------KGCCVACK-GTKPAKVK 1086

Query: 1134 LPYACKLLIQELQSMNIVPRLKL 1156
            +PYACKLL QEL SMNI+PRL +
Sbjct: 1087 MPYACKLLFQELMSMNILPRLHI 1109


>gi|190407518|gb|EDV10785.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces
            cerevisiae RM11-1a]
          Length = 881

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/904 (57%), Positives = 649/904 (71%), Gaps = 32/904 (3%)

Query: 260  VQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSI 318
            +Q+V G D  Y  +   ++EE + LDIYTQ++ALEY+  KVK          +EG     
Sbjct: 1    MQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEG--IEA 58

Query: 319  LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            +    +A++ V   +FR K  Y+A+M RR+V AM N   +DD+DYVGNKRLEL+GQL+SL
Sbjct: 59   IATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISL 118

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKR 436
            LFEDLFK   ++ + ++D +L KP+R+  +D  LS  +  ++IT GL R +STGN+ +KR
Sbjct: 119  LFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKR 178

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            FKM R G+T VL+RLS+I  LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC  DTPEGE
Sbjct: 179  FKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGE 238

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNLALMTH+TTD+EE P+  LCY LGVED+ L+    LH   ++ V  NG ++G 
Sbjct: 239  ACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHL--NYGVYLNGTLIGS 296

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
             R P  F    R LRR GK+ EF+S++ N  Q  V+IA+DGGR+CRPL+I   G SR+K+
Sbjct: 297  IRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKD 356

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             H+++LLDG   FDDFL+ GL+EYLDVNEEN++ IALYE D  P  TH+EIEPFTILG +
Sbjct: 357  IHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAV 416

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ  R+D+LLYL+ YPQ+P++ T+TIEL+
Sbjct: 417  AGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELI 476

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC   +K T + ++YAN T D
Sbjct: 477  DYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD 536

Query: 797  RI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             I  +R D  G    + Q           L  DGL   G  ++   +YINK  P  +  +
Sbjct: 537  IIGGMRVDENGDPIWQHQS----------LGPDGLGEVGMKVQSGQIYINKSVPTNSADA 586

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                     ++YR A   Y+GP  E   +D+V +    N    IK L+R  RRPELGDKF
Sbjct: 587  PNPNNVNVQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKF 644

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            SSRHGQKGVCG IV+QED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV  G 
Sbjct: 645  SSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGT 704

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
              YG+ FG        +E +S+ LV  GF+Y+GKDM+YSGITG  LQAYIF GPIYYQKL
Sbjct: 705  LEYGTCFG-----GSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKL 759

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDC+IAYGAS L+ ERLM+SS
Sbjct: 760  KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISS 819

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D FEV VC  CGL+GY      +G C+TCK+ +NI  M +PYA KLL QEL SMNI PRL
Sbjct: 820  DAFEVDVCDKCGLMGY------SGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRL 873

Query: 1155 KLAE 1158
            +L +
Sbjct: 874  RLED 877


>gi|19074837|ref|NP_586343.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
 gi|19069562|emb|CAD25947.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
          Length = 1110

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1163 (46%), Positives = 760/1163 (65%), Gaps = 96/1163 (8%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            + +L+  F   +GLV+QH++S++YFV+  I+ +VRAN  + S ID + +L++ D+R+  P
Sbjct: 6    RLELIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVAMP 65

Query: 91   SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRS 150
            S+  + V+  + P  CRL D+TY+A I V+IEYV+     +  + K DV IG++P+MLRS
Sbjct: 66   SVEENMVNYNVFPIECRLRDITYSANIYVDIEYVRN----RQIIVKRDVCIGKMPVMLRS 121

Query: 151  CRCVLYGKDEA----------ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
             RC L  + +            +    ECPLD GGYFI++G E+V+LIQEQLSKNR+II+
Sbjct: 122  SRCHLRRETKGPMEGRKTKDRRIRESQECPLDVGGYFIVRGIERVVLIQEQLSKNRIIIE 181

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            +  KG + ASVTSST+  KSKT +       YL  + F +++P++++MKA+G+  D+EV 
Sbjct: 182  SGPKG-LFASVTSSTDEHKSKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGLVQDREVA 240

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
            + VG++  Y  +++PS  EC +  I+T+E+AL Y+   +K      P ++R     ++L 
Sbjct: 241  ECVGKE--YFEIMVPSFGECMSKGIFTREQALLYISSYIKLK----PEDNRIEEVLTVLS 294

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
            +  L NV +   + R K  Y+A+M+RR+ +  LN    DDKD+VGNKR EL+GQL+S+LF
Sbjct: 295  EKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILF 354

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLSTGNFDVKRFK 438
            ED FK    E++K++D ILSK SR+  FD   F+    + IT  L R +STGN+++KRF+
Sbjct: 355  EDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLARAISTGNWNLKRFR 414

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            M R G+T VL+R S+I  LG MT+++  FEK+RKVSGPR+L  S WGMLCP DTPEGE+C
Sbjct: 415  MERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESC 474

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLAL+  +TT+ +  P++   Y LGV D+  +   E+H  + F V  NG I+G   
Sbjct: 475  GLVKNLALLAEITTNSDTKPILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITN 534

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE-- 616
            R     +  +  RR G +G+FVS++    +R ++IASD GRVCRPL+I DK  +RI +  
Sbjct: 535  RADFLVEQFKLHRRKGLVGKFVSIYKVTVERVIHIASDNGRVCRPLIIIDK--NRINQTI 592

Query: 617  --HHMKELLDGV---------------------RSFDDFLREGLIEYLDVNEENNALIAL 653
              + M E L  +                     +SF D L EG IEYLDVNEEN+ L+AL
Sbjct: 593  ISNQMDECLKALNISEKVAIESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEENDCLVAL 652

Query: 654  YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
               D   +TTH+EI  F ILG +AGL+P+PHHNQSPRNTYQCAMGKQA+G+I+ N   R 
Sbjct: 653  KPEDIGEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRF 712

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            DS++  L Y  RP+++T+ ++L+ Y+++ AGQNA VAVMSYSGYDIEDA+V+NK+S++RG
Sbjct: 713  DSVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERG 772

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
              R  V K  T + +K++N  SD +L P+   P                +LD+DGL  PG
Sbjct: 773  LFRVEVYKTTTTLLKKHSNGMSD-VLWPN---PKES-------------VLDEDGLGKPG 815

Query: 834  EIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
            ++++   VY+NK SP+             D  Y+   + ++   G+   +D++ L +   
Sbjct: 816  KMVRDGTVYVNKMSPV-------------DGTYKFTGKVHR---GDPAYIDKI-LITKSQ 858

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
              + IK ++R TR PE+GDKFSSRHGQKGV G +V+QED PF+++GI PD+IMNPHGFPS
Sbjct: 859  DQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIMNPHGFPS 918

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMTVGK++EL+ GKAGV  G+    +AF E     ++VE   E L+KHGFSY+GKD   S
Sbjct: 919  RMTVGKIVELISGKAGVLEGQILDSTAFKE-----NSVEQTCELLIKHGFSYSGKDCFTS 973

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            G TG PL AYIF GP++YQ+LKHMV DK+H R  GPR +LTRQPTEGR+++GGL++GEME
Sbjct: 974  GTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEME 1033

Query: 1074 RDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMK 1133
            RDCLI YGAS LI ERLM SSD FE  VCR CG+L +       G C  CK G     +K
Sbjct: 1034 RDCLIGYGASSLITERLMTSSDVFEAYVCRSCGVLAF------KGCCVACK-GTKPVKVK 1086

Query: 1134 LPYACKLLIQELQSMNIVPRLKL 1156
            +PYACKLL QEL SMNI+PRL +
Sbjct: 1087 MPYACKLLFQELMSMNILPRLHI 1109


>gi|396082394|gb|AFN84003.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon romaleae
            SJ-2008]
          Length = 1110

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1161 (46%), Positives = 759/1161 (65%), Gaps = 92/1161 (7%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            + +L+  F K +GLV+QH++S++YFV+  I+ ++RAN  + S ID + +L++ D+R+G P
Sbjct: 6    RLELIKLFFKEKGLVRQHIESYDYFVDHEIKALMRANQIVDSDIDHTFYLKYLDIRVGMP 65

Query: 91   SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRS 150
            S+  + V+  + P  CRL D+TY+A I V+IEYV+     +  + K DV IG++P+MLRS
Sbjct: 66   SIEENMVNYNVFPIECRLRDVTYSANIYVDIEYVRN----RQIIVKRDVCIGKMPVMLRS 121

Query: 151  CRCVLY--GKDEAELARL--------GECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
             RC L    K   E +R          ECPLD GGYFII+G E+V+LIQEQLSKNR+II+
Sbjct: 122  SRCHLRKEAKGSIEGSRTRDRKIKESQECPLDVGGYFIIRGIERVILIQEQLSKNRIIIE 181

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            +  KG + ASVTSST+  KSKT + ++    YL  + F ++IP+++VMKA+G+  D+E+ 
Sbjct: 182  SGPKG-LFASVTSSTDEHKSKTSVTIKDDCYYLKNSMFNEEIPVVIVMKALGLTQDKEIA 240

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
            + VG++  Y  +++PS  EC   +++T+E+AL Y+   ++      P ++R     +IL 
Sbjct: 241  ECVGKE--YFEIIVPSFGECILKEVFTKEQALLYISNYIRLR----PEDNRIEEVLTILS 294

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
            +  L NV +   N R K  Y+A+M+RR+ +  LN    DDKD+VGNKR EL+GQL+S+LF
Sbjct: 295  EKVLPNVQIEGCNLRKKGIYIALMIRRLTQTRLNILKEDDKDFVGNKRFELAGQLLSILF 354

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI--VRDSITVGLERTLSTGNFDVKRFK 438
            ED FK    E++K++D ILSK SR+  FD   F+    + IT  L R +STGN+++KRF+
Sbjct: 355  EDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNWNLKRFR 414

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            M R G+T VL+R S+I  +G MT+++  FEK+RKVSGPR+L  S WGMLCP DTPEGE+C
Sbjct: 415  MERSGVTHVLSRHSYISAVGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESC 474

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLAL+  +TT+ +  P++ L + LG  D+  +   E+H    F V  NG I+G   
Sbjct: 475  GLVKNLALLAEITTNSDTRPVLDLIFKLGAVDINSVYTREIHQEGMFSVFLNGDIVGIID 534

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI------- 611
                F +  +  RR G +G+FVS++    +R ++IASD GRVCRPL++ DK         
Sbjct: 535  NVDFFVEQFKLHRRKGLVGKFVSIYKVRTERVIHIASDNGRVCRPLIVIDKKKINQMIVS 594

Query: 612  -------------SRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYE 655
                          +I+    K  LD     RSF D L EG IEYLDVNEEN+ LIAL  
Sbjct: 595  NEVDKCFEALNIPQKIEMEKGKSFLDCYLKYRSFSDLLEEGFIEYLDVNEENDCLIALRP 654

Query: 656  GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             D   +TTH+EI  F ILG +AGL+P+PHHNQSPRNTYQCAMGKQA+G+I+ N   R DS
Sbjct: 655  EDIVEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDS 714

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            ++  L Y  RP+++T+ ++L+ Y+++ AGQNA VAVMSYSGYDIEDA+V+NK+S++RG  
Sbjct: 715  VILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKASIERGLF 774

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R  V K  T + +K+++  SD +L P+   P                +LDDDGL  PG++
Sbjct: 775  RVEVYKTTTTLLKKHSSGMSD-VLWPN---PKES-------------VLDDDGLGKPGKM 817

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +K   +Y+NK SP+             D  Y+   + ++   G+   +D+V L +     
Sbjct: 818  VKDGTIYVNKMSPI-------------DGVYKFTGKIHR---GDPAYIDKV-LITRSQDQ 860

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
            + IK ++R TR PE+GDK SSRHGQKGV G IV+QED PF+++G+ PD+IMNPHGFPSRM
Sbjct: 861  VLIKTMLRQTRPPEIGDKLSSRHGQKGVVGLIVRQEDMPFNDQGVVPDIIMNPHGFPSRM 920

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK+IEL+ GKAGV  G+    +AF E     ++VE     L  HGFSY+GKD   SG 
Sbjct: 921  TVGKIIELISGKAGVVEGKIFDSTAFKE-----NSVEETCNILASHGFSYSGKDCFTSGT 975

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG PL AYIF GP++YQ+LKHMV DK+H R  GPR +LTRQPTEGR+++GGL++GEMERD
Sbjct: 976  TGAPLTAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERD 1035

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            CLI YGAS LI ERLM+SSD FE  VC+ CG+L + +       C  CK+    S +K+P
Sbjct: 1036 CLIGYGASSLITERLMISSDVFEAYVCKSCGVLAFKD------CCVVCKDTKP-SKIKMP 1088

Query: 1136 YACKLLIQELQSMNIVPRLKL 1156
            YACKLL QEL SMNI+PRL +
Sbjct: 1089 YACKLLFQELMSMNILPRLHI 1109


>gi|358339203|dbj|GAA47313.1| DNA-directed RNA polymerase III subunit RPC2 [Clonorchis sinensis]
          Length = 1141

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1164 (45%), Positives = 759/1164 (65%), Gaps = 56/1164 (4%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR 81
            +AP+ ++ +K  L+P FL  +GLVK H+DS+N+F+ T I+ IVRAN+R VS  + + +L 
Sbjct: 3    SAPI-TLHNKHALVPSFLASKGLVKLHIDSYNHFIETEIKNIVRANNR-VSVPEANWWLE 60

Query: 82   FKDVRIGQPSMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
            + DV +  P++   GV + ++ PH CRL D+TYA  ILV++ +++    +   + K  V+
Sbjct: 61   YNDVYVRSPTVNDGGVVASRVTPHDCRLRDLTYAGEILVDVTFMR----QNEIVSKRGVL 116

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IGR+P+ML+S  C+L GK  +EL RL ECPLDPGGYFII GTEKV+L+QEQ+SKNR+I++
Sbjct: 117  IGRMPVMLKSSVCILNGKTPSELMRLKECPLDPGGYFIIGGTEKVILMQEQMSKNRLIVE 176

Query: 201  TDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
             D K  +  SVTSS+   KSKT I M+  K +L  N F   +P+ ++ KAMG+ SDQE++
Sbjct: 177  EDSKRGLVCSVTSSSAQTKSKTNIIMKDDKFFLAHNSFTVDVPVAILFKAMGITSDQEIL 236

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF------GSP-----PN 309
              +G +    A  +PS+++C    ++T+  A  +L+ ++++  F      G P     P 
Sbjct: 237  HYIGTEESIWANFVPSLKQCLESSVHTRLDACRWLQSRLQQRRFRPGLTSGKPTRPDCPV 296

Query: 310  DREGRAFSI---LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
              E     +   +RD+ + +V +   NF P+  ++  M+R ++ A  ++   DD+D+ GN
Sbjct: 297  SEEDVVLDMQRFIRDIIITHVEMEKFNFAPRALFLGQMVRYLILANEHQIPPDDRDFYGN 356

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            KR+EL+G L++LLFED+FKT   ++  TV  I +K  R + FD+S+ I    IT  L R 
Sbjct: 357  KRIELAGSLLALLFEDVFKTFNEDMWLTVSKIDTK-RRCTPFDISRHIKTWMITEQLNRA 415

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +S+GN+ +KRF+M R G+TQ+++RLS++  LGHMTR++  FEK+RKVSGPR++  SQWG 
Sbjct: 416  ISSGNWIIKRFRMMRHGVTQIVSRLSYVAALGHMTRMTSTFEKTRKVSGPRSIHASQWGF 475

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            +CP DTPEGEACGLVKN+ALM HVT + ++  LI L     V  L     + L+    F+
Sbjct: 476  VCPSDTPEGEACGLVKNVALMCHVTVEMDDTELIRLLSSYYVMPLH----QFLYGRTEFI 531

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  +G   +P   A ++R LRR+G+I  FVSV + +  RCV++ SDGGR+CRP ++
Sbjct: 532  IYVNGKPIGFTEQPGKLAALIRGLRRSGRIDCFVSVHIKQAHRCVHVVSDGGRLCRPYIV 591

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT--TH 664
                   + +  +++L+  V S+DDFL++G+IEYLD NE N+ L+A+ E   +     TH
Sbjct: 592  VANNRPLVTQAMLEDLVHNVLSWDDFLKKGVIEYLDANELNDCLVAMDESYLSDGNKYTH 651

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EI+P TILGV+AGLIPYP HNQSPRNTYQCAMGKQA+G +A NQ  R D+L Y +VYPQ
Sbjct: 652  MEIDPATILGVVAGLIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQYQMVYPQ 711

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL+ ++TI+++ +D+L AGQNA VA+MSYSGYD+EDA+++N++SLDRGF R  V ++  
Sbjct: 712  KPLVQSKTIQMMHFDELPAGQNAIVAIMSYSGYDVEDALIVNRASLDRGFARACVYRRAG 771

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               + + N+  DR++     GP  +R   +      L  L  DG A  G       + +N
Sbjct: 772  VHLKMHENAVYDRLM-----GPSVDRETGLPRRGDEL--LQADGTAFVGARASDRQILVN 824

Query: 845  KESPLETRGSIMSPTGQ---------TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            KE P+    +     GQ         + + +R     YKG   E   V++V   + +   
Sbjct: 825  KEMPVVKVNAAQDNAGQLGLHGGTHESMTEFRRCPADYKGI--EPSYVEKVMFSTSEGNQ 882

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K L+R TRRPE+GDKFSSRHGQKGV G IV+QED PFS  G+ PD+IMNPHGFPSRM
Sbjct: 883  AVVKVLLRQTRRPEVGDKFSSRHGQKGVVGLIVRQEDMPFSMHGLVPDVIMNPHGFPSRM 942

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TVGK++ELLG KAG   GR   GSAF       D+ ES+S  L++HG  Y GK+++YSG+
Sbjct: 943  TVGKLLELLGSKAGAIEGRIRDGSAFS-----GDSAESLSRVLIEHGHHYLGKEVLYSGV 997

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG PL+AYI+ GP+YYQ+LKHMV+DK+HAR  GP   LTRQPTEGR+R GGLR+GEMERD
Sbjct: 998  TGAPLEAYIYFGPVYYQRLKHMVMDKVHARSRGPVTALTRQPTEGRSREGGLRIGEMERD 1057

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            C IAYG S L+ ERL+ SSD ++  VC  CGLL           C  C++   + ++++P
Sbjct: 1058 CFIAYGTSQLLVERLLTSSDVYDACVCEKCGLLA-----TSRVWCQYCRSSRQVVTVRMP 1112

Query: 1136 YACKLLIQELQSMNIVPRLKLAEA 1159
            YACKLL QEL  M I+PRL L   
Sbjct: 1113 YACKLLFQELMCMRILPRLSLGHT 1136


>gi|412992275|emb|CCO19988.1| DNA-directed RNA polymerase III subunit RPC2 [Bathycoccus prasinos]
          Length = 1251

 Score = 1039 bits (2686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/862 (59%), Positives = 634/862 (73%), Gaps = 24/862 (2%)

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
            R   A  I   V LA+VPV + +FR K  YV VM+RR++ A LN + +DDKDY GNKRLE
Sbjct: 401  RSDEARDIFAGVVLAHVPVEDYDFRGKSAYVCVMIRRILLANLNPEEVDDKDYYGNKRLE 460

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTG 430
            L+GQL++LLFED FK + +++++  D +LSK +R+ +FD+ + I +D+I+ GLE  +STG
Sbjct: 461  LAGQLLALLFEDCFKRLNADLKRQADAVLSKANRAQQFDVVKCIRQDTISNGLEHAISTG 520

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+ VKRF+M RKG+TQVL+RLSFI  +G MTR++ QFEK+RKVSGPRALQPSQWGMLCP 
Sbjct: 521  NWTVKRFRMERKGVTQVLSRLSFISAIGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPS 580

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            DTPEGE+CGLVKNLALMTHVTTD +E PLI L   LG E LE L+GEELH  +S LV+ N
Sbjct: 581  DTPEGESCGLVKNLALMTHVTTDSDEEPLIKLARALGCELLEHLAGEELHQKDSALVLLN 640

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G ILG   +PK FAD  RKLRR+G+I EFVSV V +    V+IASDGGRVCRPL++ D+ 
Sbjct: 641  GSILGSVSQPKQFADKFRKLRRSGRISEFVSVHVTKG--FVHIASDGGRVCRPLIVVDET 698

Query: 611  ISRI--KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-THIEI 667
              R+  K+ H+  L +    FDDFL+ G +EYLDVNEEN+A IAL+E D T D  TH EI
Sbjct: 699  TGRLKMKQKHLDALKNKEWVFDDFLKRGYVEYLDVNEENDAYIALHEKDLTADAHTHCEI 758

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
            EPFT+LGV AG+IP+PHHNQSPRNTYQCAMGKQAMGN+AFNQL RMD+L+Y L   Q+PL
Sbjct: 759  EPFTLLGVCAGIIPFPHHNQSPRNTYQCAMGKQAMGNLAFNQLNRMDTLMYTLCSAQKPL 818

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            +TT+TIEL+ YD+LGAGQNA +AV+S +GYDIEDA+V+N++SLDRGFGRC V +KY+A  
Sbjct: 819  VTTKTIELIQYDRLGAGQNAVIAVLSNTGYDIEDAVVINRASLDRGFGRCQVSRKYSATM 878

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +KYAN T D++L+P  T       Q+    N    +LDDDG A  G  I+  D+YINK  
Sbjct: 879  KKYANRTQDKVLKPSIT-------QMKKMKN--YRVLDDDGYAQVGVRIRNKDIYINKHM 929

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            PL TR  + +P    D  +R A Q Y+GP+ + CVVD+V L         +K L+RHTRR
Sbjct: 930  PLNTRDPMTNPDQLPDREFRPAPQVYRGPEVDECVVDKVMLTVTDENQFVVKTLVRHTRR 989

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PE+GDKFSSRHGQKGV G I+ QEDFP +ERGICPDL+MNPHGFPSRMTVGK+IELL GK
Sbjct: 990  PEVGDKFSSRHGQKGVVGAILPQEDFPCTERGICPDLVMNPHGFPSRMTVGKLIELLAGK 1049

Query: 968  AGVSCGRFHYGSAFGE----------PSGHADTVESISETLVKHGFSYNGKDMIYSGITG 1017
            A    G F   SAF             +   ++V+ I E L+K G++ +GK+ +  G+TG
Sbjct: 1050 AASEEGTFRDASAFASNDISSATAAGTTNKNESVDEIGEALLKAGYASDGKETLICGLTG 1109

Query: 1018 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1077
              LQA IF GP+YYQKLKHMVLDKMHAR  GPRV+LTRQPTEGRAR GGLR+GEMERDCL
Sbjct: 1110 EYLQARIFTGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRARQGGLRLGEMERDCL 1169

Query: 1078 IAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            I YGAS L+ ERLM+S+D F+ QVC  CGLL Y +       C +C     ++++K+PYA
Sbjct: 1170 IGYGASALVLERLMISADVFDAQVCVTCGLLAYRDKASGRDCCHSCGIKAEVATLKVPYA 1229

Query: 1138 CKLLIQELQSMNIVPRLKLAEA 1159
            CKLL QELQSMNI PR+ L EA
Sbjct: 1230 CKLLFQELQSMNICPRIALDEA 1251



 Score =  313 bits (802), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 156/287 (54%), Positives = 211/287 (73%), Gaps = 11/287 (3%)

Query: 24  PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLR 81
           P+K++ DKF+LLP FLKVRGLV+QH++SF+Y ++  I+KIV  +AN+++    DP+ +LR
Sbjct: 45  PIKTMKDKFELLPAFLKVRGLVRQHIESFDYLIDEEIKKIVSAKANNKVTCDSDPNFYLR 104

Query: 82  FKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
           +K+V +G P  TVD   V + + P  CRL DMTYAAP++V++EY +G    K  +  +DV
Sbjct: 105 YKNVSVGSPQ-TVDERMVKQDITPQQCRLRDMTYAAPVMVDVEYTKG----KDIITTHDV 159

Query: 140 VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
            IG+IP+MLRS RC L  K E ELARLGECPLDPGGYF++KG EKV+LIQEQLSKNRVII
Sbjct: 160 CIGKIPLMLRSSRCCLRNKGEDELARLGECPLDPGGYFVVKGVEKVILIQEQLSKNRVII 219

Query: 200 DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
           + D KG I ASVTSST   KSKT +  + GK+YL  N F + IPI++ +KAMG+ESDQE+
Sbjct: 220 ERDAKGLICASVTSSTHERKSKTNVVQKGGKLYLKHNTFQEDIPIVIALKAMGLESDQEL 279

Query: 260 VQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
           +Q    G DP   +LL PS++EC  LD++TQ +ALEY   +++ S +
Sbjct: 280 MQKAAGGSDPLCMSLLAPSLQECTALDVFTQSEALEYCGQRIRSSQW 326


>gi|313237761|emb|CBY12898.1| unnamed protein product [Oikopleura dioica]
          Length = 1139

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1177 (46%), Positives = 743/1177 (63%), Gaps = 142/1177 (12%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLD--SFNYFVNTGIRKIVRANDRIVSGIDPSIFLRF 82
            +  V +K++L+P FL+ RGLVKQHLD  SFNY +  G++KI++AN R  + +D + F  +
Sbjct: 13   ISEVQEKWKLVPAFLETRGLVKQHLDLDSFNYLLTQGLQKIIKANAR--TDVDQNFFWNY 70

Query: 83   KDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
              + +  P +     SE + PH CRL DMTY+API V++ YV+ +   K       +VIG
Sbjct: 71   DHIYVDPPDVEYGMRSEAITPHECRLRDMTYSAPIKVDVTYVRDNQIRKA----RGLVIG 126

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            R+PIMLRS RCVL    + +  +  ECPLDPGGYF++KG EKVLL+QEQ   NR++++ D
Sbjct: 127  RMPIMLRSARCVLANMSQEQFFKAKECPLDPGGYFVVKGAEKVLLMQEQAVSNRILVEKD 186

Query: 203  KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
            K G   A V S ++T  ++T +   K K+Y+  N+  + + ++V+ KA+G+E DQE+ ++
Sbjct: 187  KTGMFCAVVKSKSDTANTQTNLIQSKNKIYVKQNKLREPVNVVVLFKALGIERDQEIAEL 246

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK--------VKRSTFGS-----PPN 309
            +  +    ALL PS+ EC  L+I++Q +A++YLE          V RS   S      P 
Sbjct: 247  IATEDSTLALLAPSLFECQQLEIFSQNQAMKYLEKTIMRIQNPIVSRSQMQSRFQVRTPR 306

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
            +RE    + L    L NVP         C+      R M++A       DD+DY GNKR+
Sbjct: 307  NREQEVHNWLVSTLLVNVPY--------CY----KRRGMIKA-------DDRDYYGNKRI 347

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF-IVRDSITVGLERTLS 428
            +L+G L+SLLFE+ FK    E+++T+   L K +      +S    +++ IT+ +E  + 
Sbjct: 348  QLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQVVDVISSMKSLQNKITLAMEAAIQ 407

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTL--GHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            TGN+++KRFKM RKG+T++L R+SFI  +  G MTR+   FEK+ KV+GPRALQ SQWGM
Sbjct: 408  TGNWNLKRFKMDRKGITEILNRMSFISIILVGTMTRIKGHFEKTMKVTGPRALQGSQWGM 467

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            LCP DTPEG  CGLVKN+AL++HVTT E++ P+  L   LGVE+   LSG +LH  N +L
Sbjct: 468  LCPSDTPEGAQCGLVKNMALLSHVTTFEDDKPIHRLLINLGVEETSTLSGYDLHGAN-YL 526

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++G  R PK     ++ +RRAG++ EFVSV+V+E+ R VY+ASDGGR+ RP +I
Sbjct: 527  VFLNGALVGATRNPKSLTRTVQLIRRAGRLPEFVSVYVSEEHRAVYLASDGGRLTRPCII 586

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI- 665
             + G  ++ + H+  LL+G   F DF++ GLIEYLDVNEEN+ALI         DTT   
Sbjct: 587  VENGRPKVTQKHINALLEGRVKFPDFVKNGLIEYLDVNEENSALI---------DTTFFN 637

Query: 666  ----------------------------------EIEPFTILGVIAGLIPYPHHNQSPRN 691
                                              EIEPF +LGV AGLIPYP HNQSPRN
Sbjct: 638  YFRKIFFNQNLINRWLKRAYLNFKKVNNFLNCSKEIEPFALLGVCAGLIPYPDHNQSPRN 697

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQCAMGKQAMG IA NQ  R+DS LY LVYPQRPL+ TRTIEL+G+++L AGQNATVAV
Sbjct: 698  TYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIGFEQLPAGQNATVAV 757

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK---YANSTSDRILRPDRTGPGA 808
            MSYSGYDIEDA+V+NK+S+DRG+GRC+V +      Q+      +  +RI  P       
Sbjct: 758  MSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQRRGTLVETIEERIDGPALDAKSG 817

Query: 809  ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRS 868
            E+++           LD DG+ APGE +K     + K  P+                   
Sbjct: 818  EKIRADE-------CLDMDGIVAPGERVKDRAPTMAKSQPIH------------------ 852

Query: 869  ARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIV 928
                          ++RV +  D    + +K   R TRRPELGDKFSSRHGQKGV G IV
Sbjct: 853  --------------IERVMISEDATWRM-VKLSYRQTRRPELGDKFSSRHGQKGVTGLIV 897

Query: 929  QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHA 988
             QE+ PF+E G+CPD+IMNPHG+PSRMTVGK++E +G KAG   G+FHYG+AFG      
Sbjct: 898  PQENMPFNEIGMCPDVIMNPHGYPSRMTVGKLMECIGSKAGALSGKFHYGTAFG-----G 952

Query: 989  DTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSG 1048
            +T E +++T++ +GF+Y GKD++ SG TG PL+AYIFMGPIYYQKL+HMV+DKMHAR +G
Sbjct: 953  NTTEEMAQTMLDYGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMHARATG 1012

Query: 1049 PRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL 1108
                LTRQP EGRA++GGLR+GEMERD L+AYGAS L+ ER   SSD + V++C  CGL 
Sbjct: 1013 KVHNLTRQPLEGRAKDGGLRLGEMERDALLAYGASNLLNERFFYSSDKYSVEICGNCGLH 1072

Query: 1109 GYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            GY      +G C  C+ G++++S+ +PYACKLL+QEL
Sbjct: 1073 GY------SGWCRVCRTGEHMASINMPYACKLLLQEL 1103


>gi|449015921|dbj|BAM79323.1| RNA polymerase III second largest subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1269

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1276 (43%), Positives = 781/1276 (61%), Gaps = 154/1276 (12%)

Query: 20   KLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF 79
            +LA+PV+ +  K++L+P +L+ + L++ H+ SFNYFV+T ++KIV+ N  + S      F
Sbjct: 11   ELASPVRDLEYKWKLIPLYLQAQPLIRHHIASFNYFVDTELKKIVKWNGYVTSEASSQWF 70

Query: 80   LRFKDVRIGQPSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
            L++ D+R+G PS+   VD V   L PH CR+SD+TYAAPI V+IE+      E  +    
Sbjct: 71   LKYLDIRVGTPSVYEHVD-VQRPLTPHQCRVSDLTYAAPIFVDIEHYHCGRRETVS---- 125

Query: 138  DVVIGRIPIMLRSCRC-VLYGKDEAELA-RLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            ++ IG +PIMLRS RC +L  + + ELA R  ECPLDPGGYFI++G E+V++IQEQL KN
Sbjct: 126  NLFIGYLPIMLRSSRCCLLQARSDTELAERFRECPLDPGGYFIVRGAERVIVIQEQLCKN 185

Query: 196  RVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMES 255
            R++I+ D +G++ A+VTSST   KS+T +     +++L  N   + IPI+V+ +AMG+ S
Sbjct: 186  RMLIELDSRGDLCATVTSSTAERKSRTAVVYRGERLFLRHNTLTEDIPIVVIFRAMGIRS 245

Query: 256  DQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYL----------------EGKV 299
              E V ++  D   ++LL PS+E    L +++   AL Y+                E   
Sbjct: 246  AAEQVALISWD---ASLLEPSLEHAERLGVHSASDALRYIGQRLRSLSRLYAWRSAEIAT 302

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
            ++     P  + E RA  +LR + L ++P    +F  KC Y+A+M+R ++ A  N +++D
Sbjct: 303  EQRQRRKPSLEEEARA--LLRTLVLPHIPCDGIDFSDKCLYLALMIRGVLAAKANPESLD 360

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            DKDY GNKRLEL+G L++LLFEDLFK + +++++  D +L+KPSR+  FD+++ I  ++I
Sbjct: 361  DKDYYGNKRLELAGPLLALLFEDLFKKLNADIRRHADQVLAKPSRTQDFDVTRCIRSETI 420

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            + G E  LS+GN+ +KRF+M R+G+TQVL+RLS++  +G M+R++ QFEK+RK+SGPRAL
Sbjct: 421  SHGFEHALSSGNWALKRFRMERQGVTQVLSRLSYVAVIGMMSRITSQFEKTRKISGPRAL 480

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
            QPSQWGM+CPCDTPEGE+CGLVKNLAL+  VTT+EE+  +  L Y LG +D+  L+  +L
Sbjct: 481  QPSQWGMVCPCDTPEGESCGLVKNLALLADVTTEEEDTAVRRLVYDLGTQDIRALADYDL 540

Query: 540  HNPNSF---------------------LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
             +  S+                     LV  NGL+LG H  P    + +R  R+ G +G 
Sbjct: 541  ASSESWRSASGDGLRPAGAPDADERPALVFVNGLLLGMHLHPSALTEQLRAHRQRGALGA 600

Query: 579  FVSVFVNEKQ--RCVYIASDGGRVCRPLVIAD--KGISRIKEHHMKELLDGVRSFDDFLR 634
            F+S++ +  +  R V++A+D GRVCRPL++ D  +G  R++  H+++L  G+  ++D L+
Sbjct: 601  FLSIWESSTRAWRAVHVATDAGRVCRPLLVVDRERGTLRLQRRHLEDLELGLLRWEDLLQ 660

Query: 635  EGLIEYLDVNEENNALIAL----------------YEGDATPDTTHIEIEPFTILGVIAG 678
            +G++EYLD NEEN+ALIAL                     T   TH+EI P +ILG  AG
Sbjct: 661  QGIVEYLDPNEENDALIALDIAQLQQDDRQQEQEQRLTQKTNRYTHLEISPESILGACAG 720

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            LIP+ +HNQSPRNTYQCAM KQA+G +A+NQ  R D+LLYLL YPQRPL+ TR +E   Y
Sbjct: 721  LIPFANHNQSPRNTYQCAMSKQAIGAMAYNQHLRTDALLYLLNYPQRPLVQTRAVEFTHY 780

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
             +L  GQNA VAVMSYSGYDIEDA+V+N++S+DRG GRC V++KY    + Y N T D I
Sbjct: 781  HRLPGGQNAVVAVMSYSGYDIEDALVVNRASVDRGLGRCTVLRKYPVSLRVYPNGTRDTI 840

Query: 799  --------------------------------LRPDRTGPGAE-RMQVVHHSNLLLLILD 825
                                            +   R+  G E  +        L   LD
Sbjct: 841  EPAMTTTTTTTTPTVAYTTATEGAPGTTASISVTGVRSTSGQEPELAAERRRRYLEQALD 900

Query: 826  DDGLAAPGEIIKPNDVYINKESPLET------RGSIMSPTGQT----------------- 862
             DG+ APG  + P  + +NK  P ET      R    S  G +                 
Sbjct: 901  SDGIVAPGMPLPPGAILVNKVMPTETLHQPLLRSGPESQAGHSTALTAGAAAGAAAAAAA 960

Query: 863  --------------DSRYRSARQ----TYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
                           S  RS R+     Y+ P G   VVD+V +  D+N    IK ++R 
Sbjct: 961  GTTGTQRDAAGSLASSWQRSLRRPAPAVYRAPGG-AGVVDQVLVTQDQNDLRLIKVMVRQ 1019

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPF-SERGICPDLIMNPHGFPSRMTVGKMIEL 963
            TRR   GDK++SR GQKGV G I  + D P+    GI PD++ NPHG PSRMTVGK+ EL
Sbjct: 1020 TRRVVEGDKYASRFGQKGVVGLIPPETDLPWHGNSGIRPDIVFNPHGMPSRMTVGKVFEL 1079

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GKA    G     +AF E +G  D+ E+ +E L++ G+SY G+D++YSGITG PL A+
Sbjct: 1080 IAGKAAALDGCLRDATAFVERTG-LDSTEACAEVLLRSGYSYAGRDLLYSGITGEPLAAH 1138

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F GPIYYQ+LKHM +DK   R  GPR +LTRQPTEGR+R+GGLR+GEMERD L+ +GAS
Sbjct: 1139 VFFGPIYYQRLKHMAVDKCFGRARGPRAVLTRQPTEGRSRDGGLRLGEMERDSLLGHGAS 1198

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
            +L+ ERLM SSD F   VC  CG LG  +       C  C+ GD +  + LPYACKLL Q
Sbjct: 1199 LLVLERLMYSSDAFTAFVCESCGYLGARD------WCQVCRRGDAMQRVLLPYACKLLFQ 1252

Query: 1144 ELQSMNIVPRLKLAEA 1159
            ELQ+MNIV +L+L EA
Sbjct: 1253 ELQAMNIVTKLRLGEA 1268


>gi|256081821|ref|XP_002577166.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043958|emb|CCD81504.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1128

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1150 (46%), Positives = 755/1150 (65%), Gaps = 56/1150 (4%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            K  L+P FL  +GLVK H+DSFN+F+ T I+ IVRAN R VS  + + +L + D+ I  P
Sbjct: 4    KHYLVPSFLASKGLVKLHIDSFNHFIQTEIKNIVRANSR-VSVPEANWWLEYNDIYIKPP 62

Query: 91   SMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLR 149
            ++   GV + ++ PH CRL D+TYA  ILV++ +V+    +   + K  V+IGR+PIML+
Sbjct: 63   TVNDGGVVASRVTPHDCRLRDLTYAGEILVDVTFVR----QNEVVSKKGVLIGRMPIMLK 118

Query: 150  SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA 209
            S  CVL GK  +EL RL ECPLDPGGYFII GTEKV+L+QEQ SKNR+II+ D K  +  
Sbjct: 119  SSICVLNGKSPSELMRLKECPLDPGGYFIIGGTEKVVLMQEQTSKNRLIIEEDSKRGLVC 178

Query: 210  SVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY 269
            SVTSS+   KSKT I  +  K YL  N F+  +PI ++ KAM + SDQE++Q++G +   
Sbjct: 179  SVTSSSAQTKSKTNIVTKDDKFYLSHNSFIVDVPIAILFKAMNITSDQELLQLIGTEESV 238

Query: 270  SALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSPPNDREGRAF--------- 316
             A  +PS++ C   +I+T   A  +L  +++    R+ FG+    R              
Sbjct: 239  WANFVPSLKLCLEYNIHTCLDACNWLHSRLRQPRYRTAFGAGRTLRTAANILETDIILEI 298

Query: 317  -SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
               LRD+ + +V +   NF P+ F++  M+R ++ A   +   DD+D+ GNKR+EL+G L
Sbjct: 299  QRFLRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPPDDRDFYGNKRIELAGSL 358

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
            ++LLFED+FKT   ++  TV  I +K  R + FD+S+ I    IT  L R +S+GN+ +K
Sbjct: 359  LALLFEDVFKTFNEDLWLTVSKIDTK-RRCTPFDISRHIKTWMITEQLNRAISSGNWIIK 417

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF+M R G+TQV++RLS++  LGHMTR++ QFEK+RKVSGPR++  SQWG++CP DTPEG
Sbjct: 418  RFRMMRHGVTQVVSRLSYVAALGHMTRMTSQFEKTRKVSGPRSIHASQWGLICPSDTPEG 477

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLC---YCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            EACGLVKN+ALM HVT + ++  LI L    Y   +  +        +  N +++  NG 
Sbjct: 478  EACGLVKNVALMCHVTVEVDDAHLIELISNYYTFPLYQMR-------YAKNEYVIYVNGK 530

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
             +G  + P     ++R LRR+G+I  FVSV++ +  +CV++ SDGGR CRP +I   G  
Sbjct: 531  PIGFTQHPGKLCVLIRGLRRSGRIHGFVSVYIKQAYQCVHVVSDGGRFCRPYIILCNGRP 590

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT--THIEIEPF 670
             + E  +++L   V ++DD L++GL+EYLDVNE N+ L+A+ E   T     TH+EI+P 
Sbjct: 591  LVTESVLQDLRHNVLNWDDLLKKGLVEYLDVNELNDCLVAMDESCLTDGNHYTHMEIDPA 650

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
            TILGV+AGLIPYP HNQSPRNTYQCAMGKQA+G +A NQ  R D+L   +VYPQ+PL+ +
Sbjct: 651  TILGVVAGLIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQS 710

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +TI+++ +D+L AGQNA VA+MSYSGYD+EDA+V+N++S+DRGF R  V ++     + +
Sbjct: 711  KTIQMMHFDELPAGQNAVVAIMSYSGYDVEDALVINQASIDRGFARACVYRRSGVHLKMH 770

Query: 791  ANSTSDRILRPDRTGPGAER-MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
             N+  DR++     GP  ER   V+   +    +L  DG+A  G  +    + INKE P+
Sbjct: 771  ENAVYDRLM-----GPSIERETGVLRRGD---EVLQADGVAYIGACVNDRQILINKEMPV 822

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
             +  +++   G    +++     YKG   E   V++V   + +     +K L+R TRRPE
Sbjct: 823  VSSSAVLDNAGSL--KFKRCPVDYKGI--EPSYVEKVMFSTSEGNQAVVKILLRQTRRPE 878

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKFSSRHGQKGV G IV+QED PFS  G+ PD+IMNPHGFPSRMTVGK++E+LG KAG
Sbjct: 879  VGDKFSSRHGQKGVVGLIVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAG 938

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
               G+   GSAF       D  E +S+ L+ HG+ Y GK+++YSG+TG PL+A+I+ GP+
Sbjct: 939  AIEGKIRDGSAFS-----GDPAEVLSQVLIDHGYHYLGKEILYSGVTGAPLEAFIYFGPV 993

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQ+LKHMV+DK+HAR  GP   LTRQPTEGR+R GGLRVGEMERDC IAYG S L+ ER
Sbjct: 994  YYQRLKHMVMDKVHARSRGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGTSQLLLER 1053

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L++SSD ++  VC  CGLL           C  C++   + S+++PYACKLL QEL  M 
Sbjct: 1054 LLLSSDAYDACVCEKCGLLA-----TSPNWCQYCRSSRQVVSVRMPYACKLLFQELMCMR 1108

Query: 1150 IVPRLKLAEA 1159
            I+PRL+L  A
Sbjct: 1109 ILPRLRLRAA 1118


>gi|193787264|dbj|BAG52470.1| unnamed protein product [Homo sapiens]
          Length = 838

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/854 (59%), Positives = 626/854 (73%), Gaps = 22/854 (2%)

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G P   +   A  +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY 
Sbjct: 4    GGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYY 62

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLE 424
            GNKRLEL+GQL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+ 
Sbjct: 63   GNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMV 121

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
              +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQW
Sbjct: 122  NAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQW 181

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GMLCP DTPEGEACGLVKNLALMTH+TTD E+GP++ L   LGVED+ LL GEEL  PN 
Sbjct: 182  GMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNV 241

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
            FLV  NG ILG  R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP 
Sbjct: 242  FLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPY 301

Query: 605  VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTH 664
            +I  K    +   HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH
Sbjct: 302  IIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTH 361

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
            +EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ
Sbjct: 362  LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 421

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K   
Sbjct: 422  KPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 481

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               ++Y N T D+++ P      A R  +  H      ILD DG+ +PGE ++   V +N
Sbjct: 482  CTLKRYTNQTFDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVN 534

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K  P  T+  +         +Y+    TYKG       +++V + S+      IK L+R 
Sbjct: 535  KSMPTVTQIPLEGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQ 592

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL
Sbjct: 593  TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELL 652

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GKAGV  GRFHYG+AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI
Sbjct: 653  AGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYI 707

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            + GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASM
Sbjct: 708  YFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASM 767

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            L+ ERLM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QE
Sbjct: 768  LLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQE 821

Query: 1145 LQSMNIVPRLKLAE 1158
            LQSMNI+PRLKL++
Sbjct: 822  LQSMNIIPRLKLSK 835


>gi|342179780|emb|CCC89254.1| putative DNA-directed RNA polymerase III [Trypanosoma congolense
            IL3000]
          Length = 1137

 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1154 (46%), Positives = 742/1154 (64%), Gaps = 74/1154 (6%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K  LLP  + ++GL+  HL SF++ +   + +I+   +N  I S IDP   +R+ ++R+ 
Sbjct: 16   KLALLPALINMKGLLNHHLASFDHLIKVELGRILLNESNREIKSSIDPDFSIRYSNIRVC 75

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
             P   V    + + ++PH CR  D+TY   ++V++EY     +++T  E N + IG IP+
Sbjct: 76   HPREIVGKGQLPKPVSPHECRTRDLTYRGDVVVDVEYTSRDRSKRTCTETN-IKIGTIPV 134

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+SC C LYGK   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D  G+
Sbjct: 135  MLKSCCCNLYGKSREELIAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGD 194

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I A V S T    SK  +  +KG++ +L   F + IPI+V+++A+GMESDQ++ Q +G  
Sbjct: 195  IVAHVQSKTHYSISKCSVTFKKGRVVMLHRSFKEDIPIVVLLRALGMESDQQIAQHIGSS 254

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV---F 323
            P +  LL    E  A++++ TQE AL ++ G+ ++ TF    + ++ +      D    F
Sbjct: 255  PAFQKLLFGCFEHAASVNVKTQEDALHFI-GERRKETFWEMDDTQQRQIHKSKADSAADF 313

Query: 324  LANVPV---------HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            LANV +          + NFR K  YV  M+RRM+EA L+   +D++D+ GNKR E +G 
Sbjct: 314  LANVLLCHIREGEVQRDWNFRHKALYVCYMVRRMLEASLDSSLLDERDFYGNKRFETTGA 373

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNF 432
            L+ LLFEDL K     V+  +D +LSK   +  F++ Q +    + I  G+   LSTG +
Sbjct: 374  LMGLLFEDLLKQYNRVVKTAMDQLLSKKDTTKPFNIKQLMESKMEVIQNGMRVALSTGRW 433

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
            ++KRF M R+G+TQVL+RLS+I  +G MTR++  FEKSRK+SGPR+LQPSQWGM+CPCDT
Sbjct: 434  ELKRFNMSRQGITQVLSRLSYISCIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDT 493

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF--- 549
            PEGE+CGLVKN A+++ VT D ++  + +  Y LGVE+++ ++      PN FL  F   
Sbjct: 494  PEGESCGLVKNFAILSQVTLDMDDTFVRAAAYNLGVEEVDAIT------PNEFLTYFTVF 547

Query: 550  -NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG ++G HR P      +R LRR+G++   VS+ VN+ Q+ V I  DGGR+ R  ++  
Sbjct: 548  LNGTLIGIHRYPNRLCRGVRSLRRSGRLHPHVSIAVNDHQKSVQIGCDGGRIVRLYMVVR 607

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +   H+  L  G  S +DFL EGL+E++DVNE N+ LIA+Y  D    TTH+EIE
Sbjct: 608  NGEPAVTSKHLDNLSSGRCSINDFLAEGLVEFIDVNEANDCLIAVYPKDIEKYTTHLEIE 667

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            P ++LGV+AG+IP+PHHNQS RNT+Q AMGKQA+G I +NQ  RMD++L L +YPQRPL 
Sbjct: 668  PLSLLGVVAGIIPFPHHNQSARNTFQSAMGKQALGTIGYNQYIRMDTVLMLGIYPQRPLC 727

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+ + L  Y+ LGAG NA V VMSYSGYDIEDA V N+ SLDRG+GRCIV++K+    +
Sbjct: 728  RTKAMNLTNYESLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCIVLRKHEVELE 787

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            +  +   D +L P  +  G  R             L+ DG+A+ G I++  D+ +NK +P
Sbjct: 788  RLPHGEYDIVL-PADSNAGKYRA------------LNSDGIASKGAIVRQFDILVNKYTP 834

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC----SDKNGDL--CIKFLI 902
            + +    + P        R     YK P  +  VVD V +     SD++ D+   IK + 
Sbjct: 835  VPS----LEP--------RPNPLVYKYP--QPAVVDHVVISPPGDSDRSMDVEQKIKVVT 880

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R  R PE GDKFSSRHGQKGV G I    + PF+E+GICPD+IMNPHGFPSRMTVGK++E
Sbjct: 881  REVRIPEPGDKFSSRHGQKGVVGLITDGVNMPFNEQGICPDMIMNPHGFPSRMTVGKLLE 940

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+  K     GRF  G+AFG      D  E + E L++HGF+Y+GKD+ YSGITG  L  
Sbjct: 941  LVSSKVSALTGRFGDGTAFG-----GDKAEDMGEELLRHGFNYHGKDVFYSGITGEKLHG 995

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            ++F GPIYYQ+LKHMV DK+HAR +GPR MLTRQPTEGR+RNGGLRVGEMERDC++ YGA
Sbjct: 996  HVFFGPIYYQRLKHMVTDKVHARATGPRSMLTRQPTEGRSRNGGLRVGEMERDCMVGYGA 1055

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L++ERL+VSSD F V +CR CG LGY      +G CS C   +++S + +PYA KLL+
Sbjct: 1056 SKLLYERLLVSSDLFTVDICRSCGFLGY------SGYCSYCSTRNSVSRVNVPYAFKLLL 1109

Query: 1143 QELQSMNIVPRLKL 1156
            QELQ M I  RL L
Sbjct: 1110 QELQGMGISARLTL 1123


>gi|256081823|ref|XP_002577167.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043957|emb|CCD81503.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1126

 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1149 (46%), Positives = 757/1149 (65%), Gaps = 56/1149 (4%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            K  L+P FL  +GLVK H+DSFN+F+ T I+ IVRAN R VS  + + +L + D+ I  P
Sbjct: 4    KHYLVPSFLASKGLVKLHIDSFNHFIQTEIKNIVRANSR-VSVPEANWWLEYNDIYIKPP 62

Query: 91   SMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLR 149
            ++   GV + ++ PH CRL D+TYA  ILV++ +V+    +   + K  V+IGR+PIML+
Sbjct: 63   TVNDGGVVASRVTPHDCRLRDLTYAGEILVDVTFVR----QNEVVSKKGVLIGRMPIMLK 118

Query: 150  SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA 209
            S  CVL GK  +EL RL ECPLDPGGYFII GTEKV+L+QEQ SKNR+II+ D K  +  
Sbjct: 119  SSICVLNGKSPSELMRLKECPLDPGGYFIIGGTEKVVLMQEQTSKNRLIIEEDSKRGLVC 178

Query: 210  SVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY 269
            SVTSS+   KSKT I  +  K YL  N F+  +PI ++ KAM + SDQE++Q++G +   
Sbjct: 179  SVTSSSAQTKSKTNIVTKDDKFYLSHNSFIVDVPIAILFKAMNITSDQELLQLIGTEESV 238

Query: 270  SALLLPSIEECANLDIYTQEKALEYLEGKVK----RSTFGSPPNDREGRAFSILRDVFLA 325
             A  +PS++ C   +I+T   A  +L  +++    R+ FG+   D        LRD+ + 
Sbjct: 239  WANFVPSLKLCLEYNIHTCLDACNWLHSRLRQPRYRTAFGA---DIILEIQRFLRDIIIT 295

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            +V +   NF P+ F++  M+R ++ A   +  ++D+D+ GNKR+EL+G L++LLFED+FK
Sbjct: 296  HVEMEKLNFAPRAFFLGQMVRYLILANEKRIPVNDRDFYGNKRIELAGSLLALLFEDVFK 355

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMT 445
            T   ++  TV  I +K  R + FD+S+ I    IT  L R +S+GN+ +KRF+M R G+T
Sbjct: 356  TFNEDLWLTVSKIDTK-RRCTPFDISRHIKTWMITEQLNRAISSGNWIIKRFRMMRHGVT 414

Query: 446  QVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
            QV++RLS++  LGHMTR++ QFEK+RKVSGPR++  SQWG++CP DTPEGEACGLVKN+A
Sbjct: 415  QVVSRLSYVAALGHMTRMTSQFEKTRKVSGPRSIHASQWGLICPSDTPEGEACGLVKNVA 474

Query: 506  LMTHVTTDEEEGPLISLC---YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            LM HVT + ++  LI L    Y   +  +        +  N +++  NG  +G  + P  
Sbjct: 475  LMCHVTVEVDDAHLIELISNYYTFPLYQMR-------YAKNEYVIYVNGKPIGFTQHPGK 527

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKEL 622
               ++R LRR+G+I  FVSV++ +  +CV++ SDGGR CRP +I   G   + E  +++L
Sbjct: 528  LCVLIRGLRRSGRIHGFVSVYIKQAYQCVHVVSDGGRFCRPYIILCNGRPLVTESVLQDL 587

Query: 623  LDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT--THIEIEPFTILGVIAGLI 680
               V ++DD L++GL+EYLDVNE N+ L+A+ E   T     TH+EI+P TILGV+AGLI
Sbjct: 588  RHNVLNWDDLLKKGLVEYLDVNELNDCLVAMDESCLTDGNHYTHMEIDPATILGVVAGLI 647

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HNQSPRNTYQCAMGKQA+G +A NQ  R D+L   +VYPQ+PL+ ++TI+++ +D+
Sbjct: 648  PYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTIQMMHFDE 707

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA+MSYSGYD+EDA+V+N++S+DRGF R  V ++     + + N+  DR++ 
Sbjct: 708  LPAGQNAVVAIMSYSGYDVEDALVINQASIDRGFARACVYRRSGVHLKMHENAVYDRLM- 766

Query: 801  PDRTGPGAER-MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
                GP  ER   V+   +    +L  DG+A  G  +    + INKE P+ +  +++   
Sbjct: 767  ----GPSIERETGVLRRGD---EVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNA 819

Query: 860  G---------QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
            G         +  + ++     YKG   E   V++V   + +     +K L+R TRRPE+
Sbjct: 820  GSLSLNVNTPENATEFKRCPVDYKGI--EPSYVEKVMFSTSEGNQAVVKILLRQTRRPEV 877

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGV G IV+QED PFS  G+ PD+IMNPHGFPSRMTVGK++E+LG KAG 
Sbjct: 878  GDKFSSRHGQKGVVGLIVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGA 937

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+   GSAF       D  E +S+ L+ HG+ Y GK+++YSG+TG PL+A+I+ GP+Y
Sbjct: 938  IEGKIRDGSAFS-----GDPAEVLSQVLIDHGYHYLGKEILYSGVTGAPLEAFIYFGPVY 992

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+LKHMV+DK+HAR  GP   LTRQPTEGR+R GGLRVGEMERDC IAYG S L+ ERL
Sbjct: 993  YQRLKHMVMDKVHARSRGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGTSQLLLERL 1052

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            ++SSD ++  VC  CGLL           C  C++   + S+++PYACKLL QEL  M I
Sbjct: 1053 LLSSDAYDACVCEKCGLLA-----TSPNWCQYCRSSRQVVSVRMPYACKLLFQELMCMRI 1107

Query: 1151 VPRLKLAEA 1159
            +PRL+L  A
Sbjct: 1108 LPRLRLRAA 1116


>gi|115503929|ref|XP_001218757.1| DNA-directed RNA polymerase III [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
 gi|83642239|emb|CAJ15945.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
 gi|261325981|emb|CBH08807.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1129

 Score = 1030 bits (2663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1154 (46%), Positives = 740/1154 (64%), Gaps = 74/1154 (6%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K  LLP  + ++GL+  H+ SF++ +N  + +I+   +N  I S IDP   +R+  +R+ 
Sbjct: 16   KLALLPALINMKGLLNHHVASFDHLINVELGRILLNESNREIKSSIDPDFSIRYSGIRVC 75

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            +P   V    + + ++PH CR  D+TY   I+V++EY     +++   E N + IG IPI
Sbjct: 76   RPREIVGKGQLPKPVSPHECRTRDLTYRGDIVVDVEYTSRDRSKRICTETN-IKIGTIPI 134

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C LYGK   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D  G+
Sbjct: 135  MLKSSSCNLYGKGREELIAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGD 194

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I A V S T    SK  +   KG++ ++   F + IPI+VV+KA+GMESDQ++ Q +G  
Sbjct: 195  IVAHVQSKTHYSISKCSVTFRKGRIVMVHRSFKEDIPIVVVLKALGMESDQQIAQHIGVS 254

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV---F 323
            P + ++L    E  A+L++ TQ+ AL ++ G+ ++ TF      ++        D    F
Sbjct: 255  PAFQSVLFACFEHAASLNVKTQDDALHFI-GERRKETFWEMDETQQRHVQKSKADSAAEF 313

Query: 324  LANVPV---------HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            LANV +          + NFR K  YV  M+RRMVEA ++   +D++D+ GNKR E +G 
Sbjct: 314  LANVLLCHIREGEVQRDWNFRHKALYVCFMVRRMVEASVDSSLLDERDFYGNKRFETTGT 373

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNF 432
            L+ LLFEDL K     V+  +D +LSK   +  F+L Q +    + I  G+   LS+G +
Sbjct: 374  LMGLLFEDLLKQYNRVVKTAMDQLLSKKDTTKPFNLKQLMESKMEVIQNGMRVALSSGRW 433

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
            ++KRF M R+G+TQVL+RLS+I  +G MTR++  FEKSRK+SGPR+LQPSQWGM+CPCDT
Sbjct: 434  ELKRFNMSRQGITQVLSRLSYISCIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDT 493

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL----VI 548
            PEGE+CGLVKN A+++ VT D ++  + +  Y LGVE+++ +S      PN FL    V 
Sbjct: 494  PEGESCGLVKNFAILSQVTLDMDDSFVRAAAYNLGVEEVDCIS------PNEFLKYYTVF 547

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG ++G HR P      +R LRR+G++   VS+ +N++Q+ V I  DGGR+ R  ++  
Sbjct: 548  LNGTLMGIHRYPSRLCRGVRTLRRSGRLHPHVSIAINDRQKSVQIGCDGGRIVRLYIVVR 607

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +   H+  L  G  S +DFL EGL+E++DVNE N+ LIA+Y  D    TTH+EIE
Sbjct: 608  DGKPAVTSQHLDNLSSGKCSINDFLAEGLVEFIDVNEANDCLIAVYPKDIEQYTTHLEIE 667

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            P ++LGV+AG+IP+PHHNQS RNT+Q AMGKQA+G IA+NQ  RMD++L L  YPQRPL 
Sbjct: 668  PLSLLGVVAGIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRMDTVLMLGAYPQRPLC 727

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             T+ + L  Y+ LGAG NA V VMSYSGYDIEDA V N+SSLDRG+GRC+V++K+    +
Sbjct: 728  RTKAMNLTNYEILGAGINAMVCVMSYSGYDIEDAQVYNRSSLDRGYGRCVVLRKHEVELE 787

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            +  N   D IL  D          V  HS      L+ DG+A+ G +++  D+ +NK +P
Sbjct: 788  RLPNGEYDIILPADSN--------VGRHS-----ALNSDGIASKGAVVRQFDILVNKYTP 834

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC----SDKNGDL--CIKFLI 902
            + +    M P        R     YK P  +  VVD V +     SD++ D+   IK + 
Sbjct: 835  VPS----MEP--------RPNPLVYKYP--QPAVVDHVVISPPGDSDRSMDVEQKIKVVT 880

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R  R PE GDKFSSRHGQKGV G I    + PF+E+GICPD+IMNPHGFPSRMTVGK++E
Sbjct: 881  REVRGPEPGDKFSSRHGQKGVVGLITDGVNMPFNEQGICPDMIMNPHGFPSRMTVGKLLE 940

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+  K     G+F  G+AFG      D  E + E L++HG++Y+GKD+ YSG+TG  L+A
Sbjct: 941  LVSSKVSALTGKFGDGTAFG-----GDKAEDLGEELIRHGYNYHGKDIFYSGVTGEMLRA 995

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGA
Sbjct: 996  YVFFGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGA 1055

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERL+VSSD F + +CR CG +GY       G CS C   + +S + +PYA KLL+
Sbjct: 1056 SNLLNERLLVSSDLFTIDICRCCGFMGY------NGYCSYCNAKNTVSRVNVPYAFKLLL 1109

Query: 1143 QELQSMNIVPRLKL 1156
            QELQ M I  RL L
Sbjct: 1110 QELQGMGISTRLSL 1123


>gi|224587859|gb|ACN58727.1| DNA-directed RNA polymerase III subunit RPC2 [Salmo salar]
          Length = 814

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/832 (60%), Positives = 623/832 (74%), Gaps = 22/832 (2%)

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            +VPV   NFR KC Y+AVM+RR++ A   ++ +DD+DY GNKRLEL+GQL+SLLFEDLFK
Sbjct: 1    HVPVKEFNFRAKCIYLAVMVRRVILAQ-GENKVDDRDYYGNKRLELAGQLLSLLFEDLFK 59

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMT 445
               SE++K  D I+ K  R+++FD+ + + +D IT G+   +STGN+ +KRFKM R+G+T
Sbjct: 60   KFNSELKKISDQIIPK-QRAAQFDIVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVT 118

Query: 446  QVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
            QVL+RLSFI  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLA
Sbjct: 119  QVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLA 178

Query: 506  LMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFAD 565
            LMTH+TTD E+GP++ L + LGVED+ LL GEEL  P+ FLV  NG ILG  R  +    
Sbjct: 179  LMTHITTDMEDGPIVKLAFNLGVEDVNLLCGEELSYPSVFLVFLNGNILGVIRDHQRLVY 238

Query: 566  VMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
              R +RRAG I EFVS+  N   RCVY++SDGGR+CRP +I  KG   +K  H++EL  G
Sbjct: 239  TFRLMRRAGFINEFVSISTNLTDRCVYVSSDGGRLCRPYIIVKKGQPMVKNKHIEELTQG 298

Query: 626  VRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHH 685
             R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV AGLIPYPHH
Sbjct: 299  YRTFEDFLHESLVEYLDVNEENDCQIALYEHMINKDTTHLEIEPFTLLGVCAGLIPYPHH 358

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ TRTIEL+ ++KL AGQ
Sbjct: 359  NQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLGYPQKPMVKTRTIELIDFEKLPAGQ 418

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NATVAVMSYSGYDIEDA+++NK+SLDRGFGRC+V K      ++Y N T D+++ P    
Sbjct: 419  NATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGP--ML 476

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
              A R  +  HS     ILD DG+  PGE ++   V +NK  P  T+  +         +
Sbjct: 477  DAATRKPIWRHS-----ILDADGICCPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQ 531

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            YR    +YKG       +++V + S+ +    IK L+R TRRPE+GDKFSSRHGQKGVCG
Sbjct: 532  YRDVPVSYKG--STDSYIEKVMISSNADDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCG 589

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
             IV QED PF + GICPD+IMNPHG+PSRMTVGK+IELL GKAGV  GRFHYG+AFG   
Sbjct: 590  LIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVMDGRFHYGTAFG--- 646

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                 V+ + E L+++G++Y GKD + SGITG P++AYI+ GP+YYQKLKHMVLDKMHAR
Sbjct: 647  --GSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPIEAYIYFGPVYYQKLKHMVLDKMHAR 704

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC  C
Sbjct: 705  ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC 764

Query: 1106 GLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            GLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKLA
Sbjct: 765  GLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLA 810


>gi|339898015|ref|XP_003392438.1| putative DNA-directed RNA polymerase polypeptide [Leishmania infantum
            JPCM5]
 gi|321399356|emb|CBZ08599.1| putative DNA-directed RNA polymerase polypeptide [Leishmania infantum
            JPCM5]
          Length = 1132

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1154 (46%), Positives = 734/1154 (63%), Gaps = 72/1154 (6%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K ++LP  + +RG++  H+ SF++ +   +++I+   +N  I S +DP   +R++++RI 
Sbjct: 19   KLEMLPALMAMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIRIC 78

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            +P   V    + + + P  CR+ DMTY   ++V+++Y     +    +EK DV IG IPI
Sbjct: 79   RPQEIVGKGHIPKLVTPQECRVRDMTYRGDMIVDVQYTSRDRSRAMLVEK-DVKIGTIPI 137

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C LY K   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D+ GN
Sbjct: 138  MLKSKCCNLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGN 197

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I+A V S T    SK  +  +KG + L    F + IPI+VV+KA+G+E+DQ + Q +G  
Sbjct: 198  ISAHVQSKTHYSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTS 257

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE--GRAFSILRDVFL 324
            P +  +L P  EE   L++ TQ  AL+Y+  K K + + +    +    R+ +     FL
Sbjct: 258  PEFQEILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQQRQVNRSKADKAAEFL 317

Query: 325  ANVPV---------HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
            ANV +          + NFR K FYV  M+R M+EA  +   +D++D+ GNKR E +G L
Sbjct: 318  ANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFYGNKRFETTGTL 377

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNFD 433
            ++LLFEDL K     V+  +D  LSK   +  F++ Q +    + I  G+   +S+G +D
Sbjct: 378  MALLFEDLLKQFNRVVKTAMDQQLSKKDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWD 437

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRF M+R+G+TQVL+RLS+I +LG MTR++  FEK+RKVSGPR+LQPSQWGM+CPCDTP
Sbjct: 438  LKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTP 497

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL----VIF 549
            EGE+CGLVKN A ++ VT D  +  + +  + LGVE+++ ++      P  FL    V  
Sbjct: 498  EGESCGLVKNFATLSQVTLDLNDSYVRAAAHALGVEEIDTVT------PTDFLHYYTVFL 551

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ++G HR P      +R LRR+G++   VS+    +QR V I SDGGR+ R L+I   
Sbjct: 552  NGTLIGIHRYPNRLCAGIRALRRSGRLHPHVSISTQPRQRTVQIGSDGGRIVRLLIIVRD 611

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G   +   H+  L D + + +DFL EGLIEY+DVNE N+ LIA+Y  D  P TTH+E+EP
Sbjct: 612  GKPAVTSAHLDRLRDRLCTHNDFLAEGLIEYVDVNESNDCLIAVYPADIGPYTTHLEVEP 671

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             ++LGV+AG+IPYPHHNQS RNT+Q AMGKQA+G +A NQ  R D++L L  YPQRPL  
Sbjct: 672  LSLLGVVAGIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCR 731

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+ + L  Y+KLGAG NA V VMSYSGYDIEDA V NKSSLDRG+GRC+V++K+    +K
Sbjct: 732  TKAMSLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEK 791

Query: 790  YANSTSDRILRPDR-TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            YA    D IL P++ +G G  +             L+ DG+A+ G +++  DV +NK +P
Sbjct: 792  YAGGEFDVILPPEKNSGTGKFKA------------LNPDGVASKGALVQQYDVLVNKFTP 839

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC------IKFLI 902
            +                 R A   YK P  +  VVD V +    + D        IK + 
Sbjct: 840  V------------AGGDPRPAPLVYKYP--QPAVVDHVIISPPGDYDRSLDVDQKIKVIT 885

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R  R PE GDKFSSRHGQKGV G IV   D PF+ERG+CPD+IMNPHGFPSRMTVGK++E
Sbjct: 886  REVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLE 945

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+  KA    G    G+AFG      D+ +SIS+ L+  G++Y+GKD+ YSGITG  +Q 
Sbjct: 946  LVCSKAAALRGSMGDGTAFG-----GDSADSISQQLLSFGYNYHGKDVFYSGITGDLMQG 1000

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGA
Sbjct: 1001 YVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGA 1060

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERL++SSD F   +C VCG LGY N       C+ CK     S + +PYA KLLI
Sbjct: 1061 SNLLNERLLISSDMFTADICHVCGNLGYNNR------CTYCKTKGTTSKVNMPYAFKLLI 1114

Query: 1143 QELQSMNIVPRLKL 1156
            QELQ M +  RL +
Sbjct: 1115 QELQGMGVSLRLTM 1128


>gi|156087649|ref|XP_001611231.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
 gi|154798485|gb|EDO07663.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
          Length = 1171

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/1189 (46%), Positives = 766/1189 (64%), Gaps = 91/1189 (7%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGI 74
            D  + AAPV  + DK+++LP ++ +RG+ +QH++S+N FV   I++IV A  N  + S  
Sbjct: 25   DIAREAAPVGDIKDKWKILPCYMGMRGIARQHINSYNNFVLREIKEIVNAPSNKMLKSDA 84

Query: 75   DPSIFLRFKDVRIGQPSMTVDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
                ++ F D+ +G+P+M+ +      L P +CR+ D+TY+AP+ V++EY  G       
Sbjct: 85   CKKFYIEFIDINVGEPTMSENNNKPILLTPQLCRMRDITYSAPMYVDVEYYNGEGVASKR 144

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGK-------DEAELA-RLGECPLDPGGYFIIKGTEKV 185
            +E     IGR+P+MLRSC C L G        D  EL+ RLGECP DPGGYFIIKG EKV
Sbjct: 145  VE-----IGRLPVMLRSCVCALSGGMRANGNVDNFELSSRLGECPYDPGGYFIIKGVEKV 199

Query: 186  LLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIM 245
            +L+QEQLSK RVI++TD K NI A+VTS+T   KS+T +  +  K+Y+  N F   +P+ 
Sbjct: 200  ILMQEQLSKCRVIVETDVKKNICATVTSATAESKSRTAVVYKNQKLYVRHNSFTDDVPLC 259

Query: 246  VVMKAMGMESDQEVVQMVGRDPRYSAL-----LLPSIEECANLDIYTQEKALEYLEGKVK 300
            +++KAMG+ +D+E+ Q++G       L      + SIE+  N  I T+  AL Y+  KV+
Sbjct: 260  IILKAMGVTTDEEIAQLIGTAGAREYLPTGGDYILSIEDLYNEGINTRMDALLYVGRKVR 319

Query: 301  ----RSTFGSPPNDREGRA--------FSILRDVFLANVPVHN-NNFRPKCFYVAVMLRR 347
                   F +   +R  +           IL  V L+++P+ N  +F  K   + +M RR
Sbjct: 320  PRPLAKGFFTSSKERLPKTNQNLIEDTHDILTRVLLSHIPMRNCRDFSGKIKSLCLMARR 379

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP----- 402
            ++     K+ MDDKD+ GNKRLEL+GQL+S+LFEDLFK  + +++K +D  L++      
Sbjct: 380  VLSVASGKEPMDDKDHYGNKRLELAGQLISILFEDLFKAFLGQLKKQIDATLTRHYEIVS 439

Query: 403  -----SRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTL 457
                  ++   D    +  D IT G++ T+STGN+++KRF++ R G++Q+L+RLS+I  L
Sbjct: 440  NCHGGEQAKYPDCLVSLPTDIITRGMQATISTGNWNIKRFRIERSGVSQILSRLSYISCL 499

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
            G MT+ + QFEK RKVS PRALQPSQ G++CPCDTPEGE+CGLVKNL+LM HVTTD +  
Sbjct: 500  GMMTKTNSQFEKGRKVSKPRALQPSQLGLICPCDTPEGESCGLVKNLSLMNHVTTDGDIE 559

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKI 576
             L+ L Y LGVE  + LS  +  + +  + +F NG+I+G H+  K     +  LRR GKI
Sbjct: 560  RLVELLYWLGVESADALSARDCFDDDRNVTVFLNGIIIGVHQNGKQLIKDVVALRRRGKI 619

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREG 636
              FVSVF N +QR V+I+SDGGR+CRPL++ + G   +    + +L++G          G
Sbjct: 620  SAFVSVFENYQQREVHISSDGGRLCRPLIVVENGKPLLTPKVLSQLVEGQIPLSKLFASG 679

Query: 637  LIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA 696
            ++E++DVNEENN LI + E D TP TTH+EI P ++LGV+AGLIP+P+HNQSPRNTYQCA
Sbjct: 680  VLEWIDVNEENNTLIVMRESDITPKTTHLEISPMSMLGVVAGLIPFPNHNQSPRNTYQCA 739

Query: 697  MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
            MGKQ++G+I +NQL R D++L+L+VYPQRPL+TT+ I+LV +DKL AGQN  VAVMSY G
Sbjct: 740  MGKQSIGSIGYNQLNRCDTILHLMVYPQRPLVTTKAIQLVNFDKLPAGQNVIVAVMSYQG 799

Query: 757  YDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHH 816
            Y+IEDA+V+NK+S +RGF RC  +++ T   +K  ++        +R G    R Q+ + 
Sbjct: 800  YEIEDAVVINKASSERGFSRCYSLRRVTVEIEKLNHAA-------ERPGGLNNRPQITN- 851

Query: 817  SNLLLLILDD---DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ---TDSRYRSAR 870
                +  +DD   D +   G+ +K +D  + K +         + TGQ   TD +Y+  +
Sbjct: 852  ----VTPVDDLTGDSVIGVGQKVKKDDTLLKKLT--------QTSTGQIKVTDIKYQFNQ 899

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
              Y         VDRV   +     +  K ++R  R PE+GDK+SSRHGQKGV G I  Q
Sbjct: 900  PAY---------VDRVMCITTIAESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQ 950

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            E+ PFSE G  PDLIMNPHGFPSRMTVGKM+EL+  KA V  G F  G+ F      AD+
Sbjct: 951  ENLPFSEHGWVPDLIMNPHGFPSRMTVGKMLELVAAKAAVLNGIFEDGTPF-----EADS 1005

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            + +I  +L+K GF   GK+++YSGITG PL+  IF GP+YYQKLKHMV DK+HAR  GPR
Sbjct: 1006 LPAIERSLIKKGFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVSDKIHARAVGPR 1065

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
              LTRQPTEGR+++GGLR+GEMERDCLIAYGAS L+ ERLM+SSD F++ VC  CG +GY
Sbjct: 1066 QSLTRQPTEGRSKDGGLRLGEMERDCLIAYGASGLLVERLMLSSDVFQMDVCHQCGFIGY 1125

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
                   G C+ CK     +++ +PYACKLL QELQ+MNI P + L E+
Sbjct: 1126 ------DGWCAYCKQRGQTATVAIPYACKLLFQELQAMNIRPNVILKES 1168


>gi|154336907|ref|XP_001564689.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061724|emb|CAM38755.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1125

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1153 (46%), Positives = 732/1153 (63%), Gaps = 70/1153 (6%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K ++LP  + +RG++  H+ SF++ +   +++I+   +N  I S +DP   +R++++R+ 
Sbjct: 12   KLEMLPALMAMRGILNHHIASFDHLIEVELQRILLNESNVEIKSVVDPDFLIRYQNIRVC 71

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            +P   V    + + + P  CR+ DMTY   ++V+++Y     +    +EK DV IG IPI
Sbjct: 72   RPQEIVGKGHIPKFVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEK-DVKIGTIPI 130

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C LY K   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D+ GN
Sbjct: 131  MLKSKCCNLYRKTREELVSMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGN 190

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I+A V S T    SK  +  +KG + L    F + IPI+VV+KA+G+E+DQ + Q +G  
Sbjct: 191  ISAHVQSKTHYSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTS 250

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE--GRAFSILRDVFL 324
            P +  +L P  EE   L+I+TQ  AL+Y+  K K + +      +    R+ +     FL
Sbjct: 251  PAFQKILFPCFEEARGLNIFTQNDALQYIGEKRKETVWEVEETQQRQVNRSKADKAAEFL 310

Query: 325  ANVPV---------HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
            ANV +          + NFR K FYV  M+R M+EA  +   +D++D+ GNKR E +G L
Sbjct: 311  ANVLLCHIRESQMQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFYGNKRFETTGTL 370

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNFD 433
            ++LLFEDL K     V+  +D  LSK   +  F++ Q +    + I  G+   +S+G +D
Sbjct: 371  MALLFEDLLKQFNRVVKTAMDQQLSKRDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWD 430

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRF M+R+G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGM+CPCDTP
Sbjct: 431  LKRFNMNRQGITQVLSRLSYIACLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTP 490

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL----VIF 549
            EGE+CGLVKN A ++ VT D  +  + +  + LGVE+++ ++      P  FL    V  
Sbjct: 491  EGESCGLVKNFATLSQVTLDMNDHYVRASAHSLGVEEIDTVT------PTDFLQYYSVFL 544

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ++G HR P      +R LRR+G++   VS+ +  +QR V I SDGGR+ R L+I   
Sbjct: 545  NGTLIGIHRYPNRLCAGIRALRRSGRLHPHVSISMQPRQRTVQIGSDGGRIVRLLIIVRG 604

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G   +   H+  L D + + +DFL EGLIEY+DVNE N+ LIA+Y  D  P TTH+E+EP
Sbjct: 605  GKPAVTSAHLDRLRDRLCTHNDFLAEGLIEYVDVNESNDCLIAVYPADIGPYTTHLEVEP 664

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             ++LGV+AG+IPYPHHNQS RNT+Q AMGKQA+G +A NQ  R D++L L  YPQRPL  
Sbjct: 665  LSLLGVVAGIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCR 724

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            TR + L  Y+KLGAG NA V VMSYSGYDIEDA V NKSSLDRG+GRC+V++K+    +K
Sbjct: 725  TRAMSLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEK 784

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
            YA    D IL P++   G+ + +           L+ DG+A+ G  ++  DV +NK +P+
Sbjct: 785  YAGGEFDVILPPEKNS-GSGKFKA----------LNPDGVASKGAFVQQYDVLVNKFTPV 833

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC------IKFLIR 903
                             R A   YK P  +  VVD V +    + D        IK + R
Sbjct: 834  ------------AGGDPRPAPLVYKYP--QLAVVDHVIISPPGDYDRSLDVDQKIKVITR 879

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              R PE GDKFSSRHGQKGV G IV   D PF+ERG+CPD+IMNPHGFPSRMTVGK++EL
Sbjct: 880  EVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLEL 939

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            +  KA    G    G+AFG      D+ +SIS  L+  G++Y+GKD+ YSGITG  +Q Y
Sbjct: 940  VCSKAAALRGSMGDGTAFG-----GDSADSISRQLLSFGYNYHGKDVFYSGITGELMQGY 994

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGAS
Sbjct: 995  VFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGAS 1054

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERL++SSD F   +C VCG LGY N       C+ CK     S + +PYA KLLIQ
Sbjct: 1055 SLLNERLLISSDLFTADICHVCGNLGYNNR------CTYCKTKGTTSKVNMPYAFKLLIQ 1108

Query: 1144 ELQSMNIVPRLKL 1156
            ELQ M +  RL +
Sbjct: 1109 ELQGMGVSLRLTM 1121


>gi|401421150|ref|XP_003875064.1| DNA-directed RNA polymerase polypeptide,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322491300|emb|CBZ26568.1| DNA-directed RNA polymerase polypeptide,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1132

 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1154 (46%), Positives = 735/1154 (63%), Gaps = 72/1154 (6%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K ++LP  + +RG++  H+ SF++ +   +++I+   +N  I S +DP   +R++++RI 
Sbjct: 19   KLEMLPALMGMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIRIC 78

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            +P   V    + + + P  CR+ DMTY   ++V+++Y     +    +EK DV IG IPI
Sbjct: 79   RPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEK-DVKIGTIPI 137

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C LY K   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D+ G+
Sbjct: 138  MLKSKCCNLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGS 197

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I+A V S T    SK  +  +KG + L    F + IPI+VV+KA+G+E+DQ + Q +G  
Sbjct: 198  ISAHVQSKTHYSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTS 257

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE--GRAFSILRDVFL 324
            P + A+L P  EE   L++ TQ  AL+Y+  K K + + +    +    R+ +     FL
Sbjct: 258  PEFQAILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQQRQVNRSKADKAAEFL 317

Query: 325  ANVPV---------HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
            ANV +          + NFR K FYV  M+R M+EA  +   +D++D+ GNKR E +G L
Sbjct: 318  ANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFYGNKRFETTGTL 377

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNFD 433
            ++LLFEDL K     V+  +D  LSK   +  F++ Q +    + I  G+   +S+G +D
Sbjct: 378  MALLFEDLLKQFNRVVKTAMDQQLSKKDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWD 437

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRF M+R+G+TQVL+RLS+I +LG MTR++  FEK+RKVSGPR+LQPSQWGM+CPCDTP
Sbjct: 438  LKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTP 497

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL----VIF 549
            EGE+CGLVKN A ++ VT D  +  + +  + LGVE+++ ++      P  FL    V  
Sbjct: 498  EGESCGLVKNFATLSQVTLDLNDNYVRAAAHSLGVEEIDTVT------PTDFLHYYTVFL 551

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ++G HR P      +R LRR+G++   VS+    +QR V I SDGGR+ R L+I   
Sbjct: 552  NGTLIGIHRYPNRLCAGIRALRRSGRLHPHVSISTQPRQRTVQIGSDGGRIVRLLIIVRD 611

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G   +   H+  L D + + +DFL EGLIEY+DVNE N+ LIA+Y  D  P TTH+E+EP
Sbjct: 612  GKPAVTSAHLDRLRDRLCTHNDFLAEGLIEYVDVNESNDCLIAVYPADIRPYTTHLEVEP 671

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             ++LGV+AG+IPYPHHNQS RNT+Q AMGKQA+G +A NQ  R D++L L  YPQRPL  
Sbjct: 672  LSLLGVVAGIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCR 731

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+ + L  Y++LGAG NA V VMSYSGYDIEDA V NKSSLDRG+GRC+V++K+    +K
Sbjct: 732  TKAMSLTHYERLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEK 791

Query: 790  YANSTSDRILRPDR-TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            YA    D IL P++ +G G  +             L+ DG+A+ G +++  DV +NK +P
Sbjct: 792  YAGGEFDVILPPEKNSGTGKFKA------------LNPDGVASKGVLVQQYDVLVNKFTP 839

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC------IKFLI 902
            +                 R A   YK P  +  VVD V +    + D        +K + 
Sbjct: 840  V------------AGGDPRPAPLVYKYP--QPAVVDHVIISPPGDYDRSLDVDQKVKVVT 885

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R  R PE GDKFSSRHGQKGV G IV   D PF+ERG+CPD+IMNPHGFPSRMTVGK++E
Sbjct: 886  REVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLE 945

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+  KA    G    G+AFG      D+ +SIS+ L+  G++Y+GKD+ YSGITG  +Q 
Sbjct: 946  LVCSKAAALRGSMGDGTAFG-----GDSADSISQQLLSFGYNYHGKDVFYSGITGELMQG 1000

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGA
Sbjct: 1001 YVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGA 1060

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERL++SSD F   +C VCG LGY N       C+ CK     S + +PYA KLLI
Sbjct: 1061 SNLLNERLLISSDMFTADICHVCGNLGYNNR------CTYCKTKGTTSKVNMPYAFKLLI 1114

Query: 1143 QELQSMNIVPRLKL 1156
            QELQ M +  RL +
Sbjct: 1115 QELQGMGVSLRLTM 1128


>gi|157868405|ref|XP_001682755.1| putative DNA-directed RNA polymerase polypeptide [Leishmania major
            strain Friedlin]
 gi|68126211|emb|CAJ03500.1| putative DNA-directed RNA polymerase polypeptide [Leishmania major
            strain Friedlin]
          Length = 1132

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1154 (46%), Positives = 732/1154 (63%), Gaps = 72/1154 (6%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K ++LP  + +RG++  H+ SF++ +   +++I+   +N  I S +DP   +R++++RI 
Sbjct: 19   KLEMLPALMGMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIRIC 78

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            +P   V    + + + P  CR+ DMTY   ++V+++Y     +    +EK DV IG IPI
Sbjct: 79   RPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEK-DVKIGTIPI 137

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C LY K   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D+ GN
Sbjct: 138  MLKSKCCNLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGN 197

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I+A V S T    SK  +  +KG + L    F + IPI+VV+KA+G+E+DQ + Q +G  
Sbjct: 198  ISAHVQSKTHYSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTL 257

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE--GRAFSILRDVFL 324
            P +  +L P  EE   L++ TQ  AL+Y+  K K + + +    +    R+ +     FL
Sbjct: 258  PEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQQRQVNRSKADKAAEFL 317

Query: 325  ANVPV---------HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
            ANV +          + NFR K FYV  M+R M+EA  +   +D++D+ GNKR E +G L
Sbjct: 318  ANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDTSLLDERDFYGNKRFETTGTL 377

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNFD 433
            ++LLFEDL K     V+  +D  LS+   +  F++ Q +    + I  G+   +S+G +D
Sbjct: 378  MALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWD 437

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRF M+R+G+TQVL+RLS+I +LG MTR++  FEK+RKVSGPR+LQPSQWGM+CPCDTP
Sbjct: 438  LKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTP 497

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL----VIF 549
            EGE+CGLVKN A ++ VT D  +  + +  + LGVE+++ ++      P  FL    V  
Sbjct: 498  EGESCGLVKNFATLSQVTLDLNDNYVRAAAHALGVEEIDTVT------PTDFLHYCTVFL 551

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ++G HR P      +R LRR+G++   VS+    +QR V I SDGGR+ R L+I   
Sbjct: 552  NGTLIGIHRYPNRLCAGIRTLRRSGRLHPHVSISTQPRQRTVQIGSDGGRIVRLLIIVRD 611

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G   +   H+  L D + + +DFL EGL EY+DVNE N+ LIA+Y  D  P TTH+E+EP
Sbjct: 612  GKPAVTSAHLDRLRDRLCTHNDFLAEGLTEYVDVNESNDCLIAVYPADIGPYTTHLEVEP 671

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             ++LGV+AG+IPYPHHNQS RNT+Q AMGKQA+G +A NQ  R D++L L  YPQRPL  
Sbjct: 672  LSLLGVVAGIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCR 731

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+ + L  Y+KLGAG NA V VMSYSGYDIEDA V NKSSLDRG+GRC+V++K+    +K
Sbjct: 732  TKAMSLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEK 791

Query: 790  YANSTSDRILRPDR-TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            YA    D IL P++ +G G  +             L+ DG+A  G +++  DV +NK +P
Sbjct: 792  YAGGEFDVILPPEKNSGTGKFKA------------LNPDGVAGKGALVQQYDVLVNKFTP 839

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC------IKFLI 902
            +                 R A   YK P  +  VVD V +    + D        IK + 
Sbjct: 840  V------------AGGDPRPAPLVYKYP--QPAVVDHVIISPPGDYDRSLDVDQKIKVVT 885

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R  R PE GDKFSSRHGQKGV G IV   D PF+ERG+CPD+IMNPHGFPSRMTVGK++E
Sbjct: 886  REVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLE 945

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
            L+  KA    G    G+AFG      ++ +SIS+ L+  G++Y+GKD+ YSGITG  +Q 
Sbjct: 946  LVCSKAAALRGSMGDGTAFG-----GESADSISQQLLSFGYNYHGKDVFYSGITGELMQG 1000

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
            Y+F GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGA
Sbjct: 1001 YVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGA 1060

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S L+ ERL++SSD F   +C VCG LGY N       C+ CK     S + +PYA KLLI
Sbjct: 1061 SNLLNERLLISSDMFTADICHVCGNLGYNNR------CTYCKTKGTTSKVNMPYAFKLLI 1114

Query: 1143 QELQSMNIVPRLKL 1156
            QELQ M +  RL +
Sbjct: 1115 QELQGMGVSLRLTM 1128


>gi|340052083|emb|CCC46353.1| DNA-directed RNA polymerase I, fragment, partial [Trypanosoma vivax
            Y486]
          Length = 1112

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1149 (45%), Positives = 735/1149 (63%), Gaps = 64/1149 (5%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K  LLP  + +RGL+  HL SF++ +N  +R+I+   +N  + S IDP   +R+ ++R+ 
Sbjct: 4    KLALLPALINMRGLLNHHLASFDHLINVELRRILLNESNREVKSSIDPDFSIRYTNIRVC 63

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            QP   V    + + ++PH CR  D+TY   I+V++EY     T++   +  D+ IG IPI
Sbjct: 64   QPREIVGKGQLPKPVSPHECRTRDLTYRGDIVVDVEYTSRDRTKRLCSD-TDIKIGTIPI 122

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C LYGK    L  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D   N
Sbjct: 123  MLKSSSCNLYGKSREGLIAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDSDN 182

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I A V S T    SK  +  +KG++ ++   F + IPI++++KA+GMESDQ++ Q +G  
Sbjct: 183  IVAHVQSKTHYSISKCSVTFKKGRVVMVHRSFKEDIPIVIMLKALGMESDQQIAQHIGTS 242

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS--PPNDREGRAFSILRDVFL 324
            P + ++L    E+ A+L + TQ+ AL+++  + K + + +    N    ++ +     FL
Sbjct: 243  PAFQSVLFACFEQAASLGVNTQDDALQFIGERRKETIWEAEDAQNRHMQKSKADSAADFL 302

Query: 325  ANVPV---------HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
            ANV +          + NFR K  YV  M+RRM+EA ++   +D++D+ GNKR E +G L
Sbjct: 303  ANVLLCHIREGEVQRDWNFRHKALYVCFMVRRMIEASIDSSLLDERDFYGNKRFETTGTL 362

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGNFD 433
            + LLFEDL K     V+  +D +LSK   +  F++ Q +    + I  G+   LS+G ++
Sbjct: 363  MGLLFEDLLKQYNRVVKTAMDQLLSKKDTTKPFNVKQLMESKMEVIQNGMRVALSSGRWE 422

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
            +KRF M R+G+TQVL+RLS+I  +G MTR++  FEKSRK+SGPR+LQPSQWGM+CPCDTP
Sbjct: 423  LKRFNMSRQGITQVLSRLSYISCIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDTP 482

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EGE+CGLVKN A+++ VT D ++  + +  + LGVE+++ ++  E      + V  NG++
Sbjct: 483  EGESCGLVKNFAILSQVTLDMDDSFVRAAAHNLGVEEVDCITPSEF--LGHYTVFLNGIL 540

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G HR P      +R LRR+G++   VS+ +N++Q+ V I  DGGR+ R  ++  +G   
Sbjct: 541  VGIHRYPSLLCRGVRALRRSGRLHPHVSISLNDRQKSVQIGCDGGRIVRLYIVVREGEPA 600

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            +   H+  L  G  + +DFL EGL+E++DVNE N+ LIA+Y  D    TTH+EIEP ++L
Sbjct: 601  VTLEHLDSLSAGRCTINDFLAEGLVEFIDVNEANDCLIAVYPKDIERHTTHLEIEPLSLL 660

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV+AG+IP+PHHNQS RNT+Q AMGKQA+G IA+NQ  RMD++L L  YPQRPL  ++ +
Sbjct: 661  GVVAGIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRSKAM 720

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
             L  Y+ LGAG NA V VMSYSGYDIEDA V N+ SLDRG+GRC+V++K+    Q+  N 
Sbjct: 721  SLTNYEALGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVELQRLPNG 780

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
              D IL  D T        V  H       L+ DG+A+ G I++  DV +N+ +P     
Sbjct: 781  EYDFILPGDPT--------VSKHR-----ALNSDGIASKGAIVRQFDVLVNRYTPAAA-- 825

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC----SDKNGDL--CIKFLIRHTRR 907
                      S  R     YK P  +  VVD V +     SD++ D+   IK + R  R 
Sbjct: 826  ----------SEPRPNPLIYKYP--QPAVVDHVVISPPGDSDRSLDVEQKIKVVTREVRI 873

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PE GDKFSSRHGQKGV G I    + PF+E GI PD+IMNPHGFPSRMTVGK++EL+  K
Sbjct: 874  PEPGDKFSSRHGQKGVVGLITDGVNMPFNEMGITPDMIMNPHGFPSRMTVGKLLELVSSK 933

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G+F  G+AF       D  E +   LV+HGF+Y+GKD+ YSGITG  LQAY+F G
Sbjct: 934  VSALTGKFGDGTAFA-----GDNAEDMGAELVRHGFNYHGKDLFYSGITGELLQAYVFFG 988

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            PIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGAS L++
Sbjct: 989  PIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLY 1048

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERL++SSD F +  CR CG +GY      +G CS C   + +S + +PYA KLL+QELQ 
Sbjct: 1049 ERLLLSSDLFTIDACRSCGFMGY------SGYCSYCNTKNTVSRVNVPYAFKLLLQELQG 1102

Query: 1148 MNIVPRLKL 1156
            M I  RL L
Sbjct: 1103 MGISTRLSL 1111


>gi|71026390|ref|XP_762870.1| DNA-directed RNA polymerase III subunit [Theileria parva strain
            Muguga]
 gi|68349822|gb|EAN30587.1| DNA-directed RNA polymerase III subunit, putative [Theileria parva]
          Length = 1244

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1245 (43%), Positives = 781/1245 (62%), Gaps = 134/1245 (10%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGID 75
            + ++  PVK + DK+++LP ++ +RG+ +QH++S+N FV   I+ I+ A  N  + + + 
Sbjct: 21   RYEIYEPVKEIKDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLRTDLY 80

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            PS+ L F D++IG+P  T       KL P +CR+ D TY+APILV I+Y +    + T  
Sbjct: 81   PSLSLEFVDIKIGKPFFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDYFR----DYTFT 136

Query: 135  EKNDVVIGRIPIMLRSCRCVLYGKDEAE---------------------------LAR-- 165
             K ++ IGRIP+MLRSC C L    E+                            L++  
Sbjct: 137  RKENLEIGRIPVMLRSCICFLSSDSESNSDHDSSGLPEYNSSKKSMKNNFDIPDGLSKED 196

Query: 166  ---------LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTE 216
                     L ECP DPGGYFIIKG EKV+L+QEQLSK+R+I++ D K NI A+VTS+T 
Sbjct: 197  RESFYKSYMLDECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDVKKNICATVTSATA 256

Query: 217  TVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP----RYSAL 272
              KS+T +  +  ++YL +N F   +P+ +V+KAMG+E+D E++Q++   P      + L
Sbjct: 257  ESKSRTAVVYKNSQLYLRINSFTDDVPLCIVLKAMGIETDHEIIQLISNSPTTFKNSNNL 316

Query: 273  LLPS------------IEECANLDIYTQEKALEYLEGKVKRSTFG----SPPNDREGRA- 315
              PS            + +  N DI ++  AL Y+  K++    G    S   DR  ++ 
Sbjct: 317  TTPSSNLPNGLDYITFLNDLYNEDINSRLDALMYIGKKIRPRVLGKGFFSSNKDRAPKSK 376

Query: 316  -------FSILRDVFLANVPVHN-NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
                     IL  V L+++P+ +  +F  K   +++M  R++  + N + +DDKD+ GNK
Sbjct: 377  QMILEDTHDILSRVLLSHIPMKDCRDFSGKIKTLSLMAHRVLNVVNNVEPLDDKDHYGNK 436

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK-------PSR--SSRF-DLSQFIVRD 417
            RLEL+GQ++S+LFED +K  +S ++K+++ IL K       P++  +S F D+   +  D
Sbjct: 437  RLELAGQMISILFEDFYKKFLSNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLMPTD 496

Query: 418  SITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
             IT G++  ++TGN+++KRF+M + G++QVL+RLS+I ++G MT+   QFEK RKVSGPR
Sbjct: 497  IITNGMQNAIATGNWNIKRFRMEKSGVSQVLSRLSYISSIGMMTKTDSQFEKGRKVSGPR 556

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
            ALQPSQ+G+LCPCDTPEGE+CGLVKNL+LMTHVT+D     L +L + LGVE ++ LS  
Sbjct: 557  ALQPSQFGILCPCDTPEGESCGLVKNLSLMTHVTSDVPTPVLETLLFTLGVEPIDTLSSH 616

Query: 538  ELHNP------------NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVN 585
            ++ NP            N+ LV+ NG++LG HR  K   + + KLRR G I  FVSV+ N
Sbjct: 617  DMFNPWKGTSEKCDNLLNARLVLLNGILLGIHRNAKFLVNSIIKLRRRGLINMFVSVYEN 676

Query: 586  EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNE 645
             +Q  V+I+SDGGR+CRPL++    + R+ +  +++L++     +     G++E++DVNE
Sbjct: 677  SQQNQVHISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENKIKMEYLFNNGILEWIDVNE 736

Query: 646  ENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
            ENN LI + E D T  TTH+EI P +ILGV+AGLIP+P+HNQSPRNTYQCAMGKQ++G+I
Sbjct: 737  ENNLLIVMREKDITNLTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSI 796

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
             +NQ  R D++++L+ Y Q+PL+TT+TI+LV +DKL AGQNA VAVMSY GY+IEDAI++
Sbjct: 797  GYNQFQRCDTVVHLMNYTQQPLVTTKTIQLVNFDKLPAGQNAIVAVMSYQGYEIEDAIIL 856

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            NK+S+DRGF RC  +++ T       N+TS     P ++                    +
Sbjct: 857  NKASIDRGFARCYTLRRLTC-EITSGNATSLNGFNPSKSQNKDSDS-------------N 902

Query: 826  DDGLAAPGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTY---KGPDGE 879
            ++ +   GE + P  V I+ ++P     T GS M+  G   ++       Y   K     
Sbjct: 903  NEFVIGVGEQVSPGQVLISTKAPPTDFTTNGS-MNGKGTDKNQKTGNDDKYIVNKYNLNT 961

Query: 880  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 939
               +DRV L  + NG+   K ++R +R PE+GDKFSSRHGQKGV G I + ED PF+E G
Sbjct: 962  GGCIDRVILTENYNGNKMYKIMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESG 1021

Query: 940  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP----------SGHAD 989
            I PDLIMNPHGFPSRMTVGK++EL+  K+ V  G F   + F             +  ++
Sbjct: 1022 IVPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSYSDNLCNDLNNSGSN 1081

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
             +  I + L+K+GF   GK+++YSGI+G P+   IF+GPIYYQ+LKHMV DK+HARG GP
Sbjct: 1082 KMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGP 1141

Query: 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 1109
            R  +TRQPTEGR+R+GGLR+GEMERDCLIAYG+S L+ ERLM+SSD F ++VC  CG +G
Sbjct: 1142 RQPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERLMLSSDVFNIEVCSSCGFMG 1201

Query: 1110 YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            Y N       C  C+N ++++ + LPYACKLL QELQ+MNI P L
Sbjct: 1202 YNN------FCKFCQN-NSLAQVSLPYACKLLFQELQAMNIRPSL 1239


>gi|71419186|ref|XP_811091.1| DNA-directed RNA polymerase III subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70875716|gb|EAN89240.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1130

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1151 (45%), Positives = 733/1151 (63%), Gaps = 68/1151 (5%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K  LLP  + ++GL+  H+ SF++ +N  +++I+   +N  I S IDP   +R+ ++R+ 
Sbjct: 17   KLALLPALIGMKGLLNHHIASFDHLINVELKRILLNESNREIKSSIDPDFSIRYTNIRVC 76

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            QP   V    + + ++PH CR  D+TY   ++V++EY      ++   E  D+ IG IPI
Sbjct: 77   QPREIVGKGQLPKAVSPHECRTRDLTYRGDMIVDVEYTSRDRNKRPCTE-TDIKIGTIPI 135

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C L+G+   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D  GN
Sbjct: 136  MLKSSSCNLFGRTREELVAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGN 195

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I A V S T    SK  +  +KG++ ++   F + IPI+V++KA+GMESDQ++ Q +G  
Sbjct: 196  IVAHVQSKTHYSISKCSVTFKKGRIVMVHRSFKEDIPIVVMLKALGMESDQQIAQHIGTT 255

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---------AFS 317
            P + ++L    E+ A L + TQ+ AL ++  + K +++    +D + R         A  
Sbjct: 256  PAFESVLFACFEQAAALGVKTQDDALHFIGERRKETSW--EVDDAQQRHIQKSKADNAAE 313

Query: 318  ILRDVFLANVP----VHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             L +V L ++       + NFR K  YV  M+RRM+EA ++   +D++D+ GNKR E +G
Sbjct: 314  FLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEASVDSSLLDERDFYGNKRFETTG 373

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGN 431
             L+ LLFEDL K     V+  +D  LSK   +  F++ Q +    + I  G+   LS+G 
Sbjct: 374  TLMGLLFEDLLKQFNRVVKTAMDQQLSKKDTTKAFNVKQLMESKLEVIQSGMRVALSSGR 433

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +++KRF M R+G+TQVL+RLS+I  +G MTR++  FEKSRK+SGPR+LQPSQWGM+CPCD
Sbjct: 434  WELKRFNMSRQGITQVLSRLSYIACIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCD 493

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE+CGLVKN  +++ VT D ++  + +  + LGVE+++ +S  E    N + V  NG
Sbjct: 494  TPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGVEEVDSISSREF--LNYYTVFLNG 551

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             ++G HR P      +R LRR+G++   VS+ +N++Q+ V I  DGGR+ R  ++ +   
Sbjct: 552  TLIGIHRYPNRLCRGVRALRRSGRLHPHVSIAINDRQKSVQIGCDGGRIVRLYIVVNHAK 611

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +   H+ +L  G  S +DFL EGL+E++DVNE N+ LIA+Y  D    TTH+E+EP +
Sbjct: 612  PAVTSAHLDQLSAGQYSINDFLAEGLVEFIDVNEANDCLIAVYPRDIETYTTHLEVEPLS 671

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LGV+AG+IP+PHHNQS RNT+Q AMGKQA+G IA+NQ  R D++L L  YPQRPL  T+
Sbjct: 672  LLGVVAGIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRTDTVLMLGAYPQRPLCRTK 731

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
             ++L  Y+KLGAG NA V VMSYSGYDIEDA V N+ SLDRG+GRC+V++K+    ++  
Sbjct: 732  AMDLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLERLP 791

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N   + IL PD      +              L+ DG+A+ G I++  D+ +NK +P+ +
Sbjct: 792  NGEYEIILPPDSNAGKCK-------------ALNSDGIASKGAIVRQFDILVNKYTPVAS 838

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC----SDKNGDL--CIKFLIRHT 905
                + P        R     YK P  +  VVD V +     S+++ D+   IK + R  
Sbjct: 839  ----LEP--------RPNPLVYKYP--QPAVVDHVVILPPGDSERSMDVEQKIKVITREV 884

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R PE GDKFSSRHGQKGV G I    + PF+E+GI PD+IMNPHGFPSRMTVGK++EL+ 
Sbjct: 885  RVPEPGDKFSSRHGQKGVVGLITDGVNMPFNEKGISPDMIMNPHGFPSRMTVGKLLELVS 944

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
             K     G F  G+AFG      D  E +   L+++GF+Y+GKD  YSGITG  +QAY+F
Sbjct: 945  SKVSALTGTFGDGTAFG-----GDNAEDLGMHLLRNGFNYHGKDAFYSGITGEIMQAYVF 999

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
             GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGAS L
Sbjct: 1000 FGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNL 1059

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERL++SSD F V  CR CG LGY       G C  C   + +S + +PYA KLL+QEL
Sbjct: 1060 LNERLLLSSDLFTVDTCRSCGFLGY------CGYCPYCNTKNTVSHVNVPYAFKLLLQEL 1113

Query: 1146 QSMNIVPRLKL 1156
            Q M I  RL L
Sbjct: 1114 QGMGISTRLSL 1124


>gi|407405022|gb|EKF30242.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi
            marinkellei]
          Length = 1128

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1151 (45%), Positives = 735/1151 (63%), Gaps = 68/1151 (5%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K  LLP  + ++GL+  H+ SF++ +N  +++I+   +N  I S IDP   +R+ ++R+ 
Sbjct: 17   KLALLPALIGMKGLLNHHIASFDHLINVELKRILLNESNREIKSSIDPDFSIRYTNIRVC 76

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            QP   V    + + ++PH CR  D+TY   ++V++EY      ++  ME  D+ IG IPI
Sbjct: 77   QPREIVGKGQLPKAVSPHECRTRDLTYRGDMIVDVEYTSRDRNKRPCME-TDIKIGTIPI 135

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C L+GK   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D  GN
Sbjct: 136  MLKSSSCNLFGKTREELVAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGN 195

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I A V S T    SK  +  +KG++ ++   F + IPI+V++KA+GMESDQ++ Q +G  
Sbjct: 196  IVAHVQSKTHYSISKCSVTFKKGRIVMVHRSFKEDIPIVVMLKALGMESDQQIAQHIGTT 255

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---------AFS 317
            P + ++L    E+ A L + TQ+ AL ++  + K +++    +D + R         A  
Sbjct: 256  PAFESVLFACFEQAAALGVKTQDDALHFIGERRKETSW--EVDDAQQRHIQKSKADNAAE 313

Query: 318  ILRDVFLANVP----VHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             L +V L ++       + NFR K  YV  M+RRM+EA ++   +D++D+ GNKR E +G
Sbjct: 314  FLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEASVDSSLLDERDFYGNKRFETTG 373

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGN 431
             L+ LLFED+ K     V+  +D  LSK   +  F++ Q +    + I  G+   LS+G 
Sbjct: 374  TLMGLLFEDVLKQFNRVVKTAMDQQLSKKDTTKPFNVKQLMESKLEVIQSGMRVALSSGR 433

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +++KRF M R+G+TQVL+RLS+I  +G MTR++  FEKSRK+SGPR+LQPSQWGM+CPCD
Sbjct: 434  WELKRFNMSRQGITQVLSRLSYIACIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCD 493

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE+CGLVKN  +++ VT D ++  + +  + LGVE+++ +S  E    N + V  NG
Sbjct: 494  TPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGVEEVDSISSREF--LNYYTVFLNG 551

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             ++G HR P      +R LRR+G++   VS+ +N++Q+ V I  DGGR+ R  ++ +   
Sbjct: 552  TLIGIHRYPNRLCRGVRALRRSGRLHPHVSIAINDRQKSVQIGCDGGRIVRLYIVVNNAK 611

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +   H+ +L  G  S +DFL EGL+E++DVNE N+ LIA+Y  D    TTH+E+EP +
Sbjct: 612  PAVSSAHLDQLSAGQCSINDFLAEGLVEFIDVNEANDCLIAVYPRDIETYTTHLEVEPLS 671

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LGV+AG+IP+PHHNQS RNT+Q AMGKQA+G IA+NQ  R D++L L  YPQRPL  T+
Sbjct: 672  LLGVVAGIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRTDTVLMLGAYPQRPLCRTK 731

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
             ++L  Y+KLGAG NA V VMSYSGYDIEDA V N+ SLDRG+GRC+V++K+    ++  
Sbjct: 732  AMDLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLERLP 791

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N   + IL PD      +              L+ DG+A+ G I++  D+ +NK +P+ +
Sbjct: 792  NGEYEIILPPDSNAGKCK-------------ALNSDGIASKGAIVRQFDILVNKYTPVAS 838

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC----SDKNGDL--CIKFLIRHT 905
                + P        R     YK P  +  VVD V +     S+++ D+   IK + R  
Sbjct: 839  ----LEP--------RPNPLVYKYP--QPAVVDHVVILPPGDSERSMDVEQKIKVITREV 884

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R PE GDKFSSRHGQKGV G I    + PF+E+GI PD+IMNPHGFPSRMTVGK++EL+ 
Sbjct: 885  RVPEPGDKFSSRHGQKGVVGLITDGVNMPFNEKGISPDMIMNPHGFPSRMTVGKLLELVS 944

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
             K     G F  G+AFG      +  + +   L+++GF+Y+GKD+ YSGITG  +QAY+F
Sbjct: 945  SKVSALTGTFGDGTAFG-----GENADDLGMQLLRNGFNYHGKDVFYSGITGEIMQAYVF 999

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
             GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGAS L
Sbjct: 1000 FGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNL 1059

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERL++SSD F V  CR CG LGY       G C  C   + +S + +PYA KLL+QEL
Sbjct: 1060 LNERLLLSSDLFTVDTCRSCGFLGY------CGYCPYCNTKNTVSHVNVPYAFKLLLQEL 1113

Query: 1146 QSMNIVPRLKL 1156
            Q M I  RL L
Sbjct: 1114 QGMGISTRLSL 1124


>gi|407844014|gb|EKG01762.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1130

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1151 (45%), Positives = 734/1151 (63%), Gaps = 68/1151 (5%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--RANDRIVSGIDPSIFLRFKDVRIG 88
            K  LLP  + ++GL+  H+ SF++ +N  +++I+   +N  I S IDP   +R+ ++R+ 
Sbjct: 17   KLALLPALIGMKGLLNHHIASFDHLINVELKRILLNESNREIKSSIDPDFSIRYTNIRVC 76

Query: 89   QPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
            QP   V    + + ++PH CR  D+TY   ++V++EY      ++   E  D+ IG IPI
Sbjct: 77   QPREIVGKGQLPKVVSPHECRTRDLTYRGDMIVDVEYTSRDRNKRPCTE-TDIKIGTIPI 135

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C L+GK   EL  + ECPLDPGGYFIIKG EKV L+QEQ SKNRVII+ D  GN
Sbjct: 136  MLKSSSCNLFGKTREELVAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGN 195

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
            I A V S T    SK  +  +KG++ ++   F + IPI+V++KA+GMESDQ++ Q +G  
Sbjct: 196  IVAHVQSKTHYSISKCSVTFKKGRIVMVHRSFKEDIPIVVMLKALGMESDQQIAQHIGTT 255

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---------AFS 317
            P + ++L    E+ A L + TQ+ AL ++  + K +++    +D + R         A  
Sbjct: 256  PAFESVLFACFEQAAALGVKTQDDALHFIGERRKETSW--EVDDAQQRHIQKSKADNAAE 313

Query: 318  ILRDVFLANVP----VHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             L +V L ++       + NFR K  YV  M+RRM+EA ++   +D++D+ GNKR E +G
Sbjct: 314  FLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEASVDSSLLDERDFYGNKRFETTG 373

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSITVGLERTLSTGN 431
             L+ LLFEDL K     V+  +D  LSK   +  F++ Q +    + I  G+   LS+G 
Sbjct: 374  TLMGLLFEDLLKQFNRVVKTAMDQQLSKKDTTKPFNVKQLMESKLEVIQSGMRVALSSGR 433

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +++KRF M R+G+TQVL+RLS+I  +G MTR++  FEKSRK+SGPR+LQPSQWGM+CPCD
Sbjct: 434  WELKRFNMSRQGITQVLSRLSYIACIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCD 493

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEGE+CGLVKN  +++ VT D ++  + +  + LGVE+++ +S  E    N + V  NG
Sbjct: 494  TPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGVEEVDSISSREF--LNYYTVFLNG 551

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
             ++G HR P      +R LRR+G++   VS+ +N++Q+ V I  DGGR+ R  ++ +   
Sbjct: 552  TLIGIHRYPNRLCRGVRALRRSGRLHPHVSIAINDRQKSVQIGCDGGRIVRLYIVVNHAK 611

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +   H+ +L  G  S +DFL EGL+E++DVNE N+ LIA+Y  D    TTH+E+EP +
Sbjct: 612  PAVTSAHLDQLSAGQCSINDFLAEGLVEFIDVNEANDCLIAVYPRDIETYTTHLEVEPLS 671

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            +LGV+AG+IP+PHHNQS RNT+Q AMGKQA+G IA+NQ  R D++L +  YPQRPL  T+
Sbjct: 672  LLGVVAGIIPFPHHNQSARNTFQSAMGKQALGTIAYNQYIRTDTVLMVGAYPQRPLCRTK 731

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
             ++L  Y+KLGAG NA V VMSYSGYDIEDA V N+ SLDRG+GRC+V++K+    ++  
Sbjct: 732  AMDLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEVDLERLP 791

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
            N   + IL PD      +              L+ DG+A+ G I++  D+ +NK +P+ +
Sbjct: 792  NGEYEIILPPDSNAGKCK-------------ALNSDGIASKGAIVRQFDILVNKYTPVAS 838

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC----SDKNGDL--CIKFLIRHT 905
                + P        R     YK P  +  VVD V +     S+++ D+   IK + R  
Sbjct: 839  ----LEP--------RPNPLVYKYP--QPAVVDHVVILPPGDSERSMDVEQKIKVITREV 884

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R PE GDKFSSRHGQKGV G I    + PF+E+GI PD+IMNPHGFPSRMTVGK++EL+ 
Sbjct: 885  RVPEPGDKFSSRHGQKGVVGLITDGVNMPFNEKGISPDMIMNPHGFPSRMTVGKLLELVS 944

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
             K     G F  G+AFG      D  E +   L+++GF+Y+GKD+ YSGITG  +QAY+F
Sbjct: 945  SKVSALTGTFGDGTAFG-----GDNAEDLGMHLLRNGFNYHGKDVFYSGITGEIMQAYVF 999

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
             GPIYYQ+LKHMV DKMHAR +GPR MLTRQPTEGR+R+GGLRVGEMERDC++ YGAS L
Sbjct: 1000 FGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNL 1059

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERL++SSD F V  CR CG LGY       G C  C   + +S + +PYA KLL+QEL
Sbjct: 1060 LNERLLLSSDLFTVDTCRSCGFLGY------CGYCPYCNTKNTVSHVNVPYAFKLLLQEL 1113

Query: 1146 QSMNIVPRLKL 1156
            Q M I  RL L
Sbjct: 1114 QGMGISTRLSL 1124


>gi|85001437|ref|XP_955436.1| DNA-directed RNA polymerase iii [Theileria annulata strain Ankara]
 gi|65303582|emb|CAI75960.1| DNA-directed RNA polymerase iii, putative [Theileria annulata]
          Length = 1244

 Score = 1006 bits (2600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1244 (43%), Positives = 776/1244 (62%), Gaps = 132/1244 (10%)

Query: 18   KQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGID 75
            + ++  PVK + DK+++LP ++ +RG+ +QH++S+N FV   I+ I+ A  N  + + + 
Sbjct: 21   RYEVYEPVKEIKDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLRTELY 80

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSE-KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            PS+ L F D++IG+P  T       KL P +CR+ D TY+APILV I+Y +    + T  
Sbjct: 81   PSLSLEFVDIKIGKPFFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDYFR----DYTFT 136

Query: 135  EKNDVVIGRIPIMLRSCRCVL------------YGKDEAELAR----------------- 165
             K ++ IGRIP+MLRSC C L             G  E    +                 
Sbjct: 137  RKENLEIGRIPVMLRSCICFLSSDSESQSDEDSLGSSEYNHPKKSTKNNFDIPDGLSKED 196

Query: 166  ---------LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTE 216
                     L ECP DPGGYFIIKG EKV+L+QEQLSK+R+I++ D K NI A+VTS+T 
Sbjct: 197  RESFYKSYMLDECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDVKKNICATVTSATA 256

Query: 217  TVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP--------R 268
              KS+T +  +  ++YL +N F   +P+ +V KAMG+E+D E++Q++             
Sbjct: 257  ESKSRTAVVYKNSQLYLRINSFTDDVPLCIVFKAMGIETDHEIIQLISNSSTNFKKSKKS 316

Query: 269  YSALLLPS-------IEECANLDIYTQEKALEYLEGKVKRSTFG----SPPNDREGRA-- 315
              +  LP+       + +  N +I T+  AL Y+  K++    G    S   DR  ++  
Sbjct: 317  NQSSNLPNGFDYITFLNDLYNENINTRLDALMYIGKKIRPRILGKGFFSSNKDRAPKSKQ 376

Query: 316  ------FSILRDVFLANVPVHN-NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
                    IL  V L+++P+ +  +F  K   +++M  R++  + N + +DDKD+ GNKR
Sbjct: 377  MIIEDTHDILSRVLLSHIPMRDCRDFSGKIKTLSLMAHRVLNVVNNVEPLDDKDHYGNKR 436

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSK-------PSR--SSRF-DLSQFIVRDS 418
            LEL+GQ++S+LFED +K  ++ ++K+++ I+ K       P++  +S F D+   +  D 
Sbjct: 437  LELAGQMISILFEDFYKKFLNNMKKSIESIIVKYLESNPNPTKGENSNFPDIFGLMPTDI 496

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            IT G++  ++TGN+++KRF+M + G++QVL+RLS+I ++G MT+   QFEK RKVSGPRA
Sbjct: 497  ITNGMQNAIATGNWNIKRFRMEKTGVSQVLSRLSYISSIGMMTKTDSQFEKGRKVSGPRA 556

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            LQPSQ+G+LCPCDTPEGE+CGLVKNL+LMTHVT+D     L +L + LGVE ++ LS  +
Sbjct: 557  LQPSQFGILCPCDTPEGESCGLVKNLSLMTHVTSDVPTPVLETLLFTLGVEPIDTLSSHD 616

Query: 539  LHNP------------NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE 586
            + NP            NS LV+ NG++LG HR        + KLRR G I  FVSV+ N 
Sbjct: 617  MFNPWKGTSGKSDNRRNSRLVLLNGILLGIHRNANFLISSIIKLRRKGLINMFVSVYENS 676

Query: 587  KQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEE 646
            +Q  V+I+SDGGR+CRPL++    + ++ +  +++L++     D     G++E++DVNEE
Sbjct: 677  QQNQVHISSDGGRLCRPLIVVQNSVPKLTDELVQQLVENKIKIDYLFNNGILEWIDVNEE 736

Query: 647  NNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
            NN LI + E D T  TTH+EI P +ILGV+AGLIP+P+HNQSPRNTYQCAMGKQ++G+I 
Sbjct: 737  NNLLIVMRERDITNLTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIG 796

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
            +NQL R D++++L+ Y Q+PL+TT+TI+LV +DKL AGQNA VAVMSY GY+IEDAI++N
Sbjct: 797  YNQLQRCDTVVHLMNYTQQPLVTTKTIQLVNFDKLPAGQNAIVAVMSYQGYEIEDAIILN 856

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            K+S+DRGF RC  +++ T       N+TS     P+++                     +
Sbjct: 857  KASIDRGFARCYTLRRLTC-EITPGNATSINGYNPNKSQNKDSDST-------------N 902

Query: 827  DGLAAPGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTY---KGPDGET 880
            + +   GE +KP  V I+ ++P     T GS+    G+++    +    Y   K      
Sbjct: 903  EYVIGVGEPVKPGQVLISTKAPPTDFTTNGSMNGKNGESNQSSGTNEDKYIVNKYDLNTG 962

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
              +DR+ L  + NG+   K ++R +R PE+GDKFSSRHGQKGV G I + ED PF+E GI
Sbjct: 963  GYIDRLILTENFNGNTMYKIMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGI 1022

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP----------SGHADT 990
             PDLIMNPHGFPSRMTVGK++EL+  K+ V  G F   + F             +   D 
Sbjct: 1023 VPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSYSDNLCNDLNNTKTDN 1082

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            +  I   L+K+GF   GK+++YSGI+G P+   IF+GPIYYQ+LKHMV DK+HARG GPR
Sbjct: 1083 MSDICNILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPR 1142

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
              +TRQPTEGR+R+GGLR+GEMERDCLIAYG+S L+ ERLM+SSD F +++C  CG +GY
Sbjct: 1143 QPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLIERLMLSSDVFNIEICTSCGFMGY 1202

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N       C  C+N ++++ + LPYACKLL QELQ+MNI P L
Sbjct: 1203 NN------FCKFCQN-NSLAQVSLPYACKLLFQELQAMNIRPSL 1239


>gi|402589446|gb|EJW83378.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 947

 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/959 (51%), Positives = 668/959 (69%), Gaps = 29/959 (3%)

Query: 19  QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
           +K    V+++ DK+ L+P FL+VRGLVKQH+ S++YFV+T I+KI+RANDRI S  +PS 
Sbjct: 2   EKTTEEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTEIKKILRANDRITSDANPSF 61

Query: 79  FLRFKDVRIGQPSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
           +L++ D+R+G PS     + +++K++PH CRL DMTY+API V+IEY +GS      + +
Sbjct: 62  YLKYLDIRVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQR----VLR 117

Query: 137 NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
           N ++IG++P+MLRS +CVL   +E+ELAR+ ECP DPGGYFII+G+EKV+LIQEQLSKNR
Sbjct: 118 NGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVVLIQEQLSKNR 177

Query: 197 VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
           ++I  + K  +   V SST+  KSKT I   K + Y+  NQ    +P+ +V KAMG ESD
Sbjct: 178 IMIGRNSKKELQCEVLSSTQERKSKTYIASRKQRYYVRHNQLSDDVPVAIVFKAMGFESD 237

Query: 257 QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPND-----R 311
            ++V  VG + ++ A + PSIEECA+  I TQE AL+Y+  KVK   FG   +      R
Sbjct: 238 HDIVSAVGLEEKFVAAMAPSIEECASHQIVTQEGALQYIASKVKMRKFGPTASGTSTLPR 297

Query: 312 EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
           E  A   L ++ +A+VP  + N + K  Y+ +M+RR+++A +     DD+D+ GNKRLEL
Sbjct: 298 EHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLEL 357

Query: 372 SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
           +G L++LLFED+FK   SE+++  D  L K + ++  D+ + + +D IT  L   L+TGN
Sbjct: 358 AGSLLALLFEDVFKRFNSELKRIADNSLGK-TLAAPLDIVKHVRQDLITNALVDALATGN 416

Query: 432 FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
           + +KRFKM R+G+TQVL+RLS+I  LG MTR++  FEK+RKVSGPR+LQPSQWGMLCP D
Sbjct: 417 WTIKRFKMERQGVTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSD 476

Query: 492 TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
           TPEGE+CGLVKNLAL++H+TTD +E P+I L Y  GVED++ L    +H+P   +V  NG
Sbjct: 477 TPEGESCGLVKNLALISHITTDSDEKPVIRLLYNAGVEDVKSLHFSAIHSPAYHIVFLNG 536

Query: 552 LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
           +I+G    P+     +R +RR G + EFVSV  N  QR VYIASDGGR+CRP +I   G+
Sbjct: 537 VIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKNGV 596

Query: 612 SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
            ++ + H++EL  G R F+DF+ +GLIEYLDVNE N+A IA+YE    P TTH+EIEPFT
Sbjct: 597 PQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKPTTTHLEIEPFT 656

Query: 672 ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
           +LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+DSL+YLLVYPQRPL+ T+
Sbjct: 657 LLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTK 716

Query: 732 TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
           TIE   ++KL AGQNA +AVMSYSGYDIEDA+V+NK+SLDRG+GRC+V K   A  +KY 
Sbjct: 717 TIEFCNFEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYP 776

Query: 792 NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP--- 848
           N T DR++ P  T     R  +  H      +LD +G+   G  I+   V INK  P   
Sbjct: 777 NQTFDRLMGP--TIEATTRKPIYKHQ-----VLDQEGIVYVGACIRSKQVMINKHMPVVS 829

Query: 849 LETRGSI-----MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
           +E   ++      S  G     Y+     Y+ P       +RV L  +++    IK L+R
Sbjct: 830 MEAGATVSNNDGTSVGGSHGVEYKDVSVVYRNPI--PSYAERVLLTYNEDDAHLIKVLLR 887

Query: 904 HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            TRRPELGDKFSSRHGQKGVCG I QQED PF++ G+CPD+IMNPHG+PSRMTVGK++E
Sbjct: 888 QTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLME 946


>gi|428672278|gb|EKX73192.1| DNA-directed RNA polymerase III subunit, putative [Babesia equi]
          Length = 1363

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1300 (42%), Positives = 779/1300 (59%), Gaps = 174/1300 (13%)

Query: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDP 76
             +LA PVK + DK+++LP +  +RG+ +QH++S++ FV   I++I+ A  N  I + +DP
Sbjct: 77   NELAEPVKEIKDKWKILPCYFGMRGIARQHINSYDDFVLREIKEIMNAPSNKIIRTDVDP 136

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
               L F D+RIG+P +  + V+  L P MCR+ D+TY+API V+++YV+G       + K
Sbjct: 137  QFMLEFVDIRIGKPCIEENMVAVMLTPQMCRIRDLTYSAPIYVDVDYVRGPEF----VRK 192

Query: 137  NDVVIGRIPIMLRSCRCVL---------------YGKDEA-------------------- 161
             ++ IGR+P+MLRSC C L               Y KD +                    
Sbjct: 193  ENLEIGRLPVMLRSCVCALSKNVQKNSSDNDYSEYKKDSSHNKYIDEVYGDTYNKDFDFM 252

Query: 162  ---------ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVT 212
                     E +RL ECP DPGGYFIIKG EKV+L+QEQLSK+R+I++ D+K NI AS+T
Sbjct: 253  SDDYKESFYEFSRLNECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDQKKNICASIT 312

Query: 213  SSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR------- 265
            S+T   KS+T +  + G++Y+ LN F   +P+ +V+KAMG+E+DQE+ Q++G        
Sbjct: 313  SATAESKSRTSVVYKNGQLYVRLNSFTDDVPLCIVLKAMGVETDQEIAQLIGSTKLKGKT 372

Query: 266  ---------------------DPRYSAL----------LLPSIEECANLDIYTQEKALEY 294
                                 + + SA+             S+ +  N  I+++  AL Y
Sbjct: 373  DMDNLAYSNDSTDDIDLSGTTNYKSSAMGSTHGNSGSDYSLSLHDLYNEGIHSRLDALLY 432

Query: 295  LEGKVK-----RSTFGSPPNDREGRAFSILRD-------VFLANVPVHN-NNFRPKCFYV 341
            +  K++     +  F S  +       SIL D       V L++VP+ +  +F  K   +
Sbjct: 433  IGRKIRPRPIAKGFFSSNKDSTPKTRQSILEDTHDLFSRVLLSHVPMRDCRDFSGKIKTL 492

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
             +M RR++  +   + +DDKD+ GNKRLEL+GQL+S+LFEDL+K  I++ +K +D  L +
Sbjct: 493  CLMARRVLNVVSGNEPLDDKDHYGNKRLELAGQLISILFEDLYKKFIAQFKKQIDQTLDR 552

Query: 402  --PSRSSRF--------DLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARL 451
               S+SS          D+ + +  D +T G++  +STGN+++KRFKM R G++ VL+RL
Sbjct: 553  FMDSKSSGTRDTNLQYPDIIRNLPTDILTRGMQTAISTGNWNIKRFKMERSGVSHVLSRL 612

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            S+I  +G M + + Q EK RKVSGPRALQPSQ+G++CPCDTPEGE+CGLVKNL+LM+HVT
Sbjct: 613  SYISCIGMMAKSNSQVEKGRKVSGPRALQPSQFGLICPCDTPEGESCGLVKNLSLMSHVT 672

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEE-LHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +D +   LISL Y LGVE    L+  +   +P++  V+ NG++LG H+  K     +  L
Sbjct: 673  SDGDVDLLISLLYWLGVESFNSLTASDGFDDPSNSTVLLNGILLGVHQNSKELIRNIISL 732

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD 630
            RR G I  FVSV+ N   R V+++SDGGR+CRPL++ + G   + + H+ +L+    S D
Sbjct: 733  RRRGIINPFVSVYENYHHRQVHVSSDGGRLCRPLIVVENGFPLLTDSHINDLVSKKISLD 792

Query: 631  DFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPR 690
               + G++E++DVNEENN LI + E D T +TTH+EI P +ILGV+AGLIP+P+HNQSPR
Sbjct: 793  YLFQNGILEWIDVNEENNLLIVMRESDITIETTHLEISPMSILGVVAGLIPFPNHNQSPR 852

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQCAMGKQ++G I +NQL R D+++YLL Y Q+PL+TT+ I+LV +DKL AGQNA VA
Sbjct: 853  NTYQCAMGKQSIGTIGYNQLNRCDTIIYLLAYTQKPLVTTKAIQLVNFDKLPAGQNAIVA 912

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS----------------- 793
            VMSY GY+IEDAIV+N++S DRGFGRC  +++ T   +K  +S                 
Sbjct: 913  VMSYQGYEIEDAIVINRASCDRGFGRCFSLRRITQEIEKSTDSDLDLSMTYRNVSRCITP 972

Query: 794  ------TSDRILRPD-------RTGPGAERMQVVHHSNLLLLILDDDGLA--------AP 832
                  + D  +RP+         G      QV+   +L   +     L         + 
Sbjct: 973  FGSKVRSMDGNMRPNTNVDYVINVGERVTNQQVILDKSLFSTVNSQLSLENLTITRKIST 1032

Query: 833  GEIIKPNDVYI---------NKESPLETRGSI-MSPTGQ---TDSRYRSARQTYKGPDGE 879
             +++ P  V +         NK++     GS+ +S TG+    +    S  +  K P   
Sbjct: 1033 NQLVDPLTVLMDTSSEQSDPNKKNVSFKEGSVSVSSTGRVPLANFGAGSKMKAVKYPFNR 1092

Query: 880  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 939
               +DR+       G    K ++R  R PE+GDKFSSRHGQKGV G I  QE+ PFSE G
Sbjct: 1093 PAYIDRIICSETLGGTRLYKIMLRQMRSPEVGDKFSSRHGQKGVVGLIESQENLPFSEFG 1152

Query: 940  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 999
              PDL+MNPHGFPSRMTVGKM+EL+  KA V  G F  G+ F E     +T+  I   L 
Sbjct: 1153 WVPDLVMNPHGFPSRMTVGKMLELVASKAAVLDGLFKDGTPFQE-----NTLPEIERILE 1207

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
              GF   GK+++YSGITG PL+ YIF GPIYYQ+LKHMV DK+HAR  GPR  + RQPTE
Sbjct: 1208 SKGFHKAGKEILYSGITGEPLETYIFTGPIYYQRLKHMVQDKIHARSRGPRHNINRQPTE 1267

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI 1119
            GR+R+GGLR+GEMERDCLIAYGAS LI ERLM+SSD F + VCR CG +GY       G 
Sbjct: 1268 GRSRDGGLRLGEMERDCLIAYGASGLIVERLMLSSDVFTLDVCRRCGFIGY------DGW 1321

Query: 1120 CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            C+ CK       + +PYACKLL QELQ+MNI P + L E 
Sbjct: 1322 CTYCKQHGLTVQVAIPYACKLLFQELQAMNIKPSIILREG 1361


>gi|118358942|ref|XP_001012712.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89294479|gb|EAR92467.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1141

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1160 (45%), Positives = 735/1160 (63%), Gaps = 50/1160 (4%)

Query: 20   KLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPS 77
            K A P++   +K +++  +L   G V  H+ SFNYF+N  +++I+ +  N  +    D S
Sbjct: 4    KTAEPLR---EKTRIIDSYLAHNGFVSHHIQSFNYFINIKLQQIITSSMNKELRLDTDNS 60

Query: 78   IFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
              L +  + I  P+   D  +  L P   RLS+ +YA  I V+ E       E +  + N
Sbjct: 61   FLLEYTKIYIEPPAH--DNKTMML-PQEARLSNSSYAGNIYVDCELTFNGKKEDSLRKVN 117

Query: 138  DVVIGRIPIMLRSCRCVLYGKDE-AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
               IG++PIML S  C L    E  ++ +L EC  DP GYFIIKG EKV LIQEQL+ NR
Sbjct: 118  ---IGKMPIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKVFLIQEQLADNR 174

Query: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
            + I+ DK   + A+V S+T   KS T + ++  K+Y+ ++ F K IP+++  KA G+ES+
Sbjct: 175  IFIEEDKNKELVANVKSNTVDTKSITSLIIKNHKIYVKVSSFSKPIPLLIFFKAYGVESE 234

Query: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG--- 313
            QE+ Q++G +      L   +E+     +YTQ++ALEYL  +++  TF            
Sbjct: 235  QEIFQLIGTEEHLLNRLALCLEDIEQSQVYTQQQALEYLSKRLRPKTFQDKKYSSRNPVD 294

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  I+ +V L ++P  N N+ P+  ++ +M RR++EA+ +   +D +DY GNKR++ +G
Sbjct: 295  EARDIITNVVLCHIPCKNYNYYPRAIFLGLMARRLIEALDDPSKIDKRDYYGNKRMKCAG 354

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS-----RFDLSQFIVRDSITVGLERTLS 428
              + LLFED FK     V+K +   + K    S     R +       D IT GL   +S
Sbjct: 355  WYLELLFEDKFKQFNMMVRKELSKEIEKHKNKSYPIKNRVESILEKNHDIITQGLNNAIS 414

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ +KRF+M   G+TQVLAR+S+I  +G MTR++ QF+KSRK++GPR+L  S WG++C
Sbjct: 415  TGNWTIKRFRMDTVGVTQVLARISYIAAIGMMTRMNSQFKKSRKLTGPRSLLGSHWGLVC 474

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P DTP+GE+CGL KNL+LM H+T +E++  L ++   LG+ED+   S  E+H   +++V 
Sbjct: 475  PADTPDGESCGLTKNLSLMAHITIEEKKNVLSTIALNLGMEDIGHYSSGEIHEDKNYMVF 534

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG I+G HR P+ FA  +R +RR GKIG  +S+  N ++R VY+ +D GR+CR L++ +
Sbjct: 535  LNGQIIGMHRDPEAFAQKLRFMRRRGKIGTTISISTNSEKRAVYLDTDDGRLCRLLIVVE 594

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA--TPDTTHIE 666
             G   I   H+ +L +  +S+ D +R GLIEY+DVNEE+N  IA+ + D      TTH+E
Sbjct: 595  NGKPLITNDHLNDLKEKRKSYLDLIRMGLIEYIDVNEEDNCYIAIKQEDIPNRSKTTHME 654

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P T+LGV++GL+PYPHHNQ+ RNT+QCAMGKQA+G I    + R+D++LY L+YPQ P
Sbjct: 655  IDPLTLLGVVSGLVPYPHHNQASRNTFQCAMGKQALGIIGSTSMNRVDTILYQLIYPQTP 714

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            LL T+ IE  GYDK  AG NA++AV+SYSGYDIEDA V+NKSSLDRGFGR +V KKY   
Sbjct: 715  LLKTKVIEYAGYDKFPAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETE 774

Query: 787  NQKYANSTSDRILR-PDRTGPGAERMQVVHHSNLLLL---ILDDDGLAAPGEIIKPNDVY 842
             QK   S    +LR P +   G+ + +     N +L     LDDDG    G  I   DV 
Sbjct: 775  IQKLKMSGLTELLRGPPKEAEGSYKKK----QNRVLKKFGALDDDGTPIVGASINNGDVL 830

Query: 843  INKESPLET----RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
             NK +PL T    RG  +     + S Y     T+KG   +   +DRV + S ++G++ I
Sbjct: 831  FNKYTPLLTLEQQRGRDIL-NNNSVSEYIHNPTTFKGK--KLARIDRV-IRSQQDGNVII 886

Query: 899  KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
            K ++R TRRPE GDKFSSRHGQKG+ G IV QED PFSE+G  PDLIMNPHG+PSRMTVG
Sbjct: 887  KTIVRETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVG 946

Query: 959  KMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGC 1018
            K++ELLG KA V  G+F YG+AFG      D +  +S  LV++GFSY GKD+I SGITG 
Sbjct: 947  KLLELLGSKAAVLSGQFKYGTAFG-----GDKMADLSSILVQNGFSYTGKDVIISGITGE 1001

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
             +Q Y+F GP++YQ+LKHMV DK+HAR  G    LTRQPTEGRA++GGLR+GEMERD L+
Sbjct: 1002 YMQCYVFCGPVFYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLL 1061

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYAC 1138
            A+ +S L+ ERLM+SSD F VQVC  CG + + N       C  C+  D +S + +PYAC
Sbjct: 1062 AFASSNLLIERLMISSDKFSVQVCEKCGFIQHTNS------CKMCQT-DQVSKVVMPYAC 1114

Query: 1139 KLLIQELQSMNIVPRLKLAE 1158
            KLL QEL SMNI P+L L +
Sbjct: 1115 KLLFQELLSMNIKPKLNLVD 1134


>gi|47156951|gb|AAT12334.1| DNA-directed RNA polymerase III subunit 2 130KDa subunit [Antonospora
            locustae]
          Length = 1014

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1065 (47%), Positives = 691/1065 (64%), Gaps = 67/1065 (6%)

Query: 103  PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGK-DEA 161
            P  CRL D+TY   I V+IEY +     +  + K +V IG++PIMLRS  C L  K D+ 
Sbjct: 8    PEECRLRDLTYCGNIYVDIEYTK----HRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDDC 63

Query: 162  ELARLG----ECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTET 217
            E  R      ECPLD GGYFI+KG E+V+LIQEQLSKNR+I D D KG    SVTSST  
Sbjct: 64   ETVRETYGHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSVTSSTHD 123

Query: 218  VKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSI 277
             KSKT I ++K  +YL  N F   +P ++V+KA+GM SD E+ + VG++     +L PS+
Sbjct: 124  KKSKTSIILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEGALLEMLEPSL 183

Query: 278  EECANLDIYTQEKALEYLEGKVKRSTFGSPPND--REGRAFSILRDVFLANVPVHNNNFR 335
            E      ++TQ +AL+++      S    P  +  R   A +IL +V L N+P    + R
Sbjct: 184  EHALQTGVHTQLQALDFI------SKLTRPRQNVSRIDEARTILYEVVLPNIPNDGIDMR 237

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV 395
             K   VA+M+R +++A LN  +MDD D++GNKR EL+G L+S+LFED F    SE++K++
Sbjct: 238  RKAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELAGNLLSILFEDTFLRFNSELKKSI 297

Query: 396  DIILSKPSRSSRFDLSQFI--VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSF 453
            D +LSK  R+   D   F+    + I+    R +STGN+ V+RF+M R G+TQVL+RLS+
Sbjct: 298  DKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRFRMERAGVTQVLSRLSY 357

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
            I  +G M ++  QFEK+RK+SGPR+L  S WGMLCP DTPEGE+CGLVKNLA++  +TTD
Sbjct: 358  IAMIGSMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPEGESCGLVKNLAILAEITTD 417

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
              +  +  L + LGV D    SG + ++ +S+L+  NG I+G             ++RR 
Sbjct: 418  VPQSDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTIVGICYNNNTLVRKFVEMRRR 477

Query: 574  GKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFL 633
            G + +FVSV+ N+++R + IA+DGGR+CRPL+I + G   ++   ++ L    ++ DD  
Sbjct: 478  GVVSQFVSVYKNDEKRTISIATDGGRICRPLIIVENGRQMLEHEDLELLRRRYKNPDDLF 537

Query: 634  REGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
            +EG +E+LDVNEENN  IAL E +    TTH+EI  ++ILG +AGLIPYPHHNQSPRNTY
Sbjct: 538  KEGKVEFLDVNEENNTKIALRESNICRSTTHLEICEYSILGCVAGLIPYPHHNQSPRNTY 597

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            QCAMGKQAMG +A NQ  R D+LL LLVYPQ+PL++T+  ++V ++KL AGQN  VAVM+
Sbjct: 598  QCAMGKQAMGFVALNQYRRFDTLLNLLVYPQKPLVSTKITDIVNFEKLPAGQNGMVAVMA 657

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            Y+GYDIEDA+++NK +LDRGFGRC V + Y    ++Y+N   DRI        G++    
Sbjct: 658  YAGYDIEDALIINKGALDRGFGRCEVYRSYKHSLKRYSNGMCDRI-------SGSK---- 706

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
              HS         DG+  PGE +   D ++ KESP E            D+ ++ + + Y
Sbjct: 707  --HS---------DGVRGPGERVFDGDFFVYKESPTE------------DADFKFSGELY 743

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
            K  +    VVD+V +         +K  +R  R+PE+GDKFSSRHGQKGV G +V + D 
Sbjct: 744  K--NLSPSVVDKVIVARSGEDQFMVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPETDL 801

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            PFSE G  PD+IMNPHGFPSRMTVGK+IEL+ GKA V  GR    + F E     D  E 
Sbjct: 802  PFSEDGQVPDIIMNPHGFPSRMTVGKIIELISGKAAVFTGRQSDATVFRE-----DITED 856

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            +S  L+KHG+SY GKD   +GITG   + Y+F GP+YYQ+LKHMV DKMHAR  GPR ML
Sbjct: 857  LSHILIKHGYSYCGKDTFTNGITGDVYEGYVFFGPVYYQRLKHMVADKMHARSRGPRAML 916

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
            TRQPTEG++R GGLR+GEMERDCLI YGAS ++ ERLM+SSD F   +C  CG++ Y N 
Sbjct: 917  TRQPTEGKSREGGLRLGEMERDCLIGYGASAILCERLMISSDVFRAYICHRCGIIVYKN- 975

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
                 +C+ CK GD +  + +PYACKLL QEL SMNI+PR+KL +
Sbjct: 976  -----MCTLCKRGDPV-PVDMPYACKLLFQELMSMNILPRIKLQK 1014


>gi|429961383|gb|ELA40928.1| hypothetical protein VICG_02017 [Vittaforma corneae ATCC 50505]
          Length = 1108

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1172 (43%), Positives = 742/1172 (63%), Gaps = 119/1172 (10%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPS 91
            ++L+  FLK + LV+QHL+SFNYF++  IR I+ AN+ + S ID + +L++ D+R+G PS
Sbjct: 8    YELIKLFLKEKTLVRQHLESFNYFIDYDIRSIMNANNIVDSDIDHTFYLKYLDIRVGAPS 67

Query: 92   MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 151
            +T + +  ++ P  CR  D+TY+A I V++EYV+     K  + K D+ +G++PIMLRS 
Sbjct: 68   VTENMIETQIYPLECRNRDLTYSANIYVDVEYVRN----KQVVIKRDLCMGKLPIMLRSN 123

Query: 152  RCVLYGKDEAELARLG----------ECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT 201
            RC+L  K+   +  +           EC LD GGYFII+G E+V+LIQEQLSKNR++++ 
Sbjct: 124  RCLLSAKNNDIIESVSTVNKRIKESQECFLDNGGYFIIQGIERVILIQEQLSKNRIMLEE 183

Query: 202  DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
              KG + ASVTSS+   KSKT + ++    Y+    F + +P ++++KA+G+ SD E+ +
Sbjct: 184  GTKG-VYASVTSSSIEHKSKTSLIVKDDCFYIQSTSFNEDVPAVILIKALGIISDAEICE 242

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
            +VG++     +LLPS EE  +  I+ +E+A+ YL    K +    P ND+     ++L +
Sbjct: 243  IVGKE--LLDILLPSFEEAISKKIFREEQAILYLSKFAKIN----PENDKIDEVRTVLSE 296

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM---DDKDYVGNKRLELSGQLVSL 378
              L N+   +   R K  YV +M+R++    +NK  +   DDKDY+GNKR EL+GQL+ +
Sbjct: 297  RILPNIEF-DYTLRKKGVYVCLMIRKLA---MNKAGIIGPDDKDYMGNKRFELAGQLLGI 352

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF--IVRDSITVGLERTLSTGNFDVKR 436
            LFED FK    E++K++D ILSK +R+S FD   F  +   SIT  L R +STGN+++KR
Sbjct: 353  LFEDSFKKFNYELKKSIDKILSKRTRTSEFDALTFFNLQTSSITSSLTRAISTGNWNLKR 412

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
            F+M R G++ ++ R S++  LG MT+++  FEK+RKVSGPR+L  S WGMLCP DTPEGE
Sbjct: 413  FRMERSGVSSIITRYSYVCALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGE 472

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            +CGLVKNLAL+  +TTD +   +  +    GV  +E+  G+E +  N+ LV  NG I G 
Sbjct: 473  SCGLVKNLALLAEITTDSDPKIIEKVLMEYGVRKIEICYGKEFYQKNNHLVFINGGIFGI 532

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG------ 610
              +P    ++ RK RR GKI +FVS++ N  ++ VY+++D GR+ RP++I D+       
Sbjct: 533  VSQPGILVNLFRKRRRCGKIDKFVSIYTNSDEKSVYVSTDNGRISRPVIILDQSKALTAK 592

Query: 611  --ISRIKEHHMKELLDGV------------------------RSFDDFLREGLIEYLDVN 644
              I R+K+H  ++    V                        +SF D + EG IEYLD+N
Sbjct: 593  SLIERLKKHRARDNYTEVHDHDAESQLLIHLGIYFDKESLRYKSFSDLINEGKIEYLDIN 652

Query: 645  EENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            EENN +IA    +   +TTH+EI  F ILG IAGL+P+PHHNQSPRNTYQCAMGKQA+G+
Sbjct: 653  EENNCMIAFTASEINENTTHLEISEFAILGYIAGLVPFPHHNQSPRNTYQCAMGKQAIGH 712

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
            IA N   R DS +  L Y QRP+ +++T++++ Y+++ +G NA VAVMSYSGYDIEDA++
Sbjct: 713  IAANVKRRFDSAILQLNYTQRPIASSKTLDIIKYNQIPSGFNAMVAVMSYSGYDIEDAVI 772

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +N+ S+DRG  R  V K  T + +KY++  SD+++                         
Sbjct: 773  LNQGSVDRGMARVEVYKTNTIVLKKYSSGQSDKLV------------------------- 807

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
              DG+ +PG+ +    V +NK SP+            T S+++          G    ++
Sbjct: 808  -GDGVISPGKYVVDGTVLVNKISPI--------TNTLTSSKHK----------GHPAHIE 848

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V +   ++  + IK + R TR PE+GDKFSSRHGQKGV G IV Q D PF+E+G+ PD+
Sbjct: 849  KVMISKSEDESI-IKVVTRETRSPEVGDKFSSRHGQKGVVGLIVPQVDMPFNEQGLAPDI 907

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            IMNPHGFPSRMTVGK+IELL GKA +  G++   +AF +     + +    + L K G+S
Sbjct: 908  IMNPHGFPSRMTVGKIIELLSGKAAMIEGKYADATAFKK-----NQIRDFCDVLAKSGYS 962

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            Y+GKD+  SG TG  L+AYIF GPI+YQ+LKHMV DKMH R  GPR +LTRQPTEGR+ +
Sbjct: 963  YSGKDIFTSGTTGEQLEAYIFYGPIFYQRLKHMVADKMHCRARGPRAILTRQPTEGRSND 1022

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR+GEMERDCLI YG S L+ ERLMVSSD FE  +C+ CG++GY  H      C  CK
Sbjct: 1023 GGLRLGEMERDCLIGYGTSALLNERLMVSSDIFEAFICKDCGVVGYKGH------CPMCK 1076

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
              + +  +K+PYACKLL QEL SMNI+P+++L
Sbjct: 1077 KSNPV-PIKIPYACKLLFQELMSMNILPKVEL 1107


>gi|300709367|ref|XP_002996849.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
 gi|239606175|gb|EEQ83178.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
          Length = 1091

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1146 (46%), Positives = 727/1146 (63%), Gaps = 86/1146 (7%)

Query: 33   QLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSM 92
            +L+ +F   +GL +QH++SFNYF+N  I  IV+AND + S ID + +L++ DVRI  PS+
Sbjct: 8    ELIKKFFFEKGLARQHIESFNYFINHEIASIVKANDIVDSDIDHTFYLKYTDVRISVPSL 67

Query: 93   TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCR 152
              + +   L P  CRL D+TYA+ + ++IEYV+     K  + K DV IGRIPIML+S +
Sbjct: 68   EENMIKHTLYPMECRLRDLTYASNLYIDIEYVRN----KQIIRKKDVFIGRIPIMLQSDK 123

Query: 153  CVLYGKDE----------AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            C+L  K+           A L    ECP D GGYFIIKG EKV+LIQEQLSKNR+II+  
Sbjct: 124  CLLKSKNNEQKLSEESLNANLFFSQECPYDIGGYFIIKGIEKVILIQEQLSKNRIIIEDG 183

Query: 203  KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
             KG   +S+TSST   KSKT +  +    YL+ + F + IP++ ++KA  M SD+E+V+ 
Sbjct: 184  PKGFF-SSMTSSTHEQKSKTSVIYKNDCYYLVNSSFSEDIPVVAIIKACNMISDKEIVEC 242

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
            +G++  ++  ++ S EE     I+T ++A  YL G +K      P  ++     +++ + 
Sbjct: 243  IGKE--FADQIVLSFEEIYKHKIHTSKEAALYLAGFIKMK----PDANKLEEVRNVIVEK 296

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L NV     + R K   + +M+RR++    N    +DKD++GNKR EL+GQL+S+LFED
Sbjct: 297  ILPNVKFDGVDLRNKGIMICLMVRRLIFTQKNIITEEDKDFIGNKRFELAGQLLSILFED 356

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQF--IVRDSITVGLERTLSTGNFDVKRFKMH 440
             FK    E+++++D IL+K  R+  FD   F  +  + IT  ++R +S+GN++++RF+M 
Sbjct: 357  SFKKFNWELKRSIDKILTKRLRAQEFDALTFFNLQTNIITTSMQRAISSGNWNLRRFRMD 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G+T VL R S+I  +G MT+V+  FEK+RKVSGPRAL  S WGM CP DTPEGE+CGL
Sbjct: 417  RSGVTHVLIRHSYISAVGMMTKVNSHFEKTRKVSGPRALHTSSWGMFCPADTPEGESCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNL+L+  VTTD +   +I +   LGV    +L   E+ +   +LV  NG I G  +  
Sbjct: 477  VKNLSLLAEVTTDSDLDTIIYILSSLGVIQTGVLYTHEMVSDEMYLVFLNGDIFGVTQ-- 534

Query: 561  KCFADV--MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA--------DKG 610
             CF  V   R  RR G I ++VS++++E  + V IA+D GR+CRPL+I          KG
Sbjct: 535  NCFGLVKNFRNYRRKGVINKYVSIYIDENLKSVNIAADNGRLCRPLIIITDEVRQNLKKG 594

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPF 670
            +  I +  MK      +SFDD + +G IEYLD NEEN+ALIAL   D +  TTH+EI  F
Sbjct: 595  LFVISDLEMK-----YKSFDDLVEDGRIEYLDANEENDALIALKIEDISDKTTHLEIADF 649

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILG +AGLIP+P+HNQSPRNTYQCAMGKQA+G IA N   R D +   L   Q+PL TT
Sbjct: 650  AILGYVAGLIPFPNHNQSPRNTYQCAMGKQAIGYIALNSKKRFDGISLQLCNTQKPLTTT 709

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            + + +  Y+++ AGQNA VAVMSYSGYDIEDA+++NK SLDRGF R  V K +  + +KY
Sbjct: 710  QILNITDYNEIPAGQNAMVAVMSYSGYDIEDALIINKDSLDRGFARTEVYKTHCYVLKKY 769

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
            +++ SD IL PD   P                ILD DG+  PGE++    VYINK SP E
Sbjct: 770  SDNRSDVIL-PDIKNP----------------ILDKDGIGKPGELLLEGTVYINKNSPCE 812

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                         + Y+     +K   G    +DRV +   ++  L IK  +R TR PE+
Sbjct: 813  -------------NGYKFTGGVHK---GNPAFIDRVLITKSEDQTL-IKICLRQTRVPEI 855

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKFSSRHGQKGV G IV Q + PF++ G+ PD+IMNPHGFPSRMTVGK+IELL GKAG+
Sbjct: 856  GDKFSSRHGQKGVVGLIVPQINMPFTDSGLVPDIIMNPHGFPSRMTVGKIIELLTGKAGI 915

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+    + F +     + V+ + + L  +GF++ GKD  YSGI+G P+ AYIF GP++
Sbjct: 916  IEGKISDATIFKK-----NEVDLVCDILSNNGFNFGGKDCFYSGISGEPIYAYIFYGPVF 970

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+LKHMV DK+H R  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGAS LI ERL
Sbjct: 971  YQRLKHMVADKIHMRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIGYGASSLIVERL 1030

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            M SSD FE   C+ CG+L   N       C+ C N  N   ++LPYACKLL QEL SMNI
Sbjct: 1031 MESSDLFETFCCKNCGILVPKNG------CNVC-NDTNPLPIRLPYACKLLFQELMSMNI 1083

Query: 1151 VPRLKL 1156
            +P+L +
Sbjct: 1084 LPKLNV 1089


>gi|403222729|dbj|BAM40860.1| DNA-directed RNA polymerase III [Theileria orientalis strain
            Shintoku]
          Length = 1220

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1229 (42%), Positives = 769/1229 (62%), Gaps = 124/1229 (10%)

Query: 16   PDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSG 73
            PD+  L   VK + DK+++LP +L +RG+ +QH++S++ FV   I+ I+RA  N  I + 
Sbjct: 21   PDE--LYDSVKEIKDKWKILPYYLGMRGIARQHINSYDNFVLREIKDIMRAPSNKVIRTE 78

Query: 74   IDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
            +DP+ F+ F D+R+G+P +  + +   L P MCR+ D+TY+API V+++YV+G    +  
Sbjct: 79   LDPNFFIEFVDIRVGRPCIEENMIPIMLTPQMCRIRDLTYSAPIYVDVDYVRG----QEY 134

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            + KN++ IGRIP+MLRSC C L   +   L  L ECP DPGGYFIIKG EKV+L+QEQLS
Sbjct: 135  IRKNNLEIGRIPVMLRSCICAL--SENVSLKSLKECPYDPGGYFIIKGVEKVILMQEQLS 192

Query: 194  KNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
            K+R+I++ D K NI A+VTS+T   KS+T +  +  ++Y+  N     +P+ +++KAMG+
Sbjct: 193  KSRIIVEMDNKKNICATVTSATAESKSRTAVTYKNSQLYVKHNSLTDDVPLCIILKAMGV 252

Query: 254  ESDQEVVQMV--------GRDPRYSAL--------LLPSIEECANLDIYTQEKALEYLEG 297
            E+DQE+ Q++         RD   S           +  + +    +I ++  A+ +   
Sbjct: 253  ETDQEIAQLISNSSENNPNRDETMSGTQNYNNTDDYVIFLNDLYKENINSRLDAILFTGK 312

Query: 298  KVK---------RSTFGSPPNDRE---GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVM 344
            K++          S    PP   +        +L  V L+++P+ ++ +F  K   +++M
Sbjct: 313  KIRPRIIAKGFYTSNKERPPKTTQMMIEETHDLLCRVLLSHIPMRDSTDFSGKIKTLSLM 372

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILS 400
              R++  + N + +DDKD+ GNKRLEL+GQ++S+LFEDL+K  +     ++++T++  ++
Sbjct: 373  AHRVLNVVNNVEPLDDKDHYGNKRLELAGQMISILFEDLYKKFLFHLKKQIEQTLERYIA 432

Query: 401  KPSRSSRF------DLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFI 454
              + S R       D+ + +  D +T G+   +STGN+++KRF+M R G++QVL+RLS+I
Sbjct: 433  SKTNSHRDSAIPYPDILRNLPTDILTRGMTTAISTGNWNIKRFRMERSGVSQVLSRLSYI 492

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             ++G MTR + QFEK RKVSGPRALQPSQ+G++CPCDTPEGE+CGLVKNL+LMTHVT+D 
Sbjct: 493  SSIGMMTRTNSQFEKGRKVSGPRALQPSQFGLICPCDTPEGESCGLVKNLSLMTHVTSDV 552

Query: 515  EEGPLISLCYCLGVEDLELLSG-----------EELHNPNSFLVIFNGLILGKHRRPKCF 563
                L +L + LGVE ++ +S            EE  + +  LV+ NG++LG H++ K  
Sbjct: 553  PSSILETLLFTLGVEPIDTVSSYDLFHSLNTGTEEAKDEDFRLVLLNGVLLGVHKKVKLL 612

Query: 564  ADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL 623
             D + KLRR G I  FVSV+ N +Q+ ++++SDGGR+CRPL++   G  ++ +  +++LL
Sbjct: 613  VDGIIKLRRKGLINMFVSVYENYQQKQIHVSSDGGRLCRPLIVVQNGKPKLTDEILQKLL 672

Query: 624  DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYP 683
                + D     G++E++DVNEENN LI + E D    TTH+EI P +ILGV+AGLIP+P
Sbjct: 673  LNKINIDYLFNNGILEWIDVNEENNLLIVMREKDINHMTTHLEISPMSILGVVAGLIPFP 732

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
            +HNQSPRNTYQCAMGKQ++G+I +NQL R D++++L+ Y Q PL+TT+TI+LV +DKL A
Sbjct: 733  NHNQSPRNTYQCAMGKQSIGSIGYNQLHRCDTIVHLMNYTQVPLVTTKTIQLVNFDKLPA 792

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQNA VAVMSY GY+IEDAI++N++S+DRGF RC  +K  +        + S       R
Sbjct: 793  GQNAIVAVMSYQGYEIEDAIILNRASIDRGFSRCFTLKNISCEITNATPNDSSGYHNSGR 852

Query: 804  TG-----PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI--- 855
             G     P A +  V+                  GE + P  V I+     +   S    
Sbjct: 853  EGFKDKDPNANKEYVI----------------GVGERVLPGQVLISTRDNRDFAASYGNV 896

Query: 856  -------MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                    S  G+ D   R+   ++K     +  +DR+ L    NG+   K ++R +R P
Sbjct: 897  NADKYDKSSAGGKED---RAKYMSFKYNLNASGHIDRIILTESSNGNRLYKVIVRQSRPP 953

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            E+GDKFSSRHGQKGV G I + ED PF+E G+ PDL+MNPHGFPSRMTVGK++EL+  K+
Sbjct: 954  EIGDKFSSRHGQKGVVGLIAEPEDMPFTESGMVPDLVMNPHGFPSRMTVGKLLELVASKS 1013

Query: 969  GVSCGRFHYGSAF---------------GEPSG--------HADTVESISETLVKHGFSY 1005
             V  GRF   + F               G  SG          D +  I   L+K GF  
Sbjct: 1014 SVLSGRFVDSTPFSNSYSNNHQGGGGDEGTDSGGYENLGNDAQDNINEICNILIKKGFHP 1073

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             GK+++YSGITG  +   IF GPIYYQ+LKHMV+DK+HAR  GPR MLTRQPTEGR+++G
Sbjct: 1074 KGKEVLYSGITGNLINTLIFFGPIYYQRLKHMVMDKIHARSRGPRQMLTRQPTEGRSKDG 1133

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR+GEMERDCLIAYGAS L+ ERLM+SSD + +QVC  CG +GY N+      C  C+N
Sbjct: 1134 GLRLGEMERDCLIAYGASNLLIERLMLSSDVYNIQVCNCCGFMGYNNY------CKFCRN 1187

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              ++  + +PYACKLL QELQ+MNI P L
Sbjct: 1188 -RSLVQVTIPYACKLLFQELQAMNIKPSL 1215


>gi|300123537|emb|CBK24809.2| unnamed protein product [Blastocystis hominis]
          Length = 1056

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1048 (47%), Positives = 690/1048 (65%), Gaps = 37/1048 (3%)

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPILVNI 121
            + AN  I S ++   F+R++ + +G+P +  D   ++ K+ P  CR   +TY+API  +I
Sbjct: 1    MEANKEIRSDVNHKFFVRYEKIEVGEPMVLEDSSIINNKITPMECRKRSLTYSAPIFADI 60

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
             Y  G       + +  V IG+IPIML SC+CVL  K  AELA + EC  DPGGYFI+KG
Sbjct: 61   IYTLGD-----KIIRKKVRIGQIPIMLHSCKCVLRNKSPAELAAMQECLYDPGGYFIVKG 115

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241
             EKVLL  EQ+SKNRV+ D +  G I  +VTSST   KS+  +  +KGK+YL  N F K 
Sbjct: 116  NEKVLLSGEQMSKNRVLCDINDDGTIVVNVTSSTAERKSRCYVLEKKGKLYLKHNVFTKD 175

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK- 300
            IPI +  + MG+ESDQE++ ++G +P+Y      SIEE   L I+TQ++AL+++   V  
Sbjct: 176  IPICIAFRCMGIESDQEIMALIGNEPKYRTYFNQSIEEAHELGIFTQQQALKWVGSLVSM 235

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            R    S     E     +     L +VPV   +F PKC Y+A M R  ++ + +   + D
Sbjct: 236  RKGRWSRKRSAEEEGREVFNTTILCHVPVVRYDFWPKCVYLAYMTRECLQCIFDHSLLSD 295

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD----LSQFIVR 416
            KDY GNKR+E +G L+SLLFEDLFK   ++V++ V+  L K +R + FD    + QF   
Sbjct: 296  KDYYGNKRIETAGDLMSLLFEDLFKMYNAKVKEFVNKSLQKTTRVNAFDVVPVMQQF--H 353

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
            D IT G    + +GN+ +KRF + RKG+ + + RLS+I  +GHMTR+    EK++K+SGP
Sbjct: 354  DIITNGCVNAIKSGNWVLKRFHIDRKGVAEPVTRLSYIAAIGHMTRIRSHVEKAQKISGP 413

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            RALQPSQ+GM+CP DTPEGE CGLVK+L ++ ++T D++E  L  + Y LGV D+ L   
Sbjct: 414  RALQPSQFGMVCPSDTPEGEQCGLVKSLTILAYITIDQDEKALRQVAYDLGVLDVGLFGA 473

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
            EEL+   + LV  NG +LG H +P+     +R+LRR G +G FVSV+ +  +RCV+++ D
Sbjct: 474  EELYARPASLVFLNGGLLGVHSQPQALVRGVRQLRRRGLLGAFVSVYYDRIRRCVHLSCD 533

Query: 597  GGRVCRPLVIADKGISR--IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            GGR+CRPL++ ++   R  + + H   +  G  +  + +R G+IEY+DVNEEN+ LIA+ 
Sbjct: 534  GGRICRPLLVLNRETGRPFLTKAHTDGIRRGTITIQELVRAGVIEYIDVNEENSCLIAVT 593

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            + D TP  TH+EI+P +ILG++A LIPYP HNQSPRNTYQCAMGKQA+G +A NQ  R+D
Sbjct: 594  DKDITPAHTHMEIDPVSILGIVASLIPYPDHNQSPRNTYQCAMGKQAIGTVACNQQQRVD 653

Query: 715  -SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
             S L ++VYP  P++ +R ++L+ + +L AGQNA VAVMSYSGYDIEDA+V+N++S+DRG
Sbjct: 654  VSPLNVMVYPMMPMVRSRVLDLLHFSQLPAGQNAMVAVMSYSGYDIEDAVVLNRASIDRG 713

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL----ILDDDGL 829
            +GR ++ KK     +KY N +SD I  P R     ++  +  H+   L      L  DG+
Sbjct: 714  YGRVVISKKQVFSLKKYPNGSSDLIKGPPRR---EDQKNIDDHTWNRLFEPYKALGSDGI 770

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
               G  I P D+ +NK  P++T GS     G    + R+A   YK   G    VD+V + 
Sbjct: 771  VESGVPIHPGDIMVNKHVPMDT-GSF----GADRDQLRAAPVKYKESGG---YVDKVLIT 822

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
            +  N    IK ++R  RRPELGDKFSSRHGQKGV G I  QE+ PFS  GI PD+IMNPH
Sbjct: 823  TTDNEYFVIKTMVRDMRRPELGDKFSSRHGQKGVVGLITGQENLPFSTAGIYPDMIMNPH 882

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
            GFPSRMTVGKM+ELL GKAG+  G   +G+ FG        +E  +E L++HGF+Y+GKD
Sbjct: 883  GFPSRMTVGKMMELLAGKAGLWDGERKFGTIFG-----GTDIEDCAEELIRHGFNYSGKD 937

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            + YSGITG PL+AYIF GP+YYQ+LKHMV DK+ AR  GPR+ LT QPT+GR+R+GGLRV
Sbjct: 938  LFYSGITGEPLRAYIFTGPVYYQRLKHMVKDKVFARAKGPRMALTHQPTQGRSRDGGLRV 997

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPF 1097
            GEMERDCL+A+G SML+ ERL++SSDPF
Sbjct: 998  GEMERDCLVAHGTSMLLIERLLLSSDPF 1025


>gi|145521170|ref|XP_001446440.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413918|emb|CAK79043.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1131

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/1154 (45%), Positives = 723/1154 (62%), Gaps = 59/1154 (5%)

Query: 28   VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRFKDV 85
            + +K +L+  +L  RGL KQH+DSFNYF+   + +IV++  N RI    D S  L +  +
Sbjct: 2    ISEKDKLITSYLSFRGLQKQHIDSFNYFIEQRLEQIVKSPLNQRITCESDSSFLLEYLSI 61

Query: 86   RIGQPSMT--VDGVSEK--LNPHMCRLSDMTYAAPILVNIE-YVQGSHTEKTTMEKNDVV 140
            R+  P+ T   D  S K  L PH CRL+D TYA  I VN+  +++G    +  +E+ DV+
Sbjct: 62   RVENPTFTSSWDKYSLKSLLYPHECRLNDQTYAGDIYVNVRIHMKG----REPIEEKDVL 117

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IGR+PIML S +C L GK EAE+ + GECP DP GYFII+G EKV+LI EQ+  NR+I+D
Sbjct: 118  IGRMPIMLGSKKCNLSGKTEAEIFQYGECPYDPKGYFIIEGNEKVILILEQVVDNRIIVD 177

Query: 201  TDKKGNINASVTSSTE-TVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
             D K +   S   S +   KSK  I ++K K Y+  + F K  P+ +V KA+G+ +D+E+
Sbjct: 178  VDNKTDQYVSTVQSYQLETKSKASIILKKNKFYVKSSSF-KDAPLFIVFKALGIVNDKEI 236

Query: 260  VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSIL 319
            ++++G +P     LL S ++ ++  I TQ  AL+Y+ GK+  S FG   ++   +A   L
Sbjct: 237  IELIGTEPSIVEKLLMSFQDSSDEKIKTQLDALQYI-GKLITSKFGGQSSNLADQAREKL 295

Query: 320  RDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLL 379
              VFLA+V     +F PK  Y+  M+RR++ AM +K  +DDKDY GNKR+  +G L+ LL
Sbjct: 296  AQVFLAHVNCKKYDFYPKAIYLGQMVRRLILAMEDKRFVDDKDYYGNKRMRCAGNLLELL 355

Query: 380  FEDLFKTMISEVQKTVDIILSKPS-----RSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            FEDLFK + S +   +   L K +     +     + +F V   IT GL R + TG + +
Sbjct: 356  FEDLFKGLNSTISSILKKELGKANCKFTPKDVTMKMKEFGV--DITKGLNRAIKTGKWTI 413

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            +RF M R+G+TQ+LAR+S+   LG +T++  Q +K+ KVSGPRAL  SQ+GM+CP DTP+
Sbjct: 414  QRFHMDRQGVTQLLARISYTSALGMLTKMRSQVQKTLKVSGPRALVGSQFGMICPADTPD 473

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            GE CGLVK LAL+TH+T ++ +  +  +   +GVED+      E H   +++V  NG+I+
Sbjct: 474  GEDCGLVKTLALLTHITQEDIQDSVYKIILSMGVEDICHFKPSEFHK--NYIVYLNGIIV 531

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G H RP+ F D +R LRR GKI EFVS+  ++ ++ V I+ D GR+ RPL++   G  ++
Sbjct: 532  GMHARPQEFVDQLRILRRRGKINEFVSIHKDDLRKVVNISGDSGRLVRPLILVKDGKPQL 591

Query: 615  KEHHMKELL--DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             +  M +    D    F  F++ G IEYLDVNE +NA IAL   D T +TTH+EI+  TI
Sbjct: 592  IQIDMIDFKQNDAKTVFSSFVKNGKIEYLDVNESDNAFIALTINDVTMETTHLEIDQMTI 651

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            L  + GL+P+PHHNQS RNT+QC MGKQ++G I  N   R D+ LY L+YPQ PL+ T +
Sbjct: 652  LSCVTGLVPFPHHNQSARNTFQCQMGKQSLGIIGMNTQIRCDTQLYQLIYPQTPLVRTVS 711

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA---INQK 789
            +E V   +L AG NA VAVMSYS YDIEDA++MNKSSLDRGFGR  V KK      INQ+
Sbjct: 712  MEAVNQHRLPAGHNAQVAVMSYSCYDIEDALIMNKSSLDRGFGRTAVYKKSVTECEINQR 771

Query: 790  YANST-SDRILR-PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
               S  ++RI   P +T    ++    +H+      LD+DG+   G  +   D+Y+NK++
Sbjct: 772  NKESRFNERIDEPPTKTHNTKKKFIKKYHA------LDNDGITKVGAQLHHGDIYVNKKT 825

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL----CIKFLIR 903
            P         P        + A       +     VDRV + ++ N        IK + R
Sbjct: 826  P-------QVPDNPQTENIQIADTPSVFKEKWPYTVDRVLIINNTNDGTEKIKTIKTIFR 878

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              RRPE GDKFSSRHGQKGV G IV QED PF+ERG CPDLIMNPHG+PSRMT+ K++EL
Sbjct: 879  QIRRPEFGDKFSSRHGQKGVVGLIVNQEDMPFNERGWCPDLIMNPHGYPSRMTIAKLMEL 938

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            L GK G   G+F YG+AFG      + V  + E L+K GF Y GKD + SGITG  ++ Y
Sbjct: 939  LCGKLGALEGKFKYGTAFG-----GENVLQVGEELLKRGFHYQGKDCLISGITGEYMECY 993

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            ++ GPI+YQ+LKHMV+DK+HAR  GP   LTRQP EGRA++GG R+GEMERDC +AYGAS
Sbjct: 994  VYQGPIFYQRLKHMVIDKIHARAKGPMEKLTRQPVEGRAKDGGQRIGEMERDCFLAYGAS 1053

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
             L+ ERL++SSDPF V VC +CG+           +C  C N D +  ++LPY CKLL Q
Sbjct: 1054 NLLIERLLISSDPFNVYVCEICGMFK------SDSVCRGC-NTDKVYQIRLPYCCKLLFQ 1106

Query: 1144 ELQSMNIVPRLKLA 1157
            EL +MNI P+L+L 
Sbjct: 1107 ELLAMNIKPKLQLV 1120


>gi|355712756|gb|AES04455.1| polymerase III polypeptide B [Mustela putorius furo]
          Length = 736

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/754 (60%), Positives = 560/754 (74%), Gaps = 22/754 (2%)

Query: 407  RFDLSQFIVRDSITVG--LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            +FD+ + + +D IT G  +   +STGN+ +KRFKM R+G+TQVL+RLS+I  LG MTR+S
Sbjct: 1    QFDVVKHMRQDQITNGNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRIS 60

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
             QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TTD E+GP++ L  
Sbjct: 61   SQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAG 120

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
             LGVED+ LL GEEL  PN FLV  NG ILG  R  +   +  R +RRAG I EFVS+  
Sbjct: 121  NLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHRKLVNTFRLMRRAGYINEFVSIST 180

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVN 644
            N   RCVYI+SDGGR+CRP +I  K    +   HM+EL  G R+F+DFL E L+EYLDVN
Sbjct: 181  NLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVN 240

Query: 645  EENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            EEN+  IALYE     DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG 
Sbjct: 241  EENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 300

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
            I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V
Sbjct: 301  IGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALV 360

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +NK+SLDRGFGRC+V K      ++Y N T D+++ P      A R  +  H      IL
Sbjct: 361  LNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGP--MLDAATRKPIWRHE-----IL 413

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D DG+ +PGE ++   V +NK  P  T+  +         +Y+    TYKG       ++
Sbjct: 414  DADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKG--ATDSYIE 471

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V + S+      IK L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD+
Sbjct: 472  KVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDI 531

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG+AFG        V+ + E LV+HG++
Sbjct: 532  IMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGYN 586

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+
Sbjct: 587  YLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 646

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK
Sbjct: 647  GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCK 700

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            +  ++SS+++PYACKLL QELQSMNI+PRLKL++
Sbjct: 701  SSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 734


>gi|170037347|ref|XP_001846520.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167880429|gb|EDS43812.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 928

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/912 (51%), Positives = 637/912 (69%), Gaps = 40/912 (4%)

Query: 26  KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDV 85
           K++ DK++L+P FL+++GLVKQH+DSFNYF+N  I+ IVRAND + S  DP  +L++ +V
Sbjct: 20  KTLEDKWKLVPAFLQIKGLVKQHIDSFNYFINVDIKNIVRANDEVKSDADPCFYLKYLNV 79

Query: 86  RIGQPSMTVDGV--SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
            IG P +  +G   ++   PH CRL DMTYAAPI V+IEY +G+      + +N ++IGR
Sbjct: 80  AIGMPDVE-EGFNNTKSTTPHECRLRDMTYAAPITVDIEYTRGTQR----VVRNGLLIGR 134

Query: 144 IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
           +PIMLRS  CVL GK E EL+++ ECPLDPGGYF+I+GTEKV+LIQEQ+S N+++ + D 
Sbjct: 135 MPIMLRSSNCVLSGKSEYELSKVNECPLDPGGYFVIRGTEKVILIQEQVSWNKMLTE-DY 193

Query: 204 KGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              I   VTSST   KS+T++  + GK YL  N   ++IP+ ++ KAMG+ SDQE++Q+V
Sbjct: 194 NNVIQCQVTSSTHEKKSRTILLSKHGKYYLKHNSMTEEIPVAIIFKAMGIASDQEIMQLV 253

Query: 264 GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE---GRAFSILR 320
           G D      L PS+ E AN  +YTQ++ALEY+  K+    F +     +     A  +L 
Sbjct: 254 GIDTETQKRLAPSLLEAANHKVYTQQRALEYMGSKLIAKRFTTAATKYKTTADEARDLLA 313

Query: 321 DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
              LA+VPV+N NF+ K  YVA+M+RR++ A L++ A+DD+DY GNKRLEL+G L+SL+F
Sbjct: 314 TTILAHVPVNNFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMF 373

Query: 381 EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
           EDLFK    E++   D  + K  ++++FD+ + +    I+ GLE  +STGN+ +KRFKM 
Sbjct: 374 EDLFKRFNWELKMIADKNIPK-IKAAQFDIVKHMRAALISTGLETAISTGNWTIKRFKME 432

Query: 441 RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
           R G+TQVL+RLS+I  LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGL
Sbjct: 433 RAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGL 492

Query: 501 VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
           VKNLALMTH+TT+ +E P+I L Y  GVED+ LL GE ++NP  F+V  NG ILG     
Sbjct: 493 VKNLALMTHITTEVDEEPVIRLAYNSGVEDIRLLGGETINNPKVFMVFINGNILGVTIMY 552

Query: 561 KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
           K   +V R +RR G IG FVS+  +  QRCVYI +DGGR+CRP +I   G   +K+ H++
Sbjct: 553 KRLVEVFRMMRRKGLIGSFVSIHTSFSQRCVYIHTDGGRLCRPYIIVQNGQPLVKQEHIE 612

Query: 621 ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGL 679
           +L  G+R FDDFL +GLIEYLDVNEEN++ IA  E D  P+ TTH+EIEPFT+LGV AGL
Sbjct: 613 QLKVGLRKFDDFLHDGLIEYLDVNEENDSFIAYQELDIDPEKTTHLEIEPFTLLGVCAGL 672

Query: 680 IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
           +PYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y +VYPQ P++ +RTIEL  +D
Sbjct: 673 VPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTNFD 732

Query: 740 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
           KL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GRC+V K      ++Y+N T DRI+
Sbjct: 733 KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIM 792

Query: 800 RPDRTGPGAERMQVVHHSNLLLL---ILDDDGLAAPGEIIKPNDVYINKE-------SPL 849
                GP  + +     +N ++     LD DG+ +PGE +      +NKE       +P+
Sbjct: 793 -----GPMKDSL-----TNKIIFRHECLDTDGIISPGEKVSSKQTMVNKEMPAVKSINPI 842

Query: 850 ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
           E + S     GQ    Y     TYKG   E   +++V + ++ + +  +K L+R TRRPE
Sbjct: 843 EQKES-----GQQPIAYSGVPITYKGT--EPSYIEKVMVSTNNDEEFLVKILLRQTRRPE 895

Query: 910 LGDKFSSRHGQK 921
           +GDKFSSRHGQK
Sbjct: 896 IGDKFSSRHGQK 907


>gi|269859858|ref|XP_002649653.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
 gi|220067016|gb|EED44485.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
          Length = 1107

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1161 (42%), Positives = 716/1161 (61%), Gaps = 97/1161 (8%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMT 93
            L+  F   + LV+QH++SFNYF+   I++IV+AND I S ID + +LR+ ++R+ +P+M 
Sbjct: 7    LVDLFFADKNLVRQHIESFNYFIEKEIKEIVQANDIIDSDIDRNFYLRYLNIRVEKPTMI 66

Query: 94   VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRC 153
             + V + + P  CR+ D+TYA  I V+IEY++     K  + K ++ +G++PIM+RS +C
Sbjct: 67   ENMVEQIIYPQECRIRDITYAGNIYVDIEYIKN----KEVIIKKNISMGKMPIMIRSSKC 122

Query: 154  ----------VLYGKDEAELA--RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT 201
                      ++  + +  L   +  EC  D GGYFIIKG EKV+ IQEQ SKNR+II+ 
Sbjct: 123  HLTTHMLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQSKNRIIIEM 182

Query: 202  DKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             K G +  S+TSS+   K+KT +  +  K Y+    F++ +PI++V+K +G+ +D+E+V 
Sbjct: 183  GKNG-LYTSMTSSSIKHKNKTNVIYKNDKFYIQNTIFIEDVPIVLVLKTLGLNTDEEIVS 241

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             +G++     L+  S  E    DIYT+  AL  L   +K  +     +++E +  SIL +
Sbjct: 242  YIGKEG--VELMELSFGEVYEKDIYTETDALIELSKFIKLKS----DDNKEIKVKSILAE 295

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
                N+ + +++ + K   + +M+R+++ A  N    DDKDY+GNKR EL+GQL+S+LFE
Sbjct: 296  KLFPNIKI-DDDLKNKGICLCLMIRKLILAKQNLLKPDDKDYLGNKRFELAGQLLSILFE 354

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQF--IVRDSITVGLERTLSTGNFDVKRFKM 439
            D FK    E++K++D ILSK  R++ FD   F  +   SIT  L R +S+GN+++KRFKM
Sbjct: 355  DTFKKFNFELKKSIDKILSKRIRTNEFDALTFFNLQTGSITTTLSRAISSGNWNLKRFKM 414

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             R G+T VL R S+I  LG MT+++  FEK+RKVSGPR+L PS WGM CP DTPEGE+CG
Sbjct: 415  ERSGVTHVLTRYSYITALGMMTKINSHFEKTRKVSGPRSLHPSSWGMFCPADTPEGESCG 474

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLAL+T ++T+ +   + ++   LGV  L+     E +  N F+V  NG + G    
Sbjct: 475  LVKNLALLTEISTESDSDIIKNILQTLGVIKLKFCQESEFYAKNKFMVFINGELFGLTSN 534

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM 619
             +     +RK+RR GKI +FVS+F N+ +  +YI++D GR+CRPL+I  K  +    +  
Sbjct: 535  IEYLCCAIRKIRREGKINKFVSIFHNKLENAIYISTDNGRICRPLIIIKKNSNFFTNYQF 594

Query: 620  KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT----PDTTHIEIEPFTILGV 675
            +      +SF+D L EGLIEY+DVNEEN+ LIAL++ +       + TH+EI  ++IL +
Sbjct: 595  QCNKIKYKSFNDLLLEGLIEYVDVNEENDCLIALHKSNINNLNIENYTHLEIADYSILSL 654

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            IAGLIP+PHHNQSPRNTYQCAMGKQA+G+I  N   R D L+  L Y QRPL  ++ +++
Sbjct: 655  IAGLIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKKRFDLLMLQLNYTQRPLSCSKILDI 714

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
              Y+K+ AG NA VAVMSYSGYDIEDAI++NK S++RGF R  V K      +++ N  +
Sbjct: 715  NKYNKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRVEVYKTIKIEFERFTNGKT 774

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            + I   +    G E++  V                  G  +   D+ I K SP+      
Sbjct: 775  EEIYIVN----GKEQIIEV------------------GTHVMDGDILITKVSPI------ 806

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                   D + ++ +  YKG  G    +D + L S  + D  +K  +R TR  E+GDKFS
Sbjct: 807  -------DKKLKTVK--YKGHPG---YIDTIIL-SKGDDDKILKIKVRETRCVEIGDKFS 853

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV Q D PF+E G+CPD+IMNPHGFPSRMTVGK++EL+G K     G +
Sbjct: 854  SRHGQKGVVGLIVPQVDLPFNEYGVCPDIIMNPHGFPSRMTVGKILELIGSKVTCLTGEY 913

Query: 976  HYGSAFGEPSGHAD------------------TVESISETLVKHGFSYNGKDMIYSGITG 1017
               + F   +   D                    E + + L+ HG+SY+GKD+  SGITG
Sbjct: 914  TDATPFENNTADNDLKTIFNTTNQEPLHKEHRQTELLCQILIDHGYSYSGKDVFTSGITG 973

Query: 1018 CPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCL 1077
               +AYIF GPI+YQ+LKHMV DK+H R  GPR +LTRQPTEGR+++GGLR+GEMERDCL
Sbjct: 974  EQFEAYIFFGPIFYQRLKHMVADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGEMERDCL 1033

Query: 1078 IAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYA 1137
            I YGA+ L+ ERLM  SD F+  +C  CG++ Y         C  C     I  +K+PYA
Sbjct: 1034 IGYGANSLLNERLMHCSDEFDAFICETCGIICYKER------CYWCSKKPII--VKMPYA 1085

Query: 1138 CKLLIQELQSMNIVPRLKLAE 1158
            CKLL QE+ +MNI+P++ L +
Sbjct: 1086 CKLLFQEMMAMNILPKIILEK 1106


>gi|378754668|gb|EHY64698.1| RNA polymerase [Nematocida sp. 1 ERTm2]
          Length = 1088

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1169 (42%), Positives = 727/1169 (62%), Gaps = 114/1169 (9%)

Query: 18   KQKLAAPVKSVVDKFQLLPE-FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            +++   P      ++ L  E FL  +GL + H++SFN+FV   I+ ++R N+ I S +D 
Sbjct: 6    REQAGLPYTPQSTQYNLFTERFLSEKGLNRHHIESFNHFVEREIKTVLRTNNFIDSDVDS 65

Query: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
            + ++++ D+R+  PS+  + V   + P  CR+ +MTY+  I+V++EY +G    K  +  
Sbjct: 66   AFYMKYTDIRVEPPSVEENMVKRYITPEECRIRNMTYSGDIVVDVEYTRG----KDIISS 121

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLG-------------------ECPLDPGGYF 177
             +VV+G++PIML S R  L  KD  E + +G                   ECP D GGYF
Sbjct: 122  RNVVVGKMPIMLGS-RLSLQQKDFME-SNIGVISSNLRQINNPKYTRPKNECPYDIGGYF 179

Query: 178  IIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQ 237
            I KG E+VLL+QEQL+KNR++I+ D +G++ A VTSS+   KSKT + M+K  +YL  N 
Sbjct: 180  ICKGVERVLLMQEQLAKNRILIENDFRGDLCAVVTSSSLERKSKTKVVMKKKLLYLAHNS 239

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
              + +P+ +VMK MG+ +D E+  ++G+         PSI     + I T+ +AL ++  
Sbjct: 240  LTEDVPLNIVMKGMGITTDLEIDILIGQPT-------PSI-----VHIRTELEALAWIGS 287

Query: 298  KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVE-AMLNKD 356
            ++K    G      E R F  L D+ LA++P    + R K  Y++VM R +++ A  N D
Sbjct: 288  RIKTRAGGI----EEARLF--LCDIILAHIPGIGTDMRRKAEYLSVMARMLIDTADGNVD 341

Query: 357  AM-DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415
            ++ +DKD+VGNKR+EL+GQ++SLLFEDL K + +E++K +D +L K +R+   D   F+V
Sbjct: 342  SLQNDKDFVGNKRIELTGQMLSLLFEDLLKRLNTEIKKALDRVLCKRARAQEMDALHFLV 401

Query: 416  --RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473
              R  IT GL R +STG++ +KRF+M R G+TQVL RLS +  +G  +RVS QFEK+RKV
Sbjct: 402  MNRGLITTGLLRAISTGSWSLKRFRMERAGITQVLTRLSRLSAIGMCSRVSSQFEKTRKV 461

Query: 474  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL 533
            SGPRAL  SQWG+ CP DTPEGEACGLVK+LA++T +T +E+E  +IS    LGVED+  
Sbjct: 462  SGPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITPNEDESGVISALSFLGVEDISA 521

Query: 534  LSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
            +S  +L   +   V  NG+I+G    P+  A  +R +RR+G+I   V V+VN+    +YI
Sbjct: 522  ISPGDLEGASKCWV--NGVIIGTCSDPERMARELRNVRRSGRIPSTVGVWVNKD---LYI 576

Query: 594  ASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
            +++ GR+ RPL+I +  + R+  +H++ L +G ++ +D L EGLIEY+D NE  N+LIA+
Sbjct: 577  STETGRLTRPLIIVENCLPRLTRNHIRLLREGYKTVNDLLNEGLIEYIDQNEAKNSLIAV 636

Query: 654  YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
            +  + T  TTH+EI+P  ILG +AG+IPYPHHNQSPRNTYQCAMGKQ +G    +Q  RM
Sbjct: 637  WSTEITDKTTHLEIDPAAILGYVAGVIPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRM 696

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D   + +V PQRPL  TR +E++ Y+ L AGQN T+AVMS SGYDIEDA+V+NK+S+DRG
Sbjct: 697  DGANFFMVNPQRPLAATRGMEIIKYNDLPAGQNLTIAVMSMSGYDIEDALVLNKASIDRG 756

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
             GR ++ K +    + Y   ++D I+                           +G+  PG
Sbjct: 757  IGRALLFKTHALSLRTYPGGSADTIV--------------------------GEGIPPPG 790

Query: 834  EIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
              ++    +I++ +P+ ++                A   Y+G DG +  VD+ A+    +
Sbjct: 791  MKVQEGTTFIDRRTPMGSK----------------AGAVYRGLDGAS--VDKTAIMRTGD 832

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
              + IK +++  R P +GDKFSSRHGQKGV G I+ QED PF+E G+ PDL+MNPHGFPS
Sbjct: 833  DLITIKTVLKEHRIPRIGDKFSSRHGQKGVVGLILPQEDMPFNELGMSPDLVMNPHGFPS 892

Query: 954  RMTVGKMIELLGGKAGVSCGRF----HYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
            RMTVGK++EL+ GK  +S G      +  +AFG       T +SI++ LV  G+S  GK+
Sbjct: 893  RMTVGKILELVTGKC-ISNGSKKLTQYAATAFG-----GVTAQSIADELVSLGYSETGKE 946

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
             +  G +G  +   IF GP++YQ+LKHMV DKMHAR  GPR +LTRQPTEGR R+GG R+
Sbjct: 947  TLVCGTSGEQIPVRIFFGPVFYQRLKHMVTDKMHARARGPRAVLTRQPTEGRCRDGGFRL 1006

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDCLI YGAS ++ ERL++SSD F   VC  C L+   N       C  C +   +
Sbjct: 1007 GEMERDCLIGYGASEILIERLVISSDKFMAHVCSECKLIISPNG------CPGC-SAAVV 1059

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              +++PYACKLL QEL +M I PR+ L E
Sbjct: 1060 QKIQMPYACKLLFQELIAMKIAPRIILKE 1088


>gi|387592536|gb|EIJ87560.1| RNA polymerase [Nematocida parisii ERTm3]
 gi|387595162|gb|EIJ92787.1| RNA polymerase [Nematocida parisii ERTm1]
          Length = 1089

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1146 (42%), Positives = 711/1146 (62%), Gaps = 108/1146 (9%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97
            FL  +GL + H++SFN FV   I+ ++R N+ I S +D + ++++ D+R+  PS+  + V
Sbjct: 27   FLYEKGLNRHHIESFNDFVEREIKTVLRTNNFIDSDVDSAFYMKYTDIRVEPPSVEENMV 86

Query: 98   SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVL-- 155
               + P  CR+ +MTY+  I+V++EY +G    K  +   +VV+G++PIML S R  L  
Sbjct: 87   KRYITPEECRIRNMTYSGDIVVDVEYTRG----KDIISSRNVVVGKMPIMLGS-RLSLRQ 141

Query: 156  -------YGKDEAELARL---------GECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
                    G D + + R+          ECP D GGYFI KG E+VLL+QEQL+KNR++I
Sbjct: 142  KEFMENQVGIDTSNMQRITNPMYTRPKNECPYDIGGYFICKGVERVLLMQEQLAKNRILI 201

Query: 200  DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
            +TD +G++ A VTSS+   KSKT + M+K  +YL  N   + IP+ +VMK MG+ +D E+
Sbjct: 202  ETDFRGDLCAVVTSSSLERKSKTKVVMKKKLLYLSHNSLTEDIPLNIVMKGMGVTTDLEI 261

Query: 260  VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSIL 319
              ++G+           ++  A+  I T+ +AL ++  ++K  + G         A  +L
Sbjct: 262  DILIGQ----------PVQSIAH--IRTELEALAWIGSRIKTRSGGID------EARLLL 303

Query: 320  RDVFLANVPVHNNNFRPKCFYVAVMLRRMVE-AMLNKDAM-DDKDYVGNKRLELSGQLVS 377
             D+ LA++P    + R K  Y++VM R +++ A  N D + +DKD+VGNKR+EL+GQ++S
Sbjct: 304  CDIILAHIPGTGTDMRRKAEYLSVMARMLIDTANGNTDTLQNDKDFVGNKRIELTGQMLS 363

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV--RDSITVGLERTLSTGNFDVK 435
            LLFEDL K + +E++K +D +L K +R+   D   F+V  R  IT GL R +STG++ +K
Sbjct: 364  LLFEDLLKRLNTEIKKALDRVLCKRARAQELDALHFLVMNRGMITTGLLRAISTGSWSLK 423

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            RF+M R G+TQVL RLS +  +G  +RVS QFEK+RKVSGPRAL  SQWG+ CP DTPEG
Sbjct: 424  RFRMERAGITQVLTRLSRLSAIGMCSRVSSQFEKTRKVSGPRALHCSQWGVFCPADTPEG 483

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            EACGLVK+LA++T +T  E E  +IS    LG+ED+ ++S  ++       V  NG+I+G
Sbjct: 484  EACGLVKSLAMLTEITPAESEESVISALSFLGIEDISVISTGDMEKSKKCWV--NGVIIG 541

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
                P   A  +RK+RR G I   V ++VN     ++I+++ GR+ RPL+I + G  ++ 
Sbjct: 542  ICSDPARMACELRKVRRNGSIPSTVGIWVNND---LFISTETGRLTRPLIIVEDGEPKLT 598

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
            + H++ L +G ++ +D LREGLIE +D NE  N+LIA++  + T DTTH+EI+P  ILG 
Sbjct: 599  QTHIRLLKEGYKTVNDLLREGLIECIDQNEAKNSLIAVWRTEITQDTTHLEIDPAAILGY 658

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +AG+IPYPHHNQSPRNTYQCAMGKQ +G    +Q  RMD   + +V PQRPL  TR +E+
Sbjct: 659  VAGVIPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEI 718

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + Y++L AGQN T+AVMS SGYDIEDA+++NK+S+DRG GR ++ K +    + Y    +
Sbjct: 719  IKYNELPAGQNLTIAVMSMSGYDIEDALILNKASIDRGIGRALLFKTHALSLRTYPGGAA 778

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D I+                           DG+ +PG  ++    +I++ +P+ ++   
Sbjct: 779  DTIV--------------------------GDGIPSPGMKVQEGITFIDRRTPMGSK--- 809

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                         A   Y+G D  +  +D+ A+    +  + IK +++  R P +GDKFS
Sbjct: 810  -------------AGAVYRGLDSAS--IDKTAIMRTGDDLITIKAVVKEHRIPRIGDKFS 854

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G I+ QED PF+E GI PDL+MNPHGFPSRMTVGK++EL+ GK+  +  + 
Sbjct: 855  SRHGQKGVVGLILPQEDMPFNEMGISPDLVMNPHGFPSRMTVGKILELVTGKSIANGSKK 914

Query: 976  ---HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
               +  +AFG         + I+  L+  G+S  GK+ +  G +G  +   IF GP++YQ
Sbjct: 915  LTQYAATAFG-----GVKAQDIANELISLGYSETGKETLICGTSGEQIPVRIFFGPVFYQ 969

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            +LKHMV DKMHAR  GPR +LTRQPTEGR R+GG R+GEMERDCLI YGAS ++ ERL++
Sbjct: 970  RLKHMVTDKMHARARGPRAVLTRQPTEGRCRDGGFRLGEMERDCLIGYGASEILIERLVI 1029

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SSD F   VC  C L+      +    C  C  G  +  +++PYACKLL QEL +M I P
Sbjct: 1030 SSDKFMAHVCSGCKLI------ISPSGCPGCGKGTEMQKIQMPYACKLLFQELMAMKIAP 1083

Query: 1153 RLKLAE 1158
            R+ L E
Sbjct: 1084 RIILKE 1089


>gi|123487429|ref|XP_001324946.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121907837|gb|EAY12723.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1142

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1154 (42%), Positives = 717/1154 (62%), Gaps = 68/1154 (5%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            K+ L+P  LK  GL+K  L+SFN F+ +G+ KI+ AN  ++   +P +++R+K++ + +P
Sbjct: 30   KWNLIPLILKSTGLIKLQLNSFNDFIESGLTKIMNANKEVIFSENPRVYIRYKNIYVDRP 89

Query: 91   SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRS 150
             +     ++ L P MCRLSD TY+  +LV+ ++V GS    T    N+  I ++PIML+S
Sbjct: 90   KIR----NQILTPQMCRLSDETYSGNVLVDYDFVNGS----TVKSFNNQCIAKLPIMLQS 141

Query: 151  CRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINAS 210
             RC LY   +   A+  EC  DPGGYF+I GTE+V+ +QEQ   NR++I+    GN  A 
Sbjct: 142  NRCYLYNASDETFAKYDECRYDPGGYFVINGTERVVHVQEQSPYNRILIEHLANGNKTAV 201

Query: 211  VTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS 270
            V SST T K++  +  +K  + L  N   + IPI V+ +AMG+ SDQEV+Q+V       
Sbjct: 202  VNSSTSTHKTRVELIWKKDTLALHHNALSEDIPIFVLFRAMGVTSDQEVIQLVDPTGAVG 261

Query: 271  ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE--------GRAFSILRDV 322
             LL+ S++E   L+I TQ++A++ +E ++K  T       RE        GR F  LR +
Sbjct: 262  HLLMSSLQEIIKLEISTQDQAIQLIERRLKFLTITGIDATREERNMKGYKGREF--LRSM 319

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L ++P    +FR K  +V  M R ++ + ++   +D +D+ GNKRLEL+G+L+ LLFED
Sbjct: 320  VLPHIPSTLTDFRRKSVFVGFMTRWLLLSAIDPRMIDGRDFFGNKRLELAGELLELLFED 379

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRK 442
            LFKT  + +QKTV   ++K       +++Q +  ++IT GL+  +S+GN+++ RFKM R 
Sbjct: 380  LFKTFNASMQKTVSRTINKSKGIDPSNIAQAMHSETITHGLKYAISSGNWNITRFKMMRA 439

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++Q+L R+S++  +  +TR+S  FEK++KV+G R L PSQ+G +CP DTPEG  CGL+K
Sbjct: 440  GVSQLLGRMSYLQFVSMVTRISSHFEKTQKVAGARLLYPSQFGFICPSDTPEGAQCGLIK 499

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            N AL  HVT   +  P       LGVE+L + SGEE+   N+++V+ NG  +G    P  
Sbjct: 500  NFALTVHVTVWADPAPARRTLLDLGVEELVVFSGEEIS--NNYIVMLNGEPIGIIDDPYS 557

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKEL 622
                 R++RR   + +F ++++ E ++C+ ++++ GRVCRPL+I +   S++ +  M ++
Sbjct: 558  ICRRFRQVRRRHWVDKFAAIWIVEAKKCINVSTEAGRVCRPLIIVEDHKSKLTQELMDQV 617

Query: 623  LDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----------------THI 665
              G  +FD  L  G+IEY+DVNE  + LIA  + D   +                  TH+
Sbjct: 618  NRGEINFDYLLDNGIIEYVDVNEMTDCLIAFNDKDIEEERKNCVNDPPLAKGELRYFTHL 677

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EI    +LGV AG++P PHHNQSPRNTYQCAMGKQA+G  A N + R+D   Y   YPQ+
Sbjct: 678  EIHNAQMLGVCAGVVPCPHHNQSPRNTYQCAMGKQAIGPTALNIMHRVDKSTYFNCYPQQ 737

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            P++ TRTI L  Y ++  GQNA VA+MSYSG+DIEDA++MNK+SLDRGFGR   + K   
Sbjct: 738  PMVQTRTIRLSRYHEMPCGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYLSKLDL 797

Query: 786  INQKYANST-SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            + + Y      DRI   DR  P  E +    +S     +LD DG+  PGE I+   +Y N
Sbjct: 798  MLKNYQGGVIGDRIAPLDRERP--ENIASPQYS-----LLDADGIIRPGERIEKGMIYAN 850

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K  PL    S +    Q       AR  Y        ++  V++ + +   + IK     
Sbjct: 851  KYVPLNFEESPVKFMAQ------PARYNYY-----PVMIQNVSVYTTETTQV-IKIKTAD 898

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
             RRPELGDKFSSRHGQKGV G IV QED P++E GICPD+IMNPHGFPSRMTVGKMIEL+
Sbjct: 899  FRRPELGDKFSSRHGQKGVIGLIVPQEDMPYTEDGICPDMIMNPHGFPSRMTVGKMIELV 958

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GK G+  GR   G+AF      +D V+ I++ L+  G+SY+GKDM+ SGITG PL AYI
Sbjct: 959  SGKVGILTGRIGNGTAFS-----SDRVKDIADDLIAAGYSYSGKDMLMSGITGEPLYAYI 1013

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F GP++YQ LKHMV DKM AR +G    LTRQPT+GR+R GG+R+GEMERDCLI YGA+ 
Sbjct: 1014 FFGPVFYQSLKHMVKDKMQARATGQVQYLTRQPTQGRSRQGGMRLGEMERDCLIGYGAAS 1073

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
            +++ER+++SSD +E  VC  CG +GY       G C+ CK  + +  +++PYACKLL  E
Sbjct: 1074 ILYERMLISSDVYEANVCAKCGFIGY------EGYCTHCKTKEYMKIVRMPYACKLLFYE 1127

Query: 1145 LQSMNIVPRLKLAE 1158
            L +M I P+++L +
Sbjct: 1128 LMAMGIAPKVRLED 1141


>gi|196011451|ref|XP_002115589.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
 gi|190581877|gb|EDV21952.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
          Length = 1016

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/902 (50%), Positives = 589/902 (65%), Gaps = 110/902 (12%)

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSP--PNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
            L++  +  AL Y+  +V++  +G+   P D    A  +L +V L+++P            
Sbjct: 196  LEVDNKGNALSYIGSRVRQRKWGAKKLPVDE---ARDLLANVVLSHIP------------ 240

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
                             +DDKDY GNKRLEL+GQL++LLFEDLFK   SE++   +  + 
Sbjct: 241  ---------------SILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIP 285

Query: 401  KPS--------RSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLS 452
            K          R   FD+ +++ +D IT G    L+TGN+ +KR+KM R G+TQVL+RLS
Sbjct: 286  KQRAGPVNMNLRFLEFDIVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLS 345

Query: 453  FIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 512
            ++  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT
Sbjct: 346  YLSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 405

Query: 513  DEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR 572
            D ++  +I+L + LGVED+ LLSGEEL  P+ ++V  NG +LG  R  K      R LRR
Sbjct: 406  DSDDKIIINLLFNLGVEDINLLSGEELSLPHIYIVYVNGYVLGAARNYKKLIRTFRLLRR 465

Query: 573  --------------AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
                          A  I EFVS++ N   R + IA DGGRVCRP +I       +   H
Sbjct: 466  DIKTAQVKRILYLIANYINEFVSIYPNHTYRQINIALDGGRVCRPYIIVKSEKPLVTIKH 525

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++EL  G+RSFDDF+R GLIEYLDVNEEN+  IALYE D    TTH++IEPFTILGV AG
Sbjct: 526  IEELSQGIRSFDDFIRNGLIEYLDVNEENDCNIALYESDINSKTTHLDIEPFTILGVCAG 585

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            LIP+PHHNQSPRNTYQCAMGKQA+G I +NQ  R+D++LY LVYPQ PL+ T+TI+L+ +
Sbjct: 586  LIPFPHHNQSPRNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKTKTIDLIEF 645

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            DKL AGQNA +AVMSYSGYDIEDA+++NK+S+DRG                 A++ + + 
Sbjct: 646  DKLPAGQNAIIAVMSYSGYDIEDAVILNKASVDRG---------------PQADAQTGKT 690

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
            +   +                   +LD DG+  PGE ++   + INK  P  T   I + 
Sbjct: 691  IWKHK-------------------VLDADGICMPGEKVESKQILINKSIPSVTSTPI-AG 730

Query: 859  TGQT--DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            TGQ      Y     TY+GP      V+ V + S+ +    IK L+R +RRPE+GDKFSS
Sbjct: 731  TGQKLLQPEYIDMPMTYRGP--TDAYVENVMISSNNDEAFLIKTLLRSSRRPEIGDKFSS 788

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGVCG IV QED PF+      D IMNPHGFPSRMTVGK++E++GGKA +  G+F 
Sbjct: 789  RHGQKGVCGLIVNQEDMPFT------DQIMNPHGFPSRMTVGKLMEVIGGKASLLDGKFR 842

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            YG+AF       D +E + +TL+ + +SY GKD + SGITG  L AYIF GP+YYQ+LKH
Sbjct: 843  YGTAF-----DGDKLEDLCQTLIDYNYSYAGKDYLTSGITGEGLSAYIFFGPVYYQRLKH 897

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLIAYG SML+ ERLM+SSD 
Sbjct: 898  MVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSMLLVERLMISSDA 957

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            FEV VC  CGLL Y      +  C  C +  ++SS+++PYACKLL QELQSMNI+PRL L
Sbjct: 958  FEVDVCNNCGLLAY------SKWCHYCHSSCHVSSLQIPYACKLLFQELQSMNIIPRLSL 1011

Query: 1157 AE 1158
             +
Sbjct: 1012 TQ 1013



 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/196 (50%), Positives = 141/196 (71%), Gaps = 5/196 (2%)

Query: 12  DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV 71
           D +   ++ L APV  + DK++L+P FLKV+GLVKQH+DS+NYF+N  I+KIV AN+++ 
Sbjct: 12  DSEWTKEKNLTAPVNKLEDKWKLVPAFLKVKGLVKQHIDSYNYFINCEIKKIVNANNKVT 71

Query: 72  SGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
           +  D   +L++ +V +G P +     V++   PH CRL D+TY+API+V+IEY +G+   
Sbjct: 72  TDADTVFYLKYLNVYVGNPDIEESFNVTKPTYPHECRLRDLTYSAPIVVDIEYTRGAQR- 130

Query: 131 KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
              + +  + IGR+P+MLRS  CVL GK   ELA+  ECP+DPGGYFI+KG EKV+LIQE
Sbjct: 131 ---IRRQKLPIGRVPVMLRSSICVLNGKSPVELAKYNECPIDPGGYFIVKGVEKVILIQE 187

Query: 191 QLSKNRVIIDTDKKGN 206
           QLSKNR+I++ D KGN
Sbjct: 188 QLSKNRMILEVDNKGN 203


>gi|160330991|ref|XP_001712203.1| rpc2 [Hemiselmis andersenii]
 gi|159765650|gb|ABW97878.1| rpc2 [Hemiselmis andersenii]
          Length = 1100

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/1150 (40%), Positives = 684/1150 (59%), Gaps = 87/1150 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPS 91
            F L+   LK +GL+ Q ++SFNYF+NT I+KI+  N + +   D S FL+F  ++IG  S
Sbjct: 9    FNLVSYILKSKGLIWQQIESFNYFLNTDIKKIIFMNQKKIFDSDDSFFLKFSKLKIGLAS 68

Query: 92   MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 151
              ++ +   ++P+ CR +D +Y   I  ++ +      EK      +  +G+IPIML+S 
Sbjct: 69   EYLNFMEMPISPYQCRTTDSSYTGTIFFDLSF----KIEKKKFNVFNFNLGKIPIMLQSN 124

Query: 152  RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 211
            +C+L+ K+E E   L ECPLDPGGYFI+KGTEKV+LIQEQ+S NR+ I+ D+ G+I A V
Sbjct: 125  KCILFSKNENEFLSLNECPLDPGGYFILKGTEKVILIQEQVSANRINIEQDQHGSICAVV 184

Query: 212  TSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA 271
             S +   K + V+ ++  K+Y     FV++IP+ + +K++G E D+E++ ++G++  Y  
Sbjct: 185  NSFSSNKKIRNVVFLKNQKLYFKHKLFVEEIPLFIFLKSLGFEKDREILDLIGKE--YEN 242

Query: 272  LLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHN 331
            +L  S+ E     I ++++A+ Y+  +   + F    +D   ++ S   + F     +  
Sbjct: 243  ILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEKKFSDNAFKSKSYSENEFFFKEGLTK 302

Query: 332  ---NNFRPKCFY----------VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
                +  PK FY          +++M++++   +      D+KDY GNKRL L+G LVS+
Sbjct: 303  FILTHLTPKVFYGGNLEEKGIFLSLMVKKIFSNLNQPMITDNKDYYGNKRLGLAGNLVSI 362

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFK 438
            LFED F+  + E  K   +  +K  ++   +L  F+ +D IT GLE + STGN+ VK+ K
Sbjct: 363  LFEDFFRKTLKEGYKYYKLNSTKLKKNQHLELISFLRQDIITNGLEYSFSTGNWIVKKLK 422

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
            + + G+TQ L+RLSFI ++  +T+++ Q EK RK+ GPR+L  SQWGM+CP DTPEGE+C
Sbjct: 423  IEKNGVTQTLSRLSFISSISIVTKITSQNEKIRKIRGPRSLHSSQWGMICPTDTPEGESC 482

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH--NPNSFL------VIFN 550
            GLVK+L ++ H++   +   +  LCY LG+E+L       +H    N FL      +  N
Sbjct: 483  GLVKDLTILAHISVKIKTRFITQLCYDLGIENL-------IHPKKKNFFLEKKICKIFLN 535

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G  LG H  P  F    R +RR+G I  +VS+F +     + I +D GR+CRP +I D G
Sbjct: 536  GRYLGIHNNPSYFMYSFRSMRRSGMINYYVSIFWDTFSEEIVIFTDEGRICRPFLIVDLG 595

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPF 670
              +IK    K L   +    D    GL+E+LDVNE+NNA IA         TTH+EI P 
Sbjct: 596  KVKIKNFEKKLLKKNLTFCKDLFLTGLLEFLDVNEQNNAFIAQSPQYINNKTTHLEISPE 655

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             +LG+ A LIP+  HNQSPRNTYQCAMGKQA+G+I+ NQ  R D++L LL+YPQ+PL+ T
Sbjct: 656  IVLGICASLIPFLDHNQSPRNTYQCAMGKQAIGSISLNQNQRCDTILSLLIYPQKPLVKT 715

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            + +   G ++L +G NA V ++SYSG+DIEDAI++N+SS++RGF R ++ +K+       
Sbjct: 716  KMVYFSGNNRLTSGINACVCILSYSGFDIEDAIILNRSSIERGFFRSVIARKH------- 768

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII---KPNDVYINKES 847
                  +IL  +    GA+  +    +           +   GE++   K  + ++N E 
Sbjct: 769  ------KILLKNSDFLGAKSFERPLPNLEKFEEKKIKKIENYGEVVKFQKKKNQFLNFEK 822

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
             + +R S+    G+                    ++++V + S+      +K ++R  R+
Sbjct: 823  QIFSRLSLKEFKGE--------------------MIEKVIISSNFLEIFFVKLILRQIRQ 862

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            PE+GDKFSSRHGQKGVCG I  Q+D PFS  GI PDLIMNPHGFPSRMTVGK+IE++G K
Sbjct: 863  PEVGDKFSSRHGQKGVCGAICFQKDLPFSNDGIIPDLIMNPHGFPSRMTVGKVIEIMGAK 922

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
             G   G+F  G+ F E       +  I + L   G+S  GK+  +SGITG P+   +F G
Sbjct: 923  IGSIFGKFIDGTPFIE-----SKIAKIKKKLKIAGYSSEGKEFFFSGITGVPMLMDVFSG 977

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P++YQKLKHMV DK+HARG GP   +TRQP EGR+R GGLR GEMERDCLI+YGAS  I 
Sbjct: 978  PVFYQKLKHMVKDKIHARGKGPCSNITRQPIEGRSRGGGLRFGEMERDCLISYGASEAII 1037

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERL++SSD            L   N  L  G  +  K   NI S+KLPYACKLL QELQS
Sbjct: 1038 ERLLISSD------------LTQANFDLHTGFFTDKKKSLNIVSLKLPYACKLLFQELQS 1085

Query: 1148 MNIVPRLKLA 1157
            MNI+PRL   
Sbjct: 1086 MNILPRLTFG 1095


>gi|296087814|emb|CBI35070.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/470 (85%), Positives = 428/470 (91%), Gaps = 11/470 (2%)

Query: 691  NTYQCAMGKQAMG-NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            N    ++G   MG NI   QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV
Sbjct: 2    NFDHASLGLFLMGRNILILQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 61

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            AVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK++A+NQ+Y N+ SDRI+RP + G  AE
Sbjct: 62   AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAE 121

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
            RMQ          ILDDDGLAAPGEIIKPND+YINKESP+ T+G ++SP G  DS Y+ +
Sbjct: 122  RMQ----------ILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSAYKPS 171

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
            RQT+KGP+GE  VVDRVALCSDKN +LCIKFLIRHTRRPE+GDKFSSRHGQKGVCGTI+Q
Sbjct: 172  RQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQ 231

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
            QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD
Sbjct: 232  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 291

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
             VE+IS+TLVKHGFSY+GKD IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP
Sbjct: 292  KVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 351

Query: 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 1109
            RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG
Sbjct: 352  RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 411

Query: 1110 YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            YYNHKLK GICSTCKNGDNIS+MKLPYACKLL QELQ+MN+VPRLKL EA
Sbjct: 412  YYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRLKLTEA 461


>gi|399950027|gb|AFP65683.1| second-largest subunit of RNA polymerase III [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1096

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1133 (39%), Positives = 666/1133 (58%), Gaps = 85/1133 (7%)

Query: 43   GLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
            GL+ Q ++SFN F+N  ++KI    ++  + +  +  ++F ++RIG  S  +D +   + 
Sbjct: 17   GLIWQQIESFNNFININLKKISYNFNQNENNMMKTCLIKFHNLRIGNVSDFIDMIEVPIT 76

Query: 103  PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAE 162
            PH  R+ D+TY A + ++I +      EK      D  +G+IPIML+S +C L+GK+E +
Sbjct: 77   PHQSRIRDLTYCASLFIDISFT----IEKRIKYCFDFNLGKIPIMLKSNKCALFGKNEEQ 132

Query: 163  LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKT 222
            L  L EC LDPGGYFIIKG E+++LIQE+++ NR+ I+TDK+GN+ A V  S    K++ 
Sbjct: 133  LISLKECALDPGGYFIIKGNERIILIQEKIASNRISIETDKRGNVCAHVDFSNYGKKNRN 192

Query: 223  VIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN 282
             I M+  K+Y   N F + IP+ ++  A+G+++  +++ ++G   RY  +L  S +E  +
Sbjct: 193  TIVMKNKKLYFRNNYFFEDIPLFIIFVAIGLDNQHDIIDLIGN--RYENILQLSKQEAKH 250

Query: 283  LDIYTQEKALEYLEGKV------KRSTFGSPPNDREGRAFSILRDVFLANV-------PV 329
              I +  +A+ Y+  +       K+ T      +       I   +   N+         
Sbjct: 251  EGIASTNQAIRYVIQRFDLKIMKKKDTSTDYNTNHPSTIKKIFEAIVFRNILGLKSTSEK 310

Query: 330  HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMIS 389
            ++ N   K   +A+M+RR+  ++     +D KDY GNKR EL+G+LVS+LFEDLF+    
Sbjct: 311  NDKNSEEKIIILAMMVRRIFLSLDQPMIVDSKDYYGNKRFELAGKLVSVLFEDLFRKTNK 370

Query: 390  EVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLA 449
            E ++  +++  K   +   ++   I  D IT G E   STGN+ VK +++ + G+TQ+L+
Sbjct: 371  EFERYFEMVQKKKKETLNHEIVPGIRSDLITTGFEYAFSTGNWMVKPYQLEKNGITQLLS 430

Query: 450  RLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTH 509
            RLSFI TL  +T+++ Q EK RKV GPR+LQ SQWGM+CP +TPEGE+CGLVK+LA++ H
Sbjct: 431  RLSFISTLSMLTKINSQNEKIRKVRGPRSLQTSQWGMVCPTETPEGESCGLVKDLAILAH 490

Query: 510  VTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMR 568
            +TT ++   L+ +C+ LG E         +   + F+ IF NG  +G H +P  F    R
Sbjct: 491  ITTAQKSKYLLEICFKLGAETFVFSKISSIKTSSDFVKIFLNGRYVGFHSQPSTFLYAFR 550

Query: 569  KLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS 628
             LRR+G I +++S++ +     + I SD GR+CRP ++ + G  +I       L      
Sbjct: 551  SLRRSGMINKYISIYWDTFSSEIKILSDSGRICRPFMVVNSGKCKINNFEKSLLKKEALF 610

Query: 629  FDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
             ++  R+G +E+LDVNE+NNA I+         ++H+EI P  ILG+   LIP+  HNQS
Sbjct: 611  MENLSRKGFVEFLDVNEQNNAFISHDLKSLKVRSSHLEITPEIILGICGNLIPFSDHNQS 670

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
            PRNTYQCAMGKQA+G+I++NQ  R D++L +L+YPQ+PL+ T+T+   G ++L +G N  
Sbjct: 671  PRNTYQCAMGKQAIGSISYNQNQRCDTVLSILLYPQKPLVRTKTVYFSGNNRLTSGINTC 730

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA 808
            V +MS+SGYDIED+I+MN+SS +RG  R  V++K+                         
Sbjct: 731  VCIMSFSGYDIEDSIIMNRSSTERGLFRSFVMRKHK------------------------ 766

Query: 809  ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN--KESPLETRGSIMSPTGQTDSRY 866
                          IL  D L+    +   N  ++N  K   ++  G + S    ++S Y
Sbjct: 767  --------------ILVKDFLSEKKSLTTTNKKFLNNKKSDNIQKVGDLFSNV-TSNSFY 811

Query: 867  R-----SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
                   ++ ++K   GE  +V+++ + S+       K +IR  R+PE+GDKFSSRHGQK
Sbjct: 812  DLGQIILSQVSHKEISGE--MVEKIIISSNFRELFFAKLVIRQIRKPEVGDKFSSRHGQK 869

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G+CG +  Q+D PFS  G+ PDLIMNPHGFPSRMT+GKM ELL GK     G F  G+AF
Sbjct: 870  GICGFLCFQKDIPFSNDGVIPDLIMNPHGFPSRMTIGKMFELLNGKNSAYSGNFKDGTAF 929

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             EP   A     +   L K GF+  G D  +SGI+G  L+  IF GP++YQKLKHMV DK
Sbjct: 930  IEPKKKA-----VDRNLRKLGFNSKGNDFFFSGISGQLLKMEIFSGPVFYQKLKHMVKDK 984

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GPR  LT+QP EGR++ GG R GEMERDCLI+YGAS  I ERL+ SSD      
Sbjct: 985  IHARTRGPRSPLTKQPIEGRSKEGGQRFGEMERDCLISYGASDSIIERLIFSSD------ 1038

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                  L + N  L  G+ +  +    I S+++PYACKLL QELQSMNI+PRL
Sbjct: 1039 ------LLFINIDLDTGLPTYKEINSRIISIRIPYACKLLFQELQSMNILPRL 1085


>gi|330793440|ref|XP_003284792.1| RNA polymerase III, second largest subunit [Dictyostelium purpureum]
 gi|325085286|gb|EGC38696.1| RNA polymerase III, second largest subunit [Dictyostelium purpureum]
          Length = 1586

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/662 (60%), Positives = 494/662 (74%), Gaps = 23/662 (3%)

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKN ALMTHVTTD+ EGPL+ L + LGV+D+ L++GEEL++ N+FLV+ NG I+G H
Sbjct: 948  CGLVKNFALMTHVTTDDPEGPLLRLAFNLGVQDILLVTGEELNSRNAFLVLLNGQIIGIH 1007

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
              P  F + +RK+RRAG+I EFVS+  N  Q+ + IA DGGR+CRPL+I D  + R+K+ 
Sbjct: 1008 NSPDYFVNTLRKMRRAGRIREFVSICKNAAQQTINIACDGGRLCRPLIIVDNRVPRLKQE 1067

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            H+++L DG+R+FDDF++EG+IEYLDVNEEN++ +A  E    P TTH+EIEPFT+LG +A
Sbjct: 1068 HIEDLKDGLRTFDDFIKEGIIEYLDVNEENDSYLAWRELAIKPHTTHLEIEPFTMLGCVA 1127

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
            GLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLV+PQRPL  TRTIEL+ 
Sbjct: 1128 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHPQRPLCQTRTIELLQ 1187

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG NATVAVMSYSGYDIEDA+VMNK+SLDRGFGRCIV+KK     +K+ N TSDR
Sbjct: 1188 WFRLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1247

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
            I  P    P   R            +LD DG+A PGE+ +   + +NK SP+ T     +
Sbjct: 1248 IFPP---TPDNLRQSK-------FALLDSDGIAKPGELAQKGQILVNKYSPMNTVDPAPN 1297

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
            P    DS Y+S+   YK  +     +D+V L +  +  L IK L+R TRRPELGDKFSSR
Sbjct: 1298 PELIPDSAYKSSYMGYKYEN--PAFIDKVLLTNGDDDQLLIKLLMRSTRRPELGDKFSSR 1355

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGVCG IV+QED PFS+ GICPD+IMNPHGFPSRMT+GKMIELL GKA V  G+F Y
Sbjct: 1356 HGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAAVLSGKFGY 1415

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            G+ FG      D V +IS+ L+  GFSY GKD + SG+TG PL  +IF GPI+YQKLKHM
Sbjct: 1416 GTCFG-----GDRVANISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHM 1470

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V+DKMHAR  GP V LTRQPTEGRAR GGLR+GEMERDCLI YGAS LI ERLM+SSD F
Sbjct: 1471 VMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDRF 1530

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             V  C+ CG LGY       G C  CK+  N+S++++PYACKLL QELQ+MNIVPRLKL 
Sbjct: 1531 TVYCCKKCGFLGY------EGYCQYCKSSVNVSTIQIPYACKLLFQELQAMNIVPRLKLI 1584

Query: 1158 EA 1159
            ++
Sbjct: 1585 DS 1586



 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/491 (51%), Positives = 351/491 (71%), Gaps = 9/491 (1%)

Query: 13  EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
           ++L +  KL   +K+V +K++L+P FLK RGLVKQH+DSFN+FVN  ++KIV+AN+R+ +
Sbjct: 23  DELYNPSKLTDDIKAVEEKWKLVPAFLKCRGLVKQHIDSFNFFVNVEMKKIVKANERLTT 82

Query: 73  GIDPSIFLRFKDVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE 130
             DPS F++F D+R+G P  T   D  S +  P  CRL DMTY+APILV+IEY +G    
Sbjct: 83  EQDPSFFVKFVDIRVGSPISTENDDFDSSQQTPQKCRLRDMTYSAPILVDIEYTRG---- 138

Query: 131 KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
           KT + K DV IG IPIMLRS  CVL  K   ++A LGECP+DPGGYFI++G EKV+L  E
Sbjct: 139 KTVIGKKDVHIGNIPIMLRSSNCVLANKTHEQMALLGECPMDPGGYFIVRGVEKVILNHE 198

Query: 191 QLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKA 250
           QLSKNR+II+TD K   +A VTSST   KS+T I ++  K+YL  N F + IP+ +V+K 
Sbjct: 199 QLSKNRIIIETDSKHLPSAQVTSSTHERKSRTTITLKNEKLYLKHNTFGEDIPVAIVLKG 258

Query: 251 MGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFG-SP 307
           MG+E+DQE+ Q+VG D  +   + PS+EEC+   ++TQ +AL+YL  ++K  R  +G   
Sbjct: 259 MGVETDQEMAQLVGSDDVFLDAIAPSLEECSKCGVHTQAQALDYLGSRIKVFRRPYGVQT 318

Query: 308 PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
              +   A  IL  V L +VPV   NFR K  Y+++M+RR++ A  +K  +DDKDY GNK
Sbjct: 319 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYISLMIRRIIMASKDKGCLDDKDYYGNK 378

Query: 368 RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTL 427
           R+ELSGQL+SLLFED+FK  +SE++K++D  ++KP+R+  FD  + I  D+IT G    +
Sbjct: 379 RIELSGQLISLLFEDVFKKFLSELKKSIDQAIAKPNRAEPFDFPKLIRTDTITNGFTHAI 438

Query: 428 STGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
           S+G +++KRF+M R G++QVL+RLS+I  LG MTR+  QFEK+RKV+GPR+LQPSQWGML
Sbjct: 439 SSGQWNLKRFRMERSGVSQVLSRLSYISCLGMMTRIQSQFEKTRKVAGPRSLQPSQWGML 498

Query: 488 CPCDTPEGEAC 498
           CP DTPEGEAC
Sbjct: 499 CPSDTPEGEAC 509


>gi|66806019|ref|XP_636731.1| RNA polymerase III, second largest subunit [Dictyostelium discoideum
            AX4]
 gi|74852634|sp|Q54IZ9.1|RPC2_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc2; Short=RNA
            polymerase III subunit C2; AltName: Full=DNA-directed RNA
            polymerase III subunit B; Contains: RecName: Full=Ddi
            rpc2 intein
 gi|60465151|gb|EAL63250.1| RNA polymerase III, second largest subunit [Dictyostelium discoideum
            AX4]
          Length = 1608

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/662 (60%), Positives = 494/662 (74%), Gaps = 23/662 (3%)

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKN ALM+HVTTD+ EGPL+ L Y LGV+D+ L++GEEL++ N++LV+ NG I+G H
Sbjct: 970  CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
              P  F   +RK+RRAG+I EFVS+  N+ Q+ + +A DGGR+CRP++I D    R+ + 
Sbjct: 1030 NSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            H+++L DG+R+FDDF+REG+IEYLDVNEEN++ +A  E    P TTH+EIEPFT+LG +A
Sbjct: 1090 HIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLEIEPFTMLGCVA 1149

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
            GLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLV+ QRPL  TRTI+L+ 
Sbjct: 1150 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLN 1209

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + KL AG NATVAVMSYSGYDIEDA+VMNK+SLDRGFGRCIV+KK     +K+ N TSDR
Sbjct: 1210 WYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1269

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
            I  P    P   R            +LD DG+A PGE+ +   + +NK SPL T  +  +
Sbjct: 1270 IFPPT---PNDLRQPKYG-------LLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPN 1319

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
            P    DS Y+S+   YK  +     +D+V L S  +  L IK L+R TRRPELGDKFSSR
Sbjct: 1320 PELIPDSAYKSSYMGYKYDN--PAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSR 1377

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGVCG IV+QED PFS+ GICPD+IMNPHGFPSRMT+GKMIELL GKAGV  G+F +
Sbjct: 1378 HGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGF 1437

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            G+ FG      D VE+IS+ L+  GFSY GKD + SG+TG PL  +IF GPI+YQKLKHM
Sbjct: 1438 GTCFG-----GDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHM 1492

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V+DKMHAR  GP V LTRQPTEGRAR GGLR+GEMERDCLI YGAS LI ERLM+SSD F
Sbjct: 1493 VMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDRF 1552

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             V  C+ CG LGY       G C  CK+  +IS++++PYACKLL QELQ+MNIVPRLKL 
Sbjct: 1553 TVYACKNCGFLGY------EGYCQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKLV 1606

Query: 1158 EA 1159
            ++
Sbjct: 1607 DS 1608



 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/490 (51%), Positives = 345/490 (70%), Gaps = 8/490 (1%)

Query: 13  EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
           ++L +  KL   +K V +K++L+P F+K RGLVKQH+DSFN+F+N  ++KIV+AN+R+ +
Sbjct: 21  DELYNISKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTA 80

Query: 73  GIDPSIFLRFKDVRIGQPSMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
             DPS F+RF D+ +G P+ T D + S +L P  CRL DMTY+API VNIEY +     K
Sbjct: 81  ENDPSYFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRN----K 136

Query: 132 TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
             + K DV IG IPIMLRS  CVL  K   ++A LGECP+DPGGYFI++G EKV+L  EQ
Sbjct: 137 QIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQ 196

Query: 192 LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
           LSKNR+II+ D KG  +ASVTSST   KS+T + ++  K+YL  N F + IP+ +V+K M
Sbjct: 197 LSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGM 256

Query: 252 GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFG-SPP 308
           G+E+DQE+ Q+VG D  +   + PS+EEC    ++T  +AL+YL  ++K  R  +G    
Sbjct: 257 GVETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNK 316

Query: 309 NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
             +   A  IL  V L +VPV   NFR K  Y+++M+RR++ A  +K  +DDKDY GNKR
Sbjct: 317 KTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKR 376

Query: 369 LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
           +ELSGQL+SLLFED FK   SE++K+VD  ++K +R+   DL + I  D+IT G    +S
Sbjct: 377 IELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAIS 436

Query: 429 TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
           +G +++KRF+M R G++QVL+RLS+I  +G MTR+  QFEK+RKV+GPR+LQPSQWGMLC
Sbjct: 437 SGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLC 496

Query: 489 PCDTPEGEAC 498
           P DTPEGEAC
Sbjct: 497 PSDTPEGEAC 506


>gi|156101694|ref|XP_001616540.1| DNA-directed RNA polymerase III subunit [Plasmodium vivax Sal-1]
 gi|148805414|gb|EDL46813.1| DNA-directed RNA polymerase III subunit, putative [Plasmodium vivax]
          Length = 1427

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/805 (50%), Positives = 571/805 (70%), Gaps = 34/805 (4%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRF 82
            +K+V +K++LLP +LKV+GLVKQH++S+NYF+   I+ I+ A  N  + S ID   ++ F
Sbjct: 213  IKNVTEKWKLLPAYLKVKGLVKQHIESYNYFIKQEIKTIMNATTNKILKSDIDEHFYVEF 272

Query: 83   KDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
             D+ +G+PS+  + +   L P +CR  D+TY+API V++EYV+GS+     + KN+V IG
Sbjct: 273  LDIFVGKPSVEENMIETNLTPQICRQRDLTYSAPIYVDVEYVKGSNI----IRKNNVEIG 328

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            R+P+MLRS  C+L  K E EL +LGECP DPGGYFI+KGTE+VLL+QEQLSKNR+I++ D
Sbjct: 329  RLPVMLRSDICILNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMD 388

Query: 203  KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
             K NI A++TS+T   KS+  I  +  K+YL  N F++ I + ++++AMG ESDQE+ QM
Sbjct: 389  IKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQM 448

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGS-----PPNDRE 312
            +G    Y   +L S+ E  + +I T   AL Y+  K++     +  F S       N+++
Sbjct: 449  IGSHRNYLNGILLSLYELYSENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKD 508

Query: 313  --GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
                    L  V L+++   N  +FR K   + +M+RR+++   NK+ +DDKDY GNKRL
Sbjct: 509  IIEEGLDFLSRVLLSHIQQKNKYDFRNKARCICLMIRRVLDGANNKNELDDKDYYGNKRL 568

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRF--------------DLSQFIV 415
            EL+GQL+SLLFEDL+K     ++K +D  LSK  +S+                D+ + + 
Sbjct: 569  ELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYSGNVNDTYPDVFRSLP 628

Query: 416  RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
            +D IT G++  +STGN+++KRFKM + G++QVL+RLSFI  +G MTR++ QFEK RKVSG
Sbjct: 629  KDIITRGMQAAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSG 688

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP-LISLCYCLGVEDLELL 534
            PRALQPSQWG+LCPCDTPEGE+CGLVKNLALMTHVT D E    LI + Y LGVED + L
Sbjct: 689  PRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNEHLIEILYTLGVEDSDSL 748

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            +GEE++    F VIFNG++LG H++P+ F   +R LRR GKIG+FVS++ N     +YI+
Sbjct: 749  TGEEMYKQGIFFVIFNGILLGVHKKPRIFMRRIRCLRRYGKIGQFVSIYDNFLHNAIYIS 808

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            +DGGR+CRPL+I + G S++ + H+  L  G+ +F D L+  +IE++DVNE+NN LIAL 
Sbjct: 809  TDGGRLCRPLIIVENGKSKLSQEHILSLEKGIINFFDLLKSSVIEWIDVNEQNNLLIALN 868

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
            E D + +TTH+EI+P TILGV+AGLIPYP+HNQSPRNTYQCAMGKQA+G I +NQ  R D
Sbjct: 869  ESDISVNTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRCD 928

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            +LLYLLVYPQ+PL+ ++TIE + ++KL AGQNA VAVMS+ GYDIEDAIVMNKSS+DRGF
Sbjct: 929  TLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGF 988

Query: 775  GRCIVVKKYTAINQKYANSTSDRIL 799
            GRC+ ++K+    +KY N ++D +L
Sbjct: 989  GRCMSLRKHAVELKKYFNGSNDLVL 1013



 Score =  354 bits (909), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 175/344 (50%), Positives = 231/344 (67%), Gaps = 29/344 (8%)

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSI-------MSPTGQTDSRYRSARQTYKGP 876
            LD DG+ + G +++   VYINK SP   +  +       ++     + +Y+S   +Y   
Sbjct: 1105 LDVDGVVSIGYLLREGQVYINKYSPKNVKDHVKDISKIDLNDLKSNEVKYKSVYPSY--- 1161

Query: 877  DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
                  VD++    +  G    K ++R TR PELGDKFSSRHGQKGV G +V QED PF+
Sbjct: 1162 ------VDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFT 1215

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESIS 995
            E GICPDLIMNPHGFPSRMTVGK++EL+  K+ V  G F YGS F G P       E ++
Sbjct: 1216 ESGICPDLIMNPHGFPSRMTVGKLLELVASKSAVLDGEFKYGSIFSGTP------FEEMA 1269

Query: 996  ETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTR 1055
              L K+GF+ + K+++YSG+TG PL+ YIFMGPIYYQKLKHMV DK+HAR  GPR +LTR
Sbjct: 1270 SILFKYGFNCSCKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTR 1329

Query: 1056 QPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKL 1115
            QPTEGR++ GGLR+GEMERDCLIAYG S L+ ERLM+SSD  +V +C  CG++GY  +  
Sbjct: 1330 QPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCDVYICEDCGMMGYDTY-- 1387

Query: 1116 KAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
                C+ C+  D  + +K+PYACKLL QELQ+MN+ P++ + E 
Sbjct: 1388 ----CTFCQKCDKNALVKMPYACKLLFQELQTMNVFPKIVVKET 1427


>gi|124805562|ref|XP_001350475.1| DNA-directed RNA polymerase III subunit, putative [Plasmodium
            falciparum 3D7]
 gi|23496598|gb|AAN36155.1|AE014845_10 DNA-directed RNA polymerase III subunit, putative [Plasmodium
            falciparum 3D7]
          Length = 1450

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/806 (50%), Positives = 570/806 (70%), Gaps = 35/806 (4%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRF 82
            V ++ +K++LLP +LKV+GLVKQH++S+NYF+   I+ I+ A  N  I S ID   ++ F
Sbjct: 236  VNTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEF 295

Query: 83   KDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
             D+ +G PS+  + +  KL P +CR  D+TY+API V++EYV+G+    + + KN+V IG
Sbjct: 296  LDITVGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGN----SIITKNNVEIG 351

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            R+P+MLRS  CVL  K E EL +LGECP DPGGYFI+KGTE+VLL+QEQLSKNR+I++ D
Sbjct: 352  RLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMD 411

Query: 203  KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
             K NI A++TS+T   KS+  I  +  K+YL  N F++ I + ++++AMG ESDQE+ QM
Sbjct: 412  IKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQM 471

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGS-----PPNDRE 312
            +G    Y   +L S+ E  N +I T   AL Y+  K++     +  F S       N+++
Sbjct: 472  IGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKD 531

Query: 313  --GRAFSILRDVFLANVPVHNN-NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
                    L  V L+++   +  +FR K   + +M+RR++++  NK+ +DDKDY GNKRL
Sbjct: 532  IIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRL 591

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRF---------------DLSQFI 414
            EL+GQL+SLLFEDL+K     ++K +D  LSK  +S+                 D+ + +
Sbjct: 592  ELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNL 651

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
             +D IT G++  +STGN+++KRFKM + G++QVL+RLSFI  +G MTR++ QFEK RKVS
Sbjct: 652  PKDIITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVS 711

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP-LISLCYCLGVEDLEL 533
            GPRALQPSQWG+LCPCDTPEGE+CGLVKNLALMTHVT D E    LI + Y LGVED + 
Sbjct: 712  GPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDS 771

Query: 534  LSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
            L+GEE++    F VI NG++LG H+RP+ F   +R LRR GKIG+FVS++ N     +YI
Sbjct: 772  LTGEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNAIYI 831

Query: 594  ASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
            ++DGGR+CRPL+I + G S++   H+K L +G  +F D L+  +IE++DVNE+NN LIAL
Sbjct: 832  STDGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIAL 891

Query: 654  YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
             E D +  TTH+EI+P TILGV+AGLIPYP+HNQSPRNTYQCAMGKQA+G I +NQ  R 
Sbjct: 892  NESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGYNQFVRC 951

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D+LLYLLVYPQ+PL+ ++TIE + ++KL AGQNA VAVMS+ GYDIEDAIVMNKSS+DRG
Sbjct: 952  DTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRG 1011

Query: 774  FGRCIVVKKYTAINQKYANSTSDRIL 799
            FGRC+ ++K++   +KY N ++D +L
Sbjct: 1012 FGRCMSLRKHSVELKKYFNGSNDIVL 1037



 Score =  357 bits (916), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 178/345 (51%), Positives = 230/345 (66%), Gaps = 31/345 (8%)

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS--------RYRSARQTYKG 875
            LD DG+A+ G +IK   +Y+NK SP   +  +    G+ D         +Y+S   +Y  
Sbjct: 1128 LDMDGVASIGYLIKEGQLYVNKFSPKNIKDHV-KDIGKVDINDFKINEIKYKSVYPSY-- 1184

Query: 876  PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF 935
                   +D++    +  G    K ++R TR PELGDKFSSRHGQKGV G +V QED PF
Sbjct: 1185 -------IDKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPF 1237

Query: 936  SERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESI 994
            +E GICPDLIMNPHGFPSRMTVGK++EL+  KA V  G + YGS F G P       E I
Sbjct: 1238 TESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTP------FEEI 1291

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
            +E L ++GF+ + K+++YSG+TG PL+ YIFMGPIYYQKLKHMV DK+HAR  GPR +LT
Sbjct: 1292 AEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLT 1351

Query: 1055 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHK 1114
            RQPTEGR++ GGLR+GEMERDCLIAYG S L+ ERLM+SSD   V +C  CG++GY    
Sbjct: 1352 RQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMMGY---- 1407

Query: 1115 LKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
                 C+ CK  D    +++PYACKLL QELQ+MN+ P++ + E 
Sbjct: 1408 --DLYCTFCKKCDKNIVIQMPYACKLLFQELQTMNVFPKIIVKEV 1450


>gi|323447742|gb|EGB03653.1| hypothetical protein AURANDRAFT_72696 [Aureococcus anophagefferens]
          Length = 902

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/882 (47%), Positives = 576/882 (65%), Gaps = 67/882 (7%)

Query: 28  VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA------NDRIVSGIDPSIFLR 81
           V +K+QLLP FL+   L+KQH+ SF++FV T I+ +V A      N  + S +DP+ +L 
Sbjct: 30  VENKWQLLPLFLR---LMKQHIASFDFFVETEIKNVVAAERDGAPNHTVRSEVDPNFYLS 86

Query: 82  FKDVRIGQPSMTVDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
           + DV +G PS+  D   S    P  CRL D TY+API V++ Y +G     T      V 
Sbjct: 87  YTDVYVGVPSIEEDAFTSTAATPFECRLRDCTYSAPIYVDVRYRRGPQIVTT----KRVP 142

Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
           IG IPIMLRS +CVL+ +  ++L  L ECP DPGGYF++KG EKV+L+QEQLSKNR+II+
Sbjct: 143 IGCIPIMLRSSKCVLHNQSWSQLEALKECPHDPGGYFVVKGVEKVILMQEQLSKNRMIIE 202

Query: 201 TDKKGNINASVTSSTETVKSKTVIQMEKG----KMYLLLNQFVKKIPIMVVMKAMGMESD 256
            D KG + A++TSST   KS+  I +++     ++YL  N    +IP+++++KAMGMESD
Sbjct: 203 LDAKGFVCATITSSTHERKSRCSIVVKQTTHGHRVYLKHNTLGDEIPVVIILKAMGMESD 262

Query: 257 QEVVQMVGR-DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK-----RSTFGSPPN- 309
           QE+ ++V   D + + + + S+EE     + +Q++ALEY+   ++     +S  GS P  
Sbjct: 263 QEIAELVSSADLKIANIFVNSMEEPCAAHVKSQKQALEYVGQAIRAKQKAQSAEGSLPQY 322

Query: 310 --------DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
                     E  A  +L  V L++VPV + +F  K  Y+  + RR++ A L+   +DDK
Sbjct: 323 FPRSRQPVSIEDEAREVLAHVVLSHVPVEDYDFVAKRTYIGHVTRRVLAASLDNSLLDDK 382

Query: 362 DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR--DSI 419
           DY GNKRLEL+GQL+SLLFEDLFK   ++++++ D++L K +R++ FD+ +  V   D+I
Sbjct: 383 DYYGNKRLELAGQLLSLLFEDLFKRFNADLKRSADLVLQKQNRTAVFDIVKSTVWRTDTI 442

Query: 420 TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
           + G    +STGN+ +KRFKM R G+TQVL+RLS++  +G MTRV+ QFEK+RK SGPRAL
Sbjct: 443 SQGFVHAISTGNWVLKRFKMDRAGVTQVLSRLSYVSAIGMMTRVNSQFEKTRKTSGPRAL 502

Query: 480 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
           QPSQWGMLCP DTPEGE CGLVKNLAL+ HVT D +   + S C+ LGVE L  LSG EL
Sbjct: 503 QPSQWGMLCPADTPEGETCGLVKNLALLAHVTRDADAERIRSSCFDLGVEQLGYLSGAEL 562

Query: 540 H-NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
           + +P ++LV  NGL++G  RRP   A  +R +RR+ +IGEFVSV+ +   R +Y+A DGG
Sbjct: 563 NSHPGAYLVFLNGLVIGACRRPHKLAGALRCMRRSKRIGEFVSVYTHTVHRAIYVACDGG 622

Query: 599 RVCRPLVIADKGISRIK-----------------EHHMKELLDGVRS----------FDD 631
           RVCRPL++A  G SR+                    ++ EL + +RS           D 
Sbjct: 623 RVCRPLIVAAHGHSRLTAARLATAFAKKCLTSHDRSNLGELSNRMRSRVSVENSAGALDY 682

Query: 632 FLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
               G+IEY+DVNEENN  IAL E + TP  TH+EI+P TILGV++GL+ +PHHNQSPRN
Sbjct: 683 LTTAGIIEYVDVNEENNCFIALDERELTPRHTHVEIDPVTILGVVSGLVAFPHHNQSPRN 742

Query: 692 TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
           TYQCAMGKQAMG+++ NQ  RMDSLLY LVYPQ+P++ +R ++LV +D L  G NAT+AV
Sbjct: 743 TYQCAMGKQAMGSVSTNQYERMDSLLYSLVYPQKPMVKSRILDLVQFDALPGGCNATLAV 802

Query: 752 MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM 811
           MSYSGYDIEDAIV+NK+SLDRGF RC+VVKK+ A  ++YAN   DR   P    P    +
Sbjct: 803 MSYSGYDIEDAIVLNKASLDRGFMRCVVVKKHQASIRRYANGACDRTTGPP---PATSFV 859

Query: 812 Q-VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
           Q  +         LDDDG+   GE +    + IN+E P+E R
Sbjct: 860 QGTIDARYKRYSALDDDGICRVGEKLNDQYIMINREIPVEDR 901


>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
 gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
          Length = 1138

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1152 (38%), Positives = 671/1152 (58%), Gaps = 55/1152 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ ++  F++  GLVKQH+DS+N F+   +++IV+    I S       +R  DV +G+
Sbjct: 11   DRWLVMKAFIEEYGLVKQHIDSYNRFIEKELKEIVKEFGTI-STPRREYEVRIVDVELGE 69

Query: 90   P-SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P  +  DG    + P  CR+ D+TYAAPI   +  V+         E  ++++G +P+ML
Sbjct: 70   PIVIESDGSEHPVTPMECRIRDLTYAAPIKAKVVIVENG----IEREAEEIILGFLPVML 125

Query: 149  RS-----CRCVLYGKD----EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
            RS      RC+  GK     E +L   GE P DPGGYFII G+E+V++IQE  + NR+++
Sbjct: 126  RSKADPLARCMYEGKSWKECEQKLIEAGEDPRDPGGYFIINGSERVIVIQEDQALNRILV 185

Query: 200  DTDKKGNINA----SVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGME 254
               + G  +A     V S+   V+ + ++   K G +++ +++ + KIP +++M+A+G+E
Sbjct: 186  GKARAGTASALYTAKVISAHAGVRYQVILDYHKDGTLHVSMSRALSKIPFVILMRALGLE 245

Query: 255  SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            SD+++V  V  DP+   +L+PS+E+   ++  T E AL+Y+ G   R     P   R   
Sbjct: 246  SDRDIVLAVSPDPQIQQMLIPSLEQARAIN--TVEDALDYV-GSRFREGLAKPREQRIRV 302

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  IL  +   ++     +   K  ++  M  +++E +  +   DDKD+  NKR+ L+G 
Sbjct: 303  AERILDTILFPHIGTSPKDRIRKALFLGQMAAKLLEYVAGRRKEDDKDHYANKRVLLAGD 362

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV 434
            L++++F    + +  ++++ ++ + +   R     L   I  D IT  L   L+TGN+  
Sbjct: 363  LIAMVFRIAMRALAYDIRQQLEKLRA---RGRHISLRMIIRSDIITNRLREALATGNWPG 419

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            +R      G++Q+L R +++  L H+ RV  Q  +++     R +  +QWG +CP +TPE
Sbjct: 420  QR-----TGVSQILDRTNWLSMLSHLRRVVSQLSRTQPHFEARDVHGTQWGRICPFETPE 474

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED-LELLSG--EELHNPNSFL----V 547
            G  CGLVKNLALM +V+   ++  +  L Y +GV D +EL     ++ + P  ++    V
Sbjct: 475  GPNCGLVKNLALMAYVSAGVDDKDVEKLLYSMGVRDAVELFEEVRKQGYYPPEYIKWSKV 534

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV--NEKQRCVYIASDGGRVCRPLV 605
              NG ++G H   +  A+ +RKLRR+GK+   VSV V   E    VYI +D GR+ RP+ 
Sbjct: 535  FLNGRLIGYHPDGEKLAEELRKLRRSGKLHYEVSVSVYRTETINEVYINTDPGRIMRPVF 594

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            + + G    +  H ++L  G   F D +R G++E+LD  EE N  IAL   D TP+ TH+
Sbjct: 595  VVESGKLLYRPEHAEKLRKGEWRFSDLVRNGIVEFLDAEEEENTYIALNPEDLTPEHTHM 654

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EI P  I GV A  IPY  HNQSPRNTYQ AM KQA+G  A N   R+D+  +LL YP++
Sbjct: 655  EIWPAGIFGVTASTIPYAEHNQSPRNTYQAAMAKQALGLYAANFQIRVDTRSHLLHYPEK 714

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            PL+ TR +EL+GY+   AGQN  VAVMS++GY+IEDA++MNKSS+DRG  R    + Y  
Sbjct: 715  PLVQTRALELMGYNDRPAGQNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFRLYAT 774

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              ++Y    SD+I  P+    G++  ++          LD DG+ +P   +K  +V I K
Sbjct: 775  EERRYPGGLSDKIEIPEANVEGSKPPEMYKK-------LDADGIISPEVEVKGGEVLIGK 827

Query: 846  ESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
             SP           G    R R    T +   GE  VVD V +  +  G   +K  +R  
Sbjct: 828  TSPPRFMEEYRE-FGTVTVRKRDTSVTMR--HGEKGVVDTVIITENIEGYKLVKVRVRDQ 884

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R PELGDKF+SRHGQKGV G ++ Q D PF+E GI PDLI+NPH FPSRMT+G++ E + 
Sbjct: 885  RIPELGDKFASRHGQKGVIGMLIPQYDMPFTEDGITPDLIINPHAFPSRMTLGQLFETIA 944

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GK      RF  G+ F +     +++E++   L+K G++ +G +++Y G TG  ++  I 
Sbjct: 945  GKYAAIYARFVDGTPFAK-----ESIENLRIELLKTGYAPDGTEIMYDGRTGEMIRTPIL 999

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            +G +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR GEMERDCL+ +GA+ML
Sbjct: 1000 IGLVYYQKLHHMVADKIHARARGPVQVLTRQPTEGRAREGGLRFGEMERDCLVGHGAAML 1059

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ER++ SSD + + VC +CG + +++   +  IC    +   I+++ +PYA KLL+QEL
Sbjct: 1060 LRERMLESSDRYVLYVCELCGHIAWFDRNKRGYICPVHGDKGKIAAVIVPYAFKLLLQEL 1119

Query: 1146 QSMNIVPRLKLA 1157
             SM I+PRLKLA
Sbjct: 1120 MSMCIMPRLKLA 1131


>gi|315230005|ref|YP_004070441.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
 gi|315183033|gb|ADT83218.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
          Length = 1118

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1146 (38%), Positives = 666/1146 (58%), Gaps = 59/1146 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  +   +GLV+QHLDS+N F++ G+++++     I   I P+  ++F  +R+G+
Sbjct: 13   DLWSVMESYWNEKGLVRQHLDSYNAFIDHGMQEVINEFGGIKPDI-PNFEVKFGKIRLGE 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TYAAPI +  I  V G   E       +V IG +PIM
Sbjct: 72   PEFQEAQGQRKPLYPMDARIRNLTYAAPIYLEMIPVVNGIEQEPV-----EVRIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYGK E EL +LGE P DPGGYFII G+E+V++  E L+ NR +++ D++ + 
Sbjct: 127  LKSKACRLYGKSEEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEKDERQDK 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            + A   S     ++   ++  K G +Y+ +      +  + VM+A+G+ESD+E+V  +  
Sbjct: 187  VVAKCFSYRHGYRALIAVERRKDGLLYVSIPNVPGVVKFVYVMRALGLESDKEIVDAISD 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  DI TQE+AL+Y+    K++  G P   R  RA SI+ +  L 
Sbjct: 247  DPRIQQVLFDNLEDAS--DIQTQEEALDYIG---KKALPGQPREYRLRRAESIIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   +   K +Y+ +M  +++E  L     DDKD+  NKRL L+G L+  LF   F 
Sbjct: 302  HMGVRPEDRIKKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLRLAGDLLRDLFRVAFG 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+S+     T  +E  L+TG +        
Sbjct: 362  QLVKDMQYQLTKTYQRKGEKYVFENVQRFVRNSVRPDVLTERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  ++     LG+  +E    E   NP+ + V  NG+++G     
Sbjct: 477  VKNLALMAQITTAIPEEEVLKYLRKLGIVSIE----ERRPNPHVWRVYLNGVLIGTVEDG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
                + ++  RRAGKI + ++V   +  R VYI SD GRV RPL++ + G+ ++ + H++
Sbjct: 533  IALVNRIKADRRAGKISDVINVAYYDDVREVYINSDDGRVRRPLIVVENGVPKLTKEHVE 592

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             + +G  ++ D ++ G+IEYLD  EE NA +A +  + T + TH+E+ P  ILG+ A L+
Sbjct: 593  GIKNGTLTWSDLIKMGVIEYLDAEEEENAYVATWPWEVTKEHTHLELMPAAILGIPASLV 652

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HN +PRNTY   M KQ++G    N   R+D+  +LL YPQ PL+ +R ++ VG+++
Sbjct: 653  PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGFEE 712

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
              AGQN  VAV+SY GY++EDAIV+NK+S++RG  R    + Y A  +KY    +D+   
Sbjct: 713  RPAGQNFVVAVLSYQGYNMEDAIVINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEI 772

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETR----G 853
            PD T  G    +   H       LD+DG+  P   +   DV + + SP   LE +    G
Sbjct: 773  PDPTVRGYRGEKYYRH-------LDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSGLGG 825

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
             I+    +T    R +         E  VVD+V +    +G   +K  +R  R PELGDK
Sbjct: 826  IILQERRETSIAVRPS---------EKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDK 876

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     G
Sbjct: 877  FASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKG 936

Query: 974  RFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            R   G+AF GEP       E + + L + GF ++G++++Y GITG  L+A IF+G IYYQ
Sbjct: 937  RRIDGTAFIGEPE------EKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQ 990

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            +L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL+ 
Sbjct: 991  RLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLVERLLE 1050

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
             SD  EV VC  CG L   + +     C  C   + IS +++ YA KLL+ EL++M I P
Sbjct: 1051 ESDKTEVWVCETCGHLALEDKRRGQVYCPVCGETEKISKVEMSYAFKLLLDELKAMVIRP 1110

Query: 1153 RLKLAE 1158
             L+L E
Sbjct: 1111 ALRLKE 1116


>gi|375083053|ref|ZP_09730091.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
            5473]
 gi|374742289|gb|EHR78689.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
            5473]
          Length = 1118

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1142 (38%), Positives = 662/1142 (57%), Gaps = 51/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D ++++  +   +GLV+QHLDS+N F++ G++++V     +   I P   ++F  +R+G+
Sbjct: 13   DLWEVMKSYWDEKGLVRQHLDSYNAFIDHGMQEVVNEFGGVKPDI-PDFEVKFGRIRLGE 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+API +  I  V+G   E       +V IG +P+M
Sbjct: 72   PEFQEAHGQRKPLYPMDARIRNLTYSAPIFLEMIPVVKGIEQEPV-----EVRIGELPVM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL   GE P DPGGYFII G+E+V++  E L+ NR +++ D++ N 
Sbjct: 127  LKSKICRLYGLSDEELIAHGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEIDERQNR 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A   S     ++   ++  K G +Y+ +      I  + VM+A+G+ESD+E+V  V  
Sbjct: 187  YIAKCFSYRHGYRALITVERRKDGLLYVSIPNVPGVIKFVYVMRALGLESDKEIVDAVSN 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            +P    +L  ++E+ +  DI TQE+AL+Y+    K++  G P   R  RA SI+ +  L 
Sbjct: 247  NPEIQQVLFDNLEDAS--DIQTQEEALDYIG---KKAMPGQPKEYRLRRAQSIIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   +   K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 302  HMGVSPEDRIRKAYYLGMMALKVIELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFG 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F   Q  VR+S+     T  +E  L+TG +        
Sbjct: 362  QLVKDMQYQLTKTYQRKGEKYTFQDIQRFVRNSVRPDVLTERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +F+ TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNFMSTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM+ +TT   E  ++     LG+  +E    E+   P  + +  NG+++G ++  
Sbjct: 477  VKNLALMSQITTAIPEEEVLEYLESLGIVHIE----EKRPEPEDWRIYLNGVLIGTYKDG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
                + ++  RRAG+I + ++V   E  R VYI SD GRV RPL+I + GI ++   H++
Sbjct: 533  ISLVNKIKSDRRAGRISDVINVAYYEDVREVYINSDDGRVRRPLIIVEDGIPKLTREHVE 592

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             +  G   + D +R G+IEYLD  EE NA +A +  + T + TH+EI P  ILG+ A L+
Sbjct: 593  AIKKGTLKWSDLVRMGVIEYLDAEEEENAYVATWPWEVTKEHTHLEIMPAAILGLPASLV 652

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HN +PRNTY   M KQ++G    N   R+D+  +L+ YPQ PL+ +R +E VG+++
Sbjct: 653  PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQIPLVNSRIMEAVGFEQ 712

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
              AGQN  VAV+SY GY++EDA++MNK+S++RG  R    + Y A  +KY    +D+   
Sbjct: 713  RPAGQNFVVAVLSYGGYNMEDAVIMNKASIERGLARSTFFRTYEAEEKKYMGGQTDKFEI 772

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMS 857
            PD T  G    +   H       LD+DG+  P   ++  DV + + SP   LE +  + +
Sbjct: 773  PDPTVRGFLGEKYYRH-------LDEDGIIFPESKVEGKDVLVARTSPPRFLEEQAGLGA 825

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
              G    R R    T +   GE  +VD+V L    +G   +K  +R  R PE GDKF+SR
Sbjct: 826  --GILQGR-RETSITMR--PGEKGIVDKVILTETGDGTKLVKVTVRDLRIPEFGDKFASR 880

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR   
Sbjct: 881  HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRID 940

Query: 978  GSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            G+AF GEP       E + + L + GF +NG++++Y GITG  L+A IF+G IYYQ+L H
Sbjct: 941  GTAFIGEPE------EKLRKELEELGFRHNGREVMYDGITGRKLEADIFVGVIYYQRLHH 994

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GASML+ ERL+  SD 
Sbjct: 995  MVADKLHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGASMLLVERLLEESDK 1054

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             EV VC  CG L   + +     C  C   + IS +++ YA KLL+ E+++M I P LKL
Sbjct: 1055 TEVWVCESCGHLAVEDKRRDKVYCPVCGEEEKISKVEISYAFKLLLDEIKAMVIRPSLKL 1114

Query: 1157 AE 1158
             E
Sbjct: 1115 KE 1116


>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
 gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
          Length = 1122

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1148 (38%), Positives = 673/1148 (58%), Gaps = 61/1148 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K +GLV+QHLDS+N F++ G+++++     +   I P   ++F  VR+G+
Sbjct: 15   DLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPDI-PDFEVKFGKVRLGE 73

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+API +  I  V G      + E  +V IG +PIM
Sbjct: 74   PEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNG-----VSQEAVEVRIGELPIM 128

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL +LGE P DPGGYFI+ G+E+V++  E L+ N+ +++ D++ N 
Sbjct: 129  LKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDERQNR 188

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            I A   S     ++   ++  K G +Y+ L    + +  + VM+A+G+ SD+E+V+ V  
Sbjct: 189  IIAKCFSYRHGYRALITVERRKDGILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAVSD 248

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  D+ TQE+AL+Y+ GK+  S  G P   R  RA +I+ +  L 
Sbjct: 249  DPRIQHVLFDNLEDAS--DVTTQEEALDYI-GKL--SLPGQPKEYRLRRAQNIIDNNLLP 303

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   + + K +Y+ +M  R++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 304  HMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFG 363

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+SI     +  +E  L+TG++        
Sbjct: 364  QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSW-----PGG 418

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R ++I TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 419  RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGL 478

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM+ +TT   E  +      LGV  +E    E   NP+ + +  NG+++G     
Sbjct: 479  VKNLALMSQITTGVPEEEVREYLERLGVVPIE----ERRPNPDLWRLYLNGVLVGTVEDG 534

Query: 561  KCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            + F + +R  RR+GKI + ++V  + +E  + +Y+ SD GRV RPL+I + G  ++   H
Sbjct: 535  EGFVNRIRTDRRSGKISDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREH 594

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++ + +G  ++ D ++ G+IEYLD  EE NAL+A +  + T + TH+E+ P  ILG+ A 
Sbjct: 595  VEAIKNGSLTWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPAS 654

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN  PRNTY   M KQ++G    N   R+D+  +L+ YPQ PL+ +R ++ VG+
Sbjct: 655  LVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SY+GY++EDAI+MNK+S++RG  R    + Y A  ++Y    +DR 
Sbjct: 715  EERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 774

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETR--- 852
              PD T  G    +   H       LD+DG+  P   +   DV + + SP   LE +   
Sbjct: 775  EIPDPTIQGYLGERYYRH-------LDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGL 827

Query: 853  -GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
             G I+    +T    R +         ET VVD+V +    +G   +K   R  R PE G
Sbjct: 828  GGIILQERRETSLTVRPS---------ETGVVDKVIITETGDGTKLVKVTTRDLRIPEFG 878

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK    
Sbjct: 879  DKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASL 938

Query: 972  CGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
             GR   G+AF GEP       E + + L + GF ++G++++Y GITG  L+A +F+G IY
Sbjct: 939  KGRRVDGTAFIGEPE------EKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIY 992

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL
Sbjct: 993  YQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERL 1052

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            +  SD  EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I
Sbjct: 1053 LEESDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMGI 1112

Query: 1151 VPRLKLAE 1158
             P LKL +
Sbjct: 1113 RPSLKLVD 1120


>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
          Length = 1173

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1176 (37%), Positives = 663/1176 (56%), Gaps = 89/1176 (7%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVS---GIDPSIFLRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV        +A  +  S    +     L+F
Sbjct: 29   VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPIIELQAESQHTSTEVSVPTKYLLKF 88

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH-TEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I      H  +    +     
Sbjct: 89   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKHEAQPVETQHQKTF 148

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 149  IGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208

Query: 201  TDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIP 243
              K         I +S+ +S+    S  V  + +G           ++  ++    ++IP
Sbjct: 209  KKKDSKYAFTSEIRSSLENSSRPTSSMWVNMLARGGQGVKKSAIGQRITAIIPYIRQEIP 268

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            I++V +A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL ++  +  
Sbjct: 269  IIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGA 326

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            +   G     R   A  IL+   L +V + +     K +++  M+ R++ A L +  +DD
Sbjct: 327  KP--GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSAALGRRELDD 384

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVR 416
            +D+ GNKRL+L+G L++ LF  LF+ ++ EV    QK +D       R   F+L   I  
Sbjct: 385  RDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFID-------RGKDFNLELAIKT 437

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
              IT GL+ +L+TGN+ D K+    R G++QVL RL++  TL H+ R++    +  K++ 
Sbjct: 438  RIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPIGRDGKLAK 497

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  S WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE +S
Sbjct: 498  PRQLHNSLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIS 557

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIA 594
               + N     V  NG  +G HR P+   + +RKLRR   I    VS+  + ++R + I 
Sbjct: 558  PSAIANATKIFV--NGCWVGIHRDPEQLMNTLRKLRRQMDIIVSEVSMVRDIREREIRIY 615

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD--DFLREGLIEYLDVNEENNALIA 652
            +D GR+CRPL+I +     +K  H+ +L +   S+   D +  G++EY+D  EE   ++A
Sbjct: 616  TDAGRICRPLLIVENQKLLLKTRHIDQLKEDYNSYSWQDLVASGVVEYIDPLEEETIMLA 675

Query: 653  LYEGDAT-------PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
            ++  D            TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 676  MFPEDLQDKGEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 735

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YPQ+PL+TTR++E + + +L AG NA VA+ +Y+GY+ ED+I++
Sbjct: 736  ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAISTYTGYNQEDSIIV 795

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            NKSS+DRGF R +  + Y     K A    +   RP+R+     R  +          LD
Sbjct: 796  NKSSVDRGFFRSVFYRSYKDAENKSAYDQEETFERPERSFCTGMRHAIYDK-------LD 848

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD-------G 878
            DDGL +PG  +  +DV I K        ++M P  + +       Q +K  D        
Sbjct: 849  DDGLVSPGIRVSGDDVVIGK--------TVMLP--ENEDELEGTTQRFKKRDVSTFLRTS 898

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V +  +++G    K  +R  R P++GDKF+SRHGQKG CG   + ED PF+  
Sbjct: 899  ETGIVDQVMISINQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITYRAEDMPFTSE 958

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PDLI+NPH  PSRMT+G +IE + GK   + G     + F +       V+ IS  L
Sbjct: 959  GVQPDLIVNPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDTVN----VQKISNLL 1014

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++Y+G TG  L   +F GP YYQ+LKHMV DK+H+R  GP  +L RQP 
Sbjct: 1015 HEYGYQQRGNEVLYNGHTGRKLNTQVFFGPTYYQRLKHMVDDKIHSRARGPVQILNRQPM 1074

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP+ V VC +CGL+   N +    
Sbjct: 1075 EGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNLCGLIAIANLRSHTF 1134

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C  CKN  +IS +++PYACKLL QEL SM+I PR+
Sbjct: 1135 ECRGCKNKTHISQVRMPYACKLLFQELMSMSIAPRM 1170


>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Metaseiulus occidentalis]
          Length = 1178

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1167 (37%), Positives = 659/1167 (56%), Gaps = 69/1167 (5%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGI--DPSIF-LRF 82
            ++  +   +GLV+Q LDSF+ F+   ++KIV        +A     SGI   P+ + ++F
Sbjct: 27   VISAYFDEKGLVRQQLDSFDEFIQMSVQKIVEDTPPIELQAEATHSSGIIEQPTKYQVKF 86

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I + V     +    +     
Sbjct: 87   EQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDIIKTVIRDGEDPVETQHQKTF 146

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L G  + +L+ L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 147  IGKIPIMLRSSYCLLNGLSDRDLSELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 206

Query: 201  TDKKGNI------NASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIP 243
              K G         + +  S+    +  V  M +G           ++  +L    ++IP
Sbjct: 207  QMKDGKYAFKAECRSCIEHSSRPTSTLWVNMMARGGSGVKKASIGQRIIAILPYIKQEIP 266

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IM+V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  
Sbjct: 267  IMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGA 324

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            R   G    +R   A  IL+   L +V V +     K +Y+  M+ R++ A L +  +DD
Sbjct: 325  RP--GVTKANRIKYAREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDD 382

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            +D+ GNKRL+L+G L++ LF  LFK +  EV+      + K      F+L   I    IT
Sbjct: 383  RDHYGNKRLDLAGPLMAFLFRGLFKNLTKEVRMFAQKFIDK---GKDFNLELAIKTRIIT 439

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL+ +L+TGN+ D K+    R G++QVL RL++  TL H+ RV+    +  K++ PR L
Sbjct: 440  DGLKYSLATGNWGDQKKAHQARPGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQL 499

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM++++   +  P++       +E+LE ++   +
Sbjct: 500  HNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAI 559

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
                   V  NG  +G HR P+     ++KLRR   I    VS+  + + R + I +D G
Sbjct: 560  AEATKIFV--NGCWVGIHRDPEQLMLTLQKLRRQMDIIVSEVSMVRDIRDREIRIYTDAG 617

Query: 599  RVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I +     +K HH+ +L +      S+ D +  G++EY+D  EE   ++A+  
Sbjct: 618  RICRPLLIVENQKLLLKRHHIDKLKERECSYYSWQDLVASGVVEYIDTLEEETVMLAMTP 677

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D T D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 678  DDLTQDKALAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 737

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL TTR++E + + +L AG NA VA+MSY+GY+ ED++++N 
Sbjct: 738  NFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINAIVAIMSYTGYNQEDSVILNA 797

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S++DRGF R +  + Y     K      +   +P R      R       N +   LDDD
Sbjct: 798  SAVDRGFFRSVFYRSYKDSENKRMGDQEETFEKPTRETCQGMR-------NAIYDKLDDD 850

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +     T+ RY     +    + ET +VD+V 
Sbjct: 851  GIIAPGTRVSGDDVIIGKTITLPENDDDLD---STNKRYSKRDASTFLRNSETGIVDQVM 907

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  + +G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+N
Sbjct: 908  LTINSDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGVTYRQEDMPFTVEGLTPDIIIN 967

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK   + G     + F +    A  V+ IS  L+++G+   G
Sbjct: 968  PHAIPSRMTIGHLIECLQGKVASNKGEIGDATPFND----AVNVQKISNILMEYGYHLRG 1023

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1024 NEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1083

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC I++GA+  + ERL  +SDP+   +C +CGL+   N +     C  C+N  
Sbjct: 1084 RFGEMERDCQISHGAAQFLRERLFFASDPYRTHICNICGLIAIANLRNNIFECKGCRNKT 1143

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS + LPYACKLL QEL SMNI PR+
Sbjct: 1144 QISQITLPYACKLLFQELMSMNIAPRM 1170


>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
          Length = 1120

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1144 (38%), Positives = 672/1144 (58%), Gaps = 53/1144 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K +GLV+QHLDS+N FV+ G+++++     +   I P++ ++F  +R+G+
Sbjct: 13   DLWLVMESYWKEKGLVRQHLDSYNAFVDYGLQEVIDEFGGVKPDI-PNLEVKFGKIRVGE 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G    L P   R+ ++TY+AP+ +  I  V G   E       +  IG +PIM
Sbjct: 72   PVFQEAQGQRRPLYPMDARIRNLTYSAPLFLELIPVVNGIEQEPV-----EARIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C L+G  + EL +LGE P DPGGYFII G+E+V++  E L+ NR +++ D++   
Sbjct: 127  LKSKICRLHGLSDGELVKLGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVERDERQER 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            + A V S     ++   ++  K G +Y+ +    K +  + VM+A+G+ SD+E+V+ V  
Sbjct: 187  VIAKVFSYRHGYRALITVERRKDGILYVTIPNVSKPVKFVYVMRALGLLSDREIVEAVSD 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +LL ++E+ +  DI TQE AL+Y+ GK+  S  G P   R  RA  I+ +  L 
Sbjct: 247  DPRIQQILLDNLEDAS--DIRTQEDALDYI-GKL--SLPGQPKEYRLRRAEHIIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   N + K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 302  HMGVGPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFG 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ +++  +     +      F   Q  VR+SI     +  +E  L+TG++        
Sbjct: 362  QLVKDMEYQMTKTYQRKGERYTFQNIQRFVRNSIRPDVLSERIEHALATGSW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+   ++ +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  +      LG+  +E    E    P  + V  NG+++G   + 
Sbjct: 477  VKNLALMAQITTGLPEEKVRVYLEKLGIVPIE----ERRPAPGLYRVYLNGVLIGTVEKG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQ--RCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            +   + ++  RRAG+I + ++V + E+   R +YI SD GRV RPL+I + G  ++   H
Sbjct: 533  RELVERIKTDRRAGRISDVINVALYEEGDVREIYINSDDGRVRRPLIIVENGKPKLTREH 592

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++ + +G  ++ D +R G+IEYLD  EE NA +A +  + T + TH+E+ P  ILG+ A 
Sbjct: 593  VEGIKNGTLAWSDLIRMGVIEYLDAEEEENAYVATWPWEVTGEHTHLELMPAAILGIPAS 652

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN +PRNTY   M KQ++G  A N   R+D+  +LL YPQ PL+ +R ++ VG+
Sbjct: 653  LVPYPEHNAAPRNTYGAGMAKQSLGLGAANFRLRIDTRGHLLHYPQVPLVNSRIMKAVGF 712

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SY GY++EDA+++NK+S++RG GR    + Y A  ++Y    +DR 
Sbjct: 713  EERPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLGRSTFFRTYEAEEKRYLGGQTDRF 772

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSI 855
             +PD T  G   +   ++ N     LD+DG+  P   ++  DV + + SP   LE +G +
Sbjct: 773  EKPDPTIKGY--LGDRYYRN-----LDEDGIIFPESRVEGKDVLVGRTSPPRFLEEQGRL 825

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                G    + R        P  E  +VD+V +    +G   +K  +R  R PELGDKF+
Sbjct: 826  ----GGIALQERRETSVAARPS-EEGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFA 880

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR 
Sbjct: 881  SRHGQKGVVGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRR 940

Query: 976  HYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
              G+AF GEP       E +   L + GF +NG++++Y GITG  L+A IF+G IYYQ+L
Sbjct: 941  VDGTAFIGEPE------EKLRRELEELGFKHNGREILYDGITGRRLEAEIFVGVIYYQRL 994

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
             HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL+  S
Sbjct: 995  HHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEES 1054

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D  EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I P L
Sbjct: 1055 DKTEVWVCENCGHIALEDKRRDRVYCPVCGEEERISKVEISYAFKLLLDELKAMVIRPSL 1114

Query: 1155 KLAE 1158
            +L +
Sbjct: 1115 RLED 1118


>gi|390960609|ref|YP_006424443.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
 gi|390518917|gb|AFL94649.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
          Length = 1122

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1148 (38%), Positives = 668/1148 (58%), Gaps = 61/1148 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K RGLV+QHLDS+N F++ G+++++     +   I P   ++F  +R+G+
Sbjct: 15   DLWLVMEAYWKERGLVRQHLDSYNAFIDHGMQQVIDEFGGLKPDI-PDFEVKFGKIRLGE 73

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  ++G   E       +V IG +PIM
Sbjct: 74   PEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVIKGIEQEPV-----EVRIGELPIM 128

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E L+ N+ +++ D++ N 
Sbjct: 129  LKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNR 188

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            I A V S     ++   ++  K G +Y+ +    + +  + VM+A+G+ SD+E+V+ V  
Sbjct: 189  IIAKVFSYRHGYRALITVERRKDGILYVNIPNVPRPVKFVYVMRALGLLSDKEIVEAVSD 248

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  DI TQE+AL+Y+ GK+  S  G P   R  RA  I+ +  L 
Sbjct: 249  DPRIQQVLFDNLEDAS--DITTQEEALDYI-GKL--SLPGQPREYRLRRAEHIIDNNLLP 303

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V     R K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 304  HMGVEPERRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFG 363

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+SI     +  +E  L+TG +        
Sbjct: 364  QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGAW-----PGG 418

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 419  RTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGL 478

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  +      LGV  +E    E   NP+ + +  NG+++G     
Sbjct: 479  VKNLALMAQITTGIPEKEVREYLSKLGVVPIE----ERRPNPSLWRIYLNGVLIGTIEDG 534

Query: 561  KCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            +     +R  RR+G+I + ++V  + +E  + +Y+ SD GRV RPL+I + G  R+   H
Sbjct: 535  ESLVKRIRSDRRSGRISDVINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGKPRLTREH 594

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++ +  G  ++ D ++ G+IEYLD  EE NAL+A +  + T + TH+E+ P  ILG+ A 
Sbjct: 595  VEGIKTGQLTWSDLIKMGIIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPAS 654

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN +PRNTY   M KQ++G  A N   R+D+  +L+ YPQ PL+ +R ++ VG+
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SYSGY++EDA++MNK+S++RG  R    + Y A  ++Y    +DR 
Sbjct: 715  EERPAGQNFVVAVLSYSGYNMEDAVIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 774

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETR--- 852
              PD T  G    +   H       LD+DG+  P   +   DV + + SP   LE +   
Sbjct: 775  EVPDPTIQGYLGEKYYRH-------LDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSGL 827

Query: 853  -GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
             G I+    +T    R +         E  +VD+V +    +G   +K   R  R PELG
Sbjct: 828  GGIILQERRETSVTVRPS---------ERGIVDKVIITETGDGTKLVKITTRDLRIPELG 878

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK    
Sbjct: 879  DKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVAAL 938

Query: 972  CGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
             GR   G+AF GEP       E + + L + GF ++G++++Y GITG  L+A IF+G IY
Sbjct: 939  KGRRVDGTAFIGEPE------EKLRKELEELGFKHSGREIMYDGITGRRLEADIFVGVIY 992

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL
Sbjct: 993  YQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERL 1052

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            +  SD  EV VC  CG L   + +     C  C   + IS +++ YA KLL+ EL++M I
Sbjct: 1053 LEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1112

Query: 1151 VPRLKLAE 1158
             P L + +
Sbjct: 1113 RPSLNITD 1120


>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
          Length = 1175

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1174 (38%), Positives = 666/1174 (56%), Gaps = 91/1174 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I        +SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHISGEIENPPHYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + ++    E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEGEEPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFKT++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKTLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+  M R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              S WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNSLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVEGGSLLLKKKHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 798  NASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP-----DGET 880
            DDG+ +PG  +  +DV I K        +IM P  + +    + R T +       + ET
Sbjct: 851  DDGIISPGIRVSGDDVVIGK--------TIMLPETEDELEGTTKRFTKRDASTFLRNSET 902

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI
Sbjct: 903  GIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGI 962

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 1000
             PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L +
Sbjct: 963  TPDIIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQE 1018

Query: 1001 HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            +G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EG
Sbjct: 1019 YGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEG 1078

Query: 1061 RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1120
            RAR+GGLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C
Sbjct: 1079 RARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFEC 1138

Query: 1121 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              CKN   IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1139 KGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|341581876|ref|YP_004762368.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
 gi|340809534|gb|AEK72691.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
          Length = 1122

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1148 (38%), Positives = 668/1148 (58%), Gaps = 61/1148 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K RGLV+QHLDS+N F+ +G+++++     +   I P   ++F  +R+G+
Sbjct: 15   DLWLVMDAYWKERGLVRQHLDSYNAFIESGMQRVIYEFGGLKPDI-PDFEVKFGKIRLGE 73

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  ++G   E       +V IG +PIM
Sbjct: 74   PEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVIKGIEQEAV-----EVRIGELPIM 128

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E L+ N+ +++ D++ N 
Sbjct: 129  LKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNR 188

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            I A V S     ++   ++  K G +Y+ +    + +  + VM+A+G+ SD+E+V+ V  
Sbjct: 189  IIAKVFSYRHGYRALITVERRKDGILYVNIPNVPRPVKFVYVMRALGLLSDKEIVEAVSD 248

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  D+  QE AL+Y+ GK+  S  G P   R  RA  I+ +  L 
Sbjct: 249  DPRIQQVLFDNLEDAS--DVMNQEDALDYI-GKL--SLPGQPKEYRLRRAEHIIDNNLLP 303

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V     + K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 304  HMGVEPERRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFG 363

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+SI     +  +E  L+TG +        
Sbjct: 364  QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGAW-----PGG 418

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 419  RTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGL 478

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNL+LM+ +TT   E  +      LGV  +E    E   +P  + +  NG+++G     
Sbjct: 479  VKNLSLMSQITTGIPEEEVREYLNKLGVVSIE----ERRPSPELWRLYLNGVLIGTIEDG 534

Query: 561  KCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            +     +R  RR+GKI + ++V  + +E+ R VY+ SD GRV RPL+I + G  ++ + H
Sbjct: 535  ESLVRRIRSDRRSGKISDVINVAMYQDEEVREVYVNSDDGRVRRPLIIVENGKPKLTKEH 594

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            +  + +G  +++D ++ G+IEYLD  EE NA +A +  + T + TH+E+ P  ILG+ A 
Sbjct: 595  VDAIKNGALTWNDLVKMGIIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPAS 654

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN +PRNTY   M KQ++G  A N   R+D+  +L+ YPQ PL+ +R ++ VG+
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SY GY++EDAI+MNK+S++RG GR    + Y A  ++Y    +DR 
Sbjct: 715  EERPAGQNFVVAVLSYGGYNMEDAIIMNKASIERGLGRSTFFRTYEAEEKRYLGGQTDRF 774

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETR--- 852
              PD T  G    +   H       LD+DG+  P   +   DV + + SP   LE +   
Sbjct: 775  EVPDPTIQGYLGEKYYRH-------LDEDGIIFPESKVTGKDVLVGRTSPPRFLEEQSGL 827

Query: 853  -GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
             G I+    +T    R +         E  +VD+V +    +G   +K   R  R PE G
Sbjct: 828  GGIILQERRETSVTVRPS---------ERGIVDKVIITETGDGTKLVKVTTRDLRIPEFG 878

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK    
Sbjct: 879  DKFASRHGQKGVVGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVAAL 938

Query: 972  CGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
             GR   G+AF GEP       E + + L + GF ++G++++Y GITG  L+A IF+G IY
Sbjct: 939  TGRRVDGTAFIGEPE------EKLRKELEELGFKHSGREVMYDGITGRRLEADIFVGVIY 992

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL
Sbjct: 993  YQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERL 1052

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            +  SD  EV VC  CG L   + +     C  C   + IS +++ YA KLL+ EL++M I
Sbjct: 1053 LEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEEEKISKVEMSYAFKLLLDELKAMGI 1112

Query: 1151 VPRLKLAE 1158
             P LK+ +
Sbjct: 1113 RPSLKITD 1120


>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
 gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1188 (38%), Positives = 665/1188 (55%), Gaps = 90/1188 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI---------------VSGI 74
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I                SG 
Sbjct: 11   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNPGRNNEYSG- 69

Query: 75   DPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-EYV--QGSHTE 130
            + +  ++F  + + +P MT  DG +  L P   RL ++TY+AP+  +I +YV  +G   E
Sbjct: 70   ETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYVTRKGEDGE 129

Query: 131  KTTMEKN--DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
            + T ++    V IG++PIMLRS  C LY   + +L  LGECP D GGYFII G+EKVL+ 
Sbjct: 130  EDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKVLIA 189

Query: 189  QEQLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYL 233
            QE++S N V +   ++ N  A      S+  S     S   ++M           G+   
Sbjct: 190  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKAGSSGQYIR 249

Query: 234  LLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQE 289
                ++K+ IPI+VV +A+G  +D+++++ +  D   +A   LL PS+EE     I  Q+
Sbjct: 250  ATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEA--FVIQNQQ 307

Query: 290  KALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMV 349
             AL+Y+ GK + ST G     R   A  IL+   L +V V       K ++   ++ R++
Sbjct: 308  VALDYI-GK-RGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYIIHRLL 365

Query: 350  EAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRS 405
               L + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD         
Sbjct: 366  LCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVD-------NG 418

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-S 464
               +L+  +   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R+ S
Sbjct: 419  KEVNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNS 478

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
            P   + R ++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++    
Sbjct: 479  PIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLE 538

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
                E+ E +S   +  PN+  +  NG  +G HR P+     +R+LRR   +   V V  
Sbjct: 539  EWSTENFEEISPAVI--PNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVR 596

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYL 641
            + + + + + +D GR  RPL I +K    IK+  ++ L     G   + + + +G IEY+
Sbjct: 597  DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYV 656

Query: 642  DVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPR 690
            D  EE   +I++   D          A  DT TH EI P  ILGV   +IP+P HNQSPR
Sbjct: 657  DTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPR 716

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA
Sbjct: 717  NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 776

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            +  YSGY+ ED+++MN+SS+DRGF R I  + Y    +K      +   RP+R      R
Sbjct: 777  IACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMR 836

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
                H S      LDDDG+A PG  +   DV I K +PL     +   TG    RY    
Sbjct: 837  ----HGS---YDKLDDDGIAPPGTRVSGEDVIIGKTTPL-----VQDETGTQAQRYSKRD 884

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
            Q+      E+ ++D+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    Q
Sbjct: 885  QSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQ 944

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF++ GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      T
Sbjct: 945  EDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDV-----T 999

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V++IS+ L K  +   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP 
Sbjct: 1000 VDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPV 1059

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+  
Sbjct: 1060 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAI 1119

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             N K     C +CKN   I  + +PYACKLL QEL +M I PR+ + E
Sbjct: 1120 ANLKKNTFECRSCKNKTEIVQVHIPYACKLLFQELMAMAIAPRMFMKE 1167


>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
          Length = 1175

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1171 (38%), Positives = 660/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I      +G    +T  +K    IG
Sbjct: 93   LSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDPVETQHQK--TFIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 151  KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 210

Query: 203  K------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K      K  I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDSKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKI 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+  + R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 440  ITDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I D G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 618  AGRICRPLLIVDNGKLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED++
Sbjct: 736  VYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN S+++RGF R +  + Y     K      ++  RP R      R       N +   
Sbjct: 796  IMNASAVERGFFRSVFFRSYKDAESKRFCDQEEQFERPTRNTCQGMR-------NAIYDK 848

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +V
Sbjct: 849  LDDDGIIAPGVRVSGDDVVIGKTITLPDNEDELEGTTK---RYTKRDASTFLRNSETGIV 905

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD
Sbjct: 906  DQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPD 965

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+
Sbjct: 966  IIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGY 1021

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1022 QLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRAR 1081

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  C
Sbjct: 1082 DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNSTFECKGC 1141

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1142 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
          Length = 1179

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1203 (37%), Positives = 683/1203 (56%), Gaps = 87/1203 (7%)

Query: 6    VEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR 65
            ++  P D+Q  DK+++++ +      + ++  +   +GLV+Q LDSF+ F+   +++IV 
Sbjct: 7    MDEEPLDDQ-EDKEEISSELWQEA-CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE 64

Query: 66   ANDRI--------VSG---IDPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTY 113
             + +I         SG     P  FL+F+ + + +P+    DG    + P+  RL ++TY
Sbjct: 65   DSPQIDLQAEAQHTSGEIESPPKYFLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTY 124

Query: 114  AAPILVNIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
            +AP+ V+I  +    G +T +T  +K    IG+IPIMLRS  C+L G  + +L  L ECP
Sbjct: 125  SAPLYVDITKLVVKDGENTVETQHQK--TFIGKIPIMLRSTYCLLSGLSDRDLTELNECP 182

Query: 171  LDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI-----------NASVTSSTETVK 219
            LDPGGYFII G+EKVL+ QE+++ N V +   K G             ++S  +ST  V 
Sbjct: 183  LDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKFAYKAEIRSCQEHSSRPTSTLWVN 242

Query: 220  -----SKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYS 270
                  +++ +   G+  + +  ++K+ IPIM+V +A+G  +D+++++ +     DP   
Sbjct: 243  MMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 302

Query: 271  ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVH 330
             ++ PS++E     I  Q  AL ++  +  R   G     R   A  IL+   L +V V 
Sbjct: 303  EMVKPSLDEA--FVIQEQNVALNFIGARGARP--GVTKEKRIKYAREILQKEMLPHVGVS 358

Query: 331  NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISE 390
            +     K +++  M+ R++ A L++  +DD+D+ GNKRL+L+G L++ LF  LFK ++ E
Sbjct: 359  DFCETKKAYFLGYMVHRLLLAALSRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 418

Query: 391  V----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMT 445
            V    QK +D       R   F+L   I    IT GL  +L+TGN+ D K+    R G++
Sbjct: 419  VRMYAQKFID-------RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 471

Query: 446  QVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
            QVL RL+F  TL H+ RV+    +  K++ PR L  + WGM+CP +TPEG A GLVKNLA
Sbjct: 472  QVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 531

Query: 506  LMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFAD 565
            LM +++   +  P++       +E+LE ++   + +     V  NG  +G HR P+    
Sbjct: 532  LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAILDATKIFV--NGCWVGIHRDPEQLMS 589

Query: 566  VMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD 624
             +RKLRR   I    VS+  + + R + I +D GR+CRPL+I + G   +K+ H+  L D
Sbjct: 590  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKVHIDMLKD 649

Query: 625  GVRSFDDF-----LREGLIEYLDVNEENNALIALYEGDATPDT--------THIEIEPFT 671
              R ++++     +  G++EY+D  EE   +IA+   D   +         TH EI P  
Sbjct: 650  --RDYNNYGWQFLVSSGVVEYIDTLEEETVMIAMSPDDLNHEKEYAYCTTYTHCEIHPAM 707

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR
Sbjct: 708  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTR 767

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            ++E + + +L AG N+ VA+  Y+GY+ ED+++MN S+++RGF R I  + Y     K  
Sbjct: 768  SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYKDQESKKI 827

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
                ++  +P+R      R       N +   LDDDG+ APG  +  +DV I K   L  
Sbjct: 828  GDQEEQFEKPNRATCQGMR-------NAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPE 880

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
                +   G T    +    T+   + ET +VD+V +  +  G    K  +R  R P++G
Sbjct: 881  NDDELE--GSTKKYVKRDASTFLR-NSETGIVDQVMITLNSEGYKFSKIRVRSVRIPQIG 937

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS
Sbjct: 938  DKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VS 995

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
              +   G A   P   A  V+ IS  L ++G+   G +++Y+G TG  + A IF+GP YY
Sbjct: 996  ANKGEIGDA--TPFNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYY 1053

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+LKHMV DK+H+R  GP  +L RQP EGRAR+GGLR GEMERDC IA+GA+  + ERL 
Sbjct: 1054 QRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLF 1113

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
              SDP+ + VC  CGL+   N +     C  CKN   IS ++LPYA KLL QEL SMNI 
Sbjct: 1114 EVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIA 1173

Query: 1152 PRL 1154
            PRL
Sbjct: 1174 PRL 1176


>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
          Length = 1174

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1170 (38%), Positives = 656/1170 (56%), Gaps = 83/1170 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I    +           P   L+F+ + 
Sbjct: 32   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTAGEIENPPKYLLKFEQIY 91

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 92   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDKEEPIETQHQKTFIGKI 151

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 152  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 211

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 212  GKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 271

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 272  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAR--- 326

Query: 305  GSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
              P   RE R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+
Sbjct: 327  --PGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 384

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRD 417
            D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I   
Sbjct: 385  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLDLAIKTK 437

Query: 418  SITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             IT GL  +L+TGN+ D K+  M R G++QVL RL+F  TL H+ RV+    +  K++ P
Sbjct: 438  IITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 497

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++ 
Sbjct: 498  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 557

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIAS 595
              + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +
Sbjct: 558  SAIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYT 615

Query: 596  DGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
            D GR+CRPL+I + G   +K+HH   +KE       +   +  G++EY+D  EE   +IA
Sbjct: 616  DAGRICRPLLIVENGNLLLKKHHIDMLKEREHNNYGWQVLVASGVVEYIDTLEEETVMIA 675

Query: 653  LYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            +   D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG 
Sbjct: 676  MSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 735

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
               N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++
Sbjct: 736  YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 795

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            MN S+++RG  R +  + Y     K      ++  +P R      R       N L   L
Sbjct: 796  MNASAVERGLFRSVFYRSYKDSESKRNGDQEEQFEKPTRQTCQGMR-------NALYDKL 848

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            DDDG+ +PG  +  +DV I K   L      +  T +   RY     +    + ET +VD
Sbjct: 849  DDDGIISPGLRVSGDDVVIGKTITLPENEDELDGTTK---RYTKRDASTFLRNSETGIVD 905

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+
Sbjct: 906  QVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDI 965

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+ 
Sbjct: 966  IINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQ 1021

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+
Sbjct: 1022 LRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARD 1081

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC IA+GA+  + ERL   SDP+ + +C +CGL+   N +     C  CK
Sbjct: 1082 GGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNLCGLIAIANMRNNTFECKGCK 1141

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N   IS +KLPYA KLL QEL SMNI PRL
Sbjct: 1142 NKTQISQVKLPYAAKLLFQELMSMNIAPRL 1171


>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
          Length = 1194

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1198 (37%), Positives = 683/1198 (57%), Gaps = 76/1198 (6%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            MQ +G+  DE+  D+    +P       + ++  +   +GLV+Q LDSF+ FV   +++I
Sbjct: 9    MQDDGN--DEEYSDETAEISPDAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRI 66

Query: 64   VR---------ANDRIVSGID-PSIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDM 111
            V           N  + + ++ P+ F L+F  + + +P+    DG    + P+  RL ++
Sbjct: 67   VEDSPPVELQSENQHLGNDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNL 126

Query: 112  TYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPL 171
            TYA+P+ V+I  V              V +G++P+MLRS  C+L    + +L  L ECPL
Sbjct: 127  TYASPLYVDITKVVTRDESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPL 186

Query: 172  DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI------NASVTSSTETVKSKTVIQ 225
            DPGGYF+I G+EKVL+ QE+++ N V + + K G         + + +S+    +  V  
Sbjct: 187  DPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNM 246

Query: 226  MEKG-----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSA 271
            + +G           ++  +L    ++IPIM+V +A+G  SD++++  +     DP    
Sbjct: 247  LARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFEDPEMME 306

Query: 272  LLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR---AFSILRDVFLANV 327
            ++ PS++E     I  Q  AL ++  +      G+ P   RE R   A  IL+   L +V
Sbjct: 307  MVKPSLDEA--FVIQEQNVALNFIGAR------GAKPGVTREQRIKYAREILQKELLPHV 358

Query: 328  PVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTM 387
             V  +    K F++  M+ R++ A L +  +DD+D++GNKRL+L+G L++ LF  LF+ +
Sbjct: 359  GVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFRNL 418

Query: 388  ISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQ 446
            + E++ T    ++K   +  F L   +   +IT GL  +L+TGN+ D K+    R G++Q
Sbjct: 419  LKEMRMTAQKYINK---NDDFALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQ 475

Query: 447  VLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
            VL RL++  TL H+ R +    +  K++ PR L  +QWGM+CP +TPEG+A GLVKNLAL
Sbjct: 476  VLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLAL 535

Query: 507  MTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADV 566
            M +++      P++       +E+LE +S   + +     V  NG  +G HR P+   D 
Sbjct: 536  MAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFV--NGAWVGIHREPELLMDT 593

Query: 567  MRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD- 624
            ++KLRR   I    VS+  + + R + I +D GRVCRPL+I +K    +++ H+  L D 
Sbjct: 594  LKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEKQKLALRKRHIDLLKDV 653

Query: 625  ---GVRSFDDFLREGLIEYLDVNEENNALIALYEGDATP----DT-THIEIEPFTILGVI 676
                  ++ D +  G++E +D  EE  ++IA+   D       DT TH EI P  ILGV 
Sbjct: 654  DETKKYTWSDLVGNGVVELIDSMEEETSMIAMMPEDLRSGGYCDTYTHCEIHPAMILGVC 713

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E +
Sbjct: 714  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYL 773

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             +++L AG NA VA++SYSGY+ ED+++MN S++DRG  R +  + Y        N+  +
Sbjct: 774  RFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANIDNANEE 833

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
             I +P R     E+   + HS  L   LD+DG+ +PG  +  +DV I K   L      +
Sbjct: 834  LIEKPTR-----EKCSGMRHS--LYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDL 886

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              TG+   + R A    +    ET +VD+V L  + +G+  +K  +R  R P++GDKF+S
Sbjct: 887  DATGKKYPK-RDASTFLRS--SETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFAS 943

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG  G + +QED PF+  G+ PD+I+NPH  PSRMT+G +IE L GK   + G   
Sbjct: 944  RHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIG 1003

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F +       V+ IS  L ++G+   G +++Y+G TG  L   IF GP YYQ+LKH
Sbjct: 1004 DATPFNDTV----NVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKH 1059

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  M+ RQP EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP
Sbjct: 1060 MVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDP 1119

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            + V VC  CGL+   N +  +  C  C+N   +S++++PYACKLL QEL SM+I PRL
Sbjct: 1120 YHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1177


>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
 gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1188 (38%), Positives = 664/1188 (55%), Gaps = 90/1188 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI---------------VSGI 74
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I                SG 
Sbjct: 11   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNPGRNNEYSG- 69

Query: 75   DPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-EYV--QGSHTE 130
            + +  ++F  + + +P MT  DG +  L P   RL ++TY+AP+  +I +YV  +G   E
Sbjct: 70   ETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYVTRKGEDGE 129

Query: 131  KTTMEKN--DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
            + T ++    V IG++PIMLRS  C LY   + +L  LGECP D GGYFII G+EKVL+ 
Sbjct: 130  EDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKVLIA 189

Query: 189  QEQLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYL 233
            QE++S N V +   ++ N  A      S+  S     S   ++M           G+   
Sbjct: 190  QEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKAGSSGQYIR 249

Query: 234  LLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQE 289
                ++K+ IPI+VV +A+G  +D+++++ +  D   +A   LL PS+EE     I  Q+
Sbjct: 250  ATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEA--FVIQNQQ 307

Query: 290  KALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMV 349
             AL+Y+ GK + ST G     R   A  IL+   L +V V       K ++   ++ R++
Sbjct: 308  VALDYI-GK-RGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYIIHRLL 365

Query: 350  EAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRS 405
               L + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD         
Sbjct: 366  LCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVD-------NG 418

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-S 464
               +L+  +   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R+ S
Sbjct: 419  KEVNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNS 478

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
            P   + R ++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++    
Sbjct: 479  PIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLE 538

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
                E+ E +S   +  PN+  +  NG  +G HR P+     +R+LRR   +   V V  
Sbjct: 539  EWSTENFEEISPAVI--PNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVR 596

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYL 641
            + + + + + +D GR  RPL I +K    IK+  ++ L     G   + + + +G IEY+
Sbjct: 597  DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYV 656

Query: 642  DVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPR 690
            D  EE   +I++   D          A  DT TH EI P  ILGV   +IP+P HNQSPR
Sbjct: 657  DTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPR 716

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA
Sbjct: 717  NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 776

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            +  YSGY+ ED+++MN+SS+DRGF R I  + Y    +K      +   RP+R      R
Sbjct: 777  IACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMR 836

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
                H S      LDDDG+A PG  +   DV I K +PL         TG    RY    
Sbjct: 837  ----HGS---YDKLDDDGIAPPGTRVSGEDVIIGKTTPL-----AQDETGTQAQRYSKRD 884

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
            Q+      E+ ++D+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    Q
Sbjct: 885  QSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQ 944

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF++ GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      T
Sbjct: 945  EDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDV-----T 999

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V++IS+ L K  +   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP 
Sbjct: 1000 VDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPV 1059

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+  
Sbjct: 1060 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAI 1119

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             N K     C +CKN   I  + +PYACKLL QEL +M I PR+ + E
Sbjct: 1120 ANLKKNTFECRSCKNKTEIVQVHIPYACKLLFQELMAMAIAPRMFMKE 1167


>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
          Length = 1175

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1180 (38%), Positives = 660/1180 (55%), Gaps = 83/1180 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGID-----P 76
            D + ++  + + +GLV+Q LDSFN F+NT +++IV  N  I        V G+       
Sbjct: 21   DAWAVISAYFEEKGLVRQQLDSFNDFINTSLQEIVDENKLISITPQSQHVPGMQVEDDVE 80

Query: 77   SIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIE------YVQGSH 128
             IF + F  + + +P  +  DG +  L P   RL ++TYAAP+ V+IE      +  GS 
Sbjct: 81   KIFEVEFGQIYLSKPVFIEADGETAVLFPKEARLRNLTYAAPLYVDIERRDKVVHSDGSE 140

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
              + T     V +G +PIMLRS  C L G+ E +L  LGECP D GGYF+I G+EKVL+ 
Sbjct: 141  EVEVTPYPK-VFLGDVPIMLRSDYCNLSGRSERDLCDLGECPYDQGGYFVINGSEKVLIA 199

Query: 189  QEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEK------GKMYLLL 235
            QE+++ N V +    +           + V  ST TV +  V  + +      G+     
Sbjct: 200  QERMANNHVYVFRKSQPSKYAYVAECRSVVEGSTRTVSTMQVKMLSRAGQKGAGQCIRAS 259

Query: 236  NQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSAL---LLPSIEECANLDIYTQEKA 291
              +V+  IPI+++ +A+G  +D+++++ +  D   + +   L PSIEE     I +QE A
Sbjct: 260  IPYVRADIPILIIFRALGFVADKDILEHIVYDFGDTTMMEALRPSIEEA--FPIQSQEVA 317

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + ST G+  N R   A  +L+   L +V +       K ++   ++ R++  
Sbjct: 318  LDYI-GK-RGSTIGATRNARIQYARELLQKELLPHVGMEEFCETKKAYFFGYVIHRLLLV 375

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L +   DD+D+ GNKRL+L G L++ LF  LF+ +  +V+  V   + K       +L+
Sbjct: 376  ALGRREEDDRDHYGNKRLDLGGPLLANLFRQLFRKLSKDVRGYVQKCVDK---GKEINLT 432

Query: 412  QFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
              I +D+IT GL  +L+TGN+ V      R G++QVL RL++  TL H+ R++    +  
Sbjct: 433  SAINKDTITRGLRYSLATGNWGVVGAGEVRPGVSQVLNRLTYASTLSHLRRINSPIGREG 492

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALMT+++      P++        EDL
Sbjct: 493  KIAKPRQLHNSQWGMICPAETPEGQACGLVKNLALMTYISVGCASNPVLDFLQEWATEDL 552

Query: 532  ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCV 591
            E +S   +  P +  +  NG+ +G HR P+   + +R +RR   I   V V  + + + +
Sbjct: 553  EEISPSVI--PKATKIFVNGVWVGIHRDPQTLVETLRAMRRQVDISTEVGVVHDIRLQEL 610

Query: 592  YIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS---FDDFLREGLIEYLDVNEENN 648
             + +D GR CRPL I +    ++K+  +  L +   +   +   +  G IEY+DV EE  
Sbjct: 611  RLYTDYGRCCRPLFIVEDQAVKVKKRDIINLQNREETGFTWQSMIEAGYIEYVDVEEEET 670

Query: 649  ALIALYEGD----------ATPDT----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
             +IA++  D          AT  +    TH EI P  ILGV A ++P+P HNQSPRNTYQ
Sbjct: 671  TMIAMFINDLRLARIAEDAATASSIALYTHCEIHPAMILGVCASIVPFPDHNQSPRNTYQ 730

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQAMG    N   RMD+  Y+L YPQ+PL+TTR +E + + +L AG N  VA+  Y
Sbjct: 731  SAMGKQAMGMYVTNYQVRMDTQGYVLFYPQKPLVTTRNMEYLHFRELPAGINTIVAIACY 790

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVV 814
            SGY+ ED+ +MN+SS+DRG  R I  + Y    +K  +   + I RP+R      R    
Sbjct: 791  SGYNQEDSTMMNQSSIDRGIFRSIFFRSYKTEEKKQGSLVQESIERPNREITAGTRHGTY 850

Query: 815  HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK 874
                     LDDDG+A PG  +  +D+ I K SP+   GS +        RY     +  
Sbjct: 851  DK-------LDDDGIAPPGTRVSGDDIVIGKTSPIPDDGSGLP------QRYSKKDASTA 897

Query: 875  GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 934
                E+ ++D V + +  +G   +K  +R  R P++GDKF+SRHGQKG  G    QED P
Sbjct: 898  LRHSESGMIDSVLVTTGADGQRFVKMRVRSVRIPQVGDKFASRHGQKGTIGITYTQEDMP 957

Query: 935  FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 994
            FS  GI PDLI+NPH  PSRMT+G ++E L  K     G+    + F      + TV++I
Sbjct: 958  FSAEGISPDLIINPHAIPSRMTIGHLVEALMSKVAACMGKEGDATPFT-----SVTVDNI 1012

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
            S  L + G+   G +++Y+G TG  LQA IF+ P YYQ+LKHMV DK+H+RG GP  +LT
Sbjct: 1013 SAALHRCGYQSRGWEVMYNGHTGRQLQAQIFLNPTYYQRLKHMVDDKIHSRGRGPVQILT 1072

Query: 1055 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHK 1114
            RQP EGRAR+GGLR GEMERDC+I++GA+  + ERL   SD + V VC VCGL+   N K
Sbjct: 1073 RQPVEGRARDGGLRFGEMERDCIISHGAAAFLKERLYDQSDAYRVHVCSVCGLIAVANLK 1132

Query: 1115 LKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                 C+ CKN   I  + +PYACKLL QEL +M I PR+
Sbjct: 1133 KNQFYCTACKNTTGIVQVFIPYACKLLFQELMAMCIAPRM 1172


>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
          Length = 1176

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1171 (38%), Positives = 661/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I      +G    +T  +K    IG
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDPIETQHQK--TFIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 151  KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 210

Query: 203  K------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K      K  I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAILPYIKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKI 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+  + R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 440  ITDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I D G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 618  AGRICRPLLIVDNGRLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED++
Sbjct: 736  VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN S+++RGF R +  + Y     K      ++  +P RT     R       N +   
Sbjct: 796  IMNASAVERGFFRSVFFRSYKDAESKRICDQEEQFEKPTRTTCQGMR-------NAIYDK 848

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +V
Sbjct: 849  LDDDGIIAPGIRVSGDDVVIGKTITLPDNDDELEGTTK---RYTKRDASTFLRNSETGIV 905

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD
Sbjct: 906  DQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPD 965

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+
Sbjct: 966  IIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGY 1021

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1022 QLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRAR 1081

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  C
Sbjct: 1082 DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNSTFECKGC 1141

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1142 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
          Length = 1174

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1168 (38%), Positives = 668/1168 (57%), Gaps = 80/1168 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGI---DPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHSSGEVENPPRYVLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E+   +     IG+I
Sbjct: 93   LSKPTHWEKDGAPTAMMPNEARLRNLTYSAPLYVDITKTVHKEGEEQVETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G ++ +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLNGMNDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  + +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAYKTEIRSCLEHSSRPTSTLYVNMLARGGQGIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFKT++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLMAFLFRALFKTLMKEVRMYAQKFID-------RGKDFNLELAIKTRIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHM-----KELLDGVRSFDDFLREGLIEYLDVNEENNALIA- 652
            R+CRPL+I +     +K+ H+     +E ++   S+ + +  G++EY+D  EE  A+IA 
Sbjct: 620  RICRPLLIVENCKLLLKKRHVDMLKQREYINF--SWQELVATGVVEYIDTLEEETAMIAM 677

Query: 653  ----LYEG-DATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
                L +G DA   T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG   
Sbjct: 678  SPEDLRQGKDAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 737

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA++SY+GY+ ED+++MN
Sbjct: 738  TNFHVRMDTLAHVLQYPQKPLVTTRSMEYLRFRELPAGINSVVAILSYTGYNQEDSVIMN 797

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
             S+++RGF R +  + Y     K +    +   +P R      R       N +   LDD
Sbjct: 798  ASAVERGFFRSVFFRSYKDQESKRSADQEETFEKPFRDHCQGMR-------NAIYDKLDD 850

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DG+ APG  +  +DV I K   L      +  T +  S+ R A    +    ET +VD+V
Sbjct: 851  DGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKFSK-RDASTFLR--HSETGIVDQV 907

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L  +  G+   K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+
Sbjct: 908  MLTLNAEGNKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 967

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+   
Sbjct: 968  NPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLQEYGYHLR 1023

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GG
Sbjct: 1024 GNEVLYNGHTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 1083

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126
            LR GEMERDC IA+GA+  + ERL   SDP+ + VC +CG++   N +     C  CKN 
Sbjct: 1084 LRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGIIAVANLRNNTFECKGCKNK 1143

Query: 1127 DNISSMKLPYACKLLIQELQSMNIVPRL 1154
              IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 TQISQVRLPYAAKLLFQELMSMNIAPRL 1171


>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
          Length = 1174

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1169 (38%), Positives = 659/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 31   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIETPPHYLLKFEQIY 90

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKNDVVIG 142
            + +P+    DG +  + P+  RL ++TY+AP+ V+I      +G    +T  +K    IG
Sbjct: 91   LSKPTHWEKDGAAAAMMPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQK--TFIG 148

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 149  KIPIMLRSTYCLLNGLIDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 208

Query: 203  K------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K      K  I + +  S+    +  V  M +G           ++  ++    ++IPIM
Sbjct: 209  KDGKFAFKAEIRSCLEHSSRPTSTLWVNMMSRGGQSIKKNAIGQRIIAIVPYIKQEIPIM 268

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R 
Sbjct: 269  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP 326

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 327  --GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 384

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 385  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKI 437

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 438  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 497

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 498  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 557

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 558  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 615

Query: 597  GGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
             GR+CRPL+I D GI  +K+ H   +KE      S+   +  G++EY+D  EE   +IA+
Sbjct: 616  AGRICRPLLIVDNGILLLKKRHIDMLKERDLNNYSWQVLVASGVVEYIDTLEEETVMIAM 675

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 676  SPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 735

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 736  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 795

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P RT     R       N L   LD
Sbjct: 796  NASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRTTCQGMR-------NALYDKLD 848

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +VD+
Sbjct: 849  DDGIIAPGIRVSGDDVVIGKTITLPENDDELDGTTK---RYTKRDASTFLRNSETGIVDQ 905

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 906  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 965

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 966  INPHAIPSRMTIGHLIECIQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYHL 1021

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1022 RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1081

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1082 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1141

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1142 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1170


>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
            KOD1]
 gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
            KOD1]
          Length = 1123

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1147 (38%), Positives = 671/1147 (58%), Gaps = 58/1147 (5%)

Query: 30   DKFQLLPE-FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIG 88
            D+  L+ E + K +G V+QHLDS+N F++ G++ +V     +V  I P+  ++F  +RIG
Sbjct: 15   DELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDI-PNFKVKFGKIRIG 73

Query: 89   QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPI 146
            QP      G    L P   R+ ++TY+AP+ +  I  V G   E       +V IG +PI
Sbjct: 74   QPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPV-----EVRIGELPI 128

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E L+ N+ +++ D++ N
Sbjct: 129  MLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQN 188

Query: 207  -INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             + A V S     ++   ++ +K G +Y+ +    K +  + VM+A+G+ +D+E+V+ V 
Sbjct: 189  KVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVS 248

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DPR   +L  ++E+ +  DI TQE+AL+Y+ G++  +  G P   R  RA  I+ +  L
Sbjct: 249  DDPRIQQVLFDNLEDAS--DISTQEEALDYI-GRL--ALPGQPKEYRLRRAEHIIDNNLL 303

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++ V   N R K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F
Sbjct: 304  PHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAF 363

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKM 439
              ++ ++Q  +     +      F+  Q  VR+SI     +  +E  L+TG++       
Sbjct: 364  GQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSW-----PG 418

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             R G++Q+L R +++ TL H+ RV+    + +     R L  + WG +CP +TPEG  CG
Sbjct: 419  GRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCG 478

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALM+ +TT   E  +      +GV  +E    E    P  + V  NG+++G    
Sbjct: 479  LVKNLALMSQITTGIPEREVREYLMKMGVVPIE----ERRPAPGLYRVYLNGVLIGTVED 534

Query: 560  PKCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
             +   + +R  RRAGKI + ++V  + +E+ + VYI SD GRV RPL++ + G  ++   
Sbjct: 535  GRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTRE 594

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            H++ + +G  ++ D +R G+IEYLD  EE NA +A +  + T + TH+E+ P  ILG+ A
Sbjct: 595  HVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPA 654

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             L+PYP HN +PRNTY   M KQ++G    N   R+D+  +L+ YPQ PL+ +R ++ VG
Sbjct: 655  SLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG 714

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            ++   AGQN  VAV+SY GY++EDA+++NK+S++RG  R    + Y A  ++Y     D 
Sbjct: 715  FEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDN 774

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGS 854
               P     G    +   H       LD+DGL  P   ++  DV + + SP   +E + S
Sbjct: 775  FEVPSPNIQGYLGEKYYRH-------LDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSS 827

Query: 855  I--MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
            +  M   G+ ++   + R + KG      VVD+V +    +G   +K  +R  R PELGD
Sbjct: 828  LGSMVLQGRRETSV-TVRPSEKG------VVDKVIVTETGDGTKLVKVTVRDLRIPELGD 880

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KF+SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     
Sbjct: 881  KFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLT 940

Query: 973  GRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
            GR   G+AF GEP       E + + L + GF ++G++++Y GITG  L+A IF+G IYY
Sbjct: 941  GRRVDGTAFIGEPE------EKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYY 994

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL+
Sbjct: 995  QRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLL 1054

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
              SD  EV VC  CG L   + +     C  C   + IS +++ YA KLL+ EL++M I 
Sbjct: 1055 EESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIR 1114

Query: 1152 PRLKLAE 1158
            P L+L +
Sbjct: 1115 PSLRLKD 1121


>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
          Length = 1174

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1199 (37%), Positives = 676/1199 (56%), Gaps = 98/1199 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            +I       G   ++T  +K    IG+IPIMLRS  C+L G  + +L  L ECPLDPGGY
Sbjct: 127  DITKTIIKDGEEQQQTQHQK--TFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGY 184

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG- 229
            FII G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  M +G 
Sbjct: 185  FIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGG 244

Query: 230  ----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                      ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS
Sbjct: 245  QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            ++E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     
Sbjct: 305  LDEA--FVIQEQNVALNFIGSRGAKP--GVTKERRIKYAKEVLQKEVLPHVGVSDFCETK 360

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ E+    Q
Sbjct: 361  KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ 420

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARL 451
            K +D       R   F+L   I    I+ GL+ +L+TGN+ DVK+    R G++QVL RL
Sbjct: 421  KFID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRL 473

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            +F  TL H+ RV+    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++
Sbjct: 474  TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS 533

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLR
Sbjct: 534  VGSQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLR 591

Query: 572  RAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVR 627
            R   I    VS+  + ++R + I +D GR+CRPL+I +K    +K  H+ +L +      
Sbjct: 592  RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNY 651

Query: 628  SFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGV 675
            S+ D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV
Sbjct: 652  SWQDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGV 706

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E 
Sbjct: 707  CASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEY 766

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      
Sbjct: 767  LRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQE 826

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            +   +P R     E  Q + H+  +   LDDDGL APG  +   DV I K   L      
Sbjct: 827  EIFEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDE 879

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
            +     T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+
Sbjct: 880  LD---STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFA 936

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMTVG +IE L GK  VS  + 
Sbjct: 937  SRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSANKG 994

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
              G A   P   A  V+ +S  L ++G+   G +++Y+G TG  L + IF+GP YYQ+LK
Sbjct: 995  EIGDA--TPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLK 1052

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SD
Sbjct: 1053 HMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASD 1112

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            P++V VC +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1113 PYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
            EJ3]
 gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
            gammatolerans EJ3]
          Length = 1122

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1145 (38%), Positives = 667/1145 (58%), Gaps = 55/1145 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K +GLV+QHLDS+N F+  G+++++     +   I P+  ++F  +R+G+
Sbjct: 15   DLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI-PNFEVKFGKIRLGE 73

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G    L P   R+ ++TY+AP+ +  I  V G   E       +V IG +P+M
Sbjct: 74   PIFQEAQGQRRPLYPMDARIRNLTYSAPLFLELIPVVNGIEQEPV-----EVRIGELPLM 128

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD-KKGN 206
            L+S  C LYG  + EL  LGE P DPGGYFII G+E+V++  E L+ N+ +++ D ++  
Sbjct: 129  LKSKACRLYGLSDEELIELGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVEKDERQKK 188

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            + A V S     ++   ++  K G +Y+ +    K +  + VM+A+G+ SD+E+V+ +  
Sbjct: 189  VVAKVFSYRHGYRALITVESRKDGILYVSIPNVPKPVKFVYVMRALGLLSDKEIVEAISE 248

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  DI TQE+AL+++ G++  S  G P   R  RA  I+ +  L 
Sbjct: 249  DPRIQQVLFNNLEDAS--DIRTQEEALDFI-GRL--SLPGQPKEYRLRRAEHIIDNNLLP 303

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   N + K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 304  HMGVEPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFG 363

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+S+     +  +E  L+TG++        
Sbjct: 364  QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSVRPDVLSERIEHALATGSW-----PGG 418

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R ++I TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 419  RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGL 478

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM+ +TT   E  +      LGV  +E    E   +P  + V  NG+++G     
Sbjct: 479  VKNLALMSQITTGIPEEEVKEYILKLGVVPIE----ERRPSPGLYRVYLNGVLIGTIEDG 534

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQ--RCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            K     +R  RRAGKI + ++V + E+   R +YI SD GRV RPL+I + G  ++   H
Sbjct: 535  KALVQTIRSDRRAGKISDVINVALYEEGDVREIYINSDDGRVRRPLIIVENGRPKLTREH 594

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++ + +G  ++ D +R G+IEYLD  EE NA +A +  + T + TH+E+ P  ILG+ A 
Sbjct: 595  VEAIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPAS 654

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN +PRNTY   M KQ++G    N   R+D+  +L+ YPQ PL+ +R ++ VG+
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SY GY++EDAIV+NK+S++RG  R    + Y A  ++Y     DR 
Sbjct: 715  EERPAGQNFVVAVLSYGGYNMEDAIVINKASIERGLARSTFFRTYEAEEKRYLGGQMDRF 774

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSI 855
             +PD T  G   +   ++ N     LD+DG+  P   ++  DV + + SP   LE +  +
Sbjct: 775  EKPDPTIKGY--LGDRYYRN-----LDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGL 827

Query: 856  MSPTGQTDSRYRSA-RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                 Q       A R + KG      +VD+V +    +G   +K  +R  R PELGDKF
Sbjct: 828  GGIALQERRETSVAVRPSEKG------IVDKVIITETGDGTKLVKVTVRDLRIPELGDKF 881

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR
Sbjct: 882  ASRHGQKGVIGLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGR 941

Query: 975  FHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
               G+AF GEP       E + + L + GF + G++++Y GITG  L+A IF+G IYYQ+
Sbjct: 942  RVDGTAFIGEPE------EKLRKELEELGFKHTGREVMYDGITGRRLEADIFIGVIYYQR 995

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ERL+  
Sbjct: 996  LHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEE 1055

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD  EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I P 
Sbjct: 1056 SDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPS 1115

Query: 1154 LKLAE 1158
            LKL +
Sbjct: 1116 LKLKD 1120


>gi|223478302|ref|YP_002582840.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
 gi|214033528|gb|EEB74355.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
          Length = 1122

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1145 (38%), Positives = 667/1145 (58%), Gaps = 55/1145 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K +GLV+QHLDS+N F+  G+++++     +   I P+  ++F  +R+G+
Sbjct: 15   DLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDI-PNFEVKFGKIRLGE 73

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G    L P   R+ ++TY+AP+ +  I  V G   E       +V IG +P+M
Sbjct: 74   PIFQEAQGQRRPLYPMDARIRNLTYSAPLFLELIPVVNGIEQEPV-----EVRIGELPLM 128

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL  LGE P DPGGYFII G+E+V++  E L+ N+ +++ D++ N 
Sbjct: 129  LKSKACRLYGLSDEELIELGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNK 188

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            + A V S     ++   ++  K G +Y+ +    K +  + VM+A+G+ SD+E+V+ +  
Sbjct: 189  VVAKVFSYRHGYRALITVESRKDGILYVSIPNVPKPVKFVYVMRALGLLSDKEIVEAISE 248

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  DI TQE+AL+++ G++  S  G P   R  RA  I+ +  L 
Sbjct: 249  DPRIQQVLFNNLEDAS--DIRTQEEALDFI-GRL--SLPGQPKEYRLRRAEHIIDNNLLP 303

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   N + K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 304  HMGVEPENRKAKAYYLGMMALKVLELALGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFG 363

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+S+     +  +E  L+TG++        
Sbjct: 364  QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSVRPDVLSERIEHALATGSW-----PGG 418

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R ++I TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 419  RTGVSQLLDRTNYISTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGL 478

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  +      LGV  +E    E   +P  + V  NG+++G     
Sbjct: 479  VKNLALMAQITTGIPEEEVREYLLKLGVVPIE----ERRPSPGLYRVYLNGVLIGTIEDG 534

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQ--RCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            K     +R  RRAGKI + ++V + E++  R +Y+ SD GRV RPL+I + G  ++   H
Sbjct: 535  KALVQTIRSDRRAGKISDVINVAIYEEEDVREIYVNSDDGRVRRPLIIVENGKPKLTREH 594

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++ + +G   + D +R G+IEYLD  EE NA +A +  + T + TH+E+ P  ILG+ A 
Sbjct: 595  VEAIKNGQLEWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPAS 654

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN +PRNTY   M KQ++G    N   R+D+  +L+ YPQ PL+ +R ++ VG+
Sbjct: 655  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SY GY++EDAI++NK+S++RG  R    + Y A  ++Y     DR 
Sbjct: 715  EERPAGQNFVVAVLSYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKRYLGGQMDRF 774

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSI 855
             +PD T  G   +   ++ N     LD+DG+  P   ++  DV + + SP   LE +  +
Sbjct: 775  EKPDPTIKGY--LGDRYYRN-----LDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGL 827

Query: 856  MSPTGQTDSRYRSA-RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                 Q       A R + KG      +VD+V +    +G   +K  +R  R PELGDKF
Sbjct: 828  GGIALQERRETSVAVRPSEKG------IVDKVIITETGDGTKLVKVTVRDLRIPELGDKF 881

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR
Sbjct: 882  ASRHGQKGVIGLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGR 941

Query: 975  FHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
               G+AF GEP       E + + L + GF + G++++Y GITG  L+A IF+G IYYQ+
Sbjct: 942  RVDGTAFIGEPE------ERLRKELEELGFKHTGREVMYDGITGRRLEADIFVGVIYYQR 995

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ERL+  
Sbjct: 996  LHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEE 1055

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD  EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I P 
Sbjct: 1056 SDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPS 1115

Query: 1154 LKLAE 1158
            L+L +
Sbjct: 1116 LRLKD 1120


>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1189 (38%), Positives = 661/1189 (55%), Gaps = 97/1189 (8%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPSIF 79
            + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +I+
Sbjct: 29   WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIY 88

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTTME 135
             + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +   E
Sbjct: 89   KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTE 148

Query: 136  KND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
              D   V IG++PIMLRS  C LY   E +L  LGECP D GGYFII G+EKVL+ QE++
Sbjct: 149  AQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208

Query: 193  SKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--LLN 236
            S N V +   ++ N  A V              ST  V+  S+T  +      Y+   L 
Sbjct: 209  STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLP 268

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQEKALE 293
                +IPI++V +A+G  +D+++++ +  D  Y+    LL PS+EE     I  Q+ AL+
Sbjct: 269  YIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEA--FVIQNQQVALD 326

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++   L
Sbjct: 327  YI-GK-RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 384

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD            +
Sbjct: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKDVN 437

Query: 410  LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
            L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++    +
Sbjct: 438  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G E
Sbjct: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
            + E +S   +  P +  +  NG  +G HR P      ++KLRR   +   V V  + + +
Sbjct: 558  NFEEISPAVI--PQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLK 615

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVRSFDDFLREGLIEYLDV 643
             + I +D GR  RPL I DK    IK+  +  L       DG   + D + +G IEY+D 
Sbjct: 616  ELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDG--GWHDLVSKGFIEYIDT 673

Query: 644  NEENNALIALY----------EGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++             DA  DT TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 674  EEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA V++ 
Sbjct: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIA 793

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR    A  M 
Sbjct: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ANTMG 849

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL---ETRGSIMSPTGQTDSRYRSA 869
            + H S      LDDDGLA PG  +   DV I K +P+   E +G  +        RY   
Sbjct: 850  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL--------RYTRR 898

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
              +      ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    
Sbjct: 899  DHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
            QED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      
Sbjct: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV----- 1013

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
            TV++IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 1109
              +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+ 
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 1110 YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              N K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+   E
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKE 1182


>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
          Length = 1174

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1172 (37%), Positives = 659/1172 (56%), Gaps = 87/1172 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I    +           P   L+F+ + 
Sbjct: 32   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTAGEIENPPRYLLKFEQIY 91

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 92   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDKEEPIETQHQKTFIGKI 151

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 152  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 211

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 212  GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 271

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 272  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAR--- 326

Query: 305  GSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
              P   RE R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+
Sbjct: 327  --PGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 384

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRD 417
            D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I   
Sbjct: 385  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLDLAIKTK 437

Query: 418  SITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ P
Sbjct: 438  IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 497

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++ 
Sbjct: 498  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 557

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIAS 595
              + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +
Sbjct: 558  SAIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYT 615

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNAL 650
            D GR+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +
Sbjct: 616  DAGRICRPLLIVENGSLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVM 673

Query: 651  IALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
            IA+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 674  IAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 733

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+
Sbjct: 734  GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 793

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            ++MN S+++RGF R +  + Y     K      ++  +P R      R       N L  
Sbjct: 794  VIMNASAVERGFFRSVFFRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NALYD 846

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDG+ +PG  +  +DV I K   L      +  T +   RY     +    + ET +
Sbjct: 847  KLDDDGIISPGLRVSGDDVVIGKTITLPENEDELDGTTK---RYTKRDASTFLRNSETGI 903

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ P
Sbjct: 904  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTP 963

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G
Sbjct: 964  DIIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYG 1019

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1020 YQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1079

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC IA+GA+  + ERL   SDP+ + VC +CGL+   N +     C  
Sbjct: 1080 RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANMRNNTFECKG 1139

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1140 CKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1171


>gi|242398379|ref|YP_002993803.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
 gi|242264772|gb|ACS89454.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
          Length = 1118

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1142 (37%), Positives = 665/1142 (58%), Gaps = 51/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  +   +GLV+QHLDS+N F+  G+++++   + +   I P   ++F  VR+G+
Sbjct: 13   DLWHIMKAYWDEKGLVRQHLDSYNAFIEHGMQEVISEFEGVKPDI-PDFEVKFGRVRLGE 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  V+G   E       +V IG +P+M
Sbjct: 72   PEFQEAHGQRKPLYPIDARIRNLTYSAPVFLGMIPVVKGIEQEPV-----EVRIGELPVM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LY   + EL   GE P DPGGYFII G+E+V++  E L+ NR +++ D++ N 
Sbjct: 127  LKSKICRLYNLSDEELIAHGEDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEIDERQNR 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A   S     ++   ++  K G +Y+ +      +  + +M+A+G+ESD+E+V  VG 
Sbjct: 187  YIAKCFSYRHGYRALITVERRKDGLLYVSIPNVPGVLKFVHIMRALGLESDKEIVDAVGN 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            +P    +L  ++E+ +  D+ TQE+AL+Y+    KR+  G P   R  RA SI+ +  L 
Sbjct: 247  NPEVQQVLFDNLEDAS--DVQTQEEALDYIG---KRAMPGQPKEYRLRRAHSIIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   +   K +Y+ +M  ++ E  L     DDKD+  +KRL+L+G L+  LF   F 
Sbjct: 302  HMGVSPEDRIRKAYYLGMMALKVTELSLGLREEDDKDHYASKRLKLAGDLLKDLFRVAFG 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F   Q  VR+S+     T  +E  L+TG +        
Sbjct: 362  QLVKDMQYQLTKTYQRKGEKYTFQDIQRFVRNSVRPDVLTERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYMSTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNL+LM+ +TT   E  + +    LG+  +E    E    P+ + V  NG+++G ++  
Sbjct: 477  VKNLSLMSQITTAIPEEEVFAYLESLGIVHIE----ERRPEPDDWRVYLNGVLVGTYKDG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
                + ++  RR G+I E ++V   E  R +YI SD GRV RPL+I + G+ ++ + H++
Sbjct: 533  VELINKIKTDRREGRISEVINVAYYEDVREIYINSDEGRVRRPLIIVENGVPKLTKDHVE 592

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             +  G   + D +R G+IEYLD  EE NA +A +  + T + TH+EI P TILG+ A L+
Sbjct: 593  AIKKGTLKWSDLIRIGVIEYLDAEEEENAYVATWPWEVTEEHTHLEIMPATILGLPASLV 652

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HN +PRNTY   M KQ++G    N   R+D+  +L+ YPQ PL+ +R +E VG+++
Sbjct: 653  PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMEAVGFEQ 712

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
              AGQN  VAV+SYSGY++EDA++MNK+S++RG  R    + Y A  +KY    +D+   
Sbjct: 713  RPAGQNFIVAVLSYSGYNMEDAVIMNKASIERGLARSTFFRTYEAEEKKYMGGQTDKFEI 772

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMS 857
            PD T  G   +   ++ N     LD+DG+A P   ++  DV + + SP   LE + S+ +
Sbjct: 773  PDPTVRGF--LGEKYYRN-----LDEDGIAFPESKVQGKDVLVARTSPPRFLEEQTSLGA 825

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
              G    R  ++     G +G   ++D++ +    +G   +K  +R  R PE GDKF+SR
Sbjct: 826  --GILQGRRETSITMRPGEEG---IIDKIIITETGDGTKLVKVTVRDLRIPEFGDKFASR 880

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR   
Sbjct: 881  HGQKGVIGLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRID 940

Query: 978  GSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            G+AF GEP       E + + L + GF ++G++++Y GITG   +A IF+G IYYQ+L H
Sbjct: 941  GTAFIGEPE------EKLRKELEELGFKHSGREVMYDGITGRKFEADIFVGVIYYQRLHH 994

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GASML+ ERL+  SD 
Sbjct: 995  MVADKLHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGASMLLVERLLEESDK 1054

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             E  +C  CG L   + +     C  C   +NIS +++ YA KLL+ E+++M I P LKL
Sbjct: 1055 TEAWICESCGHLAVEDKRRDKIYCPVCGEEENISKVEMSYAFKLLLDEIKAMGIRPSLKL 1114

Query: 1157 AE 1158
             E
Sbjct: 1115 KE 1116


>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
          Length = 1175

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1171 (38%), Positives = 659/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I      +G    +T  +K+   IG
Sbjct: 93   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKS--FIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 151  KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 210

Query: 203  K------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K      K  I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKI 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 440  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 618  AGRICRPLLIVENGSLLLKKRHIDNLKE--RDYNNYGWQVLVSSGVVEYIDTLEEETTMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED++
Sbjct: 736  VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      ++  +P R      R       N +   
Sbjct: 796  ILNASAVERGFFRSVFFRSYKDAESKRVGDQEEQFEKPTRQTCQGMR-------NAIYDK 848

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +V
Sbjct: 849  LDDDGIIAPGLRVSGDDVVIGKTMTLPDNEDELEGTTK---RYTKRDASTFLRNSETGIV 905

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD
Sbjct: 906  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGISPD 965

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+
Sbjct: 966  IIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGY 1021

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1022 QLRGNEVMYNGHTGRKINAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1081

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  C
Sbjct: 1082 DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGC 1141

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1142 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/1210 (37%), Positives = 670/1210 (55%), Gaps = 91/1210 (7%)

Query: 1    MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
            +G  ++E    D   PD++++        D + ++  + + +GLV+Q LDSF+ F+   +
Sbjct: 34   VGGEEMEDEEADGDAPDEEEITQE-----DAWAVISAYFEEKGLVRQQLDSFDEFIQNTM 88

Query: 61   RKIVRAND----RIVSGIDPSIFLRFKD---------VRIGQPSMT-VDGVSEKLNPHMC 106
            ++IV  +     R  S  +P     F +         + + +P MT  DG +  L P   
Sbjct: 89   QEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSA 148

Query: 107  RLSDMTYAAPILVNIEY---VQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVLYGKDEA 161
            RL ++TY+AP+ V++ Y    +G   E+ T  ME   V IG++PIMLRS  C L+ + E 
Sbjct: 149  RLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEK 208

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------SVTSST 215
            +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      S+  + 
Sbjct: 209  DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQ 268

Query: 216  ETVKSKTVIQM--EKGKMYLLLNQFVKK--------IPIMVVMKAMGMESDQEVVQMVG- 264
                S   ++M    G       Q+++         IPI++V +A+G  +D+++++ +  
Sbjct: 269  NRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICY 328

Query: 265  --RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
               D +   LL PS+EE     I  Q+ AL+Y+ GK + +T G     R   A  IL+  
Sbjct: 329  DFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGATVGVTKEKRIKYAKEILQKE 384

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L +V V       K +Y   ++ R++   L + A DD+D+ GNKRL+L+G L+  LF  
Sbjct: 385  MLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 444

Query: 383  LFKTMI----SEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFK 438
            LF+ +     S VQK VD            +L   I   +IT GL+ +L+TGN+      
Sbjct: 445  LFRKLTRDVRSYVQKCVD-------NGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQA 497

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
              R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +TPEG+AC
Sbjct: 498  GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQAC 557

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLALM ++T      P++      G E+ E +S   +  P +  +  NG  +G HR
Sbjct: 558  GLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI--PQAAKIFVNGCWVGIHR 615

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
             P      +R+LRR   +   V V  + + + + + +D GR  RPL I +     IK+ H
Sbjct: 616  NPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRH 675

Query: 619  MKELLDGV---RSFDDFLREGLIEYLDVNEENNALIALYEGD----------ATPDT-TH 664
            ++ L         + D + +G IEY+D  EE   +I++   D          A  +T TH
Sbjct: 676  IRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTH 735

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L YPQ
Sbjct: 736  CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQ 795

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R +  + Y 
Sbjct: 796  KPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 855

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               +K      +   RP+R       M + H S      LDDDGLA PG  +   DV I 
Sbjct: 856  DEEKKMGTLVKEEFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIG 908

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K SP+    +     GQ  +RY     +      E+ +VD+V L ++ +G   +K  +R 
Sbjct: 909  KTSPIPQDDA----QGQA-TRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRS 963

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
             R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRMT+G++IE +
Sbjct: 964  VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECI 1023

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
             GK     G+    + F +      TV++IS+ L K G+   G + +Y+G TG  L A I
Sbjct: 1024 MGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 1078

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F+GP YYQ+LKHMV DK+H+RG GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+ 
Sbjct: 1079 FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAF 1138

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
             + ERL   SD + V VC  CGL+   N K  +  C  CKN  +I  + +PYACKLL QE
Sbjct: 1139 FLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1198

Query: 1145 LQSMNIVPRL 1154
            L +M I PR+
Sbjct: 1199 LMAMAIAPRM 1208


>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
          Length = 1175

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1176 (37%), Positives = 661/1176 (56%), Gaps = 95/1176 (8%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +   + E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTILKENEEPVETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I D G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVDGGNLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++M
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIM 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 798  NASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRLTCQGMR-------NALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG------- 878
            DDG+ +PG  +  +DV I K        +I  P  + D     A + Y   D        
Sbjct: 851  DDGIISPGIRVSGDDVVIGK--------TITLP--ENDDELEGATKRYTKRDASTFLRNS 900

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  
Sbjct: 901  ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE 960

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L
Sbjct: 961  GLTPDIIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLL 1016

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++++G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP 
Sbjct: 1017 QEYGYQLRGNEIMFNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 1076

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGRAR+GGLR GEMERDC IA+GA+  + ERL   SDP+ + +C  CG++   N +    
Sbjct: 1077 EGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNFCGIIAIANMRNNTF 1136

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C  CKN   IS +KLPYA KLL QEL +MNI PRL
Sbjct: 1137 ECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRL 1172


>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
          Length = 1175

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1169 (38%), Positives = 654/1169 (55%), Gaps = 77/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDDKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDEPVETQNQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I +    S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKYAFKSEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  SDATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I + G   +K+ H   +KE       +   + +G++EY+D  EE   +IA+  
Sbjct: 620  RICRPLLIVENGHLLLKKKHIDMLKEKEYNNYGWQVLVAQGVVEYIDTLEEETVMIAMTP 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  DDLRQDKEYAYCTNYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED+++MN 
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNA 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P RT     R       N +   LDDD
Sbjct: 800  SAVERGFFRSVFFRSYKDAESKGMGDQEEQFEKPSRTTCQGMR-------NAIYDKLDDD 852

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +   RY     +    + ET +VD+V 
Sbjct: 853  GIIAPGIRVSGDDVVIGKTITLPENDDELEGTTK---RYTKRDASTFLRNSETGIVDQVM 909

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIIN 969

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 970  PHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYHLRG 1025

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1026 NEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC IA+GA+  + ERL   SDP+ V VC  CG++   N +     C  CKN  
Sbjct: 1086 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHVCNFCGIIAIANLRNNTFECKGCKNKT 1145

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             IS ++LPYA KLL QEL SMNI PRL +
Sbjct: 1146 QISQIRLPYAAKLLFQELMSMNIAPRLMI 1174


>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
 gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
          Length = 1174

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1201 (37%), Positives = 676/1201 (56%), Gaps = 100/1201 (8%)

Query: 11   KDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------ 64
            +DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV      
Sbjct: 14   EDEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65

Query: 65   --RANDRIVSG---IDPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPIL 118
              +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ 
Sbjct: 66   DLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125

Query: 119  VNIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
            V+I      +G    +T  +K    IG+IPIMLRS  C+L G  + +L  L ECPLDPGG
Sbjct: 126  VDITKTIIKEGEDQLQTQHQKT--FIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGG 183

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG 229
            YFII G+EKVL+ QE+++ N V +   K       G   + + +S+    S  V  M +G
Sbjct: 184  YFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMMARG 243

Query: 230  -----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLP 275
                       ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ P
Sbjct: 244  GQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKP 303

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
            S++E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +    
Sbjct: 304  SLDEA--FVIQEQNVALNFIGSRGAKP--GVTKERRIKYAKEVLQKEVLPHVGVSDFCET 359

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
             K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ E+    
Sbjct: 360  KKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYA 419

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLAR 450
            QK +D       R   F+L   I    I+ GL+ +L+TGN+ DVK+    R G++QVL R
Sbjct: 420  QKFID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNR 472

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
            L+F  TL H+ RV+    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM ++
Sbjct: 473  LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYI 532

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +   +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKL
Sbjct: 533  SVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKL 590

Query: 571  RRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GV 626
            RR   I    VS+  + ++R + I +D GR+CRPL+I +K    +K  H+ +L +     
Sbjct: 591  RRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNN 650

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILG 674
             S+ D +  G++EY+D  EE   ++A+     TPD             +H EI P  ILG
Sbjct: 651  YSWQDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYSHCEIHPSMILG 705

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E
Sbjct: 706  VCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME 765

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
             + + +L AG N+ VA+ +Y+GY+ ED+++MN+S++DRGF R +  + Y     K     
Sbjct: 766  YLRFRELPAGINSIVAIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQ 825

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRG 853
             +   +P R      R  +          LDDDGL APG  +   DV I K   L ET  
Sbjct: 826  EEIFEKPTRETCSGMRHAIYDK-------LDDDGLIAPGVRVSGEDVIIGKTVTLPETDD 878

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
             + S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDK
Sbjct: 879  ELDS----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDK 934

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMTVG +IE L GK  VS  
Sbjct: 935  FASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSAN 992

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
            +   G A   P   A  V+ +S  L ++G+   G +++Y+G TG  + + IF+GP YYQ+
Sbjct: 993  KGEIGDA--TPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQR 1050

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +
Sbjct: 1051 LKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEA 1110

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SDP++V VC +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+I PR
Sbjct: 1111 SDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPR 1170

Query: 1154 L 1154
            +
Sbjct: 1171 M 1171


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/1191 (38%), Positives = 662/1191 (55%), Gaps = 98/1191 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND----RIVSGIDPS-------- 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV        R  S  +PS        
Sbjct: 44   DAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQPDFVET 103

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ ++F  + + +P MT  DG +  L P   RL ++TY++P+ V++  E ++  H  +  
Sbjct: 104  IYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEV 163

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  +   V IG++PIMLRS  C LY   E +L  LGECP D GGYFI+ G+EKVL+ QE
Sbjct: 164  TENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQE 223

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM-EKGKMYLLLNQFVK--- 240
            ++S N V +   ++ N  A      S++       S   ++M  +        Q+++   
Sbjct: 224  KMSSNHVYVFKKRQPNKYAYVAEVRSISEGQNKAPSGMFVRMLSRSNSKGAYGQYIRATL 283

Query: 241  -----KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKAL 292
                 +IPI+VV +A+G  +D++++  +     D +   LL PS+EE     I  Q+ AL
Sbjct: 284  PYIRTEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEA--FVIQNQQVAL 341

Query: 293  EYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
            +Y+ GK + ST G     R   A  IL+   L +V         K +Y   ++ R++  +
Sbjct: 342  DYI-GK-RGSTVGFTREKRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCV 399

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSRF 408
            L +   DD+D+  NKRL+L+G L+  LF  LF+ +     S VQK VD            
Sbjct: 400  LGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------GGKDV 452

Query: 409  DLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            +L   I   +IT GL+ +L+TGN+        R G++QVL RL+F  TL H+ R++    
Sbjct: 453  NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIG 512

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++        
Sbjct: 513  REGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWST 572

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ 588
            E+ E +S   +  P S  +  NG  +G HR P      +R+LRR   +   V V  N   
Sbjct: 573  ENFEEISPAVI--PQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRNINL 630

Query: 589  RCVYIASDGGRVCRPLVIADKGISRIKEH-----HMKELLDGVRSFDDFLREGLIEYLDV 643
            + + + +D GR  RPL I DK   RIK++      M+E  +    + D + +G IEY+D 
Sbjct: 631  KELRLYTDYGRCSRPLFIVDKKRLRIKKNDIIALQMRESSED-SGWHDLVAKGFIEYVDT 689

Query: 644  NEENNALIALYEGDAT-----PDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +IA+   D T     PD       TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 690  EEEETTMIAMTINDLTNSRVNPDEAYAETYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 749

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 750  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIT 809

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRG  R +  + Y    +K      +   RPDR     E   
Sbjct: 810  CYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYRDEEKKMGTLVKEDFGRPDR-----EHTM 864

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
             + H N   L  +DDG A PG  +  +DV I K +P+           Q +++ +SAR T
Sbjct: 865  GMRHGNYDKL--EDDGFAPPGTRVSGDDVIIGKTTPI----------SQDEAQGQSARYT 912

Query: 873  YKGPD-----GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
             K         ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G  
Sbjct: 913  RKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMT 972

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
              QED P+S  GI PD+I+NPH  PSRMT+G+++E + GK     G+    + F +    
Sbjct: 973  YTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGKEGDATPFTDV--- 1029

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
              TV+SIS TL   G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG 
Sbjct: 1030 --TVDSISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIHSRGR 1087

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC+ CGL
Sbjct: 1088 GPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGL 1147

Query: 1108 LGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            +   N K  +  C +C+N  +   + +PYACKLLIQEL SM I PR+   E
Sbjct: 1148 MAIANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKE 1198


>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
          Length = 1174

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +       +
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYKTTGW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   GK+++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGKEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
 gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1174

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
 gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
          Length = 1169

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1181 (36%), Positives = 675/1181 (57%), Gaps = 90/1181 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------------VSGID 75
            D + ++  + + +GLV+Q LDSF+ F+   +++I+  +  I              +    
Sbjct: 22   DVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPEAQHHPGQTQIQNTV 81

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTT 133
             +  ++F  + + +P+  +DGVS+++ P+  R+ ++TY+AP+ V+I    + G   +   
Sbjct: 82   STFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGPKGKIEE 141

Query: 134  MEKND-----VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
              +ND     V IG++PIMLRS  C+LY   + +L  +GECP D GGYF+I G+EKVL+ 
Sbjct: 142  QRRNDELLKRVFIGKVPIMLRSQYCMLYEATDRDLTTMGECPFDQGGYFVINGSEKVLIA 201

Query: 189  QEQLSKNRVII---DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK---- 241
            QE+++ N V +       K +  A + S  ET    T        MYL +     K    
Sbjct: 202  QEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPT------STMYLKMLHNTNKGPVG 255

Query: 242  -----------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYT 287
                       +P+++V +A+G  +D+++++ +     D +   L+ PS+EE  +  I +
Sbjct: 256  IKATIPYIKQDVPVIIVFRALGFVADKDILEHICYDFNDAQMMDLMRPSLEE--SFVIQS 313

Query: 288  QEKALEYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            QE AL+YL GK + ST G+    RE R   A  +L+   L +V V       K FY   +
Sbjct: 314  QEVALDYL-GK-RGSTIGT----REQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYI 367

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L +  +DD+D+  NKRL+L+G L+  LF  LFK +  +V+  +   + K   
Sbjct: 368  VHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDK--- 424

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
               F  S  +   +IT GL+ +L+TGN+   +    + G+ QVL RL+F  TL H+ R++
Sbjct: 425  DKEFIPSSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLN 484

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WG++CP +TPEG+ACGLVKNL++M++++      P++    
Sbjct: 485  TPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLSMMSYISVGSASQPILEFLE 544

Query: 525  CLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
                E+LE +S  +L +  +   IF NG+ +G H +P      +R LRR G +   VSV 
Sbjct: 545  EWTTENLEEIS--DLSSIFTATKIFVNGMWVGIHHQPDKLLGTLRLLRRCGDVSVEVSVV 602

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSF--DDFLREGLIEYL 641
             + +++ + + +D GR CRPL +      ++K+HH+ +L++    +   D L EG+IEY+
Sbjct: 603  RDIREKELRLYTDPGRCCRPLFVVQDNKLQVKKHHISKLINNSDEYKWQDLLNEGIIEYI 662

Query: 642  DVNEENNALIALYEGDATP--------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
            D  EE   LIA+   D  P          TH EI P  ILGV   +IP+P HNQSPRNTY
Sbjct: 663  DAEEEETVLIAMTPDDLVPLANEQIVHTYTHCEIHPSMILGVCCSIIPFPDHNQSPRNTY 722

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            Q AMGKQAMG    N   RMD++ ++L YPQ+PL+TTR++E + + +L AGQNA VA+  
Sbjct: 723  QAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNACVAIAC 782

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            YSGY+ ED++++N+S++DRG  R +  + Y    +K  +   ++  +PDR      R   
Sbjct: 783  YSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEQFEKPDRDTCAGMR--- 839

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
             H S      +D+DGL APG  +  +D+ I K +PL  +   + P  +  ++  S+    
Sbjct: 840  -HGS---YEKIDEDGLVAPGVRVAGDDIIIGKTTPLPPQEDDLGPKTRRHTKRDSSTALR 895

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
               +G   +VD+V L +   G    K  +R  R P++GDKFSSRHGQKG CG   +QED 
Sbjct: 896  SSENG---IVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDL 952

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            P++  GI PD+++NPH  PSRMT+G++IE L GK   S G     + F +      TVE+
Sbjct: 953  PWTVEGIVPDIVVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDV-----TVEA 1007

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            IS+ L K G+   G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L
Sbjct: 1008 ISQALHKVGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQIL 1067

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
            TRQP EGR+R+GGLR GEMERDC+I++G++  + ERL   SD + V VC +CGL+   N 
Sbjct: 1068 TRQPVEGRSRDGGLRFGEMERDCMISHGSAAFLRERLFDQSDHYRVHVCDICGLIAIANL 1127

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            K  +  C  CKN   IS +++PYA KLL QEL SM+I PR+
Sbjct: 1128 KKNSFECRRCKNKTQISQVRMPYAAKLLFQELMSMSIAPRM 1168


>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
            niloticus]
          Length = 1174

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1199 (37%), Positives = 674/1199 (56%), Gaps = 98/1199 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            +I      +G    +T  +K    IG+IPIMLRS  C+L G  + +L  L ECPLDPGGY
Sbjct: 127  DITKTIIKEGEDQLQTQHQK--TFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGY 184

Query: 177  FIIKGTEKVLLIQEQLSKNRVII--DTDKKGNINASVTSSTETVKSKT----VIQMEKG- 229
            FII G+EKVL+ QE+++ N V +    D K    A   S  E     T    V  M +G 
Sbjct: 185  FIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMMARGG 244

Query: 230  ----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                      ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS
Sbjct: 245  QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            ++E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     
Sbjct: 305  LDEA--FVIQEQNVALNFIGSRGAKP--GVTKERRIKYAKEVLQKEMLPHVGVSDFCETK 360

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ E+    Q
Sbjct: 361  KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ 420

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARL 451
            K +D       R   F+L   I    I+ GL+ +L+TGN+ DVK+    R G++QVL RL
Sbjct: 421  KFID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRL 473

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            +F  TL H+ RV+    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++
Sbjct: 474  TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS 533

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLR
Sbjct: 534  VGSQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLR 591

Query: 572  RAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVR 627
            R   I    VS+  + ++R + I +D GR+CRPL+I +K    +K  H+ +L +      
Sbjct: 592  RQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNY 651

Query: 628  SFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGV 675
            S+ D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV
Sbjct: 652  SWQDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGV 706

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E 
Sbjct: 707  CASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEY 766

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      
Sbjct: 767  LRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQE 826

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            +   +P R     E  Q + H+  +   LDDDGL APG  +   DV I K   L      
Sbjct: 827  EIFEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDE 879

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
            +     T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+
Sbjct: 880  LD---STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFA 936

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMTVG +IE L GK  VS  + 
Sbjct: 937  SRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSANKG 994

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
              G A   P   A  V+ +S  L ++G+   G +++Y+G TG  L + IF+GP YYQ+LK
Sbjct: 995  EIGDA--TPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLK 1052

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SD
Sbjct: 1053 HMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASD 1112

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            P++V VC +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1113 PYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
            cuniculus]
          Length = 1174

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
 gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
 gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
            troglodytes]
 gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
            jacchus]
 gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
            [Pongo abelii]
 gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
            leucogenys]
 gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
            porcellus]
 gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Cricetulus griseus]
 gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Otolemur garnettii]
 gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Papio anubis]
 gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
 gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
            largest subunit [human, HeLa cells, Peptide, 1174 aa]
 gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
            norvegicus]
 gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
 gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
 gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
 gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
          Length = 1174

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
          Length = 1150

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1169 (37%), Positives = 662/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 8    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYLLKFEQIY 67

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 68   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQKTFIGKI 127

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 128  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 187

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 188  GKFAYKCEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 247

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 248  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 303

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 304  GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 364  GNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 416

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+  + R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 417  DGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 476

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 477  HNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 536

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 537  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 594

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ ++ +L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 595  RICRPLLIVENGQLLLKKRNIDQLKE--RDYNNYGWQMLVASGVVEYIDTLEEETVMIAM 652

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 653  SPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 712

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 713  ITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 772

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N ++++RGF R +  + Y     K      ++  +P+R      R       N +   LD
Sbjct: 773  NATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRNNCQGMR-------NAIYDKLD 825

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 826  DDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTRRHTK-RDASTFLR--NSETGIVDQ 882

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 883  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGVQYRQEDMPFTCEGLTPDII 942

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS+ L  +G+  
Sbjct: 943  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISQLLQDYGYHL 998

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 999  RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1058

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1059 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1118

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1119 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1147


>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Equus caballus]
          Length = 1174

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLQLAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1167

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 8    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 59

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 60   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 120  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 179

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 180  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 239

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 240  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 299

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 300  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 355

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 356  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 415

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 416  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 468

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 469  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 528

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 529  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 586

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 587  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 646

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 647  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 701

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 702  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 761

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 762  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 821

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 822  FEKPTR-----ETCQGMRHA--IYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 875  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 930

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 931  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 988

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 989  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1046

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1047 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1106

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1107 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1164


>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
          Length = 1167

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 8    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 59

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 60   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 120  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 179

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 180  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 239

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 240  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 299

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 300  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 355

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 356  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 415

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 416  ID-------RGKDFNLELAINTKIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 468

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 469  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 528

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 529  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 586

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 587  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 646

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 647  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 701

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 702  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 761

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 762  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 821

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 822  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 875  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 930

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 931  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 988

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 989  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1046

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1047 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1106

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1107 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1164


>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
          Length = 1150

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1169 (37%), Positives = 662/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         +G     P   L+F+ + 
Sbjct: 8    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVETPPRYLLKFEQIY 67

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-DVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I        E   + +N    IG+I
Sbjct: 68   LSKPTHWEKDGAPSAMMPNEARLRNLTYSAPLYVDITKTIIREGEDQVVTQNPKTFIGKI 127

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K 
Sbjct: 128  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKD 187

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 188  GKFAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 247

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 248  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 303

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 304  GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 364  GNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 416

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+  M R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 417  DGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 476

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 477  HNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 536

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 537  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 594

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ ++ +L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 595  RICRPLLIVENGQLLLKKRNIDQLKE--RDYNNYGWQMLVASGVVEYIDTLEEETVMIAM 652

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 653  SPDDLNQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 712

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 713  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 772

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N ++++RGF R +  + Y     K      ++  +P+R+     R       N L   LD
Sbjct: 773  NATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRSNCQGMR-------NALYDKLD 825

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 826  DDGIIAPGLRVSGDDVVIGKTITLPETDDELEGTTRRHTK-RDASTFLR--NSETGIVDQ 882

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 883  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 942

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 943  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 998

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 999  RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1058

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1059 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1118

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SM+I PRL
Sbjct: 1119 KTQISQVRLPYAAKLLFQELMSMSIAPRL 1147


>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
 gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
          Length = 1126

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1146 (38%), Positives = 658/1146 (57%), Gaps = 47/1146 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            +V ++++++  F K+RGLV+QHLDSFN F+   +++I+     I++ I P + ++   +R
Sbjct: 4    TVNERWEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEIITEI-PGLKIKLGKIR 62

Query: 87   IGQPSM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
              +P +  T  G  ++L P   RL ++TYA P+ + +  ++ +       E  +V IG +
Sbjct: 63   YDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYLTMIPIENN----IEGEPIEVYIGDL 118

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIML+S           EL ++GE P DPGGYFI+ GTEKV++ QE L+ NRV++D  K 
Sbjct: 119  PIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVNGTEKVIVAQEDLATNRVLVDYGKS 178

Query: 205  G-NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            G NI   A +TS+    + + VI+ ++   + +       KIP +++M+A+G  +D+++V
Sbjct: 179  GSNITHVAKITSAAAGYRVQVVIERLKDSSIQVSFATVPGKIPFVIMMRALGFTTDKDIV 238

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
              V  DP     LLPS+E+ ++  I T E AL+++  ++     G    +R  RA  I+ 
Sbjct: 239  YAVSLDPEIQNELLPSLEQASS--ITTVEDALDFIGNRI---AIGQKRENRIQRAEQIID 293

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
              FL ++     + + K +Y+A  + +++E  L +   DDKD+  NKR+ L+G L + LF
Sbjct: 294  KYFLPHIGTSPEDRKKKGYYLAAAVNKLLELYLGRRQPDDKDHYANKRVRLAGDLFTSLF 353

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
               FK  + ++   ++       R  R  L+  +  D IT  +   L+TGN+        
Sbjct: 354  RVAFKAFVKDLVYQLE---KAKVRGRRLSLTALVRADIITERVRHALATGNW-----VGG 405

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GL
Sbjct: 406  RTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGL 465

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGV----EDLELLSGEELHNP--NSFLVIFNGLIL 554
            VKNLAL+  V+    E  +  + Y  GV    E ++ LS EE  N   N   V  NG +L
Sbjct: 466  VKNLALLAQVSVGINESSIEKVIYEQGVISQEELIDRLSAEEDINKYLNWSKVYLNGRLL 525

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            G +   K  A+ +R+LRR+GKI + V+V   V E    V+I  DGGRV RPL+I   G  
Sbjct: 526  GYYPDGKELAEKIRELRRSGKISDEVNVAHIVTEYINEVHINCDGGRVRRPLIIVKDGKP 585

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             + E  +++L  G  +FDD +++G IE+LD  EE NA IAL   D T D TH+EI P  I
Sbjct: 586  LVSEDDIEKLRKGEITFDDLVKQGKIEFLDAEEEENAYIALNPQDLTKDHTHLEIWPPAI 645

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQ+PL+ T+ 
Sbjct: 646  LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVGTKI 705

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            ++++GY+   AG NA +AVMSY+GY++EDAI+MNKSS++RG  R    + Y+    KY  
Sbjct: 706  LDIIGYNDRPAGNNAILAVMSYTGYNMEDAIIMNKSSVERGMYRSTFFRLYSTEELKYPG 765

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
               D+I++P+   PG +     +  N    +L+D+G+ +P   +K  DV I K SP    
Sbjct: 766  GQEDKIMKPE---PGTKG----YKGNEYYRLLEDNGIVSPEVEVKGGDVLIGKVSPPRFL 818

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
                  + +   R  S    +    GE  +VD V +     G+  +K  +R  R PE+GD
Sbjct: 819  QEFKELSPEQSKRDTSIVTRH----GEMGIVDLVLVTESSEGNKLVKVRVRDLRIPEIGD 874

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KF++RHGQKGV G ++ Q D P++ +G+ PD+I+NPH  PSRMT+G+++E L GK     
Sbjct: 875  KFATRHGQKGVIGMLIDQADMPYTVKGVVPDIILNPHALPSRMTIGQIMEALAGKYVALT 934

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+    + F E    +  +E I + + + G   +G +++Y G TG  L+  I  G +YYQ
Sbjct: 935  GKPVDATPFIE----SPPLEEIRKGIRESGLLPDGTEVVYDGRTGQKLKGRILFGIVYYQ 990

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            KL HMV DKMHAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +MLI +RL+ 
Sbjct: 991  KLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLD 1050

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            +SD   + VC  CG +G+Y+      +C       N+  + + YA KLL+QEL SM I P
Sbjct: 1051 NSDKATIYVCDKCGYIGWYDRARNKYVCPIHGENANLYPVTVSYAFKLLLQELMSMVISP 1110

Query: 1153 RLKLAE 1158
            RL L +
Sbjct: 1111 RLVLGD 1116


>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
            rotundus]
          Length = 1144

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1167 (37%), Positives = 666/1167 (57%), Gaps = 78/1167 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGI---DPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 3    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIY 62

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E+   +     IG+I
Sbjct: 63   LSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKI 122

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K 
Sbjct: 123  PIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD 182

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                  G   + + +S+    +  V  + +G           ++   L    +++PI++V
Sbjct: 183  SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIV 242

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL ++  +  +   
Sbjct: 243  FRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 298

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  +L+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 299  GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 358

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+L   I    I+
Sbjct: 359  GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFNLELAIKTRIIS 411

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K++ PR L
Sbjct: 412  DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 471

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE +S   +
Sbjct: 472  HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 531

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G H+ P+   + +RKLRR   I    VS+  + ++R + I +D G
Sbjct: 532  ADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 589

Query: 599  RVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I +K    +K+ H+ +L +      S+ D +  G++EY+D  EE   ++A+  
Sbjct: 590  RICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 649

Query: 656  GDATPDT-------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
             D            TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 650  DDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITN 709

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED+++MN+S
Sbjct: 710  FHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRS 769

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            ++DRGF R +  + Y     K      +   +P R     E  Q + H+  +   LDDDG
Sbjct: 770  AVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA--IYDKLDDDG 822

Query: 829  LAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            L APG  +  +DV I K   L E    + S    T+ RY     +      ET +VD+V 
Sbjct: 823  LIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVM 878

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I+N
Sbjct: 879  VTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIIN 938

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L  +G+   G
Sbjct: 939  PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRG 994

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGR+R+GGL
Sbjct: 995  NEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGL 1054

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC IA+GA+  + ERL  +SDP++V VC +CG++   N +     C  C+N  
Sbjct: 1055 RFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKT 1114

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS +++PYACKLL QEL SM+I PR+
Sbjct: 1115 QISLVRMPYACKLLFQELMSMSIAPRM 1141


>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Pongo abelii]
 gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1167

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 8    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 59

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 60   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 120  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 179

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 180  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 239

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 240  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 299

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 300  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 355

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 356  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 415

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 416  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 468

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 469  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 528

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 529  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 586

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 587  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 646

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 647  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 701

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 702  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 761

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 762  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 821

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 822  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 875  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 930

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 931  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 988

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 989  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1046

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1047 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1106

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1107 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1164


>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
          Length = 1175

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1174 (37%), Positives = 660/1174 (56%), Gaps = 91/1174 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I    +           P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSAEIETPPHYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    S  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  SKYAYKAEIRSCLEHSSRPTSSLWVNMMARGGQAIKKAAIGQRIIAILPYIRQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLDLAIKTKMIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L D  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGNLLLKKSHVDMLKD--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPEDLRQDKENAYCNTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R     + M+  H+  L     D
Sbjct: 798  NASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQT--CQGMRNAHYDKL-----D 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ-----TDSRYRSARQTYKGPDGET 880
            DDG+ +PG  +  +DV I K        +IM P  +     T  RY     +    + ET
Sbjct: 851  DDGIISPGIRVSGDDVVIGK--------TIMLPENEDELEGTTKRYTKRDASTFLRNSET 902

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             VVD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+
Sbjct: 903  GVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGL 962

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 1000
             PD+I+NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L +
Sbjct: 963  TPDIIINPHAIPSRMTIGHLIECIQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQE 1018

Query: 1001 HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            +G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EG
Sbjct: 1019 YGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEG 1078

Query: 1061 RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1120
            RAR+GGLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N K     C
Sbjct: 1079 RARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLKNNTFEC 1138

Query: 1121 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              CKN   IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1139 KGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1206 (37%), Positives = 672/1206 (55%), Gaps = 98/1206 (8%)

Query: 9    SPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---- 64
            + ++E LPD  ++        D + ++  F + +GLV+Q LDSFN F+N+ +++IV    
Sbjct: 5    AAEEEDLPDDAEITQE-----DAWAVISAFFEAKGLVRQQLDSFNEFINSNMQEIVDEYG 59

Query: 65   --------RANDRIVSGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAA 115
                    + N  +    +    + F  + + +P+MT  DG +  L P   RL ++TYAA
Sbjct: 60   TLLVKPESQHNPGMAELEEKEYKVEFGQIYLSKPTMTEADGETVVLFPKEARLRNLTYAA 119

Query: 116  PILVNIE---YVQGSHTEKTTMEKN--DVVIGRIPIMLRSCRCVLYGKDEAELARLGECP 170
            P+ ++I+     +  + E  T E++   + IG +PIMLRS  C L+ +   +L +LGECP
Sbjct: 120  PLYIDIKKTVITRVPNGEAETEEESYPKIFIGEVPIMLRSSYCSLHERTNQQLTQLGECP 179

Query: 171  LDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTV 223
             D GGYF++ G+EKVL+ QE+++ N+V +           +    + V +ST    S ++
Sbjct: 180  YDQGGYFVVNGSEKVLIAQERMANNQVYVFRKSQPSKYAYQAECRSVVENSTRNTSSMSI 239

Query: 224  IQMEK--GK----MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL---LL 274
              + +  GK    +   L      IPI+++ +A+G+ +D++++Q V  D   +A+   L 
Sbjct: 240  RMLARSGGKGGQAIRATLPYIRADIPILIIFRALGLTADKDILQHVVYDFNDTAMMEALR 299

Query: 275  PSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
            PSIEE     I TQE AL+++ GK + S  G     R   A  IL+   L +V +   + 
Sbjct: 300  PSIEEA--FPIQTQEVALDFI-GK-RGSNPGVTREKRIHYARDILQREMLPHVAIGEFSE 355

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SE 390
              K ++   M+ R++   L +   DD+D+  NKRL+L G L++ LF  LF+ +     S 
Sbjct: 356  TKKAYFFGYMVHRLLLVALGRRDQDDRDHYCNKRLDLGGPLLANLFRQLFRKLTKDVRSH 415

Query: 391  VQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLAR 450
            VQK VD       R    +L   + +D+IT GL  +++TGN+ ++     R G++QVL R
Sbjct: 416  VQKAVD-------RGKEINLMAAVNKDTITRGLRYSIATGNWGMQGTAGMRAGVSQVLNR 468

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
            L++  TL H+ R+S    +  K++ PR L  SQWG++CP +TPEG+ACGLVKNLALM++V
Sbjct: 469  LTYASTLSHLRRISSPIGREGKLAKPRQLHNSQWGVICPAETPEGQACGLVKNLALMSYV 528

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL----VIFNGLILGKHRRPKCFADV 566
            +      P+         E+LE +      NP+  L    V  NG+ +G HR+P    + 
Sbjct: 529  SVGCPSAPIGEFLEEWSTENLEEI------NPSVILEATKVFVNGVWVGIHRQPAVLVNT 582

Query: 567  MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR--IKEHHMKELLD 624
            +RK+RR   I   V +  + + + + + +D GR CRPL I D    R  I +  +++L +
Sbjct: 583  LRKMRRQVDISTEVGIVHDIRLQELRLYTDYGRCCRPLFIVDPDRKRLTITKDDIRQLQE 642

Query: 625  GVRS---FDDFLREGLIEYLDVNEENNALIAL----YEGDATP-------DTTHIEIEPF 670
               +   +++ + +G IEY+D  EE   +IA+     E   TP         TH EI P 
Sbjct: 643  REVTHFGWNELVHKGCIEYIDTEEEETTMIAMEIKDLENARTPGRVAYSETYTHCEIHPS 702

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+  Y+L YPQ+PL+TT
Sbjct: 703  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQTRMDTQAYVLYYPQKPLVTT 762

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            R +E + + +L AGQN  VA+  YSGY+ ED+++MN+SS+DRGF R +  + Y A  +K 
Sbjct: 763  RAMEHLHFRELPAGQNTIVAIACYSGYNQEDSLMMNQSSIDRGFFRSMFFRTYRAEEKKQ 822

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
             +   + I  PDR+   A R             LDDDG+A PG  +   DV I K SPL 
Sbjct: 823  GSLVQEVIEVPDRSVTVAMRHGTYDK-------LDDDGIAPPGTRVSGEDVIIGKTSPLA 875

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                 ++       R+     +    + E+ ++D+V + ++  G   +K  +R  R P++
Sbjct: 876  DEQPGVA------QRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQRFVKIRVRSIRIPQV 929

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKG  G    QED P++  GI PDLI+NPH  PSRMT+G ++E L  K   
Sbjct: 930  GDKFASRHGQKGTIGMTYTQEDMPWTSEGIVPDLIINPHAIPSRMTIGHLVEALMSKVAA 989

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G+    + F E      TV++IS  L   G+   G + +Y+G TG  LQA IF+ P Y
Sbjct: 990  LVGKEGDATPFAEV-----TVDNISAALHTCGYQSRGWETMYNGHTGRRLQAQIFLNPTY 1044

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+LKHMV DK+H+RG GP  +LTRQP EGRAR+GGLR GEMERDC+I++G++  + ERL
Sbjct: 1045 YQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGSAAFLKERL 1104

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
               SD + V VC  CGL    N K     C  CKN   I  + +PYACKLL QEL +M I
Sbjct: 1105 FDQSDAYRVHVCDRCGLFAVANLKKNQFHCPACKNTTGIVQVHMPYACKLLFQELMAMAI 1164

Query: 1151 VPRLKL 1156
             PR++ 
Sbjct: 1165 APRMQF 1170


>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
 gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
          Length = 1193

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1171 (37%), Positives = 671/1171 (57%), Gaps = 75/1171 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR---------ANDRIVSGID-PSIF-L 80
            + ++  +   +GLV+Q LDSF+ FV   +++IV           N  + + ++ P+ F L
Sbjct: 34   WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSL 93

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            +F  + + +P+    DG    + P+  RL ++TYA+P+ V+I  V       T    + V
Sbjct: 94   KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKV 153

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             +G++P+MLRS  C+L    + +L  L ECPLDPGGYF+I G+EKVL+ QE+++ N V +
Sbjct: 154  FVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYV 213

Query: 200  DTDKKGNI------NASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKI 242
             + K G         + + +S+    +  V  + +G           ++  +L    ++I
Sbjct: 214  FSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEI 273

Query: 243  PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
            PIM+V +A+G  SD++++  +     DP    ++ PS++E     I  Q  AL ++  + 
Sbjct: 274  PIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR- 330

Query: 300  KRSTFGSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
                 G+ P   RE R   A  IL+   L +V V  +    K F++  M+ R++ A L +
Sbjct: 331  -----GAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 385

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415
              +DD+D++GNKRL+L+G L++ LF  LF+ ++ E++ T    ++K   +  F L   + 
Sbjct: 386  RELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK---NDDFALDVCVK 442

Query: 416  RDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
              +IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ R +    +  K++
Sbjct: 443  TSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLA 502

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  +QWGM+CP +TPEG+A GLVKNLALM +++      P++       +E+LE +
Sbjct: 503  KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEV 562

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYI 593
            S   + +     V  NG  +G HR P      ++KLRR   I    VS+  + + R + I
Sbjct: 563  SPSAIADATKIFV--NGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRI 620

Query: 594  ASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-----SFDDFLREGLIEYLDVNEENN 648
             +D GRVCRPL+I +     +K+ H+ +L +        ++ D +  G++E +D  EE  
Sbjct: 621  YTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEET 680

Query: 649  ALIALYEGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            ++IA+   D       DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 681  SMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 740

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++SYSGY+ ED++
Sbjct: 741  VYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSV 800

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN S++DRG  R +  + Y        N+  + I +P R     E+   + HS  L   
Sbjct: 801  IMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTR-----EKCSGMRHS--LYDK 853

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LD+DG+ +PG  +  +DV I K   L      +  +G+   + R A    +    ET +V
Sbjct: 854  LDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPK-RDASTFLRS--SETGIV 910

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  + +G+  +K  +R  R P++GDKF+SRHGQKG  G + +QED PF+  G+ PD
Sbjct: 911  DQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPD 970

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK   + G     + F +       V+ IS  L ++G+
Sbjct: 971  IIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV----NVQKISGLLCEYGY 1026

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  L   IF GP YYQ+LKHMV DK+H+R  GP  M+ RQP EGRAR
Sbjct: 1027 HLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRAR 1086

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC I++GA+  + ERL   SDP+ V VC  CGL+   N +  +  C  C
Sbjct: 1087 DGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKAC 1146

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +N   +S++++PYACKLL QEL SM+I PRL
Sbjct: 1147 RNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1177


>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
          Length = 1150

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1174 (37%), Positives = 657/1174 (55%), Gaps = 91/1174 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 8    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIETPPRYLLKFEQIY 67

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 68   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVRDGEEPIETQHQKTFIGKI 127

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 128  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 187

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I +    S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 188  GKYAYKTEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIRQEIPIMIV 247

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 248  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 303

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 304  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK +  EV    QK +D       R   F+L   I    IT
Sbjct: 364  GNKRLDLAGPLLAFLFRGLFKNLTKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 416

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 417  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 476

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 477  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAI 536

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 537  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 594

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R ++++     + +G++EY+D  EE   +IA+
Sbjct: 595  RICRPLLIVENGSLLLKKRHVDMLKE--REYNNYGWQVLVAQGVVEYIDTLEEETVMIAM 652

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 653  STDDLKQDKEFAYCNTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 712

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++M
Sbjct: 713  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIM 772

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 773  NASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 825

Query: 826  DDGLAAPGEIIKPNDVYINKESPL-----ETRGSIMSPTGQTDSRYRSARQTYKGPDGET 880
            DDG+ +PG  +  +DV I K   L     E  GS    T +  S +          + ET
Sbjct: 826  DDGIISPGIRVSGDDVVIGKTITLPDNEDELEGSTKRFTKRDASTFLR--------NSET 877

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+
Sbjct: 878  GIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGL 937

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 1000
             PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L +
Sbjct: 938  TPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQE 993

Query: 1001 HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            +G+   G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EG
Sbjct: 994  YGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEG 1053

Query: 1061 RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1120
            RAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C
Sbjct: 1054 RARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFEC 1113

Query: 1121 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              CKN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1114 KGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1147


>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
            adamanteus]
          Length = 1167

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 8    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 59

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  +G     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 60   LQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     ++   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 120  DITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 179

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 180  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 239

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 240  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 299

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 300  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 355

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 356  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 415

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 416  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 468

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 469  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 528

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 529  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 586

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 587  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 646

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 647  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCA 701

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 702  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 761

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 762  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEV 821

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 822  FEKPSR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 875  S----TNRRYTKRDCSTFLRTSETGIVDQVMITLNQEGYKFCKIRVRSVRIPQIGDKFAS 930

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 931  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 988

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 989  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1046

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1047 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1106

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1107 YQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1164


>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
          Length = 1167

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 8    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 59

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 60   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHRERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 120  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 179

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 180  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 239

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 240  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 299

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 300  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 355

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 356  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 415

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 416  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 468

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 469  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 528

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 529  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 586

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 587  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 646

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 647  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 701

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 702  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 761

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 762  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 821

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 822  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 875  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 930

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 931  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 988

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 989  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1046

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1047 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1106

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1107 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1164


>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
 gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Canis lupus familiaris]
 gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Ailuropoda melanoleuca]
 gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Felis catus]
 gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
 gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
 gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
          Length = 1174

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1197 (37%), Positives = 675/1197 (56%), Gaps = 94/1197 (7%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L      + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
             T +   RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SR
Sbjct: 882  GTNR---RYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 938

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   
Sbjct: 939  HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEI 996

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHM
Sbjct: 997  GDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHM 1054

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP+
Sbjct: 1055 VDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPY 1114

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1115 QVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
            carolinensis]
          Length = 1174

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1198 (37%), Positives = 678/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  +G     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     ++   +     IG+IPIMLRS  C+L G  + +L +L ECPLDPGGYFI
Sbjct: 127  DITKTVVKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCQLNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGIAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIKVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
            domestica]
 gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
            harrisii]
          Length = 1174

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  +G     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
          Length = 1226

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 67   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 118

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 119  LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 178

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 179  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 238

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 239  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 298

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 299  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 358

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 359  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 414

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 415  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 474

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 475  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 527

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 528  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 587

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 588  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 645

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 646  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 705

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 706  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 760

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 761  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 820

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 821  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 880

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 881  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 933

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 934  S----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 989

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 990  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 1047

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 1048 IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1105

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1106 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1165

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1166 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1223


>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
          Length = 1150

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1169 (37%), Positives = 661/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 8    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 67

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 68   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 127

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 128  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 187

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 188  GKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 247

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 248  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 303

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 304  GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 364  GNKRLDLAGPLLAFLFRGLFKNLMKEVRIYAQKFID-------RGKDFNLELAIKTKIIT 416

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 417  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 476

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 477  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 536

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 537  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 594

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 595  RICRPLLIVEGGNLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 652

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 653  SPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 712

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++M
Sbjct: 713  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIM 772

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P RT     R       N L   LD
Sbjct: 773  NASAVERGFFRSVFFRAYKDAESKRIGDQEEQFEKPTRTTCQGMR-------NALYDKLD 825

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ +PG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 826  DDGIISPGIRVSGDDVVIGKTITLPDTEDELEGTTKRFTK-RDASTFLR--NSETGIVDQ 882

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 883  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 942

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 943  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 998

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 999  RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1058

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1059 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1118

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1119 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1147


>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
          Length = 1173

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1172 (37%), Positives = 662/1172 (56%), Gaps = 87/1172 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         +G     P   L+F+ + 
Sbjct: 31   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTTGEIETPPRYLLKFEQIY 90

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 91   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVRDGEDPIEAQHQKTFIGKI 150

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 151  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 210

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 211  GKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 270

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 271  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAR--- 325

Query: 305  GSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
              P   RE R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+
Sbjct: 326  --PGVTREKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 383

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRD 417
            D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I   
Sbjct: 384  DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLELAIKTK 436

Query: 418  SITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ P
Sbjct: 437  IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 496

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++ 
Sbjct: 497  RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 556

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIAS 595
              + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +
Sbjct: 557  SAIADATKIFV--NGCWVGIHRDPEQLMATLRKLRREMDIIVSEVSMIRDIRDREIRIYT 614

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNAL 650
            D GR+CRPL+I + G   +K+ H+  L D  R ++++     +  GL+EY+D  EE   +
Sbjct: 615  DAGRICRPLLIVENGSLLLKKRHIDMLKD--REYNNYGWQVLVSSGLVEYIDTLEEETVM 672

Query: 651  IALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
            IA+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 673  IAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 732

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+
Sbjct: 733  GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 792

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            +++N S+++RGF R +  + Y     K      ++  +P+R      R       N L  
Sbjct: 793  VILNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMR-------NALYD 845

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDG+ +PG  +  +DV I K   L      +  T +  ++ R A    +  + ET +
Sbjct: 846  KLDDDGIISPGIRVSGDDVVIGKTMTLHETDDELEGTTKRFTK-RDASTFLR--NSETGI 902

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ P
Sbjct: 903  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTP 962

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G
Sbjct: 963  DIIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYG 1018

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1019 YQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1078

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  
Sbjct: 1079 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG 1138

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN   IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1139 CKNKTQISQIRLPYAAKLLFQELMAMNIAPRL 1170


>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
 gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6) [Pyrococcus
            abyssi GE5]
 gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi GE5]
          Length = 1117

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1142 (38%), Positives = 658/1142 (57%), Gaps = 52/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + + +GLV+QHLDS+N F++ G++++V     I   I P   ++F  +R+G+
Sbjct: 13   DLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFGKIRVGE 71

Query: 90   PSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  ++G   E       +V IG +PIM
Sbjct: 72   PEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPV-----EVRIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD-KKGN 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E ++ NR +++ D ++  
Sbjct: 127  LKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEK 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A V S     ++   ++ +K G +Y+ +    K +  + VM+A+G+E D+++V  VG 
Sbjct: 187  YIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGN 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DP    +L  ++E+ +  DI TQ++ALEY+ GK+     G     R  RA  ++ +  L 
Sbjct: 247  DPEVQQILFDNLEDAS--DITTQQEALEYI-GKL--VAPGQAREYRLKRAEYVIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   +   K +Y+ +M  +++E  L K   DDKD+  NKRL L+G L+  LF   F 
Sbjct: 302  HIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFS 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F      +R+SI     T  +E  L+TG +        
Sbjct: 362  QLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+   ++ +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  +      LG+  +E+       +P  + V  NG+I+G     
Sbjct: 477  VKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRP----SPELWRVYLNGVIIGTIEDG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            K   + ++K RR+GKI + ++V   E  R VY+ SD GRV RPL+I + G  ++ + H++
Sbjct: 533  KALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQ 592

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             + +G   + D +R G+IEYLD  EE NA +A++  + T + TH+E+ P  ILG+ A LI
Sbjct: 593  AIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLI 652

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HN +PRNTY   M KQ++G    N   R+D+  +LL YPQ PL+ +R ++ VGY+ 
Sbjct: 653  PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED 712

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
              AGQN  VAV++Y GY++EDAI++NK+S++RG  R    + Y A  +KY    +D+   
Sbjct: 713  RPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEI 772

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMS 857
            P  T  G    +   H       LD+DGL  P   ++  DV I + SP   LE RG    
Sbjct: 773  PSPTVRGYRGEKYYRH-------LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERG---- 821

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
              G    + R        P  E  VVD+V +    +G   +K  +R  R PE+GDKF+SR
Sbjct: 822  -LGAVSLQERRETSVAVRP-SERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASR 879

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG+++E +GGK     GR   
Sbjct: 880  HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939

Query: 978  GSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            G+AF GEP       E + + L + GF + G++++Y GITG   +A IF+G IYYQ+L H
Sbjct: 940  GTAFIGEPE------EKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHH 993

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ERL+  SD 
Sbjct: 994  MVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDK 1053

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I P+L L
Sbjct: 1054 TEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113

Query: 1157 AE 1158
             E
Sbjct: 1114 TE 1115


>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
          Length = 1167

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1197 (37%), Positives = 675/1197 (56%), Gaps = 94/1197 (7%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 8    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 59

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 60   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 119

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 120  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 179

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 180  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 239

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 240  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 299

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 300  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 355

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 356  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 415

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 416  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 468

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 469  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 528

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 529  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 586

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 587  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 646

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 647  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 701

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 702  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 761

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 762  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 821

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L      + 
Sbjct: 822  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
             T +   RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SR
Sbjct: 875  GTNR---RYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 931

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   
Sbjct: 932  HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEI 989

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHM
Sbjct: 990  GDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHM 1047

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP+
Sbjct: 1048 VDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPY 1107

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1108 QVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1164


>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
          Length = 1175

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1197 (37%), Positives = 675/1197 (56%), Gaps = 94/1197 (7%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 16   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 67

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 68   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 127

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 128  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 187

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 188  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 247

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 248  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 307

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 308  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 363

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 364  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 423

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 424  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 476

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 477  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 536

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 537  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 594

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 595  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 654

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 655  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 709

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 710  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 769

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 770  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 829

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L      + 
Sbjct: 830  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 882

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
             T +   RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SR
Sbjct: 883  GTNR---RYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 939

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   
Sbjct: 940  HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEI 997

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHM
Sbjct: 998  GDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHM 1055

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP+
Sbjct: 1056 VDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPY 1115

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1116 QVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1172


>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
          Length = 1174

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1169 (38%), Positives = 659/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 32   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 91

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 92   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEPIETQHQKTFIGKI 151

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 152  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 211

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 212  GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIV 271

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 272  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 327

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 328  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 440

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 441  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 500

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 501  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 560

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 561  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 618

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R +++F     +  G++EY+D  EE   +IA+
Sbjct: 619  RICRPLLIVENGNLLLKKRHIDMLKE--REYNNFGWQVLVASGVVEYIDTLEEETVMIAM 676

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 677  SPDDLRQEKEYAYCMTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++M
Sbjct: 737  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIM 796

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 797  NASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 849

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ +PG  +  +DV I K   L      +  T +   RY     +    + ET +VD+
Sbjct: 850  DDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTK---RYTKRDASTFLRNSETGIVDQ 906

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 907  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 966

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 967  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 1022

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1023 RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1082

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1083 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1142

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1143 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1171


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1195 (38%), Positives = 664/1195 (55%), Gaps = 91/1195 (7%)

Query: 16   PDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND----RIV 71
            PD++++        D + ++  + + +GLV+Q LDSF+ F+   +++IV  +     R  
Sbjct: 45   PDEEEITQE-----DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 99

Query: 72   SGIDPSIFLRFKD---------VRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI 121
            S  +P     F +         + + +P MT  DG +  L P   RL ++TY+AP+ V++
Sbjct: 100  SQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDV 159

Query: 122  EY---VQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
             Y    +G   E+ T  ME   V IG++PIMLRS  C L+ + E +L  LGECP D GGY
Sbjct: 160  SYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGY 219

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM--EK 228
            FII G+EKVL+ QE++S N V +   ++ N  A      S+  +     S   ++M    
Sbjct: 220  FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRA 279

Query: 229  GKMYLLLNQFVKK--------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSI 277
            G       Q+++         IPI++V +A+G  +D+++++ +     D +   LL PS+
Sbjct: 280  GAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSL 339

Query: 278  EECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPK 337
            EE     I  Q+ AL+Y+ GK + +T G     R   A  IL+   L +V V       K
Sbjct: 340  EEA--FVIQNQQVALDYI-GK-RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKK 395

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQK 393
             +Y   ++ R++   L + A DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK
Sbjct: 396  AYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQK 455

Query: 394  TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSF 453
             VD            +L   I   +IT GL+ +L+TGN+        R G++QVL RL++
Sbjct: 456  CVD-------NGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTY 508

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T  
Sbjct: 509  ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG 568

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
                P++      G E+ E +S   +  P +  +  NG  +G HR P      +R+LRR 
Sbjct: 569  SAANPILEFLEEWGTENFEEISPAVI--PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQ 626

Query: 574  GKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFD 630
              +   V V  + + + + + +D GR  RPL I +     IK+ H++ L         + 
Sbjct: 627  IDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWH 686

Query: 631  DFLREGLIEYLDVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGL 679
            D + +G IEY+D  EE   +I++   D          A  +T TH EI P  ILGV A +
Sbjct: 687  DLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASI 746

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + 
Sbjct: 747  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFR 806

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   
Sbjct: 807  QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFG 866

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            RP+R       M + H S      LDDDGLA PG  +   DV I K SP+    +     
Sbjct: 867  RPNRENT----MGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDA----Q 915

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
            GQ  +RY     +      E+ +VD+V L ++ +G   +K  +R  R P++GDKFSSRHG
Sbjct: 916  GQA-TRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 974

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G    QED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    +
Sbjct: 975  QKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 1034

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F +      TV++IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV 
Sbjct: 1035 PFTDV-----TVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVD 1089

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+H+RG GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V
Sbjct: 1090 DKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRV 1149

Query: 1100 QVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             VC  CGL+   N K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+
Sbjct: 1150 HVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1204


>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
          Length = 1175

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1169 (37%), Positives = 661/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVAKEGEEPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGTLLLKKRHIEMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED+++M
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIM 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N +   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDQESKRVGDQEEQFEKPTRATCQGMR-------NAIYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 851  DDGIIAPGVRVSGDDVVIGKTITLPENDDELEGTTKRFTK-RDASTFLR--NSETGIVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 908  VMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISSLLQEYGYQL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++++G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMFNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
          Length = 1168

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1197 (37%), Positives = 675/1197 (56%), Gaps = 94/1197 (7%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 9    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 60

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 61   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 120

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 121  DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 180

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 181  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 240

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 241  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 300

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 301  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 356

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 357  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 416

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 417  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 469

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 470  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 529

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 530  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 587

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 588  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 647

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 648  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 702

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 703  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 762

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 763  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 822

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L      + 
Sbjct: 823  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 875

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
             T +   RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SR
Sbjct: 876  GTNR---RYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 932

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   
Sbjct: 933  HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEI 990

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHM
Sbjct: 991  GDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHM 1048

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP+
Sbjct: 1049 VDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPY 1108

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1109 QVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1165


>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
          Length = 1175

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1169 (38%), Positives = 662/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVAKEGEEPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IPIMVV 247
                 K  I + +  S+    +  V  M +          G+  + +  ++K+ IPIM+V
Sbjct: 213  GKFAFKAEIRSCLEHSSRPTSTLWVNMMARCGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGTLLLKKRHIEMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPEDLRQEKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED+++M
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIM 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N +   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDQESKRVGDQEEQFEKPTRATCQGMR-------NAIYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 851  DDGIIAPGVRVSGDDVVIGKTITLPENDDELEGTTKRFTK-RDASTFLR--NSETGIVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 908  VMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISSLLQEYGYQL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM 3638]
 gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
 gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM 3638]
 gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
          Length = 1117

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1142 (37%), Positives = 664/1142 (58%), Gaps = 52/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + + +GLV+QHLDS+N F+  G++++V     I   I P   ++F  +R+G+
Sbjct: 13   DLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIKPDI-PDFEVKFGKIRVGE 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TYAAP+ +  I  ++G   +       +V IG +PIM
Sbjct: 72   PEFQEPHGQRKPLYPMDARIRNLTYAAPLYLEMIPVIKGVEQDPV-----EVRIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD-KKGN 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E ++ NR +++ D ++  
Sbjct: 127  LKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEK 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A V S     ++   ++  K G +Y+ +    K +  + VM+A+G+E D+++V+ VG 
Sbjct: 187  YIAKVFSYRHGYRALVAVERRKDGILYVDIPNVPKPVKFVYVMRALGLERDKDIVEAVGN 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DP    ++  ++E+ +  DI TQ++ALE++ GK+     G     R  RA  ++ +  L 
Sbjct: 247  DPEVQQIMFDNLEDAS--DITTQQEALEFI-GKL--VAPGQAREYRLKRAEYVIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   +   K +Y+ +M  +++E  L +   DDKD+  NKRL L+G L+  LF   F 
Sbjct: 302  HMGVSPEDRIKKAYYLGMMALKVIELSLGRRPEDDKDHYANKRLRLAGDLLKDLFRVAFS 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F      +R+SI     T  +E  L+TG +        
Sbjct: 362  QLVKDIQYQMTKTYQRKGDKYTFGNIHRFIRNSIRPDVLTERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+   ++ +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  +      LG+  +E+       +P  + V  NG+++G     
Sbjct: 477  VKNLALMAQITTAVPEEEIREYLMSLGIVPIEVRR----PDPTLWRVYLNGVLIGTIEDG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            K     +R+ RR+GKI + ++V   E  + VY+ SD GRV RPL+I + G+ ++ + H++
Sbjct: 533  KALVQRIRQDRRSGKISDVINVAYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQ 592

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             + +G   + D ++ G+IEYLD  EE NA +A++  + T + TH+E+ P  ILG+ A L+
Sbjct: 593  AVKEGRLKWSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLV 652

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HN +PRNTY   M KQ++G    N   R+D+  +LL YPQ PL+ +R ++ VGY+ 
Sbjct: 653  PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED 712

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
              AGQN  VAV++Y GY++EDAI++NK+S++RG  R    + Y A  +KY    +D+   
Sbjct: 713  RPAGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEI 772

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMS 857
            PD T  G    +  ++ N     LD+DGL  P   ++  DV + + SP   LE RG    
Sbjct: 773  PDPTVRGYRGEK--YYRN-----LDEDGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTV 825

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
               +      + R + KG      VVD+V +    +G   +K  +R  R PELGDKF+SR
Sbjct: 826  SLQERRETSVAVRPSEKG------VVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASR 879

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR   
Sbjct: 880  HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVD 939

Query: 978  GSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            G+AF GEP       E + + L + GF + G++++Y GITG  L+A IF+G IYYQ+L H
Sbjct: 940  GTAFIGEPE------EKLRKELEELGFKHTGREIMYDGITGKRLEADIFIGVIYYQRLHH 993

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ERL+  SD 
Sbjct: 994  MVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDK 1053

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             EV VC  CG +   + + +   C  C   + IS +++ YA KLL+ EL++M I P+L L
Sbjct: 1054 TEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113

Query: 1157 AE 1158
            +E
Sbjct: 1114 SE 1115


>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
          Length = 1176

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1167 (37%), Positives = 656/1167 (56%), Gaps = 77/1167 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I    +           P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVENPPRYLLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 94   LSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKSIVKEGEEAVETQHQKTFIGKI 153

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 154  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 213

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  + +G           ++  ++    ++IPIM+V
Sbjct: 214  GKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIV 273

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R   
Sbjct: 274  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP-- 329

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 330  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 389

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 390  GNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFID-------RGKDFNLELAIKTRIIT 442

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 443  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 502

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 503  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 562

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 563  ADATKIFV--NGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 620

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I + G   +K+ H   +KE       + D +  G++EY+D  EE   +IA+  
Sbjct: 621  RICRPLLIVEGGKLSLKKRHIEMLKEREYNNYGWQDLVASGVVEYIDTLEEETVMIAMSP 680

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 681  EDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 740

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED+++MN 
Sbjct: 741  NFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIMNT 800

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K +    ++  +P R      R       N +   LDDD
Sbjct: 801  SAVERGFFRSVFYRAYKDQECKRSGDQEEQFEKPTRESCQGMR-------NAIYDKLDDD 853

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  S+ R A    +  + ET +VD+V 
Sbjct: 854  GIIAPGIRVSGDDVIIGKTITLPITDDELEGTTKRFSK-RDASTFLR--NSETGIVDQVM 910

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+N
Sbjct: 911  VTLNNEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIIN 970

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK  VS  +   G A   P      V+ IS  L ++G+   G
Sbjct: 971  PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDTVNVQKISNLLQEYGYQLRG 1026

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1027 NEVMYNGQTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1086

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC IA+GA+  + ERL   SDP+ V VC +CGL+   N +     C  CKN  
Sbjct: 1087 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFECKGCKNKT 1146

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1147 QISQVRLPYAAKLLFQELMAMNIAPRL 1173


>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
          Length = 1175

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1165 (37%), Positives = 660/1165 (56%), Gaps = 73/1165 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNIALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLE 424
            GNKRL+L+G L++ LF  LFK ++ EV+      + K      F+L   I    IT GL 
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDK---GKDFNLELAIKTKIITDGLR 445

Query: 425  RTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
             +L+TGN+ D K+  M R G++QVL RL+F  TL H+ RV+    +  K++ PR L  + 
Sbjct: 446  YSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 505

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   + +  
Sbjct: 506  WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 565

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCR 602
               V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D GR+CR
Sbjct: 566  KIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICR 623

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIALYEGD 657
            PL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +I++   D
Sbjct: 624  PLLIVEGGSLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMISMSPDD 681

Query: 658  ATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
               D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 682  LRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++MN S+
Sbjct: 742  HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASA 801

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            ++RGF R +  + Y     K      ++  +P R      R       N L   LDDDG+
Sbjct: 802  VERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLDDDGI 854

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             +PG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V L 
Sbjct: 855  ISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTK-RDASTFLR--NSETGIVDQVMLT 911

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
             +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+NPH
Sbjct: 912  LNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPH 971

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+   G +
Sbjct: 972  AIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLRGNE 1027

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGLR 
Sbjct: 1028 VMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 1087

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN   I
Sbjct: 1088 GEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQI 1147

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRL 1154
            S ++LPYA KLL QEL +MNI PRL
Sbjct: 1148 SQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
          Length = 1173

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1169 (37%), Positives = 658/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 31   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTSGEIENPPRYLLKFEQIY 90

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V+    E          IG+I
Sbjct: 91   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDILKRVEKHKEEPVETLHQKTFIGKI 150

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 151  PIMLRSTYCLLSTLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 210

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPI++ 
Sbjct: 211  GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAILPYIKQEIPIIIA 270

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R   
Sbjct: 271  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGTRGARP-- 326

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 327  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 386

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 387  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 439

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 440  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 499

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 500  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 559

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 560  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 617

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R +D++     + EG++EY+D  EE   +IA+
Sbjct: 618  RICRPLLIVENGSLLLKKRHIDRLKE--RDYDNYGWQMLVAEGVVEYIDTLEEETVMIAM 675

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 676  SLDDLRHDKSYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 735

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++M
Sbjct: 736  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIM 795

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 796  NASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 848

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ +PG  +  +DV I K   L      +  T +   RY     +    + ET +VD+
Sbjct: 849  DDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTK---RYTKRDASTFLRNSETGIVDQ 905

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I
Sbjct: 906  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDII 965

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 966  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISSLLQEYGYQL 1021

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1022 RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1081

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1082 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1141

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1142 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1170


>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1189 (38%), Positives = 657/1189 (55%), Gaps = 97/1189 (8%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPSIF 79
            + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +I+
Sbjct: 29   WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIY 88

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTTME 135
             + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    V+  H  +   E
Sbjct: 89   KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEVTE 148

Query: 136  KND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
              D   V IG++PIMLRS  C LY   E +L  LGECP D GGYFII G+EKVL+ QE++
Sbjct: 149  TQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208

Query: 193  SKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--LLN 236
            S N V +   ++ N  A V              ST  V+  S+T  +      Y+   L 
Sbjct: 209  STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLP 268

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALE 293
                +IPI++V +A+G  +D+++++ +     D     LL PS+EE     I  Q+ AL+
Sbjct: 269  YIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEA--FVIQNQQVALD 326

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++   L
Sbjct: 327  YI-GK-RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 384

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD            +
Sbjct: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKDVN 437

Query: 410  LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
            L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++    +
Sbjct: 438  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G E
Sbjct: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
            + E +S   +  P +  +  NG  +G HR P      +RKLRR   +   V V  +   +
Sbjct: 558  NFEEISPAVI--PQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIILK 615

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVRSFDDFLREGLIEYLDV 643
             + I +D GR  RPL I DK    IK+  +  L       DG   + D + +G IEY+D 
Sbjct: 616  ELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDG--GWHDLVSKGFIEYIDT 673

Query: 644  NEENNALIA-----LYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I+     L +    P+       TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 674  EEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 733

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 734  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 793

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR    A  M 
Sbjct: 794  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ANTMG 849

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL---ETRGSIMSPTGQTDSRYRSA 869
            + H S      LDDDGLA PG  +   DV I K +P+   E +G  +        RY   
Sbjct: 850  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL--------RYTRR 898

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
              +      ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    
Sbjct: 899  DHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYT 958

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
            QED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      
Sbjct: 959  QEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV----- 1013

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
            TV++IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP
Sbjct: 1014 TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGP 1073

Query: 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 1109
              +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+ 
Sbjct: 1074 VQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIA 1133

Query: 1110 YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              N K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+   E
Sbjct: 1134 IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKE 1182


>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
          Length = 1176

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1169 (38%), Positives = 661/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGSLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++M
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIM 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 798  NASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ +PG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 851  DDGIISPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTK-RDASTFLR--NSETGIVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 908  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYHL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
            guttata]
          Length = 1174

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1198 (37%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     ++   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ R+     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
          Length = 1176

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1169 (37%), Positives = 657/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E    E     IG+I
Sbjct: 93   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIKDGQEPVVTEHEKSFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTFCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F++   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNMELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I +     +K  H+  L    R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENQTLLLKRSHVDNLKQ--RDYNNYKWQELVSSGVVEYIDTLEEETTMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 738  ITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P+R+     R       N +   LD
Sbjct: 798  NASAVERGFFRSVFFRSYKDSESKRIGDQEEQFEKPNRSTCQGMR-------NAIYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +VD+
Sbjct: 851  DDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTK---RYSKRDASTFLRNSETGIVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 908  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G +G  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNYCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
          Length = 1175

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1169 (37%), Positives = 660/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEVETPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIIREGEEPIESQHQKSFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGQLLLKKRHIENLKE--RDYNNYGWQVLVSSGVVEYIDTLEEETTMIAI 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N +   LD
Sbjct: 798  NASAVERGFFRSVFFRSYKDAESKRVGDQEEQFEKPMRQTCQGMR-------NAIYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 851  DDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTKKFTK-RDASTFLR--NSETGIVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 908  VMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC I++GA+  + ERL   SDP+ + VC +CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
 gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
          Length = 1170

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1179 (37%), Positives = 672/1179 (56%), Gaps = 88/1179 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------------RANDRIVSGID 75
            D + ++  + + +GLV+Q LDSF+ F+   +++I+                   +VS   
Sbjct: 22   DVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNV 81

Query: 76   PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTT 133
             +  ++F  + + +P+  +DGVS+++ P+  R+ ++TY+AP+ V+I    + GS ++   
Sbjct: 82   STFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDE 141

Query: 134  MEKNDVV----IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
               ++V+    IG++PIMLRS  C+L   D+ +L  +GEC  D GGYFII G+EKVL+ Q
Sbjct: 142  RRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQ 201

Query: 190  EQLSKNRVII---DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----- 241
            E+++ N V +       K +  A + S  ET    T        MYL +     K     
Sbjct: 202  EKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPT------STMYLKMLHNTNKGPVGI 255

Query: 242  ----------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQ 288
                      +P+++V +A+G  +D+++++ +    +D +   L+ PS+EE  +  I +Q
Sbjct: 256  KATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEE--SFVIQSQ 313

Query: 289  EKALEYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
            E AL+YL GK + ST G+    RE R   A  +L+   L +V V       K FY   + 
Sbjct: 314  EVALDYL-GK-RGSTMGT----REQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYIT 367

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+  NKRL+L+G L+  LF  LFK +  +V+  +   + K    
Sbjct: 368  HRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDK---D 424

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
              F  S  +   +IT GL+ +L+TGN+   +    + G+ QVL RL+F  TL H+ R++ 
Sbjct: 425  KEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNT 484

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +  K++ PR L  + WG++CP +TPEG+ACGLVKNLA+M++++      P++     
Sbjct: 485  PIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEE 544

Query: 526  LGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
               E+LE +S  +L +  S   IF NG+ +G H +P      +R LRR G +   VSV  
Sbjct: 545  WTTENLEEIS--DLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVR 602

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-SFDDFLREGLIEYLDV 643
            + +++ + + +D GR CRPL +      +IK+ H+ +L++     + D L EG++EY+D 
Sbjct: 603  DIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDA 662

Query: 644  NEENNALIALYEGDATP--------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQC 695
             EE   LIA+   D  P          TH EI P  ILG+   +IP+P HNQSPRNTYQ 
Sbjct: 663  EEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQA 722

Query: 696  AMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 755
            AMGKQAMG    N   RMD++ ++L YPQ+PL+TTR++E + + +L AGQN  VA+  YS
Sbjct: 723  AMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYS 782

Query: 756  GYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVH 815
            GY+ ED++++N+S++DRG  R +  + Y    +K  +   +   +P+R      R    H
Sbjct: 783  GYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMR----H 838

Query: 816  HSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG 875
             S      +DDDGL APG  +  +D+ I K +PL      + P  +  ++  S+      
Sbjct: 839  GS---YEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRSS 895

Query: 876  PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF 935
               ET +VD+V L +   G    K  +R  R P++GDKFSSRHGQKG CG   +QED PF
Sbjct: 896  ---ETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPF 952

Query: 936  SERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESIS 995
            +  GI PD+I+NPH  PSRMT+G++IE L GK   S G     + F +      TVE+IS
Sbjct: 953  TVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDV-----TVEAIS 1007

Query: 996  ETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTR 1055
            + L K G+   G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +LTR
Sbjct: 1008 QALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTR 1067

Query: 1056 QPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKL 1115
            QP EGR+R+GGLR GEMERDC+I++GA+  + ERL   SD + V +C +CGL+   N K 
Sbjct: 1068 QPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICDICGLIAIANLKK 1127

Query: 1116 KAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +  C  CKN   IS +++PYA KLL QEL SM+I PR+
Sbjct: 1128 NSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRM 1166


>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
          Length = 1175

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1169 (37%), Positives = 658/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTRIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R +++F     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVEGGNLLLKKRHVDMLKE--REYNNFGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPTRATCQGMR-------NALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +VD+
Sbjct: 851  DDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTK---RYTKRDASTFLRNSETGIVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD+I
Sbjct: 908  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTAEGLTPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
 gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
            [Pyrococcus horikoshii OT3]
          Length = 1117

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1142 (37%), Positives = 659/1142 (57%), Gaps = 52/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + + +GLV+QHLDS+N F+  G++++V     I   I P   ++F  +R+G+
Sbjct: 13   DLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGIKPDI-PDFEVKFGKIRVGE 71

Query: 90   PSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  ++G   +       +V IG +PIM
Sbjct: 72   PEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQDPV-----EVRIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD-KKGN 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E ++ NR +++ D ++  
Sbjct: 127  LKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEK 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A V S     ++   ++ +K G +Y+ +    + +  + VM+A+G+E D+++V  VG 
Sbjct: 187  YIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVDAVGN 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DP    +L  ++E+ +  DI TQ++ALEY+ GK+     G     R  RA  ++ +  L 
Sbjct: 247  DPEVQQILFDNLEDAS--DITTQQEALEYI-GKL--VAPGQAREYRLKRAEYVIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   +   K +Y+ +M  +++E  L K   DDKD+  NKRL L+G L+  LF   F 
Sbjct: 302  HMGVTPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFS 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             +I ++Q  +     +      F      +R+SI     T  +E  L+TG +        
Sbjct: 362  QLIKDIQYQMTKTYQRRGEKYVFSNIHRFIRNSIRPDVLTERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+   ++ +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  +      LG+  +E+       +P  + V  NG+++G     
Sbjct: 477  VKNLALMAQITTAVPEEEVREYLMSLGIVPIEVRRP----SPELWRVYLNGVLIGTVEDG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            K   + ++K RR+GKI + ++V   E  + VY+ SD GRV RPL+I + G+ ++ + H++
Sbjct: 533  KALVERIKKDRRSGKISDIINVAYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQ 592

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             + +G   + D +R G+IEYLD  EE NA +A++  + T + TH+E+ P  ILG+ A LI
Sbjct: 593  AIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLI 652

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HN +PRNTY   M KQ++G    N   R+D+  +LL YPQ PL+ +R ++ VGY+ 
Sbjct: 653  PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED 712

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
              AGQN  VAV++Y GY++EDAI++NK+S++RG  R    + Y A  +KY    +DR   
Sbjct: 713  RPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEI 772

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMS 857
            P  T  G    +   H       LD+DGL  P   ++  DV I + SP   LE RG    
Sbjct: 773  PAPTVRGYRGEKYYRH-------LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAV 825

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
               +      + R + KG      +VD+V +    +G   +K  +R  R PE+GDKF+SR
Sbjct: 826  SLQERRETSVAVRPSEKG------IVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASR 879

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG+++E +GGK     GR   
Sbjct: 880  HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939

Query: 978  GSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            G+AF GEP       E + + L + GF + G++++Y GITG   +A IF+G IYYQ+L H
Sbjct: 940  GTAFIGEPE------EKLRKELEELGFKHTGREIMYDGITGKRFEADIFIGIIYYQRLHH 993

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ERL+  SD 
Sbjct: 994  MVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDK 1053

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I P+L L
Sbjct: 1054 TEVWVCENCGHIAIEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113

Query: 1157 AE 1158
             E
Sbjct: 1114 TE 1115


>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
            [Saccoglossus kowalevskii]
          Length = 1175

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1204 (37%), Positives = 671/1204 (55%), Gaps = 108/1204 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR------ 65
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIE 66

Query: 66   -----ANDRIVSGIDPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
                  +  I   +     L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEATHTTIEVEVPTRYILKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            +I      +G   ++T  +K    IG+IPIMLRS  C+L G  + +L  L ECPLDPGGY
Sbjct: 127  DITKTIVKEGDEPQETQHQK--TFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGY 184

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG- 229
            FII G+EKVL+ QE+++ N V +   K       G   + +  S+    +  V  M +G 
Sbjct: 185  FIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLEHSSRPTSTLWVHMMARGG 244

Query: 230  ----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                      ++   L    ++IPIM+V +A+G  SD+++++ +     DP    ++ PS
Sbjct: 245  QGVRKSAIGQRIVAALPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            ++E     I  Q  AL ++  +  R   G     R   A  IL+   L +V V +     
Sbjct: 305  LDEA--FVIQEQNVALNFIGARGARP--GVTKERRIKYAREILQKEMLPHVGVSDFCETK 360

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    Q
Sbjct: 361  KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRHLFKNLMKEVRIYAQ 420

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARL 451
            K +D       +   F+L   I    IT GL+ +L+TGN+ + K+    R G++QVL RL
Sbjct: 421  KFID-------KGKDFNLELAIKTRIITDGLKYSLATGNWGEQKKAHQARAGVSQVLNRL 473

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            +F  TL H+ R++    +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM +++
Sbjct: 474  TFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYIS 533

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P++       +E+LE ++   ++      V  NG  +G HR P+   + ++KLR
Sbjct: 534  VGSQPSPILEFLEEWSMENLEEIAASAINEATKIFV--NGCWVGIHRDPEQLMNTLKKLR 591

Query: 572  RAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVR 627
            R   I    VS+  + +++ + I +D GR+CRPL+I +K    +K+ H   +KE      
Sbjct: 592  RQMDIIVSEVSMVRDIREKEIRIYTDAGRICRPLLIVEKQKLLLKKKHIDMLKEREYNNY 651

Query: 628  SFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGV 675
            S+ D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV
Sbjct: 652  SWQDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGMGYCSTYTHCEIHPSMILGV 706

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E 
Sbjct: 707  CASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEY 766

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + + +L AG N+ VA+ SY+GY+ ED+++MN S+++RGF R +  + Y     K      
Sbjct: 767  LRFRELPAGINSIVAIASYTGYNQEDSVIMNLSAVERGFFRSVFYRSYRDQESKKGLDQE 826

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK-----ESPLE 850
            +   +PDR      RM V          LDDDG+ APG  +  +DV I K     E+  E
Sbjct: 827  EVFEKPDRESCQGMRMAVYDK-------LDDDGIIAPGSRVSGDDVLIGKTVTLPENDDE 879

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
              G+    T +  S +   R+T      ET +VD+V +  ++ G    K  IR  R P++
Sbjct: 880  LEGTTRRFTKRDSSTF--MRRT------ETGIVDQVMVSINQEGYKFCKIKIRSVRIPQI 931

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK   
Sbjct: 932  GDKFASRHGQKGTCGIQYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLQGKVSA 991

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
            + G     + F +       V+ IS  L ++G+   G +++Y+G TG  L   IF+GP Y
Sbjct: 992  NKGEIGDATPFNDTV----NVQKISNLLHEYGYHLRGNEVLYNGFTGRKLGTQIFIGPTY 1047

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+LKHMV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC I++GA+  + ERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPLQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERL 1107

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
               SDP+ V VC +CGL+   N +     C  CKN   IS ++LPYACKLL QEL SM+I
Sbjct: 1108 FEVSDPYRVHVCNLCGLIAIANLRNNTFECRGCKNKTQISQIRLPYACKLLFQELMSMSI 1167

Query: 1151 VPRL 1154
             PR+
Sbjct: 1168 APRM 1171


>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1215

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1222 (36%), Positives = 676/1222 (55%), Gaps = 111/1222 (9%)

Query: 15   LPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV--- 71
            LPD+Q       +  D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  +V   
Sbjct: 18   LPDEQMYEDESITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVLQH 77

Query: 72   ----SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI----E 122
                  +     + F  + + +P+MT  DG S+ + P   R+ ++TYAAP+ +++    +
Sbjct: 78   VGGDGDVTKRYIIDFGQIYLSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQ 137

Query: 123  YVQGSHTEKTTMEKND--------------VVIGRIPIMLRSCRCVLYGKDEAELARLGE 168
              +           ND              V +G++P+MLRS  C+L+   E E+  L E
Sbjct: 138  IARPQDPNNPITNPNDFFIDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNE 197

Query: 169  CPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTET---VKSKT 222
            C  D GGYF+I G+EKVL+ QE+++ N V + +       + +A + S  E      S  
Sbjct: 198  CSFDMGGYFVINGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPL 257

Query: 223  VIQM-----EKGKMYLLLNQFVK--------KIPIMVVMKAMGMESDQEVVQMV---GRD 266
             I+M     E+G       QF++        +IP+++V +A+G  SD++V++ +     D
Sbjct: 258  FIKMMRPSAERGTA----GQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRND 313

Query: 267  PRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLAN 326
                 LL PSIEE     I  Q+ AL+++ GK + +T G+    R   A  IL+   L +
Sbjct: 314  YEMLELLKPSIEEA--FVIQDQDVALDFI-GK-RGTTVGATRERRIKYASEILQKELLPH 369

Query: 327  VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKT 386
            V         K ++   M+ R++ A L +  +DD+D+ G KR++L+G L++ LF  LF+ 
Sbjct: 370  VGTAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRILFRK 429

Query: 387  MISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGM 444
            +  +V K     L K   SSR F+LS  +  ++IT GL+ +L+TGN+ D K+    R G+
Sbjct: 430  LTRDVAK----YLQKCIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGV 485

Query: 445  TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
            +QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL
Sbjct: 486  SQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 545

Query: 505  ALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFA 564
            ALM++++      PLI       +E+LE LS   +   +S  V  NG+ +G HR P    
Sbjct: 546  ALMSYISVGSSANPLIMFLEEWAMENLEELSATSI--ADSTKVFVNGVWIGIHRDPGELI 603

Query: 565  DVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD 624
              ++++RR+  I   VS+  + +++ + + +D GR CRPL + +    R+    +  L D
Sbjct: 604  TSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTREDVGRLQD 663

Query: 625  GVRSF--DDFLREGLIEYLDVNEENNALIAL----------------------------- 653
                F   D + EG++EY+D +EE  A+I +                             
Sbjct: 664  PDDDFGWQDLIAEGIVEYVDADEEETAMICMTPEDLAESRMATQYGAPLQQTRSLASRVK 723

Query: 654  -YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
               G  T   TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 724  SQTGTYTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMR 783

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MD+L  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DR
Sbjct: 784  MDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 843

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R +  + Y    +K      +   +P R       +++ H +      L++DGL AP
Sbjct: 844  GLFRSLFFRTYMDAEKKAGMMFMEEFEKPTREST----LRLKHGT---YEKLEEDGLIAP 896

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +  +D+ I K +P+      +   GQ  + +     +      ET +VD+V L +++
Sbjct: 897  GTRVSGDDIIIGKTAPIPAESEEL---GQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQ 953

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +G   +K  +R TR P++GDKF+SRHGQKG  G   +QEDFPFS  GI PDLI+NPH  P
Sbjct: 954  DGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIP 1013

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMT+G +IE L GK     G     + F +      TVE+IS+ L   G+   G +++Y
Sbjct: 1014 SRMTIGHLIECLLGKVSTLTGNEGDATPFTDV-----TVEAISQALQAQGYQQRGFEVMY 1068

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            +G TG  L A +F+GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEM
Sbjct: 1069 NGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEM 1128

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERDC+I++G +  + ERL  +SD + V VC +CGL+   N K     C +CKN   IS +
Sbjct: 1129 ERDCMISHGVAQFLKERLFDASDAYRVHVCDICGLMAIANLKKNNFECRSCKNKTRISQI 1188

Query: 1133 KLPYACKLLIQELQSMNIVPRL 1154
             +PYACKLL QEL +MNI PR+
Sbjct: 1189 HIPYACKLLFQELMAMNIAPRM 1210


>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
          Length = 1151

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1171 (38%), Positives = 657/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 8    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 67

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     +    +     IG+I
Sbjct: 68   LSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKI 127

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 128  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 187

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  + +G           K+  +L    ++IPIM+V
Sbjct: 188  GKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIV 247

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++ G+      
Sbjct: 248  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGGR------ 299

Query: 305  GSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            G+ P   RE R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD
Sbjct: 300  GAKPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDD 359

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVR 416
            +D+ GNKRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+L   I  
Sbjct: 360  RDHYGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFID-------RGKDFNLELAIKT 412

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
              IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ 
Sbjct: 413  KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAK 472

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++
Sbjct: 473  PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 532

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIA 594
               + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I 
Sbjct: 533  PSAIADATKIFV--NGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIY 590

Query: 595  SDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALI 651
            +D GR+CRPL+I + G   +K+ H   +KE       + D +    +EY+D  EE   +I
Sbjct: 591  TDAGRICRPLLIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSAVEYIDTLEEETVMI 650

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 651  AMSLDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 710

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED++
Sbjct: 711  VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSV 770

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN S+++RGF R + ++ Y     K      ++  +P R      R       N +   
Sbjct: 771  IMNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMR-------NAIYDK 823

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +V
Sbjct: 824  LDDDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTK---RYTKRDASTFLRNSETGIV 880

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD
Sbjct: 881  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPD 940

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+
Sbjct: 941  IIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISALLQEYGY 996

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++++G +G  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 997  QLRGNEVMFNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1056

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  C
Sbjct: 1057 DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGC 1116

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1117 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1147


>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
          Length = 1176

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1167 (37%), Positives = 656/1167 (56%), Gaps = 77/1167 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  + +G           K+  +L    ++IPIM+V
Sbjct: 213  GKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++ G+  +   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGGRGAKP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I + G   +K+ H   +KE       + D +    +EY+D  EE   +IA+  
Sbjct: 620  RICRPLLIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSAVEYIDTLEEETVMIAMSL 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  DDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED+++MN 
Sbjct: 740  NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNA 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R + ++ Y     K      ++  +P R      R       N +   LDDD
Sbjct: 800  SAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMR-------NAIYDKLDDD 852

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +   RY     +    + ET +VD+V 
Sbjct: 853  GIIAPGIRVSGDDVIIGKTITLPENDDELEGTTR---RYTKRDASTFLRNSETGIVDQVM 909

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIIN 969

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 970  PHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISALLQEYGYQLRG 1025

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++++G +G  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1026 NEVMFNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN  
Sbjct: 1086 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKT 1145

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1146 QISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
          Length = 1150

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1169 (37%), Positives = 660/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 8    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYLLKFEQIY 67

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     +    +     IG+I
Sbjct: 68   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKEGEDPIDTQHQKTFIGKI 127

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K 
Sbjct: 128  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKD 187

Query: 205  GNI-----------NASVTSSTETVK-----SKTVIQMEKGKMYLLLNQFVKK-IPIMVV 247
            G             ++S  +ST  V       +++ +   G+  + +  ++K+ IPIM+V
Sbjct: 188  GKFAYKAEIRSCQEHSSRPTSTLWVNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIV 247

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 248  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 303

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L++  +DD+D+ 
Sbjct: 304  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDRDHY 363

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 364  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 416

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 417  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 476

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 477  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 536

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 537  LDATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 594

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I +     +K+ H+  L D  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 595  RICRPLLIVENSNLLLKKRHIDMLKD--RDYNNYGWQFLVSSGVVEYIDTLEEETVMIAM 652

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 653  SPEDLHHDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 712

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED+++M
Sbjct: 713  ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIM 772

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R I  + Y     K      ++  +P+R      R       N +   LD
Sbjct: 773  NASAVERGFFRSIFYRSYKDQESKRIGDQEEQFEKPNRATCQGMR-------NAIYDKLD 825

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +VD+
Sbjct: 826  DDGIIAPGVRVSGDDVIIGKTITLPENDDELEGTTK---RYTKRDASTFLRNSETGIVDQ 882

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD++
Sbjct: 883  VMITLNSEGYKFSKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIV 942

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 943  INPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISSLLQEYGYHL 998

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 999  RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1058

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1059 GLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1118

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1119 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1147


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1202 (38%), Positives = 660/1202 (54%), Gaps = 105/1202 (8%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPSIF 79
            + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +I+
Sbjct: 30   WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIY 89

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTTME 135
             + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +   E
Sbjct: 90   KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTE 149

Query: 136  KND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
              D   V IG++PIMLRS  C LY   E +L  LGECP D GGYFII G+EKVL+ QE++
Sbjct: 150  TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 209

Query: 193  SKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLLNQ 237
            S N V +   ++ N  A      S+  S     S   ++M           G+       
Sbjct: 210  STNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLP 269

Query: 238  FVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALE 293
            +++ +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ AL+
Sbjct: 270  YIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQQVALD 327

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            Y+ GK + ST G     R   A  IL+   L +V V       K +Y   ++ R++   L
Sbjct: 328  YI-GK-RGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 385

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD            +
Sbjct: 386  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKDVN 438

Query: 410  LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
            L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++    +
Sbjct: 439  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 498

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G E
Sbjct: 499  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 558

Query: 530  DLELLSGEELHN------PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF--VS 581
            + E+L    +        P +  +  NG  +G HR P      +RKLRR      F  V 
Sbjct: 559  NFEVLVISFIKEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEGFDVVQ 618

Query: 582  VFVNEKQRCVY--------IASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVR 627
            V VN +   V         I +D GR  RPL I DK    IK+  +  L       DG  
Sbjct: 619  VDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDG-- 676

Query: 628  SFDDFLREGLIEYLDVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVI 676
             + D + +G IEY+D  EE   +I++   D          A  DT TH EI P  ILGV 
Sbjct: 677  GWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVC 736

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E +
Sbjct: 737  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL 796

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +
Sbjct: 797  HFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 856

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
               RPDR    A  M + H S      LDDDGLA PG  +   DV I K +PL    S  
Sbjct: 857  DFGRPDR----ANTMGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPL----SQE 905

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
               GQ  +RY     +      ET +VD+V L ++ +G   +K  +R  R P++GDKFSS
Sbjct: 906  EQQGQA-ARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSS 964

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG  G    QED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+  
Sbjct: 965  RHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEG 1024

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F +      TV++IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKH
Sbjct: 1025 DATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKH 1079

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+RG GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD 
Sbjct: 1080 MVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDA 1139

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            + V VC  CGL+   N K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+  
Sbjct: 1140 YRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1199

Query: 1157 AE 1158
             E
Sbjct: 1200 KE 1201


>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
          Length = 1176

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1169 (37%), Positives = 657/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F  + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHSSGEIETPPKYLLKFDQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +   + E    +   + IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKENEEPIETQHQKIFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSNLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  ++    ++IPIM+V
Sbjct: 213  GKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGALLLKKKHIDHLKE--RDYNNYGWQNLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDAT--------PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D             TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPDDLAQVKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDSESKRLGDQEEQFEKPTRQTCQGMR-------NALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +   RY     +    + ET +VD+
Sbjct: 851  DDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTR---RYTKRDASTFLRNSETGIVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I
Sbjct: 908  VMVTLNREGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECIQGK--VSSNKGEIGDA--TPFNDAVNVQKISSLLQEYGYHL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
 gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
          Length = 1117

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1142 (38%), Positives = 662/1142 (57%), Gaps = 52/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + + +GLV+QHLDS+N F+  G++++V     I   I P   ++F  +R+GQ
Sbjct: 13   DLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGIKPDI-PDFEVKFGKIRVGQ 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  ++G   E       +V IG +PIM
Sbjct: 72   PEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPV-----EVRIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E ++ NR +++ D++   
Sbjct: 127  LKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQER 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A V S     ++   ++ +K G +Y+ +    K I  + VM+A+G+E D+++V  VG 
Sbjct: 187  YVAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPIKFVYVMRALGLERDRDIVDAVGN 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DP    +L  ++E+ +  DI TQ++ALEY+ GK+     G     R  RA  ++ +  L 
Sbjct: 247  DPEVQQILFDNLEDAS--DITTQQEALEYI-GKL--VAPGQAREYRLKRAEYVIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V+  +   K +Y+ +M  +++E  L +   DDKD+  NKRL L+G L+  LF   F 
Sbjct: 302  HMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYANKRLRLAGDLLKDLFRVAFG 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F      +R+SI     T  +E  L+TG +        
Sbjct: 362  QLVKDIQYQMTKTYQRKGEKYTFGNIHRFIRNSIRPDVLTERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+   ++ +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM+ +TT   E  +      LG+  +E+       +P  + V  NG+++G     
Sbjct: 477  VKNLALMSQITTAVPEEEVKEYLMSLGIVPIEVRR----PSPELWRVYLNGVLIGTIEDG 532

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            K  A  +R+ RR GKI + ++V   E  + VY+ SD GRV RPL+I + G  ++ + H++
Sbjct: 533  KALAQRIRQDRRNGKISDVINVAYYEDVKEVYVNSDDGRVRRPLIIVENGKPKLTKEHVQ 592

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLI 680
             + +G   + D +R G+IEYLD  EE NA +A++  + T + TH+E+ P  ILG+ A L+
Sbjct: 593  AVKEGRLKWSDLIRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLV 652

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            PYP HN +PRNTY   M KQ++G    N   R+D+  +LL YPQ PL+ +R ++ VGY+ 
Sbjct: 653  PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVDSRIMKAVGYED 712

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
              AGQN  VAV++Y GY++EDAI++NK+S++RG  R    + Y A  +KY    +D+   
Sbjct: 713  RPAGQNFIVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEI 772

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMS 857
            P  T  G    +  ++ N     LD+DGL  P   ++  DV I + SP   LE RG    
Sbjct: 773  PAPTVRGYRGEK--YYRN-----LDEDGLIFPESRVEGKDVLIGRTSPPRFLEERGLGSV 825

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
               +      + R + KG      VVD+V +    +G   +K  +R  R PELGDKF+SR
Sbjct: 826  ALQERRETSVAVRPSEKG------VVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASR 879

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK     GR   
Sbjct: 880  HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVD 939

Query: 978  GSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
            G+AF GEP       E + + L + GF + G++++Y GITG  L+A IF+G IYYQ+L H
Sbjct: 940  GTAFIGEPE------EKLRKELEELGFKHTGREIMYDGITGRRLEADIFVGVIYYQRLHH 993

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ERL+  SD 
Sbjct: 994  MVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDK 1053

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I P+L L
Sbjct: 1054 TEVWVCENCGHIAIEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113

Query: 1157 AE 1158
             E
Sbjct: 1114 TE 1115


>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
 gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
          Length = 1176

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1175 (37%), Positives = 667/1175 (56%), Gaps = 87/1175 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGTLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             DDDG+ APG  +  +DV I K   L E    + S T +   R  S        + ET +
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLR----NSETGI 905

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ P
Sbjct: 906  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAP 965

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G
Sbjct: 966  DIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYG 1021

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1022 YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1081

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  
Sbjct: 1082 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKG 1141

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            CKN   IS ++LPYA KLL QEL SMNI PRL ++
Sbjct: 1142 CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVS 1176


>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
          Length = 1150

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1169 (37%), Positives = 661/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 8    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 67

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 68   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDEPMESQHQKTFIGKI 127

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 128  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 187

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  ++    ++IPIM+V
Sbjct: 188  GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIMPYIKQEIPIMIV 247

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     D     ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 248  FRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 303

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 304  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFKT++ EV    QK +D       R   F+L   I    IT
Sbjct: 364  GNKRLDLAGPLLAFLFRGLFKTLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 416

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 417  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 476

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 477  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 536

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 537  ADATKIFV--NGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 594

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L D  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 595  RICRPLLIVENGKLLLKKRHIDMLKD--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 652

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 653  MTEDMKHEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 712

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++M
Sbjct: 713  ITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIM 772

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 773  NASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 825

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+
Sbjct: 826  DDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTK-RDASTFLR--NSETGIVDQ 882

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 883  VMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 942

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 943  INPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISALLQEYGYQL 998

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGR+R+G
Sbjct: 999  RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRSRDG 1058

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1059 GLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1118

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1119 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1147


>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
            queenslandica]
          Length = 1175

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1181 (37%), Positives = 665/1181 (56%), Gaps = 89/1181 (7%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIFLRFKD 84
            ++  +   +GLV+Q LDSF+ F+   +++IV     +          S   P   L+F+ 
Sbjct: 29   VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPPLELQAEAQYDDSDTPPKYSLKFEQ 88

Query: 85   VRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-DVVIG 142
            + + +P+    DG +  L P+  RL ++TY+AP+ V+++       E +  + +    IG
Sbjct: 89   IYLSKPTHWEKDGKAVYLMPNEARLRNLTYSAPLYVDVKKTIIYEDEDSKEDPHPKTFIG 148

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 149  KIPIMLRSTYCLLSQLTDRDLNELNECPLDPGGYFIINGSEKVLIAQEKMATNTVHVFSK 208

Query: 203  KK------GNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K+        I + + +S+  V +  V Q+ +G           K+   L    ++IPIM
Sbjct: 209  KESKYAHTAEIRSYIENSSRPVSTLWVSQLSRGGTGVKKSAIGQKIVATLPYIKQEIPIM 268

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  SD+++++ +     D     +L PS++E     I  Q  AL ++   V+ +
Sbjct: 269  IVFRALGFVSDRDILEHIIYDFTDIEMMEMLKPSLDEA--FVIQEQNVALNFI--GVRGA 324

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G     R   A  IL+   L +V V +     K +++  M+ R+++A L +  +DD+D
Sbjct: 325  KPGVTREKRIKYAKDILQKELLPHVGVSSFCETRKAYFLGYMVHRLLQAALGRRELDDRD 384

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LF+ +  EV    QK +D       +   F+L   I   +
Sbjct: 385  HYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLYAQKFID-------KGRDFNLELAIKTKT 437

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K++ PR
Sbjct: 438  ITDGLRYSLATGNWGDQKKAHQTRAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPR 497

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 498  QLHNTHWGMICPAETPEGHAVGLVKNLALMGYISVGSQPAPILEFLEEWSMENLEEITPS 557

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + N     V  NG  +G HR P+     +R+LRR   I    VS+  + ++R + I +D
Sbjct: 558  VIANSTKIFV--NGNWVGIHREPEHLMTTLRRLRRQMDIIVSEVSMVRDIREREIRIFTD 615

Query: 597  GGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
             GR+CRPL+I +     +K+HH   +KE      S+ D +  G++EY+D  EE   +IA+
Sbjct: 616  AGRICRPLLIVENQKLLLKKHHIQMLKEREYNNASWQDLVAGGVVEYIDCLEEETVMIAM 675

Query: 654  YEGDATPD--------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D + +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 676  TPDDLSTEGGASYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 735

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YPQ+PL+TTR++E + + +L AG NA VA+ SY+GY+ ED+++M
Sbjct: 736  ITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIM 795

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S++DRG  R +  + Y     K      +   +P R      R       N     LD
Sbjct: 796  NASAIDRGLFRSVFYRSYKDEESKRGFDQEEVFEKPTRDTCAGMR-------NAAYDKLD 848

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG------- 878
            +DG+ APG  +  ND  I K        +I  P  + D     A + Y+  D        
Sbjct: 849  EDGIIAPGLRVSGNDAIIGK--------TISLP--ENDDELEGAPKRYQKRDASTFLRAS 898

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET ++D+V L  +++G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  
Sbjct: 899  ETGIIDQVMLSLNQDGYKFCKIRVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCE 958

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PD+I+NPH  PSRMT+G +IE L GK   + G     + F +    A  V+ ISE L
Sbjct: 959  GLSPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND----AVNVQKISELL 1014

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++ +   G +++Y+G TG  L   +F+GP YYQ+LKHMV DK+H+R  GP  +LTRQP 
Sbjct: 1015 NEYNYHLRGNEVLYNGHTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPM 1074

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGR+R+GGLR GEMERDC IA+GA+  + ERL   SD +++ +C +CGL+   N +  + 
Sbjct: 1075 EGRSRDGGLRFGEMERDCQIAHGAAQFLHERLYTVSDAYKIHLCNLCGLIAIANLQTNSF 1134

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
             C  CKN   IS +++PYACKLL QEL SM+I PR+  A +
Sbjct: 1135 ECRGCKNKTQISQIEIPYACKLLFQELMSMSIAPRIMTASS 1175


>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
 gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
          Length = 1176

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1175 (37%), Positives = 667/1175 (56%), Gaps = 87/1175 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGTLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             DDDG+ APG  +  +DV I K   L E    + S T +   R  S        + ET +
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLR----NSETGI 905

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ P
Sbjct: 906  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAP 965

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G
Sbjct: 966  DIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYG 1021

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1022 YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1081

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  
Sbjct: 1082 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKG 1141

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            CKN   IS ++LPYA KLL QEL SMNI PRL ++
Sbjct: 1142 CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVS 1176


>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
          Length = 1168

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1198 (36%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 9    DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 60

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  +G     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 61   LQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 120

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     ++   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 121  DITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 180

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 181  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 240

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 241  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 300

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 301  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 356

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 357  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 416

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 417  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 469

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 470  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 529

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 530  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 587

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 588  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 647

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 648  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCA 702

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 703  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 762

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 763  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEV 822

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 823  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 875

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ R+     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 876  S----TNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 931

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 932  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 989

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 990  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1047

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1048 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1107

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1108 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1165


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1181 (38%), Positives = 658/1181 (55%), Gaps = 86/1181 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND----RIVSGIDPSIFLRFKD- 84
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +     R  S  +P     F + 
Sbjct: 64   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAET 123

Query: 85   --------VRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY---VQGSHTEKT 132
                    + + +P MT  DG +  L P   RL ++TY+AP+ V++ Y    +G   E+ 
Sbjct: 124  LHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHDCEEV 183

Query: 133  T--MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            T  ME   V IG++PIMLRS  C L+ + E +L  LGECP D GGYF+I G+EKVL+ QE
Sbjct: 184  TETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLIAQE 243

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM--EKGKMYLLLNQFVKK- 241
            ++S N V +   ++ N  A      S+  +     S   ++M    G       Q+++  
Sbjct: 244  KMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRAT 303

Query: 242  -------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
                   IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 304  LPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVA 361

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 362  LDYI-GK-RGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 419

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L + A DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 420  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKD 472

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 473  VNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 532

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 533  GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWG 592

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG  +G HR P      +R+LRR   +   V V  + +
Sbjct: 593  TENFEEISPAVI--PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIR 650

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV---RSFDDFLREGLIEYLDVN 644
             + + + +D GR  RPL I D     IK+ H++ L         + D + +G IEY+D  
Sbjct: 651  LKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTE 710

Query: 645  EENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
            EE   +I++   D          A  +T TH EI P  ILGV A +IP+P HNQSPRNTY
Sbjct: 711  EEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTY 770

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            Q AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  
Sbjct: 771  QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 830

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RP+R       M +
Sbjct: 831  YSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENT----MGM 886

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
             H S      LDDDGLA PG  +   DV I K SP+    +     GQ  +RY     + 
Sbjct: 887  RHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDA----QGQA-TRYSKRDHST 938

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
                 E+ +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED 
Sbjct: 939  SLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 998

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV++
Sbjct: 999  PWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDN 1053

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +L
Sbjct: 1054 ISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1113

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
            TRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N 
Sbjct: 1114 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANL 1173

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+
Sbjct: 1174 KKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1214


>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
 gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
          Length = 1174

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1198 (36%), Positives = 677/1198 (56%), Gaps = 96/1198 (8%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A        ++ ++  +    GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEA--------RWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  +G     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     ++   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K       G   + + +S+    +  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      + 
Sbjct: 769  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEV 828

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIM 856
              +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + 
Sbjct: 829  FEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            S    T+ R+     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+S
Sbjct: 882  S----TNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFAS 937

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 938  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 995

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKH
Sbjct: 996  IGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 1053

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1054 MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 1113

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++V VC +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1114 YQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171


>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
 gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
          Length = 1176

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1175 (37%), Positives = 667/1175 (56%), Gaps = 87/1175 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGQDPIETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             DDDG+ APG  +  +DV I K   L E    + S T +   R  S        + ET +
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLR----NSETGI 905

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ P
Sbjct: 906  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAP 965

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G
Sbjct: 966  DIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYG 1021

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1022 YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1081

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  
Sbjct: 1082 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKG 1141

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            CKN   IS ++LPYA KLL QEL SMNI PRL ++
Sbjct: 1142 CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVS 1176


>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
 gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
          Length = 1176

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1175 (37%), Positives = 667/1175 (56%), Gaps = 87/1175 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDAENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             DDDG+ APG  +  +DV I K   L E    + S T +   R  S        + ET +
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLR----NSETGI 905

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ P
Sbjct: 906  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAP 965

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G
Sbjct: 966  DIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYG 1021

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1022 YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1081

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  
Sbjct: 1082 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKG 1141

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            CKN   IS ++LPYA KLL QEL SMNI PRL ++
Sbjct: 1142 CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVS 1176


>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
          Length = 1173

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1202 (36%), Positives = 682/1202 (56%), Gaps = 86/1202 (7%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            M  EG  ++E   ++ + A  V        ++  +   +GLV+Q LDSF+ F+   +++I
Sbjct: 10   MPFEGDEEEEISSEQWQEACWV--------VISAYFDEKGLVRQQLDSFDEFIQMNVQRI 61

Query: 64   VRANDRI--------VSGI--DPSIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDM 111
            V  +  +         SG   +P+ F L+   + + +P+    DG    + P+  RL ++
Sbjct: 62   VEDSPPVELQSEVQHFSGDIENPTKFALKLDQIYLSKPTHWEKDGAPTPMMPNEARLRNL 121

Query: 112  TYAAPILVNIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGE 168
            TY++P+ V+I       G   +++  EK  V +G+IPIMLRS  C+L    + +L  L E
Sbjct: 122  TYSSPLYVDITKTVSRDGEDPKESKYEK--VFVGKIPIMLRSSYCMLSNMSDRDLTELNE 179

Query: 169  CPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI------NASVTSSTETVKSKT 222
            CPLDPGGYFII G+EKVL+ QE+++ N V + + K G         + + +S+    +  
Sbjct: 180  CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTECRSCLENSSRPTSTLW 239

Query: 223  VIQMEKG----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRY 269
            V  M +G          ++  +L    ++IPIM+V +A+G  SD ++++ +     DP  
Sbjct: 240  VNMMARGGSTKKSAMGQRIIAILPYIKQEIPIMIVFRALGFVSDHDILEHIIYDFEDPEM 299

Query: 270  SALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPV 329
              ++ PS++E     I  Q  AL ++  +  +   G     R   A  IL+   L +V +
Sbjct: 300  MEMVKPSLDEA--FVIQEQNVALNFIGARGAKP--GVTKEQRIKYAKEILQKEMLPHVGI 355

Query: 330  HNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMIS 389
             +     K +++  M+ R++ A L +  +DD+D++GNKRL+L+G L++ LF  LFK ++ 
Sbjct: 356  SDFCETKKAYFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFKNLLK 415

Query: 390  EVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVL 448
            EV+ T    ++K   +  F L   +   +IT GL  +L+TGN+ D K+    R G++QVL
Sbjct: 416  EVRLTAQKYINK---NGDFILDACVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVL 472

Query: 449  ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMT 508
             RL++  TL H+ R +    +  K++ PR L  +QWGM+CP +TPEG+A GLVKNLALM 
Sbjct: 473  NRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA 532

Query: 509  HVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMR 568
            +++      P++       +E+LE ++   + +     V  NG  +G HR P+     ++
Sbjct: 533  YISVGSLPEPILEFLEEWSMENLEEVAPSAIADATKIFV--NGAWVGIHRDPEQLMSTLK 590

Query: 569  KLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD--G 625
            KLRR   I    VS+  + + R + I +D GRVCRPL+I +     +K+ H+ +L D   
Sbjct: 591  KLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLVLKKKHIDQLKDTND 650

Query: 626  VRSFDDFLREGLIEYLDVNEENNALIALYEGDATP----DT-THIEIEPFTILGVIAGLI 680
              ++ D +  G++E +D  EE   ++A+   D       DT TH EI P  ILGV A +I
Sbjct: 651  NYAWSDLVAGGVVELIDAMEEETVMLAMMPEDLKAGGYCDTYTHCEIHPAMILGVCASII 710

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + +++
Sbjct: 711  PFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNE 770

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AG NA VA++SY+GY+ ED+++MN+S +DRG  R +  + Y        N+  + I +
Sbjct: 771  LPAGINAIVAILSYTGYNQEDSVIMNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEK 830

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R     ++   + HS  L   LD+DG+ +PG  +  +DV I K        +I  P  
Sbjct: 831  PTR-----DKCSGMRHS--LYDKLDEDGIISPGMRVSGDDVIIGK--------TISLPDV 875

Query: 861  QTDSRYRSARQTYKGPD-----GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
            + D    + + T +         ET +VD+V L  + +G+  +K  +R  R P++GDKF+
Sbjct: 876  EDDLEANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFA 935

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKG  G + +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK   + G  
Sbjct: 936  SRHGQKGTMGIMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEI 995

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
               + F +       V+ IS  L ++G+   G +++Y+G TG  L   +F+GP YYQ+LK
Sbjct: 996  GDATPFNDTV----NVQKISNLLSEYGYHLRGNEIMYNGHTGHKLTTQVFLGPTYYQRLK 1051

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMV DK+H+R  GP  M+ RQP EGRAR+GGLR GEMERDC I++GA+  + ERL   SD
Sbjct: 1052 HMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 1111

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
            P+ V VC  CGL+   N +     C  C+N   +S++++PYACKLL QEL SM+I PRL 
Sbjct: 1112 PYHVYVCNNCGLIVIANLRTNTFECKACRNKTQVSAIRIPYACKLLFQELMSMSIAPRLM 1171

Query: 1156 LA 1157
            ++
Sbjct: 1172 VS 1173


>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
          Length = 1195

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1170 (37%), Positives = 669/1170 (57%), Gaps = 74/1170 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR---------ANDRIVSGID-PSIF-L 80
            + ++  +   +GLV+Q LDSF+ FV   +++IV           N  + + ++ P+ F L
Sbjct: 33   WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGNDMENPAKFSL 92

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            +F  + + +P+    DG    + P+  RL ++TYA+P+ V+I  V              V
Sbjct: 93   KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSVVEKVYEKV 152

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             +G++P+MLRS  C+L    + +L  L ECPLDPGGYF+I G+EKVL+ QE+++ N V +
Sbjct: 153  FVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYV 212

Query: 200  DTDKKGNI------NASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKI 242
             + K G         + + +S+    +  V  + +G           ++  +L    ++I
Sbjct: 213  FSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEI 272

Query: 243  PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
            PIM+V +A+G  SD++++  +     DP    ++ PS++E     I  Q  AL ++  + 
Sbjct: 273  PIMIVFRALGFVSDRDILGHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR- 329

Query: 300  KRSTFGSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
                 G+ P   RE R   A  IL+   L +V V  +    K F++  M+ R++ A L +
Sbjct: 330  -----GAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 384

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415
              +DD+D++GNKRL+L+G L++ LF  LF+ ++ E++ T    ++K   +  F L   + 
Sbjct: 385  RELDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINK---NDDFALDVCVK 441

Query: 416  RDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
              +IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ R +    +  K++
Sbjct: 442  TSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLA 501

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  +QWGM+CP +TPEG+A GLVKNLALM +++      P++       +E+LE +
Sbjct: 502  KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEV 561

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYI 593
            S   + +     V  NG  +G HR P      ++KLRR   I    VS+  + + R + I
Sbjct: 562  SPSSISDATKIFV--NGSWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRI 619

Query: 594  ASDGGRVCRPLVIADKGISRIKEHHMKELLD----GVRSFDDFLREGLIEYLDVNEENNA 649
             +D GRVCRPL+I +     +K+ H+ +L D       S+ D +  G++E +D  EE  +
Sbjct: 620  YTDAGRVCRPLLIVEDQKLALKKTHIDQLKDVDEANKFSWSDLVGGGVVELIDSMEEETS 679

Query: 650  LIALYEGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            +IA+   D       DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG 
Sbjct: 680  MIAMMPEDLRTGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 739

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
               N   RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++SYSGY+ ED+++
Sbjct: 740  YTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVI 799

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            MN S++DRG  R +  + Y        N+  + I +P R     E+   + H+  L   L
Sbjct: 800  MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTR-----EKCSGMRHA--LYDKL 852

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D+DG+ +PG  +  +DV I K   L      +  TG+   + R A    +    ET +VD
Sbjct: 853  DEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPK-RDASTFLRS--SETGIVD 909

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V L  + +G+  +K  +R  R P++GDKF+SRHGQKG  G + +QED PF+  G+ PD+
Sbjct: 910  QVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDI 969

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMT+G +IE L GK   + G     + F +       V+ IS  L ++G+ 
Sbjct: 970  IINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV----NVQKISGLLCEYGYH 1025

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++Y+G TG  L   IF GP YYQ+LKHMV DK+H+R  GP  M+ RQP EGRAR+
Sbjct: 1026 LRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARD 1085

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC I++GA+  + ERL   SDP+ V VC  CGL+   N +  +  C  C+
Sbjct: 1086 GGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACR 1145

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N   +S++++PYACKLL QEL SM+I PRL
Sbjct: 1146 NKTQVSAVRIPYACKLLFQELMSMSIAPRL 1175


>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
            nigrotuberculatum]
          Length = 1177

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1173 (37%), Positives = 666/1173 (56%), Gaps = 81/1173 (6%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGID-PSIF-LRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV  + +I            ID P+ + ++F
Sbjct: 30   VINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAESQHTHGEIDTPTKYQIKF 89

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E    + +   
Sbjct: 90   EQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIKDGEEPVVTQHSKSF 149

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L+G ++ +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 150  IGKIPIMLRSTYCLLFGLNDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 209

Query: 201  TDKKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIP 243
            + K G       I + +  S+    +  V  M +G           ++  +L    ++IP
Sbjct: 210  SMKDGKYAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIP 269

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IM+V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  
Sbjct: 270  IMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGA 327

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            R   G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD
Sbjct: 328  RP--GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDD 385

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVR 416
            +D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  
Sbjct: 386  RDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLDLAIKT 438

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
              IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ 
Sbjct: 439  KLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAK 498

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++
Sbjct: 499  PRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 558

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIA 594
               + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I 
Sbjct: 559  PSAIVDATKIFV--NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIY 616

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNA 649
            +D GR+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   
Sbjct: 617  TDAGRICRPLLIVENGKLLLKKRHIDSLKE--RDYNNYGWQVLVSNGVVEYIDTLEEETT 674

Query: 650  LIALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
            +IA+   D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 675  MIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 734

Query: 702  MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
            MG    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 794

Query: 762  AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLL 821
            ++++N S+++RGF R +  + Y     K      +   +P+R      R       N + 
Sbjct: 795  SVILNASAVERGFFRSVFFRSYKDSESKRIGDQEEVFEKPNRQSCQGMR-------NAIY 847

Query: 822  LILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETC 881
              LDDDG+ +PG  +  +DV I K   L      +  T +  S+ R      +  + ET 
Sbjct: 848  DKLDDDGIISPGLRVSGDDVIIGKTMTLPDNEDELEGTTKKYSK-RDCSTFLR--NSETG 904

Query: 882  VVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 941
            ++D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI 
Sbjct: 905  LIDQVLLTLNSEGYKFCKIRVRSERIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGIT 964

Query: 942  PDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKH 1001
            PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++
Sbjct: 965  PDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEY 1020

Query: 1002 GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGR 1061
            G+   G +++Y+G +G  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGR
Sbjct: 1021 GYQLRGNEVMYNGFSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 1080

Query: 1062 ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS 1121
            AR+GGLR GEMERDC IA+GA+  + ERL   SDP+ + +C  CGL+   N +     C 
Sbjct: 1081 ARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECK 1140

Query: 1122 TCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             CKN   IS +KLPYA KLL QEL SMNI PRL
Sbjct: 1141 GCKNKTQISQVKLPYAAKLLFQELMSMNIAPRL 1173


>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1184 (39%), Positives = 662/1184 (55%), Gaps = 91/1184 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGIDP----S 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV        R   +   G  P    +
Sbjct: 33   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFAET 92

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 93   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 152

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C LY   E +L  LGECPLD GGYFII G+EKVL+ QE
Sbjct: 153  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 212

Query: 191  QLSKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--L 234
            ++S N V +   ++ N  A V              ST  V+  S+T  +      Y+   
Sbjct: 213  KMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 272

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKA 291
            L     +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 273  LPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEA--FVIQNQQVA 330

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + ST G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 331  LDYI-GK-RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 388

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L + A DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 389  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKD 441

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R+    
Sbjct: 442  VNLQFXIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPI 501

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 502  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 561

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NGL +G HR P      +R+LRR   +   V V  + +
Sbjct: 562  TENFEEISPAVI--PQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIR 619

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVRSFDDFLREGLIEYL 641
             + + I +D GR  RPL I +K    IK+  ++ L       DG   + + + +G IEY+
Sbjct: 620  LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDG--GWHELVAKGFIEYI 677

Query: 642  DVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPR 690
            D  EE   +I++   D          A  DT TH EI P  ILGV A +IP+P HNQSPR
Sbjct: 678  DTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 737

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA
Sbjct: 738  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 797

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            +  YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR+      
Sbjct: 798  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT---- 853

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
            M + H S      LDDDGLA PG      DV I K +P+    S     GQ  +RY    
Sbjct: 854  MGMRHGS---YDKLDDDGLAPPGTRCSGEDVIIGKTTPI----SPDDAQGQA-ARYTKRD 905

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             +      ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    Q
Sbjct: 906  HSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 965

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      T
Sbjct: 966  EDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----T 1020

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V++IS+ L K G+   G + +Y+G TG  L + IF+GP YYQ+LKHMV DK+H+RG GP 
Sbjct: 1021 VDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1080

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + + VC  CGL+  
Sbjct: 1081 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAI 1140

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N K  +  C  CKN  +I  + +PYACKLL QEL SM I PR+
Sbjct: 1141 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRM 1184


>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
 gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
 gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
 gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
          Length = 1176

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1172 (37%), Positives = 665/1172 (56%), Gaps = 87/1172 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             DDDG+ APG  +  +DV I K   L E    + S T +   R  S        + ET +
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLR----NSETGI 905

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ P
Sbjct: 906  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAP 965

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G
Sbjct: 966  DIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYG 1021

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1022 YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1081

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  
Sbjct: 1082 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKG 1141

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1142 CKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173


>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
 gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide
 gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1182 (39%), Positives = 661/1182 (55%), Gaps = 87/1182 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 84   IYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C LY   E +L  LGECPLD GGYFII G+EKVL+ QE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 203

Query: 191  QLSKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--L 234
            ++S N V +   ++ N  A V              ST  V+  S+T  +      Y+   
Sbjct: 204  KMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
            L     +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA--FVIQNQQVA 321

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 322  LDYI-GK-RGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
             L + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD           
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKD 432

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG  +G HR P      +R+LRR   +   V V  + +
Sbjct: 553  TENFEEISPAVI--PQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIR 610

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR----SFDDFLREGLIEYLDV 643
             + + I +D GR  RPL I +K    IK+  ++ L          + D + +G IEY+D 
Sbjct: 611  LKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDT 670

Query: 644  NEENNALIA----------LYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I+          L  GDA  DT TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 671  EEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 730

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 731  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 790

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR    A  M 
Sbjct: 791  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ASTMG 846

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDGLA PG  +   DV I K +P+    S     GQ  SRY     +
Sbjct: 847  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDDAQGQA-SRYTRKDHS 898

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 899  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 958

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 959  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 1013

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1014 NISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1073

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N
Sbjct: 1074 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN 1133

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+
Sbjct: 1134 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1175


>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
          Length = 1175

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1167 (38%), Positives = 659/1167 (56%), Gaps = 77/1167 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKDRRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+  + R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I + G   +K+ H   +KE       +   +  G++EY+D  EE   +IA+  
Sbjct: 620  RICRPLLIVEGGTLLLKKRHVDMLKEKEYNNYGWQVLVASGVVEYIDTLEEETVMIAMSP 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  EDLRVDKEYAYCQTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+++MN 
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNA 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N L   LDDD
Sbjct: 800  SAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLDDD 852

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ +PG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 853  GIISPGIRVSGDDVVIGKTITLPDNDDELEGTTKRFTK-RDASTFLR--NSETGIVDQVM 909

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIIN 969

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 970  PHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLRG 1025

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1026 NEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN  
Sbjct: 1086 RFGEMERDCQIAHGAAQFLRERLFEVSDPYAIHVCNFCGLIAIANLRNNTFECKGCKNKT 1145

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS ++LPYA KLL QEL SM+I PRL
Sbjct: 1146 QISQVRLPYAAKLLFQELMSMSIAPRL 1172


>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
          Length = 1174

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1165 (37%), Positives = 656/1165 (56%), Gaps = 73/1165 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 32   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 91

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 92   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 151

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K 
Sbjct: 152  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKD 211

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 212  GKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIV 271

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  +   
Sbjct: 272  FRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGAKP-- 327

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 328  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLE 424
            GNKRL+L+G L++ LF  LFK ++ EV+      + K      F+L   I    IT GL 
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDK---GKDFNLDLAIKTKMITDGLR 444

Query: 425  RTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
             +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L  + 
Sbjct: 445  YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 504

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   + +  
Sbjct: 505  WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 564

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCR 602
               V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D GR+CR
Sbjct: 565  KIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICR 622

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIALYEGD 657
            PL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+   D
Sbjct: 623  PLLIVENGNLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDD 680

Query: 658  ATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
               +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 681  LRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 740

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N S+
Sbjct: 741  HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 800

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            ++RGF R +  + Y     K      ++  +P R      R       N L   LDDDG+
Sbjct: 801  VERGFFRSVFYRSYKDAESKRLGDQEEQFEKPTRQTCQGMR-------NALYDKLDDDGI 853

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             +PG  +  +DV I K   L      +  T +   RY     +    + ET +VD+V L 
Sbjct: 854  ISPGIRVSGDDVVIGKTITLPENDDELDGTTK---RYTKRDASTFLRNSETGIVDQVMLT 910

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
             +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+NPH
Sbjct: 911  LNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPH 970

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   G +
Sbjct: 971  AIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLRGNE 1026

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGLR 
Sbjct: 1027 VMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 1086

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN   I
Sbjct: 1087 GEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQI 1146

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRL 1154
            S ++LPYA KLL QEL SMNI PRL
Sbjct: 1147 SQVRLPYAAKLLFQELMSMNIAPRL 1171


>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
          Length = 1176

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1178 (37%), Positives = 665/1178 (56%), Gaps = 99/1178 (8%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVR--------ANDRIVSGI--DPSIF-LRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV         A  +  SG    P+ + L+F  + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTSGDIETPTRYVLKFDQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +     M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAYKSEIRSCLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++LLF  LFK+++ EV    QK +D       R   F+L   I    
Sbjct: 388  HYGNKRLDLAGPLMALLFRGLFKSLVKEVRMYAQKFID-------RGKDFNLELAIKTKI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLTATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   ++++H+  L D  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLRKNHVDMLKD--RDYNNYGWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMTPYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N  VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINTIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      ++  +P+R      R       N L   
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSESKKIGDQEEQFEKPNRQTCQGMR-------NALYDK 849

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG----- 878
            LDDDG+ APG  +  +DV I K        +I  P  +TD       + Y   DG     
Sbjct: 850  LDDDGIIAPGLRVSGDDVVIGK--------TITLP--ETDDDLDGTTKRYTKRDGSTFLR 899

Query: 879  --ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+
Sbjct: 900  NSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 959

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              G+ PD+I+NPH  PSRMT+G +IE + GK G + G     + F +    A  V+ IS 
Sbjct: 960  CEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFND----AVNVQKIST 1015

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQ
Sbjct: 1016 FLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQ 1075

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            P EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +  
Sbjct: 1076 PMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNN 1135

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               C  CKN   IS +KLPYA KLL QEL +MNI PRL
Sbjct: 1136 TFECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRL 1173


>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
 gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
          Length = 1117

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1145 (37%), Positives = 660/1145 (57%), Gaps = 58/1145 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI---FLRFKDVR 86
            D + ++  + + +GLV+QHLDS+N F+  G++++V      V GI P I    ++F  +R
Sbjct: 13   DLWIVMESYWQEKGLVRQHLDSYNAFIERGLQEVVDE----VGGIKPDIPDFEVKFGKIR 68

Query: 87   IGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRI 144
            +G+P      G  + L P   R+ ++TY+AP+ +  I  ++G   +       +V IG +
Sbjct: 69   VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGVEQDPV-----EVRIGEL 123

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIML+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E ++ NR +++ D++
Sbjct: 124  PIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDER 183

Query: 205  GN-INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
                 A V S     ++   ++ +K G +Y+ +    + +  + VM+A+G+E D+++V  
Sbjct: 184  QERYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVDA 243

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
            VG DP    +L  ++E+ +  DI TQ++ALEY+ GK+     G     R  RA  ++ + 
Sbjct: 244  VGNDPEVQQILFDNLEDAS--DITTQQEALEYI-GKL--VAPGQAREYRLKRAEYVIDNN 298

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L ++ V+  +   K +Y+ +M  +++E  L K   DDKD+  NKRL L+G L+  LF  
Sbjct: 299  LLPHMGVNPEDRIRKAYYLGMMALKVIELSLGKRGEDDKDHYANKRLRLAGDLLKDLFRV 358

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRF 437
             F  ++ ++Q  +     +      F      +R+SI     T  +E  L+TG +     
Sbjct: 359  AFNQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAW----- 413

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
               R G++Q+L R +++ T+ H+ RV+   ++ +     R L  + WG +CP +TPEG  
Sbjct: 414  PGGRTGVSQLLDRTNYVSTMSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPN 473

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLALM  +TT   E  +      LG+  +E+       +P  + V  NG+++G  
Sbjct: 474  CGLVKNLALMAQITTAVPEEEVREYLMSLGIVPIEVRR----PSPELWRVYLNGVLIGTV 529

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
               K   + +R  RR+GKI + ++V   E  + VY+ SD GRV RPL+I + G  ++ + 
Sbjct: 530  EDGKALVEKIRSDRRSGKISDIINVAYYEDVKEVYVNSDDGRVRRPLIIVENGKPKLTKE 589

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            H++ + +G   + D ++ G+IEYLD  EE NA +A++  + T + TH+E+ P  ILG+ A
Sbjct: 590  HVQAIKEGRLKWSDLIKMGVIEYLDAEEEENAYVAMWPWEVTKEHTHLELMPAAILGLPA 649

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             LIPYP HN +PRNTY   M KQ++G    N   R+D+  +LL YPQ PL+ +R ++ VG
Sbjct: 650  SLIPYPEHNAAPRNTYGAGMAKQSLGIGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVG 709

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            Y+   AGQN  VAV++Y GY++EDAI++NK+S++RG  R    + Y A  +KY    +D+
Sbjct: 710  YEDRPAGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDK 769

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGS 854
               P  T  G    +   H       LD+DGL  P   ++  DV I + SP   LE RG 
Sbjct: 770  FEIPSPTVRGYRGEKYYRH-------LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGL 822

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                  +      + R + KG      +VD+V +    +G   +K  +R  R PE+GDKF
Sbjct: 823  GAVSLQERRETSVAVRPSEKG------IVDKVIITETGDGTKLVKVTVRDLRIPEIGDKF 876

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG+++E +GGK     GR
Sbjct: 877  ASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGR 936

Query: 975  FHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
               G+AF GEP       E + + L + GF + G++++Y GITG   +A IF+G IYYQ+
Sbjct: 937  RVDGTAFIGEPE------EKLRKELEELGFKHTGREIMYDGITGKRFEADIFIGVIYYQR 990

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ERL+  
Sbjct: 991  LHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEE 1050

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD  EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M I P+
Sbjct: 1051 SDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMCIRPK 1110

Query: 1154 LKLAE 1158
            L L E
Sbjct: 1111 LNLTE 1115


>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1193

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1207 (36%), Positives = 671/1207 (55%), Gaps = 111/1207 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  +V         +     + F
Sbjct: 11   DCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVLQHVGGDGDVTKRYIIDF 70

Query: 83   KDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN------IEYVQGSHTEKTTME 135
              + + +P+MT  DG S+ + P   R+ ++TYAAP+ ++      I   Q  +  +T   
Sbjct: 71   GQIYLSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQIARPQDPNDPRTNPN 130

Query: 136  ------------KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTE 183
                        K  V +G++P+MLRS  C+L+   E E+  L EC  D GGYF+I G+E
Sbjct: 131  DLFVDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNECSFDMGGYFVINGSE 190

Query: 184  KVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTET---VKSKTVIQM-----EKGKMY 232
            KVL+ QE+++ N V + +       + +A + S  E      S   I+M     E+G   
Sbjct: 191  KVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPLFIKMMRPSAERGTA- 249

Query: 233  LLLNQFVK--------KIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                QF++        +IP+++V +A+G  SD++V++ +     D     LL PSIEE  
Sbjct: 250  ---GQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRNDYEMLELLKPSIEEA- 305

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  Q+ AL+++ GK + +T G+    R   A  IL+   L +V         K ++ 
Sbjct: 306  -FVIQDQDVALDFI-GK-RGTTVGATRERRIKYASEILQKELLPHVGTAYKTETRKSYFF 362

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++ A L +  +DD+D+ G KR++L+G L++ LF  LF+ +  +V K     L K
Sbjct: 363  GYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFRKLTRDVAK----YLQK 418

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
               SSR F+LS  +  ++IT GL+ +L+TGN+ D K+    R G++QVL R +F  TL H
Sbjct: 419  CIESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSH 478

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM++++      PL
Sbjct: 479  LRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSANPL 538

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            I       +E+LE LS   +   +S  V  NG+ +G HR P      ++++RR+  I   
Sbjct: 539  IMFLEEWAMENLEELSATSI--ADSTKVFVNGVWIGIHRDPGELITSLKQMRRSVDISPE 596

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSF--DDFLREGL 637
            VS+  + +++ + + +D GR CRPL + +    R+    +  L D    F   D + EG+
Sbjct: 597  VSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTRDDVGRLQDPDDDFGWQDLIAEGI 656

Query: 638  IEYLDVNEENNALIALYEGDATPD------------------------------TTHIEI 667
            +EY+D +EE  A+I +   D +                                 TH EI
Sbjct: 657  VEYVDADEEETAMICMTPEDLSESRMASQYGAPLQQTRSLASRVKSQTGTYAHTWTHCEI 716

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L  +L YPQ+PL
Sbjct: 717  HPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQMRMDTLANILYYPQKPL 776

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y    
Sbjct: 777  TTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDAE 836

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +K      +   +P R       +++ H +      L++DGL APG  +  +D+ I K +
Sbjct: 837  KKAGMMFMEEFEKPTREST----LRLKHGT---YEKLEEDGLIAPGTRVSGDDIIIGKTA 889

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P+      +   GQ  + +     +      ET +VD+V L ++++G   +K  +R TR 
Sbjct: 890  PIPAESEEL---GQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRV 946

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G   +QEDFPFS  GI PDLI+NPH  PSRMT+G MIE L GK
Sbjct: 947  PQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLGK 1006

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G     + F +      TVE+IS+ L   G+   G +++Y+G TG  L A +F+G
Sbjct: 1007 VSTLTGNEGDATPFTDV-----TVEAISQALQAQGYQQRGFEVMYNGFTGRKLNAQVFLG 1061

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + 
Sbjct: 1062 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLK 1121

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERL  +SD + V VC +CGL+   N K     C +CKN   IS + +PYACKLL QEL +
Sbjct: 1122 ERLFDASDAYRVHVCDICGLMAIANLKKNNFECRSCKNKTRISQIHIPYACKLLFQELMA 1181

Query: 1148 MNIVPRL 1154
            MNI PR+
Sbjct: 1182 MNIAPRM 1188


>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
 gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
          Length = 1171

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1168 (36%), Positives = 669/1168 (57%), Gaps = 67/1168 (5%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGI--DPSIF-L 80
            + ++  +   +GLV+Q LDSF+ F+   +++IV  +  +         SG   +P  F L
Sbjct: 29   WVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVENPIKFAL 88

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ---GSHTEKTTMEK 136
            +F  + + +P+    DG    + P+  RL ++TY++P+ ++I       G   ++T  EK
Sbjct: 89   KFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRIGEEPKETKYEK 148

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
              V +G+IPIMLRS  C+L    + +L+ L ECPLDPGGYF+I G+EKVL+ QE+++ N 
Sbjct: 149  --VFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQEKMATNT 206

Query: 197  VIIDTDKKGNIN------ASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFV 239
            V + + K G         + + +S+    +  V  + +G           K+  +L    
Sbjct: 207  VYVFSMKDGKYTYKTECRSCLENSSRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILPYIK 266

Query: 240  KKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
            ++IP+M+V +A+G  SD ++++ +     DP    ++ PS++E     I  Q  AL ++ 
Sbjct: 267  QEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIG 324

Query: 297  GKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
             +  +   G     R   A  IL+   L +V + +     K +++  M+ R++ A L + 
Sbjct: 325  ARGAKP--GVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGRR 382

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
             +DD+D++GNKRL+L+G L++ LF  LF+ ++ EV+ T    ++K   +  F L   +  
Sbjct: 383  ELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINK---NGDFMLDLCVKT 439

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
              IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ R +    +  K++ 
Sbjct: 440  PLITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRCNSPIGREGKLAK 499

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  +QWGM+CP +TPEG+A GLVKNLALM +++      P++       +E+LE ++
Sbjct: 500  PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVA 559

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIA 594
               + +     V  NG  +G HR P+     ++KLRR   I    VS+  + + R + I 
Sbjct: 560  PTAIADATKIFV--NGAWVGIHRDPEQLMTTLKKLRREMDIIVSEVSMVRDIRDREIRIY 617

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            +D GRVCRPL+I +     +K  H+ +L D   ++ + +  G++E +D  EE   ++A+ 
Sbjct: 618  TDAGRVCRPLLIVENQKLALKRKHIDQLKDNSYTWSELVAGGVVELIDAMEEETVMLAMM 677

Query: 655  EGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
              D       DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 678  PEDLKAGGYCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNF 737

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++SY+GY+ ED+I+MN+S 
Sbjct: 738  HVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSG 797

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            +DRG  R +  + Y        N+  + I +P R     ++   + HS  L   LD+DG+
Sbjct: 798  IDRGLFRSVFYRSYRDQEANLDNANEELIEKPTR-----DKCSGMRHS--LYDKLDEDGI 850

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             +PG  +  +DV I K   L      +  T +   RY     +      ET +VD+V L 
Sbjct: 851  ISPGMRVSGDDVIIGKTISLPDTEDDLDATIK---RYTKKDASTFLRSSETGIVDQVMLT 907

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
             + +G+  +K  +R  R P++GDKF+SRHGQKG  G + +QED PF+  GI PD+I+NPH
Sbjct: 908  LNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPH 967

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMT+G +IE L GK   + G     + F +       V+ IS  L ++G+   G +
Sbjct: 968  AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV----NVQKISNLLQEYGYHLRGNE 1023

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++Y+G TG  L   +F+GP YYQ+LKHMV DK+H+R  GP  M+ RQP EGRAR+GGLR 
Sbjct: 1024 IMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRF 1083

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +  +  C  C+N   +
Sbjct: 1084 GEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVVANLRTNSFECKACRNKTQV 1143

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            S+ ++PYACKLL QEL SM+I PRL ++
Sbjct: 1144 SAFRIPYACKLLFQELMSMSIAPRLMVS 1171


>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
 gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
          Length = 1182

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1174 (37%), Positives = 663/1174 (56%), Gaps = 76/1174 (6%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSIFLRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV  +  I            + I     L+F
Sbjct: 33   VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDLQAESQHMTSDTEIPARFVLKF 92

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ-GSHTEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP  V+I   +   + E      + + 
Sbjct: 93   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPFYVDITKTRIKDNEEPQVTTHSKMF 152

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII- 199
            IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 153  IGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 212

Query: 200  -DTDKKGNINASVTS----STETVKSKTVIQMEKG-----------KMYLLLNQFVKKIP 243
               D K +  A + S    S+    +  V  + KG           ++   L    ++IP
Sbjct: 213  SKKDSKYSYTAEIRSCLEHSSRPTSTMWVSMLAKGSSGGRRSAIGQRIVGSLPYIKQEIP 272

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IM+V +A+G  +D+++++ +     D     ++ PS++E     I  Q  AL ++  +  
Sbjct: 273  IMIVFRALGFVADRDILEHIIYDFEDQEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGA 330

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            R   G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD
Sbjct: 331  RP--GVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDD 388

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVR 416
            +D+ GNKRL+L+G L++ LF  LF+ ++ EV    QK +D       R   F++   +  
Sbjct: 389  RDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFID-------RGKDFNIELALKP 441

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
              IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K++ 
Sbjct: 442  KVITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAK 501

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++
Sbjct: 502  PRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFMEEWTMENLEEIT 561

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIA 594
               ++      V  NG  +G HR P      +RKLRR   I    VS+  + ++R + I 
Sbjct: 562  PSAINTSTKIFV--NGCWVGIHRDPDQLMSTLRKLRRRMDIIVSEVSMVRDFREREIRIY 619

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALI 651
            SD GR+CRPL+I +     +K++H+ +L +      S+ + +  G++EY+DVNEE   ++
Sbjct: 620  SDAGRICRPLLIVENQKLLLKKNHIDQLKEREYNEYSWQELVANGIVEYIDVNEEETVMV 679

Query: 652  ALY------EGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            A+       +G A   T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG 
Sbjct: 680  AMTPDELVEKGQAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 739

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
               N   RMD+L ++L YPQ+PL+TTR++E + + +L AG NA VA+ SY+GY+ ED+++
Sbjct: 740  YITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVI 799

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            MN S++DRG  R +  + Y     K      +   +P R      R       N     L
Sbjct: 800  MNASAIDRGLYRSVFYRSYRDQESKKGLDQEETFEKPTRDAVQGMR-------NASYDKL 852

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D+DGL APG  +  +DV + K   L      +  T +  S+  ++  T+  P  ET +VD
Sbjct: 853  DEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELEGTARKYSKKDAS--TFLRP-SETGIVD 909

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+
Sbjct: 910  QVMVTINQEGFKFTKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDV 969

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS+ L  +G+ 
Sbjct: 970  IINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISQLLNDYGYH 1025

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++YSG TG  L   +F+GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+
Sbjct: 1026 LRGNEVLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPMEGRSRD 1085

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC+IA+G++  + ERL   SDP+   VC +CGL+   N +     C  CK
Sbjct: 1086 GGLRFGEMERDCMIAHGSAQFLNERLFEVSDPYSCHVCNLCGLIAIANLRNNTFECRGCK 1145

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            N   +S +++PYA KLL QEL SM+I PR+ + +
Sbjct: 1146 NKTQVSRIRMPYAAKLLFQELMSMSIAPRMMVCD 1179


>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
 gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
          Length = 1176

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1171 (37%), Positives = 665/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P+R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPNRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
             DDDG+ APG  +  +DV I K   L      +    +  S+ R A    +  + ET +V
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSK-RDASTFLR--NSETGIV 906

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD
Sbjct: 907  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPD 966

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G+
Sbjct: 967  IIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYGY 1022

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1023 HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1082

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  C
Sbjct: 1083 DGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGC 1142

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1143 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173


>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
 gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
          Length = 1176

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1171 (37%), Positives = 665/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
             DDDG+ APG  +  +DV I K   L      +    +  S+ R A    +  + ET +V
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSK-RDASTFLR--NSETGIV 906

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD
Sbjct: 907  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPD 966

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G+
Sbjct: 967  IIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYGY 1022

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1023 HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1082

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C +C
Sbjct: 1083 DGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKSC 1142

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1143 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173


>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
 gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
          Length = 1175

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1178 (37%), Positives = 666/1178 (56%), Gaps = 99/1178 (8%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVR--------ANDRIVSGI--DPSIFL-RFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV         A  +  SG   +P+ +L +F  + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGEIENPTRYLLKFDQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 93   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKLVEGQDPVETQHQK--TFIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 151  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 210

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKI 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 440  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   ++++H+  L D  R ++++     +  G++EY+D  EE   +I
Sbjct: 618  AGRICRPLLIVENGSLLLRKNHIDMLKD--RDYNNYGWQVLVASGVVEYIDTLEEETVMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMTPYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 736  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      ++  +P+R      R       N L   
Sbjct: 796  ILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMR-------NALYDK 848

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG----- 878
            LD+DG+ APG  +  +DV I K        +I  P  +TD       + Y   DG     
Sbjct: 849  LDEDGIIAPGLRVSGDDVVIGK--------TITLP--ETDDDLDGTTKRYTKRDGSTFLR 898

Query: 879  --ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+
Sbjct: 899  NSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 958

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              GI PD+I+NPH  PSRMT+G +IE + GK G + G     + F +    A  V+ IS 
Sbjct: 959  CEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFND----AVNVQKIST 1014

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQ
Sbjct: 1015 FLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQ 1074

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            P EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +  
Sbjct: 1075 PMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNN 1134

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               C  CKN   IS +KLPYA KLL QEL +MNI PRL
Sbjct: 1135 TFECKGCKNKTQISQVKLPYAAKLLFQELMAMNIAPRL 1172


>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
 gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
          Length = 1123

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1145 (37%), Positives = 650/1145 (56%), Gaps = 47/1145 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            SV D++ ++  + K RGLV+QHLDSFN F+   +++I+     I + I P + ++   +R
Sbjct: 3    SVDDRWAIVESYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIETEI-PGLKIKLGKIR 61

Query: 87   IGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            +G+P +   D    ++ P   RL ++TYAAPI + +  V+ +       E  +V IG +P
Sbjct: 62   VGKPRVREADRGDREITPMEARLRNLTYAAPIYLTMIPVENN----IEGEPTEVYIGDLP 117

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S           +L  +GE P DPGGYFII GTEKV++ QE L+ NRV++D  K G
Sbjct: 118  IMLKSVADPTADLPAEKLVEIGEDPKDPGGYFIINGTEKVIVTQEDLATNRVLVDEGKSG 177

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             N+   A + SST   +    I+ +    +++       +IP  ++M+A+G+E+D+++  
Sbjct: 178  SNVTHTAKIISSTAGYRVPITIERLRDSTIHVSFPAVPGRIPFAILMRALGLETDRDITF 237

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  D      LLPS+E+ ++  I TQE AL+++  +V     G    +R  RA  +L  
Sbjct: 238  AVSFDEEIQNELLPSLEQASS--ITTQEDALDFIGNRV---AIGQKRENRIERAEQVLDK 292

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++ +   + + K +Y+   + +++E  L +   DDKD+  NKRL+L+G L S LF 
Sbjct: 293  YFLPHLGLTPADRKKKAYYLGYAVSKLIELQLGRREPDDKDHYANKRLKLAGDLFSSLFR 352

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  R  L+  +  D IT  +   ++TGN+        R
Sbjct: 353  VAFKAFVKDLVYQLE---KSKVRGRRLTLNALVRPDIITERIRHAMATGNW-----VGGR 404

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 405  TGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 464

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL--SGEELHNPNSFL----VIFNGLILG 555
            KNLAL+  ++    +  +  + Y LGV  LE L    +E  +P+S+     VI NG ++G
Sbjct: 465  KNLALLAQISVGINDKIVEKMLYELGVIPLEELIRKIDEGEDPSSYTNWSKVILNGRLVG 524

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
             +   +  A+ MR+ RRAG+I + ++V   V +    VY+ SD GRV RPL++   G   
Sbjct: 525  YYPNGEELANKMREKRRAGEISDEINVAHIVTDTYDEVYVNSDSGRVRRPLIVVKDGKPL 584

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            + E  ++ L  G  +FD  ++EG IE+LD  EE NA IAL     TP+ TH+EI    IL
Sbjct: 585  VTEEDIQRLKKGEITFDTLVKEGKIEFLDAEEEENAYIALEPSKVTPEHTHLEIWTPAIL 644

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R DS  + L YPQ+PL+ TR +
Sbjct: 645  GITASIIPYPEHNQSPRNTYQSAMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRAL 704

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            +++GY+   AG+NA +AVMS++GY++EDAI+MNKSS++RG  R    + Y+A   KY   
Sbjct: 705  DIIGYNNRPAGENAILAVMSFTGYNMEDAIIMNKSSVERGMFRSTFFRLYSAEEIKYPGG 764

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
              D+I  P+   PG    +   +       LD++G+  P   +K  DV I K SP     
Sbjct: 765  QEDKIQLPE---PGVRGYKGSDYYK----SLDENGIVPPEVEVKGGDVLIGKVSPPRFLQ 817

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
                 + +   R  S    +    GE  +VD V +     G+  +K  +R  R PELGDK
Sbjct: 818  EFKELSPEQAKRDTSVITRH----GEKGIVDLVLITETSEGNKLVKVRVRDLRIPELGDK 873

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F++RHGQKGV G ++ Q D P++ +GI PD+I+NPH  PSRMT+G+++E L GK     G
Sbjct: 874  FATRHGQKGVIGMLIPQADMPYTVKGIVPDIILNPHSLPSRMTLGQIMEALAGKYAALSG 933

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
            +    + F     +   +E + + L+  GF  +G +++Y G TG  ++  I  G +YYQK
Sbjct: 934  KTVDATPF-----YNTPIEELQKKLLDFGFLPDGTEVVYDGRTGQKVKGRILYGVVYYQK 988

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DKMH R  GP  +LTRQPTEGRAR GGLR GEMERDCLI YGA+M+I +RL+ +
Sbjct: 989  LHHMVADKMHGRARGPIQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMVIKDRLLDN 1048

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD   V VC  CG +G+Y+      +C    +  N+  + + YA KLL+QEL SM I PR
Sbjct: 1049 SDKTTVYVCEQCGYIGWYDKNKNKYVCPIHGDKANLYPVTISYAFKLLLQELMSMVISPR 1108

Query: 1154 LKLAE 1158
            L L +
Sbjct: 1109 LILGD 1113


>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
 gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
          Length = 1175

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1172 (37%), Positives = 664/1172 (56%), Gaps = 87/1172 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 93   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 151  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 210

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 440  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 618  AGRICRPLLIVENGTLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 736  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 796  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 849

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             DDDG+ APG  +  +DV I K   L E    + S T +   R  S        + ET +
Sbjct: 850  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFAKRDASTFLR----NSETGI 904

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ P
Sbjct: 905  VDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAP 964

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G
Sbjct: 965  DIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYG 1020

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRA
Sbjct: 1021 YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1080

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  
Sbjct: 1081 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKG 1140

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1141 CKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
 gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
          Length = 1130

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1153 (37%), Positives = 659/1153 (57%), Gaps = 64/1153 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI---DPSIFLRFKDVR 86
            D+++++  ++   GLV+QHLDSFN F+  G+++IV      V GI      + ++F  + 
Sbjct: 14   DRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDE----VGGIKVESQGVEIKFGKIE 69

Query: 87   IGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIE-YVQGSHTEKTTMEKNDVVIGRI 144
            +GQP+    DG    L P + RL ++TYAAP+ + +  YV G   E+ T     V IG +
Sbjct: 70   VGQPTFREADGSDLALTPMIARLRNITYAAPLYLTMTLYVDGE--ERRT---ESVYIGSL 124

Query: 145  PIMLRSCRCVLYG-KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            PIM++S +CVLYG K E E+ + GE P DPGGYFI+ G+E+V+++QE LS NRV++D   
Sbjct: 125  PIMVKSKKCVLYGLKSEDEIVKYGEDPYDPGGYFIVNGSERVIVMQEDLSVNRVLVDY-- 182

Query: 204  KGNINASVTSSTETVKSK-------TVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
             G  + SVT + +            TV + + G +Y        KIP++V+M+A+G+++D
Sbjct: 183  -GGASGSVTHTAKVFSVAAGQRSPLTVERTKDGMIYASFPACPSKIPVVVLMRALGLKTD 241

Query: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            QE+   +G DP      LP + E + +   T E+AL+Y+  +V   + G P N R  RA 
Sbjct: 242  QEIAYAIGNDPIIQQEFLPVLMEQSKIAA-TPEEALDYIGSRV---SPGQPRNVRIERAQ 297

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            ++L +  L ++         K F+V  M+ R++E  L     DDKD++ NKR+  +G+L+
Sbjct: 298  AVLDENLLPHIGRGPAARISKAFFVGQMVSRLLELKLGMRGPDDKDHLANKRIRQAGELI 357

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436
            + +F   F+ ++ E+  +++      S++   +L   +  D IT  L   L+TGN+    
Sbjct: 358  AQVFRSAFRQLVKEMTYSIE---RHTSKTRDINLVSIVRPDIITERLNHALATGNW---- 410

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                R G++Q+L R +++ T+ H+ RV     +++     R L P+QWG LCP ++PEG+
Sbjct: 411  -VGGRTGVSQILDRTNYLSTISHLRRVVSPLSRTQPHFEARELHPTQWGRLCPVESPEGQ 469

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIFNGLILG 555
             CGLVK+LAL+  ++   +E  +  L    LGV  +E   G+ +     +L   NG ++G
Sbjct: 470  NCGLVKHLALLATLSNGTDEKQVYDLLVGRLGVVPVEKTVGKNISGARVYL---NGRLIG 526

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVF----------VNEKQRCVYIASDGGRVCRPLV 605
                 K  A+ +RKLRR G+I   V+V           V  +   VY+  D GR+ RPL+
Sbjct: 527  YVEDGKGLAETLRKLRREGRISHEVNVAFYSHEYTVGGVKGRIEEVYVNCDAGRIRRPLI 586

Query: 606  IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
            + + G  R+K  H++ L  G  ++ D +  G++EYLD  EE NA IA    + TP  TH+
Sbjct: 587  VVENGEPRLKHEHVELLRKGEWTWSDLIENGIVEYLDAEEEENAYIATDVSELTPQHTHL 646

Query: 666  EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
            EI P  ILG+IA  IP+  +NQSPRN+YQ AM KQ++G   +N   RMD  ++++ YPQ+
Sbjct: 647  EIVPAAILGIIAMTIPFIEYNQSPRNSYQAAMAKQSLGIPHYNFKLRMDPRMHVMYYPQK 706

Query: 726  PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
            PL+ TR  +L+  D L  G N  VAV++  GY+I+DA+V+NK++++RG  R +  + Y A
Sbjct: 707  PLVKTRIFDLLPLDNLPYGTNMVVAVLTGGGYNIQDAVVINKAAIERGMSRSVFFRTYEA 766

Query: 786  INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK 845
              ++Y     DR  +P       + +  V        I   DG+A     +      +++
Sbjct: 767  EERRYPGGLEDRFEKPSLE----KDLLDVKPPQAYEAIDPVDGIAYVEAELYGGQAVVSR 822

Query: 846  ESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
             SP     S + P   T  +  S    +    GE  ++DRV +     G    K  +R  
Sbjct: 823  TSPPRFYTSTLEPRVMTKRKDTSLLLRH----GEKGIIDRVFIMESPGGIKLAKVRVRDL 878

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R  ELGDKF+SRHGQKGV G +V QED PF+E GI PDLI+NPH  PSRMTVG+++E + 
Sbjct: 879  RPTELGDKFASRHGQKGVVGMLVPQEDMPFTEEGITPDLIINPHAIPSRMTVGQLLEAIT 938

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GKA    GR    +AF  PS     ++ I E L  +GF  +GK+++Y G+TG  L+A IF
Sbjct: 939  GKAAALAGRRIDATAFEPPS-----LDEIREILRSYGFRSDGKEVLYDGVTGEKLEAEIF 993

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            +G +YY+KL H+V DKMHAR  G   +LTRQPTEGRAR GGLR GEME+DCL+ +GASML
Sbjct: 994  IGVVYYEKLHHLVADKMHARARGRVQILTRQPTEGRAREGGLRFGEMEKDCLVGHGASML 1053

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + ERL+ SSD   + VC  CG +G+++ +    +C  C +   +S +++ YA KLL+QEL
Sbjct: 1054 LRERLLESSDKTTIWVCENCGYMGWFDARKNTPVCPVCGDKGRLSPVEVSYAFKLLLQEL 1113

Query: 1146 QSMNIVPRLKLAE 1158
              + +  RL L +
Sbjct: 1114 TGLGLSVRLILKD 1126


>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
 gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
            polypeptide
 gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
 gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
          Length = 1176

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1171 (37%), Positives = 664/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
             DDDG+ APG  +  +DV I K   L      +    +  S+ R A    +  + ET +V
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSK-RDASTFLR--NSETGIV 906

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD
Sbjct: 907  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPD 966

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G+
Sbjct: 967  IIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYGY 1022

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1023 HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1082

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  C
Sbjct: 1083 DGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGC 1142

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1143 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173


>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
 gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
          Length = 1176

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1171 (37%), Positives = 664/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I  + 
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      +   +P R     + M+  H+  L    
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGT--CQGMRNAHYDKL---- 850

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
             DDDG+ APG  +  +DV I K   L      +    +  S+ R A    +  + ET +V
Sbjct: 851  -DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSK-RDASTFLR--NSETGIV 906

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD
Sbjct: 907  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPD 966

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+ IS  L ++G+
Sbjct: 967  IIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFLQEYGY 1022

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1023 HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1082

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N +     C  C
Sbjct: 1083 DGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGC 1142

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1143 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173


>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1196

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1180 (36%), Positives = 665/1180 (56%), Gaps = 90/1180 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV--------SGIDPSIFLR-- 81
            + ++  + + +GLV+Q LDSF+ F+   ++++V  +  ++         G  P    R  
Sbjct: 47   WTVISAYFEEKGLVRQQLDSFDAFIQNTMQELVDESPDLILQPESQHKPGAGPQTQTRYI 106

Query: 82   --FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYV------QGSHTEKT 132
              F  + + +P+MT  DG ++ + P+  RL ++TY+AP+ V++         +   T ++
Sbjct: 107  INFGQIYLSRPTMTEADGSTQAMLPNEARLRNLTYSAPLFVDMSKTTITAAGEEGETHQS 166

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGK-DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            T E + V IG++PIMLRS  C+L G   + +L  LGECP D GGYF+I G+EKVL+ QE+
Sbjct: 167  TEELSRVFIGKVPIMLRSNYCMLAGAPSDKDLTELGECPYDQGGYFVINGSEKVLIAQEK 226

Query: 192  LSKNRVII---DTDKKGNINASVTSSTET---VKSKTVIQM-----EKGKMYLLLNQFVK 240
            +S N V +       K    A + S  ET     S   ++M      KG+       +++
Sbjct: 227  MSHNHVYVFKKQAPSKYAYVAEIRSCLETGSRPTSTMYVKMMQRSGSKGQTLKATIPYIR 286

Query: 241  K-IPIMVVMKAMGMESDQEVVQMVGRD---PRYSALLLPSIEECANLDIYTQEKALEYLE 296
            + IPI++V +A+G  +D+E+++++  D        +L PS+EE     I  Q  AL+Y+ 
Sbjct: 287  QDIPIIIVFRALGFVADREILELIVYDFDNKDMMEMLRPSLEEA--FVIQDQAVALDYI- 343

Query: 297  GKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            GK + +T G+    R   A  IL+   L +V +       K ++   ++ R++ A   K 
Sbjct: 344  GK-RGTTTGATREKRIKYAKEILQKEMLPHVGISQYCETKKAYFFGYIIHRLLLAAQGKR 402

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQ 412
             +DD+D+ GNKRL+L+G L+  LF  LFK +  +V    QK VD           F+L  
Sbjct: 403  PLDDRDHYGNKRLDLAGPLLGTLFRQLFKKLNKDVRGYLQKCVD-------SGKEFNLMM 455

Query: 413  FIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
             +   +IT GL+ +L+TGN+   R    + G++QVL RL+F  TL H+ R++    +  K
Sbjct: 456  AVKSKTITNGLKYSLATGNWTSTRSVGAKSGVSQVLNRLTFASTLSHLRRLNTPIGREGK 515

Query: 473  VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
            ++ PR L  + WGM+CP +TPEG+ACGLVKNLALM +++      P++        E+LE
Sbjct: 516  LAKPRQLHNTHWGMICPAETPEGQACGLVKNLALMAYISVGSASAPILEFLEEWSTENLE 575

Query: 533  LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVY 592
             +S   +  P +  +  NG  +G HR+P      +R LRR   +   VSV  + +++ + 
Sbjct: 576  EISPSNI--PAATKIFVNGAWVGIHRQPDHLVQTLRSLRRCVDVSAEVSVVRDIREQELR 633

Query: 593  IASDGGRVCRPLVIADKGISRIKEHHMKELLD-------GVRSFDDFLREGLIEYLDVNE 645
            + +D GR CRPL I DK    +K+  ++++           + +   + +G +EY+D  E
Sbjct: 634  LYTDAGRCCRPLFIVDKQRLLLKKSDIRDIQKLQQDESLSEKGWSHLVSQGFVEYIDCEE 693

Query: 646  ENNALIALYEGDATPDT---------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA 696
            E   +IA+   D              TH EI P  ILG+ A +IP+P HNQSPRNTYQ A
Sbjct: 694  EETVMIAMTIDDLKKSRSEEAYSYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 753

Query: 697  MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
            MGKQAMG    N   RMD+L ++L YPQ+PL+TT ++E + + KL +GQN  +A+  YSG
Sbjct: 754  MGKQAMGVYTTNYQLRMDTLAHVLYYPQKPLITTHSMEHLHFRKLPSGQNGIIAIACYSG 813

Query: 757  YDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHH 816
            Y+ ED++VMN+SS+DRGF R +  + Y   ++K+     +   +P R     + M + H 
Sbjct: 814  YNQEDSLVMNQSSVDRGFFRSVFYRSYVD-SEKHMGQYDEEFEKPIR----EDTMGMRHG 868

Query: 817  SNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD--SRYRSARQTYK 874
            S      ++DDGL APG  +  +D+ I K +P+       SP  +     R+     +  
Sbjct: 869  S---YEKIEDDGLIAPGTRVSGDDIIIGKTTPV-------SPNEEDTRAQRFSKKDSSIS 918

Query: 875  GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 934
                ET ++D+V L ++ +G    K  +R  R P++GDKFSSRHGQKG  G + +QED P
Sbjct: 919  VRSSETGIIDKVMLSTNSDGYKFCKVRVRSVRTPQIGDKFSSRHGQKGTVGIMYRQEDMP 978

Query: 935  FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 994
            F+  GI PD+I+NPH  PSRMT+G++IE L GK   + G     + F        TVESI
Sbjct: 979  FNIEGITPDIIVNPHAIPSRMTIGQLIECLMGKVSATTGEEGDATPFTNT-----TVESI 1033

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
            S+ L   G+   G +++Y+G TG  L+A  F+GP YYQ+LKHMV DK+H+R  GP  +LT
Sbjct: 1034 SDLLHGVGYQRRGNEVMYNGHTGRKLEAQFFIGPTYYQRLKHMVDDKIHSRARGPVQILT 1093

Query: 1055 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHK 1114
            RQP EGR+R+GGLR GEMERDC+I++GA+  + ERL   SD + V VC +CG++   N +
Sbjct: 1094 RQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLYDQSDAYRVHVCDLCGMIAIANLR 1153

Query: 1115 LKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                 C +C+N   IS + +PYACKLL QEL SM I PR+
Sbjct: 1154 KNTFECRSCRNKTQISQVHIPYACKLLFQELMSMCIAPRM 1193


>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
 gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1188 (38%), Positives = 662/1188 (55%), Gaps = 91/1188 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S +  +
Sbjct: 32   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDVAET 91

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 92   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 151

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C LY   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 152  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 211

Query: 191  QLSKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--L 234
            ++S N V +   ++ N  A V              ST  V+  S+T  +      Y+   
Sbjct: 212  KMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 271

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
            L     +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 272  LPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVA 329

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + ST G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 330  LDYI-GK-RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLC 387

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
             L + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD           
Sbjct: 388  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKD 440

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 441  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 500

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 501  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 560

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG  +G HR P+     +R+LRR   +   V V  + +
Sbjct: 561  TENFEEISPAVI--PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIR 618

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVRSFDDFLREGLIEYL 641
             + + I +D GR  RPL I +K    IK+  +  L       DG   + D + +G IEY+
Sbjct: 619  LKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDG--GWHDLVAKGFIEYI 676

Query: 642  DVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPR 690
            D  EE   +I++   D          A  DT TH EI P  ILGV A +IP+P HNQSPR
Sbjct: 677  DTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 736

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA
Sbjct: 737  NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 796

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            +  YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR+      
Sbjct: 797  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT---- 852

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
            M + H S      LDDDGLA PG  +   DV I K +P+    S     GQ  +RY    
Sbjct: 853  MGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQEEAQGQA-ARYSRRD 904

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             +      E  +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    Q
Sbjct: 905  HSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 964

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      T
Sbjct: 965  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----T 1019

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V++IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP 
Sbjct: 1020 VDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1079

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + + VC  CGL+  
Sbjct: 1080 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAI 1139

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             N K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+   E
Sbjct: 1140 ANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKE 1187


>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1182 (39%), Positives = 661/1182 (55%), Gaps = 87/1182 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 28   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 87

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 88   IYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 147

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C LY   E +L  LGECPLD GGYFII G+EKVL+ QE
Sbjct: 148  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 207

Query: 191  QLSKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--L 234
            ++S N V +   ++ N  A V              ST  V+  S+T  +      Y+   
Sbjct: 208  KMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 267

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
            L     +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 268  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA--FVIQNQQVA 325

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 326  LDYI-GK-RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 383

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L + A DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 384  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKD 436

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 437  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 496

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 497  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXG 556

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  BG  +G HR P      +R+LRR   +   V V  + +
Sbjct: 557  TENFEEISPAVI--PQATKIFVBGTWMGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIR 614

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR----SFDDFLREGLIEYLDV 643
             + + I +D GR  RPL I +K    IK+  +++L          + D + +G IEY+D 
Sbjct: 615  LKELRIYTDYGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYIDT 674

Query: 644  NEENNALIALY----------EGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++             DA  DT TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 675  EEEETTMISMTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 734

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 735  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 794

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR    A  M 
Sbjct: 795  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ASTMG 850

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDGLA PG  +   DV I K +P+    S     GQ  SRY     +
Sbjct: 851  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDDAQGQA-SRYTRKDHS 902

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 903  TSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 962

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 963  MPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 1017

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1018 NISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1077

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N
Sbjct: 1078 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN 1137

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+
Sbjct: 1138 LKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1179


>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
 gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
          Length = 1175

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1175 (37%), Positives = 662/1175 (56%), Gaps = 85/1175 (7%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F
Sbjct: 29   VINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPIIDLQAEAQHASGEIENPPHYLLKF 88

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTTMEKND 138
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I      +G    +T  +K+ 
Sbjct: 89   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKKIIKEGEDPIETKHQKS- 147

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
              IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V 
Sbjct: 148  -FIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 206

Query: 199  IDTDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKK 241
            + + K      K  I + +  S+    +  V  M +G           ++  +L    ++
Sbjct: 207  VFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQE 266

Query: 242  IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPIM+V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +
Sbjct: 267  IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR 324

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
              R   G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +
Sbjct: 325  GARP--GVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRREL 382

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFI 414
            DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I
Sbjct: 383  DDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFID-------RGKDFNLELAI 435

Query: 415  VRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473
                IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K+
Sbjct: 436  KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKL 495

Query: 474  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL 533
            + PR L  + WGM+CP +TPEG A GLVKN+ALM +++   +  P++       +E+LE 
Sbjct: 496  AKPRQLHNTLWGMICPAETPEGAAVGLVKNIALMAYISVGSQPSPILEFLEEWSMENLEE 555

Query: 534  LSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVY 592
            ++   + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + 
Sbjct: 556  IAPSAIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIR 613

Query: 593  IASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEEN 647
            I +D GR+CRPL+I + G   +K++H+  L +  R +++F     +  G++EY+D  EE 
Sbjct: 614  IYTDAGRICRPLLIVEGGQLLLKKNHVNMLKE--REYNNFGWQVLVASGVVEYIDTLEEE 671

Query: 648  NALIALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
              +IA+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGK
Sbjct: 672  TVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 731

Query: 700  QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
            QAMG    N   RMD+L ++L YP +PL+ TR++E + + +L AG N+ VA++ Y+GY+ 
Sbjct: 732  QAMGVYITNYHVRMDTLAHVLFYPHKPLVITRSMEYLRFRELPAGINSIVAILCYTGYNQ 791

Query: 760  EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNL 819
            ED++++N S+++RG+ R +  + Y     K      ++  +P+R      R       N 
Sbjct: 792  EDSVILNASAVERGYFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMR-------NA 844

Query: 820  LLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 879
            +   LDDDG+ APG  +  +DV I K   L      +   G T  RY     +    + E
Sbjct: 845  MYDKLDDDGIIAPGVRVSGDDVIIGKTITLPDNDDELE--GAT-KRYTKRDASTFLRNSE 901

Query: 880  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 939
            T  VD+V +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G
Sbjct: 902  TGCVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 961

Query: 940  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 999
            + PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L 
Sbjct: 962  LTPDIIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQ 1017

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
            ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP E
Sbjct: 1018 EYGYQLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPME 1077

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI 1119
            GRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     
Sbjct: 1078 GRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE 1137

Query: 1120 CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C  CKN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1138 CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
 gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/1180 (38%), Positives = 658/1180 (55%), Gaps = 87/1180 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPSIF 79
            + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +I+
Sbjct: 29   WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIY 88

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTME 135
             + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +   E
Sbjct: 89   KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTE 148

Query: 136  KND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
              D   V IG++PIMLRS  C LY   E +L  LGECP D GGYFII G+EKVL+ QE++
Sbjct: 149  TQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 208

Query: 193  SKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--LLN 236
            S N V +   ++ N  A V              ST  V+  S+T  +      Y+   L 
Sbjct: 209  STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLP 268

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALE 293
                +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ AL+
Sbjct: 269  YIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALD 326

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++   L
Sbjct: 327  YI-GK-RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 384

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSRFD 409
             + A DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD            +
Sbjct: 385  GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKDVN 437

Query: 410  LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
            L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++    +
Sbjct: 438  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 497

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G E
Sbjct: 498  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 557

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
            + E +S   +  P +  +  NG  +G HR P      +R+LRR   +   V V  + + +
Sbjct: 558  NFEEISPAVI--PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLK 615

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS----FDDFLREGLIEYLDVNE 645
             + I +D GR  RPL I +K    IK+  +  L     S    + D + +G IEY+D  E
Sbjct: 616  ELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEE 675

Query: 646  ENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
            E   +I++   D          A  DT TH EI P  ILGV A +IP+P HNQSPRNTYQ
Sbjct: 676  EETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 735

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  Y
Sbjct: 736  SAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 795

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVV 814
            SGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR    A  M + 
Sbjct: 796  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ANTMGMR 851

Query: 815  HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK 874
            H S      LDDDGLA PG  +   DV I K +P+          GQ+ +RY     +  
Sbjct: 852  HGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQE----EAQGQS-ARYTRRDHSIS 903

Query: 875  GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 934
                ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P
Sbjct: 904  LRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 963

Query: 935  FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 994
            ++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV++I
Sbjct: 964  WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNI 1018

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
            S+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +LT
Sbjct: 1019 SKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1078

Query: 1055 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHK 1114
            RQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N K
Sbjct: 1079 RQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLK 1138

Query: 1115 LKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              +  C  CKN  +I  + +PYACKLL QEL +M I PR+
Sbjct: 1139 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1178


>gi|212223363|ref|YP_002306599.1| DNA-directed RNA polymerase subunit B [Thermococcus onnurineus NA1]
 gi|212008320|gb|ACJ15702.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus onnurineus
            NA1]
          Length = 1120

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1148 (37%), Positives = 665/1148 (57%), Gaps = 61/1148 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K +GLV+QHLDS+N F++ G+++++     I   I P   ++F  +R+G+
Sbjct: 13   DLWLVMEAYWKEKGLVRQHLDSYNAFIDYGMQQVINEFGGIKPDI-PDFEVKFGKIRLGE 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  V G        E  +V IG +PIM
Sbjct: 72   PEFQEAQGQRKPLYPMDARIRNLTYSAPLYLELIPVVNG-----IAQEPVEVRIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E L+ N+ +++ D++ N 
Sbjct: 127  LKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNR 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            I A   S     ++   ++  K G +Y+ +    + +  + VM+A+G+ESD+E+V+ V  
Sbjct: 187  IIAKCFSYRHGYRALITVERRKDGILYVNIPNVPRPVKFVYVMRALGLESDKEIVEAVSD 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            DPR   +L  ++E+ +  DI ++E+AL+Y+ GK+  +  G P   R  RA  I+ +  L 
Sbjct: 247  DPRIQQVLFDNLEDAS--DIMSREEALDYI-GKL--ALPGQPKEYRLRRAEHIIDNNLLP 301

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++ V   + R K +Y+ +M  +++E  L     DDKD+  NKRL+L+G L+  LF   F 
Sbjct: 302  HMGVEEKDRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFG 361

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
             ++ ++Q  +     +      F+  Q  VR+SI     +  +E  L+TG +        
Sbjct: 362  QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGAW-----PGG 416

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            R G++Q+L R +++ TL H+ RV+    + +     R L  + WG +CP +TPEG  CGL
Sbjct: 417  RTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGL 476

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM  +TT   E  +      LGV  +E    E+  +   + V  NG+++G     
Sbjct: 477  VKNLALMAQITTGIPEEEVRDYLNRLGVVPIE----EKRPSLELWRVYLNGVLIGTVEDG 532

Query: 561  KCFADVMRKLRRAGKIGEF--VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            +     +R  RR+G+I +   V+++ +E+ + +Y+ SD GRV RPL+I + G  ++   H
Sbjct: 533  ERLVKRIRADRRSGRISDVINVAIYQDEEVKEIYVNSDDGRVRRPLIIVENGQPKLTREH 592

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            ++ + +G  ++ D ++ G+IEYLD  EE NA +A +  + T + TH+E+ P  ILG+ A 
Sbjct: 593  VEGIKNGTLTWSDLIKMGVIEYLDAEEEENAYVATWPWEVTAEHTHLELMPAAILGIPAS 652

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            L+PYP HN +PRNTY   M KQ++G    N   R+D+  + + YPQ PL+ +R ++ VG+
Sbjct: 653  LVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHFMHYPQVPLVNSRIMKAVGF 712

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            ++  AGQN  VAV+SY GY++EDAI+MNK+S++RG  R    + Y A  ++Y    +DR 
Sbjct: 713  EERPAGQNFVVAVLSYQGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 772

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETR--- 852
              PD T  G    +   H       LD+DG+  P   ++  DV + + SP   LE +   
Sbjct: 773  EVPDPTIQGYLGEKYYRH-------LDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGL 825

Query: 853  -GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
             G I+    +T    R +         E  +VD+V +    +G   +K  +R  R PE G
Sbjct: 826  GGIILQERRETSVAVRPS---------EKGIVDKVIITETGDGTKLVKVTVRDLRIPEFG 876

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK    
Sbjct: 877  DKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASL 936

Query: 972  CGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
             GR   G+AF GEP       E + + L + GF ++G++++Y GITG  L+A IF+G IY
Sbjct: 937  KGRRVDGTAFIGEPE------ERLRKELEELGFKHSGREVMYDGITGRRLEADIFVGVIY 990

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+L HMV DKMHAR  GP  +LT+QPTEGRAR GGLR GEMERD LI +GA+ML+ ERL
Sbjct: 991  YQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERL 1050

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            +  SD  EV  C  CG L   + +     C  C   + IS +++ YA KLL+ EL++M I
Sbjct: 1051 LEESDKTEVWACESCGHLALEDKRRGKVYCPVCGEEEKISKVEMSYAFKLLLDELKAMGI 1110

Query: 1151 VPRLKLAE 1158
             P L + +
Sbjct: 1111 RPSLNIVD 1118


>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1194 (38%), Positives = 657/1194 (55%), Gaps = 103/1194 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND-------------RIVSGIDP 76
            D + ++  + + +GLV+Q LDSF+ F+   +++IV                 R    +D 
Sbjct: 38   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQSDFVDT 97

Query: 77   SIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
               ++F  + + +P MT  DG +  L P   RL ++TY++P+ V++  E ++  H  +  
Sbjct: 98   IYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIKKGHDYEEV 157

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  +   V IG++PIMLRS  C LY   E +L  LGECP D GGYFI+ G+EKVL+ QE
Sbjct: 158  SECQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQE 217

Query: 191  QLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLL-----------NQFV 239
            ++S N V +   ++ N  A V       + +T        M++ +            Q++
Sbjct: 218  KMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQT---KAPSTMFVRMLSRSNAKVGSSGQYI 274

Query: 240  K--------KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQ 288
            K        +IPI++V +A+G  +D++++  +     D +   LL PS+EE     I  Q
Sbjct: 275  KATLPYIKNEIPIIIVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEA--FVIQNQ 332

Query: 289  EKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRM 348
            + AL+Y+ GK + ST G     R   A  IL+   L +V         K +Y   ++ R+
Sbjct: 333  QVALDYI-GK-RGSTVGFSRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRL 390

Query: 349  VEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSR 404
            +  +L +   DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD        
Sbjct: 391  LLCVLGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------S 443

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
                +L   I   +IT GL+ +L+TGN+        R G++QVL RL+F  TL H+ R++
Sbjct: 444  GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLN 503

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++    
Sbjct: 504  SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLE 563

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
                E+ E +S   +  P S  +  NG  +G HR P      +R+LRR   +   V V  
Sbjct: 564  EWSTENFEEISPAVI--PQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVR 621

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK--ELLDGVRS--FDDFLREGLIEY 640
            N   + + + +D GR  RPL I DK    IK+  +   +L D      + D   +G IEY
Sbjct: 622  NINLKELRLYTDYGRCSRPLFIVDKKKLIIKKKDILALQLRDSSEDSGWHDLXAKGFIEY 681

Query: 641  LDVNEENNALIALYEGDATPDT-----------THIEIEPFTILGVIAGLIPYPHHNQSP 689
            +D  EE   +IA+   D T              TH EI P  ILGV A +IP+P HNQSP
Sbjct: 682  VDTEEEETTMIAMTINDLTNSRLNPSEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 741

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA V
Sbjct: 742  RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 801

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            A+  YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR      
Sbjct: 802  AISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRENT--- 858

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
             M + H S      LDDDG A PG  +  +DV I K +P+           Q D++ +SA
Sbjct: 859  -MGMRHGS---YDKLDDDGFAPPGTRVSGDDVIIGKTTPI----------SQDDAQGQSA 904

Query: 870  RQTYKGPD-----GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
            R T K         ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  
Sbjct: 905  RYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTI 964

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G    QED P++  GI PD+I+NPH  PSRMT+G+++E + GK     G+    + F + 
Sbjct: 965  GMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGKEGDATPFTDV 1024

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TV++IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+
Sbjct: 1025 -----TVDNISKALHKCGYQMRGFERMYNGHTGRILTAMIFLGPTYYQRLKHMVDDKIHS 1079

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            RG GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + + VC+ 
Sbjct: 1080 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCQQ 1139

Query: 1105 CGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            CGL+   N K  +  C +CKN  +I  + +PYACKLLIQEL SM I PR+   E
Sbjct: 1140 CGLIAIANLKKISFECRSCKNKTDIVQVYIPYACKLLIQELMSMAIAPRMLTKE 1193


>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
 gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
          Length = 1176

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1178 (37%), Positives = 663/1178 (56%), Gaps = 99/1178 (8%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID----------PSIF-LRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  +  I    +          P+ + L+F  + 
Sbjct: 34   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTTGDIETPTRYVLKFDQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 94   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQK--TFIG 151

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 152  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +     M +G           ++  +L    ++IPIM
Sbjct: 212  KDGKYAYKSEIRSCLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIM 271

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 272  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 330  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 387

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 388  HYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFID-------RGKDFNLELAIKTKI 440

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 441  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 501  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 561  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   ++++H+  L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 619  AGRICRPLLIVENGSLLLRKNHVDMLKE--RDYNNYGWQVLVASGVVEYIDTLEEETVMI 676

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677  AMTPYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      ++  +P+R      R       N L   
Sbjct: 797  ILNASAVERGFFRSVFYRSYKDSESKKIGDQEEQFEKPNRQTCQGMR-------NALYDK 849

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG----- 878
            LDDDG+ APG  +  +DV I K        +I  P  +TD       + Y   DG     
Sbjct: 850  LDDDGIIAPGLRVSGDDVVIGK--------TITLP--ETDDDLDGTTKRYSKRDGSTFLR 899

Query: 879  --ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+
Sbjct: 900  NSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 959

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              G+ PD+I+NPH  PSRMT+G +IE + GK G + G     + F +    A  V+ IS 
Sbjct: 960  CEGLTPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFND----AVNVQKIST 1015

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQ
Sbjct: 1016 FLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQ 1075

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            P EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +  
Sbjct: 1076 PMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNN 1135

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               C  CKN   IS +KLPYA KLL QEL SMNI PRL
Sbjct: 1136 TFECKGCKNKTQISQVKLPYAAKLLFQELMSMNIAPRL 1173


>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
 gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
          Length = 1207

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1175 (37%), Positives = 668/1175 (56%), Gaps = 76/1175 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR---------ANDRIVSGID-PSIF-L 80
            + ++  +   +GLV+Q LDSF+ FV   +++IV           N  + + ++ P+ F L
Sbjct: 41   WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGNDMENPAKFSL 100

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
            +F  + + +P+    DG    + P+  RL ++TYA+P+ V+I  V              V
Sbjct: 101  KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSVNEKVYEKV 160

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             +G++P+MLRS  C+L    + +L  L ECPLDPGGYF+I G+EKVL+ QE+++ N V +
Sbjct: 161  FVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYV 220

Query: 200  DTDKKGNI------NASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKI 242
             + K G         + + +S+    +  V  + +G           ++  +L    ++I
Sbjct: 221  FSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEI 280

Query: 243  PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
            PIM+V +A+G  SD++++  +     DP    ++ PS++E     I  Q  AL ++  + 
Sbjct: 281  PIMIVFRALGFVSDRDILGHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR- 337

Query: 300  KRSTFGSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
                 G+ P   RE R   A  IL+   L +V V  +    K F++  M+ R++ A L +
Sbjct: 338  -----GAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 392

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS-----RSSRFDL 410
              +DD+D++GNKRL+L+G L++ LF  LF+ ++ E   T  I +   +     ++  F L
Sbjct: 393  RELDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEKMITSCIQMRMTAQKYINKNDDFAL 452

Query: 411  SQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
               +   +IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ R +    +
Sbjct: 453  DVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGR 512

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR L  +QWGM+CP +TPEG+A GLVKNLALM +++      P++       +E
Sbjct: 513  EGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSME 572

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQ 588
            +LE +S   + +     V  NG  +G HR P      ++KLRR   I    VS+  + + 
Sbjct: 573  NLEEVSPSAIADATKIFV--NGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRD 630

Query: 589  RCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD----GVRSFDDFLREGLIEYLDVN 644
            R + I +D GRVCRPL+I +     +++ H+ +L D       ++ D +  G++E +D  
Sbjct: 631  REIRIYTDAGRVCRPLLIVEDQKLALRKRHIDQLKDIDEANKYTWSDLVGGGVVELIDSM 690

Query: 645  EENNALIALYEGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
            EE  ++IA+   D       DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGK
Sbjct: 691  EEETSMIAMMPEDLRSGVYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 750

Query: 700  QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
            QAMG    N   RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++SYSGY+ 
Sbjct: 751  QAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQ 810

Query: 760  EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNL 819
            ED+++MN S++DRG  R +  + Y        N+  + I +P R     E+   + HS  
Sbjct: 811  EDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTR-----EKCSGMRHS-- 863

Query: 820  LLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 879
            L   LD+DG+ +PG  +  +DV I K   L      +  TG+   + R A    +    E
Sbjct: 864  LYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPK-RDASTFLRS--SE 920

Query: 880  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 939
            T +VD+V L  + +G+  +K  +R  R P++GDKF+SRHGQKG  G + +QED PF+  G
Sbjct: 921  TGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEG 980

Query: 940  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 999
            + PD+I+NPH  PSRMT+G +IE L GK   + G     + F +       V+ IS  L 
Sbjct: 981  LTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV----NVQKISGLLC 1036

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
            ++G+   G +++Y+G TG  L   IF GP YYQ+LKHMV DK+H+R  GP  M+ RQP E
Sbjct: 1037 EYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPME 1096

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI 1119
            GRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ V VC  CGL+   N +  +  
Sbjct: 1097 GRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFE 1156

Query: 1120 CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C  C+N   +S++++PYACKLL QEL SM+I PRL
Sbjct: 1157 CKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1191


>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
          Length = 1175

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1169 (37%), Positives = 657/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEVENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLMELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  +L    ++IP+MVV
Sbjct: 213  GKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPVMVV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLDLAIKTKLIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R ++++     + +G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGQLLLKKRHIDMLKE--REYNNYGWQVLVAQGVVEYIDTLEEETVMIAI 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPDDLRQEKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDSECKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ +PG  +  +DV I K   L      +  T +  S+ R A    +  + ET VVD+
Sbjct: 851  DDGIISPGIRVSGDDVVIGKTMTLPENDDELDGTTKKFSK-RDASTFLR--NSETGVVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  GI PD+I
Sbjct: 908  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGITPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYHL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQIRLPYAAKLLFQELMSMNIAPRL 1172


>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
          Length = 1175

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1169 (37%), Positives = 654/1169 (55%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTSGEMENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEPIVTQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSSFCLLSKLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKAAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLDLAIKTKMIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI-----EYLDVNEENNALIAL 653
            R+ RPL+I + G   +K+ H+  L D  R ++++  +GL+     EY+D  EE   +IA+
Sbjct: 620  RISRPLIIVENGSLLLKKSHIDMLKD--REYNNYGWQGLVGSGVVEYIDTLEEETTMIAI 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D             TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPDDLRNSKEYAYCSTYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       + L   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDSESKRIGEQEEQFEKPTRQTCSGMR-------HALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ +PG  +  +DV I K   L      +  T +   RY     +    + ET VVD+
Sbjct: 851  DDGIISPGVRVSGDDVVIGKTMTLPENEDELEGTTK---RYTKRDASTFLRNSETGVVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I
Sbjct: 908  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECIQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F GP YYQ+LKHMV DK+H+R  GP  +L RQP+EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKINAQVFFGPTYYQRLKHMVDDKIHSRARGPLQILVRQPSEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
          Length = 1176

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1165 (37%), Positives = 656/1165 (56%), Gaps = 73/1165 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F  + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHSSGEIETPPKYHLKFDQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +   + +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKENEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + + 
Sbjct: 153  PIMLRSTYCLLSNLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMQG 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  ++    ++IPIM+V
Sbjct: 213  GKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALSFIGARGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLE 424
            GNKRL+L+G L++ LF  LFK ++ EV+      + K      F+L   I    IT GL 
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDK---GKDFNLELAIKTKIITDGLR 445

Query: 425  RTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQ 483
             +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L  + 
Sbjct: 446  YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 505

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   + +  
Sbjct: 506  WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 565

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCR 602
               V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D GR+CR
Sbjct: 566  KIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICR 623

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIALYEGD 657
            PL+I + G   +K+ H+ +L +  R ++++     +  G++EY+D  EE   +IA+   D
Sbjct: 624  PLLIVENGSLLLKKKHIDQLKE--RDYNNYGWQNLVASGVVEYIDTLEEETVMIAMNPDD 681

Query: 658  AT--------PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
                         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 682  LQQIKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N S+
Sbjct: 742  HVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            ++RGF R +  + Y     K      ++  +P R      R       N L   LDDDG+
Sbjct: 802  VERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLDDDGI 854

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V L 
Sbjct: 855  IAPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTK-RDASTFLR--NSETGIVDQVMLT 911

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
             +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I+NPH
Sbjct: 912  LNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPH 971

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   G +
Sbjct: 972  AIPSRMTIGHLIECIQGK--VSSNKGEIGDA--TPFNDAVNVQKISSLLQEYGYHLRGNE 1027

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGLR 
Sbjct: 1028 VMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 1087

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN   I
Sbjct: 1088 GEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQI 1147

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRL 1154
            S ++LPYA KLL QEL SMNI PRL
Sbjct: 1148 SQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
            vitripennis]
          Length = 1175

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1170 (37%), Positives = 659/1170 (56%), Gaps = 79/1170 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI---------VSGIDPSI--FLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I            I+      ++F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIEMSVQRIVEESPQIDLQAEAQHRTGDIETPTRHLVKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E T  +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEPTETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSIKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+  V +  +  M K            ++  +L    ++IPIM+V
Sbjct: 213  GKYAYKAEIRSCLEHSSRPVSTLWINMMSKSGAAIKKSAIGQRIIAILPYIRQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKERRIKYAREILQKETLPHVGVSDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLARPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG+A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMLCPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P      +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+ RPL+I +  +  +K+ H   +KE       + + + +G++EY+D  EE   +IA+  
Sbjct: 620  RISRPLLIVENQLLLLKKRHIEMLKERDYNNDGWQELVSQGVVEYIDTLEEETVMIAMSP 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  EDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+I++N 
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSIILNT 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P+R      R       N +   LD+D
Sbjct: 800  SAVERGFFRSVFYRSYKDSETKRLGDVEEQFEKPNRQTCQGMR-------NAIYDKLDED 852

Query: 828  GLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            G+ +PG  +  +DV I K   L ET   + S T +   R  S        + ET +VD+V
Sbjct: 853  GIISPGIRVSGDDVIIGKTMTLPETDDDLDSSTKRFTKRDASTFLR----NSETGIVDQV 908

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+
Sbjct: 909  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGMTPDIII 968

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L+++G+   
Sbjct: 969  NPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLMEYGYQLR 1024

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GG
Sbjct: 1025 GNEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 1084

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126
            LR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN 
Sbjct: 1085 LRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNK 1144

Query: 1127 DNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
              IS ++LPYA KLL QEL SMNI PRL +
Sbjct: 1145 TQISQVRLPYAAKLLFQELMSMNIAPRLMI 1174


>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera]
 gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
 gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
          Length = 1193

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1188 (38%), Positives = 659/1188 (55%), Gaps = 91/1188 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND----RIVSGIDP---SIFLR- 81
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +     R  S  +P   S FL  
Sbjct: 26   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLET 85

Query: 82   -----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKT 132
                 F  + + +P MT  DG +  L P   RL ++TY+AP+ V++      +G   E+ 
Sbjct: 86   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEV 145

Query: 133  T--MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            T   E   V IG++PIMLRS  C +Y   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 146  TETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 205

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLL 235
            ++S N V +   ++ N  A      S+  S     S   ++M           G+     
Sbjct: 206  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRAT 265

Query: 236  NQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
              +++ +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 266  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVA 323

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + ST G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 324  LDYI-GK-RGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 381

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
             L +   DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD           
Sbjct: 382  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD-------NGKD 434

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 435  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 494

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++       
Sbjct: 495  GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWS 554

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P S  +  NG  +G HR P      +R+LRR   +   V V  + +
Sbjct: 555  TENFEEISPAVI--PQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIR 612

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVRSFDDFLREGLIEYL 641
             + + + +D GR  RPL I +K    IK+  ++ L       DG   + D + +G IEY+
Sbjct: 613  LKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDG--GWHDLVSKGFIEYV 670

Query: 642  DVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPR 690
            D  EE   +I++   D          A  +T TH EI P  ILGV A +IP+P HNQSPR
Sbjct: 671  DTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 730

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA
Sbjct: 731  NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 790

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            +  YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RP+R       
Sbjct: 791  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENT---- 846

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
            M + H S      LDDDGLA PG  +   DV I K +P+    S     GQ  SRY    
Sbjct: 847  MGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDS----QGQA-SRYTRRD 898

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             +      E+ +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    Q
Sbjct: 899  HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 958

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      T
Sbjct: 959  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----T 1013

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V++IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP 
Sbjct: 1014 VDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1073

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+  
Sbjct: 1074 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI 1133

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             N K  +  C  CKN  +I  + +PYACKLL QEL +M I PR+   E
Sbjct: 1134 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE 1181


>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
 gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1182 (38%), Positives = 659/1182 (55%), Gaps = 87/1182 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 25   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 84

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 85   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C L+   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 145  TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLL 235
            ++S N V +   ++ N  A      S+  +     S   ++M           G+     
Sbjct: 205  KMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCT 264

Query: 236  NQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
              +++ +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q  A
Sbjct: 265  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQLVA 322

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V +  +    K +Y   ++ R++  
Sbjct: 323  LDYI-GK-RGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLC 380

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L +   DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 381  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKE 433

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 434  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 493

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 494  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 553

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG+ +G HR P      +R+LRR   +   V V  + +
Sbjct: 554  TENFEEISPSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIR 611

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDV 643
             + + I +D GR  RPL I D     IK+  +  L     + +D     + +G IEY+D 
Sbjct: 612  LKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDT 671

Query: 644  NEENNALIALYEGD-----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++   D            T + TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 672  EEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 731

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 732  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 791

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR       M 
Sbjct: 792  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----GSTMG 847

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDGLA PG  +   DV I K +P+    S     GQ+ SRY     +
Sbjct: 848  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDEAQGQS-SRYTRRDHS 899

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  G+ PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 1014

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L K G+   G + +Y+G TG PL A IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1015 NISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1074

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC VCGL+   N
Sbjct: 1075 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIAN 1134

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             K  +  C  CKN  +I  + +PYACKLL QEL SM I PR+
Sbjct: 1135 LKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176


>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
          Length = 1176

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1177 (37%), Positives = 661/1177 (56%), Gaps = 87/1177 (7%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV  + +I         SG     P   L+F
Sbjct: 28   VINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEHPPHYLLKF 87

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKND 138
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I      +G    +T  +K+ 
Sbjct: 88   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQKS- 146

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
              IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V 
Sbjct: 147  -FIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 205

Query: 199  IDTDKKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKK 241
            + + K G       I + +  S+    +  V  M +G           ++  +L    ++
Sbjct: 206  VFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQE 265

Query: 242  IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPIM+V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +
Sbjct: 266  IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR 323

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
              R   G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +
Sbjct: 324  GARP--GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRREL 381

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFI 414
            DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I
Sbjct: 382  DDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFID-------RGKDFNLELAI 434

Query: 415  VRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473
                IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K+
Sbjct: 435  KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKL 494

Query: 474  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL 533
            + PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE 
Sbjct: 495  AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 554

Query: 534  LSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVY 592
            ++   + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + 
Sbjct: 555  IAPSAIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIR 612

Query: 593  IASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEEN 647
            I +D GR+CRPL+I + G   +K +H+  L +  R F+++     +  G++EY+D  EE 
Sbjct: 613  IYTDAGRICRPLLIVENGQLLLKRNHVNMLKE--REFNNYGWQVLVASGVVEYIDTLEEE 670

Query: 648  NALIALYEGDA----------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAM 697
              +IA+   D               TH EI P  ILGV A +IP+P HNQSPRNTYQ AM
Sbjct: 671  TVMIAMNLDDLRGGQEKEYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 730

Query: 698  GKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 757
            GKQAMG    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY
Sbjct: 731  GKQAMGVYITNYHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGY 790

Query: 758  DIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHS 817
            + ED++++N S+++RG+ R    + Y     K      ++  +P R      R       
Sbjct: 791  NQEDSVILNASAVERGYFRSCFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR------- 843

Query: 818  NLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 877
            N +   LDDDG+  PG  +  +DV I K   L      +  T +  ++ R A    +  +
Sbjct: 844  NAMYDKLDDDGIITPGVRVSGDDVVIGKTITLPDTDDDLEGTTRRFTK-RDASTFLR--N 900

Query: 878  GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 937
             ET  VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+ 
Sbjct: 901  SETGCVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC 960

Query: 938  RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISET 997
             G+ PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  
Sbjct: 961  EGLTPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISTL 1016

Query: 998  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP 1057
            L ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP
Sbjct: 1017 LQEYGYHLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQP 1076

Query: 1058 TEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKA 1117
             EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC +CGL+   N +   
Sbjct: 1077 MEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNT 1136

Query: 1118 GICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              C  CKN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1137 FECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173


>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
 gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
          Length = 1175

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1169 (37%), Positives = 659/1169 (56%), Gaps = 81/1169 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGI--DPSIFL-RFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG   +PS +L +F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGELENPSRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  M +G           ++  +L    ++IPIM+V
Sbjct: 213  GKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNIALNFIGTRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLDLAIKTKLIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             N     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ANATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVENGTLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N L   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPTRQTCQGMR-------NALYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET VVD+
Sbjct: 851  DDGIIAPGIRVSGDDVVIGKTMTLPENDDELDGTTKRFTK-RDASTFLR--NSETGVVDQ 907

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD+I
Sbjct: 908  VMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDII 967

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+  
Sbjct: 968  INPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQL 1023

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+G
Sbjct: 1024 RGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 1083

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC I++GA+  + ERL   SD + + VC  CGL+   N +     C  CKN
Sbjct: 1084 GLRFGEMERDCQISHGAAQFLRERLFEVSDQYRIHVCNFCGLIAIANMRNNTFECKGCKN 1143

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
          Length = 1175

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1171 (37%), Positives = 663/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I      +G    +T  +K    IG
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQK--TFIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   
Sbjct: 151  KIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAM 210

Query: 203  K------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K      K  I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLDLAIKTKM 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K++ PR
Sbjct: 440  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +K+ H+  L +  R ++++     +  G++EY+D  EE   +I
Sbjct: 618  SGRICRPLLIVENGKLLLKKRHIDMLKE--REYNNYGWQVLVASGVVEYIDTLEEETVMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   +         TH EI    ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMSPEDLRHEKEYAYCTTHTHCEIHAAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 736  VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      ++  +P R     + M+  H+  L    
Sbjct: 796  ILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQT--CQGMRNAHYDKL---- 849

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
             DDDG+ +PG  +  +DV I K   L      +  T +  ++ R A    +  + ET VV
Sbjct: 850  -DDDGIISPGIRVSGDDVVIGKTITLPENEDELEGTTKRFTK-RDASTFLR--NSETGVV 905

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD
Sbjct: 906  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPD 965

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+
Sbjct: 966  IIINPHAIPSRMTIGHLIECIQGK--VSSNKGEIGDA--TPFNDAVNVQKISTLLQEYGY 1021

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1022 HLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1081

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  C
Sbjct: 1082 DGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGC 1141

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1142 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
 gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
            [Brugia malayi]
          Length = 1185

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1187 (36%), Positives = 668/1187 (56%), Gaps = 91/1187 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGI--DPSIF-L 80
            + ++  +   +GLV+Q LDSF+ F+   +++IV  +  +         SG   +P  F L
Sbjct: 29   WVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVENPIKFAL 88

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEK 136
            +F  + + +P+    DG    + P+  RL ++TY++P+ ++I       G   ++T  EK
Sbjct: 89   KFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRSGEEPKETKYEK 148

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
              V +G+IPIMLRS  C+L    + +L+ L ECPLDPGGYF+I G+EKVL+ QE+++ N 
Sbjct: 149  --VFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQEKMATNT 206

Query: 197  VIIDTDKKGNIN--------------------ASVTSSTETVKSKTVIQMEKG------- 229
            V + + K G                        S+   T    +  V  + +G       
Sbjct: 207  VYVFSMKDGKYTYKTECRSCLENSRQVLKQYFLSILEVTRPTSTLWVNMLPRGGGGSKKS 266

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECAN 282
                K+  +L    ++IP+M+V +A+G  SD ++++ +     DP    ++ PS++E   
Sbjct: 267  AMGPKIIAILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEA-- 324

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
              I  Q  AL ++  +  +   G     R   A  IL+   L +V + +     K +++ 
Sbjct: 325  FVIQEQNVALNFIGARGAKP--GVTKEQRIKYAREILQKEMLPHVGISDFCETKKAYFLG 382

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ R++ A L +  +DD+D++GNKRL+L+G L++ LF  LF+ ++ EV+ T    ++K 
Sbjct: 383  YMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINK- 441

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
              +  F L   +    IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ 
Sbjct: 442  --NGDFMLDLCVKTPLITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLR 499

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  +QWGM+CP +TPEG+A GLVKNLALM +++      P++ 
Sbjct: 500  RCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILE 559

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFV 580
                  +E+LE ++   + +     V  NG  +G HR P+     ++KLRR   I    V
Sbjct: 560  FLEEWSMENLEEVAPTAIADATKIFV--NGAWVGIHRDPEQLMTTLKKLRREMDIIVSEV 617

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEY 640
            S+  + + R + I +D GRVCRPL+I +     +K  H+ +L D   ++ + +  G++E 
Sbjct: 618  SMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDNSYTWSELVAGGVVEL 677

Query: 641  LDVNEENNALIALYEGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQC 695
            +D  EE   ++A+   D       DT TH EI P  ILGV A +IP+P HNQSPRNTYQ 
Sbjct: 678  IDAMEEETVMLAMMPEDLKAGGYCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS 737

Query: 696  AMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 755
            AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++SY+
Sbjct: 738  AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYT 797

Query: 756  GYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVH 815
            GY+ ED+I+MN+S +DRG  R +  + Y        N+  + I +P R     ++   + 
Sbjct: 798  GYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTR-----DKCSGMR 852

Query: 816  HSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG 875
            HS  L   LD+DG+ +PG  +  +DV I K        +I  P  + D      R T K 
Sbjct: 853  HS--LYDKLDEDGIISPGMRVSGDDVIIGK--------TISLPDTEDDLDAAIKRYTKKD 902

Query: 876  PD-----GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
                    ET +VD+V L  + +G+  +K  +R  R P++GDKF+SRHGQKG  G + +Q
Sbjct: 903  ASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQ 962

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF+  GI PD+I+NPH  PSRMT+G +IE L GK   + G     + F +       
Sbjct: 963  EDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV----N 1018

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V+ IS  L ++G+   G +++Y+G TG  L   +F+GP YYQ+LKHMV DK+H+R  GP 
Sbjct: 1019 VQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPV 1078

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             M+ RQP EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+  
Sbjct: 1079 QMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYHVYICNNCGLIVV 1138

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             N +  +  C  C+N   +S+ ++PYACKLL QEL SM+I PRL ++
Sbjct: 1139 ANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSIAPRLMVS 1185


>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1203

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1186 (38%), Positives = 658/1186 (55%), Gaps = 88/1186 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----SGIDPS-------- 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV     I     S  +PS        
Sbjct: 39   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQPDFVET 98

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ ++F  + + +P MT  DG +  L P   RL ++TY++P+ V++  E ++  H  +  
Sbjct: 99   IYKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEV 158

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  +   V IG++PIMLRS  C LY   E +L  LGECP D GGYFI+ G+EKVL+ QE
Sbjct: 159  TENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQE 218

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM-EKGKMYLLLNQFVK--- 240
            ++S N V +   ++ N  A      S+        S   ++M  +        Q+++   
Sbjct: 219  KMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQNKAPSSMFVRMLSRSNAKGASGQYIRATL 278

Query: 241  -----KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKAL 292
                 +IPI+VV +A+G  +D++++  +     D +   LL PS+EE     I  Q+ AL
Sbjct: 279  PYIRAEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEA--FVIQNQQVAL 336

Query: 293  EYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
            +Y+ GK + ST G     R   A  IL+   L +V         K +Y   ++ R++  +
Sbjct: 337  DYI-GK-RGSTVGFTRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCV 394

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSRF 408
            L +   DD+D+ GBKRL+L+G L+  LF  LF+ +     S VQK VD            
Sbjct: 395  LGRRPEDDRDHYGBKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------SGKDV 447

Query: 409  DLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            +L   I   +IT GL+ +L+TGN+        R G++QVL RL+F  TL H+ R++    
Sbjct: 448  NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIG 507

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++        
Sbjct: 508  REGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWST 567

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ 588
            E+ E +S   +  P S  +  NG  +G HR P      +R+LRR   +   V V  N   
Sbjct: 568  ENFEEISPAVI--PQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRNINL 625

Query: 589  RCVYIASDGGRVCRPLVIADKGISRIKEH-----HMKELLDGVRSFDDFLREGLIEYLDV 643
            + + + +D GR  RPL I +K    IK+       M+E  +    + D + +G IEY+D 
Sbjct: 626  KELRLYTDYGRCSRPLFIVEKKKLIIKKKDIIALQMRESSED-SGWHDLVAKGFIEYVDT 684

Query: 644  NEENNALIALYEGDAT-----PDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +IA+   D T     P+       TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 685  EEEETTMIAMTINDLTNSRLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 744

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 745  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 804

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR       M 
Sbjct: 805  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRENT----MG 860

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDG A PG  +  +DV I K +P+    +   P     +RY     +
Sbjct: 861  MRHGS---YDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQP-----ARYTQKDHS 912

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 913  TSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQED 972

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  GI PD+I+NPH  PSRMT+G+++E + GK     G+    + F +      TV+
Sbjct: 973  MPWNIEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGKEGDATPFTDV-----TVD 1027

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L + G+   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1028 NISKALHRCGYQMRGFERMYNGHTGRVLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1087

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC+ CGL+   N
Sbjct: 1088 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLIAIAN 1147

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             K  +  C +C+N  +   + +PYACKLLIQEL SM I PR+   E
Sbjct: 1148 LKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKE 1193


>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
          Length = 1172

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1167 (37%), Positives = 658/1167 (56%), Gaps = 77/1167 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 30   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTSGEIETPPRYLLKFEQIY 89

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---QGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I       G  + +T  +K+   IG
Sbjct: 90   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIVQDGKDSVETQHQKS--FIG 147

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 148  KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 207

Query: 203  K------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K      K  I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 208  KDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIM 267

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     D     ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 268  IVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 325

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 326  --GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 383

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVG 422
            + GNKRL+L+G L++ LF  LFK ++ EV+      + K      F+L   I    IT G
Sbjct: 384  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDK---GKDFNLELAIKTKIITDG 440

Query: 423  LERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            L  +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K++ PR L  
Sbjct: 441  LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQLHN 500

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   + +
Sbjct: 501  TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 560

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRV 600
                 V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D GR+
Sbjct: 561  ATKIFV--NGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRI 618

Query: 601  CRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIALYE 655
            CRPL+I +     +K+ H+  L +  R ++++     +  G++EY+D  EE   +IA+  
Sbjct: 619  CRPLLIVENRNLLLKKRHVDMLKE--RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMSP 676

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 677  DDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 736

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N  VA++ Y+GY+ ED++++N 
Sbjct: 737  NYHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINTIVAILCYTGYNQEDSVILNA 796

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N L   LD+D
Sbjct: 797  SAVERGFFRSVFYRSYKDSETKRLGDQEEQFEKPTRQSCQGMR-------NALYDKLDED 849

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 850  GIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRHTK-RDASTFLR--NSETGIVDQVM 906

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD+I+N
Sbjct: 907  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIIN 966

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE + GK G + G     + F +    A  V+ IS  L ++G+   G
Sbjct: 967  PHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFND----AVNVQKISTLLQEYGYHLRG 1022

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1023 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1082

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC IA+GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN  
Sbjct: 1083 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFECKGCKNKT 1142

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1143 QISQVRLPYAAKLLFQELMSMNIAPRL 1169


>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1188

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1182 (38%), Positives = 658/1182 (55%), Gaps = 87/1182 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 25   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 84

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 85   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C L+   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 145  TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLL 235
            ++S N V +   ++ N  A      S+  +     S   ++M           G+     
Sbjct: 205  KMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCT 264

Query: 236  NQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
              +++ +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q  A
Sbjct: 265  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQLVA 322

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V +       K +Y   ++ R++  
Sbjct: 323  LDYI-GK-RGATVGVTKEKRIKYAKDILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLC 380

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L +   DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 381  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKE 433

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 434  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 493

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 494  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 553

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG+ +G HR P      +R+LRR   +   V V  + +
Sbjct: 554  TENFEEISPSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIR 611

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDV 643
             + + I +D GR  RPL I D     IK+  +  L     + +D     + +G IEY+D 
Sbjct: 612  LKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDT 671

Query: 644  NEENNALIALYEGD-----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++   D            T + TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 672  EEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 731

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 732  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 791

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR       M 
Sbjct: 792  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----GSTMG 847

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDGLA PG  +   DV I K +P+    S     GQ+ SRY     +
Sbjct: 848  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDEAQGQS-SRYTRRDHS 899

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  G+ PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 1014

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L K G+   G + +Y+G TG PL A IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1015 NISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1074

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC VCGL+   N
Sbjct: 1075 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIAN 1134

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             K  +  C  CKN  +I  + +PYACKLL QEL SM I PR+
Sbjct: 1135 LKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176


>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1185

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1185 (38%), Positives = 657/1185 (55%), Gaps = 87/1185 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND-------------RIVSGIDP 76
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +              R     D 
Sbjct: 19   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGRQAEIGDV 78

Query: 77   SIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTM 134
            +  + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++ ++V     +    
Sbjct: 79   TYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTRKTEDGEEE 138

Query: 135  EK----NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             +    + V IG++PIMLRS  C L+   + +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 139  TEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIINGSEKVLIAQE 198

Query: 191  QLSKNRVIIDTDKKGN---INASVTSSTETVK---SKTVIQM--EKGKMYLLLNQFVK-- 240
            ++S N V +   ++ N     A V S  E      S   ++M    G       Q+++  
Sbjct: 199  KMSTNHVYVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRMLSRAGAKGGSSGQYIRAT 258

Query: 241  ------KIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQEKA 291
                  +IPI+VV +A+G  +D+++++ +  D   +A   LL PS+EE     I  Q+ A
Sbjct: 259  LPYIRTEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEA--FVIQNQQVA 316

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + ST G     R   A  IL+   L +V V       K ++   ++ R++  
Sbjct: 317  LDYI-GK-RGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLLLC 374

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
             +   A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD           
Sbjct: 375  AIG-GAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVD-------NGKE 426

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L+  +   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 427  INLAYAVKAKTITSGLKYSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPI 486

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++       
Sbjct: 487  GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEFLEEWS 546

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  PNS  +  NGL +G HR P+     +R+LRR   +   V V  + +
Sbjct: 547  TENFEEISPAVI--PNSTKIFVNGLWVGIHRNPELLVRTLRQLRRQVDVNTEVGVVRDIR 604

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL---DGVRSFDDFLREGLIEYLDVN 644
             + + + +D GR  RPL I +K    IK+  ++ L        S+ D + +G IEY+D  
Sbjct: 605  LKELRLYTDYGRCSRPLFIVEKQRLLIKKQDVRALQMKESSENSWYDLVSKGFIEYVDTE 664

Query: 645  EENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
            EE   +I++   D          A  DT TH EI P  ILGV   +IP+P HNQSPRNTY
Sbjct: 665  EEETTMISMTIADLVNARNNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTY 724

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            Q AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  
Sbjct: 725  QSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIAC 784

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            YSGY+ ED+++MN+SS+DRGF R I  + Y    +K      +   RP+R      R   
Sbjct: 785  YSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKQGTLIKEEFERPNRENTTGMR--- 841

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
             H S      LDDDGLA PG  +   DV I K +PL               RY    Q+ 
Sbjct: 842  -HGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPLP-----QDDNASQAQRYTKRDQST 892

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
                 E+ ++D+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED 
Sbjct: 893  CLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDM 952

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            P+++ GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV++
Sbjct: 953  PWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDN 1007

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            IS+ L K G+   G +++Y+G TG  L A+IF+GP YYQ+LKHMV DK+H+RG GP  +L
Sbjct: 1008 ISKALHKCGYQMRGFEVMYNGHTGRRLTAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 1067

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
            TRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CG++   N 
Sbjct: 1068 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGIIAIANL 1127

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            K     C  CKN  +I  + +PYACKLL QEL SM I PR+   E
Sbjct: 1128 KKNTYECRGCKNNTDIVQVHIPYACKLLFQELMSMAIAPRMFTKE 1172


>gi|119872217|ref|YP_930224.1| DNA-directed RNA polymerase subunit B [Pyrobaculum islandicum DSM
            4184]
 gi|119673625|gb|ABL87881.1| DNA-directed RNA polymerase, subunit B' [Pyrobaculum islandicum DSM
            4184]
          Length = 1127

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1174 (38%), Positives = 660/1174 (56%), Gaps = 75/1174 (6%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            + V  S +D+  P K           D++ L+  F++ +GL    + SFN F++  + KI
Sbjct: 7    LPVVTSQQDDSFPTKD----------DRWTLVERFIRDKGLANHQIKSFNDFLDKKLPKI 56

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPI-LVNI 121
            V     I + I   + L  + + +G P +   DG    + P   RL + TY+AP+ L   
Sbjct: 57   VEDFKVIETEIK-GLKLVLERIEVGWPRIKESDGSESLIYPMEARLRNATYSAPLYLTAT 115

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
             YV        T       IG +PIM++S RC L     +E  +  E P D GGYFII G
Sbjct: 116  LYVDDEPYVTETF-----YIGELPIMVKSKRCNLTRLKPSEYVKKFEDPQDFGGYFIING 170

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNIN--ASVTSSTETVKSKTVIQMEK-GKMYLLLNQF 238
            +E+V++ QE L  +R I D   K ++   A   S+    +S  V+++ K G +Y+ L+  
Sbjct: 171  SERVIISQEDLVTDRPIYDKGDKPSVKYIAKTISTGIGYRSTLVVELNKDGIIYVTLSAM 230

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
              KIP  V MKA+G+E+D++VV+ V  DP     LLPS+   AN    T+E AL+++ GK
Sbjct: 231  PVKIPFPVYMKALGLETDEDVVKAVSDDPEIQKELLPSLI-AANQIAITKEDALDFIGGK 289

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFL----ANVPVHNNNFR---PKCFYVAVMLRRMVEA 351
            V     G P   R  +A  +L   FL      VP           K   +  +++ ++E 
Sbjct: 290  V---AVGQPKPIRVEKALQLLDRYFLPHLGTTVPDEKKQQEIRLKKALMLGQIVKGLIEL 346

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L +   DDKD+V NKR+ L G L++ LF  +FK  + E++      L K     R    
Sbjct: 347  DLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQ----LEKYYARGRIPHI 402

Query: 412  QFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
            Q IVR D IT  + + L+TGN+        + G++Q+L R +++ TL ++ RV     ++
Sbjct: 403  QTIVRPDIITERVRQALATGNW-----VGGKTGVSQILDRTNYMSTLSYLRRVVSSLSRT 457

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
            +     R L P+QWG LC  +TPEG+  GLVKNLAL+  +TT  +EG +  L Y LGV  
Sbjct: 458  QPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEGEVEQLLYNLGVVP 517

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            +     E +     ++   NG ++G H  P   A  +R LRR GKI + +++ V      
Sbjct: 518  ILKARDEGIRGAEVYI---NGRLIGIHPNPDELARTVRSLRRQGKISDEINIAV--LNNA 572

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNAL 650
            VY+  DGGR+ RPL++ + G  ++ +  ++++  G  ++DD ++ G+IEYLD +EE NA 
Sbjct: 573  VYVNCDGGRIRRPLLVVENGKLKLTKEIVEKVRRGELTWDDLVKMGVIEYLDADEEENAY 632

Query: 651  IALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
            IA    D     TH+EI P  ILG +A +IPY  HNQSPRN Y+ AM KQ++G    N L
Sbjct: 633  IATDPHDDLSKYTHVEIIPSAILGAVASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFL 692

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             ++DS  ++L YP+RP++TTR +EL+GY K  AGQNA VA+++Y+GY++EDAI++NK+++
Sbjct: 693  YKLDSRGHMLYYPERPIVTTRGLELIGYSKKPAGQNAVVALLTYTGYNMEDAIILNKAAV 752

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            +RG  R +  + Y    QKY     D+I  PD +  G    +   H       LD+DG+A
Sbjct: 753  ERGMFRSVFYRTYETEEQKYPGGEEDKIEVPDSSVKGYRGPEAYSH-------LDEDGIA 805

Query: 831  APGEIIKPNDVYINKESP------LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
             P   +  N+V I K SP      LET   +     + DS     R       GE  +VD
Sbjct: 806  PPEVYVSSNEVIIGKTSPPRFYTTLETERILKE---RRDSSVAVRR-------GEKGIVD 855

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            RV +     G+  +K  +R  R PELGDKF+SRHGQKGV G I++ ED PF+E GI PD+
Sbjct: 856  RVIITESPEGNRLVKVRLRELRIPELGDKFASRHGQKGVVGMILRHEDMPFTEEGIVPDI 915

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMTVG+++E + GK G S G     + F          E + + L+K G+ 
Sbjct: 916  IVNPHALPSRMTVGQLLESIAGKIGASLGALVDATPF-----EGVKEEELRKLLMKLGYK 970

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            ++GK+++YSGITG  L A IF+G +YYQKL HMV DK+HAR  GP  +LTRQPTEGR+R 
Sbjct: 971  WDGKEVMYSGITGEKLVADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSRE 1030

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR+GEMERD LIA+GAS L++ERL+ SSD + + VC +CGL  Y + +     C    
Sbjct: 1031 GGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYLDARTNKPRCPIHG 1090

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            +    + + +PYA KLL+QEL ++ I P+L+L+E
Sbjct: 1091 DTGQFAKVIVPYAFKLLLQELIALGIYPKLELSE 1124


>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
          Length = 1921

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1174 (37%), Positives = 671/1174 (57%), Gaps = 68/1174 (5%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+ T I+KIV       
Sbjct: 777  DEITPDMWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIE 828

Query: 65   -RANDRIVSGI--DPSIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG+   P  + L+F+ + + + +    DG S  + P+  RL ++TYAAP+ V
Sbjct: 829  LQAEAQHTSGVLETPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYV 888

Query: 120  NI--EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYF 177
            ++  + ++    E+  +EK    IG+IPIMLRS  C+L    + +LA L ECPLDPGGYF
Sbjct: 889  DVMKKIIRDDGEEEKPLEKK--FIGKIPIMLRSTYCLLSIMSDRDLAELNECPLDPGGYF 946

Query: 178  IIKGTEKVLLIQEQLSKNRVIIDTDKKGN---INASVTSSTETVKSKTVIQMEKGKMYLL 234
            II G+EKVL+ QE+++ N V+  + +  +   IN       +  K  T+ Q    ++  +
Sbjct: 947  IINGSEKVLIAQEKMATNTVLEHSSRPASTLWINMMARGGKDGSKRATIGQ----RIVAI 1002

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKA 291
            L    ++IP+++V +A+G  +D+++++ +     D     ++ PS+++     I  Q+ A
Sbjct: 1003 LPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDA--FVIQEQKVA 1060

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L ++  +  R   G     R   A  IL+   L +V V +     K +++  M+ R++ A
Sbjct: 1061 LNFIGSRGARP--GVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLA 1118

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L +  +DD+D+ GNKRL+L+G L++ LF  LF+ +  E++      + K      F+L 
Sbjct: 1119 ALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDK---GKDFNLE 1175

Query: 412  QFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
              I    IT GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    + 
Sbjct: 1176 LAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRD 1235

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
             K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+
Sbjct: 1236 GKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 1295

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR-AGKIGEFVSVFVNEKQR 589
            LE ++   +       V  NG  +G H  P      +RKLRR    I   VS+  + + +
Sbjct: 1296 LEEIAPSAIGKTCKIFV--NGCWVGIHNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQ 1353

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR---SFDDFLREGLIEYLDVNEE 646
             + I +D GR+CRPLVI +KG   +K  H++ L D      S+ D +  G++EY+D  EE
Sbjct: 1354 EIRIYTDAGRICRPLVIVEKGKLLLKRSHIEFLKDKAYNRYSWQDLVLSGVVEYIDTLEE 1413

Query: 647  NNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQ 700
               +IA+   +           TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQ
Sbjct: 1414 ETVMIAMGPAEMQAAVHYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQ 1473

Query: 701  AMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIE 760
            AMG    N   RMD+L  +L YPQ+PL+ TR++E + + +L AG NA VA+ +Y+GY+ E
Sbjct: 1474 AMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQE 1533

Query: 761  DAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLL 820
            D++++N+S++ RGF R    + Y     ++     +   +P+      ++ Q + H+  +
Sbjct: 1534 DSVILNESAIQRGFFRSEFYRTYKDQEARHGMDQEEVFEKPN-----PQQCQGMRHA--I 1586

Query: 821  LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGET 880
               LDDDGL APG  +  +DV I K   L      M   GQ   RY     +      E 
Sbjct: 1587 YDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEME-GGQ--RRYTKRDASVFMRRSEY 1643

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             +VD+V +  +  G+   K  +R T+ P++GDKF+SRHGQKG CG   +QED PF+  GI
Sbjct: 1644 GIVDQVMITWNNEGNKFCKVRVRTTKTPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGI 1703

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 1000
             PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V  IS  L +
Sbjct: 1704 TPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVRKISLLLQE 1759

Query: 1001 HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            +G+ + G +++Y+G TG  L + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EG
Sbjct: 1760 YGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEG 1819

Query: 1061 RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1120
            R+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CGL+   + + K   C
Sbjct: 1820 RSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQRNKTYEC 1879

Query: 1121 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +CKN   IS +KLPYACKLL QEL SM+I PR+
Sbjct: 1880 RSCKNTTQISLVKLPYACKLLFQELMSMSIAPRM 1913


>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
          Length = 1175

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1171 (37%), Positives = 662/1171 (56%), Gaps = 85/1171 (7%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG-ID--PSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG I+  P   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTSGEIENPPRYVLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I     + G    +T  +K    IG
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIMDGKDPVETQHQK--TFIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 151  KIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 210

Query: 203  K------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K      K  I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDGKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     D     ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKI 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 440  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I +     +K+ H+  L +  R + ++     +  G++EY+D  EE   +I
Sbjct: 618  AGRICRPLLIVENRTLLLKKRHIDMLKE--RDYTNYGWQVLVASGVVEYIDTLEEETVMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMSPDDLRQERAYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 736  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      ++  +P+R      R       N L   
Sbjct: 796  ILNASAVERGFFRSVFYRSYKDSETKRMGDQEEQFEKPNRQTCQGMR-------NALYDK 848

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LD+DG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +V
Sbjct: 849  LDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRHTK-RDASTFLR--NSETGIV 905

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  G+ PD
Sbjct: 906  DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLMPD 965

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE + GK G + G     + F +    A  V+ IS  L ++G+
Sbjct: 966  IIINPHAIPSRMTIGHLIECIQGKLGANKGEIGDATPFND----AVNVQKISTLLQEYGY 1021

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR
Sbjct: 1022 HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 1081

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  C
Sbjct: 1082 DGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRSNTFECKGC 1141

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1142 KNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1182 (38%), Positives = 658/1182 (55%), Gaps = 87/1182 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 25   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 84

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 85   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C L+   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 145  TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLL 235
            ++S N V +   ++ N  A      S+  +     S   ++M           G+     
Sbjct: 205  KMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCT 264

Query: 236  NQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
              +++ +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q  A
Sbjct: 265  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQLVA 322

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L  V +  +    K +Y   ++ R++  
Sbjct: 323  LDYI-GK-RGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYIIHRLLLC 380

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L +   DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 381  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKE 433

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 434  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 493

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 494  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 553

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG+ +G HR P      +R+LRR   +   V V  + +
Sbjct: 554  TENFEEISPSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIR 611

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDV 643
             + + I +D GR  RPL I D     IK+  +  L     + +D     + +G IEY+D 
Sbjct: 612  LKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDT 671

Query: 644  NEENNALIALYEGD-----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++   D            T + TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 672  EEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 731

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 732  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINANVAIS 791

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR       M 
Sbjct: 792  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----GSTMG 847

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDGLA PG  +   DV I K +P+    S     GQ+ SRY     +
Sbjct: 848  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDEAQGQS-SRYTRRDHS 899

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  G+ PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 1014

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L K G+   G + +Y+G TG PL A IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1015 NISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1074

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC VCGL+   N
Sbjct: 1075 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIAN 1134

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             K  +  C  CKN  +I  + +PYACKLL QEL SM I PR+
Sbjct: 1135 LKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176


>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1182 (38%), Positives = 658/1182 (55%), Gaps = 87/1182 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 25   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 84

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 85   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C L+   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 145  TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLL 235
            ++S N V +   ++ N  A      S+  +     S   ++M           G+     
Sbjct: 205  KMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCT 264

Query: 236  NQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
              +++ +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q  A
Sbjct: 265  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQLVA 322

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L  V +  +    K +Y   ++ R++  
Sbjct: 323  LDYI-GK-RGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYIIHRLLLC 380

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L +   DD+D+ GNKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 381  ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKE 433

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 434  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 493

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 494  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 553

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG+ +G HR P      +R+LRR   +   V V  + +
Sbjct: 554  TENFEEISPSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIR 611

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDV 643
             + + I +D GR  RPL I D     IK+  +  L     + +D     + +G IEY+D 
Sbjct: 612  LKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDT 671

Query: 644  NEENNALIALYEGD-----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++   D            T + TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 672  EEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 731

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 732  YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 791

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR       M 
Sbjct: 792  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----GSTMG 847

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDGLA PG  +   DV I K +P+    S     GQ+ SRY     +
Sbjct: 848  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDEAQGQS-SRYTRRDHS 899

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 900  ISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 959

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  G+ PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 1014

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L K G+   G + +Y+G TG PL A IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1015 NISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1074

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC VCGL+   N
Sbjct: 1075 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIAN 1134

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             K  +  C  CKN  +I  + +PYACKLL QEL SM I PR+
Sbjct: 1135 LKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176


>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
            IM2]
 gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum aerophilum
            str. IM2]
          Length = 1127

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1168 (38%), Positives = 660/1168 (56%), Gaps = 63/1168 (5%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            + V  SP D + P +           D++ L+  F+K +GL    + SFN F++  + KI
Sbjct: 7    LPVVSSPSDGEFPTRD----------DRWALVERFIKDKGLANHQIKSFNDFLDKKLPKI 56

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPI-LVNI 121
            V  + ++V      + L  + + +G P +   DG    + P   RL + TY+AP+ L   
Sbjct: 57   VE-DFKVVETEIKGLKLVLEKIEVGWPRIKESDGSESLIYPMEARLRNATYSAPLYLTAT 115

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
             YV        T       IG +PIM++S RC L     +E A+  E P D GGYFII G
Sbjct: 116  LYVDDEPYATETF-----YIGELPIMVKSKRCNLTRLRPSEYAKRFEDPQDFGGYFIING 170

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNIN--ASVTSSTETVKSKTVIQMEK-GKMYLLLNQF 238
            +E+V++ QE L  +R I D   K ++   A   S+    +S   +++ K G +Y  L+  
Sbjct: 171  SERVIISQEDLVADRPIYDKGDKPSVRFLAKTISTGIGYRSTLTVELNKDGVIYATLSAM 230

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
              KIP  + MKA+G+E+D++VV+ V  DP     LLPS+   AN    T+E AL+Y+ GK
Sbjct: 231  PVKIPFPIYMKALGLETDEDVVKAVSDDPEIQKELLPSLI-AANQIAITREDALDYIGGK 289

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFL----ANVPVHNNNFR---PKCFYVAVMLRRMVEA 351
            V     G P   R  RA  +L   FL      VP           K   +  +++ +VE 
Sbjct: 290  V---AVGQPRPVRIERALQLLDRYFLPHLGTTVPDEKKQQEIRLKKALMLGQIVKGLVEL 346

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L +   DDKD+VGNKR+ L G L++ LF  + K  + E++      L K     R    
Sbjct: 347  HLGRRKPDDKDHVGNKRVRLVGDLMTQLFRTVLKQFLQELKSQ----LEKYYARGRIPHI 402

Query: 412  QFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
            Q IVR D IT  + + L+TGN+        + G++Q+L R +++ TL ++ RV     ++
Sbjct: 403  QTIVRPDIITERVRQALATGNW-----VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRT 457

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
            +     R L P+QWG LC  +TPEG+  GLVKNLAL+  +TT  +EG +  + Y +GV  
Sbjct: 458  QPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEGEVEHMLYNMGV-- 515

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            + +L   E    +   V  NG ++G H  P+  A  +R LRR GKI + +++ V      
Sbjct: 516  IPILKARE-EGVSGAEVYLNGRLIGVHPNPEELAKTVRGLRRQGKISDEINIAVING--T 572

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNAL 650
            VY+  DGGR+ RPL++ + G  ++    ++++  G  ++DD ++ G++EYLD +EE NA 
Sbjct: 573  VYVNCDGGRIRRPLLVVENGKLKLTREIVEKVKRGDLTWDDLVKMGVVEYLDADEEENAH 632

Query: 651  IALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
            IA        + TH+EI P +ILG IA +IPY  HNQSPRN Y+ AM KQ++G    N L
Sbjct: 633  IATDPRGNLTNYTHVEIIPSSILGAIASIIPYIEHNQSPRNQYEAAMAKQSLGLPQSNFL 692

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             ++DS  ++L YP+RP++TTR +EL+GY K  AGQNA VA+++Y+GY+IEDA+++NK+S+
Sbjct: 693  YKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASV 752

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            +RG  R +  + Y    QKY     DRI  PD +  G    +   H       LD+DG+A
Sbjct: 753  ERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVKGYRGPEAYSH-------LDEDGIA 805

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 890
             P   +  N+V I K SP     ++ +     + R  S         GE  +VD+V +  
Sbjct: 806  PPEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVR----RGEKGIVDKVIITE 861

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
               G+  +K  +R  R PELGDKF+SRHGQKGV G +++QED PF+E GI PD+I+NPH 
Sbjct: 862  SPEGNKLVKVRLRELRVPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHA 921

Query: 951  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1010
             PSRMTV +++E + GK G S G+    + F          E + + L+K G+ ++GK++
Sbjct: 922  LPSRMTVAQLLESIAGKLGASTGQLIDATPF-----EGVKEEDLRKLLLKLGYKWDGKEV 976

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1070
            +YSGITG  L A IF+G +YYQKL HMV DK+HAR  GP  +LTRQPTEGR+R GGLR+G
Sbjct: 977  MYSGITGERLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLG 1036

Query: 1071 EMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNIS 1130
            EMERD LIA+GAS L+ ERL+ SSD + + VC +CGL  Y + K     C    +    +
Sbjct: 1037 EMERDVLIAHGASALLHERLVESSDKYVMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFA 1096

Query: 1131 SMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             + +PYA KLL+QEL ++ I P+L+L+E
Sbjct: 1097 KVVVPYAFKLLLQELIALGIYPKLELSE 1124


>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
          Length = 1179

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1167 (37%), Positives = 656/1167 (56%), Gaps = 77/1167 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         +G     P   L+F+ + 
Sbjct: 37   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVETPPRYLLKFEQIY 96

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E    +     IG+I
Sbjct: 97   LSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKSVIKEGEEAIETQHQKTFIGKI 156

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 157  PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 216

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 K  I + +  S+    +  V  + +G           ++  ++    ++IPIM+V
Sbjct: 217  GKYAYKAEIRSCLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAVVPYIKQEIPIMIV 276

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R   
Sbjct: 277  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP-- 332

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 333  GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 392

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 393  GNKRLDLAGPLLAFLFRGLFKNLLKEVRIYSQKFID-------RGKDFNLELAIKTRIIT 445

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 446  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 505

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 506  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 565

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 566  ADATKIFV--NGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 623

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I + G   +K+ H   +KE       + D +  G++EY+D  EE   +IA+  
Sbjct: 624  RICRPLLIVEGGRLALKKRHIEMLKEREYNNYGWQDLVASGVVEYIDTLEEETVMIAMSP 683

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 684  EDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 743

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+  Y+GY+ ED+++MN 
Sbjct: 744  NFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNA 803

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K +    ++  +P +      R       N +   LD+D
Sbjct: 804  SAVERGFFRSVFYRSYKDQECKRSGDQEEQFEKPTKETCQGMR-------NAIYDKLDED 856

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 857  GIIAPGIRVSGDDVIIGKTITLPENDDELEGTTRRFTK-RDASTFLR--NSETGIVDQVM 913

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            +  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED  F+  G+ PD+I+N
Sbjct: 914  VTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIIN 973

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK  VS  +   G A   P      V+ IS  L ++G+   G
Sbjct: 974  PHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDTVNVQKISNLLQEYGYQLRG 1029

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G +G  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1030 NEVMYNGQSGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1089

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC IA+GA+  + ERL   SDP+ + VC +CGL+   N +     C  CKN  
Sbjct: 1090 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFECKGCKNKT 1149

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS ++LPYA KLL QEL +MNI PR+
Sbjct: 1150 QISQVRLPYAAKLLFQELMAMNIAPRM 1176


>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
            14429]
 gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
            14429]
          Length = 1141

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1136 (37%), Positives = 652/1136 (57%), Gaps = 44/1136 (3%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D+++L+  F++  GLV+  +DSFN FV   +++IV  N+ I + +   ++++ + + +G+
Sbjct: 36   DRWELVRAFIREGGLVRHQIDSFNDFVEKKLQEIVNENNIIETEVK-GLYIKLERIEVGK 94

Query: 90   PSMTVDGVSEK-LNPHMCRLSDMTYAAPI-LVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P +     SE  L P   RL ++TYAAP+ L  + YV         +++  V IG +PIM
Sbjct: 95   PRVREADASEHILYPMEARLRNLTYAAPLYLTMVLYVNDEE-----VDRQKVYIGDLPIM 149

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            +RS  C LYG    EL    E P DPGGYFII G+E+V++ QE L+ N+   D   K +I
Sbjct: 150  VRSKFCNLYGLKRQELISKLEDPDDPGGYFIINGSERVIVSQEDLAPNKPFYDKGDKASI 209

Query: 208  NASVTSSTETVKSKTVIQMEK---GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
                   +     KT + +E+   G +Y+       +IP  ++M+A+G+E+D+++V  V 
Sbjct: 210  THVAKVISIGAGYKTTVTVERHRDGIIYVTFPAIATRIPFPIIMRALGLETDEDIVLAVS 269

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP     LLPS++    +   T + AL+++  KV     G P   R  RA  +L   FL
Sbjct: 270  DDPDIQNELLPSLQFSVQI-ASTVDDALDFIGSKV---AIGQPREVRIERAKQVLDRYFL 325

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++    +    K   V  M++ ++E  L +   DDKD++ NKR+ L G L++ LF  +F
Sbjct: 326  PHLGTTEDARIKKALMVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLMAQLFRAVF 385

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGM 444
            + ++ ++++ ++      SR     L   +  D IT  +   ++TGN+        R G+
Sbjct: 386  RQVLQDIRQQLE---RHYSRGKIPSLVTLVRADIITERVRHAIATGNW-----IGGRTGV 437

Query: 445  TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
            +Q+L R + + TL H+ RV     +++     R L P+QWG LC  +TPEG+ CGLVKNL
Sbjct: 438  SQMLDRTNIMSTLSHLRRVVSNLSRTQPHFEARDLHPTQWGRLCAIETPEGQNCGLVKNL 497

Query: 505  ALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFA 564
            AL++ +T   +E  +  L Y LGV  +     E +     +L   NG ++G H  P    
Sbjct: 498  ALLSTITVGVDENEVEKLLYDLGVVPILRARKEGVKGTEVYL---NGRLIGVHTEPDKLV 554

Query: 565  DVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKEL 622
              +R++RR G+I   ++V    NE    V +  DGGR+ RPL+I + G  +++  H+++L
Sbjct: 555  STIREMRRRGQINHEINVARIRNEYLDEVRVNCDGGRLRRPLIIIENGKPKLRPEHVEKL 614

Query: 623  LDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPY 682
              G  ++ D +  G+IEYLD +EE NAL+A+   +     TH+E+ P  ++G +A +IPY
Sbjct: 615  RKGEWTWSDLISNGIIEYLDGDEEENALVAINPEEDMSKYTHMEVIPSVMIGAVASIIPY 674

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
              HNQSPRN Y+ AM KQ++G  A N   RMDS  +LL+YP+RPL+ TR IEL GY +  
Sbjct: 675  AEHNQSPRNIYEAAMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITRGIELNGYLERP 734

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+++Y+GY++EDA+++NKS+++RG  R +  + Y     +Y     DRI  P 
Sbjct: 735  AGQNAVVALLTYTGYNMEDAVILNKSAIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPS 794

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
                G +  +   H       LD+DG+ +P   +   +V I K SP    G + + T  +
Sbjct: 795  AEVRGYKGPEAYAH-------LDEDGIVSPEVFVSGGEVLIGKTSPPRFYG-VYTETVVS 846

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
             +R  S+    +G  G   +VD V +     G   +K  +R  R PELGDKF+SRHGQKG
Sbjct: 847  SARRDSSITVRRGEKG---IVDSVVVTETNEGYKLVKVKVRELRIPELGDKFASRHGQKG 903

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
            V G ++  +D PF+E GI PD+I+NPH  PSRMTVG+++E + GK     G     + F 
Sbjct: 904  VMGMMIPMQDMPFTEDGITPDIIVNPHALPSRMTVGQLLESMAGKVAALRGVMIDATPF- 962

Query: 983  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1042
                   T E + + L++ GF ++GK+++YSG+TG  L+A IF+G +YYQKL HMV DK+
Sbjct: 963  ----EGVTEEELRDLLIRSGFRWDGKEVMYSGLTGRKLEADIFIGVVYYQKLHHMVADKI 1018

Query: 1043 HARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC 1102
            HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GA+ L+ ERL+ SSD + + VC
Sbjct: 1019 HARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGAAALLRERLVESSDRYVMYVC 1078

Query: 1103 RVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              CG++ +Y+      +C    +   I  + +PYA KLL+QEL S+ I PR++  +
Sbjct: 1079 EDCGMIAWYDSNKGKPVCPIHGDKGRIVRVVVPYAFKLLLQELMSLGIYPRIEAGD 1134


>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
          Length = 1175

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1176 (37%), Positives = 661/1176 (56%), Gaps = 95/1176 (8%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-IDPSI--FLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  +   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPVRHLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDAEDPVETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IPIMVV 247
                 K  I + +  S+    +  V  M K          G+  + +  ++K+ IPIM+V
Sbjct: 213  GKYAYKAEIRSCLEHSSRPTSTLWVNMMAKSGASIKKSAIGQRIIAILPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V + +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIAL 653
            R+CRPL+I +     +K+ H+  L +  R + ++     +  G++EY+D  EE   +IA+
Sbjct: 620  RICRPLLIVEGQNLLLKKRHIDMLKE--RDYTNYGWQVLVASGVVEYIDTLEEETVMIAM 677

Query: 654  YEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
               D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 678  SPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 737

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++
Sbjct: 738  ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 797

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N S+++RGF R +  + Y     K      ++  +P R      R       N +   LD
Sbjct: 798  NASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NAIYDKLD 850

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG------- 878
            DDG+ APG  +  +DV I K        +I  P  +TD    SA + +   D        
Sbjct: 851  DDGIIAPGIRVSGDDVVIGK--------TITLP--ETDDELDSATKRFTKRDASTFLRNS 900

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  
Sbjct: 901  ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCE 960

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PD+I+NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L
Sbjct: 961  GLTPDIIINPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLL 1016

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP 
Sbjct: 1017 QEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 1076

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +    
Sbjct: 1077 EGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTF 1136

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C  CKN   IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1137 ECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRL 1172


>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
          Length = 1174

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1184 (36%), Positives = 661/1184 (55%), Gaps = 100/1184 (8%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGI---DPSIFLRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV    +I         SG     P   ++F
Sbjct: 31   VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHTSGTVETPPRYLIKF 90

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I         KT +++ D   
Sbjct: 91   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDIT--------KTLIKEGDDPI 142

Query: 139  ------VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
                    +G++PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE++
Sbjct: 143  EALSQKTFVGKVPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 202

Query: 193  SKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLL 235
            + N V + + K      K  I + +  S+    +  +  M +G           ++  +L
Sbjct: 203  ATNTVYVFSQKESKYAYKTEIRSCLEHSSRPTSTLWINMMARGGHGVRKNAIGQRIIAIL 262

Query: 236  NQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKAL 292
                ++IP+++V +A+G  SD+++++ +     DP    ++ PS++E     +  Q  AL
Sbjct: 263  PYIRQEIPVIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVAL 320

Query: 293  EYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
             ++  +  R   G     R   A  IL+   L +V V +     K +++  ++ R++ A 
Sbjct: 321  NFIGARGARP--GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYIVHRLLLAA 378

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRF 408
            L +   DD+D+ GNKRL+L+G L++ LF  LF+ +  EV    QK +D       +   F
Sbjct: 379  LGRRECDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLFSQKFID-------QGKDF 431

Query: 409  DLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
            +L   I   +IT GL+ +L+TGN+ D K+    R G++QVL RL+F+ TL H+ R++   
Sbjct: 432  NLELAIRTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFVSTLSHLRRLNSPV 491

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  +QWGM+CP +TPEG   GLVKNLALM +++   +  P++       
Sbjct: 492  GRDGKLARPRQLHNTQWGMICPAETPEGSCVGLVKNLALMAYISVGSQPSPILEFLEEWS 551

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNE 586
            +E+LE ++   + +     V  NG  +G HR P+   + ++KLRR   I    VS+  + 
Sbjct: 552  MENLEEIAPSAIQDATKIFV--NGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDI 609

Query: 587  KQRCVYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDV 643
              R + I +D GR+CRPL+I +     +K+ H   +KE       + D +  G++EY+D 
Sbjct: 610  SDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKEREYNNYGWQDLVASGVVEYIDT 669

Query: 644  NEENNALIA-----LYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
             EE   +++     L E       TH EI P  ILGV A +IP+P HNQSPRNTYQ AMG
Sbjct: 670  LEEETIMLSMSPDQLQESGYCSSYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 729

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG NA VA+ SY+GY+
Sbjct: 730  KQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYN 789

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSN 818
             ED++++N+ ++DRGF R +  + Y     K      +   RPD       RM V     
Sbjct: 790  QEDSVILNEGAVDRGFFRSVFYRSYKDSESKKGLDQEELFERPDPNHVQGMRMAVYDK-- 847

Query: 819  LLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD- 877
                 LDDDG+ APG  +  +DV I K        ++  P  + +   ++ R T +    
Sbjct: 848  -----LDDDGIIAPGTRVSGDDVLIGK--------TLTLPENEDELDAQAKRFTKRDCSV 894

Query: 878  ----GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
                 ET ++D+V +  ++ G    K  +R  + P++GDKF+SRHGQKG CG   +QED 
Sbjct: 895  FMRRSETGIIDQVMVTINQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGIRYRQEDM 954

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            PF+  GI PD+I+NPH  PSRMTVG +IE L GK  VS  +   G A   P   A  V  
Sbjct: 955  PFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVRK 1010

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            IS+ L  +G+   G +++++G TG  L A IF+GP YYQ+LKHMV DK+H+R  GP  +L
Sbjct: 1011 ISDLLQDYGYHLRGNEVLFNGHTGRKLNAQIFIGPTYYQRLKHMVDDKIHSRARGPVQIL 1070

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
             RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL   SDP+ V VC +CGL+   N 
Sbjct: 1071 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEISDPYRVHVCNICGLIAIANL 1130

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            +     C  CKN   IS +++PYACKLL QEL SM+I PR+ + 
Sbjct: 1131 RNNTFECRGCKNKTQISQVRMPYACKLLFQELMSMSIAPRMMIT 1174


>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
 gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
          Length = 1118

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1149 (37%), Positives = 657/1149 (57%), Gaps = 65/1149 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + + +GLV+QHLDS+N F+  G++++V     +   I P   ++F  +R+G+
Sbjct: 13   DLWVVMESYWQEKGLVRQHLDSYNAFIERGLQEVVNEFGGVKPDI-PDFEVKFGRIRVGE 71

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P      G  + L P   R+ ++TY+AP+ +  I  V+G   E       +V IG +PIM
Sbjct: 72   PEFQEAHGQRKPLYPMDARIRNLTYSAPLYLEMIPVVKGIEQEPV-----EVRIGELPIM 126

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
            L+S  C LYG  + EL +LGE P DPGGYFII G+E+V++  E ++ NR +++ D++   
Sbjct: 127  LKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQER 186

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A   S     ++   ++  K G +Y+ +    K +  + VM+A+G+E D+++V  VG 
Sbjct: 187  YLAKCFSYRHGYRALITVERRKDGILYVSIPNVPKPVKFVYVMRALGLEKDKDIVDAVGN 246

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE---GRAFSILRDV 322
            DP    +L  ++E+ +  DI TQ +ALE +          +P   RE    RA  ++ + 
Sbjct: 247  DPEVQQVLFDNLEDAS--DIQTQMEALELI------GRLVAPGQAREYRLKRAEYVIDNN 298

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L ++ V+  +   K +Y+ +M  +++E  L +   DDKD+  NKRL L+G L+  LF  
Sbjct: 299  LLPHMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYANKRLRLAGDLLKDLFRV 358

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRF 437
             F  ++ ++Q  +     +      F      +R+SI     T  +E +L+TG +     
Sbjct: 359  AFAQLVKDIQYQMTKTYQRKGEKYTFGNIHRFIRNSIRPDVLTERIEHSLATGAW----- 413

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
               R G++Q+L R +++ TL H+ RV+   ++ +     R L  + WG +CP +TPEG  
Sbjct: 414  PGGRTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPN 473

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLALM  +TT   E  +      LG+  +E+       +P  + V  NG+++G  
Sbjct: 474  CGLVKNLALMAQITTAVPEKEVREYLMKLGIIPIEVRR----PSPELWRVYLNGVLIGTI 529

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
               K   + ++K RR+GKI + ++V   E  + VY+ SD GRV RPL+I + G  ++   
Sbjct: 530  EDGKALVERIKKDRRSGKISDVINVAYYEDIKEVYVNSDDGRVRRPLIIVENGKPKLTRE 589

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
            H++ +  G   + D ++ G+IEYLD  EE NA +A++  + T + TH+E+ P  ILG+ A
Sbjct: 590  HVEAVKQGRLKWSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPA 649

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             L+PYP HN +PRNTY   M KQ++G    N   R+D+  +LL YPQ PL+ +R ++ VG
Sbjct: 650  SLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVNSRIMKAVG 709

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            Y+   AGQN  VA+++Y GY++EDAI++NK+S++RG  R    + Y A  +KY    +DR
Sbjct: 710  YEDRPAGQNFVVAILAYQGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDR 769

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGS 854
               PD T  G    +  ++ N     LD+DGL  P   +   DV I + SP   LE RG 
Sbjct: 770  FEIPDPTVRGYRGEK--YYRN-----LDEDGLIFPESKVDGKDVLIGRTSPPRFLEERGG 822

Query: 855  ----IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                I+    +T    R +         E  +VD+V +    +G   +K  +R  R PEL
Sbjct: 823  LGGMILQERRETSVAVRPS---------EKGIVDKVIITETGDGTKLVKVTVRDLRIPEL 873

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK   
Sbjct: 874  GDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVAS 933

Query: 971  SCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
              GR   G+AF GEP       E + + L + GF +NG++++Y GITG  L A IF+G I
Sbjct: 934  LKGRRVDGTAFIGEPE------ERLRKELEELGFKHNGREVMYDGITGKRLVADIFIGVI 987

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQ+L HMV DK+HAR  GP  +LT+QPTEGRAR GGLR GEMERD L+ +GA+ML+ ER
Sbjct: 988  YYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIER 1047

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L+  SD  EV VC  CG +   + +     C  C   + IS +++ YA KLL+ EL++M 
Sbjct: 1048 LLEESDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMI 1107

Query: 1150 IVPRLKLAE 1158
            I P+L L E
Sbjct: 1108 IRPKLNLTE 1116


>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
          Length = 1178

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1176 (37%), Positives = 659/1176 (56%), Gaps = 87/1176 (7%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI---------VSGIDPSI--FLRF 82
            L+  +   +GLV+Q LDSF+ F+   +++IV  + +I            I+  +   L+F
Sbjct: 32   LINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTTGEIENPVRHLLKF 91

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     
Sbjct: 92   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPVETQHQKTF 151

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 152  IGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 211

Query: 201  TDK------KGNINASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IP 243
            + K      K  I + +  S+    +  +  M K          G+  + +  ++K+ IP
Sbjct: 212  SMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIP 271

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IMVV +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++     
Sbjct: 272  IMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFI----- 324

Query: 301  RSTFGSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
              T G+ P   +E R   A  IL+   L +V + +     K +++  M+ R++ A L + 
Sbjct: 325  -GTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 383

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQ 412
             +DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L  
Sbjct: 384  ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLEL 436

Query: 413  FIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
             I    IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  
Sbjct: 437  AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG 496

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K++ PR L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+L
Sbjct: 497  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 556

Query: 532  ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRC 590
            E ++   + +     V  NG  +G HR P      +RKLRR   I    VS+  + + R 
Sbjct: 557  EEIAPSAIADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDRE 614

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
            + I +D GR+ RPL+I +     +K+ H   +KE       + + +  G++EY+D  EE 
Sbjct: 615  IRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEE 674

Query: 648  NALIALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
              +IA+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGK
Sbjct: 675  TVMIAMSPDDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 734

Query: 700  QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
            QAMG    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ 
Sbjct: 735  QAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQ 794

Query: 760  EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNL 819
            ED++++N S+++RGF R +  + Y     K      ++  +P R      R       N 
Sbjct: 795  EDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGMR-------NA 847

Query: 820  LLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDG 878
            +   LDDDG+ APG  +  +DV I K   L ET   + S T +   R  S        + 
Sbjct: 848  IYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLR----NS 903

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  
Sbjct: 904  ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCE 963

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PD+I+NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L
Sbjct: 964  GLTPDIIINPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLL 1019

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP 
Sbjct: 1020 QEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 1079

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +    
Sbjct: 1080 EGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTF 1139

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C  CKN   IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1140 ECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRL 1175


>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/1184 (38%), Positives = 659/1184 (55%), Gaps = 91/1184 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 24   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
            I+ + F  + + +P MT  DG +  L P   RL ++TY+AP+ V++    ++  H  +  
Sbjct: 84   IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C LY   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 203

Query: 191  QLSKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--L 234
            ++S N V +   ++ N  A V              ST  V+  S+T  +      Y+   
Sbjct: 204  KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
            L     +IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 264  LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQQVA 321

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 322  LDYI-GK-RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
             L + A DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD           
Sbjct: 380  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKD 432

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 433  VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  SQWGM+CP +TPEG+ACGLVKNLALM ++T      P++      G
Sbjct: 493  GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG  +G HR P      +R+LRR   +   V V  + +
Sbjct: 553  TENFEEISPAVI--PQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIR 610

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVRSFDDFLREGLIEYL 641
             + + I +D GR  RPL I +K    IK   ++ L       DG   + D + +G IEY+
Sbjct: 611  LKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDG--GWHDLVAKGFIEYI 668

Query: 642  DVNEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPR 690
            D  EE   +I++   D          A  +T TH EI P  ILGV A +IP+P HNQSPR
Sbjct: 669  DTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 728

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD++ Y+L YPQ+PL+TTR +E + + +L AG NA VA
Sbjct: 729  NTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 788

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            +  YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RPDR    A  
Sbjct: 789  IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ANT 844

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
            M + H S      LDDDGLA PG  +   DV I K +P+  +     P     +RY    
Sbjct: 845  MGMRHGS---YDKLDDDGLAPPGTRVSGEDVVIGKTTPI-AQDEAQGPA----ARYTRRD 896

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             +      ET +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    Q
Sbjct: 897  HSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 956

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      T
Sbjct: 957  EDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----T 1011

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V++IS+ L K G+   G + +Y+G TG  L + IF+GP YYQ+LKHMV DK+H+RG GP 
Sbjct: 1012 VDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPV 1071

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + + VC  CGL+  
Sbjct: 1072 QILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAI 1131

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N K  +  C  CKN  +I  + +PYACKLL QEL SM I PR+
Sbjct: 1132 ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRM 1175


>gi|253741841|gb|EES98701.1| DNA-directed RNA polymerase subunit B' [Giardia intestinalis ATCC
            50581]
          Length = 1239

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/838 (45%), Positives = 537/838 (64%), Gaps = 24/838 (2%)

Query: 333  NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQ 392
            N+ PK  Y+A M+RR +         D KD+VGNK++E +G L+ L+F+D FKT+++ + 
Sbjct: 414  NWLPKAVYLATMVRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMA 473

Query: 393  KTVDIIL----SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL 448
            + VD+IL    ++ +  + +D+   +    IT      +STGN+ ++R  + R G++QVL
Sbjct: 474  RKVDVILRSDKNRGTDLTNYDVVSLVDPSIITRAFNSAISTGNWKIERIGVDRVGVSQVL 533

Query: 449  ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMT 508
            +RLS+I TLG +TR+S  F+K+ K SGPR L  SQ G+ CP DTPEGE+ G+VKNL++M 
Sbjct: 534  SRLSYISTLGQVTRLSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMA 593

Query: 509  HVTTDEEEGPLISLCYCLGVEDL-ELLSGEELHNPNSFLVIFNGLILGKHRRP--KCFAD 565
             ++ DE    +  L   +GVEDL    SG+       ++V  NG I G   +   K F  
Sbjct: 594  RISKDENADSISKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFII 653

Query: 566  VMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
             +R  RR G I    S   N++ + VYI  D GR CRPL+I + G  ++  + ++ L++ 
Sbjct: 654  TLRTFRRKGYISYLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLKLTLNDIELLVNN 713

Query: 626  VRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHH 685
             + F DF+ EG +EYLDVNE  NA IA+   D TP  TH EIE +T+LG + GLIPYPHH
Sbjct: 714  QKCFVDFIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLLGYVVGLIPYPHH 773

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRN YQC+MGKQA G IAFNQ  R ++ ++LL YPQRPL +T+ ++L GY++L AGQ
Sbjct: 774  NQSPRNCYQCSMGKQASGAIAFNQFERFETAMFLLDYPQRPLTSTKILKLTGYERLPAGQ 833

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA----INQKYANSTSDRILRP 801
            NATV VMSYS +DIEDA+++N+S++DRGFGRC + +  +A       K  + T D +L  
Sbjct: 834  NATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELNSTGSKSVDGTKDVLL-- 891

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
               GP  + ++     +     ++DDGL A G  +K  D+ INK   +     +      
Sbjct: 892  ---GPPKDHLKQYESYH----AVEDDGLCAVGAHLKTGDIVINKGRHVTNIPGLSDGPEA 944

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             ++  +S  ++ K P      +D+V + ++ +G+L IK L R  RRPE+GDKFSSRHGQK
Sbjct: 945  AETLIKSP-ESLKSPLETITYIDKVLVTTNNDGNLLIKVLTREPRRPEVGDKFSSRHGQK 1003

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            GVCG IV Q D PF+ +GI PDLIMNPHG+PSRMTV K++ELL  K+    G    G+ F
Sbjct: 1004 GVCGLIVSQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSSCFRGEQTDGTCF 1063

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
               +   + +  + ++L   GFSY+GKD++YSG+TG  +  YIF GPIYYQKLKHMV DK
Sbjct: 1064 RTKTDE-EFIAELYDSLRAAGFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDK 1122

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +H+RG+GP  MLTRQPTEGR  +GGLR+GEMERDC I+YGAS L+ ER M+SSD F   V
Sbjct: 1123 IHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDEFLAYV 1182

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            C  CGL  Y   +  A  C TC++G ++  +++PYA KL+IQEL SM ++ R++L ++
Sbjct: 1183 CEACGLFSY--ERNGALWCPTCQSGKDVVKIRIPYAAKLMIQELISMGVLVRMQLEDS 1238



 Score =  209 bits (532), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 11/293 (3%)

Query: 23  APVKSV-VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR 81
           +PV SV +D+++L+  +L    + K HLDSFN+ ++  I  I++ N  +V    P  +LR
Sbjct: 12  SPVHSVAMDRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENPLLVVAKHPHFYLR 71

Query: 82  FKDVRIGQPSM-------TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            + V + Q S        +  G +  L PH CR  +MTYAAPI +++   + S+      
Sbjct: 72  IEKVDVKQVSHGSSKSPGSSTGGNVGLTPHECRQRNMTYAAPITIDVR-CRASNKSSVQY 130

Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            K D+ IG IPIMLRS RC+L  K   + A   ECP DPGGYFI++G EK +L+ EQ++ 
Sbjct: 131 YK-DICIGYIPIMLRSNRCILANKSRKQQAFFQECPDDPGGYFIVRGAEKSILLAEQITM 189

Query: 195 NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGM 253
           NR+++  +  GNI  +V S+T   KS+  +  +  K YL+ N+F KK IPI+ + KAMG 
Sbjct: 190 NRIVLGRNTDGNIEVTVASNTTERKSRCAVLYKNKKFYLIHNKFNKKPIPIVTIFKAMGF 249

Query: 254 ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +D  V+ ++G D  +   +  S++EC+N  IYTQE+AL+YL  ++   T+ +
Sbjct: 250 VNDVTVLSLIGTDQLFLDYMSLSVQECSNDKIYTQEQALKYLADRIVVRTYAN 302


>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1140

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1162 (37%), Positives = 660/1162 (56%), Gaps = 67/1162 (5%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFK 83
            + ++  F + +GLV+Q LDSF+ FV T +++++  +  I+    P+        I +RF 
Sbjct: 11   WLIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIVQSAPTAGIETQKRITVRFG 70

Query: 84   DVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
             + + +P +    DG +  + P+  R+ D+TYA+P+ +++   + + +E   ++K+    
Sbjct: 71   QIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDV--TKETISELGVVDKHKYSR 128

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V  G +P+MLRS  CVLYG  + +L  LGECP D GGYFI+ G+EKV++ QE+++ N V 
Sbjct: 129  VPFGSLPVMLRSSYCVLYGLSDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVY 188

Query: 199  IDTDKKGNIN---ASVTSSTE-TVKSKTVIQME----KGKMYLLLNQFVKKIPIMVVMKA 250
            +    +       A + S  E + ++ + + M+     G + + L    + IP+ V+ +A
Sbjct: 189  VFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGVIRVSLPLVKQDIPLFVLYRA 248

Query: 251  MGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            +G  SD+E++  +    D     LL  SIEE   + +  Q  AL+Y+ GK + +  G+P 
Sbjct: 249  LGFLSDKEIIDHILYEDDDEMFELLKESIEE--GMVVQDQNVALDYI-GK-RSAPVGTPQ 304

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A  +L    L ++         K +++  +++R++   L +   DD+D+ G KR
Sbjct: 305  EKRIIIAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRKNPDDRDHYGKKR 364

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            ++LSG L++ LF  LFK + ++  + +   +        F+++  +    IT G    L+
Sbjct: 365  MDLSGPLLASLFRTLFKKLCADTTRHMQKCIEN---GREFNIALGLKASIITQGFRYALA 421

Query: 429  TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            TGN+ D  +    R G+ QVL R +F+ TL H+ RV+   EK  K++ PR L  + WGM+
Sbjct: 422  TGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMV 481

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP +TPEG+ACGLVKNL+LM +++     GPL+      GVE LE +S  +L+      V
Sbjct: 482  CPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTPQLNAATKIFV 541

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG+ +G H  P      ++ LRR+ ++ + VS+  + +++ + I SD GR CRPL++ 
Sbjct: 542  --NGIWVGIHSDPVYLIKSLKLLRRSLEMDKEVSIVRDIREKEIRIQSDAGRPCRPLLVV 599

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIA-----LYEGDATPDT 662
                  I    +K L  G   +D+ + EG IE+LDV EE  ++IA     L E     D 
Sbjct: 600  KNNELVITPEDIKRLKRGEIKWDNLISEGFIEFLDVEEEEMSMIAMNTKALEESKKASDV 659

Query: 663  ----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
                TH EI P  ILG+ A  IP+P HNQSPRNTYQ AMGKQAMG  A N L RMD+L  
Sbjct: 660  KISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSN 719

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            +L YPQ+PL+TT+++E + + +L +GQNA VA+  YSGY+ ED+I+MN+S++DRG  R  
Sbjct: 720  ILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSF 779

Query: 779  VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
              + YT          ++   +P R         V+   NL    LD+DGL +PG  +  
Sbjct: 780  FYRTYTDQESMSRPGVNEEFCKPSRG-------TVLRMKNLNYNKLDEDGLISPGTRVTG 832

Query: 839  NDVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
            +DV I K +P+    R +  +P         + R+T      ET +VD V + ++K+G  
Sbjct: 833  DDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRT------ETGIVDTV-IVTNKDGYK 885

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
              K  +R  R P++GDKF+SRH QKG  G  ++QED PF+  GI PD+I+NPH  PSRMT
Sbjct: 886  FSKIKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMT 945

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            +G +IE L GK     G     + F +      TV  IS  L  +GF   G +++Y+G+T
Sbjct: 946  IGHLIECLLGKVSAMSGEEGDATPFSDM-----TVNEISAKLKSYGFQQRGLEVMYNGMT 1000

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  L+A +F GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERDC
Sbjct: 1001 GRKLRAQVFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDC 1060

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +I++GAS  + ERLM  SD +   VC  CGLL     K+    C  C N  N+S +++PY
Sbjct: 1061 IISHGASAFLKERLMDVSDAYSCFVCNFCGLLAMGGSKVNE--CKGCNNTTNVSMIEIPY 1118

Query: 1137 ACKLLIQELQSMNIVPRLKLAE 1158
            A KLL+QEL  MNI PR++  E
Sbjct: 1119 AFKLLVQELMGMNIAPRIRFEE 1140


>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
          Length = 1175

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1171 (37%), Positives = 659/1171 (56%), Gaps = 79/1171 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-IDPSI--FLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  +   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIENPVRHLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + ++    +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 204  -----KGNINASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IPIMVV 247
                 K  I + +  S+    +  +  M K          G+  + +  ++K+ IPIM+V
Sbjct: 213  GKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V + +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P      +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+ RPL+I +     +K+ H   +KE       + + +  G++EY+D  EE   +IA+  
Sbjct: 620  RISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSP 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  EDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N 
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N +   LDDD
Sbjct: 800  SAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NAIYDKLDDD 852

Query: 828  GLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            G+ APG  +  +DV I K   L ET   + S T +   R  S        + ET +VD+V
Sbjct: 853  GIIAPGIRVSGDDVVIGKTITLPETDDELDSTTKRFTKRDASTFLR----NSETGIVDQV 908

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  G+ PD+I+
Sbjct: 909  MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIII 968

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   
Sbjct: 969  NPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLR 1024

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GG
Sbjct: 1025 GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 1084

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126
            LR GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +     C  CKN 
Sbjct: 1085 LRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNK 1144

Query: 1127 DNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
              IS ++LPYA KLL QEL +MNI PRL +A
Sbjct: 1145 TQISQVRLPYAAKLLFQELMAMNIAPRLMVA 1175


>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
          Length = 1214

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1216 (36%), Positives = 670/1216 (55%), Gaps = 116/1216 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIF--- 79
            D + ++  + + +GLV+Q L+SFN F+   +++IV  N  I+       +G +       
Sbjct: 19   DYWTIISSYFEGKGLVRQQLESFNEFIENTLQEIVDENPLIILDQHAQFTGKEGDELRRH 78

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTE---- 130
             LRF  + + +P+ T  DG++  + P   RL ++TY+AP+ V IE   +V     E    
Sbjct: 79   QLRFGQIYLARPTTTESDGIAAPMFPQEARLRNLTYSAPLYVEIERRTFVAAGADEDPLD 138

Query: 131  -----------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
                       +  +EK    IG++P+M+RS  C L    +  L  L ECP D GGYF++
Sbjct: 139  TEWQPLLDAYGEPVVEKTKAFIGKVPVMVRSHFCHLENLPDESLYHLKECPYDSGGYFVV 198

Query: 180  KGTEKVLLIQEQLSKNRV-IIDTDKKGNINASVTSSTE---TVKSKTVIQM-------EK 228
            KG+EKVL+ QE+++ N+V +          A+VTS  E    + S+T ++M         
Sbjct: 199  KGSEKVLIAQERMAANQVYVFRKQSPYTYFATVTSQMERGGKMPSETEVRMYPRSSGGTT 258

Query: 229  GKMYLLLNQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLD 284
            G +  +   ++K  IPI++V +A+G+ +D ++++ +     D +   +L P +EE     
Sbjct: 259  GSVIHVRLPYIKVPIPIVIVFRALGIIADSDILEHICFNMGDTQMLEMLRPCVEEA--FA 316

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I ++E AL+++ G+      G+    R+  AF IL+  FL +V V       K +++  M
Sbjct: 317  IQSRETALDFI-GRRHNKDIGTR-MQRQLVAFDILQKEFLPHVSVSEGFESKKAYFLGYM 374

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R+  A LN+  +DD+D+ GNKR++L+G L++ LF  LFK +   V + +   + K   
Sbjct: 375  IHRLCSAALNRRDLDDRDHFGNKRMDLAGPLLANLFRGLFKNLTKRVHRHLTTCIEK--- 431

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            +  F  S+ +    IT G    ++TGN+     +  R G++QVL R ++  TL H+ R +
Sbjct: 432  NRPFVFSEALQPSIITDGFRYAIATGNWGTGTNR--RVGVSQVLNRYTYASTLSHLRRTN 489

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
               ++  K + PR L  + WGM+CP +TPEG ACGLVKNLAL+++++      P++    
Sbjct: 490  TPIDRGSKATKPRQLHNTHWGMVCPAETPEGAACGLVKNLALLSYISVGSYAAPVMEFLE 549

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
              G+ED      E  HNP +  V  NG+ +G HR        + ++RR G++   VS+  
Sbjct: 550  EWGLED----QSEFQHNPGATKVFVNGVWMGVHRNAGTLYANLLQMRRGGQLKHEVSIVR 605

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGIS--RIKEHHMKE---LLDGVR------SFDDFL 633
            + ++R + + +D GRVCRPL+I D+     +IK+ H++    LL+G        ++ + L
Sbjct: 606  DIRERELRLCTDAGRVCRPLLIVDQRTQSLKIKKSHIERTEILLEGGEDIATGSAWIELL 665

Query: 634  REGLIEYLDVNEENNALIALYEGD-----------------------------------A 658
             +G+IEY+D  EE   LIA+   D                                    
Sbjct: 666  NDGVIEYVDAAEEETILIAMTSEDLVNARTASGKDELVRQRAAHNLDHFDPAARVKSTNW 725

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
            + + TH+EI P  ILGV   +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  
Sbjct: 726  SQNYTHMEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGVHLTNYQLRMDTMAN 785

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            +L YPQ+PL TTR++E + + +L AGQNA VA+M YSGY+ ED+++MN+SS+DRG  R +
Sbjct: 786  ILYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSL 845

Query: 779  VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
              + YT   +       + I +PDR     + +++   S+     LD DGL AP   +  
Sbjct: 846  YYRSYTDAEKMTGMEKVETIEKPDR----KDTLRMKMGSSDRYAKLDIDGLIAPATNVNG 901

Query: 839  NDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
            +D+ I K +P+      +   GQ  S +     +      E  VVD+V L ++ +G   +
Sbjct: 902  DDIIIGKTAPIPEESEEL---GQRTSLHTKRDVSTPLKSTEQGVVDQVMLSTNGDGHKFV 958

Query: 899  KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
            K  IR TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G
Sbjct: 959  KIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIG 1018

Query: 959  KMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGC 1018
             ++E L  K     G     + F E      TVE +S+ L + G+   G +++Y G TG 
Sbjct: 1019 HLVECLLSKLSTMTGSEGDATPFTEL-----TVEKVSKFLRQRGYQSRGLEVMYHGHTGR 1073

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
             LQA I+ GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERDC+I
Sbjct: 1074 KLQAQIYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMI 1133

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYAC 1138
            ++G +  + ER+  SSD F V VC  CGL+   N K +   CS C+N   IS + +PYA 
Sbjct: 1134 SHGIAAFLKERMYDSSDGFRVHVCDQCGLMAIANLKKQEFHCSVCRNSTQISQIYIPYAA 1193

Query: 1139 KLLIQELQSMNIVPRL 1154
            KLL QELQ+MNI  R+
Sbjct: 1194 KLLFQELQAMNIAVRM 1209


>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
 gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Staphylothermus marinus F1]
          Length = 1156

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1178 (37%), Positives = 665/1178 (56%), Gaps = 87/1178 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIG- 88
            D + ++  F +  GLV+QHLDS+N F++  + +I+  +  I   I  +  L  K  RIG 
Sbjct: 12   DLWTVMKSFFEEFGLVRQHLDSYNRFIDHLLPEIISEHKEIT--ISGNRKLLIKGYRIGS 69

Query: 89   QPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            +P + T++G    + P  CRL + TYA PI + +        E    ++ ++ +  +P+M
Sbjct: 70   EPKIRTIEGFERTVTPLECRLRNFTYAVPIYLKV----ALQDETGIYKEQEIKLMDLPVM 125

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            L+S    L      EL  +GE P DPGGYFII G+EKVL+ QE L+ N +++D   +G+ 
Sbjct: 126  LKSKIDPLSKMTAEELVAIGEDPKDPGGYFIINGSEKVLVAQEDLASNNILVDYASEGSS 185

Query: 208  N---ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
                A V S  +  +S+ VI+  K  ++   N    +IP++++M A+G+ S+ E+   V 
Sbjct: 186  ATHIAKVISVAKGRRSQLVIERRKDGIFYA-NLHGHRIPVVILMTALGLASELEITYAVS 244

Query: 265  RDPRYSALLLPSIEECAN----LDI------------------YTQEKALEYLEGKVKRS 302
             DP     LLPSI +  +    L+I                   T E AL+Y+  ++   
Sbjct: 245  LDPDLQTYLLPSIMQAQSVFPRLEIPENASPEEQKRIEEEHRRKTIETALDYIGARI--- 301

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNN--FRPKCFYVAVMLRRMVEAMLNKDAMDD 360
              G P  +R  RA   L +  L ++         R K +++  M+ +++E ++++   DD
Sbjct: 302  AIGRPREERIRRAQRALDEYLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELIVDRRKPDD 361

Query: 361  KDYVGNKRLELSGQLVS-LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            KD+  NKRL+L+G L++ L+  +L    I EV+ +++   SK     R DL   I    +
Sbjct: 362  KDHYRNKRLKLAGDLLAQLVRHNLVTYFIREVKSSIERSYSK---YGRLDLKLVIKPGML 418

Query: 420  TVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
            T  +   ++TGN+   +      G++Q+L R + + TL H+ RV    ++++     R L
Sbjct: 419  TDRILHAMATGNWPGGK-----TGVSQLLDRTNLMSTLSHLRRVVSPLKRTQPHFEAREL 473

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY-CLGVEDLE------ 532
             P+QWG +CP +TPEG   GLVKNLALM HV+    E  +  + Y  LGV++L+      
Sbjct: 474  HPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIEPILYRKLGVKNLDEIIEEI 533

Query: 533  --LLSGEELHNPN---SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV--FVN 585
               ++GE    P+      V  NG ++G H   K  A  +R LRR GKI   V+V    +
Sbjct: 534  KKAITGEVEEYPDYTSWSRVYLNGRLIGYHPDGKKLAQEIRNLRRRGKISVEVNVAHIRD 593

Query: 586  EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNE 645
            E    VYI +D GR+ RPL++ + G  ++K  H+ +L  G   F D ++ G+IEYLD +E
Sbjct: 594  EHLNEVYINTDAGRIRRPLLVVENGKLKLKPEHIAKLKSGEWKFSDLVKRGIIEYLDADE 653

Query: 646  ENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
            E  A IAL     TP+ TH+EI    I+G+ A +IPY  HNQSPRN+Y+ AM KQ++G  
Sbjct: 654  EEEAYIALTPDQITPEHTHMEIWTPAIMGITASIIPYAEHNQSPRNSYEAAMAKQSLGLY 713

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
            + N   RMD+  +LL YPQ+PL+ TR +E+ GY++  AGQN  VAVMS++GY+IEDA++M
Sbjct: 714  SANFQQRMDTRGHLLHYPQKPLVQTRAMEVNGYNERPAGQNMVVAVMSFTGYNIEDALIM 773

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT-----GPGAERMQVVHHSNLL 820
            NKSS+DRG  R    + YT +  +Y     DRI+ P        GP A            
Sbjct: 774  NKSSVDRGLARSTFFRLYTTVEYRYPGGQEDRIMIPPSNVRGYRGPKAYEK--------- 824

Query: 821  LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGET 880
               LD+DG+ +P   +K  DV I K SP     +     G   +R  ++  T  G  G  
Sbjct: 825  ---LDEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVGAGITRQDASVVTRHGEKG-- 879

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             +VD V + +D +G+  +K  +R  R PELGDKF+SRHGQKGV G +V Q+D PF+E GI
Sbjct: 880  -IVDVVMVTTDIDGNRLVKVRVRDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGI 938

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 1000
             PDLI+NPH FPSRMTVG++IE + GKA    GRF   + F     H + ++++  TL +
Sbjct: 939  VPDLIINPHAFPSRMTVGQLIESIAGKAAALEGRFVDATPF-----HKEPIDNLMITLKR 993

Query: 1001 HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            HG+  +G + +Y G TG  L+  IF+G +YYQKL HMV DK+HAR  GP  +LTRQPTEG
Sbjct: 994  HGYPMSGYETMYDGRTGEILKTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEG 1053

Query: 1061 RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1120
            RA+ GGLR GEME DCL+ +GAS+L+ E+++  SD   + VC +CG +GYY+      +C
Sbjct: 1054 RAKEGGLRFGEMEVDCLVGHGASLLLKEQMLDKSDKTTIYVCELCGHIGYYDRIRGKYMC 1113

Query: 1121 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
               K+   +  +++ YA KLL+QEL SM I+PRLKL +
Sbjct: 1114 PIHKDKGKLKPVEVSYAFKLLVQELMSMCIMPRLKLED 1151


>gi|308161806|gb|EFO64240.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia P15]
          Length = 1239

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/840 (45%), Positives = 538/840 (64%), Gaps = 28/840 (3%)

Query: 333  NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQ 392
            N+ PK  Y+A M+RR +         D KD+VGNK++E +G L+ L+F+D FKT+++ + 
Sbjct: 414  NWLPKAVYLATMIRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMV 473

Query: 393  KTVDIIL----SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL 448
            + VD IL    ++ +  + +D+   +    IT      +STGN+ +++  + R G++QVL
Sbjct: 474  RKVDNILRSDRNRGTDLTNYDIVSLVDSSIITRAFNTAISTGNWKIEKIGVDRVGVSQVL 533

Query: 449  ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMT 508
            +RLS+I  LG +TR+S  F+K+ K SGPR L  SQ G+ CP DTPEGE+ G+VKNL++M 
Sbjct: 534  SRLSYISALGQVTRLSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMA 593

Query: 509  HVTTDEEEGPLISLCYCLGVEDL-ELLSGEELHNPNSFLVIFNGLILGKHRRP--KCFAD 565
             ++ DE    +  L   +GVEDL    SG+       ++V  NG I G   +   K F  
Sbjct: 594  RISKDESTDSISKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFII 653

Query: 566  VMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
             +R  RR G I    S   N++ + VYI  D GR CRPL+I + G   +  + ++ L+D 
Sbjct: 654  TLRTFRRKGYISYLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLMLTRNDIELLMDN 713

Query: 626  VRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHH 685
             + F D + EG +EYLDVNE  NA IA+   D TP  TH EIE +T+LG + GLIPYPHH
Sbjct: 714  QKCFVDLIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLLGYVVGLIPYPHH 773

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRN YQC+MGKQA G IAFNQL R ++ ++LL YPQRPL +T+ ++L GY++L AGQ
Sbjct: 774  NQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQRPLTSTKILKLTGYERLPAGQ 833

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT----AINQKYANSTSDRILRP 801
            NATV VMSYS +DIEDA+++N++++DRGFGRC + +  +    +I  K  +   D +L  
Sbjct: 834  NATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSISTELNSIGSKSVDGIKDILL-- 891

Query: 802  DRTGPGAERMQVV--HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
               GP  + ++    +H+      ++DDGL A G  +K  D+ INK   +     +   T
Sbjct: 892  ---GPPKDHLKQYEGYHA------IEDDGLCAVGAHLKTGDIVINKGRHITNIPGLSDGT 942

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
              T S  +S  ++ K P   T  +D+V + ++ +G++ IK L R  RRPE+GDKFSSRHG
Sbjct: 943  EATVSLIKSP-ESLKSPLETTTYIDKVLVTTNGDGNMLIKVLTREPRRPEVGDKFSSRHG 1001

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKGVCG IV Q D PF+ +GI PDLIMNPHG+PSRMTV K++ELL  K+G   G    G+
Sbjct: 1002 QKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSGCFRGEQTDGT 1061

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F   +      E + ++L   GFSY+GKD++YSG+TG  +  YIF GPIYYQKLKHMV 
Sbjct: 1062 CFRTKTDETFLAE-LYDSLRVAGFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVK 1120

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+H+RG+GP  MLTRQPTEGR  +GGLR+GEMERDC I+YGAS L+ ER M+SSD F  
Sbjct: 1121 DKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDDFLA 1180

Query: 1100 QVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
             VC  CGL  Y   K  A  C TC++G ++  +++PYA KL+IQEL SM ++ R++L ++
Sbjct: 1181 YVCETCGLFSY--EKNGALWCPTCQSGKDVVKIRIPYAAKLMIQELISMGVLVRMQLEDS 1238



 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 23/328 (7%)

Query: 23  APVKSV-VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR 81
           +PV SV +D+++L+  +L    + K HLDSFN+ ++  I  I+R N  +V    P   LR
Sbjct: 12  SPVHSVAMDRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIRENSLLVVAKHPQFHLR 71

Query: 82  FKDVRIGQPSM-------TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            + V + Q S        +  G    L PH CR  +MTYAAPI +++   + S+      
Sbjct: 72  IEKVDVKQVSQGSSKLASSSAGSGVGLTPHECRQRNMTYAAPITIDVR-CKASNKSSVQY 130

Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            K D+ IG IPIMLRS RC+L  K   + A L ECP DPGGYFI++G EK +L+ EQ++ 
Sbjct: 131 YK-DICIGYIPIMLRSNRCILTNKSRKQQAFLQECPDDPGGYFIVRGAEKSILLAEQMTM 189

Query: 195 NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGM 253
           NR+++  +  GN+  +V S+T   KS+  +  +  K YL+ N+F KK IPI+ V KAMG 
Sbjct: 190 NRIVVGRNADGNVEVTVASNTTERKSRCAVLYKNKKFYLIHNKFNKKPIPIVTVFKAMGF 249

Query: 254 ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV-------KRSTFGS 306
            +D  V+ ++G D  +   +  S++EC+N  IYTQE+AL+YL  ++         S F +
Sbjct: 250 VNDVTVLSLIGTDQLFLDYMSLSVQECSNDKIYTQEQALKYLADRIIVRTYTNANSNFST 309

Query: 307 PPNDREGRAF-----SILRDVFLANVPV 329
            P     +A        L    L+++PV
Sbjct: 310 SPVATAAKASVESARDCLAHFVLSHIPV 337


>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
            SJ-2008]
          Length = 1141

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1163 (37%), Positives = 662/1163 (56%), Gaps = 68/1163 (5%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFK 83
            + ++  F + +GLV+Q LDSF+ FV T +++++  N  I+    P+        I +RF 
Sbjct: 11   WSIISSFFEQKGLVRQQLDSFDQFVRTKMQEVINENPAIIVQSAPTAGTEIQKRITVRFG 70

Query: 84   DVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
             + + +P +    DG +  + P+  R+ D+TYA+P+ +++  ++ + +E   ++K+    
Sbjct: 71   QIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDV--IKETVSELGVVDKHKYSR 128

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V  G +P+MLRS  CVL+G  + +L  LGECP D GGYFI+ G+EKV++ QE+++ N V 
Sbjct: 129  VPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVY 188

Query: 199  IDTDKKGNIN---ASVTSSTE-TVKSKTVIQME----KGKMYLLLNQFVKKIPIMVVMKA 250
            +    +       A + S  E + ++ + + M+     G + + L    + IP+ V+ +A
Sbjct: 189  VFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGAIRVSLPLVKQDIPLFVLYRA 248

Query: 251  MGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            +G  SD+E++  +    D     LL  SIEE     +  Q  AL+Y+ GK + +  G+P 
Sbjct: 249  LGFLSDKEIIDHILYEDDDEMFELLKESIEE--GTVVQDQNVALDYI-GK-RSAPVGTPQ 304

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A  +L    L ++         K +++  +++R++   L +   DD+D+ G KR
Sbjct: 305  EKRITIARDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKR 364

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            ++LSG L++ LF  LFK + ++  + +   +        F+++  +    IT G    L+
Sbjct: 365  MDLSGPLLASLFRTLFKKLCADTTRHMQKCIEN---GREFNIALGLKASIITQGFRYALA 421

Query: 429  TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            TGN+ D  +    R G+ QVL R +F+ TL H+ RV+   EK  K++ PR L  + WGM+
Sbjct: 422  TGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMV 481

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP +TPEG+ACGLVKNL+LM +++     GPLI      GVE LE +S  +L       V
Sbjct: 482  CPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLEEISTLQLSTATKVFV 541

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG+ +G H  P      ++ LRR+ +I + VS+  + +++ + I SD GR CRPL++ 
Sbjct: 542  --NGVWVGIHSDPVYLIKSLKLLRRSLEIDKEVSIVRDIREKEIRIQSDAGRPCRPLMVV 599

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY----------EGD 657
                  I    +++L  G   +D+ + EG IE+LDV EE  ++IA+             D
Sbjct: 600  RDNKLVITIEDIRKLRRGEIKWDNLIGEGFIEFLDVEEEEMSMIAMSTKVLNDECKNSSD 659

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
                 TH EI P  ILG+ A  IP+P HNQSPRNTYQ AMGKQAMG  A N L RMD+L 
Sbjct: 660  VKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLS 719

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
             +L YPQ+PL+TT+++E + + +L +GQNA VA+  YSGY+ ED+I+MN+S++DRG  R 
Sbjct: 720  NILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRS 779

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
               + YT          ++   +P+R         V+   NL    LD+DGL +PG  + 
Sbjct: 780  FFYRTYTDQESMSRPGVNEEFCKPNRGS-------VLRMKNLNYNKLDEDGLISPGVRVT 832

Query: 838  PNDVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
             +DV I K +P+    R +  +P         + R+T      ET +VD V + ++K+G 
Sbjct: 833  GDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRT------ETGIVDTV-IVTNKDGY 885

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
               K  IR  R P++GDKF+SRH QKG  G  ++QED PF+  GI PD+I+NPH  PSRM
Sbjct: 886  KFSKVKIRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRM 945

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G +IE L GK     G     + F   SG   +V  IS  L  +GF   G +++Y+G+
Sbjct: 946  TIGHLIECLLGKVSAMSGEEGDATPF---SGM--SVNEISTRLKSYGFQQRGLEVMYNGM 1000

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  L+A IF GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 1001 TGRKLRAQIFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERD 1060

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            C+I++GAS  + ERLM  SD +   VC +CGLL     K+    C  C N  N+S +++P
Sbjct: 1061 CIISHGASAFLKERLMDVSDAYSCYVCNLCGLLAMGGTKVNE--CKGCNNTTNVSMVEIP 1118

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YA KLLIQEL  MNI PR++  E
Sbjct: 1119 YAFKLLIQELMGMNIAPRIRFEE 1141


>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1304

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1200 (37%), Positives = 676/1200 (56%), Gaps = 87/1200 (7%)

Query: 7    EGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-- 64
            + +  DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+ T I+KIV  
Sbjct: 136  QSNEDDEITPDMWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQTSIQKIVED 187

Query: 65   ------RANDRIVSGI--DPSIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYA 114
                  +A  +   GI   P  + L+F+ + + + +    DG S  + P+  RL ++TYA
Sbjct: 188  SPIIELQAEAQHSGGILETPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYA 247

Query: 115  APILVNI--EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLD 172
            AP+ V++  + ++    E+  +EK    IG+IPIMLRS  C+L    + +LA L ECPLD
Sbjct: 248  APLYVDVMKKIIRDEIEEEKPLEKK--FIGKIPIMLRSTYCLLSVMSDRDLAELNECPLD 305

Query: 173  PGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQM 226
            PGGYFII G+EKVL+ QE+++ N V +   K      K  I + +  S+    +  +  M
Sbjct: 306  PGGYFIINGSEKVLIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMM 365

Query: 227  EKG------------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSA 271
             +G            ++  +L    ++IP+++V +A+G  +D+++++ +     D     
Sbjct: 366  ARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMRE 425

Query: 272  LLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHN 331
            ++ PS+++     I  Q+ AL ++  +  R   G     R   A  IL+   L +V V +
Sbjct: 426  MIKPSLDDA--FVIQEQKVALNFIGSRGARP--GVTKEKRIKYAKEILQKETLPHVGVSD 481

Query: 332  NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
                 K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  LF+ +  E+
Sbjct: 482  FCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEI 541

Query: 392  ----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQ 446
                QK +D       +   F+L   I    IT GL+ +L+TGN+ D K+    R G++Q
Sbjct: 542  RLYAQKFID-------KGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQ 594

Query: 447  VLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
            VL RL+F  TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLAL
Sbjct: 595  VLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLAL 654

Query: 507  MTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADV 566
            M +++   +  P++       +E+LE ++   +       V  NG  +G H  P      
Sbjct: 655  MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFV--NGCWVGIHSSPDHLMGT 712

Query: 567  MRKLRR-AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
            +RKLRR    I   VS+  + + + + I +D GR+CRPLVI +KG   +K  H++ L D 
Sbjct: 713  LRKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIELLKDK 772

Query: 626  VR---SFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVI 676
                 S+ D +  G++EY+D  EE   +IA+   +           TH EI P  ILG+ 
Sbjct: 773  AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGIC 832

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L  +L YPQ+PL+ TR++E +
Sbjct: 833  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYL 892

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             + +L AG NA VA+ +Y+GY+ ED++++N+S++ RGF R    + Y     ++     +
Sbjct: 893  RFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGMDLEE 952

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
               +P+      +  Q + H+  +   LDDDGL APG  +  +DV I K   L      M
Sbjct: 953  VFEKPN-----PQNCQGMRHA--IYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEM 1005

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
               GQ   RY     +      E  +VD+V +  +  G+   K  +R T+ P++GDKF+S
Sbjct: 1006 E-GGQ--RRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFAS 1062

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +  
Sbjct: 1063 RHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGE 1120

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             G A   P   A  V  IS  L ++G+ + G +++Y+G TG  L + IF+GP YYQ+LKH
Sbjct: 1121 IGDA--TPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKH 1178

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP
Sbjct: 1179 MVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDP 1238

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            ++V VC +CGL+   + + K   C +CKN   IS +KLPYACKLL QEL SM+I PR+ +
Sbjct: 1239 YQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMI 1298


>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
            5348]
 gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Metallosphaera sedula DSM 5348]
          Length = 1124

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1149 (37%), Positives = 651/1149 (56%), Gaps = 54/1149 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            SV D++ ++  + K RGLV+QHLDSFN F+   +++I+     I++ I P + +R   +R
Sbjct: 3    SVDDRWVIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEI-PGLKIRLGKIR 61

Query: 87   IGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            +G+P +   D   +++ P   RL ++TYAAPI + +  V+ +     T    +V IG IP
Sbjct: 62   VGKPRVREADKGDKEITPMEARLRNLTYAAPIFLTMTPVENNIEGDPT----EVHIGDIP 117

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S         + +L  +GE P DPGGYFII G+E+V++ QE L+ NRV+ D  K G
Sbjct: 118  IMLKSIADPTSEFSQDKLVEIGEDPKDPGGYFIINGSERVIVTQEDLATNRVLTDVGKAG 177

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             N+   A + SST   +    I+ ++   +++       +IP  ++M+A+G+E+D+++  
Sbjct: 178  SNVTHTAKIISSTSGYRVPITIERLKDSTIHVSFPSAPGRIPFAILMRALGVETDEDITL 237

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP+    LLPS+E+ ++  I ++E AL+++  +V     G     R  +A  IL  
Sbjct: 238  AVSLDPQIQNELLPSLEQASS--ISSKEDALDFIGNRV---AIGQKREMRIQKAEQILDK 292

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++  + ++   K +Y+A  + +++E  L +   DDKD+  NKRL+L+G L + LF 
Sbjct: 293  YFLPHIGTNPSDRVAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLFASLFR 352

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   V  +     R  R  ++  +  D I+  +   L+TGN+        R
Sbjct: 353  VAFKAFVKDL---VFQLEKSKVRGRRLAINALVRPDIISERIRHALATGNW-----VGGR 404

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 405  TGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 464

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGV----EDLELLSGEELHNPNSFL---VIFNGLIL 554
            KN+AL+  ++    E  L    Y LGV    + ++ +  EE  + N      VI NG ++
Sbjct: 465  KNIALLAQISVGINEKSLERTLYNLGVVPIDDAIKKVKSEEGQSENYQTWSKVILNGRLI 524

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVN--EKQRCVYIASDGGRVCRPLVIADKGIS 612
            G +   +  A+ +R+ RR G++ + V+V  N  E    VYI SD GRV RPL++   G  
Sbjct: 525  GYYPDGRELAEKIRESRREGELSDEVNVSYNITETFNEVYINSDSGRVRRPLIVVKHGKP 584

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             + +  ++ L  G  +FD  ++EG IE+LD  EE NA IAL   D T D TH+EI    I
Sbjct: 585  LVTKEDIENLKKGKITFDTLVKEGKIEFLDAEEEENAYIALEPKDVTKDHTHLEIWAPAI 644

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQ+P++ TR 
Sbjct: 645  LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRA 704

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            +E +GY +  AG NA  A+MSY+GY++EDA++MNKSS+DRG  R    + Y+A   KY  
Sbjct: 705  LEAIGYTERPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPG 764

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---L 849
               D IL P+   PG    +   +  L    L+ +G+ +P   +K  DV I K SP   L
Sbjct: 765  GQEDEILLPE---PGVRGYKGKDYYRL----LESNGIVSPEVDVKGGDVLIGKVSPPRFL 817

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            +    +     + D+   +         GE   VD V +     G+  +K  +R  R PE
Sbjct: 818  QEFKELSPDQAKRDTSIITRH-------GERGTVDLVLVTETSEGNKLVKVRVRDLRIPE 870

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKF++RHGQKGV G ++ Q D P++  G+ PD+I+NPH  PSRMTVG+++E + GK  
Sbjct: 871  IGDKFATRHGQKGVIGMLIPQVDMPYTTSGLVPDIILNPHALPSRMTVGQIMEAIAGKFV 930

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
             + G     + F     +   +E I   L++HG+  +G +++Y G TG  L+  I  G +
Sbjct: 931  AATGNPIDATPF-----YNTPIEEIQRKLLEHGYLSDGSEVVYDGRTGEKLKGRILFGIV 985

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKL HMV DKMH RG GP  +LTRQPTEGRAR GGLR GEMERDCLI YGA+MLI +R
Sbjct: 986  YYQKLHHMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDR 1045

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L+ +SD   V VC  CG +G+Y+      IC    +   +  + + YA KLL+QEL SM 
Sbjct: 1046 LLDNSDRATVYVCEQCGYVGWYDRTKNKYICPIHGDKTTLYPVVISYAFKLLLQELMSMV 1105

Query: 1150 IVPRLKLAE 1158
            I P+L L +
Sbjct: 1106 IAPKLVLGD 1114


>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
          Length = 1178

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1176 (37%), Positives = 659/1176 (56%), Gaps = 87/1176 (7%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI---------VSGIDPSI--FLRF 82
            L+  +   +GLV+Q LDSF+ F+   +++IV  + +I            I+  +   L+F
Sbjct: 32   LINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIELQAEAQHTTGEIEKPVKHLLKF 91

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I + ++    +    +     
Sbjct: 92   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKDGEDPVETQHQKTF 151

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 152  IGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 211

Query: 201  TDK------KGNINASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IP 243
            + K      K  I + +  S+    +  +  M K          G+  + +  ++K+ IP
Sbjct: 212  SMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIP 271

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IMVV +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++     
Sbjct: 272  IMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFI----- 324

Query: 301  RSTFGSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
              T G+ P   +E R   A  IL+   L +V + +     K +++  M+ R++ A L + 
Sbjct: 325  -GTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 383

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQ 412
             +DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L  
Sbjct: 384  ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLEL 436

Query: 413  FIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
             I    IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  
Sbjct: 437  AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG 496

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K++ PR L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+L
Sbjct: 497  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 556

Query: 532  ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRC 590
            E ++   + +     V  NG  +G HR P      +RKLRR   I    VS+  + + R 
Sbjct: 557  EEIAPSAIADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMVRDIRDRE 614

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
            + I +D GR+ RPL+I +     ++  H   +KE       + + +  G++EY+D  EE 
Sbjct: 615  IRIYTDAGRISRPLLIVEGQNLLLQTRHINMLKERDYNNDGWQELVGSGVVEYIDTLEEE 674

Query: 648  NALIALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
              +IA+   D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGK
Sbjct: 675  TVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 734

Query: 700  QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
            QAMG    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ 
Sbjct: 735  QAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQ 794

Query: 760  EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNL 819
            ED++++N S+++RGF R +  + Y     K      ++  +P R      R       N 
Sbjct: 795  EDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLTCSGMR-------NA 847

Query: 820  LLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDG 878
            +   LDDDG+ APG  +  +DV I K   L ET   + S T +   R  S        + 
Sbjct: 848  IYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLR----NS 903

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  
Sbjct: 904  ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSSE 963

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PD+I+NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L
Sbjct: 964  GLTPDIIINPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLL 1019

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP 
Sbjct: 1020 QEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 1079

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +    
Sbjct: 1080 EGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTF 1139

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C  CKN   I+ ++LPYA KLL QEL +MNI PRL
Sbjct: 1140 ECKGCKNKTQIAQIRLPYAAKLLFQELMAMNIAPRL 1175


>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
            var. grubii H99]
          Length = 1245

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1248 (35%), Positives = 683/1248 (54%), Gaps = 135/1248 (10%)

Query: 7    EGSPKDEQLPDKQKLA--APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV 64
            + +PK+++  +K  +    P+ S  D + ++  F + +GLV+Q L+SFN F+   +++IV
Sbjct: 28   QTAPKNDEDEEKYDVDDDEPI-SQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIV 86

Query: 65   RANDRI----------VSGIDPSIF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMT 112
              + R+          V+G +   + + F  + + + + T +DG +  L P   RL ++T
Sbjct: 87   DDHSRLTLDQFTQYTGVAGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLT 146

Query: 113  YAAPILVNIEY-------------------------VQGSHTEKTTMEKNDVVIGRIPIM 147
            Y+AP+ V+I+                          V+G+  EKT+       IG++P+M
Sbjct: 147  YSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGEVEGAEEEKTS-------IGKVPVM 199

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII---DTDKK 204
            +RS  C+L+G  + +   +GECP D GGYFII G+EKVL+ QE+++ N V +       +
Sbjct: 200  VRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPAR 259

Query: 205  GNINASVTSSTET---VKSKTVIQMEK-------GKMYLLLNQFVKKIPIMVVMKAMGME 254
                A + S  E    V + T ++M         G + + L      IP++VV +A+G+ 
Sbjct: 260  FTYFAEINSQKEKGGRVANHTEVRMYARASGTTGGVIRVSLPYTKVDIPLVVVFRALGIV 319

Query: 255  SDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
             D++V+  +     D     +L PSIEE  +  +  ++ AL+++  + +     +P   R
Sbjct: 320  PDRDVLSHICFGAEDEALLEMLQPSIEE--SFAVQDRDTALDFIGRRGQHEK--APRAQR 375

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            +  AF IL   FL +V         K +++  M+ R+  A L +  +DD+D+ GNKRL+L
Sbjct: 376  QRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDL 435

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L++ +F  +F  +  ++ + +   + +   +  F L+  I  ++IT GL+  L+TGN
Sbjct: 436  AGPLMAEMFNVVFGKLREDMYRYLKKCVEQ---NKEFALNMAIRPNTITDGLKYALATGN 492

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +  +     R G++QVL R +F  TL H+ R +    +  K + PR L  + WGM+CP +
Sbjct: 493  WGKR--DNTRAGVSQVLNRYTFTSTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAE 550

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEG ACGLVKNLALM++++      P++      G+EDL     E    P +  V  NG
Sbjct: 551  TPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDL----SEYQDAPTATKVFVNG 606

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-- 609
            + +G HR      + + ++RR G++   VS+  + ++R + + +D GRVCRPL I D+  
Sbjct: 607  VWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPT 666

Query: 610  --------GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---- 657
                     I RI +   + LL G  ++D  L EG++EY+D  EE   LIA+   D    
Sbjct: 667  QTLRLKRDHIDRIDQMADEGLLSG--AWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNA 724

Query: 658  -------------------------------ATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
                                            +   TH+EI P  ILGV A +IP+P HN
Sbjct: 725  RTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHN 784

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQ AMGKQAMG    N   RMD+++ +L YPQ+PL TTR++E + + +L AGQN
Sbjct: 785  QSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQN 844

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA+M YSGY+ ED+++MN+SS+DRG  R +  + YT   +      ++ I +PDR   
Sbjct: 845  AIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRN-- 902

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
              E +++ H +      LD DGL APG  +  +D+ I K +PL      +    Q  ++ 
Sbjct: 903  --ETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTK- 959

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
            R      K    E  VVD+V L ++  G++ +K  +R TR P++GDKF+SRHGQKG  G 
Sbjct: 960  RDISTPLKST--EQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGI 1017

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED PF+  G+ PD+I+NPH  PSRMT+G ++E L  K     G     + F E   
Sbjct: 1018 TYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTEL-- 1075

Query: 987  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
               TVE++S+ L   G+   G +++Y G TG  LQA ++ GP YYQ+LKHMV DK+HAR 
Sbjct: 1076 ---TVEAVSKVLRAKGYQSRGFELLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARA 1132

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + ER+  SSD F + VC VCG
Sbjct: 1133 RGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCG 1192

Query: 1107 LLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            L+   N K +   CS C+N   IS + +PYA KLL QELQ+MNI  R+
Sbjct: 1193 LMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQAMNIACRM 1240


>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
 gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
          Length = 1127

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1168 (37%), Positives = 657/1168 (56%), Gaps = 63/1168 (5%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            + V  SP D   P +           D++ L+  F+K +GL    + SFN F++  + +I
Sbjct: 7    LPVVTSPSDGGFPTRD----------DRWVLVERFIKDKGLASHQIKSFNDFLDKKLPRI 56

Query: 64   VRANDRIVSGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPI-LVNI 121
            V  + ++V      + L  + + +G P +   DG    + P   RL + TY+AP+ L   
Sbjct: 57   VE-DFKVVETEIKGLKLVLERIEVGWPRIKESDGSESLIYPMEARLRNATYSAPLYLTAT 115

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
             YV        T       IG +PIM++S RC L      E A+  E P D GGYFII G
Sbjct: 116  LYVDDEPYATETF-----YIGELPIMVKSKRCNLTRLRTGEYAKRFEDPQDFGGYFIING 170

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQME---KGKMYLLLNQF 238
            +E+V++ QE L  +R I D   K ++     + +  +  ++ + +E    G +Y  L+  
Sbjct: 171  SERVIISQEDLVADRPIYDKGDKPSVRYLAKTISTGIGYRSTLTVEFSRDGVIYATLSAM 230

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
              KIP  + MKA+G+E+D+EVV+ V  DP     LLPS+   AN    T+E AL+++ GK
Sbjct: 231  PVKIPFPIYMKALGLETDEEVVKAVSDDPEIQKELLPSLI-AANQIAITREDALDFIGGK 289

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR-------PKCFYVAVMLRRMVEA 351
            V     G P   R  RA  +L   FL ++     + +        K   +  +++ +VE 
Sbjct: 290  V---AVGQPRPVRVERALQLLDRYFLPHLGTTVADEKRQQEIRLKKALMLGQIVKGLVEL 346

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L +   DDKD+V NKR+ L G L++ LF  +FK  + E++      L K     R    
Sbjct: 347  HLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQ----LEKYYARGRIPHI 402

Query: 412  QFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
            Q +VR D IT  + + L+TGN+        + G++Q+L R +++ TL ++ RV     ++
Sbjct: 403  QTVVRPDIITERVRQALATGNW-----VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRT 457

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
            +     R L P+QWG LC  +TPEG+  GLVKNLAL+  +TT  +EG +  + Y +GV  
Sbjct: 458  QPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEGEVEQMLYGMGVVP 517

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            +     E +     +L   NG ++G H  P   A  +R LRR GKI + +++ V      
Sbjct: 518  ILKARDEGVAGAEVYL---NGRLIGVHPNPDELAAAVRGLRRQGKISDEINIAV--LNGV 572

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNAL 650
            VY+ SDGGR+ RPL++ + G  ++ +  ++ +  G  ++DD ++ G++EYLD +EE NA 
Sbjct: 573  VYVNSDGGRIRRPLLVVEDGKLKLTKEVVERVKRGDLTWDDLVKTGVVEYLDADEEENAH 632

Query: 651  IALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
            IA        + TH+EI P +ILG +A +IPY  HNQSPRN Y+ AM KQ++G    N L
Sbjct: 633  IATDPHVDLSNYTHVEIIPSSILGAVASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNLL 692

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             ++DS  ++L YP+RP++TTR +EL+GY K  AGQNA VA+++Y+GY+IEDA+++NK+S+
Sbjct: 693  YKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASV 752

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            +RG  R +  + Y    QKY     DRI  PD +  G    +   H       LD+DG+A
Sbjct: 753  ERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVKGYRGPEAYSH-------LDEDGIA 805

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 890
             P   +  N+V I K SP     ++ +     + R  S         GE  +VDRV +  
Sbjct: 806  PPEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVR----RGERGIVDRVIVTE 861

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
               G+  +K  +R  R PELGDKF+SRHGQKGV G +++ ED PF+E GI PD+I+NPH 
Sbjct: 862  SPEGNKLVKVRLRELRIPELGDKFASRHGQKGVLGMLLRHEDMPFTEDGIVPDIIVNPHA 921

Query: 951  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1010
             PSRMTV +++E + GK G S G     + F          E + + L+K G+ ++GK++
Sbjct: 922  LPSRMTVAQLLESMAGKVGASTGHLVDATPF-----EGVKEEDLRKLLLKLGYKWDGKEV 976

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1070
            +YSGITG  L A IF+G +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR+G
Sbjct: 977  MYSGITGERLVADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRLG 1036

Query: 1071 EMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNIS 1130
            EMERD LIA+GAS L++ERL+ SSD + + VC +CGL  Y + K     C    +    +
Sbjct: 1037 EMERDVLIAHGASALLYERLVESSDKYVMYVCELCGLPAYLDAKSNKPRCPIHGDAGQFA 1096

Query: 1131 SMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             + +PYA KLL+QEL ++ I P+++L+E
Sbjct: 1097 KVVVPYAFKLLLQELIALGIYPKIELSE 1124


>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1158

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1171 (37%), Positives = 666/1171 (56%), Gaps = 79/1171 (6%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGI--DPSIF-LRF 82
            ++  +   +GLV+Q LDSF+ F+ T I+KIV        +A  +   GI   P  + L+F
Sbjct: 9    VISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILETPVQYRLKF 68

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKNDV 139
            + + + + +    DG S  + P+  RL ++TYAAP+ V++  + ++    E+  +EK   
Sbjct: 69   EQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDEIEEEKPLEKK-- 126

Query: 140  VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
             IG+IPIMLRS  C+L    + +LA L ECPLDPGGYFII G+EKVL+ QE+++ N V +
Sbjct: 127  FIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 186

Query: 200  DTDK------KGNINASVTSSTETVKSKTVIQMEKG------------KMYLLLNQFVKK 241
               K      K  I + +  S+    +  +  M +G            ++  +L    ++
Sbjct: 187  FKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQRIVAILPYIKQE 246

Query: 242  IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IP+++V +A+G  +D+++++ +     D     ++ PS+++     I  Q+ AL ++  +
Sbjct: 247  IPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDA--FVIQEQKVALNFIGSR 304

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
              R   G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +
Sbjct: 305  GARP--GVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDV 362

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFI 414
            DD+D+ GNKRL+L+G L++ LF  LF+ +  E+    QK +D       +   F+L   I
Sbjct: 363  DDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFID-------KGKDFNLELAI 415

Query: 415  VRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473
                IT GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K+
Sbjct: 416  RSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKL 475

Query: 474  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL 533
            + PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE 
Sbjct: 476  ARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 535

Query: 534  LSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR-AGKIGEFVSVFVNEKQRCVY 592
            ++   +       V  NG  +G H  P      +RKLRR    I   VS+  + + + + 
Sbjct: 536  IAPSAIGKTCKIFV--NGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIR 593

Query: 593  IASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR---SFDDFLREGLIEYLDVNEENNA 649
            I +D GR+CRPLVI +KG   +K  H++ L D      S+ D +  G++EY+D  EE   
Sbjct: 594  IYTDAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETV 653

Query: 650  LIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            +IA+   +           TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 654  MIAMGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 713

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L  +L YPQ+PL+ TR++E + + +L AG NA VA+ +Y+GY+ ED++
Sbjct: 714  VYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSV 773

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N+S++ RGF R    + Y     ++     +   +P+      +  Q + H+  +   
Sbjct: 774  IINESAIQRGFFRSEFYRTYKDQETRHGMDLEEVFEKPN-----PQNCQGMRHA--IYDK 826

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDGL APG  +  +DV I K   L      M   GQ   RY     +      E  +V
Sbjct: 827  LDDDGLIAPGTRVSGDDVLIGKTITLPENEDEME-GGQ--RRYTKRDASVFMRRSEYGIV 883

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V +  +  G+   K  +R T+ P++GDKF+SRHGQKG CG   +QED PF+  GI PD
Sbjct: 884  DQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPD 943

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V  IS  L ++G+
Sbjct: 944  IIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVRKISLLLQEYGY 999

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
             + G +++Y+G TG  L + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGR+R
Sbjct: 1000 QHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSR 1059

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CGL+   + + K   C +C
Sbjct: 1060 DGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAIAHQRNKTYECRSC 1119

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN   IS +KLPYACKLL QEL SM+I PR+
Sbjct: 1120 KNTTQISLVKLPYACKLLFQELMSMSIAPRM 1150


>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
            11548]
 gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum calidifontis JCM
            11548]
          Length = 1127

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1143 (38%), Positives = 653/1143 (57%), Gaps = 55/1143 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ L+  F+K +GL    + SFN F++  + +IV     + + I   + L  + + +G 
Sbjct: 23   DRWALVERFIKDKGLANHQIKSFNDFLDKRLPRIVEEFKVVETEIK-GLKLVLEKIEVGW 81

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPI-LVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P +   DG    + P   RL + TYAAP+ L    YV        T       IG +PIM
Sbjct: 82   PRIKESDGSESLIYPMEARLRNATYAAPLYLTATLYVDDEPYVTETF-----YIGELPIM 136

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            ++S RC L     +E A+  E P D GGYFII G+E+V++ QE L  +R I D   K ++
Sbjct: 137  VKSKRCNLTRLKPSEYAKKFEDPQDFGGYFIINGSERVIISQEDLVTDRPIYDVGDKPSV 196

Query: 208  N--ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A   S+    +S   +++ K G +Y+ L+    KIP  + MKA+G+E+D++VV+ V 
Sbjct: 197  KFLAKTISTGIGYRSTLTVELNKDGVIYVTLSAMPVKIPFPIYMKALGLETDEDVVKAVS 256

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP     LLPS+   AN    T+E AL+Y+ GKV     G P   R  RA  +L   FL
Sbjct: 257  DDPDIQKELLPSLI-AANQVAITREDALDYIGGKV---AVGQPRPVRIERALQLLDRYFL 312

Query: 325  ANVPVHNNNFRP-------KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             ++     + +        K   +  +++ +VE  L +   DDKD+VGNKR+ L G L++
Sbjct: 313  PHLGTTTPDEKKQQEIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVGNKRVRLVGDLMT 372

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKR 436
             LF  +FK  + E++      L K     R    Q IVR D IT  + + L+TGN+    
Sbjct: 373  QLFRTVFKQFLQELRSQ----LEKYYARGRIPHIQTIVRPDIITERVRQALATGNW---- 424

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                + G++Q+L R +++ TL ++ RV     +++     R L P+QWG LC  +TPEG+
Sbjct: 425  -VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVETPEGQ 483

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
              GLVKNLAL+  +TT  +E  +  L Y LG   + +L   E        V  NG ++G 
Sbjct: 484  NVGLVKNLALLAEITTGVDEREVEQLLYNLGT--VPVLKARE-DGIRGAEVYLNGRLIGI 540

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSV-FVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
            H   +     +R LRR GKI + +++  +N     V +  DGGR+ RPL++ + G  ++ 
Sbjct: 541  HPNAEELVATVRSLRRQGKISDEINIAHING---SVLVNCDGGRIRRPLLVVENGRLKLT 597

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
            +  ++ +  G  ++DD ++ G++EYLD +EE NA IA+         TH+EI P  ILG 
Sbjct: 598  KDIVERVRKGDLTWDDLVKMGVVEYLDADEEENAHIAVDPRGDLSGYTHVEIIPSAILGA 657

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            IA +IPY  HNQSPRN Y+ AM KQ++G    N L ++DS  ++L YP+RP++TTR +EL
Sbjct: 658  IASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLEL 717

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            VGY K  AGQNA VA+++Y+GY+IEDA+++NK+S++RG  R +  + Y    QKY     
Sbjct: 718  VGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEE 777

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DRI  PD +  G    +   H       LD+DG+A P   +  N+V I K SP   R   
Sbjct: 778  DRIEVPDSSVKGYRGPEAYSH-------LDEDGIAPPEVYVSSNEVLIGKTSP--PRFYT 828

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
               T +     R A    +   GE  +VDRV +     G+  +K  +R  R PELGDKF+
Sbjct: 829  TLETERILKERRDASVAVR--RGEKGIVDRVIITESPEGNKLVKVRLRELRIPELGDKFA 886

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G +++QED PF+E GI PD+I+NPH  PSRMTVG+++E + GK G + G+ 
Sbjct: 887  SRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVGQLLESIAGKVGAATGQL 946

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
               + F E  G  D    + + L+K GF ++GK+++YSGITG  L A IF+G +YYQKL 
Sbjct: 947  VDATPF-EGVGEED----LRKLLLKLGFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLH 1001

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMV DK+HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GAS L++ERL+ SSD
Sbjct: 1002 HMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSD 1061

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
             + + VC +CGL  Y + K     C    +    + + +PYA KLL+QEL ++ I P+L+
Sbjct: 1062 KYVMYVCELCGLPAYLDAKTNKPRCPIHGDTGQFAKVVVPYAFKLLLQELMALGIYPKLE 1121

Query: 1156 LAE 1158
            L+E
Sbjct: 1122 LSE 1124


>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1207

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1183 (38%), Positives = 659/1183 (55%), Gaps = 89/1183 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-RAND------------RIVSGIDP 76
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  A D            R    ++ 
Sbjct: 42   DAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPGRQSDFVEM 101

Query: 77   SIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSH--TEK 131
               + F  + + +P MT  DG +  L P   RL ++TY++P+ V++    V+  H   E 
Sbjct: 102  VYRISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDVTKRVVKKGHDCEEV 161

Query: 132  T-TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            T T E   V IG++PIMLRS  C LY   E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 162  TETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIINGSEKVLIAQE 221

Query: 191  QLSKNRVIIDTDKKGNINASVTSSTETVKSKT------VIQM--EKGKMYLLLNQFVK-- 240
            ++S N V +   ++ N  A V+      +S+        ++M            Q+++  
Sbjct: 222  KMSTNHVYVFKIRQPNKYAYVSEVRSMAESQNRPPSGMFVRMVSSSSAKGGSSGQYIRAT 281

Query: 241  ------KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
                  +IPI+VV +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 282  LPYIRTEIPIVVVFRALGFVADKDILEHICYEFTDNKMMDLLRPSLEEA--FVIQNQQVA 339

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + ST G     R   A  IL+   L +V         K +Y   ++ R++  
Sbjct: 340  LDYI-GK-RGSTVGVTKEKRIRYAKEILQREMLPHVGTGEYCETKKAYYFGYIIHRLLLC 397

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L +   DD+D+  NKRL+L+G L+  LF  LF+ +     S VQK VD           
Sbjct: 398  ALGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKD 450

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 451  VNLQFAIKAKTITSGLKYSLATGNWGQANSAGSRAGVSQVLNRLTYASTLSHLRRLNSPI 510

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++       
Sbjct: 511  GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWS 570

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG  +G HR P+     +R+LRR   +   V V  + +
Sbjct: 571  TENFEEISPAVI--PLATKIFVNGCWVGIHRNPELLVRTLRQLRRQVDVNTEVGVIRDIR 628

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEH-----HMKELLDGVRSFDDFLREGLIEYLD 642
             + + + +D GR  RPL I +K   +IK+        +E  + V  + D + +G IEY+D
Sbjct: 629  LKELRLYTDCGRCSRPLFIVEKQKLQIKKKDILALQQRESPEEV-GWHDLVAKGYIEYVD 687

Query: 643  VNEENNALIALYEGDAT-----PDT------THIEIEPFTILGVIAGLIPYPHHNQSPRN 691
              EE   +I++   D T     PD       TH EI P  ILGV A +IP+P HNQSPRN
Sbjct: 688  TEEEETTMISMTINDLTSARLCPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 747

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+
Sbjct: 748  TYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 807

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM 811
              YSGY+ ED+++MN+SS+DRGF R I  + Y    +K        +++ D   P  E  
Sbjct: 808  ACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKMGT-----LVKEDFGCPNRENT 862

Query: 812  QVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQ 871
              + H +   L  DDDG A PG  +   DV I K +P+    +     GQT +RY     
Sbjct: 863  MGMRHGSYDKL--DDDGFAPPGTRVAGEDVIIGKTTPIAPDDA----QGQT-ARYTRRDH 915

Query: 872  TYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 931
            +      E+ +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QE
Sbjct: 916  STCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTIGMAYTQE 975

Query: 932  DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTV 991
            D P++  GICPD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV
Sbjct: 976  DMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TV 1030

Query: 992  ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1051
            ++IS+ L K G+   G + +Y+G TG PL   IF+GP YYQ+LKHMV DK+H+RG GP  
Sbjct: 1031 DNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRLKHMVDDKIHSRGRGPVQ 1090

Query: 1052 MLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY 1111
            +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC +CG++   
Sbjct: 1091 ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCALCGIVAIA 1150

Query: 1112 NHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N K  +  C  CKN  +I  + +PYACKLL+QEL +M I PRL
Sbjct: 1151 NLKKNSFECRHCKNKTDIVQVYIPYACKLLLQELMAMAIAPRL 1193


>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
 gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
          Length = 1127

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1145 (38%), Positives = 652/1145 (56%), Gaps = 59/1145 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ L+  F++ RG+V   + +FN FV   + KIV     + + I   + +  + V IG 
Sbjct: 23   DRWALVRAFIRDRGIVDHQIRAFNDFVERRLPKIVEEMGTVETEIK-GLKVVIERVEIGW 81

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P +   DG    + P   RL + TY+API + +      + +        +  G +PI++
Sbjct: 82   PRIKEPDGSESLIYPMEARLRNATYSAPIYLTMTL----YVDDEPYATETIYAGELPIVV 137

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
            +S RC L      E A+  E P DPGGYFII G+E+V++ QE L  +R I D   K  + 
Sbjct: 138  KSKRCNLTRLKPEEYAKKFEDPEDPGGYFIINGSERVVISQEDLVTDRPIYDVGDKPTVR 197

Query: 209  --ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A V S+    ++   ++  K G +Y+ L+    +IP  V M+AMG+ESDQ++V  V  
Sbjct: 198  YLAKVISTGPGYRATMTVEYHKDGVIYVTLSAIPVRIPFTVYMRAMGLESDQDIVLAVSD 257

Query: 266  DPRYSALLLPSI---EECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
            DP     LLPS+   +E A     T++ AL+++ GK+     G P   R  RA  IL   
Sbjct: 258  DPDIQKELLPSLLAGQEIAT----TRDDALDFIGGKI---AVGQPRPIRIERALQILDKY 310

Query: 323  FLANVPVHNNNFRP-------KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
            FL N+     + +        K   +  + + ++E  L +   DDKD+V NKR+ L   L
Sbjct: 311  FLPNLNPQKPDDKAMQEARIKKALLLGQVAKGLIEMQLGRRRPDDKDHVANKRVRLVNDL 370

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDV 434
            ++ LF  + K  + E++      L K     +    Q IVR D IT  +++ L+TGN+  
Sbjct: 371  LAQLFRTVMKQFLQELKNQ----LEKYYARGKIPHLQTIVRPDIITERVKQALATGNW-- 424

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
                  + G++Q+L R +++ TL ++ RV     +++     R L P+QWG LC  +TPE
Sbjct: 425  ---VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVETPE 481

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+  GLVKNLAL+  VT   +E  +  L Y LGV  + +L     +      V  NG ++
Sbjct: 482  GQNVGLVKNLALLAEVTMGVDESSVEGLLYNLGV--VPVLEARR-NGVAGAEVYLNGRLI 538

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI 614
            G H  P+     +R +RR GK+ + V+V +      +Y+  DGGR+ RPL++ + G  ++
Sbjct: 539  GVHPEPEELVKNIRTMRRQGKVHDEVNVAL--LGNSIYVNCDGGRIRRPLLVVENGKLKL 596

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
               H+++L+ G  +++D ++ G+IEYLD +EE NA IA+   +     TH+EI P +ILG
Sbjct: 597  TREHVQKLVAGELTWNDLIKMGVIEYLDADEEENAHIAVDPQEDLAGYTHMEIIPSSILG 656

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             IA +IPY  HNQSPRN Y+ AM KQ++G    N + ++DS  ++L YP+RP++TTR +E
Sbjct: 657  AIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQANIMYKLDSRGHMLYYPERPIVTTRGLE 716

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+GY +  AGQNA VA+++Y+GY+IEDAI+MNKSS++RGF R    + Y    QKY    
Sbjct: 717  LIGYSRKPAGQNAVVALLTYTGYNIEDAIIMNKSSVERGFMRSNFYRTYETEEQKYPGGE 776

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             DRI  PD +  G    +   H       LD+DG+A P   +   +V I K +P   R  
Sbjct: 777  EDRIEVPDPSARGYRGPEAYGH-------LDEDGIAPPEVYVSGGEVIIGKTAP--PRFY 827

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
            +   T +     R A    +   GE  +VDRV +     G+  +K  +R  R PELGDKF
Sbjct: 828  MTLETEKILKERRDASIPVR--RGEKGIVDRVVITESPEGNKLVKVRLRELRVPELGDKF 885

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKGV G +++QED PF+E GI PD+I+NPH  PSRMTVG+++E + GKAG   GR
Sbjct: 886  ASRHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAMPSRMTVGQLLESIAGKAGAMVGR 945

Query: 975  FHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                + F G P         + E L+K G+ ++GK+++YSGITG  L A IF+G +YYQK
Sbjct: 946  LIDATPFEGVPESE------LRELLMKLGYRWDGKEVMYSGITGEKLVADIFIGIVYYQK 999

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DK+HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GAS L++ER++ S
Sbjct: 1000 LHHMVADKIHARSRGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERMVES 1059

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD + + VC +CGL  Y + K     C         + + +PYA KLL+QEL S+ I P+
Sbjct: 1060 SDKYVMYVCELCGLPAYLDAKTNRPKCPIHGETGQFAKVVVPYAFKLLLQELISLGIYPK 1119

Query: 1154 LKLAE 1158
            L+LAE
Sbjct: 1120 LELAE 1124


>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            terrestris]
 gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            impatiens]
          Length = 1175

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1170 (37%), Positives = 658/1170 (56%), Gaps = 77/1170 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-IDPSI--FLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  +   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIENPVRHLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IPIMVV 247
            G       I + +  S+    +  +  M K          G+  + +  ++K+ IPIM+V
Sbjct: 213  GKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V + +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P      +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+ RPL+I +     +K+ H   +KE       + + +  G++EY+D  EE   +IA+  
Sbjct: 620  RISRPLLIVEGQTLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSP 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  EDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N 
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N +   LDDD
Sbjct: 800  SAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NAIYDKLDDD 852

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 853  GIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTK-RDASTFLR--NSETGIVDQVM 909

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  G+ PD+I+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIIN 969

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 970  PHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLRG 1025

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1026 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +     C  CKN  
Sbjct: 1086 RFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKT 1145

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             IS ++LPYA KLL QEL +MNI PRL +A
Sbjct: 1146 QISQIRLPYAAKLLFQELMAMNIAPRLMVA 1175


>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1182 (37%), Positives = 656/1182 (55%), Gaps = 89/1182 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV------------SGIDPS 77
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I             S    +
Sbjct: 33   DAWTVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGGNSDFAEA 92

Query: 78   IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKT 132
            ++ + F  + + +P MT  DG +  L P   RL ++TY++P+ V++      +G   E+ 
Sbjct: 93   MYRISFGQIYLSKPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVTKRVVKKGFDCEEV 152

Query: 133  T--MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
            T   E   V IG++PIMLRS  C LY   E +L  LGECP D GGYFI+ G+EKVL+ QE
Sbjct: 153  TETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVNGSEKVLIAQE 212

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM------EKGK----MYLL 234
            ++S N V +   ++ N  +      S+  S     S   ++M      ++G     +Y  
Sbjct: 213  KMSTNHVYVFKKRQPNKYSYVAEVRSIAESQNKAPSGMFVRMLSRSGAKRGTSGQYIYAT 272

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
            L     ++PI+++ +A+G  +D+++++ +     D +   LL P +EE     I  Q+ A
Sbjct: 273  LPYIRTEVPIIIIFRALGFVADKDILEHICYDFNDSKMMELLRPFLEEA--FVIQNQQVA 330

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + ST G   + R   A  IL+   L +V         K +Y   ++ R++  
Sbjct: 331  LDYI-GK-RGSTIGVTRDKRIKYAREILQREMLPHVGTEEYCETKKAYYFGYIINRLLLC 388

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
             L +   DD+D+  NKRL+L+G L++ LF  LF+ +     S VQK VD           
Sbjct: 389  ALGRRPEDDRDHYANKRLDLAGPLLAGLFRMLFRKLTRDVRSYVQKCVD-------NGKD 441

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             +L   I   +IT GL+ +++TGN+        R G++QVL RL++  TL H+ R++   
Sbjct: 442  VNLQFAIKAKTITSGLKYSIATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 501

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
             +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++       
Sbjct: 502  GREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLDEWS 561

Query: 528  VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             E+ E +S   +  P +  +  NG  +G HR P+     +R+LRR   +   V +  +  
Sbjct: 562  TENFEEISPAVI--PQATKIFVNGNWIGIHRNPELLVRTLRQLRRQVDVNTEVGIIRDIH 619

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS----FDDFLREGLIEYLDV 643
             + + + +D GR  RPL I DK    IK+  +  L     +    + D +R G +EY+D 
Sbjct: 620  LKELRLYTDYGRCSRPLFIVDKQRLVIKKKDILALQQRESADEYGWHDLVRNGSVEYVDT 679

Query: 644  NEENNALIALYEGD-----ATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++   D       PD       TH EI P  +LGV A +IP+P HNQSPRNT
Sbjct: 680  EEEETTMISMTINDLINSRHNPDAAYSETYTHCEIHPSLVLGVCASIIPFPDHNQSPRNT 739

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 740  YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 799

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K        +++ D   P  +   
Sbjct: 800  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT-----LVKEDFGCPNRDNTM 854

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
             + H +   L  +DDG A PG  +  +DV I K +P        +P    + R+     +
Sbjct: 855  GMRHGSYDKL--EDDGFAPPGTRVSGDDVIIGKTTPF-------TPDENQNIRFTRQDHS 905

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  E+ VVD+V L ++ +G   +K  IR  R P++GDKFSSRHGQKG  G    Q+D
Sbjct: 906  SSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQIGDKFSSRHGQKGTIGMTYTQDD 965

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P+S  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 966  MPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 1020

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            +IS+ L K G+   G + +Y+G TG PL + IF+GP YYQ+LKHMV DK+H+RG GP  +
Sbjct: 1021 NISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 1080

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+G  N
Sbjct: 1081 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLMGIAN 1140

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             K  +  C +CKN  +I  + +PYACKLLIQEL SM I PRL
Sbjct: 1141 LKKHSYECRSCKNKTDIVQIYIPYACKLLIQELMSMAIAPRL 1182


>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
            polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
          Length = 1196

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1189 (37%), Positives = 672/1189 (56%), Gaps = 79/1189 (6%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+ T I+KIV       
Sbjct: 33   DEITPDMWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIE 84

Query: 65   -RANDRIVSGI--DPSIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +   GI  +P  + L+F+ + + + +    DG S  + P+  RL ++TYAAP+ V
Sbjct: 85   LQAEAQHSGGILENPVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYV 144

Query: 120  NI--EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYF 177
            ++  + ++    E+  +EK    IG+IPIMLRS  C+L    + +LA L ECPLDPGGYF
Sbjct: 145  DVMKKIIRDETEEEKPLEKK--FIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 202

Query: 178  IIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG-- 229
            II G+EKVL+ QE+++ N V +   K      K  I + +  S+    +  +  M +G  
Sbjct: 203  IINGSEKVLIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGK 262

Query: 230  ----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                      ++  +L    ++IP+++V +A+G  +D+++++ +     D     ++ PS
Sbjct: 263  DGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPS 322

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            +++     I  Q+ AL ++  +  R   G     R   A  IL+   L +V V +     
Sbjct: 323  LDDA--FVIQEQKVALNFIGSRGARP--GVTKEKRIKYAKEILQKETLPHVGVSDFCETR 378

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
            K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  LF+ +  E++    
Sbjct: 379  KAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQ 438

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIG 455
              + K      F+L   I    IT GL+ +L+TGN+ D K+    R G++QVL RL+F  
Sbjct: 439  KFIDK---GKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFAS 495

Query: 456  TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
            TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +
Sbjct: 496  TLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQ 555

Query: 516  EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR-AG 574
              P++       +E+LE ++   +       V  NG  +G H  P      +RKLRR   
Sbjct: 556  PSPILEFLEEWSMENLEEIAPSAIGKTCKIFV--NGCWVGIHSSPDHLMGTLRKLRRQVD 613

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR---SFDD 631
             I   VS+  + + + + I +D GR+CRPLVI +KG   +K  H++ L D      S+ D
Sbjct: 614  VIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQD 673

Query: 632  FLREGLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHH 685
             +  G++EY+D  EE   +IA+   +           TH EI P  ILG+ A +IP+P H
Sbjct: 674  LVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDH 733

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQ AMGKQAMG    N   RMD+L  +L YPQ+PL+ TR++E + + +L AG 
Sbjct: 734  NQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGI 793

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA+ +Y+GY+ ED++++N+S++ RGF R    + Y     ++     +   +P+   
Sbjct: 794  NAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGMDLEEVFEKPN--- 850

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
               +  Q + H+  +   LDDDGL APG  +  +DV I K   L      M   GQ   R
Sbjct: 851  --PQNCQGMRHA--IYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEME-GGQ--RR 903

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            Y     +      E  +VD+V +  +  G+   K  +R T+ P++GDKF+SRHGQKG CG
Sbjct: 904  YTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQKGTCG 963

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P 
Sbjct: 964  IRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPF 1019

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
              A  V  IS  L ++G+ + G +++Y+G TG  L + IF+GP YYQ+LKHMV DK+H++
Sbjct: 1020 NDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSQ 1079

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +C
Sbjct: 1080 SRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLC 1139

Query: 1106 GLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+   + + K   C +CKN   IS +KLPYACKLL QEL SM+I PR+
Sbjct: 1140 GLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRM 1188


>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
 gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
          Length = 1156

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1179 (37%), Positives = 666/1179 (56%), Gaps = 89/1179 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDVRIG 88
            D + ++  F +  GLV+QHLDS+N F++  + +I+  +  I +SG   S  L  K  RIG
Sbjct: 12   DLWTVMKSFFEEFGLVRQHLDSYNRFIDHLLPEIISEHKEIKISG---SRKLLIKGYRIG 68

Query: 89   -QPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
             +P + T++G    + P  CRL + TYA P+ + +        E    ++ ++ +  +P+
Sbjct: 69   NEPKIRTIEGFERTVTPLECRLRNFTYAVPVYLRV----ALQDETGIYKEQEIKLMDLPV 124

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            ML+S    L      EL  +GE P DPGGYFII G+EKVL+ QE L+ N ++ID   +G+
Sbjct: 125  MLKSKIDPLSKMTAEELIAIGEDPKDPGGYFIINGSEKVLVAQEDLASNNILIDYASEGS 184

Query: 207  IN---ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
                 A V S  +  +S+ VI+  K  ++   N    +IP++++M A+G+ S+ E+   V
Sbjct: 185  SATHIAKVISVAKGRRSQLVIERRKDGIFYA-NLHGHRIPVVILMTALGLASELEITHAV 243

Query: 264  GRDPRYSALLLPSIEECAN----LDI------------------YTQEKALEYLEGKVKR 301
              DP     LLPSI +  +    L+I                   T E AL+Y+  ++  
Sbjct: 244  SLDPDLQTYLLPSIMQAQSIFPKLEIPENASSEEQKRIEEEHRRKTIEIALDYIGARI-- 301

Query: 302  STFGSPPNDREGRAFSILRDVFLANVPVHNNN--FRPKCFYVAVMLRRMVEAMLNKDAMD 359
               G P  +R  RA   L +  L ++         R K +++  M+ +++E ++ +   D
Sbjct: 302  -AIGRPREERIRRAQRALDEYLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELIVGRRKPD 360

Query: 360  DKDYVGNKRLELSGQLVS-LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DKD+  NKRL+L+G L++ L+  +L    I EV+ +++   SK     + DL   I    
Sbjct: 361  DKDHYRNKRLKLAGDLLAQLIRHNLVTYFIREVKSSIERSYSK---YGKLDLKLVIKPGM 417

Query: 419  ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            +T  +   ++TGN+   +      G++Q+L R + + TL H+ RV    ++++     R 
Sbjct: 418  LTDRILHAMATGNWPGGK-----TGVSQLLDRTNLMSTLSHLRRVVSPLKRTQPHFEARE 472

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY-CLGVEDLELLSGE 537
            L P+QWG +CP +TPEG   GLVKNLALM HV+    E  +  + Y  LGV+ +E + GE
Sbjct: 473  LHPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIEPILYEKLGVKSIEEIIGE 532

Query: 538  -------ELHNPNSFL----VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV--FV 584
                   EL     +     V  NG ++G +   K  A+ +R +RR GKI   V+V    
Sbjct: 533  VKKAVTGELEEYPDYTSWSRVYLNGRLIGYYPDGKKLAEEIRNMRRRGKISIEVNVAHIQ 592

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVN 644
            +E    VYI +D GR+ RPL++ + G  ++K  H+ +L  G   F D +++G+IEYLD +
Sbjct: 593  DEHLNEVYINTDAGRIRRPLLVVENGKLKLKPEHIAKLKSGEWKFSDLVKKGIIEYLDAD 652

Query: 645  EENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            EE  A IAL     TP+ TH+EI    I+G+ A +IPY  HNQSPRN+Y+ AM KQ++G 
Sbjct: 653  EEEEAYIALTPDQITPEHTHMEIWTPAIMGITASIIPYAEHNQSPRNSYEAAMAKQSLGL 712

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
             + N   RMD+  +LL YPQ+PL+ TR +E+ GY++  AGQN  VAVMS++GY+IEDA++
Sbjct: 713  YSANFQRRMDTHGHLLHYPQKPLVQTRAMEVNGYNERPAGQNMVVAVMSFTGYNIEDALI 772

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT-----GPGAERMQVVHHSNL 819
            MNKSS+DRG  R    + YT +  +Y     D+I  P        GP A           
Sbjct: 773  MNKSSVDRGLARSTFFRLYTTVEYRYPGGQEDKITIPPSNVRGYRGPKAYEK-------- 824

Query: 820  LLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 879
                LD+DG+ +P   +K  DV I K SP     +     G   +R  ++  T  G  G 
Sbjct: 825  ----LDEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVGAGITRQDASVVTRHGEKG- 879

Query: 880  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 939
              +VD V + +D +G+  +K  +R  R PELGDKF+SRHGQKGV G +V Q+D PF+E G
Sbjct: 880  --IVDLVMVTTDIDGNRLVKARVRDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEG 937

Query: 940  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 999
            I PDLI+NPH FPSRMTVG++IE + GKA    GRF   + F     H + +E++  TL 
Sbjct: 938  IVPDLIINPHAFPSRMTVGQLIESIAGKAAALEGRFVDATPF-----HKEPIENLMITLK 992

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
            +HG+  +G + +Y G TG  L+  IF+G +YYQKL HMV DK+HAR  GP  +LTRQPTE
Sbjct: 993  RHGYPMSGYETMYDGRTGEILKTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTE 1052

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI 1119
            GRA+ GGLR GEME DCL+ +GAS+L+ E+++  SD   + VC +CG +GYY+      +
Sbjct: 1053 GRAKEGGLRFGEMEVDCLVGHGASLLLKEQMLDKSDKTTIYVCELCGHIGYYDRIRGKYV 1112

Query: 1120 CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            C   K+   +  +K+ YA KLL+QEL SM I+PRLKL +
Sbjct: 1113 CPIHKDKGKLKPVKVSYAFKLLVQELMSMCIMPRLKLED 1151


>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
            [Pongo abelii]
 gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Otolemur garnettii]
 gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1099

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1118 (38%), Positives = 642/1118 (57%), Gaps = 67/1118 (5%)

Query: 76   PSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTT 133
            P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E+  
Sbjct: 7    PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
             +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++
Sbjct: 67   TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126

Query: 194  KNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLN 236
             N V +   K       G   + + +S+    +  V  + +G           ++   L 
Sbjct: 127  TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 186

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
               +++PI++V +A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL 
Sbjct: 187  YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 244

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            ++  +  +   G     R   A  +L+   L +V V +     K +++  M+ R++ A L
Sbjct: 245  FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 302

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+
Sbjct: 303  GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFN 355

Query: 410  LSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    
Sbjct: 356  LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIG 415

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +
Sbjct: 416  RDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 475

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEK 587
            E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR   I    VS+  + +
Sbjct: 476  ENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIR 533

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVN 644
            +R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+ D +  G++EY+D  
Sbjct: 534  EREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTL 593

Query: 645  EENNALIALYEGDATPDT-------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAM 697
            EE   ++A+   D            TH EI P  ILGV A +IP+P HNQSPRNTYQ AM
Sbjct: 594  EEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM 653

Query: 698  GKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 757
            GKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY
Sbjct: 654  GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGY 713

Query: 758  DIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHS 817
            + ED+++MN+S++DRGF R +  + Y     K      +   +P R     E  Q + H+
Sbjct: 714  NQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA 768

Query: 818  NLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGP 876
              +   LDDDGL APG  +  +DV I K   L E    + S    T+ RY     +    
Sbjct: 769  --IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLR 822

Query: 877  DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+
Sbjct: 823  TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 882

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS 
Sbjct: 883  CEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISN 938

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQ
Sbjct: 939  LLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQ 998

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            P EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CG++   N +  
Sbjct: 999  PMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTH 1058

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1059 TYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1096


>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
 gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
          Length = 1141

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1171 (37%), Positives = 659/1171 (56%), Gaps = 84/1171 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFK 83
            + ++  F + +GLV+Q LDSF+ FV T +++++  +  I+    P+        I +RF 
Sbjct: 11   WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIVQSAPTAGTETQKRITVRFG 70

Query: 84   DVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
             + + +P +    DG +  + P+  R  D+TYA+P+ +++  ++ + +E   ++K+    
Sbjct: 71   QIYVSKPPIYTESDGRTITVFPNEARTRDLTYASPLFIDV--IKETVSELGVVDKHKYSR 128

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V  G +P+MLRS  CVL+G  + +L  LGECP D GGYFI+ G+EKV++ QE+++ N V 
Sbjct: 129  VPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVY 188

Query: 199  I----------------DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKI 242
            +                   +K + N S T S +  +S   I++        L    + +
Sbjct: 189  VFKKAQPATYTHYAEIRSVPEKSSRNPS-TLSMKLCRSPVAIRVS-------LPLVKQDV 240

Query: 243  PIMVVMKAMGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            P+ V+ +A+G  SD+E++  +    D     LL  SIEE   + +  Q  AL+Y+ GK +
Sbjct: 241  PLFVLYRALGFLSDKEIIDHILYEDDDEMFELLKESIEE--GMVVQDQNVALDYI-GK-R 296

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
             +  G+P   R   A  +L    L ++         K +++  +++R++   L +   DD
Sbjct: 297  TAPVGTPQEKRIMMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDD 356

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            +D+ G KR++LSG L++ LF  LFK + ++  + +   +        F+++  +    IT
Sbjct: 357  RDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIEN---GREFNIALGLKASIIT 413

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             G    L+TGN+ D  +    R G+ QVL R +F+ TL H+ RV+   EK  K++ PR L
Sbjct: 414  QGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQL 473

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG+ACGLVKNL+LM +++     GPLI      GVE LE +S  +L
Sbjct: 474  HNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLEEISNFQL 533

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
            +      V  NG+ +G H  P      ++ LRR+ ++ + VS+  + +++ + I SD GR
Sbjct: 534  NTATKVFV--NGVWIGIHSDPVYLVKSLKLLRRSLEMDKEVSIVRDIREKEIRIQSDAGR 591

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY----- 654
             CRPL++       I E  +  L  G   +D+ + EG IE+LDV EE  ++IA+      
Sbjct: 592  PCRPLMVVKDNKLVITEEDIGRLRRGEIKWDNLIGEGFIEFLDVEEEEMSMIAMSTKVLD 651

Query: 655  -----EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
                   D     TH EI P  ILG+ A  IP+P HNQSPRNTYQ AMGKQAMG  A N 
Sbjct: 652  DERKSSSDVKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNF 711

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
            L RMD+L  +L YPQ+PL+TT+++E + + +L +GQNA VA+  YSGY+ ED+++MN+S+
Sbjct: 712  LLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSVIMNQSA 771

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            +DRG  R    + YT          ++   +P+R         V+   NL    LDDDGL
Sbjct: 772  IDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPNRGS-------VLRMKNLNYNKLDDDGL 824

Query: 830  AAPGEIIKPNDVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
              PG  +  +DV I K +P+    R +  +P         + R+T      ET +VD V 
Sbjct: 825  INPGTRVTGDDVLIGKITPILDPERSTKETPVYVYKDSSTAMRRT------ETGIVDTV- 877

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + ++K+G    K  +R  R P++GDKF+SRH QKG  G  ++QED PF+  GI PD+I+N
Sbjct: 878  IVTNKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIIN 937

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE L GK     G     + F   SG   +V  IS  L  +GF   G
Sbjct: 938  PHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPF---SGM--SVNEISARLKSYGFQQRG 992

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G+TG  L+A IF GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGL
Sbjct: 993  LEVMYNGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGL 1052

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC+I++GAS  + ERLM  SD +   VC +CGLL     K+    C  C N  
Sbjct: 1053 RFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCNICGLLAMGGSKVNE--CKGCSNTT 1110

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            N+S +++PYA KLLIQEL  MNI PR++  E
Sbjct: 1111 NVSIVEIPYAFKLLIQELMGMNIAPRIRFEE 1141


>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
            magnipapillata]
          Length = 1184

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1176 (36%), Positives = 666/1176 (56%), Gaps = 83/1176 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID----------PSIF-L 80
            + ++  + + +GLV+Q LDSF+ F+   +++IV  +  I    +          P+ + L
Sbjct: 31   WTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVEESPPIELQAETQYTENEIEEPTRYQL 90

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKND 138
            +F+ + + +P+    DG  + + P+  RL ++TY+AP+ V+I + +  S  E  T E + 
Sbjct: 91   KFEQIYLSKPTHWEKDGAPKPMMPNEARLRNLTYSAPLYVDISKTITRSGQEPETEEHSK 150

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            + IG+IPIMLRS  CVL G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V 
Sbjct: 151  IYIGKIPIMLRSTYCVLSGLVDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 210

Query: 199  I--DTDKKGNINASVTSSTETVKSKT---VIQM------------EKGKMYLLLNQFVKK 241
            +    D K   +  + S  E     T    I M              G+  +    ++++
Sbjct: 211  VFHKKDSKYAYSCEIRSCLEQSSRPTSTMFISMLAKGGGGGAKKSAIGQRIIATIPYIRQ 270

Query: 242  -IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
             IPIM+V +A+G  SD+++++ +     D     ++ PS++E     +  Q  AL ++  
Sbjct: 271  EIPIMIVFRALGFVSDRDILEHIIYDFTDQEMMEMVKPSLDEA--FVVQEQNVALNFIGT 328

Query: 298  KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
            +  R   G     R   A  IL+   L +V   +     K +++  M+ R++ A L +  
Sbjct: 329  RGARP--GVTKEKRIKYAREILQKEMLPHVGTSDFCETKKAYFLGYMVHRILLAALGRRE 386

Query: 358  MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQF 413
            +DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       +   F +   
Sbjct: 387  LDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------KGKDFKIELA 439

Query: 414  IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
            I   +IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K
Sbjct: 440  IKTKTITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 499

Query: 473  VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
            ++ PR L  + WGM+CP +TPEG+A GLVKNLALM +++   +  P++       +E+LE
Sbjct: 500  LARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWAMENLE 559

Query: 533  LLSGEELHNPNSFLVIFNGLILGKHRRP-KCFADVMRKLRRAGKIGEFVSVFVNEKQRCV 591
             +S   + +     V  NG  +G HR P +    + R  R+   I   VS+  + + + +
Sbjct: 560  EISPSAIKDATKIFV--NGCWVGIHRDPEQLILTLRRLRRQMDIIVSEVSMVRDIRDKEI 617

Query: 592  YIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS---FDDFLREGLIEYLDVNEENN 648
             I +D GRVCRPL+I +     +K+ H+ +L +   +   + D + +G++EY+DVNEE  
Sbjct: 618  RIYTDAGRVCRPLLIVENQKLLLKKSHVDQLKEREMNNFGWQDLVSKGVVEYIDVNEEET 677

Query: 649  ALIALY-------EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
            A+IA+        E   +   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 678  AMIAMSLEDLEEREHKYSSTYTHSEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 737

Query: 702  MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
            MG    N   RMD+L ++L YPQ+PL+TTR+++ + + +L AG N+ VA+ SY+GY+ ED
Sbjct: 738  MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMDFLKFRELPAGINSIVAIASYTGYNQED 797

Query: 762  AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLL 821
            ++++N S+++RG  R +  + Y     +      ++  +P+R      R  +        
Sbjct: 798  SVLLNASAINRGLYRSVFYRSYRDEESRKGLDQEEKFEKPNRDETTGMRAAIYDK----- 852

Query: 822  LILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP---DG 878
              LDDDGL  PG  +  +DV I K   L           +TDS+ +  ++          
Sbjct: 853  --LDDDGLIPPGSRVSGDDVIIGKTVTLP------DDEDETDSQAKHFKKRDASTFLRAS 904

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V L  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  
Sbjct: 905  ETGIVDQVMLTINEEGYKFCKIKVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTCE 964

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            GI PD+I+NPH  PSRMT+G +IE L GK   + G     + F +    A  V+ +S  L
Sbjct: 965  GISPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND----AVNVQLVSSLL 1020

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++Y+G TG  L A +F+GP YYQ+LKHMV DK+H+R  GP  +LTRQP 
Sbjct: 1021 QEYGYHLRGNEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPM 1080

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SD + V VC +CGL+   N +    
Sbjct: 1081 EGRSRDGGLRFGEMERDCQIAHGAAQFLNERLFEASDAYRVHVCNLCGLIAIANLRNNTF 1140

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C +CKN   +S +++PYACKLL QEL SM+I PR+
Sbjct: 1141 ECRSCKNKTQVSQIRIPYACKLLFQELMSMSIAPRM 1176


>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Apis florea]
          Length = 1175

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1170 (37%), Positives = 658/1170 (56%), Gaps = 77/1170 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-IDPSI--FLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  +   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIENPVRHLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLXNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IPIMVV 247
            G       I + +  S+    +  +  M K          G+  + +  ++K+ IPIM+V
Sbjct: 213  GKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V + +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P      +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+ RPL+I +     +K+ H   +KE       + + +  G++EY+D  EE   +IA+  
Sbjct: 620  RISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSP 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  EDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N 
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N +   LDDD
Sbjct: 800  SAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NAIYDKLDDD 852

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 853  GIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTK-RDASTFLR--NSETGIVDQVM 909

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  G+ PD+I+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIIN 969

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 970  PHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLRG 1025

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1026 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +     C  CKN  
Sbjct: 1086 RFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKT 1145

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             IS ++LPYA KLL QEL +MNI PRL +A
Sbjct: 1146 QISQIRLPYAAKLLFQELMAMNIAPRLMVA 1175


>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
            [Encephalitozoon cuniculi]
          Length = 1141

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1163 (37%), Positives = 659/1163 (56%), Gaps = 68/1163 (5%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFK 83
            + ++  F + +GLV+Q LDSF+ FV T +++++  +  I+    P+        I +RF 
Sbjct: 11   WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIETQKRIAVRFG 70

Query: 84   DVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
             + + +P +    DG +  + P+  R+ D+TYA+P+ +++   + + +E   ++K+    
Sbjct: 71   QIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDV--TKETLSELGVVDKHKYSR 128

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V  G +P+MLRS  CVLYG  + +L  LGECP D GGYFI+ G+EKV++ QE+++ N V 
Sbjct: 129  VPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVY 188

Query: 199  IDTDKKGNIN---ASVTSSTE-TVKSKTVIQME----KGKMYLLLNQFVKKIPIMVVMKA 250
            +    +       A + S  E + ++ + + M+     G + + L    + +P+ V+ +A
Sbjct: 189  VFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVLYRA 248

Query: 251  MGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            +G  SD+E++  +    D     LL  SIEE     +  Q  AL+Y+ GK + +  G+P 
Sbjct: 249  LGFLSDKEIIDHILYEDDEEMFELLKESIEE--GTVVQDQNVALDYI-GK-RSAPIGTPQ 304

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A  +L    L ++         K +++  +++R++   L +   DD+D+ G KR
Sbjct: 305  EKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKR 364

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            ++LSG L++ LF  LFK +  +  + +   +        F+++  +    IT G    L+
Sbjct: 365  MDLSGPLLASLFRTLFKKLCVDTTRHMQKCIEN---GREFNIALGLKASIITQGFRYALA 421

Query: 429  TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            TGN+ D  +    R G+ QVL R +F+ TL H+ RV+   EK  K++ PR L  + WGM+
Sbjct: 422  TGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMV 481

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP +TPEG+ACGLVKNL+LM +++     GPLI      GVE LE +S  +L       V
Sbjct: 482  CPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLEEISTSQLDAATKIFV 541

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG+ +G H  P      ++ LRR+ ++ + VS+  + +++ + + SD GR CRPL++ 
Sbjct: 542  --NGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVV 599

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY----------EGD 657
                  I    +++L  G   +D+ +  G IE+LDV EE  ++IA+             D
Sbjct: 600  KDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSD 659

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             +   TH EI P  ILG+ A  IP+P HNQSPRNTYQ AMGKQAMG  A N L RMD+L 
Sbjct: 660  VSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLS 719

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
             +L YPQ+PL+TT+++E + + +L +GQNA VA+  YSGY+ ED+I+MN+S++DRG  R 
Sbjct: 720  NILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRS 779

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
               + YT          ++   +P R   GA    V+   NL    LDDDGL +PG  + 
Sbjct: 780  FFYRTYTDQESMSRPGVNEEFCKPSR---GA----VLRMKNLNYNKLDDDGLISPGTRVT 832

Query: 838  PNDVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
             +DV I K +P+    R +  +P         + R+T      ET +VD V + ++K+G 
Sbjct: 833  GDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRT------ETGIVDTV-IVTNKDGY 885

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
               K  +R  R P++GDKF+SRH QKG  G  ++QED PF+  GI PD+I+NPH  PSRM
Sbjct: 886  KFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRM 945

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G +IE L GK     G     + F        TV+ IS  L  +GF   G +++Y+G+
Sbjct: 946  TIGHLIECLLGKVSAMSGEEGDATPFS-----GVTVDGISSRLKSYGFQQRGLEVMYNGM 1000

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  L+A +F GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 1001 TGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERD 1060

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            C+I++GAS  + ERLM  SD +   VC  CGLL     K+    C  C N  N+S +++P
Sbjct: 1061 CIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVNE--CKGCNNTTNVSMVEIP 1118

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YA KLLIQEL  MNI PR++  E
Sbjct: 1119 YAFKLLIQELMGMNIAPRIRFEE 1141


>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Megachile rotundata]
          Length = 1175

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1170 (37%), Positives = 658/1170 (56%), Gaps = 77/1170 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-IDPSI--FLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  +   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIENPVRHLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IPIMVV 247
            G       I + +  S+    +  +  M K          G+  + +  ++K+ IPIM+V
Sbjct: 213  GKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V + +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 389  GNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFID-------RGKDFNLELAIKTKIIT 441

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 442  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 501

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 502  HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 561

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P      +RKLRR   I    VS+  + + R + I +D G
Sbjct: 562  ADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 619

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+ RPL+I +     +K+ H   +KE       + + +  G++EY+D  EE   +IA+  
Sbjct: 620  RISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSP 679

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 680  EDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N 
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 799

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N +   LDDD
Sbjct: 800  SAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NAIYDKLDDD 852

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 853  GIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTK-RDASTFLR--NSETGIVDQVM 909

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  G+ PD+I+N
Sbjct: 910  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIIN 969

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 970  PHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLRG 1025

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1026 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +     C  CKN  
Sbjct: 1086 RFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKT 1145

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             IS ++LPYA KLL QEL +MNI PRL +A
Sbjct: 1146 QISQVRLPYAAKLLFQELMAMNIAPRLMVA 1175


>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
 gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
          Length = 1127

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1144 (38%), Positives = 658/1144 (57%), Gaps = 57/1144 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ L+  F+K +GL    + SFN F++  + +IV  + ++V      + L  + + +G 
Sbjct: 23   DRWALVERFIKDKGLASHQIKSFNDFLDKRLPRIVE-DFKVVDTEIKGLKLVLEKIEVGW 81

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPI-LVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P +   DG    + P   RL + TY+AP+ L  + YV        T       IG +PIM
Sbjct: 82   PRIKESDGSESLIYPMEARLRNATYSAPLYLTAVLYVDDEPYATETF-----YIGELPIM 136

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            ++S RC L     +E  +  E P D GGYFII G+E+V++ QE L  +R I D   K ++
Sbjct: 137  VKSKRCNLSRLRPSEYPKRFEDPQDFGGYFIINGSERVIISQEDLVADRPIYDKGDKPSV 196

Query: 208  N--ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A   S+    +S   +++ K G +Y  L+    KIP  + MKA+G+E+D++VV+ V 
Sbjct: 197  KFLAKTISTGIGYRSTLTVELNKDGVIYATLSAIPVKIPFPIYMKALGLETDEDVVKAVS 256

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP     LLPS+   AN    T+E AL+Y+ GKV     G P   R  RA  +L   FL
Sbjct: 257  DDPDIQKELLPSLV-VANQIAITREDALDYIGGKV---AVGQPRPVRVERALQLLDRYFL 312

Query: 325  ANVPVHNNNFRP-------KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             ++     + +        K   +  +++ +VE  L +   DDKD+V NKR+ L G L++
Sbjct: 313  PHLGTTVQDEKKQQEIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMT 372

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKR 436
             LF  +FK ++ E++      L K     R    Q IVR D IT  + + L+TGN+    
Sbjct: 373  QLFRTVFKQLLQELRSQ----LEKYYARGRIPHLQTIVRPDIITERVRQALATGNW---- 424

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                + G++Q+L R +++ TL ++ RV     +++     R L P+QWG LC  +TPEG+
Sbjct: 425  -VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVETPEGQ 483

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
              GLVKNLAL+  +TT  +E  +  +    GV  +     E +     +L   NG ++G 
Sbjct: 484  NVGLVKNLALLAEITTGVDENEVEQMLLQQGVVPILKAREEGIRGAEVYL---NGRLIGI 540

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSV-FVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
            H  P+     +R LRR GKI + +++ ++N     VY+ SDGGR+ RPL++ + G  ++ 
Sbjct: 541  HPEPEELVKTVRSLRRQGKISDEINIAYLNG---VVYVNSDGGRIRRPLLVVEDGKLKLT 597

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL-YEGDATPDTTHIEIEPFTILG 674
            +  ++ +  G  ++DD L+ G++EYLD +EE NA IA+  EGD + + TH+EI P +ILG
Sbjct: 598  KDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHIAVDPEGDLS-NYTHVEIIPSSILG 656

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             IA +IPY  HNQSPRN Y+ AM KQ++G    N L ++DS  ++L YP+RP++TTR +E
Sbjct: 657  AIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLE 716

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            LVGY K  AGQNA VA+++Y+GY+IEDA+++NK+S++RG  R +  + Y    Q+Y    
Sbjct: 717  LVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQRYPGGE 776

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             D+I  PD +  G    +   H       LD+DG+A P   +  ++V I K SP   R  
Sbjct: 777  EDKIEIPDSSVKGYRGPEAYSH-------LDEDGIAPPEVYVSSSEVLIGKTSP--PRFY 827

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                T +     R A    +   GE  +VDRV +     G+  +K  +R  R PELGDKF
Sbjct: 828  TTLETERILKERRDASVAVR--RGEKGIVDRVIITESPEGNKLVKVRLRELRIPELGDKF 885

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKGV G +++QED PF+E GI PD+I+NPH  PSRMTV +++E + GK G + G 
Sbjct: 886  ASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAATGN 945

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
                + F          E + + L+K G+ ++GK+++YSGITG  L A IF+G +YYQKL
Sbjct: 946  LVDATPF-----EGVKEEDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGIVYYQKL 1000

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
             HMV DK+HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GAS L++ERL+ SS
Sbjct: 1001 HHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESS 1060

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D + + VC +CGL  Y + K     C    +    + + +PYA KLL+QEL ++ I P+L
Sbjct: 1061 DKYTMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFAKVTVPYAFKLLLQELIALGIYPKL 1120

Query: 1155 KLAE 1158
            +L+E
Sbjct: 1121 ELSE 1124


>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
 gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
          Length = 1124

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1149 (37%), Positives = 647/1149 (56%), Gaps = 54/1149 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            ++ D++ ++  + K RGLV+QHLDSFN F+   +++I+     I + I P + +R   +R
Sbjct: 3    TIDDRWAIVEAYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQAEITTEI-PGLKIRLGKIR 61

Query: 87   IGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            +G+P +   D   +++ P   RL ++TYAAP+ + +  ++ +     T    +V IG IP
Sbjct: 62   VGKPRVREADKGDKEITPMEARLRNLTYAAPVYLEMTPIENNIEGDLT----EVYIGDIP 117

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S           +L  +GE P DPGGYFI+ G+E+V++ QE L+ NRV+ D  K G
Sbjct: 118  IMLKSIADPTSEFTSEKLVEIGEDPKDPGGYFIVNGSERVIVTQEDLATNRVLTDVGKTG 177

Query: 206  -NIN--ASVTSSTETVKSK-TVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +   T+ +++   +++       KIP  ++M+A+G+E+D+E+  
Sbjct: 178  SNITHTAKIISSTSGYRVPITIEKLKDSTIHVSFPAVPGKIPFAILMRALGIETDEEITL 237

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     LLPSIE+ ++  I +++ AL+++  ++     G     R  +A  +L  
Sbjct: 238  AVSLDPDIQNELLPSIEQASS--IISKDDALDFIGNRI---AIGQKREMRIQKAEQVLDK 292

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++  + ++   K +Y+A  + +++E  L +   DDKD+  NKRL+L+G L + LF 
Sbjct: 293  YFLPHIGTNASDRTAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLFASLFR 352

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   V  +     R  R  ++  + +D I+  +   L+TGN+        R
Sbjct: 353  VAFKAFVKDL---VFQLEKSKVRGRRLAVNALVRQDIISERIRHALATGNW-----VGGR 404

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 405  TGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 464

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL-----SGEELHN--PNSFLVIFNGLIL 554
            KNLAL+  ++    E  +  L Y LGV  +E +     S EE      N   VI NG ++
Sbjct: 465  KNLALLGQISVGVNEKSVERLLYNLGVIPIEEVIKKYRSQEEKSEDYENWSKVILNGRLI 524

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVN--EKQRCVYIASDGGRVCRPLVIADKGIS 612
            G +      A+ +R+ RR G++ + V+V     E    VYI SD GRV RPL++   G  
Sbjct: 525  GYYPNGSELAEKIREKRREGELSDEVNVNYTRTETYNEVYINSDSGRVRRPLIVVRHGKP 584

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             + +  ++ L  G  +FD  +REG IE+LD  EE NA IAL   D T D TH+EI    I
Sbjct: 585  LVTKEDIENLKKGKITFDTLIREGKIEFLDAEEEENAYIALEPKDVTKDHTHLEIWTPAI 644

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQ+P++ TR 
Sbjct: 645  LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRA 704

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            +E +GY +  AG NA  A+MSY+GY++EDA++MNKSS++RG  R    + Y+A   KY  
Sbjct: 705  LEAIGYTERPAGNNAIFALMSYTGYNMEDAVIMNKSSIERGMFRSTFFRLYSAEEIKYPG 764

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---L 849
               D IL P+   PG    +   +  L    L+ +G+ +P   +K  DV I K SP   L
Sbjct: 765  GQEDEILLPE---PGVRGYKGKDYYRL----LESNGIVSPEVDVKGGDVLIGKVSPPRFL 817

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            +    +     + D+   +         GE   VD V +     G+  +K  +R  R PE
Sbjct: 818  QEFKELSPDQAKRDTSIITRH-------GERGTVDLVLVTETSEGNKLVKVRVRDLRIPE 870

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKF++RHGQKGV G I+ Q D P++  G+ PD+I+NPH  PSRMTVG+++E L GK  
Sbjct: 871  IGDKFATRHGQKGVVGMIIPQVDMPYTTSGLTPDIILNPHALPSRMTVGQIMEALSGKFV 930

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
             + G     + F     +   +E I + L+  G+  +G +++Y G TG  L+  I  G +
Sbjct: 931  AATGESIDATPF-----YNIPIEEIQKKLLNSGYLGDGSEVVYDGRTGEKLKGRILFGIV 985

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKL HMV DKMH RG GP  +LTRQPTEGRAR GGLR GEMERDCLI YGA+MLI +R
Sbjct: 986  YYQKLHHMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDR 1045

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L+ +SD   V VC  CG +G+Y+      IC    +   +  + + YA KLL+QEL SM 
Sbjct: 1046 LLDNSDKATVYVCEQCGYVGWYDRSKNKYICPIHGDKSTLYPVAVSYAFKLLLQELMSMV 1105

Query: 1150 IVPRLKLAE 1158
            I P+L L E
Sbjct: 1106 IAPKLVLGE 1114


>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1245

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1223 (35%), Positives = 671/1223 (54%), Gaps = 132/1223 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI----------VSGIDPSIF 79
            D + ++  F + +GLV+Q L+SFN F+   +++IV  + R+          V+G +   +
Sbjct: 52   DYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETRRY 111

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------- 123
             + F  + + + + T +DG +  L P   RL ++TY+AP+ V+I+               
Sbjct: 112  EISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEA 171

Query: 124  -----------VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLD 172
                       V+G+  EKT+       IG++P+M+RS  C+L+G  + +   +GECP D
Sbjct: 172  DWQPAVGDDGEVEGAEEEKTS-------IGKVPVMVRSNFCLLHGLPDDQCHEIGECPYD 224

Query: 173  PGGYFIIKGTEKVLLIQEQLSKNRVII---DTDKKGNINASVTSSTET---VKSKTVIQM 226
             GGYFII G+EKVL+ QE+++ N V +       +    A + S  E    V + T ++M
Sbjct: 225  QGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRM 284

Query: 227  EK-------GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                     G + + L      IP++VV +A+G+  D++V+  +     D     +L PS
Sbjct: 285  YARASGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPS 344

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            IEE  +  +  ++ AL+++  + +     +P   R+  AF IL   FL +V         
Sbjct: 345  IEE--SFAVQDRDTALDFIGRRGQHEK--APRAQRQRAAFDILHKEFLPHVSTAEGFESK 400

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
            K +++  M+ R+  A L +  +DD+D+ GNKRL+L+G L++ +F  +F  +  ++ + + 
Sbjct: 401  KAYFLGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLK 460

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGT 456
              + +   +  F L+  I  ++IT GL+  L+TGN+  KR    R G++QVL R +F  T
Sbjct: 461  KCVEQ---NKEFALNMAIRPNTITDGLKYALATGNWG-KRDNT-RAGVSQVLNRYTFAST 515

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R +    +  K + PR L  + WGM+CP +TPEG ACGLVKNLALM++++     
Sbjct: 516  LSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYS 575

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
             P++      G+EDL     E    P +  V  NG+ +G HR      + + ++RR G++
Sbjct: 576  APVMEFLEEWGLEDL----SEYQDAPTATKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQL 631

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----------GISRIKEHHMKELLDGV 626
               VS+  + ++R + + +D GRVCRPL I D+           I RI +   + LL G 
Sbjct: 632  KYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSG- 690

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGD----------------------------- 657
             ++D  L EG++EY+D  EE   LIA+   D                             
Sbjct: 691  -AWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAA 749

Query: 658  ------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                   +   TH+EI P  ILGV A ++P+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 750  RIKSTVWSQQYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQL 809

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+++ +L YPQ+PL TTR++E + + +L AGQNA VA+M YSGY+ ED+++MN+SS+D
Sbjct: 810  RMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSID 869

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R +  + YT   +      ++ I +PDR     E +++ H +      LD DGL A
Sbjct: 870  RGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRN----ETLRMKHGTGDRYAKLDVDGLVA 925

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +  +D+ I K +PL      +    Q  ++ R      K    E  VVD+V L ++
Sbjct: 926  PGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTK-RDISTPLKST--EQGVVDQVMLSTN 982

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
              G++ +K  +R TR P++GDKF+SRHGQKG  G   +QED PF+  G+ PD+I+NPH  
Sbjct: 983  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 1042

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G ++E L  K     G     + F E      TVE++S+ L   G+   G +++
Sbjct: 1043 PSRMTIGHLVECLLSKVSTLTGAEGDATPFTEL-----TVEAVSKVLRAKGYQSRGFEVL 1097

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y G TG  LQA ++ GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GE
Sbjct: 1098 YHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGE 1157

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDC+I++G +  + ER+  SSD F + VC VCGL+   N K +   CS C+N   IS 
Sbjct: 1158 MERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQ 1217

Query: 1132 MKLPYACKLLIQELQSMNIVPRL 1154
            + +PYA KLL QELQ+MNI  R+
Sbjct: 1218 VYIPYAAKLLFQELQAMNIACRM 1240


>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
 gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1141

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1163 (37%), Positives = 659/1163 (56%), Gaps = 68/1163 (5%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFK 83
            + ++  F + +GLV+Q LDSF+ FV T +++++  +  I+    P+        I +RF 
Sbjct: 11   WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIETQKRIAVRFG 70

Query: 84   DVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
             + + +P +    DG +  + P+  R+ D+TYA+P+ +++   + + +E   ++K+    
Sbjct: 71   QIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDV--TKETLSELGVVDKHKYSR 128

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V  G +P+MLRS  CVLYG  + +L  LGECP D GGYFI+ G+EKV++ QE+++ N V 
Sbjct: 129  VPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVY 188

Query: 199  IDTDKKGNIN---ASVTSSTE-TVKSKTVIQME----KGKMYLLLNQFVKKIPIMVVMKA 250
            +    +       A + S  E + ++ + + M+     G + + L    + +P+ V+ +A
Sbjct: 189  VFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVLYRA 248

Query: 251  MGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            +G  SD+E++  +    D     LL  SIEE     +  Q  AL+Y+ GK + +  G+P 
Sbjct: 249  LGFLSDKEIIDHILYEDDEEMFELLKESIEE--GTVVQDQNVALDYI-GK-RSAPIGTPQ 304

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A  +L    L ++         K +++  +++R++   L +   DD+D+ G KR
Sbjct: 305  EKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKR 364

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            ++LSG L++ LF  LFK +  +  + +   +        F+++  +    IT G    L+
Sbjct: 365  MDLSGPLLASLFRTLFKKLCVDTTRHMQKCIEN---GREFNIALGLKASIITQGFRYALA 421

Query: 429  TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            TGN+ D  +    R G+ QVL R +F+ TL H+ RV+   EK  K++ PR L  + WGM+
Sbjct: 422  TGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMV 481

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP +TPEG+ACGLVKNL+LM +++     GPL+      GVE LE +S  +L       V
Sbjct: 482  CPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFV 541

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
              NG+ +G H  P      ++ LRR+ ++ + VS+  + +++ + + SD GR CRPL++ 
Sbjct: 542  --NGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVV 599

Query: 608  DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY----------EGD 657
                  I    +++L  G   +D+ +  G IE+LDV EE  ++IA+             D
Sbjct: 600  KDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSD 659

Query: 658  ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             +   TH EI P  ILG+ A  IP+P HNQSPRNTYQ AMGKQAMG  A N L RMD+L 
Sbjct: 660  VSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLS 719

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
             +L YPQ+PL+TT+++E + + +L +GQNA VA+  YSGY+ ED+I+MN+S++DRG  R 
Sbjct: 720  NILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRS 779

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
               + YT          ++   +P R   GA    V+   NL    LDDDGL +PG  + 
Sbjct: 780  FFYRTYTDQESMSRPGVNEEFCKPSR---GA----VLRMKNLNYNKLDDDGLISPGTRVT 832

Query: 838  PNDVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
             +DV I K +P+    R +  +P         + R+T      ET +VD V + ++K+G 
Sbjct: 833  GDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRT------ETGIVDTV-IVTNKDGY 885

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
               K  +R  R P++GDKF+SRH QKG  G  ++QED PF+  GI PD+I+NPH  PSRM
Sbjct: 886  KFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRM 945

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G +IE L GK     G     + F        TV+ IS  L  +GF   G +++Y+G+
Sbjct: 946  TIGHLIECLLGKVSAMSGEEGDATPFS-----GVTVDGISSRLKSYGFQQRGLEVMYNGM 1000

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  L+A +F GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 1001 TGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERD 1060

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            C+I++GAS  + ERLM  SD +   VC  CGLL     K+    C  C N  N+S +++P
Sbjct: 1061 CIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVNE--CKGCNNTTNVSMVEIP 1118

Query: 1136 YACKLLIQELQSMNIVPRLKLAE 1158
            YA KLLIQEL  MNI PR++  E
Sbjct: 1119 YAFKLLIQELMGMNIAPRIRFEE 1141


>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
            [Canis lupus familiaris]
 gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Felis catus]
          Length = 1099

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1117 (37%), Positives = 640/1117 (57%), Gaps = 65/1117 (5%)

Query: 76   PSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTT 133
            P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E+  
Sbjct: 7    PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
             +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++
Sbjct: 67   TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126

Query: 194  KNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLN 236
             N V +   K       G   + + +S+    +  V  + +G           ++   L 
Sbjct: 127  TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 186

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
               +++PI++V +A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL 
Sbjct: 187  YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 244

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            ++  +  +   G     R   A  +L+   L +V V +     K +++  M+ R++ A L
Sbjct: 245  FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 302

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+
Sbjct: 303  GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFN 355

Query: 410  LSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    
Sbjct: 356  LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIG 415

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +
Sbjct: 416  RDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 475

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEK 587
            E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR   I    VS+  + +
Sbjct: 476  ENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIR 533

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVN 644
            +R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+ D +  G++EY+D  
Sbjct: 534  EREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTL 593

Query: 645  EENNALIALYEGDATPDT-------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAM 697
            EE   ++A+   D            TH EI P  ILGV A +IP+P HNQSPRNTYQ AM
Sbjct: 594  EEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM 653

Query: 698  GKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 757
            GKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY
Sbjct: 654  GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGY 713

Query: 758  DIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHS 817
            + ED+++MN+S++DRGF R +  + Y     K      +   +P R     E  Q + H+
Sbjct: 714  NQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA 768

Query: 818  NLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 877
              +   LDDDGL APG  +  +DV I K   L      +     T+ RY     +     
Sbjct: 769  --IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE---GTNRRYTKRDCSTFLRT 823

Query: 878  GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 937
             ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+ 
Sbjct: 824  SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC 883

Query: 938  RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISET 997
             GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  
Sbjct: 884  EGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNL 939

Query: 998  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP 1057
            L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP
Sbjct: 940  LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 999

Query: 1058 TEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKA 1117
             EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CG++   N +   
Sbjct: 1000 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHT 1059

Query: 1118 GICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1060 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1096


>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
            13514]
 gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum arsenaticum DSM
            13514]
          Length = 1127

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1144 (38%), Positives = 656/1144 (57%), Gaps = 57/1144 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ L+  F+K +GL    + SFN F++  + +IV  + ++V      + L  + + +G 
Sbjct: 23   DRWALVERFIKDKGLASHQIKSFNDFLDKKLPRIVE-DFKVVDTEIKGLKLVLEKIEVGW 81

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPI-LVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P +   DG    + P   RL + TY+AP+ L  + YV        T       IG +PIM
Sbjct: 82   PRIKESDGSESLIYPMEARLRNATYSAPLYLTAVLYVDDEPYATETF-----YIGELPIM 136

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            ++S RC L     +E  +  E P D GGYFII G+E+V++ QE L  +R I D   K ++
Sbjct: 137  VKSKRCNLTRLRPSEYPKRFEDPQDFGGYFIINGSERVIISQEDLVADRPIYDKGDKPSV 196

Query: 208  N--ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A   S+    +S   +++ K G +Y  L+    KIP  + MKA+G+E+D++VV+ V 
Sbjct: 197  KFLAKTISTGIGYRSTLTVELNKDGVIYATLSAIPVKIPFPIYMKALGLETDEDVVKAVS 256

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP     LLPS+   AN    T+E AL+Y+ GKV     G P   R  RA  +L   FL
Sbjct: 257  DDPDIQKELLPSLV-VANQIAITREDALDYIGGKV---AVGQPRPVRVERALQLLDRYFL 312

Query: 325  ----ANVPVHNNNFR---PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
                  VP           K   +  +++ +VE  L +   DDKD+V NKR+ L G L++
Sbjct: 313  PHLGTTVPDEKKQQEIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMT 372

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKR 436
             LF  +FK ++ E++      L K     R    Q IVR D IT  + + L+TGN+    
Sbjct: 373  QLFRTVFKQLLQELRSQ----LEKYYARGRIPHLQTIVRPDIITERVRQALATGNW---- 424

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                + G++Q+L R +++ TL ++ RV     +++     R L P+QWG LC  +TPEG+
Sbjct: 425  -VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVETPEGQ 483

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
              GLVKNLAL+  +TT  +E  +  +    GV  +     E +     +L   NG ++G 
Sbjct: 484  NVGLVKNLALLAEITTGVDENDVEQMLLQQGVVPILKAREEGVRGAEVYL---NGRLIGI 540

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSV-FVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
            H  P+     +R LRR GKI + +++ ++N     VY+ SDGGR+ RPL++ + G  ++ 
Sbjct: 541  HPEPEELVKTVRSLRRQGKISDEINIAYLNG---VVYVNSDGGRIRRPLLVVEDGKLKLT 597

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL-YEGDATPDTTHIEIEPFTILG 674
            +  ++ +  G  ++DD L+ G++EYLD +EE NA IA+  EGD + + TH+EI P +ILG
Sbjct: 598  KDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHIAVDPEGDLS-NYTHVEIIPSSILG 656

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
             IA +IP+  HNQSPRN Y+ AM KQ++G    N L ++DS  ++L YP+RP++TTR +E
Sbjct: 657  AIASIIPFLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLE 716

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            LVGY K  AGQNA VA+++Y+GY+IEDA+++NK+S++RG  R +  + Y    Q+Y    
Sbjct: 717  LVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQRYPGGE 776

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             D+I  PD +  G    +   H       LD+DG+A P   +  ++V I K SP   R  
Sbjct: 777  EDKIEIPDSSVKGYRGPEAYSH-------LDEDGIAPPEVYVSSSEVLIGKTSP--PRFY 827

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
                T +     R A    +   GE  +VDRV +     G+  +K  +R  R PELGDKF
Sbjct: 828  TTLETERILKERRDASVAVR--RGEKGIVDRVIVTESPEGNKLVKVRLRELRIPELGDKF 885

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKGV G +++QED PF+E GI PD+I+NPH  PSRMTV +++E + GK G + G 
Sbjct: 886  ASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQLLESMAGKVGAATGN 945

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
                + F          E + + L+K G+ ++GK+++YSGITG  L A IF+G +YYQKL
Sbjct: 946  LVDATPF-----EGVKEEDLRKLLLKLGYKWDGKEVMYSGITGEKLVADIFIGIVYYQKL 1000

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
             HMV DK+HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GAS L++ERL+ SS
Sbjct: 1001 HHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESS 1060

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D + + VC +CGL  Y + K     C    +    + + +PYA KLL+QEL ++ I P+L
Sbjct: 1061 DKYTMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFAKVTVPYAFKLLLQELIALGIYPKL 1120

Query: 1155 KLAE 1158
            +L+E
Sbjct: 1121 ELSE 1124


>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
          Length = 1099

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1118 (37%), Positives = 641/1118 (57%), Gaps = 67/1118 (5%)

Query: 76   PSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTT 133
            P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E+  
Sbjct: 7    PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
             +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++
Sbjct: 67   TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126

Query: 194  KNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLN 236
             N V +   K       G   + + +S+    +  V  + +G           ++   L 
Sbjct: 127  TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 186

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
               +++PI++V +A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL 
Sbjct: 187  YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 244

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            ++  +  +   G     R   A  +L+   L +V V +     K +++  M+ R++ A L
Sbjct: 245  FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 302

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+
Sbjct: 303  GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFN 355

Query: 410  LSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    
Sbjct: 356  LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIG 415

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +
Sbjct: 416  RDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 475

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEK 587
            E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR   I    VS+  + +
Sbjct: 476  ENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIR 533

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVN 644
            +R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+ D +  G++EY+D  
Sbjct: 534  EREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTL 593

Query: 645  EENNALIALYEGDATPDT-------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAM 697
            EE   ++A+   D            TH EI P  ILGV A +IP+P HNQSPRNTYQ AM
Sbjct: 594  EEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM 653

Query: 698  GKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 757
            GKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY
Sbjct: 654  GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGY 713

Query: 758  DIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHS 817
            + ED+++MN+S++DR F R +  + Y     K      +   +P R     E  Q + H+
Sbjct: 714  NQEDSVIMNRSAVDRSFFRSVFYRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA 768

Query: 818  NLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGP 876
              +   LDDDGL APG  +  +DV I K   L E    + S    T+ RY     +    
Sbjct: 769  --IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLR 822

Query: 877  DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+
Sbjct: 823  TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 882

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS 
Sbjct: 883  CEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISN 938

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQ
Sbjct: 939  LLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQ 998

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            P EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CG++   N +  
Sbjct: 999  PMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTH 1058

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1059 TYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1096


>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1198

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1210 (36%), Positives = 662/1210 (54%), Gaps = 113/1210 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F   +GLV+Q +DSF+ FV   +++IV  N ++            +      
Sbjct: 6    DCWTVISSFFDEKGLVRQQIDSFDEFVQNTMQEIVEENQKLTLDQFNQYTQHKNDTTRRY 65

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTTM 134
             ++F  + + +P+MT  DG    + PH  RL ++TY+API ++++    VQ    E   +
Sbjct: 66   EIQFGQIYLSRPTMTEADGSVSPMFPHEARLRNLTYSAPIYIDMKKRVLVQVEDDETGDL 125

Query: 135  -----------EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTE 183
                       E   V IG++PIML+S  C L   D A L+ L ECP D GGYFII G+E
Sbjct: 126  IWVPEFDEEHDETTKVWIGKVPIMLKSTFCNLNNVDSARLSELNECPFDQGGYFIINGSE 185

Query: 184  KVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQMEKGK------ 230
            KVL+ QE+L+ N V I           +  I +++    +TV S  +    + +      
Sbjct: 186  KVLIAQERLAANHVYIFAKAEPSPVSYQAEIRSAMEKGGKTVSSMQIKMFRRPQGNAQAD 245

Query: 231  -MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIY 286
             M   +     +IPI++V +A+G+  D+E+++ +     D +   LL P IEE     + 
Sbjct: 246  TMRATIPYIKNEIPIIIVFRALGIVPDREILEHICFDFDDSQMLDLLKPCIEEA--FVVQ 303

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
             Q  AL+++ G+ + +T G   + R   A  IL+   L +V  +  +   K ++   M+ 
Sbjct: 304  DQNVALDFI-GR-RGTTTGLSKDKRIRYAKDILQKEMLPHVATNEGSETKKAYFFGYMIH 361

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
            R++ A L +  +DD+D+ G KRL+L G L++ LF  LF+ +  +V + +   +       
Sbjct: 362  RLMLARLERRELDDRDHFGKKRLDLGGPLLASLFRMLFRKLTKDVYRYMQKCVET---HK 418

Query: 407  RFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
             F+L+Q +  ++IT GL+ +L+TGN+ D K+F   R G++QVL R +F  TL H+ R + 
Sbjct: 419  EFNLNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRCNT 478

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM +V+T     P+      
Sbjct: 479  PIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVSTGSSSAPIQDFLQE 538

Query: 526  LGVEDLELLSGEELHNP--NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
             G+E+LE        NP  N   V  NG+ +G HR P      +RKLRR G I   VSV 
Sbjct: 539  WGMEELEEF------NPRSNQVKVFVNGVWIGVHRDPTNLVKTLRKLRREGDIQHEVSVV 592

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADK----------GISRIKEHHMKELLDGVRSFD--D 631
             + +++ + + +D GRVCRPL + D+           I++I+ H   E  D  + ++   
Sbjct: 593  RDVREKEIKVFTDAGRVCRPLFLVDEETQQLEINKSHIAKIEAHTNGEDEDPDQPYNWAK 652

Query: 632  FLREGLIEYLDVNEENNALI------------------------ALYEGDATPDT---TH 664
             + +G++E LD  EE   +I                        A  +  +T DT   TH
Sbjct: 653  LMSDGVMELLDAEEEETVMICMTPEELEHSRQGFIPQDEEFDPAARIKSASTLDTHTWTH 712

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L  +L YPQ
Sbjct: 713  CEIHPSMILGICASIIPFPDHNQSPRNTYQAAMGKQAMGVHLTNFQQRMDTLSNILYYPQ 772

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+S++DRG  R I  + Y 
Sbjct: 773  KPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSIFYRSYM 832

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               +K      +   +P R      RM+   +  +     ++DGL APG  +  +D+ I 
Sbjct: 833  DTEKKVGTMLLEEFEKPTRET--CLRMKHGTYDKI-----ENDGLIAPGTAVTGDDIIIG 885

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K +P+      +   GQ    +     +      E  +VD+V + ++ +G    K  +R 
Sbjct: 886  KTAPIPPDSEEL---GQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRS 942

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TR P++GDKF+SRHGQKG  G   + ED PF+  GI PDLI+NPH  PSRMT+G ++E L
Sbjct: 943  TRIPQIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGHLVECL 1002

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
              K     G     + F E      TVESIS  L + G+   G +++Y+G TG  LQA +
Sbjct: 1003 LSKVATLQGSEGDATPFTEV-----TVESISSILHEKGYQKRGLEVMYNGHTGRKLQAQV 1057

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            ++GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERDC+IA+G + 
Sbjct: 1058 YIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAA 1117

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
             + ERL  +SD + + VC +CG+    N K +   C  C+N  +IS + +PYA KLL QE
Sbjct: 1118 FLKERLFDASDAYRLHVCDLCGMTAIANLKKQTFECRACRNKTDISQIHVPYAAKLLFQE 1177

Query: 1145 LQSMNIVPRL 1154
            LQSM I PRL
Sbjct: 1178 LQSMGISPRL 1187


>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
 gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
          Length = 1190

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1180 (37%), Positives = 664/1180 (56%), Gaps = 95/1180 (8%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGIDPSIF-LRF 82
            + ++  +   +GLV+Q LDSF+ F+   ++K+V        +  D    G+  + F ++F
Sbjct: 49   WVVISAYFDEKGLVRQQLDSFDEFIQMSVQKLVEDSPPVEIQLEDHGAQGLSETKFSIKF 108

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
            + + + +P+    DG    L P+  RL ++TY+AP+ V+I + +  S+ E    +   V 
Sbjct: 109  EQIYLSKPTHWEKDGAPAPLMPNEARLRNLTYSAPLYVDITKTIAKSNEEPLIAKYEKVF 168

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L    E +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 169  IGKIPIMLRSTYCLLNRLSERDLTDLNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 228

Query: 201  TDK------KGNINASVTSSTETVKSKTVIQMEKG--------KMYLLLNQFV------- 239
            + K      K    + + SS+    +  V    +G        K  L+  + V       
Sbjct: 229  SLKDNKFAFKAECRSCLESSSRPTSTLWVNMYARGGGHGAANTKKQLMGQRIVVNLPYVK 288

Query: 240  KKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
            +++P++VV +A+G  SD+++++ +     D     ++ PS++E     I  Q  AL ++ 
Sbjct: 289  QELPVIVVFRALGFVSDRDILEHIVYDFDDAEMMEMVKPSLDEA--FVIQEQSVALNFIG 346

Query: 297  GKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
             +  +     P   RE R   A  IL+   L +V + +     K +++  M+ R++ A +
Sbjct: 347  SRGVQ-----PGITREKRVKYAREILQKETLPHVGISDFCETKKAYFLGYMVHRLLLAAM 401

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQF 413
             +  +DD+D+ GNKRL+L+G L       LFK ++ EV+      ++K   +  F+L   
Sbjct: 402  GRRELDDRDHYGNKRLDLAGPL------GLFKNLLKEVKMVAQRYINK---TGDFNLELC 452

Query: 414  IVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRK 472
            +    +T GL+ +L+TGN+ D K+    R G++QVL RL++  TL H+ R++    +  K
Sbjct: 453  VRTGILTKGLQYSLATGNWGDQKKAHQTRAGVSQVLNRLTYAATLSHLRRLNSPIGREGK 512

Query: 473  VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLE 532
            ++ PR L  + WGM+CP +TPEG+A GLVKNLALM +++   ++ P++       +E LE
Sbjct: 513  LAKPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYISVGSQQEPILEFLEEWSMETLE 572

Query: 533  LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIG-EFVSVFVNEKQRCV 591
             ++   +       V  NG  +G HR P+     +RKLRR   I    VS+  + + R +
Sbjct: 573  EVAPSAISATTKIFV--NGAWVGIHREPQQLMATLRKLRRQMDIVVSEVSMVRDIRDREI 630

Query: 592  YIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS----FDDFLREGLIEYLDVNEEN 647
             I +D GR+CRPL+I +     +K++H++ L     S    + + +   ++EY+D  EE 
Sbjct: 631  RIYTDAGRICRPLLIVEDQRLLLKKNHIENLKRRNESNGHGWSELVANSIVEYIDTMEEE 690

Query: 648  NALIALYEGDATP------DT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQ 700
              ++A+   D         DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQ
Sbjct: 691  TIMLAMTPDDLQDRGVGYCDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQ 750

Query: 701  AMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIE 760
            AMG    N   RMD+L ++L YPQ+PL+TTR++E + +++L AG N+ VA++SY+GY+ E
Sbjct: 751  AMGIYTTNFHVRMDTLAHVLWYPQKPLVTTRSMEYLRFNELPAGINSIVAILSYTGYNQE 810

Query: 761  DAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLL 820
            D+++MN SS+DRG  R I  + Y            + I +P R      R  V H     
Sbjct: 811  DSVIMNSSSIDRGMFRSIFYRSYRDQESSREARNEETIEKPTRQICQGMRNAVYHK---- 866

Query: 821  LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD--- 877
               LDDDG+ +PG  +  +DV I K   LE           TD    + R + K      
Sbjct: 867  ---LDDDGIVSPGTRVSGDDVIIGKTIMLE----------DTDDSSTTKRSSKKDASTFL 913

Query: 878  --GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF 935
               ET +VD+V L  + +G+  +K  +R  R P++GDKF+SRHGQKG  G I +QED PF
Sbjct: 914  RASETGIVDQVMLSVNADGNKFVKVRVRSIRIPQIGDKFASRHGQKGTIGMIYRQEDMPF 973

Query: 936  SERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESIS 995
            +  GI PD+I+NPH  PSRMT+G +IE L GK  VS  R   G A   P   +  V+ +S
Sbjct: 974  TCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANRGEIGDA--TPFNDSVNVQKVS 1029

Query: 996  ETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTR 1055
              L ++G+   G +++YSG TG  L   +F+GP YYQ+LKHMV DK+H+R  GP  M+ R
Sbjct: 1030 SLLQEYGYHLRGNEVMYSGFTGRKLNTQVFIGPTYYQRLKHMVDDKIHSRARGPLQMMAR 1089

Query: 1056 QPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKL 1115
            QP EGR+R+GGLR GEMERDC IA+GA+  + ERL   SDP+ V VC++CG++   N + 
Sbjct: 1090 QPMEGRSRDGGLRFGEMERDCQIAHGAAHFLKERLFEVSDPYTVYVCKICGIIAIANSRT 1149

Query: 1116 KAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
                C TC+N   IS + +PYACKLL QEL SM I PR+K
Sbjct: 1150 GHYECRTCRNKTKISRVNIPYACKLLFQELTSMCIAPRMK 1189


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1180 (37%), Positives = 653/1180 (55%), Gaps = 99/1180 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND----RIVSGIDPSIFLRFKD- 84
            D + ++  + + +GLV+Q LDSF+ F+   +++IV  +     R  S  +P     F + 
Sbjct: 69   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAET 128

Query: 85   --------VRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY--VQGSHTEKTT 133
                    + + +P MT  DG +  L P   RL ++TY+AP+ V++ Y  ++  H  +  
Sbjct: 129  LHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEV 188

Query: 134  MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
             E  D   V IG++PIMLRS  C LY + E +L  LGECP D GGYFII G+EKVL+ QE
Sbjct: 189  TETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 248

Query: 191  QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM--EKGKMYLLLNQFVKK- 241
            ++S N V +   ++ N  A      S+  +     S   ++M    G       Q+++  
Sbjct: 249  KMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRAT 308

Query: 242  -------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
                   IPI++V +A+G  +D+++++ +     D +   LL PS+EE     I  Q+ A
Sbjct: 309  LPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVA 366

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+Y+ GK + +T G     R   A  IL+   L +V V       K +Y   ++ R++  
Sbjct: 367  LDYI-GK-RGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC 424

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L + A DD+D+ GNKRL+L+G L+  LF      M  +  K V++              
Sbjct: 425  ALGRRAEDDRDHYGNKRLDLAGPLLGGLFR-----MCVDNGKEVNL-------------- 465

Query: 412  QFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
            QF ++  +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++    + 
Sbjct: 466  QFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGRE 525

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
             K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++      G E+
Sbjct: 526  GKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTEN 585

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
             E +S   +  P +  +  NG  +G HR P      +R+LRR   +   V V  + + + 
Sbjct: 586  FEEISPAVI--PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKE 643

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHHM-----KELLDGVRSFDDFLREGLIEYLDVNE 645
            + + +D GR  RPL I +     IK+ H+     +E  D    + + + +G IEY+D  E
Sbjct: 644  LRLYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRETPD--EGWHELVSKGYIEYIDTEE 701

Query: 646  ENNALIA-----LYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
            E   +I+     L+     P+       TH EI P  ILGV A +IP+P HNQSPRNTYQ
Sbjct: 702  EETTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQ 761

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  Y
Sbjct: 762  SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY 821

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVV 814
            SGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RP+R       M + 
Sbjct: 822  SGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENT----MGMR 877

Query: 815  HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK 874
            H S      LDDDGLA PG  +   DV I K SP+    +     GQ  SRY     +  
Sbjct: 878  HGS---YDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDA----QGQA-SRYSKRDHSTS 929

Query: 875  GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 934
                E+ +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P
Sbjct: 930  LRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP 989

Query: 935  FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 994
            ++  GI PD+I+NPH  PSRMT+G++IE + GK     GR    + F +      TV++I
Sbjct: 990  WTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGREGDATPFTDV-----TVDNI 1044

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
            S+ L +  +   G + +Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +LT
Sbjct: 1045 SKALHRCNYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILT 1104

Query: 1055 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHK 1114
            RQP EGR+R+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N K
Sbjct: 1105 RQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLK 1164

Query: 1115 LKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              +  C  CKN  +I  + +PYACKLL QEL +M I PR+
Sbjct: 1165 KNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1204


>gi|327311708|ref|YP_004338605.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
            768-20]
 gi|326948187|gb|AEA13293.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
            768-20]
          Length = 1127

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1142 (37%), Positives = 648/1142 (56%), Gaps = 53/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ L+  F++ RG+V   + +FN F++  + KI+     + + I   + +  + V IG 
Sbjct: 23   DRWALVKAFIRDRGIVDHQIRAFNDFIDRKLPKIIEEMGVVETEIK-GLKVAIERVEIGW 81

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P +   DG    + P   RL + TY+AP+ + +      + +        +  G +PIM+
Sbjct: 82   PRIKEPDGSETVIYPMEARLRNATYSAPMYLTVTL----YVDDEPYATETIYAGELPIMV 137

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
            +S +C L      E  +  E P DPGGYFII G+E+V++ QE L  +R I D   K  I 
Sbjct: 138  KSKKCNLTRLKPEEYPKRFEDPEDPGGYFIINGSERVVISQEDLVTDRPIYDVGDKPTIR 197

Query: 209  --ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A V S+    ++   ++  K G +Y+ L+    +IP  V M+AMG+ESDQ++V  V  
Sbjct: 198  YLAKVISTGPGYRATMTVEYHKDGVIYVTLSAIPVRIPFTVYMRAMGLESDQDIVLAVSD 257

Query: 266  DPRYSALLLPSIEECANLDIY-TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
            DP     LLPS+   A  +I  T++ AL+++ GK+     G P   R  RA  IL   FL
Sbjct: 258  DPDIQKELLPSL--LAGQEIAATRDDALDFVGGKI---AVGQPRPIRIERALQILDKYFL 312

Query: 325  ANVPVHNNNFRP-------KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             N+     + +        K   +  +++ ++E  L +   DDKD+V NKR+ L   L++
Sbjct: 313  PNLNPQKPDEKAMEEARIKKALLLGQVVKGLIEMQLGRRKPDDKDHVANKRVRLVNDLLA 372

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKR 436
             LF  + K  + E++      L K     +    Q IVR D IT  +++ L+TGN+    
Sbjct: 373  QLFRTVMKQFLQELKNQ----LEKYYARGKIPHLQTIVRPDIITERVKQALATGNW---- 424

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                + G++Q+L R +++ TL ++ RV     +++     R L P+QWG LC  +TPEG+
Sbjct: 425  -VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVETPEGQ 483

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
              GLVKNLAL+  +T   +E  +      LGV  +       L     +L   NG ++G 
Sbjct: 484  NVGLVKNLALLAEITIGVDEAVVEKTLNELGVVPVLEARRGGLEGAEVYL---NGRLIGI 540

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
            H+ P+     +RK+RR GKI + V+V        VY+  DGGR+ RPL++ + G  ++ +
Sbjct: 541  HQNPEELVKTLRKMRRQGKISDEVNV--AHLGDAVYVNCDGGRIRRPLLVIEDGKLKLTK 598

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
             H+++L  G  +++D ++ G++EYLD +EE NA IA+         TH+EI P +ILG I
Sbjct: 599  EHVQKLASGELTWNDLVKMGVVEYLDADEEENAYIAVGPEPDMSKYTHMEIVPSSILGAI 658

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IPY  HNQSPRN Y+ AM KQ++G    N + ++DS  ++L YP+RP++TTR +EL+
Sbjct: 659  ASIIPYLEHNQSPRNQYEAAMAKQSLGLPQANFMYKLDSRGHMLYYPERPIVTTRGLELI 718

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
            GY +  AGQNA VA+++Y+GY+IEDA++MNKSS+DRG  R    + Y    QKY     D
Sbjct: 719  GYSRKPAGQNAVVALLTYTGYNIEDAVIMNKSSVDRGLFRSNFYRTYETEEQKYPGGEED 778

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            RI  PD +  G    +   H       LD+DG+A P   +   +V I K +P   R  + 
Sbjct: 779  RIEVPDSSARGYRGPEAYSH-------LDEDGIAPPEVYVTGGEVIIGKTAP--PRFYMT 829

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              T +     R A    +   GE  +VDRV +     G+  +K  +R  R PELGDKF+S
Sbjct: 830  LETEKILKERRDASIPVR--RGERGIVDRVVITESPEGNKLVKVRLRELRVPELGDKFAS 887

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGV G +++QED PF+E GI PD+I+NPH  PSRMTVG+++E + GKAG   G+  
Sbjct: 888  RHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAMPSRMTVGQLLESIAGKAGALTGQLI 947

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F        T   + E L+K GF ++GK+++YSGITG  L A IF+G +YYQKL H
Sbjct: 948  DATPF-----EGVTEGELRELLMKLGFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHH 1002

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GAS L++ER++ SSD 
Sbjct: 1003 MVADKIHARSRGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERMVESSDK 1062

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            + + VC +CGL  Y + K     C         + + +PYA KLL+QEL ++ I P+L+L
Sbjct: 1063 YTMYVCELCGLPAYLDAKTNRPKCPIHGESGQFAKVVVPYAFKLLLQELIALGIYPKLEL 1122

Query: 1157 AE 1158
            AE
Sbjct: 1123 AE 1124


>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
 gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
          Length = 1141

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1136 (36%), Positives = 644/1136 (56%), Gaps = 44/1136 (3%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ L+  F+   GLV+  +DSFN FV   ++++V  N  I + +   ++++ + + +G+
Sbjct: 36   DRWALVDAFISEGGLVRHQIDSFNDFVEKKLQEVVNENSLIETEVK-GLYIKLERIEVGK 94

Query: 90   PSMTVDGVSEK-LNPHMCRLSDMTYAAPI-LVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P +     SE  L P   RL ++TYAAP+ L  + YV         +++  V IG +PIM
Sbjct: 95   PRVREADASEHILYPMEARLRNLTYAAPLYLTMVLYVNDEE-----VDRQKVYIGDLPIM 149

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            ++S  C LYG    EL    E P DPGGYFII G+E+V++ QE L+ N+   D   K +I
Sbjct: 150  IKSKFCNLYGLKRQELISKLEDPDDPGGYFIINGSERVIVSQEDLAPNKPFFDKGDKASI 209

Query: 208  NASVTSSTETVKSKTVIQMEK---GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
                   +     KT + +E+   G +Y+       +IP  ++M+A+G+E+D+++V  V 
Sbjct: 210  TNVAKVISIGAGYKTTVTVERHRDGIIYVTFPAIATRIPFPIIMRALGLETDEDIVLAVS 269

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP     LLPS++    +   T + AL+++  KV     G P   R  RA  +L   FL
Sbjct: 270  DDPDIQNELLPSLQFSVQI-ASTIDDALDFIGSKV---AIGQPREVRIERAKQVLDRYFL 325

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++         K   V  M++ ++E  L +   DDKD++ NKR+ L G L++ LF  +F
Sbjct: 326  PHLGATEEARVKKALLVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLLAQLFRAVF 385

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGM 444
            K ++ ++++ ++      SR     L   +  D IT  +   L+TGN+        R G+
Sbjct: 386  KQVLQDIRQQLE---RHYSRGKIPSLVTLVRADIITERIRHALATGNW-----IGGRTGV 437

Query: 445  TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
            +Q+L R + + TL H+ R+     +++     R L P+QWG LC  +TPEG+ CGLVKNL
Sbjct: 438  SQMLDRTNVLSTLSHLRRIVSNLSRTQPHFEARDLHPTQWGRLCAIETPEGQNCGLVKNL 497

Query: 505  ALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFA 564
            AL++ +T    E  +  + Y LGV  +     E +     +L   NG ++G H  P+   
Sbjct: 498  ALLSTITVGVNENEVEKMLYDLGVVPILKARKEGVKGTEVYL---NGRLIGIHTEPEKLV 554

Query: 565  DVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKEL 622
              +R++RR G+I   +++    NE    + +  DGGR+ RPL+I + G  R+K  H++ L
Sbjct: 555  GTVREMRRRGQISHEINIARIQNEYLDELRVNCDGGRLRRPLLIIEDGKPRLKPEHIERL 614

Query: 623  LDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPY 682
              G  S+ D +  G+IEYLD +EE NAL+A+   +     TH+EI P  ++G +A +IPY
Sbjct: 615  RKGEWSWSDLISNGIIEYLDGDEEENALVAINPEEDMSKYTHMEIIPSVMIGAVASVIPY 674

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
              HNQSPRN Y+ AM KQ++G  A N   RMDS  +LL+YP+RPL+ TR +EL GY    
Sbjct: 675  AEHNQSPRNIYEAAMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITRGMELNGYLGRP 734

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+++Y+GY++EDA+++N+SS++RG  R +  + Y     +Y     DRI  P 
Sbjct: 735  AGQNAVVALLTYTGYNMEDAVILNRSSIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPS 794

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
                G +  +   H       LD+DG+ +P   +   +V I K SP    G + +    +
Sbjct: 795  AEVRGYKGPEAYAH-------LDEDGIVSPEVFVSGGEVLIGKTSPPRFYG-VYTEAVVS 846

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
             +R  S+    +G  G   +VD V +     G   +K  +R  R PELGDKF+SRHGQKG
Sbjct: 847  SARRDSSITVRRGEKG---IVDSVVITETNEGYKLVKVKVRELRIPELGDKFASRHGQKG 903

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
            V G ++  +D PF+E GI PD+I+NPH  PSRMTVG+++E + GK     G     + F 
Sbjct: 904  VMGMMIPMQDMPFTEDGITPDIIVNPHALPSRMTVGQLLESMAGKVAALRGLTIDATPF- 962

Query: 983  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1042
                   T E + + L++ GF ++GK+++YSG+TG  L+A IF+G +YYQKL HMV DK+
Sbjct: 963  ----EGVTEEELRDLLIRSGFRWDGKEVMYSGLTGRKLEADIFIGVVYYQKLHHMVADKI 1018

Query: 1043 HARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC 1102
            HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GA+ L+ ERL+ SSD + + VC
Sbjct: 1019 HARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGAAALLKERLVESSDKYVMYVC 1078

Query: 1103 RVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              CG++ +Y+      +C    +   I  + +PYA KLL+ EL S+ I PR++  +
Sbjct: 1079 EDCGMIAWYDANKGKPVCPIHGDKGRIVRIVVPYAFKLLLHELMSLGIYPRIEAGD 1134


>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
            edodes]
          Length = 1228

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1210 (36%), Positives = 668/1210 (55%), Gaps = 112/1210 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  ++       SG +  +  R+
Sbjct: 36   DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQQDQHSGREGDMTRRY 95

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAP--------ILVNIEYVQGSH 128
             ++R GQ     P++T  DG    + P   RL ++TY+AP        ++V  E   G  
Sbjct: 96   -EIRFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMKKKVMVGREDPDGVP 154

Query: 129  TEKTTMEKND--------VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
             +     +ND        V IG++PIMLRS  C+L G  + +L  L ECP D GGYFII 
Sbjct: 155  GDMAWETENDDGPENSTKVWIGKVPIMLRSTFCILRGLADQDLYDLNECPYDSGGYFIIN 214

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYL 233
            G+EKVL+ QE+++ N V +    +         I ++V    +T+    V    +G+   
Sbjct: 215  GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRGQERA 274

Query: 234  LLN------QFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANL 283
            + N       ++K  IPI VV + +G+ SD+++++ +    +D +   +L P I+E    
Sbjct: 275  MGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDE--GF 332

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++  +   +T G     R   A  IL+   L +V +   +   K F+   
Sbjct: 333  VIQDREVALDFIGNR--GTTTGLSREKRIRYAQEILQKEMLPHVSMAEGSESKKAFFFGY 390

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +    
Sbjct: 391  MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVET-- 448

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
                F+L+  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 449  -HKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRR 507

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I  
Sbjct: 508  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEF 567

Query: 523  CYCLGVEDLELLSGEELHN--PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                G+E LE    E  H+  P    V  NG+ +G HR P      +RKLRR   I   V
Sbjct: 568  LEEWGLESLE----ENAHSSTPTMTKVFVNGVWMGVHREPANLVKTIRKLRRKDDISPEV 623

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLR 634
            SV  + ++R + + +D GRVCRPL I +     +++ H+K LL+G         ++  ++
Sbjct: 624  SVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLLNGQNDEGSEFKWEHLVK 683

Query: 635  EGLIEYLDVNEENNALIAL-----------------YEGDATPD-------------TTH 664
             G++E LD  EE   +I++                 +E D   D              TH
Sbjct: 684  NGIVELLDAEEEETVMISMTPEDLENSRLQQQGIDPHENDGEFDPAARLKAGISAHTWTH 743

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ
Sbjct: 744  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQ 803

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y 
Sbjct: 804  KPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYM 863

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
             + +K      +   +P R      RM+   +  L     +DDGL APG  ++  D+ I 
Sbjct: 864  DLEKKSGVQQLEEFEKPTRDN--TLRMKHGTYDKL-----EDDGLIAPGTGVRGEDIIIG 916

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K +P+      +    +T +R R      K    E+ +VD+V + ++  G   +K  +R 
Sbjct: 917  KTAPIPPDSEELGQRTRTHTR-RDVSTPLKST--ESGIVDQVLITTNSEGQKFVKIRVRS 973

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+++NPH  PSRMT+G ++E L
Sbjct: 974  TRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECL 1033

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
              K     G     + F +      TVES+S  L + G+   G ++++ G TG  LQA +
Sbjct: 1034 LSKVATLIGNEGDATPFTDL-----TVESVSMFLKQKGYQSRGLEVMFHGHTGRKLQAQV 1088

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            ++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G + 
Sbjct: 1089 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAG 1148

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
             + ERL  +SD + V VC +CGL    N K ++  C  CKN   +S + +PYA KLL QE
Sbjct: 1149 FLKERLFEASDAYRVHVCEICGLTAIANLKKQSFECRACKNKTAVSQLYIPYAAKLLFQE 1208

Query: 1145 LQSMNIVPRL 1154
            LQSMNI  RL
Sbjct: 1209 LQSMNIAARL 1218


>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
          Length = 1173

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1170 (37%), Positives = 653/1170 (55%), Gaps = 81/1170 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRAN---------DRIVSGID--PSIFLRFKDVR 86
            +   +GLV+Q LDS++ F+   ++++V  +           +   I+  P   L+F+ + 
Sbjct: 34   YFDEKGLVRQQLDSYDEFIQMSVQRVVEDSPVIEIVAEAQHLAGEIENPPRYLLKFEQIY 93

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-DVVIGRI 144
            + +P+    DG    L P+  RL ++TY+AP+ V+I        E    + +    IG+I
Sbjct: 94   LSKPTHWEKDGAPSPLVPNEARLRNLTYSAPLYVDISKTIIRDGEDPIYKPHTKTFIGKI 153

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECP DPG YFII G+EKVL+ QE+++ N V +   K 
Sbjct: 154  PIMLRSTYCLLNGMTDRDLTELNECPFDPGAYFIINGSEKVLIAQEKMATNTVYVFAMKD 213

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  V  + +G           ++  +L    ++IPIMVV
Sbjct: 214  GKFAYKTEIRSCLEHSSRPTSTLWVNMLARGGQVGKRNSVGQRIIAILPYIKQEIPIMVV 273

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 274  FRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNIALNFIGARGARP-- 329

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 330  GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 389

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L G L+S LF  +FK +I EV    QK VD       R   F++   +    I+
Sbjct: 390  GNKRLDLGGPLLSFLFRGMFKNLIKEVRLYAQKFVD-------RGKDFNIELAVKTRIIS 442

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 443  DGLRYSLATGNWADQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 502

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 503  HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSSI 562

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D G
Sbjct: 563  ADSTKIFV--NGCWVGIHRDPELLMSTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAG 620

Query: 599  RVCRPLVIAD-KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            R+CRPL+I D +G   +K+  +  L D    +   +  G++EY+D  EE   +IA+   D
Sbjct: 621  RICRPLLIVDSEGRLLMKKKDIDLLKDRDYGWQSLVSSGVVEYIDTLEEETIMIAMTPND 680

Query: 658  A--------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
                       + TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 681  LRQNRDDTYCANFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 740

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED+I++N S+
Sbjct: 741  HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSIIINASA 800

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            ++RGF R +  + Y     +      ++  +P+R      R  +          LD+DG+
Sbjct: 801  VERGFFRSVFYRSYRDAEVRRLGDQDEQFEKPNRLTCQGMRHAIYDK-------LDEDGI 853

Query: 830  AAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSA--RQTYKGPDGETCVVDRV 886
             APG  +  +DV I K   L E    + S T +   R  S   R++      ET VVD+V
Sbjct: 854  IAPGVRVSGDDVVIGKTITLMENEDELESVTKKYTKRDASTFLRRS------ETGVVDQV 907

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I+
Sbjct: 908  MLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTSEGITPDIII 967

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G++  
Sbjct: 968  NPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISHLLQEYGYNLR 1023

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GG
Sbjct: 1024 GNEIMYNGYTGRKINAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPLEGRARDGG 1083

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126
            LR GEMERDC I++GA+  + ERL   SDP+ + VC +CGL+   N +     C +CKN 
Sbjct: 1084 LRFGEMERDCQISHGAAQFLRERLFTVSDPYRIHVCNLCGLIVIANLRNNTFECKSCKNK 1143

Query: 1127 DNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
              IS + LPYA KLL+QEL +M I PR+ +
Sbjct: 1144 TQISQVHLPYASKLLMQELMAMLISPRIAV 1173


>gi|171186405|ref|YP_001795324.1| DNA-directed RNA polymerase subunit B [Pyrobaculum neutrophilum
            V24Sta]
 gi|170935617|gb|ACB40878.1| RNA polymerase Rpb2 domain 6 [Pyrobaculum neutrophilum V24Sta]
          Length = 1127

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1142 (38%), Positives = 652/1142 (57%), Gaps = 53/1142 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ L+  F+K +GL    + SFN F++  + KIV  + ++V      + L  + + +G 
Sbjct: 23   DRWVLVERFIKDKGLANHQIKSFNDFLDKKLPKIVE-DFKVVETEIKGLKLVLERIEVGW 81

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPI-LVNIEYVQGSHTEKTTMEKNDVVIGRIPIM 147
            P +   DG    + P   RL + TY+AP+ L    YV        T       IG +PIM
Sbjct: 82   PKIKESDGSESIIYPMEARLRNATYSAPLYLTATLYVDDEPYVTETF-----YIGELPIM 136

Query: 148  LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI 207
            ++S RC L      E  +  E P D GGYFII G+E+V++ QE L  +R I D   K ++
Sbjct: 137  VKSKRCNLTRLRPGEYIKKFEDPQDFGGYFIINGSERVIISQEDLVADRPIYDRGDKPSV 196

Query: 208  N--ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A   S+    +S   +++ + G +Y+ L+    KIP  + MKA+G+E+D++VV+ V 
Sbjct: 197  KYIAKTISTGIGYRSTLTVELNRDGVIYVTLSAMPVKIPFPIYMKALGLETDEDVVKAVS 256

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP     LLPS+   AN    T+E AL+++ GKV     G P   R  +A+ +L   FL
Sbjct: 257  DDPEIQKELLPSLI-AANQIAITREDALDFIGGKV---AVGQPKPIRVEKAYQLLDKYFL 312

Query: 325  ANVPVHNNNFR-------PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
             ++     + +        K   +  +++ +VE  L +   DDKD+V NKR+ L G L++
Sbjct: 313  PHLGTTTPDEKRQQEIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMT 372

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKR 436
             LF  + K  + E++      L K     R    Q IVR D IT  + + L+TGN+    
Sbjct: 373  QLFRTVLKQFLQELKSQ----LEKYYARGRIPHIQTIVRPDIITERVRQALATGNW---- 424

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                + G++Q+L R +++ TL ++ RV     +++     R L P+QWG LC  +TPEG+
Sbjct: 425  -VGGKTGVSQILDRTNYMSTLSYLRRVVSSLSRTQPHFEARDLHPTQWGRLCAVETPEGQ 483

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
              GLVKNLAL+  +TT  +EG +  L Y LGV  + LL   E        V  NG ++G 
Sbjct: 484  NVGLVKNLALLAEITTGVDEGEVEQLLYNLGV--VPLLKARE-EGIRGAEVYINGRLIGV 540

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616
            H  P+  A  +R +RR GKI + +++   +    VY+  DGGR+ RPL++ + G  ++ +
Sbjct: 541  HPNPEELAKTVRGMRRQGKISDEINIAYLDG--SVYVNCDGGRIRRPLLVVEGGRLKLTK 598

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
              ++++  G  ++DD ++ G+IEYLD +EE NA IA+       + TH+EI P +ILG +
Sbjct: 599  EIVEKVRRGDLTWDDLVKMGVIEYLDADEEENAHIAVDPDVDLSNYTHVEIVPSSILGAV 658

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
              +IPY  HNQSPRN Y+ AM KQ++G    N L ++DS  ++L YP+RP++TTR +ELV
Sbjct: 659  GSIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELV 718

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
            GY +  AGQNA VA+++Y+GY+IEDA+++NK+S++RG  R +  + Y    QKY     D
Sbjct: 719  GYSRRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEED 778

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            +I  PD +  G    +   H       LD+DG+A P   +  N+V + K SP     ++ 
Sbjct: 779  KIEIPDSSVKGYRGPEAYSH-------LDEDGIAPPEVYVSSNEVLVGKTSPPRFYTTLE 831

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
            +     + R  S         GE  +VDRV +     G+  +K  +R  R PELGDKF+S
Sbjct: 832  AERILKERRDASVAVR----RGEKGIVDRVIITESPEGNKLVKVRLRELRVPELGDKFAS 887

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGV G +++ ED PF+E GI PD+I+NPH  PSRMTV +++E + GK G S G   
Sbjct: 888  RHGQKGVVGMLLRHEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESMAGKVGASLGALV 947

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              +AF          E + + L+K G+ ++GK+++YSGITG  L A IF+G +YYQKL H
Sbjct: 948  DATAF-----EGVKEEDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGVVYYQKLHH 1002

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GAS L++ERL+ SSD 
Sbjct: 1003 MVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDK 1062

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            + + VC +CGL  Y + K     C    +    + + +PYA KLL+QEL ++ I P+L+L
Sbjct: 1063 YTMYVCELCGLPAYLDAKSNKPKCPIHGDTGQFAKVVVPYAYKLLLQELIALGIYPKLEL 1122

Query: 1157 AE 1158
             E
Sbjct: 1123 TE 1124


>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
            delicata TFB-10046 SS5]
          Length = 1217

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1207 (35%), Positives = 665/1207 (55%), Gaps = 109/1207 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  ++       +G +    LR 
Sbjct: 28   DCWTIISSFFEEKGLVRQQLDSFDEFVQNTMQELVDENAELILHQGDQHTGQEGDANLRH 87

Query: 82   ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------- 123
               F  + + +P++T  DG    + P   RL ++TY+AP+ V +                
Sbjct: 88   EIKFGQIYLSRPTITEADGSVTPVFPQEARLRNLTYSAPLYVEMRRSRLTGRESMTKPGD 147

Query: 124  --VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
               Q    E TTM+K  + IG++PIMLRS  C+L    + +L  L ECP D GGYFII G
Sbjct: 148  YDWQRDPNESTTMQK--IWIGKVPIMLRSSFCILKTLSDRDLYDLNECPYDQGGYFIING 205

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+ S  V    + +    
Sbjct: 206  SEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRSAVEKGGKTISSFQVKMFHRNQEKTS 265

Query: 235  LNQ------FVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDI 285
             N       ++K+ IPI +V +A+G+ SD+++++ +  D  +   +L  ++ C +    I
Sbjct: 266  GNTIKATIPYIKQDIPIWIVFRALGVMSDRDILEHICYD-MHDVTMLEMLKPCIDEGFVI 324

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E+AL ++   V+ +T G     R   A  IL+   L ++ +   +   K +++  M+
Sbjct: 325  QEREQALSFI--GVRGTTTGLNKERRLRYAQEILQKEMLPHISMAEGSESKKAYFLGYMI 382

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +      
Sbjct: 383  HRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVEA---R 439

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
              F+LS  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R +F  TL H+ R +
Sbjct: 440  KEFNLSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRTN 499

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P+I    
Sbjct: 500  TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLE 559

Query: 525  CLGVEDLELLSGEELHNP-NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
              G+E LE    E  H+   S  V  NG+ +G HR P      ++KLRR   I   VSV 
Sbjct: 560  EWGLESLE----ENAHSGVPSTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 615

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD------GVRSFDDFLREGL 637
             + +++ + + +D GRVCRPL I +     IK+HH++ + +          +D+ ++ G+
Sbjct: 616  RDIREKELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKEDESGAPYKWDNLIKTGV 675

Query: 638  IEYLDVNEENNALIALYEGD-----------ATPDT-------------------THIEI 667
            IE LD  EE   +I +   D           A  D                    TH EI
Sbjct: 676  IELLDAEEEETVMICMTSDDLENSRLMSRGLAPRDADNEFDPAARLKSVVNAHTWTHCEI 735

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   R D++  +L YPQ+PL
Sbjct: 736  HPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPL 795

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + 
Sbjct: 796  ATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDVE 855

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +K      +   +P R      RM+   +       L+DDGL APG  +   D+ I K +
Sbjct: 856  KKSGMVALEEFEKPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTGVAGEDIIIGKTA 908

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            PL      +   GQ    ++    +      E  +VD+V + ++++G   +K  IR TR 
Sbjct: 909  PLPQDSEEL---GQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRV 965

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+G ++E L  K
Sbjct: 966  PQIGDKFASRHGQKGTIGITYRQEDMPFTAEGVTPDIIINPHAIPSRMTIGHLVECLLSK 1025

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G     + F +      TVES+S+ L + G+   G +++Y G TG  LQA +++G
Sbjct: 1026 VATMIGNEGDATPFTDL-----TVESVSQVLRQRGYHSRGLEVMYHGHTGRKLQAQVYLG 1080

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + 
Sbjct: 1081 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGLAAFLK 1140

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERL  +SD + + VC +CGL    N K ++  C  CKN   +S + +PYA KLLIQELQS
Sbjct: 1141 ERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKVAVSQLYIPYAAKLLIQELQS 1200

Query: 1148 MNIVPRL 1154
            MNI  RL
Sbjct: 1201 MNIAARL 1207


>gi|159119582|ref|XP_001710009.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia ATCC 50803]
 gi|157438127|gb|EDO82335.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
          Length = 1238

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/840 (45%), Positives = 535/840 (63%), Gaps = 28/840 (3%)

Query: 333  NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQ 392
            N+ PK  Y+A M+RR +         D KD+VGNK++E +G L+ L+F+D FKT+++ + 
Sbjct: 413  NWLPKAVYLATMIRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMV 472

Query: 393  KTVDIIL----SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL 448
            + VD +L    ++ +  + +D+   +    IT      +STGN+ +++  + R G++Q+L
Sbjct: 473  RKVDSVLRSDRNRGTDLTNYDIVSLVDPSIITRAFNSAISTGNWKIEKIGVDRVGVSQIL 532

Query: 449  ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMT 508
            +RLS+I  LG +TR+S  F+K+ K SGPR L  SQ G+ CP DTPEGE+ G+VKNL++M 
Sbjct: 533  SRLSYISALGQVTRLSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMA 592

Query: 509  HVTTDEEEGPLISLCYCLGVEDL-ELLSGEELHNPNSFLVIFNGLILGKHRRP--KCFAD 565
             ++ DE    +  L   +GVEDL    SG+       ++V  NG I G   +   K F  
Sbjct: 593  RISKDESTDSISKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFII 652

Query: 566  VMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
             +R  RR G I    S   N++ + VYI  D GR CRPL+I + G   +    ++ L+D 
Sbjct: 653  TLRTFRRRGYISYLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLMLTRSDIELLVDN 712

Query: 626  VRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHH 685
             + F D + EG +EYLDVNE  NA IA+   D TP  TH EIE +T+LG + GLIPYPHH
Sbjct: 713  QKCFVDLIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLLGYVVGLIPYPHH 772

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRN YQC+MGKQA G IAFNQL R ++ ++LL YPQ+PL +T+ ++L GY++L AGQ
Sbjct: 773  NQSPRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQQPLTSTKILKLTGYERLPAGQ 832

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT----AINQKYANSTSDRILRP 801
            NATV VMSYS +DIEDA+++N++++DRGFGRC + +  +    +I  K  +   D +L  
Sbjct: 833  NATVCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSVSTELNSIGSKSVDGIKDILL-- 890

Query: 802  DRTGPGAERMQVV--HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
               GP  + ++    +H+      ++DDGL A G  +K  D+ INK   +     +   T
Sbjct: 891  ---GPPKDHLKQYEGYHA------IEDDGLCAVGAHLKTGDIVINKGRHITNIPGLSDGT 941

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
              T S  + A ++ K P      VD+V + ++ +G++ IK L R  RRPE+GDKFSSRHG
Sbjct: 942  EATASLIK-APESLKSPLETITYVDKVLVTTNGDGNMLIKVLTREPRRPEVGDKFSSRHG 1000

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKGVCG IV Q D PF+ +GI PDLIMNPHG+PSRMTV K++ELL  K+G   G    G+
Sbjct: 1001 QKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSGCFRGEQTDGT 1060

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F   +      E + ++L   GFSY+GKD++YSG+TG  +  YIF GPIYYQKLKHMV 
Sbjct: 1061 CFRTKTDETFLAE-LYDSLRVAGFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVK 1119

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+H+RG+GP  MLTRQPTEGR  +GGLR+GEMERDC I+YGAS L+ ER M+SSD F  
Sbjct: 1120 DKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDDFLA 1179

Query: 1100 QVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
             VC  CGL  Y   K     C TC++G ++  +++PYA KL+IQEL SM ++ R++L ++
Sbjct: 1180 YVCETCGLFSY--EKNGVLWCPTCQSGKDVVKIRIPYAAKLMIQELISMGVLVRMQLEDS 1237



 Score =  205 bits (521), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 172/291 (59%), Gaps = 11/291 (3%)

Query: 23  APVKSV-VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR 81
           +PV SV +D+++L+  +L    + K HLDSFN+ ++  I  I++ N  +V    P   LR
Sbjct: 12  SPVHSVAMDRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENSLLVVAKHPQFHLR 71

Query: 82  FKDVRIGQ-------PSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
            + V + Q        S +  G    L PH CR  +MTYAAPI +++   + S+      
Sbjct: 72  IEKVDVKQVSQGSSKLSSSSAGSGVGLTPHECRQRNMTYAAPITIDVR-CKASNKSSVQY 130

Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            K ++ IG IPIMLRS RC+L  K   + A L ECP DPGGYFI++G EK +L+ EQ++ 
Sbjct: 131 YK-EICIGYIPIMLRSNRCILTNKSRKQQAFLQECPDDPGGYFIVRGAEKSILLAEQMTM 189

Query: 195 NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGM 253
           NR+++  +  GN+  +V S+T   KS+  +  +  K YL+ N+F KK IPI+ V KAMG 
Sbjct: 190 NRIVLGRNADGNVEVTVASNTTERKSRCAVLYKNKKFYLIHNKFNKKPIPIVTVFKAMGF 249

Query: 254 ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
            +D  V+ ++G D  +   +  S++EC+N  IYTQE+AL+YL  ++   T+
Sbjct: 250 VNDVTVLSLIGTDQLFLDYMSLSVQECSNDKIYTQEQALKYLADRIVVRTY 300


>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Nasonia vitripennis]
          Length = 1174

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1167 (37%), Positives = 653/1167 (55%), Gaps = 77/1167 (6%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGI--DPSIFL-RFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         +G   +P+  L +F+ + 
Sbjct: 32   YFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIELQAEAQHTTGEIENPTKHLVKFEQIY 91

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + ++    E    +     IG+I
Sbjct: 92   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKDGEEPIETQHQKTFIGKI 151

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 152  PIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 211

Query: 205  GN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
            G       I + +  S+    +  +  M K            ++  +L    ++IPIM+V
Sbjct: 212  GKYAFKCEIRSCLEHSSRPTSTLWINMMAKSGANIKKSAIGQRIVAVLPYIRQEIPIMIV 271

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 272  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 327

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G   + R   A  IL+   L +V + +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 328  GVTKDKRIKYAKEILQKETLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 387

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 388  GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKIIT 440

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+  + R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 441  DGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 500

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 501  HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 560

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P      +RKLRR   I    VS+  + + R + I +D G
Sbjct: 561  ADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 618

Query: 599  RVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+ RPL+I +     +K+ H+  L D       + + +  G++EY+D  EE   +IA+  
Sbjct: 619  RISRPLLIVENQTLLLKKRHIDMLKDRDYNNDGWQELVASGVVEYIDTLEEETVMIAMSP 678

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ  M  + MG    
Sbjct: 679  DDLKQEKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQVNMFPKVMGVYIT 738

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N 
Sbjct: 739  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 798

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N L   LDDD
Sbjct: 799  SAVERGFFRSVFYRSYKDSETKKFGDQEEQFEKPSRQTCQGMR-------NALYDKLDDD 851

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 852  GIIAPGIRVSGDDVVIGKTMTLPENDDELDSTTKRFTK-RDASTFLR--NSETGIVDQVM 908

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  G+ PD+I+N
Sbjct: 909  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIIN 968

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 969  PHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLCEYGYQLRG 1024

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1025 NEIMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1084

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +     C  CKN  
Sbjct: 1085 RFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKT 1144

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
             IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1145 QISQVRLPYAAKLLFQELMAMNIAPRL 1171


>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.14.25]
 gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.27]
 gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.4]
 gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
 gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
 gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
 gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
 gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
          Length = 1131

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1150 (36%), Positives = 650/1150 (56%), Gaps = 56/1150 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S+ +K++++  + K +GLV+QHLDS+N FV   +++I+     I + I P + +R   +R
Sbjct: 9    SIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI-PGLKVRLGKIR 67

Query: 87   IGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            IG+P +      E+ ++P   RL ++TYAAP+ + +  V+ +       E  +V IG +P
Sbjct: 68   IGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLP 123

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S    +      +L  +GE P DPGGYFI+ G+E+V++ QE L+ NRV++DT K G
Sbjct: 124  IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 183

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +    I+ ++ G  ++       KIP +++M+A+G+ +D+++V 
Sbjct: 184  SNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVY 243

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     L PS+E+ ++  I   + AL+++  +V     G    +R  +A  I+  
Sbjct: 244  AVSLDPEIQNELFPSLEQASS--IANVDDALDFIGSRV---AIGQKRENRIEKAQQIIDK 298

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++    ++ R K +Y+A  + +++E  L +   DDKD+  NKRL L+G L + LF 
Sbjct: 299  YFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFR 358

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  +  L   +  D +T  +   L+TGN+        R
Sbjct: 359  VAFKAFVKDLTYQLE---KSKVRGRKLALKALVRPDIVTERIRHALATGNW-----VGGR 410

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 411  TGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 470

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL---SGEELHNPNSFL----VIFNGLIL 554
            KNLALM  +     E  +    Y +GV  +E +     E   + N +L    VI NG ++
Sbjct: 471  KNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLV 530

Query: 555  GKHRRPKCFADVMRKLRRAGKI------GEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
            G +R  +  A  +R+ RR G+I      G  V+ F+NE    V++  D GRV RPL+I  
Sbjct: 531  GYYRDGEELAKKIRERRRNGEISDEVNVGHIVTDFINE----VHVNCDSGRVRRPLIIVS 586

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +    +++L  G  +FDD +R+G IEYLD  EE NA +AL   D TP+ TH+EI 
Sbjct: 587  NGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIW 646

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
               ILG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQRPL+
Sbjct: 647  SPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TR ++++GY    AG NA +AV+S++GY++ED+I+MN+SS++RG  R    + Y+    
Sbjct: 707  QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY     D+I+ P+   PG    +   +  L    L+D+G+ +P   +K  DV I K SP
Sbjct: 767  KYPGGQEDKIVMPE---PGVRGYKGKEYYRL----LEDNGVVSPEVEVKGGDVLIGKVSP 819

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                      + +   R  S    +    GE  +VD V +     G+  +K  +R  R P
Sbjct: 820  PRFLQEFKELSPEQAKRDTSIVTRH----GEMGIVDLVLITETAEGNKLVKVRVRDLRIP 875

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
             +GDKF+SRHGQKGV G ++ Q D P++ +G+ PD+I+NPH  PSRMT+G+++E + GK 
Sbjct: 876  SIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKY 935

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                G     + F     +   +E +   ++K+G+  +  ++ Y G TG  +++ I+ G 
Sbjct: 936  AALSGNIVDATPF-----YKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGV 990

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +ML+ +
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL+ +SD   + VC  CG +G+Y+      IC    +  N+  + + YA KLLIQEL SM
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSM 1110

Query: 1149 NIVPRLKLAE 1158
             I PRL L +
Sbjct: 1111 IISPRLILED 1120


>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1209

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1208 (35%), Positives = 662/1208 (54%), Gaps = 108/1208 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  ++           S +    
Sbjct: 15   DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHESDMTRRY 74

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
             ++F  + + +P++T  DG    + P   RL ++TY+AP+ + +                
Sbjct: 75   EIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMKKRVLIGHSDPNGGQG 134

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            + +  +  E++  +   V IG++PIMLRS  C+L G  + +L  L ECP D GGYFII G
Sbjct: 135  DILWDAEHEESPEDTTKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIING 194

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   L
Sbjct: 195  SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSL 254

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDI 285
             N       ++K  IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I
Sbjct: 255  GNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVI 313

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M+
Sbjct: 314  QDREVALDFIGNR--GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMI 371

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +      
Sbjct: 372  HRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVET---H 428

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
              F+LS  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +
Sbjct: 429  KEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCN 488

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I    
Sbjct: 489  TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLE 548

Query: 525  CLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
              G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I   VSV 
Sbjct: 549  EWGLESLE----ENAHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 604

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS-------FDDFLREG 636
             + ++R + + +D GRVCRPL I +     +++ H+K L  G R        ++  ++ G
Sbjct: 605  RDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHLVKSG 664

Query: 637  LIEYLDVNEENNALIALY-------------------EGDATPDT-----------THIE 666
            +IE LD  EE   +I++                    +GD  P             TH E
Sbjct: 665  IIELLDAEEEETVMISMTPEDLENSRLQSAGIDPHTNDGDYDPAARLKAGNNSHTWTHCE 724

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+P
Sbjct: 725  IHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKP 784

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  +
Sbjct: 785  LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 844

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +K      +   +P R      RM+   +  L     +DDGL APG  +   D+ I K 
Sbjct: 845  EKKSGVQQLEEFEKPTRDN--TLRMKHGTYDKL-----EDDGLIAPGTGVSGEDIIIGKT 897

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P+      +    +T +R R      K    E  +VD+V + ++  G   +K  +R TR
Sbjct: 898  APIPPDSEELGQRTRTHTR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKIRVRSTR 954

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             P++GDKF+SRHGQKG  G   +QED PF+  GI PD+++NPH  PSRMT+G ++E L  
Sbjct: 955  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 1014

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     G     + F +      TVES+S  L + G+   G +++Y G TG  LQA +++
Sbjct: 1015 KVATLIGNEGDATPFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 1069

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  +
Sbjct: 1070 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAGFL 1129

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERL  +SD + + VC +CGL    N K ++  C  CKN    S + +PYA KLL QELQ
Sbjct: 1130 KERLFEASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQ 1189

Query: 1147 SMNIVPRL 1154
            SMNI  RL
Sbjct: 1190 SMNIAARL 1197


>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
 gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
          Length = 1204

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1205 (35%), Positives = 667/1205 (55%), Gaps = 107/1205 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPS--I 78
            D + ++  F   +GLV+Q LDSF+ F+   ++++V  N  ++            D S   
Sbjct: 17   DCWTVISSFFDEKGLVRQQLDSFDEFIQNTMQELVDENPELILDQAEQHTGHNFDQSKRF 76

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---------------E 122
             ++F  + + +P++T  DG    + P   RL ++TYAAP+ + +               E
Sbjct: 77   EIQFGQIYLSRPTITEADGSVVPVFPQEARLRNLTYAAPLYIEMRQKTLHATDELDEAGE 136

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
             +  +  E        V IG++PIMLRS  C+L    + E+  L ECP D GGYFII G+
Sbjct: 137  PIWRTVKEDEGNAVQKVHIGKVPIMLRSAFCILNKLSDQEIYDLNECPYDSGGYFIINGS 196

Query: 183  EKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLLL 235
            EKVL+ QE+++ N V +    +         I ++V    +T+    V    + K   + 
Sbjct: 197  EKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRTKERSMG 256

Query: 236  N------QFVK-KIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDI 285
            N       ++K  IPI VV +A+ + SD++++  +     DP+   LL P I++     I
Sbjct: 257  NVIKATIPYIKVDIPIWVVFRALNVISDRDILDHICYESTDPQMLELLKPCIDD--GFVI 314

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M+
Sbjct: 315  QEREVALDFIGNR--GTTTGLNRERRVRYAQEILQKELLPHVSMAEGSESKKAYFFGYMV 372

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ M  +V +     L K   S
Sbjct: 373  HRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYR----YLQKCVES 428

Query: 406  SR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
            ++ F+L+  I   +I+ GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R 
Sbjct: 429  NKDFNLNLAIKHHTISQGLKYSLATGNWGDQKKAGAAKAGVSQVLNRYTYASTLSHLRRC 488

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  ++      P+I   
Sbjct: 489  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSISAPVIDF- 547

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
              L   +LE L      +  +F  +F NG+ +G HR P    + +R+LRR   I + VSV
Sbjct: 548  --LQEWNLESLEENARSSEATFTKVFVNGVWMGVHRDPAKLVETIRRLRRKDDISQEVSV 605

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLD 642
              + +++ + + +D GRVCRPL I +     +++HH+  L  G + +D  +++G+IE LD
Sbjct: 606  VRDIREKELRVYTDAGRVCRPLFIVENQSLLLEKHHVHALTQGAK-WDSLVKQGIIELLD 664

Query: 643  VNEENNALIALYEGD-----ATPD---------------------------TTHIEIEPF 670
              EE   +IA+   D      TP+                            TH EI P 
Sbjct: 665  AEEEETVMIAMTPEDLENSRMTPEERAAQQAEEEVDMTATKVAHTMANTHTWTHCEIHPS 724

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N + RMD++  +L YPQ+PL TT
Sbjct: 725  MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFILRMDTMANILYYPQKPLATT 784

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            R++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + YT + +K 
Sbjct: 785  RSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYTDMEKKS 844

Query: 791  ANST-SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
                 ++   +P R      RM+   +  L     +DDGL APG  +   D+ I K +P+
Sbjct: 845  VGMMPTEEFEKPSRDN--TLRMKHGTYDKL-----EDDGLIAPGTGVNGEDIIIGKTAPI 897

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
                  +    +  +R R      K    E+ ++D+V L ++++G   I+  +R TR P+
Sbjct: 898  PPDSEELGQRTKNHTR-RDVSTPLKST--ESGIIDQVLLTTNEDGKKLIRVRVRSTRIPQ 954

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKF+SRHGQKG  G   +QED PF+ +GI PD+++NPH  PSRMT+G ++E L  K  
Sbjct: 955  IGDKFASRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPHAIPSRMTIGHLVECLLSKVA 1014

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
               G     + F +      TVE++S++L   GF   G +++Y G TG  LQA +++GP 
Sbjct: 1015 TLIGNEGDATPFTDL-----TVEAVSKSLAAKGFQQRGLEVMYHGHTGRKLQAQVYLGPT 1069

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + ER
Sbjct: 1070 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKER 1129

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L  +SD + + VC +CGL    N K ++  C  CKN    S + +PYA KLL QELQ+MN
Sbjct: 1130 LFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQAMN 1189

Query: 1150 IVPRL 1154
            I PRL
Sbjct: 1190 IAPRL 1194


>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.G.57.14]
 gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.N.15.51]
 gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
 gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
          Length = 1131

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1150 (36%), Positives = 650/1150 (56%), Gaps = 56/1150 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S+ +K++++  + K +GLV+QHLDS+N FV   +++I+     I + I P + +R   +R
Sbjct: 9    SIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI-PGLKVRLGKIR 67

Query: 87   IGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            IG+P +      E+ ++P   RL ++TYAAP+ + +  V+ +       E  +V IG +P
Sbjct: 68   IGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLP 123

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S    +      +L  +GE P DPGGYFI+ G+E+V++ QE L+ NRV++DT K G
Sbjct: 124  IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 183

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +    I+ ++ G  ++       KIP +++M+A+G+ +D+++V 
Sbjct: 184  SNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVY 243

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     L PS+E+ ++  I   + AL+++  +V     G    +R  +A  I+  
Sbjct: 244  AVSLDPEIQNELFPSLEQASS--IANVDDALDFIGSRV---AIGQKRENRIEKAQQIIDK 298

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++    ++ R K +Y+A  + +++E  L +   DDKD+  NKRL L+G L + LF 
Sbjct: 299  YFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFR 358

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  +  L   +  D +T  +   L+TGN+        R
Sbjct: 359  VAFKAFVKDLTYQLE---KSKVRGRKLALKALVRPDIVTERIRHALATGNW-----VGGR 410

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 411  TGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 470

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL---SGEELHNPNSFL----VIFNGLIL 554
            KNLALM  +     E  +    Y +GV  +E +     E   + N +L    VI NG ++
Sbjct: 471  KNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLV 530

Query: 555  GKHRRPKCFADVMRKLRRAGKI------GEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
            G +R  +  A  +R+ RR G+I      G  V+ F+NE    V++  D GRV RPL+I  
Sbjct: 531  GYYRDGEELAKKIRERRRNGEISDEVNVGHIVTDFINE----VHVNCDSGRVRRPLIIVS 586

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +    +++L  G  +FDD +R+G IEYLD  EE NA +AL   D TP+ TH+EI 
Sbjct: 587  NGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIW 646

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
               ILG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQRPL+
Sbjct: 647  SPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TR ++++GY    AG NA +AV+S++GY++ED+I+MN+SS++RG  R    + Y+    
Sbjct: 707  QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY     D+I+ P+   PG    +   +  L    L+D+G+ +P   +K  DV I K SP
Sbjct: 767  KYPGGQEDKIVMPE---PGVRGYKGKEYYRL----LEDNGVVSPEVEVKGGDVLIGKVSP 819

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                      + +   R  S    +    GE  +VD V +     G+  +K  +R  R P
Sbjct: 820  PRFLQEFKELSPEQAKRDTSIVTRH----GEMGIVDLVLITETAEGNKLVKVRVRDLRVP 875

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
             +GDKF+SRHGQKGV G ++ Q D P++ +G+ PD+I+NPH  PSRMT+G+++E + GK 
Sbjct: 876  SIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKY 935

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                G     + F     +   +E +   ++K+G+  +  ++ Y G +G  +++ I+ G 
Sbjct: 936  AALSGNIVDATPF-----YKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGV 990

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +ML+ +
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL+ +SD   + VC  CG +G+Y+      IC    +  N+  + + YA KLLIQEL SM
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSM 1110

Query: 1149 NIVPRLKLAE 1158
             I PRL L +
Sbjct: 1111 IISPRLILED 1120


>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
 gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
          Length = 1131

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1150 (36%), Positives = 650/1150 (56%), Gaps = 56/1150 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S+ ++++++  + K +GLV+QHLDS+N FV   +++I+     I + I P + +R   +R
Sbjct: 9    SIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI-PGLKVRLGKIR 67

Query: 87   IGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            IG+P +      E+ ++P   RL ++TYAAP+ + +  V+ +       E  +V IG +P
Sbjct: 68   IGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLP 123

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S    +      +L  +GE P DPGGYFI+ G+E+V++ QE L+ NRV++DT K G
Sbjct: 124  IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 183

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +    I+ ++ G  ++       KIP +++M+A+G+ +D+++V 
Sbjct: 184  SNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVY 243

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     L PS+E+ ++  I   + AL+++  +V     G    +R  +A  I+  
Sbjct: 244  AVSLDPEIQNELFPSLEQASS--IANVDDALDFIGSRV---AIGQKRENRIEKAQQIIDK 298

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++    ++ R K +Y+A  + +++E  L +   DDKD+  NKRL L+G L + LF 
Sbjct: 299  YFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFR 358

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  +  L   +  D +T  +   L+TGN+        R
Sbjct: 359  VAFKAFVKDLTYQLE---KSKVRGRKLALKALVRPDIVTERIRHALATGNW-----VGGR 410

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 411  TGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 470

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL---SGEELHNPNSFL----VIFNGLIL 554
            KNLALM  +     E  +    Y +GV  +E +     E   + N +L    VI NG ++
Sbjct: 471  KNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLV 530

Query: 555  GKHRRPKCFADVMRKLRRAGKI------GEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
            G +R  +  A  +R+ RR G+I      G  V+ F+NE    V++  D GRV RPL+I  
Sbjct: 531  GYYRDGEELAKKIRERRRKGEISDEVNVGHIVTDFINE----VHVNCDSGRVRRPLIIVS 586

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +    +++L  G  +FDD +R+G IEYLD  EE NA +AL   D TP+ TH+EI 
Sbjct: 587  NGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIW 646

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
               ILG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQRPL+
Sbjct: 647  SPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TR ++++GY    AG NA +AV+S++GY++ED+I+MN+SS++RG  R    + Y+    
Sbjct: 707  QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY     D+I+ P+   PG    +   +  L    L+D+G+ +P   +K  DV I K SP
Sbjct: 767  KYPGGQEDKIVMPE---PGVRGYKGKEYYRL----LEDNGVVSPEVEVKGGDVLIGKVSP 819

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                      + +   R  S    +    GE  +VD V +     G+  +K  +R  R P
Sbjct: 820  PRFLQEFKELSPEQAKRDTSIVTRH----GEMGIVDLVLITETAEGNKLVKVRVRDLRIP 875

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
             +GDKF+SRHGQKGV G ++ Q D P++ +G+ PD+I+NPH  PSRMT+G+++E + GK 
Sbjct: 876  SIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKY 935

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                G     + F     +   +E +   ++K+G+  +  ++ Y G TG  +++ I+ G 
Sbjct: 936  AALSGNIVDATPF-----YKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGV 990

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +ML+ +
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL+ +SD   + VC  CG +G+Y+      +C    +  N+  + + YA KLLIQEL SM
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSM 1110

Query: 1149 NIVPRLKLAE 1158
             I PRL L +
Sbjct: 1111 IISPRLILED 1120


>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis KIN4/I]
 gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
            KIN4/I]
          Length = 1132

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1150 (37%), Positives = 659/1150 (57%), Gaps = 55/1150 (4%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D++ ++  + K +GLV Q L+S+N FV   ++K++      V   +    L F  +R G+
Sbjct: 12   DRWAIMRAYFKEKGLVSQQLESYNKFVTETMQKLIEELGE-VEPFESGYKLEFIKIRYGE 70

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P +    G +  + P  CR+ D+TYAAPI V   Y++  + +    ++  V IG +P+M+
Sbjct: 71   PIIKEKSGGTRPVTPTECRIRDLTYAAPIYV---YMRLRNPKGEIKDEGWVEIGMMPVMV 127

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
            RS    L  K   EL   GE P DPGGYFI+ G+EKV++ QE L+ N+V++D   KG   
Sbjct: 128  RSILDPLSKKSPEELVEAGEDPRDPGGYFIVDGSEKVIVTQEDLALNKVLVD---KGGPQ 184

Query: 209  ASVT------SSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
            ++VT      S+T   + + +++ +K G ++ +      KIP++V+++A+G+ESD+++  
Sbjct: 185  STVTHTAKVLSTTLGYRVQVIVERQKDGTLHAIFPPLPGKIPLVVLIRALGIESDKDITS 244

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
            +V  DP     LLPSIE+ A+  + T + AL+++  ++     G P + R  RA  +L +
Sbjct: 245  LVSFDPEVQQELLPSIEQAAS--VPTVDDALDFIGARI---AIGMPRDKRIERAKQVLDN 299

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
              L ++     +   K  ++A M R+++E  L K   DDKD+  N+RL+L+G +++ LF 
Sbjct: 300  NLLPHLGKRPEDRIKKAIFLAHMARKLLEVYLEKREPDDKDHYANRRLKLAGDMLAALFR 359

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
               + ++++V   ++  + K     R  L   I  + +T  + + L+TGN+       +R
Sbjct: 360  THLRGLLNDVGYQLERSVLK--GEERLKLRILIRSNYLTDKVRQALATGNW-----VGNR 412

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++ TL H+ RV     +++     R L  +QWG +CP +TPEG   GLV
Sbjct: 413  TGVSQLLDRTNWLSTLSHLRRVVSPLARNQPHYEARELHMTQWGRICPFETPEGPNIGLV 472

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGV----EDLELLSGEELHNPNSF---LVIFNGLIL 554
            KNLAL  H++    E  +  +   LGV    E LE +  +E     +     V  NG  +
Sbjct: 473  KNLALSAHISVGVPEEEVEKVLDELGVIRVEEVLEKVKNDEPVPEEAISGARVFLNGRPV 532

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ----RCVYIASDGGRVCRPLVIADKG 610
            G ++     A  +R+LRR GK+   VSV V E      + VYI +D GRV RP+ + + G
Sbjct: 533  GYYKDAHELAQKIRQLRRQGKLHYEVSVGVYENDDGTIKEVYINTDPGRVMRPVFVVENG 592

Query: 611  ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPF 670
              ++K  H++++  G  +F D L  G++E LD +EE NALIA+   D TP  TH+EI   
Sbjct: 593  ELKLKPEHVEKVKKGEWTFKDLLMRGIVELLDADEEENALIAIEPEDITPKHTHMEIWVP 652

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             + GV+A  IPY  HNQSPRN+YQ AM KQA+G  A N + R D+  YLL YP++PL  T
Sbjct: 653  AVFGVVASTIPYLEHNQSPRNSYQSAMAKQALGLYAANFMLRTDTRGYLLHYPEKPLAQT 712

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            + +E++GY+K  AGQNA  A++SY+GY+IEDAI+MN+SS+DRGF R   ++ Y    QKY
Sbjct: 713  KHLEIIGYNKRPAGQNAVAAILSYTGYNIEDAIIMNQSSIDRGFMRATFMRLYQTEEQKY 772

Query: 791  ANSTSDRI--LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
                 D+I   +PD+   G    +           LD+DG+  P   +   DV I K SP
Sbjct: 773  PGGAEDKIEKPKPDQRLVGMREPKAYEK-------LDEDGIVEPETYVVGGDVLIGKSSP 825

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                       G  ++R R A    +   GE  VVD V L  + +G   +K  +R  R P
Sbjct: 826  PRFTEEYKE-MGILETRRRDASVAVR--HGEEGVVDTVILTENIDGIKMVKVRVRSLRIP 882

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            E+GDKF+SRHGQKGV G ++   D P+SE G+ PD+I+NPH FPSRMT+G++IE +  KA
Sbjct: 883  EIGDKFASRHGQKGVIGMVLPHYDMPYSEFGLVPDIILNPHAFPSRMTLGQLIESIAAKA 942

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                GR    + F     + + ++++ + LV+ GF  +G ++++ G TG  +   +F+G 
Sbjct: 943  AAFRGREVDATPF-----YKEPLDNLRKILVERGFPPDGTEVMFDGRTGEMIARPVFIGV 997

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            ++YQ+L HMV DK+HAR  GP  +LTRQPTEGR R GGLR GEMERD L+A+GAS L+ E
Sbjct: 998  VFYQRLYHMVSDKIHARARGPVQILTRQPTEGRTRKGGLRFGEMERDVLVAHGASQLLVE 1057

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL+ SSD  +V VC  CG +G+++      +C        +  ++L YA KLLIQE+ SM
Sbjct: 1058 RLLKSSDATKVWVCAKCGHIGWWDANKGKPVCPIHGERGEMYQVELSYAFKLLIQEILSM 1117

Query: 1149 NIVPRLKLAE 1158
             I  RL+L +
Sbjct: 1118 GIAARLRLGD 1127


>gi|70606496|ref|YP_255366.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius DSM
            639]
 gi|449066708|ref|YP_007433790.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius N8]
 gi|449068982|ref|YP_007436063.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
            Ron12/I]
 gi|73920765|sp|P11513.2|RPOB_SULAC RecName: Full=DNA-directed RNA polymerase subunit B
 gi|68567144|gb|AAY80073.1| DNA directed RNA polymerase subunit B [Sulfolobus acidocaldarius DSM
            639]
 gi|449035216|gb|AGE70642.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius N8]
 gi|449037490|gb|AGE72915.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
            Ron12/I]
          Length = 1126

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1147 (36%), Positives = 650/1147 (56%), Gaps = 56/1147 (4%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            ++ +   F K RGLV+QHLDSFN F+   +++++     IV+ + P + ++   +R  +P
Sbjct: 7    RWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEV-PGLKIKLGKIRYEKP 65

Query: 91   SM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            S+  T  G   ++ P   RL ++TY++PI +++  V+ +       E  ++ IG +PIML
Sbjct: 66   SIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENN----IEGEPIEIYIGDLPIML 121

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG-NI 207
            +S           +L  +GE P DPGGYFI+ G+EKV++ QE L+ NRV++D  K G NI
Sbjct: 122  KSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNI 181

Query: 208  N--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A VTSS    + + +I+ ++   + +       +IP  ++M+A+G  +D+++V  V 
Sbjct: 182  THVAKVTSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVS 241

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP+    LLPS+E+ ++  I + E+AL+++  +V     G    +R  +A  ++   FL
Sbjct: 242  LDPQIQNELLPSLEQASS--ITSAEEALDFIGNRV---AIGQKRENRIQKAEQVIDKYFL 296

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++     + + K +Y+A  + +++E  L +   DDKD+  NKR+ L+G L + LF   F
Sbjct: 297  PHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAF 356

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGM 444
            K  + ++   ++       R  R  L+  +  D IT  +   L+TGN+        R G+
Sbjct: 357  KAFVKDLVYQLE---KSKVRGRRLSLTALVRADIITERIRHALATGNW-----VGGRTGV 408

Query: 445  TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
            +Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLVKNL
Sbjct: 409  SQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNL 468

Query: 505  ALMTHVTTDEEEGPLISLCYCLGV---EDLELLSGEELHNPNSFL----VIFNGLILGKH 557
            AL+  V+    E  +  + Y LGV   ED+     E+  +   ++    V  NG +LG +
Sbjct: 469  ALLAQVSVGINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYY 528

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSV------FVNEKQRCVYIASDGGRVCRPLVIADKGI 611
               K  A  +R+ RR GK+ + V+V      ++NE    V+I  D GRV RPL+I + G 
Sbjct: 529  EDGKELAKKIRESRRQGKLSDEVNVAYIATDYLNE----VHINCDAGRVRRPLIIVNNGT 584

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +    +K+L +G  +FDD +++G IE++D  EE NA +AL   D TPD TH+EI P  
Sbjct: 585  PLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSA 644

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG+IA +IPYP HNQSPRNTYQ AM KQ++G  A N   R D+  +LL YPQ PL+ TR
Sbjct: 645  ILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTR 704

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
             + ++GY+   AG NA +A+MSY+GY++ED+I+MNKSS++RG  R    + Y+    KY 
Sbjct: 705  MLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYP 764

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
                D+I+ P+    G       +       +L+D+G+ +P   +K  DV I K SP   
Sbjct: 765  GGQEDKIVTPEAGVKG-------YKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRF 817

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
                   + +   R  S    +    GE  +VD V +     G+  +K  +R  R PE+G
Sbjct: 818  LQEFKELSPEQAKRDTSIVTRH----GENGIVDLVLITETLEGNKLVKVRVRDLRIPEIG 873

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF++RHGQKGV G ++ Q D P++ +GI PD+I+NPH  PSRMT+G+++E +GGK    
Sbjct: 874  DKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAAL 933

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G+    + F E       ++ + + ++K G   +  +++Y G TG  L++ I  G +YY
Sbjct: 934  SGKPVDATPFLE----TPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYY 989

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKL HMV DKMHAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +MLI +RL+
Sbjct: 990  QKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLL 1049

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
             +SD   V +C  CG +G+Y+      +C    +   +  + + YA KLLIQEL SM I 
Sbjct: 1050 DNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVIS 1109

Query: 1152 PRLKLAE 1158
            PRL L E
Sbjct: 1110 PRLILGE 1116


>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
 gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 1131

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1150 (36%), Positives = 649/1150 (56%), Gaps = 56/1150 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S+ +K++++  + K +GLV+QHLDS+N FV   +++I+     I + I P + +R   +R
Sbjct: 9    SIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI-PGLKVRLGKIR 67

Query: 87   IGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            IG+P +      E+ ++P   RL ++TYAAP+ + +  V+ +       E  +V IG +P
Sbjct: 68   IGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLP 123

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S    +      +L  +GE P DPGGYFI+ G+E+V++ QE L+ NRV++DT K G
Sbjct: 124  IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 183

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +    I+ ++ G  ++       KIP +++M+A+G+ +D+++V 
Sbjct: 184  SNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVY 243

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     L PS+E+ ++  I   + AL+++  +V     G    +R  +A  I+  
Sbjct: 244  AVSLDPEIQNELFPSLEQASS--IANVDDALDFIGSRV---AIGQKRENRIEKAQQIIDK 298

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++    ++ R K +Y+A  + +++E  L +   DDKD+  NKRL L+G L + LF 
Sbjct: 299  YFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFR 358

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  +  L   +  D +T  +   L+TGN+        R
Sbjct: 359  VAFKAFVKDLTYQLE---KSKVRGRKLALKALVRPDIVTERIRHALATGNW-----VGGR 410

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 411  TGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 470

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL---SGEELHNPNSFL----VIFNGLIL 554
            KNLALM  +     E  +    Y +GV  +E +     E   + N +L    VI NG ++
Sbjct: 471  KNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLV 530

Query: 555  GKHRRPKCFADVMRKLRRAGKI------GEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
            G +R  +  A  +R+ RR G+I      G  V+ F+NE    V++  D GRV RPL+I  
Sbjct: 531  GYYRDGEELAKKIRERRRNGEISDEVNVGHIVTDFINE----VHVNCDSGRVRRPLIIVS 586

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +    +++L  G  +FDD +R+G IEYLD  EE N  +AL   D TP+ TH+EI 
Sbjct: 587  NGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENGYVALEPSDLTPEHTHLEIW 646

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
               ILG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQRPL+
Sbjct: 647  SPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TR ++++GY    AG NA +AV+S++GY++ED+I+MN+SS++RG  R    + Y+    
Sbjct: 707  QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY     D+I+ P+   PG    +   +  L    L+D+G+ +P   +K  DV I K SP
Sbjct: 767  KYPGGQEDKIVMPE---PGVRGYKGKEYYRL----LEDNGVVSPEVEVKGGDVLIGKVSP 819

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                      + +   R  S    +    GE  +VD V +     G+  +K  +R  R P
Sbjct: 820  PRFLQEFKELSPEQAKRDTSIVTRH----GEMGIVDLVLITETAEGNKLVKVRVRDLRVP 875

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
             +GDKF+SRHGQKGV G ++ Q D P++ +G+ PD+I+NPH  PSRMT+G+++E + GK 
Sbjct: 876  SIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKY 935

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                G     + F     +   +E +   ++K+G+  +  ++ Y G +G  +++ I+ G 
Sbjct: 936  AALSGNIVDATPF-----YKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGV 990

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +ML+ +
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL+ +SD   + VC  CG +G+Y+      IC    +  N+  + + YA KLLIQEL SM
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSM 1110

Query: 1149 NIVPRLKLAE 1158
             I PRL L +
Sbjct: 1111 IISPRLILED 1120


>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1217

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1237 (35%), Positives = 667/1237 (53%), Gaps = 148/1237 (11%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGI---DPSIFLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 6    YFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIY 65

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     ++   +     IG+I
Sbjct: 66   LSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQIQTQHQKTFIGKI 125

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K 
Sbjct: 126  PIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD 185

Query: 205  GNI------NASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                      + + +S+    +  V  M +G           ++   L    +++PI++V
Sbjct: 186  SKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIV 245

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL ++  +  +   
Sbjct: 246  FRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP-- 301

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  +L+   L +V V +     K +++  M+ R++ A L +  +DD+D+ 
Sbjct: 302  GVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 361

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            GNKRL+L+G L++ LF  +FK ++ E+    QK +D       R   F+L   I    I+
Sbjct: 362  GNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID-------RGKDFNLELAIKTRIIS 414

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL+ +L+TGN+ DVK+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 415  DGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 474

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE +S   +
Sbjct: 475  HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 534

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G H+ P+   + +RKLRR   I    VS+  + ++R + I +D G
Sbjct: 535  ADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 592

Query: 599  RVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+CRPL+I +K    +K  H+ +L +      S+ D +  G++EY+D  EE   ++A+  
Sbjct: 593  RICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM-- 650

Query: 656  GDATPDT------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
               TPD             TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 651  ---TPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 707

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED++
Sbjct: 708  VYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSV 767

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+S++DRGF R +  + Y     K      +   +P R     E  Q + H+  +   
Sbjct: 768  IMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTR-----ETCQGMRHA--IYEK 820

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDGL APG  +   DV I K   L      +     T+ RY     +      ET +V
Sbjct: 821  LDDDGLIAPGVRVSGEDVIIGKTVTLPENEDELD---GTNRRYTKRDCSTFLRTSETGIV 877

Query: 884  DRVALCSDKNG-DLC-----------------------------IKFLIRHTRRPELGDK 913
            D+V +  ++ G   C                                 +R  R P++GDK
Sbjct: 878  DQVMVTLNQEGYKFCKIRVSRRHLHLTRLRSSPGFKPSRMLSHSCSLQVRSVRIPQIGDK 937

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMTVG +IE L GK   S  
Sbjct: 938  FASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVWTSTS 997

Query: 974  RFH-------------------------YGSAF------GE-----PSGHADTVESISET 997
              H                         +  +F      GE     P   A  V+ +S  
Sbjct: 998  TLHLPELHCSVPLILVAANTGWAVLYQLFPVSFQVSANKGEIGDATPFNDAVNVQKVSNL 1057

Query: 998  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP 1057
            L ++G+   G +++Y+G TG  L + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP
Sbjct: 1058 LSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQP 1117

Query: 1058 TEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKA 1117
             EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CGL+   N +   
Sbjct: 1118 MEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHT 1177

Query: 1118 GICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1178 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1214


>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
          Length = 1083

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1096 (38%), Positives = 632/1096 (57%), Gaps = 71/1096 (6%)

Query: 102  NPHMC-----RLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVL 155
            +P +C     RL ++TY+AP+ V+I + V     E+   +     IG+IPIMLRS  C+L
Sbjct: 13   SPRICGKKHARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLL 72

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINA 209
             G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K       G   +
Sbjct: 73   NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 132

Query: 210  SVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             + +S+    +  V  + +G           ++   L    +++PI++V +A+G  SD++
Sbjct: 133  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 192

Query: 259  VVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            +++ +     DP    ++ PS++E     I  Q  AL ++  +  +   G     R   A
Sbjct: 193  ILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYA 248

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L+   L +V V +     K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L
Sbjct: 249  KEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPL 308

Query: 376  VSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            ++ LF  +FK ++ EV    QK +D       R   F+L   I    I+ GL+ +L+TGN
Sbjct: 309  LAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFNLELAIKTRIISDGLKYSLATGN 361

Query: 432  F-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            + D K+    R G++QVL RL+F  TL H+ R++    +  K++ PR L  + WGM+CP 
Sbjct: 362  WGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPA 421

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG A GLVKNLALM +++   +  P++       +E+LE +S   + +     V  N
Sbjct: 422  ETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFV--N 479

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            G  +G H+ P+   + +RKLRR   I    VS+  + ++R + I +D GR+CRPL+I +K
Sbjct: 480  GCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK 539

Query: 610  GISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT---- 662
                +K+ H+ +L +      S+ D +  G++EY+D  EE   ++A+   D         
Sbjct: 540  QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 599

Query: 663  ---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
               TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++
Sbjct: 600  STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHV 659

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R + 
Sbjct: 660  LYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVF 719

Query: 780  VKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
             + Y     K      +   +P R     E  Q + H+  +   LDDDGL APG  +  +
Sbjct: 720  YRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGD 772

Query: 840  DVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
            DV I+K   L E    + S    T+ RY     +      ET +VD+V +  ++ G    
Sbjct: 773  DVIISKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFC 828

Query: 899  KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
            K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G
Sbjct: 829  KIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIG 888

Query: 959  KMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGC 1018
             +IE L GK  VS  +   G A   P   A  V+ IS  L  +G+   G +++Y+G TG 
Sbjct: 889  HLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGR 944

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
             + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC I
Sbjct: 945  KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQI 1004

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYAC 1138
            A+GA+  + ERL  +SDP++V VC +CG++   N +     C  C+N   IS +++PYAC
Sbjct: 1005 AHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYAC 1064

Query: 1139 KLLIQELQSMNIVPRL 1154
            KLL QEL SM+I PR+
Sbjct: 1065 KLLFQELMSMSIAPRM 1080


>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            L.S.2.15]
 gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
          Length = 1131

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1150 (36%), Positives = 649/1150 (56%), Gaps = 56/1150 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S+ +K++++  + K +GLV+QHLDS+N FV   +++I+     I + I P + +R   +R
Sbjct: 9    SIDEKWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI-PGLKVRLGKIR 67

Query: 87   IGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            IG+P +      E+ ++P   RL ++TYAAP+ + +  V+ +       E  +V IG +P
Sbjct: 68   IGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLP 123

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S    +      +L  +GE P DPGGYFI+ G+E+V++ QE L+ NRV++DT K G
Sbjct: 124  IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 183

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +    I+ ++ G  ++       KIP +++M+A+G+ +D+++V 
Sbjct: 184  SNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVY 243

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     L PS+E+ ++  I   + AL+++  +V     G    +R  +A  I+  
Sbjct: 244  AVSLDPEIQNELFPSLEQASS--IANVDDALDFIGSRV---AIGQKRENRIEKAQQIIDK 298

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++    ++ R K +Y+A  + +++E  L +   DDKD+  NKRL L+G L + LF 
Sbjct: 299  YFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFR 358

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  +  L   +  D +T  +   L+TGN+        R
Sbjct: 359  VAFKAFVKDLTYQLE---KSKVRGRKLALKALVRPDIVTERIRHALATGNW-----VGGR 410

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 411  TGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 470

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL---SGEELHNPNSFL----VIFNGLIL 554
            KNLALM  +     E  +    Y +GV  +E +     E   + N +L    VI NG ++
Sbjct: 471  KNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLV 530

Query: 555  GKHRRPKCFADVMRKLRRAGKI------GEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
            G +R  +  A  +R+ RR G+I      G  V+ F+NE    V++  D GRV RPL+I  
Sbjct: 531  GYYRDGEELAKKIRERRRNGEISDEVNVGHIVTDFINE----VHVNCDSGRVRRPLIIVS 586

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +    +++L  G  +FDD +R+G IEYLD  EE NA +AL   D TP+ TH+EI 
Sbjct: 587  NGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIW 646

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
               ILG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQRPL+
Sbjct: 647  SPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 706

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TR ++++GY    AG NA +AV+S++GY++ED+I+MN+SS++RG  R    + Y+    
Sbjct: 707  QTRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 766

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY     D+I+ P+   PG    +   +  L    L+D+G+ +P   +K  DV I K SP
Sbjct: 767  KYPGGQEDKIVMPE---PGVRGYKGKEYYRL----LEDNGVVSPEVEVKGGDVLIGKVSP 819

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                      + +   R  S    +    GE  +VD V +     G+  +K  +R  R P
Sbjct: 820  PRFLQEFKELSPEQAKRDTSIVTRH----GEMGIVDLVLITETAEGNKLVKVRVRDLRVP 875

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
             +GDKF+SRHGQKGV G ++ Q D P++ +G+ PD+I+NPH  PSRMT+G+++E + GK 
Sbjct: 876  SIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKY 935

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                G     +       +   +E +   ++K+G+  +  ++ Y G +G  +++ I+ G 
Sbjct: 936  AALSGNIVDATPI-----YKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGV 990

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +ML+ +
Sbjct: 991  VYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1050

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL+ +SD   + VC  CG +G+Y+      IC    +  N+  + + YA KLLIQEL SM
Sbjct: 1051 RLLDNSDRTTIYVCDQCGYIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSM 1110

Query: 1149 NIVPRLKLAE 1158
             I PRL L +
Sbjct: 1111 IISPRLILED 1120


>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
          Length = 1123

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1122 (37%), Positives = 639/1122 (56%), Gaps = 74/1122 (6%)

Query: 76   PSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEK 131
            P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +
Sbjct: 30   PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVE 89

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            T  +K    IG+IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+
Sbjct: 90   TQHQK--TFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 147

Query: 192  LSKNRVIIDTDKKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLL 234
            ++ N V + + K G       I + +  S+    +  V  M +G           ++  +
Sbjct: 148  MATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAI 207

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKA 291
            L    ++IPIM+V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  A
Sbjct: 208  LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVA 265

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L ++  +  R   G   + R   A  IL+   L +V V +     K +++  M+ R++ A
Sbjct: 266  LNFIGARGARP--GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 323

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
             L +  +DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   
Sbjct: 324  SLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKD 376

Query: 408  FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQ 466
            F+L   I  + IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+  
Sbjct: 377  FNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSP 436

Query: 467  FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL 526
              +  K++ PR L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++      
Sbjct: 437  IGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 496

Query: 527  GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVN 585
             +E+LE ++   + +     V  NG  +G HR P+     +RKLRR   I    VS+  +
Sbjct: 497  SMENLEEIAPSAIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRD 554

Query: 586  EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEY 640
             + R + I +D GR+CRPL+I + G   +K+ H++ L +  R ++++     +  G++EY
Sbjct: 555  IRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEY 612

Query: 641  LDVNEENNALIALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
            +   EE   +IA+   D   D         TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 613  MYTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNT 672

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++
Sbjct: 673  YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAIL 732

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             Y+GY+ ED++++N S+++RGF R +  + Y     K      +   +P R     + M+
Sbjct: 733  CYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGT--CQGMR 790

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
              H+  L     DDDG+ APG  +  +DV I K   L      +    +  S+ R A   
Sbjct: 791  NAHYDKL-----DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSK-RDASTF 844

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
             +  + ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED
Sbjct: 845  LR--NSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQED 902

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
              F+  G+ PD+I+NPH  PSRMT+G +IE L GK G + G     + F +    A  V+
Sbjct: 903  MAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQ 958

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
             IS  L ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +
Sbjct: 959  KISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 1018

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            L RQP EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ V +C  CGL+   N
Sbjct: 1019 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIAN 1078

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +     C  CKN   IS ++LPYA KLL QEL SMNI PRL
Sbjct: 1079 LRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1120


>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
            B]
          Length = 1242

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1223 (35%), Positives = 667/1223 (54%), Gaps = 125/1223 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  ++       +G +  +  R+
Sbjct: 37   DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHEADVTRRY 96

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +++ GQ     P++T  DG    + P   R  ++TY+AP+ + I               
Sbjct: 97   -EIKFGQIYLSRPTVTEADGSVVPVFPQEARQRNLTYSAPLYIEIKKRVLIGREDPDSAT 155

Query: 122  -EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
             + +      +T  +   V IG++PIMLRS  C+L+   ++EL  L ECP D GGYFII 
Sbjct: 156  GDILWEPEQRETAEDTTKVWIGKVPIMLRSTFCILHNVQDSELYDLNECPYDSGGYFIIN 215

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYL 233
            G+EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   
Sbjct: 216  GSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQFQVKLYHRNQERS 275

Query: 234  LLN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LD 284
            L N       ++K  IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    
Sbjct: 276  LGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFV 334

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M
Sbjct: 335  IQDREVALDFIGNR--GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYM 392

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V +     L K   
Sbjct: 393  IHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYR----YLQKCVE 448

Query: 405  SSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
            S + F+LS  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 449  SHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRR 508

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I  
Sbjct: 509  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEF 568

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I   VS
Sbjct: 569  LEEWGLESLE----ENAHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVS 624

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIAD-----------KGISRIKEHHMKELLDG----- 625
            V  + ++R + I +D GRVCRPL I +             +SR KE   + +  G     
Sbjct: 625  VVRDIRERELRIYTDAGRVCRPLFIVEDQQLLLTKKHISWLSRSKEEEKQRMSRGEDKDA 684

Query: 626  ----VRSFDDFLREGLIEYLDVNEENNALIALYEGD------------------------ 657
                V  +D+ +++G+IE LD  EE   +I +   D                        
Sbjct: 685  EGAYVYRWDNLIKDGVIELLDAEEEETVMICMSPEDLENTRLIAAGVDPRADSTEVDPSA 744

Query: 658  ---ATPDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                TP     TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N L 
Sbjct: 745  RLKPTPSIHTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLV 804

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+D
Sbjct: 805  RMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSID 864

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R I  + Y  + +K      +   +P R      RM+   +  L     +DDGL A
Sbjct: 865  RGLFRSIYYRSYMDLEKKSGVQQLEEFEKPSREN--TLRMKHGTYDKL-----EDDGLIA 917

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +   D+ I K +P+      +    +  +R R      K    E+ ++D+V + ++
Sbjct: 918  PGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTR-RDVSTPLKST--ESGIIDQVLITTN 974

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
              G   +K  +R TR P+ GDKF+SRHGQKG  G   +QED PF+  GI PD+++NPH  
Sbjct: 975  AEGQKFVKIRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAI 1034

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G ++E L  K     G     + F +      TVES+S+ L + G+   G +++
Sbjct: 1035 PSRMTIGHLVECLLSKVATLIGNEGDATPFTDL-----TVESVSQVLRQKGYQSRGLEVM 1089

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y G TG  LQA +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GE
Sbjct: 1090 YHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGE 1149

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDC+I++G +  + ERL  +SD + + VC +CGL    N K +   C +CKN   IS 
Sbjct: 1150 MERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQMFECRSCKNKTAISQ 1209

Query: 1132 MKLPYACKLLIQELQSMNIVPRL 1154
            + +PYA KLL QELQSMNI  RL
Sbjct: 1210 LYIPYAAKLLFQELQSMNIAARL 1232


>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Papio anubis]
          Length = 1083

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1096 (38%), Positives = 631/1096 (57%), Gaps = 71/1096 (6%)

Query: 102  NPHMC-----RLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVL 155
            +P +C     RL ++TY+AP+ V+I + V     E+   +     IG+IPIMLRS  C+L
Sbjct: 13   SPRICGKKHARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLL 72

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINA 209
             G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K       G   +
Sbjct: 73   NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 132

Query: 210  SVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             + +S+    +  V  + +G           ++   L    +++PI++V +A+G  SD++
Sbjct: 133  CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 192

Query: 259  VVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            +++ +     DP    ++ PS++E     I  Q  AL ++  +  +   G     R   A
Sbjct: 193  ILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYA 248

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L+   L +V V +     K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L
Sbjct: 249  KEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPL 308

Query: 376  VSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            ++ LF  +FK ++ EV    QK +D       R   F+L   I    I+ GL+ +L+TGN
Sbjct: 309  LAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFNLELAIKTRIISDGLKYSLATGN 361

Query: 432  F-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            + D K+    R G++QVL RL+F  TL H+ R++    +  K++ PR L  + WGM+CP 
Sbjct: 362  WGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPA 421

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG A GLVKNLALM +++   +  P++       +E+LE +S   + +     V  N
Sbjct: 422  ETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFV--N 479

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            G  +G H+ P+   + +RKLRR   I    VS+  + ++R + I +D GR+CRPL+I +K
Sbjct: 480  GCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK 539

Query: 610  GISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT---- 662
                +K+ H+ +L +      S+ D +  G++EY+D  EE   ++A+   D         
Sbjct: 540  QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 599

Query: 663  ---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
               TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++
Sbjct: 600  STYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHV 659

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R + 
Sbjct: 660  LYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVF 719

Query: 780  VKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
             + Y     K      +   +P R     E  Q + H+  +   LDDDGL APG  +  +
Sbjct: 720  YRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGD 772

Query: 840  DVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
            DV I K   L E    + S    T+ RY     +      ET +VD+V +  ++ G    
Sbjct: 773  DVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFC 828

Query: 899  KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
            K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I+NPH  PSRMT+G
Sbjct: 829  KIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIG 888

Query: 959  KMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGC 1018
             +IE L GK  VS  +   G A   P   A  V+ IS  L  +G+   G +++Y+G TG 
Sbjct: 889  HLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGR 944

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
             + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC I
Sbjct: 945  KITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQI 1004

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYAC 1138
            A+GA+  + ERL  +SDP++V VC +CG++   N +     C  C+N   IS +++PYAC
Sbjct: 1005 AHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYAC 1064

Query: 1139 KLLIQELQSMNIVPRL 1154
            KLL QEL SM+I PR+
Sbjct: 1065 KLLFQELMSMSIAPRM 1080


>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
          Length = 1226

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1208 (35%), Positives = 668/1208 (55%), Gaps = 109/1208 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  ++       +G D  +  R+
Sbjct: 35   DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQSDQHTGHDGDVNRRY 94

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-----------EYVQ 125
             +++ GQ     P++T  DG    + P   RL ++TY+AP+ + +           + + 
Sbjct: 95   -EIKFGQIYLSRPTVTEADGSVAPVFPQEARLRNLTYSAPLYIEMKKRVLVGREDPDSLT 153

Query: 126  GSHTEKTTMEKN-----DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            G  T +   E+N      V IG++PIMLRS  C+L+G  + ++  L ECP D GGYFII 
Sbjct: 154  GDMTWEPEHEENPEDTRKVWIGKVPIMLRSSFCILHGLVDEDVYDLNECPFDSGGYFIIN 213

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYL 233
            G+EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   
Sbjct: 214  GSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQFQVKLFHRNQERS 273

Query: 234  LLN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LD 284
            L N       +++  IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    
Sbjct: 274  LGNVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFV 332

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M
Sbjct: 333  IQDREVALDFIGNR--GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYM 390

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A + +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +     
Sbjct: 391  IHRLLLAAMERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET--- 447

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F+L+  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R 
Sbjct: 448  HKEFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRC 507

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I   
Sbjct: 508  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFL 567

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I   VSV
Sbjct: 568  EEWGLESLE----ENAHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSV 623

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLREG 636
              + ++R + + +D GRVCRPL I +     + + H+K L DGV        +D  ++ G
Sbjct: 624  VRDIRERELRLYTDAGRVCRPLFIVENQQLLLTKKHIKYLNDGVDDQNEQYKWDQLIKGG 683

Query: 637  LIEYLDVNEENNALIALYEGDAT---------------PD---------------TTHIE 666
            +IE LD  EE   +I++   D                 PD                TH E
Sbjct: 684  VIELLDAEEEETVMISMNPEDLENSRLQSSGMDPHANDPDFDPAARLKPTITAHTWTHCE 743

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+P
Sbjct: 744  IHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKP 803

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y  +
Sbjct: 804  LATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDL 863

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +K      +   +P R      RM+   +  L     +DDGL APG  +   D+ I K 
Sbjct: 864  EKKSGVQQLEEFEKPTREN--TLRMKHGTYDKL-----EDDGLIAPGTGVNGEDIIIGKT 916

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P+      +    +  +R R      K    E+ ++D+V + ++  G   +K  +R TR
Sbjct: 917  APIPPDSEELGQRTRAHTR-RDVSTPLKST--ESGIIDQVLITTNAEGQKFVKIRVRSTR 973

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  
Sbjct: 974  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLS 1033

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     G     + F +      TVES+S+ L + G+   G +++Y G TG  LQA +++
Sbjct: 1034 KVATLIGNEGDATPFTDL-----TVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYL 1088

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  +
Sbjct: 1089 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFL 1148

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERL  +SD + + VC +CGL    N K +   C +CKN    S + +PYA KLL QELQ
Sbjct: 1149 KERLFEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQLYIPYAAKLLFQELQ 1208

Query: 1147 SMNIVPRL 1154
            SMNI  RL
Sbjct: 1209 SMNIAARL 1216


>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
          Length = 1123

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1116 (38%), Positives = 630/1116 (56%), Gaps = 68/1116 (6%)

Query: 79   FLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEK 136
             L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V+I + +     E    + 
Sbjct: 33   LLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIMKDGEEPIETQH 92

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
                IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N 
Sbjct: 93   QKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNT 152

Query: 197  VIIDTDK------KGNINASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVK 240
            V + + K      K  I + +  S+    +  +  M K          G+  + +  +VK
Sbjct: 153  VYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIVAIIPYVK 212

Query: 241  K-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
            + IPIMVV +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++ 
Sbjct: 213  QEIPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIG 270

Query: 297  GKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
             +  R+  G     R   A  IL+   L +V + +     K +++  M+ R++ A L + 
Sbjct: 271  TRGARA--GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 328

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQ 412
             +DD+D+ GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L  
Sbjct: 329  ELDDRDHYGNKRLDLAGPLLAFLFRALFKNLMKEVRLYAQKFID-------RGKDFNLEL 381

Query: 413  FIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
             I    IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  
Sbjct: 382  AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG 441

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K++ PR L  + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+L
Sbjct: 442  KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 501

Query: 532  ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRC 590
            E ++   + +     V  NG  +G HR P      +RKLRR   I    VS+  + + R 
Sbjct: 502  EEIAPSAIADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDRE 559

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
            + I +D GR+ RPL+I +     +K+ H   +KE       + + +  G++EY+D  EE 
Sbjct: 560  IRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEE 619

Query: 648  NALIALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
              +IA+   D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGK
Sbjct: 620  TVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 679

Query: 700  QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
            QAMG    N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ 
Sbjct: 680  QAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQ 739

Query: 760  EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNL 819
            ED++++N S+++RGF R +  + Y     K      ++  +P R      R       N 
Sbjct: 740  EDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGMR-------NA 792

Query: 820  LLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDG 878
            +   LDDDG+ APG  +  +DV I K   L ET   + S T +   R  S        + 
Sbjct: 793  IYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLR----NS 848

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  
Sbjct: 849  ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCE 908

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PD+I+NPH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L
Sbjct: 909  GLTPDIIINPHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLL 964

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP 
Sbjct: 965  QEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 1024

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +    
Sbjct: 1025 EGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTF 1084

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C  CKN   IS ++LPYA KLL QEL +MNI PRL
Sbjct: 1085 ECKGCKNKTQISQIRLPYAAKLLFQELMAMNIAPRL 1120


>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
 gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
          Length = 1210

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1218 (36%), Positives = 665/1218 (54%), Gaps = 122/1218 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  + +   L +Q L SF+ FV   +++IV  +  +        +G       R 
Sbjct: 16   DCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDYTRRY 75

Query: 82   ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE----YVQGSH----- 128
               F  + + +P+MT  DG +  + P   RL ++TY++P+ V++       Q S+     
Sbjct: 76   EINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMRAQDSNVPIGE 135

Query: 129  ----TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
                TE+   E + V IG+IPIMLRS  C+L G  ++EL  L ECP D GGYFII G+EK
Sbjct: 136  EIWLTEEEDDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEK 195

Query: 185  VLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKSKTVIQMEKGK----- 230
            V++ QE+ + N  I+   +K           I +++   +  + S  +  M +       
Sbjct: 196  VIIAQERSAAN--IVQVFRKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARSTENSGQ 253

Query: 231  -MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECANLDIY 286
             +   L      IPI+VV +A+G+  D+++++ +  DP   +   ++ P IEE     I 
Sbjct: 254  TIKATLPYIRSDIPIVVVFRALGVVPDRDILEHICYDPNDLQMLEMMKPCIEEA--FVIQ 311

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
             ++ AL+Y+ GK + ST G     R   A  IL+   L ++         K F++  M+ 
Sbjct: 312  DKDVALDYI-GK-RGSTTGVTREKRLRYAHDILQKEMLPHITTLEGFETRKAFFLGYMVH 369

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
            RM+   L +   DD+D+ G KRL+L+G L++ LF  LFK M  +V K     + K   ++
Sbjct: 370  RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFKKMTRDVYK----YMQKCVETN 425

Query: 407  R-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            R F+L+  +  ++IT GL  +L+TGN+ D KR   +R G++QVL R +F  TL H+ R +
Sbjct: 426  REFNLTLAVKSNTITNGLRYSLATGNWGDQKRGLANRVGVSQVLNRYTFASTLSHLRRTN 485

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM++V+      P+I    
Sbjct: 486  TPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLE 545

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
              G+E LE  +     +PN+  V  NG+ LG HR P    + +R LRR   I   VS+  
Sbjct: 546  EWGMESLEDYNPSA--SPNATKVFVNGIWLGVHRDPVHLTETLRSLRRRLDISAEVSIVR 603

Query: 585  NEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFD------- 630
            + +++ + + +D GR+CRPL I D       KG   I++ H+++LL+    FD       
Sbjct: 604  DIREKELRLFTDAGRICRPLFIVDNDSNSDTKGELCIRKEHIQQLLEDRDRFDINAEQRF 663

Query: 631  ---DFLREGLIEYLDVNEENNALIAL--------------YEGDATPD------------ 661
                 +  GLIEYLD  EE   +IA+              YE     D            
Sbjct: 664  GWSSLIASGLIEYLDAEEEETVMIAMSPDDLELSRQANAGYEMQEELDPAKRVKPAPNPH 723

Query: 662  ---TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
                TH EI P  ILG++A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  
Sbjct: 724  VHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQVRMDTMAN 783

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+I+MN+SS+DRG  R I
Sbjct: 784  ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQSSIDRGLFRSI 843

Query: 779  VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
              + Y    +K   +  +   RP R+     RM+   +  L     +DDGL APG  +  
Sbjct: 844  FYRTYMDQEKKIGMTVMEEFERPTRST--TLRMKHGTYDKL-----EDDGLIAPGTRVSG 896

Query: 839  NDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVALCSDKNGDL 896
            +D+ I K +P+      +    Q       A++    P    E+ +VD+V + +++ G  
Sbjct: 897  DDIIIGKTAPVPPDHEELGQRTQL-----HAKRDVSTPLRSTESGIVDQVMVTTNQEGLK 951

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             +K  +R TR P++GDKF+SRHGQKG  G   + ED PFS +GI PD+I+NPH  PSRMT
Sbjct: 952  FVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMT 1011

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            V  ++E    K     G     + F E      TVE++S+ L  HGF   G +++Y G T
Sbjct: 1012 VAHLVECQLSKVSALSGLEGDATPFTEV-----TVEAVSKLLRSHGFHSRGFEVMYHGHT 1066

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  L A +F+GP YYQ+LKH+V DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERDC
Sbjct: 1067 GRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDC 1126

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
             I++G S ++ ERL   SD + V VC +CGL+   + K  +  C +C+N    S + LPY
Sbjct: 1127 QISHGCSSVLRERLFDCSDAYRVIVCDLCGLIAIASFKKNSYECRSCQNRTRFSQIYLPY 1186

Query: 1137 ACKLLIQELQSMNIVPRL 1154
            A KLL QEL SMNI PRL
Sbjct: 1187 AAKLLFQELMSMNIAPRL 1204


>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1222

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1207 (36%), Positives = 664/1207 (55%), Gaps = 109/1207 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F   +GLV+Q LDSF+ FV   ++++V  N  ++       +G D  +  R+
Sbjct: 33   DCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHDGDVTRRY 92

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAP--------ILVNIEYVQGSH 128
             +++ GQ     P++T  DG    + P   RL ++TY+AP        IL+  E  +GS 
Sbjct: 93   -EIKFGQIYLSRPTVTEADGAVVPVFPQEARLRNLTYSAPLYIEMKKRILIGREDQEGSG 151

Query: 129  TEKTTMEKND-------VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
                 ++++D       V IG++PIMLRS  C+L+   + EL  L ECP D GGYFII G
Sbjct: 152  DMVWEVQRDDDPEDTRKVWIGKVPIMLRSTYCILHELGDKELFDLNECPYDSGGYFIING 211

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   L
Sbjct: 212  SEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSQERSL 271

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLD 284
             N       ++K  IPI VV +A+G+ SD+++++ +    +D +   +L P I+E     
Sbjct: 272  GNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDE--GFV 329

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+Y+  +   +T G     R   A  IL+   L +V +   +   K ++   M
Sbjct: 330  IQDREIALDYIGNR--GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYM 387

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +     
Sbjct: 388  IHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET--- 444

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F++S  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R 
Sbjct: 445  HKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRC 504

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I   
Sbjct: 505  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFL 564

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               G+E LE    E  H       +F NG+ +G HR P      +RKLRR   I   VSV
Sbjct: 565  EEWGLESLE----ENAHASTPCTKVFVNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSV 620

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV------RSFDDFLREG 636
              + ++R + + +D GRVCRPL I +     I++ H++ L+          ++D  L++G
Sbjct: 621  VRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRAKDDPTFNYNWDSLLKDG 680

Query: 637  LIEYLDVNEENNALIALYEGD-----------------------------ATPDTTHIEI 667
            +IE LD  EE   +I +   D                             +    TH EI
Sbjct: 681  VIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEEEDPSARLKAPTSAHTWTHCEI 740

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL
Sbjct: 741  HPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPL 800

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + 
Sbjct: 801  ATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLE 860

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +K      +   +P R      RM+   +       L+DDGL APG  +   D+ I K +
Sbjct: 861  KKSGVQQLEEFEKPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTNVNGEDIIIGKTA 913

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P+      +    +T ++ R      K    E  +VD+V + ++  G   +K  +R TR 
Sbjct: 914  PIPPDSEELGQRTRTHTK-RDVSTPLKST--EQGIVDQVLITTNAEGQKFVKIRVRSTRI 970

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K
Sbjct: 971  PQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSK 1030

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G     + F +      TVES+S+ L + G+   G +++Y G TG  LQA +++G
Sbjct: 1031 LATLIGNEGDATPFTDL-----TVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLG 1085

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + 
Sbjct: 1086 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLK 1145

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERL  +SD + + VC +CGL    N K +   C  CKN    S + +PYA KLL QELQS
Sbjct: 1146 ERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQIYIPYAAKLLFQELQS 1205

Query: 1148 MNIVPRL 1154
            MNI  RL
Sbjct: 1206 MNIAARL 1212


>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
            disseminatus]
          Length = 1241

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1207 (35%), Positives = 666/1207 (55%), Gaps = 108/1207 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F   +GLV+Q LDSF+ FV   ++++V  N  ++       +G D  +  R+
Sbjct: 51   DCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHDTDMTRRY 110

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY------------- 123
             +++ GQ     P++T  DG    L P   RL ++TY++P+ V ++              
Sbjct: 111  -EIKFGQIYLSRPTVTEADGSVFPLFPQEARLRNLTYSSPLYVEMKKRVLIGREDPDGVP 169

Query: 124  --VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
              +Q    ++ T E   + IG++PIMLRS  C+L+   + EL  L ECP D GGYFII G
Sbjct: 170  GDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYDSGGYFIING 229

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   +
Sbjct: 230  SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSM 289

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDI 285
             N       ++K  IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I
Sbjct: 290  GNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVI 348

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E AL+++  +   +T G     R   A  IL+   L ++ +   +   K ++   M+
Sbjct: 349  QDREVALDFIGNR--GTTTGLSRERRIRYAQEILQKEMLPHISMAEGSESKKAYFFGYMI 406

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +      
Sbjct: 407  HRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVET---H 463

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
              F+L+  + + +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +
Sbjct: 464  KEFNLTLAVKQQTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCN 523

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I    
Sbjct: 524  TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLE 583

Query: 525  CLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
              G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I   VSV 
Sbjct: 584  EWGLESLE----ENAHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 639

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLREGL 637
             + ++R + + +D GRVCRPL I +     +++ H+  L DGV        +++ ++ G+
Sbjct: 640  RDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIGWLNDGVDDQGEPYKWENLIKSGV 699

Query: 638  IEYLDVNEENNALIALY-----------EGDATPDT-------------------THIEI 667
            IE LD  EE   +I++            EG+ TP+                    TH EI
Sbjct: 700  IELLDAEEEETVMISMTPEDLDISRRQAEGEETPENDAEFDPAARLKAGTHAHTWTHCEI 759

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL
Sbjct: 760  HPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPL 819

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y  + 
Sbjct: 820  ATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLE 879

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +K      +   +P R      RM+   +  +     +DDG  APG  +   D+ I K +
Sbjct: 880  KKSGALQLEEFEKPTRDT--TLRMKHGTYDKI-----EDDGFIAPGTNVTGEDIIIGKTA 932

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P+      +    +  +R R      K    E  +VD+V + ++  G   +K  +R TR 
Sbjct: 933  PIPPDSEELGQRTRAHTR-RDVSTPLKST--ENGIVDQVLITTNAEGQKFVKVRVRSTRI 989

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  K
Sbjct: 990  PQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIGHLVECLLSK 1049

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G     + F +      TVE++S  L + G+   G +++Y G TG  LQA +++G
Sbjct: 1050 VATLIGNEGDATPFTDL-----TVEAVSNFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLG 1104

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + 
Sbjct: 1105 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1164

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERL  +SD + + VC +CGL    N K ++  C  CKN    S + +PYA KLL QELQS
Sbjct: 1165 ERLFEASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQS 1224

Query: 1148 MNIVPRL 1154
            MNI  RL
Sbjct: 1225 MNIAARL 1231


>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
          Length = 1124

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1150 (36%), Positives = 648/1150 (56%), Gaps = 56/1150 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            ++ ++++++  + K +GLV+QHLDS+N FV   +++I+     I + I P + +R   +R
Sbjct: 6    TIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI-PGLKVRLGKIR 64

Query: 87   IGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            IG+P +      E+ ++P   RL ++TYAAP+ + +  V+ +       E  +V IG +P
Sbjct: 65   IGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLP 120

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S    +      +L  +GE P DPGGYFI+ G+E+V++ QE L+ NRV++DT K G
Sbjct: 121  IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG 180

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +    I+ ++ G  ++       KIP +++M+A+G+ +D+++V 
Sbjct: 181  SNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVY 240

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     L PS+E+ ++  I   + AL+++  +V     G    +R  +A  I+  
Sbjct: 241  AVSLDPEVQNELFPSLEQASS--IANVDDALDFIGSRV---AIGQKRENRIEKAQQIIDK 295

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++     + + K +Y+A  + +++E  L +   DDKD+  NKRL L+G L + LF 
Sbjct: 296  YFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFR 355

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  +  L   +  D +T  +   L+TGN+        R
Sbjct: 356  VAFKAFVKDLTYQLE---KSKVRGRKLALKALVRPDIVTERIRHALATGNW-----VGGR 407

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 408  TGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 467

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL---SGEELHNPNSFL----VIFNGLIL 554
            KNLALM  +     E  +    Y +GV  +E +     E   + N +L    VI NG ++
Sbjct: 468  KNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLI 527

Query: 555  GKHRRPKCFADVMRKLRRAGKI------GEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
            G ++     A+ +R+ RR G+I      G  V+ F+NE    V++  D GRV RPL+I  
Sbjct: 528  GYYQDGGELANKIRERRRKGEISDEVNVGHIVTDFINE----VHVNCDSGRVRRPLIIVS 583

Query: 609  KGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIE 668
             G   +    +++L  G  +FDD +R+G IEYLD  EE NA +AL   D TPD TH+EI 
Sbjct: 584  NGNPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIW 643

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
               ILG+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQRPL+
Sbjct: 644  SPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLV 703

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TR ++++GY    AG NA +AVMS++GY++ED+I+MN+SS++RG  R    + Y+    
Sbjct: 704  QTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEV 763

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            KY     D+I+ P+    G       +       +L+D+G+ +P   +K  DV I K SP
Sbjct: 764  KYPGGQEDKIVMPEAGVRG-------YKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSP 816

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
                      + +   R  S    +    GE  +VD V +     G+  +K  +R  R P
Sbjct: 817  PRFLQEFKELSPEQAKRDTSIVTRH----GEMGIVDLVLITETAEGNKLVKVRVRDLRIP 872

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
             +GDKF+SRHGQKGV G ++ Q D P++ +G+ PD+I+NPH  PSRMT+G+++E + GK 
Sbjct: 873  TIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKY 932

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                G     + F     +   +E +   ++++G+  +  +++Y G TG  +++ I+ G 
Sbjct: 933  AALSGNIVDATPF-----YKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGV 987

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
            +YYQKL HMV DK+HAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +ML+ +
Sbjct: 988  VYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKD 1047

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL+ +SD   + VC  CG +G+Y+      +C    +  N+  + + YA KLLIQEL SM
Sbjct: 1048 RLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSM 1107

Query: 1149 NIVPRLKLAE 1158
             I PRL L +
Sbjct: 1108 IISPRLVLED 1117


>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1184

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1205 (35%), Positives = 668/1205 (55%), Gaps = 107/1205 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF---------- 79
            D + ++  + + +GLV+Q LDSF+ FV   +++IV +   +V   +P             
Sbjct: 10   DAWTVISSYFEEKGLVRQQLDSFDEFVTNTMQEIVDSQPDLVLTAEPQYLPGQRSEDLDK 69

Query: 80   ---LRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQ---GSHTEKT 132
               + F  + + +P+ T D G +  L P+  RL ++TY++ +  ++   +    S  E+T
Sbjct: 70   RYVVSFGQLSLSKPTFTEDTGETRPLYPNQARLRNLTYSSALYCDVTVTEVNLESGKEET 129

Query: 133  TMEKN-DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            +      V +GRIPIML+S  C LY  +  +LA LGECP D GGYF+I G+EKV++ QE+
Sbjct: 130  SQHPPIRVFLGRIPIMLKSQFCHLYNLEPWDLAELGECPYDQGGYFVINGSEKVIIAQER 189

Query: 192  LSKNRVII----DTDKKGNINASVTSSTETVKSKTVIQME--KGKMYLLLNQFVK----- 240
            ++ N V +       K   +    ++     +  +++Q++  +G    +  Q+++     
Sbjct: 190  MTSNHVFVFKRSQPSKYSYVAECRSAPDSGNRPPSLLQVKLLRGGAKGISGQYIRVSMPY 249

Query: 241  ---KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEY 294
                IP+++V +A+G E+D+E++  +    +D      L+PSIEE A +  +    AL+Y
Sbjct: 250  IKQDIPVIIVFRALGFENDREIMSHICYNFQDEELMTFLMPSIEEAAVIQDHL--VALDY 307

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            + GK + +T     + R   A  +L+  FL ++ +       K +++  ++ R++   L 
Sbjct: 308  I-GK-RGNTIAVTKDKRIQYAREVLQKEFLPHIGIGEGCELKKGYFLGYVINRLLSTALG 365

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
            +  +DD+D+ GNKRL+L+G L+  +F    + ++ E   T  I+          +L   +
Sbjct: 366  RREVDDRDHYGNKRLDLAGPLLGEMFRHHLRRVLKE---TRSILQRNLDTGKGLNLQGAV 422

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
               +IT GL+  L+TGN+        R G++QVL RL++  TL H+ R++    +  K++
Sbjct: 423  KSRTITNGLKNALATGNW-----IRGRTGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA 477

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  + WGM+CP +TPEG+ACGL KNLALM +++      P+I       +E+L  +
Sbjct: 478  KPRQLHNTHWGMICPAETPEGQACGLTKNLALMAYISVGTPSAPVIEFLEEWSMENLLEI 537

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            S   +  P +  V  NG  +G HR P+     +++LRR G I E VS+ ++ + + + I 
Sbjct: 538  SPSVV--PLATKVFVNGAWVGIHREPEDLVRTLKELRRQGTIKEEVSIVMDHQFKELRIY 595

Query: 595  SDGGRVCRPLVIADKG---IS-------------------RIKEHHMKEL--LDGVR-SF 629
            +D GRVCRPL I +     IS                    IK+ H+  L   DG R SF
Sbjct: 596  TDPGRVCRPLFIVNPPPPPISFEDANEDTNVFGQRPPQTLAIKKSHIDMLKRTDGDRCSF 655

Query: 630  DDFLREGLIEYLDVNEENNALIA-----LYEGDATPDTTHIEIEPFTILGVIAGLIPYPH 684
               +  GLIEY+DVNEE   +IA     L E D+    TH EI P  ILGV   +IP+P 
Sbjct: 656  SFLVENGLIEYVDVNEEETTMIAMNIKDLIETDSEVVYTHCEIHPSMILGVCGSIIPFPD 715

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG  A N   RMD++ ++L YPQ+PL+TTR +E + +  L AG
Sbjct: 716  HNQSPRNTYQAAMGKQAMGIYATNYQLRMDTMAHVLYYPQKPLVTTRAMEHLQFRSLPAG 775

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD-R 803
             NA VA+  YSG++ ED++++++S++DRG  R +  + +    ++      +    P+ +
Sbjct: 776  INAIVAIACYSGFNQEDSVILSQSAVDRGLFRSLFFRTFRDEERRRLGGAQETFEVPNPK 835

Query: 804  TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 863
               G +R             L++DGL A G  +  +D+ + K  PL      M+  G+ D
Sbjct: 836  ECIGTKRGAYDK--------LEEDGLVAEGTRVSGDDILVGKTCPL----GRMAANGEED 883

Query: 864  SRYRSARQTYKGP----------DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
              +++  QT  G             ET VVD+V L +++ G   +K  IR  R P++GDK
Sbjct: 884  ETWKAYSQTLGGKTKKDASTSMRSTETGVVDKVMLAANEAGARFVKVRIRSVRVPQVGDK 943

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            FSSRHGQKG  G    QED PF+  GI PD+I+NPH  PSRMT+G++IE L GK     G
Sbjct: 944  FSSRHGQKGTVGITYGQEDLPFNVDGIVPDIIINPHAIPSRMTIGQLIECLQGKVSAIAG 1003

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
            R    + F        TV+ IS+ L   G+   G +++Y+G TG PL+A+IF+GP YYQ+
Sbjct: 1004 REGDATPFT-----WVTVDEISQQLKTLGYQSRGWELMYNGFTGRPLEAHIFIGPTYYQR 1058

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMV DK+H+R  GP  +LTRQP EGRAR GGLR GEMERDC+I++GA+  + ERLM  
Sbjct: 1059 LKHMVDDKIHSRARGPVQILTRQPVEGRAREGGLRFGEMERDCMISHGAAFFLKERLMDE 1118

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD + + VC +CGL+   + K     C +C+N   IS + +PYACKLL QEL +M I PR
Sbjct: 1119 SDAYRIHVCNLCGLIAIADLKRNTFECRSCRNKTEISQVFIPYACKLLFQELMAMGIAPR 1178

Query: 1154 LKLAE 1158
            +  A+
Sbjct: 1179 IVTAD 1183


>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1222

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1230 (36%), Positives = 671/1230 (54%), Gaps = 132/1230 (10%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
            AP+ +  D + ++  F + +GLV Q LDSFN F+N  I+ ++  +  ++           
Sbjct: 19   API-TAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTES 77

Query: 72   SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY------- 123
              I     + F  + + +PSMT  DGVS  + P   RL ++TYA+ + V I+        
Sbjct: 78   DNISRKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVD 137

Query: 124  VQGS-------HTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            V G          E    E+  + IGR+PIMLRS  C+L    E++L RL ECP D GGY
Sbjct: 138  VPGRDLKYEIIQEESEDSEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGY 197

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKM 231
            FII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K+
Sbjct: 198  FIINGSEKVLIAQERSAGN--IVQVFKKSAPSPISHVAEIRSALE--KGSRFISTLQVKL 253

Query: 232  Y-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSI 277
            Y             L    + +PI+++ +A+G+  D E+++ +     D +   +L P +
Sbjct: 254  YGREGSTSRTIKATLPYIKQDVPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCV 313

Query: 278  EECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPK 337
            EE     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K
Sbjct: 314  EE--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 369

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QK 393
             F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q+
Sbjct: 370  AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQR 429

Query: 394  TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLS 452
            +V+        +  F+L   +   +IT GL+  L+TGN+  ++  M  R G++QVL R +
Sbjct: 430  SVE-------EAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYT 482

Query: 453  FIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 512
            +  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++ 
Sbjct: 483  YSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV 542

Query: 513  DEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR 572
              +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    D +RKLRR
Sbjct: 543  GTDPVPIITFLNEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGIHRNPARLVDTIRKLRR 600

Query: 573  AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS-------RIKEHHMKELL-- 623
             G I   VS+  + +++ + I +D GRV RPL +  + +        ++++ H+++L+  
Sbjct: 601  KGDITAEVSIVRDIREKELKIFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHIRKLMLT 660

Query: 624  ------------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT--------- 662
                        D   ++   L EG++EY+D  EE   LIA+ + D  P+          
Sbjct: 661  EYQDIEGGFEEEDINYTWTSLLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQTADPSDE 720

Query: 663  ----------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
                            TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG   
Sbjct: 721  LDPARRIKAIHHSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 780

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN
Sbjct: 781  TNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 840

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +SS+DRG  R +  + Y    ++   S ++   +P RT     RM+   +  L     DD
Sbjct: 841  QSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTN--TLRMKHGTYDKL-----DD 893

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL APG  +  +D+ I K +P+      +   GQ  + +     +      E  +VD+V
Sbjct: 894  DGLIAPGVRVSGDDMIIGKTTPIPPDAEEL---GQRTAFHSKRDASTPLRSTENGIVDQV 950

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             + +++ G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  G+ PDLI+
Sbjct: 951  LITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLII 1010

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L  K     G     S F +      TV+ IS  L +HG+   
Sbjct: 1011 NPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVDGISRLLREHGYQSR 1065

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG
Sbjct: 1066 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGG 1125

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCK 1124
            LR GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL+     KLK     C  CK
Sbjct: 1126 LRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVA-KLKHNQFECRGCK 1184

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1185 NKIDIFQVHIPYAAKLLFQELMAMNIAPRL 1214


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1213 (35%), Positives = 661/1213 (54%), Gaps = 114/1213 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F   +GLV+Q LDSF+ FV   ++++V  N  ++           S +    
Sbjct: 35   DCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHESDVTRRY 94

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-----------EYVQG 126
             ++F  + + +P++T  DG    + P   RL ++TY+AP+ + +           +   G
Sbjct: 95   EIKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYIEMKKRVLLGREDPDSATG 154

Query: 127  SHTEKTTMEKN-----DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
                +T  + N      V IG++PIMLRS  C+L+G ++ EL  L ECP D GGYFII G
Sbjct: 155  DMVWETEHDDNPEDTRKVWIGKVPIMLRSTFCILHGLEDDELYDLNECPYDSGGYFIING 214

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   L
Sbjct: 215  SEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRSQERSL 274

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLD 284
             N       ++K  IPI VV +A+G+ SD+++++ +    +D +   +L P I+E     
Sbjct: 275  GNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDE--GFV 332

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+Y+  +   +T G     R   A  IL+   L +V +   +   K ++   M
Sbjct: 333  IQDREIALDYIGNR--GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYM 390

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +     
Sbjct: 391  IHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET--- 447

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F L   +  ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R 
Sbjct: 448  HKEFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRC 507

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I   
Sbjct: 508  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFL 567

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I   VSV
Sbjct: 568  EEWGLESLE----ENAHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSV 623

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS-----------FDD 631
              + ++R + + +D GRVCRPL I +     +++ H++ L  G              +D+
Sbjct: 624  VRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLARGKEEPEKDATKFEYKWDN 683

Query: 632  FLREGLIEYLDVNEENNALIAL-----------------YEGDATPD------------- 661
             +++G+IE LD  EE   +I +                 +E D   D             
Sbjct: 684  LIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPTNAHT 743

Query: 662  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721
             TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L 
Sbjct: 744  WTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILY 803

Query: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
            YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  +
Sbjct: 804  YPQKPLATTRSMEYLKFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYR 863

Query: 782  KYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV 841
             Y  + +K      +   +P R      RM+   +  L     +DDGL APG  +   D+
Sbjct: 864  SYMDLEKKSGIQQLEEFEKPTRDS--TLRMKHGTYDKL-----EDDGLIAPGTNVNGEDI 916

Query: 842  YINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
             I K +P+      +    +T ++ R      K    E  ++D+V + ++  G   +K  
Sbjct: 917  IIGKTAPIPPDSEELGQRTRTHTK-RDVSTPLKST--EQGIIDQVLITTNAEGQKFVKIR 973

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++
Sbjct: 974  VRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLV 1033

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            E L  K     G     + F +      TVES+S+ L + G+   G +++Y G TG  +Q
Sbjct: 1034 ECLLSKVATLIGNEGDATPFTDL-----TVESVSQFLRQKGYQSRGLEIMYHGHTGRKIQ 1088

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            A +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G
Sbjct: 1089 AQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHG 1148

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             +  + ERL  +SD + + VC +CGL    N K +   C  C+N    S + +PYA KLL
Sbjct: 1149 VAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACRNKTACSQIYIPYAAKLL 1208

Query: 1142 IQELQSMNIVPRL 1154
             QELQSMNI  RL
Sbjct: 1209 FQELQSMNIAARL 1221


>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
          Length = 1221

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/1227 (36%), Positives = 667/1227 (54%), Gaps = 132/1227 (10%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGID 75
            S  D + ++  F + +GLV Q LDSFN F+N  I+ ++  +  ++             I 
Sbjct: 20   SAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNIS 79

Query: 76   PSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE------------ 122
                + F  + + +PSMT  DGVS  + P   RL ++TYA+ + V I+            
Sbjct: 80   RKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGR 139

Query: 123  ---YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
               Y   +   +   E N + IGR+PIMLRS  C+L    E++L RL ECP D GGYFII
Sbjct: 140  DLKYEIITEESEENEENNKIFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFII 199

Query: 180  KGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY-- 232
             G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K+Y  
Sbjct: 200  NGSEKVLIAQERSAGN--IVQVFKKSAPSPISHIAEIRSALE--KGSRFISTLQVKLYGR 255

Query: 233  ---------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEEC 280
                       L    + IPI+++ +A+G+  D E+++ +     D +   +L P +EE 
Sbjct: 256  EGSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEE- 314

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
                I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K F+
Sbjct: 315  -GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFF 371

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVD 396
            +  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q++V+
Sbjct: 372  LGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVE 431

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIG 455
                    +  F+L   +   +IT GL+  L+TGN+  ++  M  R G++QVL R ++  
Sbjct: 432  -------EAKDFNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSS 484

Query: 456  TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
            TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   +
Sbjct: 485  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 544

Query: 516  EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK 575
              P+I+     G+E LE     +  +P++  V  NG+  G HR P    D +RKLRR G 
Sbjct: 545  PLPIITFLNEWGMEPLEDYIPHQ--SPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGD 602

Query: 576  IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL-----D 624
            I   VS+  + +++ + I +D GRV RPL I D+         ++K+ H+++L+     D
Sbjct: 603  ITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQD 662

Query: 625  GVRSFDD----------FLREGLIEYLDVNEENNALIALYEGDATPDT------------ 662
                FDD           L EGL+EY+D  EE   LIA+   D  P              
Sbjct: 663  IEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDP 722

Query: 663  -------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
                         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 723  ARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNY 782

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+SS
Sbjct: 783  NVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSS 842

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            +DRG  R +  + Y    ++   S ++   +P RT     RM+   +  L     DDDGL
Sbjct: 843  IDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTN--TLRMKHGTYDKL-----DDDGL 895

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             APG  +  +D+ I K +P+      +   GQ  + +     +      E  +VD+V + 
Sbjct: 896  IAPGVRVSGDDMIIGKTTPIPPDAEEL---GQRTAFHSKRDASTPLRSTENGIVDQVLIT 952

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
            +++ G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  G+ PDLI+NPH
Sbjct: 953  TNQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPH 1012

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMTV  +IE L  K     G     S F +      TV+ IS  L +HG+   G +
Sbjct: 1013 AIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVDGISRLLREHGYQSRGFE 1067

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR 
Sbjct: 1068 VMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRF 1127

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGD 1127
            GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL+     KLK     C +CKN  
Sbjct: 1128 GEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVA-KLKHNQFECRSCKNKI 1186

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
            +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1187 DIYQVHIPYAAKLLFQELMAMNIAPRL 1213


>gi|46669|emb|CAA32924.1| RNA polymerase subunit B (AA 1-1126) [Sulfolobus acidocaldarius]
          Length = 1126

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1147 (36%), Positives = 649/1147 (56%), Gaps = 56/1147 (4%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            ++ +   F K RGLV+QHLDSFN F+   +++++     IV+ + P + ++   +R  +P
Sbjct: 7    RWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEV-PGLKIKLGKIRYEKP 65

Query: 91   SM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            S+  T  G   ++ P   RL ++TY++PI +++  V+ +       E  ++ IG +PIML
Sbjct: 66   SIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENN----IEGEPIEIYIGDLPIML 121

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG-NI 207
            +S           +L  +GE P DPGGYFI+ G+EK+++ QE L+ NRV++D  K G NI
Sbjct: 122  KSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKMIIAQEDLATNRVLVDYGKSGSNI 181

Query: 208  N--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A VTSS    + + +I+ ++   + +       +IP  ++M+A+G  +D+++V  V 
Sbjct: 182  THVAKVTSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVS 241

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             DP+    LLPS+E+ ++  I + E+AL+++  +V     G    +R  +A  ++   FL
Sbjct: 242  LDPQIQNELLPSLEQASS--ITSAEEALDFIGNRV---AIGQKRENRIQKAEQVIDKYFL 296

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++     + + K +Y+A  + +++E  L +   DDKD+  NKR+ L+G L + LF   F
Sbjct: 297  PHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAF 356

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGM 444
            K  + ++   ++       R  R  L+  +  D IT  +   L+TGN+        R G+
Sbjct: 357  KAFVKDLVYQLE---KSKVRGRRLSLTALVRADIITERIRHALATGNW-----VGGRTGV 408

Query: 445  TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
            +Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLVKNL
Sbjct: 409  SQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNL 468

Query: 505  ALMTHVTTDEEEGPLISLCYCLGV---EDLELLSGEELHNPNSFL----VIFNGLILGKH 557
            AL+  V+    E  +  + Y LGV   ED+     E+  +   ++    V  NG +LG +
Sbjct: 469  ALLAQVSVGINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYY 528

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSV------FVNEKQRCVYIASDGGRVCRPLVIADKGI 611
               K  A  +R+ RR GK+ + V+V      ++NE    V+I  D GRV RPL+I + G 
Sbjct: 529  EDGKELAKKIRESRRQGKLSDEVNVAYIATDYLNE----VHINCDAGRVRRPLIIVNNGT 584

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
              +    +K+L +G  +FDD +++G IE++D  EE NA +AL   D TPD TH+EI P  
Sbjct: 585  PLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSA 644

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG+IA +IPYP HNQSPRNTYQ AM KQ++G  A N   R D+  +LL YPQ PL+ TR
Sbjct: 645  ILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTR 704

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
             + ++GY+   AG NA +A+MSY+GY++ED+I+MNKSS++RG  R    + Y+    KY 
Sbjct: 705  MLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYP 764

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
                D+I+ P+    G       +       +L+D+G+ +P   +K  DV I K SP   
Sbjct: 765  GGQEDKIVTPEAGVKG-------YKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRF 817

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
                   + +   R  S    +    GE  +VD V +     G+  +K  +R  R PE+G
Sbjct: 818  LQEFKELSPEQAKRDTSIVTRH----GENGIVDLVLITETLEGNKLVKVRVRDLRIPEIG 873

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF++RHGQKGV G ++ Q D P++ +GI PD+I+NPH  PSRMT+G+++E +GGK    
Sbjct: 874  DKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAAL 933

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G+    + F E       ++ + + ++K G   +  +++Y G TG  L++ I  G +YY
Sbjct: 934  SGKPVDATPFLE----TPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYY 989

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKL HMV DKMHAR  GP  +LTRQPTEGRAR GGLR GEMERDCLI +G +MLI +RL+
Sbjct: 990  QKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLL 1049

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
             +S    V +C  CG +G+Y+      +C    +   +  + + YA KLLIQEL SM I 
Sbjct: 1050 DNSYKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVIS 1109

Query: 1152 PRLKLAE 1158
            PRL L E
Sbjct: 1110 PRLILGE 1116


>gi|389860840|ref|YP_006363080.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
 gi|388525744|gb|AFK50942.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
          Length = 1151

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1184 (38%), Positives = 666/1184 (56%), Gaps = 94/1184 (7%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S+ D + L+  F + +GLV+QHLDS+N FV   + +I+R    I   I   + L  KD +
Sbjct: 6    SIEDLWTLMKAFFEEKGLVRQHLDSYNRFVRELLPEIMREYREI--PITADLKLVIKDYK 63

Query: 87   IGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV--QGSHTEKTTMEKNDVVIGR 143
            IG+P    ++GV  ++ P  CRL ++TYAAP+   +  V  +GSH E+      D+ +  
Sbjct: 64   IGKPVWKNIEGVESEVTPMECRLRNLTYAAPVTAKVALVDREGSHKEQ------DIKLMD 117

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +P+ML+S    L    + EL ++GE P DPGGYFII G EKVL+ QE L+ N +I+D   
Sbjct: 118  LPVMLKSELDPLSKLSKEELKQVGEDPDDPGGYFIINGAEKVLIAQEDLASNNIIVDISP 177

Query: 204  KGNIN---ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            +G+     A V S+ +  +S+ VI+  K  ++   N   +KIP  ++M A+G+ ++ E++
Sbjct: 178  EGSSTTHVAKVVSTAKGRRSQLVIERRKDGVFYA-NFQGRKIPAPILMIALGLATEYELM 236

Query: 261  QMVGRDPRYSALLLPSIEECAN----LDI------------------YTQEKALEYLEGK 298
              V  DP     LLPSI E  +    L+I                     E+AL+++   
Sbjct: 237  NAVSFDPDVQIQLLPSISEVQSVLPRLEIPPGVSEEEIRRLEEEYRKKVVEEALDFIGA- 295

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANV---PVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
              R   G P  +R  RA   L +  L ++   P  +   + K  ++  M+ +++E  L +
Sbjct: 296  --RMAVGRPREERVRRAERALDEYLLPHIGTDPSPSTRLK-KALFIGQMINKIIEVYLGR 352

Query: 356  DAMDDKDYVGNKRLELSGQLV-SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
               DDKD+  NKRL+L+G L+ +LL   +  + I EV+ +++   SK     + DL   I
Sbjct: 353  RQPDDKDHYRNKRLKLAGDLLATLLRHAIVVSFIREVKTSIEKTYSK---YRKVDLKMVI 409

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
              + IT  +   ++TGN+        R G++Q+L R + + TL H+ RV     +++   
Sbjct: 410  KPNIITDRISHAMATGNW-----PGGRTGVSQILDRTNMLSTLSHLRRVVSPLARAQPHF 464

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL--- 531
              R L  + WG +CP +TPEG   GLVKNLALM H++   +E  +      LGV+ L   
Sbjct: 465  EARELHFTSWGRMCPFETPEGANIGLVKNLALMAHISVGFDEKEVEQTLVKLGVKTLPQI 524

Query: 532  -----------ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                       E  SG   ++  S  V  NG ++G +      A  +R+LRR GKI   V
Sbjct: 525  LDELKESIKRGEAYSGTAEYSSWS-KVYLNGRLIGLYPDGGELARKIRELRRQGKISSEV 583

Query: 581  SV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 638
            +V  F  E    VY+  D GR+ RPL++ + G  ++K  H+K+L +G   F+D ++ G+I
Sbjct: 584  NVAYFRTEYLNEVYVNCDAGRIRRPLLVVENGELKLKPEHIKQLKNGNLKFEDLVKRGVI 643

Query: 639  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
            EYLD +EE NA IAL   + + + TH+EI   +ILG++A +IPYP HNQSPRN Y+ AMG
Sbjct: 644  EYLDPDEEENAYIALNPDELSIEHTHLEIWVPSILGIVASIIPYPEHNQSPRNIYEAAMG 703

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQ++G  A N   RMDS  + L YPQ+PL  T+ +E++GY++  AGQN  VAV++Y+GY+
Sbjct: 704  KQSLGLYAANFQRRMDSRGHFLHYPQKPLAQTKPLEVIGYNEKPAGQNMVVAVLTYTGYN 763

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSN 818
            IEDA++MNKSS++RG GR    + Y+ +  KY     D+I  P     G +  +      
Sbjct: 764  IEDAVIMNKSSIERGLGRSTFFRVYSTVEYKYPGGQEDKISVPPSDIRGYKGPRAYEK-- 821

Query: 819  LLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP-TGQTDSRYRSA---RQTYK 874
                 LD+DG+ AP   +   DV I K SP  +R  I    TG    +  ++   R   K
Sbjct: 822  -----LDEDGIVAPETYVVGGDVLIGKVSP--SRFMITQELTGSEQVKQDTSVVMRHEEK 874

Query: 875  GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 934
            G      +VD V + +D +G+  +K  +R  R PELGDKF+SRHGQKGV G I+ Q D P
Sbjct: 875  G------IVDVVMITTDSDGNKLVKVRVRDLRIPELGDKFASRHGQKGVVGLIIPQYDMP 928

Query: 935  FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 994
            F+E GI PDLI+NPH FPSRMTVG++IE + GK     GR   G+ F       +  E +
Sbjct: 929  FTEDGITPDLIINPHAFPSRMTVGQLIESIAGKVAALEGRLVDGTPF-----FKEDPEKL 983

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
               L +HG+   G++ +Y G TG  ++A +F+G +YYQKL HMV DK+HAR  GP  +LT
Sbjct: 984  MVVLKRHGYPETGEEAMYDGRTGELMRAPVFIGIVYYQKLHHMVSDKIHARARGPVQILT 1043

Query: 1055 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHK 1114
            RQPTEGRAR GGLR GEME DCL+ +GA+ L+ E ++  SD   + VC +CG +GYY+  
Sbjct: 1044 RQPTEGRARAGGLRWGEMEVDCLVGHGAASLLKETMIDRSDKAVIYVCELCGHIGYYDRI 1103

Query: 1115 LKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
                +C   K    +  +++ Y+ KLLIQEL SM I+PRLKL +
Sbjct: 1104 RDRYVCPVHKEKGVLKPVEVSYSFKLLIQELMSMAIMPRLKLED 1147


>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
 gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
          Length = 1168

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1175 (36%), Positives = 659/1175 (56%), Gaps = 73/1175 (6%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S  D++ ++  F    GL KQH+DS+N F+   + +I+++   I  G    + +    ++
Sbjct: 10   SADDRWAIMRAFFDEYGLTKQHIDSYNRFLERDLLEIIKSYSVIDVGGQYKLEIVLDGIK 69

Query: 87   IG----QPSMTVDGV-SEK--LNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
             G     P M  +G  SE+  + P  CR+ D+TY API V +  ++G       +++ +V
Sbjct: 70   SGLELLGPPMVREGDGSERTDVTPLECRIRDLTYEAPIRVRVRLIEG-----VVVDEQEV 124

Query: 140  VIGRIPIMLRS-----CRCVLYGKDEAE----LARLGECPLDPGGYFIIKGTEKVLLIQE 190
            V+G +PIMLRS      RC     +  E    L + GE P DPGGYFII G+E+V++IQE
Sbjct: 125  VLGMLPIMLRSKADPLARCFYERGNVKECYELLIQKGEDPRDPGGYFIINGSERVVVIQE 184

Query: 191  QLSKNRVIIDTDKKGN---INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMV 246
            +   NRV++D  ++       A V S    ++ + ++ M K G +++ + + + KIP ++
Sbjct: 185  EQVVNRVLVDKGRQQTGVKFTAKVISFHAGLRYQLILDMHKDGTLHVSMTRAITKIPFVI 244

Query: 247  VMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +++A+G+E D+++V  +  DP    +L PS+E+     I TQ++ALE++ G   R   G 
Sbjct: 245  LLRALGLERDRDIVLAISTDPEIQNMLYPSLEQARA--IATQKEALEFI-GARFREGIGK 301

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
            P   R   A   L +  L ++     +   K  ++A M R+++E    +   DDKD+  N
Sbjct: 302  PSEQRIRVAEHALDNFLLPHLGTRPEDRLRKALFLADMARKLLELAAGRRQPDDKDHYAN 361

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            KRL L+G L++++F    +++  +++  ++      +R  R      I RD IT  L   
Sbjct: 362  KRLLLAGDLIAIVFRTAMRSLYQDIRSQLE---RAKARGKRISPRTVIRRDIITNKLHDA 418

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            L+TGN+        R G++Q+L R +++  L H+ RV     +S+     R L  + WG 
Sbjct: 419  LATGNW-----PGQRTGVSQLLDRTNWLSMLSHLRRVVSPLSRSQPHFEARDLHGTHWGR 473

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL------- 539
            +CP +TPEG  CGLVKNLALM +++   +E  +  +      E+ E++  EEL       
Sbjct: 474  ICPFETPEGPNCGLVKNLALMAYISAGVDEKEVEKVIR----ENFEIIDAEELLRKLIET 529

Query: 540  HNPNSFL------------VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
             + + FL            V  NG ++G +   +  A  +R+LRR GK+   V+V     
Sbjct: 530  EDVSEFLPYYMEVTSKYTRVYINGRLIGYYPDGEKLAQEIRRLRREGKLHYEVNVAYYRD 589

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN 647
               +Y+ +D GRV RPL + + G  ++K  H++++  G   F D L+ G++E LD  EE 
Sbjct: 590  VNELYVNTDPGRVLRPLFVVENGKLKLKPEHIEKIKKGEWKFTDLLKHGIVELLDAEEEE 649

Query: 648  NALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
            NA +AL   D TP+ TH+EI    I GV A  IPY  HNQSPRNTYQ AM KQA+G  A 
Sbjct: 650  NAYVALNPEDITPEHTHMEIWTPAIFGVTASTIPYAEHNQSPRNTYQAAMAKQALGLYAA 709

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   R D+  +LL YP++PL+ TR ++++G++   AGQN  VAV+S++GY+IEDAI+MNK
Sbjct: 710  NFQIRADTRGHLLHYPEKPLVQTRALDIIGFNNRPAGQNMVVAVLSFTGYNIEDAIIMNK 769

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDR---ILRPDRTGPGAERMQVVHHSN--LLLL 822
            SS+DRG  R    + Y    +KY+    D    I  P R  PG   ++ +  +   +   
Sbjct: 770  SSIDRGLARSTFFRLYATEERKYSGGQKDLLGCIDDPQRR-PGCIDIKSIIDAKPPIAYR 828

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LD DG+ +P   ++  +V I K +P +           T+ R   +     G  G    
Sbjct: 829  KLDIDGIVSPEVEVESGEVLIGKTAPPKFSEEFREIAVSTERRRDESVSVRHGERG---T 885

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD V +     G   +K  +R  R PE GDKF+SRHGQKGV G +V Q D PF+E GI P
Sbjct: 886  VDTVFITETNEGFKLVKVRVRDLRIPEFGDKFASRHGQKGVIGFLVPQYDMPFTEDGITP 945

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            DLI+NPH FPSRMT+G+++E + GK      R    + F       + VE++   L+K+G
Sbjct: 946  DLIINPHAFPSRMTLGQLLETIAGKVAALSARLIDATPF-----FKEPVENLQLELLKYG 1000

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            FS +G +++Y G TG  L+  +F+G +YYQKL HMV DK+HAR +G   +LTRQPTEGRA
Sbjct: 1001 FSPDGTEIMYDGRTGEMLRHPVFIGIVYYQKLHHMVADKIHARATGQTQLLTRQPTEGRA 1060

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICST 1122
            R GGLR GEMERDCL+ +GA+ML+ ER++ SSD + + VC +CG + +++   +A +C  
Sbjct: 1061 RGGGLRFGEMERDCLVGHGAAMLLRERMLESSDKYVMYVCELCGHIAWFDRNRRAFVCPI 1120

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             K    IS + +PYA KLL+QEL SM I+PRL+LA
Sbjct: 1121 HKEEGKISIVVVPYAFKLLLQELMSMGIMPRLRLA 1155


>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1172

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1188 (37%), Positives = 665/1188 (55%), Gaps = 97/1188 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP------------- 76
            D + ++  F + +GL +Q LDSFN F+   +++IV  ++     ++P             
Sbjct: 17   DAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIV-VDEMSSFELEPEQQHVPGEEGEGG 75

Query: 77   ---SIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT--- 129
               +  + FK + + +P +T  DG++  L P   RL ++TY+AP+ V++E    + T   
Sbjct: 76   EKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVTTVTLDS 135

Query: 130  EKTT-MEK-NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
            +KT  +EK N V IG++PIMLRS  C L+   + EL  LGECP D GGYFII G+EKVL+
Sbjct: 136  QKTEEVEKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVLI 195

Query: 188  IQEQLSKNRVIIDTDKKGN---INASVTSSTET---VKSKTV--------IQMEKGKMYL 233
             QE++S N V +   ++ +     A   SS E+     S  V         +ME G + +
Sbjct: 196  AQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESGARAASACVARMLHSPGTKMEPGCIRV 255

Query: 234  LLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEK 290
             L      IP+ VV +A+G  +D+++++ +     D     LL PSIEE   L I +++ 
Sbjct: 256  TLPYIRTDIPLFVVFRALGFVADKDILEHIVYDFNDHDAMELLRPSIEEA--LPIQSKKV 313

Query: 291  ALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVE 350
            AL+Y+ GK + S  G     R   A  IL+   L +V V       K +Y+  ++ R++ 
Sbjct: 314  ALDYI-GK-RGSAVGVSREKRIKYAQDILQKELLPHVGVDEECETRKAYYLGYIVHRLLL 371

Query: 351  AMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSS 406
              L +   DD+D+ GNKR++L+G L+++LF  LF+ +  +V    Q+ VD          
Sbjct: 372  CALGRRNEDDRDHFGNKRMDLAGPLIAILFRQLFRKLTKDVRLYCQRCVD-------SGK 424

Query: 407  RFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQ 466
               L+  +   +IT GL+ +L+TGN+  +  +  R G++QVL RLSF  TL H+ R++  
Sbjct: 425  EIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRRLNSP 484

Query: 467  FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL 526
              +  K++ PR L  S WGM+CP +TPEG+ACGLVKNL+LM  V+      P++      
Sbjct: 485  IGREGKLAKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMALVSVGSPSSPVLEFLEEW 544

Query: 527  GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE 586
             +E+LE +S   + +     V  NG+ +G HR P      +R+LRR   I   V +  + 
Sbjct: 545  TMENLEEISPSVISHATKIFV--NGVWVGVHRDPADLVRTLRELRRKVDITTEVGIVHDI 602

Query: 587  KQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKEL----LDGVRSFDDFLREGLIEYLD 642
            + + + + +D GR  RPL I +    +IK+ +++ L    + G  +++D +  G IEY+D
Sbjct: 603  RLQELRLYTDYGRCIRPLFIVEDQRMKIKKRNIEMLQEKDITGF-TWNDLVSSGCIEYVD 661

Query: 643  VNEENNALIALYEGD-------ATPDT------THIEIEPFTILGVIAGLIPYPHHNQSP 689
              EE   +I++   D       A  +T      TH EI P  ILG+   +IP+P HNQSP
Sbjct: 662  TEEEETTMISMTIEDLVQARLLANNETSVQHMYTHCEIHPSMILGICGSIIPFPDHNQSP 721

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG N  V
Sbjct: 722  RNTYQSAMGKQAMGMYVTNFQLRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPAGVNVVV 781

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
             +M Y+GY+ ED+++MN+SS+DRG  R I  + +    +K  + T +     D   P  E
Sbjct: 782  GIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKE-----DLECPSPE 836

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
                + H     L  D DGL  PG  +   D+ I K SPL        P+  ++ R+   
Sbjct: 837  TTLGMRHGTYGKL--DKDGLICPGTRVSGEDIIIGKTSPLPDD----DPSAASN-RFTKR 889

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
              +    + ET ++D+V L ++  G   +K  +R  R P++GDKFSSRHGQKG  G    
Sbjct: 890  DCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGTIGMTYT 949

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
            QED PF+  G+ PD+I+NPH  PSRMT+G+++E L GK     G+    + F        
Sbjct: 950  QEDMPFTCEGVVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTPV----- 1004

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
            TVE+IS+ L + G+   G +++Y+G TG  L+A IF+GP YYQ+LKHMV DK+H+RG GP
Sbjct: 1005 TVENISDMLHQCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIHSRGRGP 1064

Query: 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 1109
              +LTRQP EGR+R+GGLR GEMERDC+I++GA+  + ERLM  SD + V VC+ CGL+ 
Sbjct: 1065 VQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRVHVCQTCGLIA 1124

Query: 1110 YYNHKLKAGICSTCKNGD---NISSMKLPYACKLLIQELQSMNIVPRL 1154
              N K +   C  CKN      +  + LPYACKLL QEL SM + PRL
Sbjct: 1125 VANLKNQTFEC--CKNPSERMKVVQVLLPYACKLLFQELMSMAVAPRL 1170


>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
 gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
          Length = 1196

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1173 (36%), Positives = 644/1173 (54%), Gaps = 92/1173 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI---------VSGIDPSIF--L 80
            + ++  +   +GLV+Q LDSF+ F+   +++IV  + +I          S    S+   L
Sbjct: 29   WVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDIQGETQHHSSEEQQSVRYQL 88

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKND 138
            +F  + + +P+    DG    +  +  RL ++TY+AP+ V+I + +   + E        
Sbjct: 89   KFDQIYLSKPTFWEKDGSPTPMMSNQARLRNLTYSAPLYVDITKTITKGNNEPEVKCHPK 148

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
              IG+IPIMLRS  C+L+   +  L  L ECPLD GGYFII G+EKVL+ QE+++ N V 
Sbjct: 149  TFIGKIPIMLRSTYCLLHNMADHALTELNECPLDVGGYFIINGSEKVLIAQEKMASNTVY 208

Query: 199  IDTDKK------GNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKK 241
            +   K+        I +   +S+    +  V  + +G           K+   +    ++
Sbjct: 209  VFQKKESKYAYVAEIRSVTENSSRPTSTLWVSMLARGGGTSKKSVIGQKIVAAIPYVNQE 268

Query: 242  IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPIMVV +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL Y+  +
Sbjct: 269  IPIMVVFRALGFVADRDILEHIIYDFDDPELMEMVKPSLDEA--FVIQEQNVALNYIGSR 326

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
              RS  G     R   A  IL+   L +V + +     K +++  M+ R++   L +  +
Sbjct: 327  GSRS--GVTKEKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYMVHRLLLTALGRREV 384

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ GNKRL          F +L K +    QK VD           F+L   I    
Sbjct: 385  DDRDHYGNKRL----------FRNLLKEVKMYAQKFVD-------NGRDFNLELAIKTKI 427

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F+ TL H+ R++    +  K++ PR
Sbjct: 428  ITDGLRYSLATGNWGDQKKAHQSRAGVSQVLNRLTFVSTLSHLRRLNSPIGRDGKLARPR 487

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+A GLVKNLALM +++   +  P++       +E+LE +S  
Sbjct: 488  QLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVSHS 547

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK-IGEFVSVFVNEKQRCVYIASD 596
             L +     V  NG  +G HR P+     +RKLRR    I   VS+  + + R + I +D
Sbjct: 548  ALASATKIFV--NGCWVGIHRDPEQLMSTLRKLRRQMDVIVSEVSMVRDIRDREIRIYTD 605

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDG----VRSFDDFLREGLIEYLDVNEENNALIA 652
             GR+CRPL+I +     +K++H++ +       V  + D +  G++EY+D  EE   +IA
Sbjct: 606  AGRICRPLLIVENQKLVLKKNHIESMKTADDYEVFGWQDLIANGIVEYVDTLEEETVMIA 665

Query: 653  LYEGDATPDT-----------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
            +     TPD            TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 666  M-----TPDYLTAGVNYCRTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA 720

Query: 702  MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
            MG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N  VA+ SY+GY+ ED
Sbjct: 721  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINTIVAIASYTGYNQED 780

Query: 762  AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLL 821
            +I+MN+ ++DRG  R +  + Y    +   +  S+ I       P  E    +H  N + 
Sbjct: 781  SIIMNRGAIDRGLFRSVFYRSYRD-QESSGDFNSEEIFEK----PSKETCSGMH--NAMY 833

Query: 822  LILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETC 881
              LDDDGL APG  +   D+ I K + L      +   G T+ R+     +      E+ 
Sbjct: 834  DKLDDDGLVAPGTRVSGGDIVIGKTALLPEDADAL---GDTNKRFVKRDASTGLRSSESG 890

Query: 882  VVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 941
            +VD+V L   + G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI 
Sbjct: 891  IVDQVLLTVSQEGYKFTKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGIT 950

Query: 942  PDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKH 1001
            PD+I+NPH  PSRMT+G +IE L GK   + G     + F +      TV+ IS  L  +
Sbjct: 951  PDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDTL----TVQKISSLLSDY 1006

Query: 1002 GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGR 1061
            G+   G +++Y+G TG  L   +F+GP YYQ+LKHMV DK+HAR  GP   LTRQP +GR
Sbjct: 1007 GYHLRGNEVLYNGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMQGR 1066

Query: 1062 ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS 1121
            AR+GGLR GEMERDC I++GA+  + ERL  +SDP+ V +C +CGL+   N +     C 
Sbjct: 1067 ARDGGLRFGEMERDCQISHGAAQFLRERLYDASDPYIVHMCNLCGLVAVANLRNDTYECK 1126

Query: 1122 TCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C+N   IS +++PYACKLL QEL SM++ PR+
Sbjct: 1127 GCRNKTRISQVRIPYACKLLFQELMSMSLAPRI 1159


>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
 gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
          Length = 1220

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1221 (36%), Positives = 665/1221 (54%), Gaps = 129/1221 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSFN F+N  I+  +  +  ++             I    
Sbjct: 25   DSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQHTTEADNISRKY 84

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------- 123
             + F  + + +PSMT  DGVS  + P   RL ++TYA+ + V I                
Sbjct: 85   EISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIRKRTYEAVDIPGRDLK 144

Query: 124  VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTE 183
             +    E    +++ + IGR+PIMLRS  C+L    E++L +L ECP D GGYFII G+E
Sbjct: 145  YEVIDEESEMSDESKIFIGRVPIMLRSKYCLLDELTESDLYKLKECPFDMGGYFIINGSE 204

Query: 184  KVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY------ 232
            KVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K+Y      
Sbjct: 205  KVLIAQERSAGN--IVQVFKKSAPSPISHIAEIRSALE--KGSRFISTLQVKLYGREGST 260

Query: 233  -----LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLD 284
                   L    + IPI+++ +A+G+  D E+++ +     D +   LL P +EE     
Sbjct: 261  NRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLELLKPCVEE--GFV 318

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K F++  M
Sbjct: 319  IQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 376

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILS 400
            + R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q++V+    
Sbjct: 377  INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVE---- 432

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
                +  F+L   +   +IT GL+  L+TGN+ + K+    R G++QVL R ++  TL H
Sbjct: 433  ---EAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSSTLSH 489

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   +  P+
Sbjct: 490  LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPI 549

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            I+     G+E LE     +  +P++  V  NG+  G HR P    D +RKLRR G +   
Sbjct: 550  ITFLNEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDVTSE 607

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADK----GISRIK--EHHMKELL---------- 623
            VS+  + +++ + I +D GRV RPL I D+    G+  +K  + H+++L+          
Sbjct: 608  VSIVRDIREKELKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIRKLMMTEYQDIEGG 667

Query: 624  ----DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT----------------- 662
                D   ++   L EGL+EY+D  EE   LIA+   D  P                   
Sbjct: 668  FEEEDINYTWSSLLNEGLVEYIDAEEEETILIAMQHEDLDPTIEAADPEEELDPAKRIKA 727

Query: 663  -------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 728  IHHSSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDT 787

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            +  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  
Sbjct: 788  MANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF 847

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    ++   S ++   +P RT     RM+   +       LDDDGL APG  
Sbjct: 848  RSLFFRSYMDQEKRIGMSITESFEKPQRT--NTLRMKHGTYDK-----LDDDGLIAPGVR 900

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +  +D+ I K +P+      +   GQ  + +     +      E  +VD+V + +++ G 
Sbjct: 901  VSGDDMIIGKTTPIPPDAEEL---GQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGL 957

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  G+ PDLI+NPH  PSRM
Sbjct: 958  KFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRM 1017

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TV  +IE L  K     G     S F +      TV+ IS  L +HG+   G +++Y+G 
Sbjct: 1018 TVAHLIECLLSKVAALSGNEGDASPFTDI-----TVDGISRLLREHGYQSRGFEVMYNGH 1072

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 1073 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERD 1132

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMK 1133
            C+IA+GA+  + ERLM +SD F V +C VCGL+     KLK     C  CKN  +I  + 
Sbjct: 1133 CMIAHGAAAFLKERLMEASDAFRVHICGVCGLMTVVA-KLKHNQFECRGCKNKIDIYQIH 1191

Query: 1134 LPYACKLLIQELQSMNIVPRL 1154
            +PYA KLL QEL +MNI PRL
Sbjct: 1192 IPYAAKLLFQELMAMNIAPRL 1212


>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
            strigosozonata HHB-11173 SS5]
          Length = 1247

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1226 (35%), Positives = 663/1226 (54%), Gaps = 128/1226 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPS--I 78
            D + ++  F   +GLV+Q LDSF+ FV   ++++V  N  ++         S  D +   
Sbjct: 36   DCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGSATDMTRRY 95

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPI--------LVNIEYVQGSHT 129
             ++F  + + +P++T  DG    + P   RL ++TY AP+        L+  E  +G+  
Sbjct: 96   EIKFGQIYLSRPTVTEADGSVMPVFPQEARLRNLTYNAPLYIEMRKRTLIGREDPEGAPG 155

Query: 130  EKTTMEK--------NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            +    E+          V IG++PIMLRS  C+L+   E +L  L ECP D GGYFII G
Sbjct: 156  DVIWQEEPGDAAEDSRKVWIGKVPIMLRSTFCILHDIPENDLFDLNECPYDSGGYFIING 215

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+ S+  ++M        
Sbjct: 216  SEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTI-SQFQVKMYTRNQERS 274

Query: 235  LNQFVKK--------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANL 283
            L   +K         IPI VV +A+G+ SD+++++ +    +D +   +L P I++    
Sbjct: 275  LGNLIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIQD--GF 332

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   
Sbjct: 333  AIQDREIALDFIGNR--GTTTGLSKERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGY 390

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +    
Sbjct: 391  MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCIET-- 448

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
               +F+LS  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 449  -GKQFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRR 507

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  ++      P+I  
Sbjct: 508  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSISAPVIEF 567

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I    S
Sbjct: 568  LEEWGLESLE----ENAHSSTPCTKVFVNGVWMGVHRDPLNLVKTIKKLRRKDDISPETS 623

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIADKG--------ISRIKEHHMKELLDGVRS----- 628
            V  + ++R + I++D GRVCRPL I +          I ++ +H+ + +LD   +     
Sbjct: 624  VVRDIRERELRISTDAGRVCRPLFIVENQQLVLKKSHIEKLHKHNTEPVLDDAGAPTFDE 683

Query: 629  ----------FDDFLREGLIEYLDVNEENNALIALYEGDAT---------------PD-- 661
                      FD+ ++EG+IEYLD  EE   +I +   D                 PD  
Sbjct: 684  NGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTPEDLENARLKQQGHDPSQDDPDFD 743

Query: 662  -------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                          TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 744  PAARIKTGTQAHLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTN 803

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
             L RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+M YSGY+ ED+++MN+S
Sbjct: 804  FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQS 863

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R +  + Y  + +K      +   +P R      RM+   +  L     +DDG
Sbjct: 864  SIDRGLFRSMYFRSYMDMEKKSGIQQLEEFEKPTRDT--TLRMKHGTYDKL-----EDDG 916

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            L APG  +   D+ I K +P+      +    +  +R R      K    E   VD+V +
Sbjct: 917  LIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTR-RDVSTPLKST--EQGTVDQVLI 973

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             ++  G   +K  IR TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NP
Sbjct: 974  TTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINP 1033

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMT+G ++E L  K     G     + F +      TVES+S+ L + G+   G 
Sbjct: 1034 HAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDL-----TVESVSQFLRQRGYQSRGL 1088

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y G TG  LQA I++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 1089 EVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 1148

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDN 1128
             GEMERDC+I++G +  + ERL  +SD + + VC +CGL    N K +   C  CKN   
Sbjct: 1149 FGEMERDCMISHGIAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTE 1208

Query: 1129 ISSMKLPYACKLLIQELQSMNIVPRL 1154
             S + +PYA KLL QELQSMNI  RL
Sbjct: 1209 CSQLYIPYAAKLLFQELQSMNIAARL 1234


>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1228

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1210 (35%), Positives = 660/1210 (54%), Gaps = 111/1210 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F   +GLV+Q LDSF+ FV   ++++V  N  ++       +G +  +  R 
Sbjct: 33   DCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHETDMTRRY 92

Query: 82   ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM--- 134
               F  + + +P++T  DG    + P   RL ++TY+AP+ ++++    +  E   M   
Sbjct: 93   EIHFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIDMKKRVLTGREDPDMPGE 152

Query: 135  -------------EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
                         E   V IG++PIMLRS  C+L    + +L  L ECP D GGYFII G
Sbjct: 153  VTWIPEDPDSENQEGTKVWIGKVPIMLRSTFCILRELQDQDLYDLNECPYDSGGYFIING 212

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   L
Sbjct: 213  SEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMFHRSQERSL 272

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLD 284
             N       ++K  IPI VV +A+G+ SD+++++ +  D + S +L    P I++     
Sbjct: 273  GNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDD--GFV 330

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M
Sbjct: 331  IQDREVALDFIGNR--GTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYM 388

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A + +  +DD+D+ G KRL+L+G L++ LF  LFK +  +V + +   +     
Sbjct: 389  IHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVET--- 445

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F++S  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R 
Sbjct: 446  HKEFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRC 505

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I   
Sbjct: 506  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFL 565

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               G+E LE    E  H+  +   +F NG+ +G HR P      ++KLRR   I   VSV
Sbjct: 566  EEWGLESLE----ENAHSSAACTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSV 621

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS--------FDDFLR 634
              + ++R + + +D GRVCRPL I +     +++ H+K L  G R         +D  ++
Sbjct: 622  VRDIRERELRLYTDAGRVCRPLFIVEDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVK 681

Query: 635  EGLIEYLDVNEENNALIALYEGD--------ATPDT----------------------TH 664
             G+IE LD  EE   +IA+   D        A  DT                      TH
Sbjct: 682  GGVIELLDAEEEETVMIAMTPEDLENSRLQSAGIDTRQSDEDYDPAARLKSGINAHTWTH 741

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ
Sbjct: 742  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQ 801

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y 
Sbjct: 802  KPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYM 861

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
             + +K      +   +P R      RM+   +  +     +DDGL APG  +   D+ I 
Sbjct: 862  DLEKKSGIQQLEEFEKPTRDT--TLRMKHGTYDKI-----EDDGLIAPGTGVSGEDIIIG 914

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K +P+      +    +T +R R      K    E  +VD+V + ++  G   +K  +R 
Sbjct: 915  KTAPIPPDSEELGQRTRTHTR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKVRVRS 971

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L
Sbjct: 972  TRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECL 1031

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
              K     G     + F +      TVES+S  L + G+   G +++Y G TG  LQA +
Sbjct: 1032 LSKVATLIGNEGDATPFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQV 1086

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            ++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G + 
Sbjct: 1087 YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAA 1146

Query: 1085 LIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQE 1144
             + ERL  +SD + + VC +CGL    N K +   C  CKN    S + +PYA KLL QE
Sbjct: 1147 FLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQLYIPYAAKLLFQE 1206

Query: 1145 LQSMNIVPRL 1154
            LQSMNI  RL
Sbjct: 1207 LQSMNIAARL 1216


>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
          Length = 1222

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1226 (36%), Positives = 668/1226 (54%), Gaps = 137/1226 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSFN F+N  I+ ++  +  ++             I    
Sbjct: 25   DSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNISRKY 84

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
             + F  + + +PSMT  DGVS  + P   RL ++TYA+ + V I                
Sbjct: 85   EISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDLK 144

Query: 122  -EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
             E +Q    E    E+  + IGR+PIMLRS  C+L    E++L RL ECP D GGYFII 
Sbjct: 145  YEIIQ---EESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY--- 232
            G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K+Y   
Sbjct: 202  GSEKVLIAQERSAGN--IVQVFKKSAPSPISHIAEIRSALE--KGSRFISTLQVKLYGRE 257

Query: 233  --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                      L    + IPI+++ +A+G+  D E+++ +     D +   +L P +EE  
Sbjct: 258  GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEE-- 315

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K F++
Sbjct: 316  GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFL 373

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDI 397
              M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q++V+ 
Sbjct: 374  GYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVE- 432

Query: 398  ILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGT 456
                   +  F+L   +   +IT GL+  L+TGN+  ++  M  R G++QVL R ++  T
Sbjct: 433  ------EAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSST 486

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   + 
Sbjct: 487  LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 546

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
             P+I+     G+E LE     +  +P++  V  NG+  G HR P    D +RKLRR G I
Sbjct: 547  VPIITFLNEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDI 604

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPL-VIADKGIS------RIKEHHMKELL------ 623
               VS+  + +++ + I +D GRV RPL V+AD   +      ++++ H+++L+      
Sbjct: 605  TAEVSIVRDIREKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQD 664

Query: 624  --------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------------- 662
                    D   ++   L +G++EY+D  EE   LIA+ + D  P               
Sbjct: 665  IEGGFEDEDINYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPA 724

Query: 663  ------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
                        TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N  
Sbjct: 725  RRIKAIHHSNTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYN 784

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+
Sbjct: 785  VRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSI 844

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            D G  R +  + Y    ++   S ++   +P RT     RM+   +  L     DDDGL 
Sbjct: 845  DSGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTN--TLRMKHGTYEKL-----DDDGLI 897

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 890
            APG  +  +D+ I K +P+      +   GQ  + +     +      E  +VD+V + +
Sbjct: 898  APGVRVSGDDIIIGKTTPIPPDAEEL---GQRTAFHSKRDASTPLRSTENGIVDQVLITT 954

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
            ++ G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  G+ PDLI+NPH 
Sbjct: 955  NQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHA 1014

Query: 951  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1010
             PSRMTV  +IE L  K     G     S F +      TV+ IS+ L +HG+   G ++
Sbjct: 1015 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVDGISKLLREHGYQSRGFEV 1069

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1070
            +Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR G
Sbjct: 1070 MYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFG 1129

Query: 1071 EMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGDN 1128
            EMERDC+IA+GA+  + ERLM +SD F V +C +CGL+     KLK     C  CKN  +
Sbjct: 1130 EMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVA-KLKHNQFECRGCKNKID 1188

Query: 1129 ISSMKLPYACKLLIQELQSMNIVPRL 1154
            I  + +PYA KLL QEL +MNI PRL
Sbjct: 1189 IYQVHIPYAAKLLFQELMAMNIAPRL 1214


>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1103 (39%), Positives = 620/1103 (56%), Gaps = 73/1103 (6%)

Query: 95   DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLR 149
            DG +  L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLR
Sbjct: 6    DGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLR 65

Query: 150  SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA 209
            S  C LY   E +L  LGECPLD GGYFII G+EKVL+ QE++S N V +   ++ N  A
Sbjct: 66   SSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 125

Query: 210  SVTS------------STETVK--SKTVIQMEKGKMYL--LLNQFVKKIPIMVVMKAMGM 253
             V              ST  V+  S+T  +      Y+   L     +IPI++V +A+G 
Sbjct: 126  FVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGF 185

Query: 254  ESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPND 310
             +D+++++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + +T G     
Sbjct: 186  VADKDILEHICYDFNDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGATVGVTREK 241

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
            R   A  IL+   L +V +       K +Y   ++ R++   L + A DD+D+ GNKRL+
Sbjct: 242  RIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 301

Query: 371  LSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            L+G L+   F  LF+ +  +V    QK VD            +L   I   +IT GL+ +
Sbjct: 302  LAGPLLGGXFRMLFRKLTRDVRAYVQKXVD-------NGKDVNLQFAIKAKTITSGLKYS 354

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            L+TGN+        R G++QVL RL++  TL H+ R++    +  K++ PR L  SQWGM
Sbjct: 355  LATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGM 414

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            +CP +TPEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P +  
Sbjct: 415  MCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATK 472

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  +G HR P      +R+LRR   +   V V  + + + + I +D GR  RPL I
Sbjct: 473  IFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFI 532

Query: 607  ADKGISRIKEHHMKELLDGVR----SFDDFLREGLIEYLDVNEENNALIALYEGD----- 657
             +K    IK+  ++ L          + D + +G IEY+D  EE   +I++   D     
Sbjct: 533  VEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLXQAR 592

Query: 658  -----ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                 A  DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 593  LNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 652

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY  ED+++MN+SS+D
Sbjct: 653  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYSQEDSVIMNQSSID 712

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RGF R +  + Y    +K      +   RPDR    A  M + H S      LDDDGLA 
Sbjct: 713  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ASTMGMRHGS---YDKLDDDGLAP 765

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +   DV I K +P+    S     GQ  SRY     +      ET +VD+V L ++
Sbjct: 766  PGTRVSGEDVIIGKTTPI----SQDDAQGQA-SRYTRKDHSTSLRHSETGMVDQVLLTTN 820

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
             +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 821  ADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 880

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G++IE + GK     G+    + F +      TV++IS+ L K G+   G + +
Sbjct: 881  PSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETM 935

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +LTRQP EGR+R+GGLR GE
Sbjct: 936  YNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE 995

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDC+IA+GA+  + ERL   SD + V VC  CGL+   N K  +  C  CKN  +I  
Sbjct: 996  MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFECRGCKNKTDIVQ 1055

Query: 1132 MKLPYACKLLIQELQSMNIVPRL 1154
            + +PYACKLL QEL +M I PR+
Sbjct: 1056 VHIPYACKLLFQELMAMAIAPRM 1078


>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
          Length = 1234

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1189 (36%), Positives = 663/1189 (55%), Gaps = 95/1189 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-------------VSGIDP 76
            D + ++  + + +GLV+Q LDSF+ F+   ++++V  +  I              +  D 
Sbjct: 59   DAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRHIRINPEAQYTPGQAKAATDT 118

Query: 77   SIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
               ++F  + + +P+MT  DG +  + PH  RL ++TY+AP+ V++  +  Q + T  T 
Sbjct: 119  IYVIQFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANATGPTK 178

Query: 134  ---MEKNDVV------IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
               ME  D V      IG +PIMLRS  CVL  K + EL  L EC  D GGYF+I G+EK
Sbjct: 179  IEEMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLINGSEK 238

Query: 185  VLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVK------SKTVIQMEK---GKMYLLL 235
            VL+ QE++S N V        +  + V  +   V+      S   +QM +   GK  +  
Sbjct: 239  VLIAQERMSNNHVYCFRKSGVSKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKSAISG 298

Query: 236  NQ------FVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDI 285
            NQ      ++++ IP++++ +A+G  +D+E+++ +  D     L+    PS+EE     I
Sbjct: 299  NQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEA--FVI 356

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              QE AL+++  +      G    DR   A  IL+   L +V V ++N   K +++  ++
Sbjct: 357  QEQEVALDFIGRRGSAINVGKA--DRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVV 414

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSK 401
             +++   L +   DD+D+ GNKRL+L+G L+  LF  LFK +  +V    QK VD     
Sbjct: 415  HKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVD----- 469

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
                  F+L+  I   +IT GL  +L+TGN+ +++    + G++QVL RL++  +L H+ 
Sbjct: 470  --NGKDFNLTLAIRSRTITNGLRYSLATGNWGMQK-TASKAGVSQVLNRLTYASSLSHLR 526

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R++    +  K + PR L  + WGM+CP +TPEG+A GLVKNLALM +++    + P++ 
Sbjct: 527  RLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILE 586

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                   E+LE +  + +  P+S  +  NG  +G HR P      +R LRR   I   VS
Sbjct: 587  FLEEWATENLEEIKPQII--PHSTKIFVNGNWVGVHREPNELVRTLRSLRRCVDIDAEVS 644

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS---FDDFLREGLI 638
            V  +   R + I +D GRVCRPL I ++    +++  + +L +   +   + + L +G++
Sbjct: 645  VIRDLMNRELRIYTDAGRVCRPLFIVEENQLLLQKEQVVKLQNHKITNYRWHNLLTDGVV 704

Query: 639  EYLDVNEENNALIALYEGD---ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQC 695
            E +D  EE   +IA+   D    T   TH EI P  ILG+ A +IP+P HNQSPRNTYQ 
Sbjct: 705  ELIDTEEEEVCMIAMEPKDVGLGTQQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 764

Query: 696  AMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 755
            AMGKQAMG    N   RMD++  +L YPQ+PL+TTR +E + + +L +G NA V + SY+
Sbjct: 765  AMGKQAMGVYCSNFRARMDTMANVLNYPQKPLVTTRAMEFLHFRELPSGINAIVGIASYT 824

Query: 756  GYDIEDAIVMNKSSLDRG-----FGRCIVVKKYTAINQKYANSTS-----DRILRPDRTG 805
            GY+ ED+++MN+S++DRG     F RC V ++        + +T+     +   +P R  
Sbjct: 825  GYNQEDSLIMNQSAIDRGLFRSTFYRCYVDQERNKSPHGGSAATALVSNCEEFEKPSRDN 884

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
                R    H        LD DGL APG  +  ND+ I K SPL      +S     + R
Sbjct: 885  CLGLRHGSYHK-------LDADGLVAPGTRVSGNDIIIGKTSPLP-----VSEDSSLEQR 932

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            ++    +      E  ++D V L ++ +G    K   R+ R P++GDKF+SRHGQKG  G
Sbjct: 933  HQKRDASTSLRSHENGIIDSVMLTTNADGFKFTKVRFRNIRIPQIGDKFASRHGQKGTIG 992

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  GI PD+I+NPH  PSRMTVG +IE L GK     G     + F +  
Sbjct: 993  MTYRQEDMPFTLEGITPDIIVNPHAIPSRMTVGHLIECLLGKVSSQTGDEGDATPFTDV- 1051

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                TV++I++TL   G+  +G +++YSG TG PL A IF+GP +YQ+LKHMV DK+H+R
Sbjct: 1052 ----TVQAIADTLHNLGYQRHGNEVLYSGHTGRPLTAQIFIGPTFYQRLKHMVDDKIHSR 1107

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  MLTRQP EGRAR GGLR+GEMERDCLI++G++  + +RL  +SD + V VC +C
Sbjct: 1108 SRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDIC 1167

Query: 1106 GLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            G++   N +     C  C+N   IS + +PY+CKLL QEL SM+I PRL
Sbjct: 1168 GIIAIANLRKMTFECRNCRNKTQISQLHIPYSCKLLFQELMSMSIAPRL 1216


>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
            sp. DJM-731 SS1]
          Length = 1258

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1208 (35%), Positives = 658/1208 (54%), Gaps = 109/1208 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---------RANDRIVSGIDPS--I 78
            D +Q++  F + +GLV+Q LDSF+ FV   ++++V         +AN      +D +   
Sbjct: 61   DCWQIITSFFEEKGLVRQQLDSFDEFVQNSMQEVVDESGELILDQANQHSGRELDETKRY 120

Query: 79   FLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
             L F  + + +PS M  DG +  + P   RL ++TY+AP+ +++                
Sbjct: 121  ELSFGQIYLSRPSTMEPDGSNLPIFPQEARLRNLTYSAPLYIDVKKRVLSGRENPEDVNG 180

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            E +  S       E + + +G++P+MLRS  C+L G  + +L  L ECP D GGYFII G
Sbjct: 181  EMIWESQNTDADKEIHKIWVGKVPVMLRSTFCILSGLSDGDLYDLNECPYDQGGYFIING 240

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVK----SKTVIQMEKGK 230
            +EKVL+ QE+++ N V +    +         I + V    + +       T   +EK  
Sbjct: 241  SEKVLIAQERMAANHVYVFAKAQPSPISHLAEIRSQVEKGGKQISLLQIKMTHRNLEKST 300

Query: 231  MYLLLNQ--FVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLD 284
              L+  Q  +++  IP++VV +A+G+  D++V++ +  DP   A+L    P IEE     
Sbjct: 301  GSLMRAQLPYIRNDIPVVVVFRALGIVPDRDVLEHICYDPEDHAMLEMLKPCIEEA--FV 358

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+Y+ G+ + +T G   + R   A  IL+   L ++         K ++   M
Sbjct: 359  IQDREVALDYI-GR-RGTTTGLSRDKRLRYAQEILQKEMLPHISTQEGAESKKAYFFGYM 416

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R+V A L++  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V +     + K   
Sbjct: 417  VHRLVLAALDRRELDDRDHFGKKRLDLAGPLLATLFRMLFRRLTKDVYR----YMQKCVE 472

Query: 405  SSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
            + R F+++  +   +IT GL+ +L+TGN+ D K+F   + G++QVL R +F  TL H+ R
Sbjct: 473  THREFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRR 532

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P++  
Sbjct: 533  TNTPIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSQPVVEF 592

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                G+E L   + E +     F+   NG+ +G HR P+   + +R LRR+  I   +SV
Sbjct: 593  LEEWGLEPLGDQTNETITATKVFV---NGVWMGIHRNPQHLVETVRTLRRSDGISSEISV 649

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKG-----ISRIKEHHMKELLDGV---RSFDDFLR 634
              + ++R + + +D GRVCRPL I ++G     I + + + ++  +D       +   + 
Sbjct: 650  VRDIRERELRLYTDAGRVCRPLFIVNEGTQDLVIGKKEINCLQNRVDDEGQPYGWSQLVS 709

Query: 635  EGLIEYLDVNEENNALIALYEGDATPD----------------------------TTHIE 666
             G++E LD  EE   +IA+   D                                 TH E
Sbjct: 710  SGMVELLDAEEEETVMIAMTPEDLEASKTKRGTGYISNEPQNAAVRIKSIVHHEHWTHCE 769

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+P
Sbjct: 770  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRMDTMANILYYPQKP 829

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + YT +
Sbjct: 830  LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYTDM 889

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +       +   +P R          V   +     L+ DGL APG  I   D+ I K 
Sbjct: 890  EKSTGVVPIEEFEKPHRD-------TTVRMKHGTYEKLEADGLVAPGIGINGEDIIIGKT 942

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +PL      +    +T +R R      K    E  +VD+V L +++NG   +K  IR TR
Sbjct: 943  APLPPDSEELGQRTRTHTR-RDVSTPLKST--ENGIVDQVLLSTNENGVKFVKVRIRSTR 999

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             P++GDKF+SRHGQKG  G   +QED PF+  GI PD+++NPH  PSRMT+G ++E L  
Sbjct: 1000 IPQIGDKFASRHGQKGTIGMTYRQEDMPFAANGITPDIVINPHAIPSRMTIGHLVECLLS 1059

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     G     + F +      TVES+S  L   G+   G +++Y G TG  LQA +++
Sbjct: 1060 KLATLIGNEGDATPFTDL-----TVESVSSLLRNKGYQQRGLEVMYHGHTGRKLQAQVYL 1114

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GP YYQ+LKHMV DK+HAR  GP  ++TRQP EGR+R+GGLR GEMERDC+I++G +  +
Sbjct: 1115 GPTYYQRLKHMVDDKIHARARGPVQIMTRQPVEGRSRDGGLRFGEMERDCMISHGVASFL 1174

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ER+   SD   + VC +CGL    N K +   C  CKN    +   +PYA KLL+QELQ
Sbjct: 1175 KERMFDQSDAARLHVCDICGLASIANLKKQTFECRACKNKTRSTQFYIPYAAKLLLQELQ 1234

Query: 1147 SMNIVPRL 1154
            +MNI PR+
Sbjct: 1235 AMNIAPRM 1242


>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
            MK1]
 gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
            MK1]
          Length = 1124

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1145 (37%), Positives = 646/1145 (56%), Gaps = 47/1145 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            S+ D++ ++  + K RGLV+QHLDSFN FV   +++I+     I + I P + ++   +R
Sbjct: 3    SIDDRWIIVEAYFKSRGLVRQHLDSFNDFVRNKLQEIIDEQGEITTEI-PGLKIKLGKIR 61

Query: 87   IGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            +G+P +   D    ++ P   RL ++TY+API + +  ++ +       E  +V IG IP
Sbjct: 62   VGKPRVREADKGDREITPMEARLRNLTYSAPIYLTMIPIENN----IEGEPIEVHIGDIP 117

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            IML+S           +L  +GE P DPGGYFII G+E+V++ QE L+ NRV++D  K G
Sbjct: 118  IMLKSSADPTSELSPEKLVEIGEDPKDPGGYFIINGSERVIVTQEDLATNRVLVDVGKSG 177

Query: 206  -NIN--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             NI   A + SST   +    I+ ++   +++       +IP +++M+A+G+ +D++V  
Sbjct: 178  SNITHTAKIISSTAGYRVPITIERLKDSTIHVSFPAMPGRIPFVILMRALGISTDRDVTY 237

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
             V  DP     LLPSIE+ ++  I T+E AL+++  +V     G     R  +A  IL  
Sbjct: 238  AVSLDPEIQNELLPSIEQASS--IATKEDALDFIGNRV---AIGQKREMRIQKAEQILDK 292

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++    ++   K +Y+A  + +++E  L +   DDKD+  NKRL+L+G L + LF 
Sbjct: 293  YFLPHLGTSPSDRMAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLFASLFR 352

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR 441
              FK  + ++   ++       R  R  L+  +  D I+  +   L+TGN+        R
Sbjct: 353  VAFKAFVKDLVYQLE---KSKVRGRRLALNALVRPDIISERIRHALATGNW-----VGGR 404

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++Q+L R +++  L H+ RV     + +     R L  +QWG +CP +TPEG   GLV
Sbjct: 405  TGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLV 464

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELL-----SGEELHNPNSF-LVIFNGLILG 555
            KN+AL+  ++    E  +    Y LGV  ++ +     +GE++     +  VI NG ++G
Sbjct: 465  KNIALLAQISVGINERNVEKTLYNLGVTPVDEIIRKVEAGEDVSEYQGWSRVILNGKLVG 524

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
             +   +  A  +R  RR G++ + V+V   V E    VYI  DGGRV RPLV+   G   
Sbjct: 525  YYPDGEELAQKIRDRRREGELSDEVNVSHMVTESFDEVYINCDGGRVRRPLVVVRNGKPL 584

Query: 614  IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
            + +  ++ L  G  +FD  +REG IE+LD  EE NALIA+   D T D TH+EI    +L
Sbjct: 585  VAKEDIENLKKGKITFDTLVREGKIEFLDAEEEENALIAMEPKDVTKDHTHLEIWAPAVL 644

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G+ A +IPYP HNQSPRNTYQ AM KQA+G  A N   R D+  +LL YPQ+P++ TR +
Sbjct: 645  GITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRAL 704

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E +GY +  AG NA  A+MSY+GY++EDA++MNKSS+DRG  R    + Y+A   KY   
Sbjct: 705  EAIGYTERPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGG 764

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
              D+IL P+    G       +       +L+ +G+ +P   +K  DV I K SP     
Sbjct: 765  QEDQILLPEAGVRG-------YKGKEYYRLLESNGIVSPEVEVKGGDVLIGKVSPPRFLQ 817

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
                 +     R  S    +    GE   VD V +    +G+  +K  +R  R PE+GDK
Sbjct: 818  EFKELSPDQSKRDTSIITRH----GERGTVDLVLVTETSDGNKLVKVRVRDLRIPEIGDK 873

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F++RHGQKGV G ++ Q D P++ RG+ PD+I+NPH  PSRMTVG+++E + GK   + G
Sbjct: 874  FATRHGQKGVIGMLIPQVDMPYTVRGLVPDIILNPHALPSRMTVGQIMEAIAGKYVAASG 933

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                 + F     +   +E I + L + G+  +G +++Y G TG  +++ I  G +YYQK
Sbjct: 934  HPIDATPF-----YNLPIEEIQKKLSELGYLSDGTEVVYDGRTGEKIKSRILFGIVYYQK 988

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DKMH RG GP  +LTRQPTEGRAR GGLR GEMERDCLI YGA+MLI +RL+ +
Sbjct: 989  LHHMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDN 1048

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD   V VC  CG +G+Y+      +C    +   +S + + YA KLL+QEL SM I PR
Sbjct: 1049 SDRAVVYVCDQCGYVGWYDRAKNKYVCPIHGDKTTLSPVTISYAFKLLLQELMSMVIAPR 1108

Query: 1154 LKLAE 1158
            L L +
Sbjct: 1109 LVLGD 1113


>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1220

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1207 (35%), Positives = 660/1207 (54%), Gaps = 108/1207 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  ++       +G +  +  R+
Sbjct: 30   DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHETDMTRRY 89

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +++ GQ     P++T  DG    + P   RL ++TY+AP+ + +               
Sbjct: 90   -EIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGREDPDTPG 148

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            E    +  E    +   V IG++PIMLRS  C+L G  + +L  L ECP D GGYFII G
Sbjct: 149  EIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIING 208

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   L
Sbjct: 209  SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSL 268

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDI 285
             N       ++K  IPI VV + +G+ SD+++++ +  D +  A +L  ++ C +    I
Sbjct: 269  GNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVI 327

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M+
Sbjct: 328  QDREVALDFIGNR--GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMI 385

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +      
Sbjct: 386  HRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---H 442

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
              F+L+  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +
Sbjct: 443  KEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCN 502

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I    
Sbjct: 503  TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLE 562

Query: 525  CLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
              G+E LE    E  H+ +    +F NG+ +G HR P      ++KLRR   I   VSV 
Sbjct: 563  EWGLESLE----ENAHSTSPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 618

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLREGL 637
             + +++ + I +D GRVCRPL I +     + + H++ L  G         ++  ++ G+
Sbjct: 619  RDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGV 678

Query: 638  IEYLDVNEENNALIALY-------------------EGDATPDT-----------THIEI 667
            IE LD  EE   +I++                    +GD  P             TH EI
Sbjct: 679  IELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTHCEI 738

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILG+ A +IP+P HNQSPRNTYQ AM KQAMG    N L RMD++  +L YPQ+PL
Sbjct: 739  HPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFLIRMDTMANILYYPQKPL 798

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + 
Sbjct: 799  ATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLE 858

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +K      +   +P R      RM+   +  L     +DDGL APG  ++  D+ I K +
Sbjct: 859  KKSGIQQLEEFEKPTRDT--TLRMKHGTYDKL-----EDDGLIAPGTGVRGEDIIIGKTA 911

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P+      +    +T +R R      K    E  +VD+V + ++  G   +K  +R TR 
Sbjct: 912  PIPPDSEELGQRTRTHTR-RDVSTPLKST--EIGIVDQVLITTNSEGQKFVKVRVRATRI 968

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  K
Sbjct: 969  PQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSK 1028

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G     + F +      TVES+S  L + G+   G +++Y G TG  LQA I++G
Sbjct: 1029 VATLIGNEGDATPFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLG 1083

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + 
Sbjct: 1084 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1143

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            ERL  +SD + + VC +CGL    N K +   C +CKN    S + +PYA KLL QELQS
Sbjct: 1144 ERLFEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQIYIPYAAKLLFQELQS 1203

Query: 1148 MNIVPRL 1154
            MNI  RL
Sbjct: 1204 MNIAARL 1210


>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
 gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
          Length = 1222

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1213 (35%), Positives = 660/1213 (54%), Gaps = 108/1213 (8%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN-DRIVSGIDPSI--- 78
            AP+ +  D + ++  F   +GLV+Q LDSF+ FV   ++++V  N D I+   D      
Sbjct: 27   API-TQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGQA 85

Query: 79   -------FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE-------- 122
                    ++F  + + +P++T  DG    + P   RL ++TY+AP+ + +         
Sbjct: 86   GDMTRRYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGRE 145

Query: 123  --YVQGSHTEKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
               V G  T +   E  D     + IG++PIMLRS  C+L+   + +L  L ECP D GG
Sbjct: 146  DPAVPGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSGG 205

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEK 228
            YFII G+EKVL+ QE+++ N V +    +         I ++V    +T+    V    +
Sbjct: 206  YFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVERGGKTISQFQVKMFHR 265

Query: 229  GKMYLLLN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
             +   L N       ++K  IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C 
Sbjct: 266  NQERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCI 324

Query: 282  N--LDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDVFLANVPVHNNNFRPKC 338
            +    I  +E AL+++     R T    P DR  R A  IL+   L ++ +   +   K 
Sbjct: 325  DDGFVIQDREVALDFIGN---RGTTTGLPRDRRIRYAQEILQKEMLPHISMAEGSESKKA 381

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDII 398
            ++   M+ R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   
Sbjct: 382  YFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKC 441

Query: 399  LSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTL 457
            +        F+LS  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL
Sbjct: 442  VET---HKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTL 498

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
             H+ R +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM  ++      
Sbjct: 499  SHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSA 558

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKI 576
            P+I      G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I
Sbjct: 559  PVIEFLEEWGLESLE----ENAHSTTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDI 614

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL-----DGVR-SFD 630
               VSV  + ++R + + +D GRVCRPL I +     +++ H++ L      DG    ++
Sbjct: 615  SPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHVRWLANSENDDGEEWKWE 674

Query: 631  DFLREGLIEYLDVNEENNALIA-----------------------------LYEGDATPD 661
            + ++ G++E LD  EE   +I                              L  G     
Sbjct: 675  NLIKSGIVELLDAEEEETVMICMTPEDLEVSRRQSEGMEIQDHEDYDPAARLKAGTHAHT 734

Query: 662  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721
             TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L 
Sbjct: 735  WTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILY 794

Query: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
            YPQ+PL TTR++E + + +L AGQN+ VA++ YSGY+ ED++++N+SS+DRG  R I  +
Sbjct: 795  YPQKPLATTRSMEYLKFRELPAGQNSIVAILCYSGYNQEDSVIVNQSSIDRGLFRSIYYR 854

Query: 782  KYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV 841
             Y  + +K      +   +P R      RM+   +  +     +DDGL APG  +   D+
Sbjct: 855  SYMDLEKKSGIQQLEEFEKPTRET--TLRMKHGTYDKI-----EDDGLIAPGTNVTGEDI 907

Query: 842  YINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
             I K +P+      +    +T +R R      K    E  +VD+V + ++  G   +K  
Sbjct: 908  IIGKTAPIPPDSEELGQRTRTHTR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKVR 964

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TR P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++
Sbjct: 965  VRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLV 1024

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            E L  K     G     + F +      TVE +S  L + G+   G +++Y G TG  LQ
Sbjct: 1025 ECLLSKVATLIGNEGDATPFTDL-----TVEGVSTFLRQRGYQSRGLEVMYHGHTGRKLQ 1079

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            A +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G
Sbjct: 1080 AQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHG 1139

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             +  + ERL  +SD + + VC +CGL    N K ++  C  CKN    S + +PYA KLL
Sbjct: 1140 IAGFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLL 1199

Query: 1142 IQELQSMNIVPRL 1154
             QELQSMNI  RL
Sbjct: 1200 FQELQSMNIAARL 1212


>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
 gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
          Length = 1141

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1152 (37%), Positives = 651/1152 (56%), Gaps = 65/1152 (5%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
            ++ L  +F++ +GL +QHLDS+N FV T +++I+   + I +   P +  +   + + +P
Sbjct: 27   RWLLAKKFIEEQGLSRQHLDSYNRFVETMLQEIIDEQEIIETAF-PEVKFKLGKIEVLKP 85

Query: 91   -SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLR 149
             S   DG   ++ P   R+ ++TYA+P+ + I  V+          K+ V IG +PIM++
Sbjct: 86   VSREADGSEVEITPFEARVRNITYASPMYLEITLVENG----VESIKDKVYIGDLPIMIK 141

Query: 150  SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN--- 206
            S    L      EL ++ E P DPGGYFII GTEKV++ QE +  NRV++D  K G+   
Sbjct: 142  SKLDPLSKMSPEELIKINEDPDDPGGYFIINGTEKVIIAQEDMVTNRVLVDEGKAGSNVL 201

Query: 207  INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
              A   SST + +   ++++ K G + +       K+P  ++M+A+G E DQ++V  V  
Sbjct: 202  YTAKAISSTGSYRISVMMELHKDGTITISFGGVPGKLPFAILMRALGFEKDQDIVYAVSL 261

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            +P   +LLLPS+E  A+  I T + AL+Y+  +V     G    +R  RA  ++   F  
Sbjct: 262  NPEVQSLLLPSLE--ASRSIATVDDALDYIGTRV---AIGQVRENRIERAKQVIDKYFFP 316

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++     + R K F++A M   ++E  L     DD+D+  NKRL+L+G L++ LF   FK
Sbjct: 317  HLGSSPKDRRKKGFFLAQMANMILELSLGWREPDDRDHYANKRLKLAGDLLATLFRASFK 376

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMT 445
              + +     + +L+   RS RF +S  +  D +T  +   L+TG +        + G++
Sbjct: 377  NFVKDFNYQAEKVLT---RSKRFKISSIVRSDVMTERIRHALATGTW-----VGGKTGVS 428

Query: 446  QVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 505
            Q+L R +++  L H+ RV     +S+ +   R L  +QWG +CP +TPEG  CGLVKNL+
Sbjct: 429  QLLDRTNWMSMLSHLRRVVSPLSRSQPLFKARDLHGTQWGRMCPFETPEGPNCGLVKNLS 488

Query: 506  LMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS-FL----VIFNGLILGKHRRP 560
            L+T++T    E  + +  Y LGV  +E    + + N N+ +L    V  NG  +G +   
Sbjct: 489  LLTYITVGISEKKVENQLYKLGVIPVEEALKDAVENNNTQYLEMTRVYLNGRHIGYYPDG 548

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRC--VYIASDGGRVCRPLVIADKGISRIKEHH 618
            +  A  +R++RR G +   ++V   E+ +   +Y+ +D GR+ RPL+I   G   + +  
Sbjct: 549  EKLASTIREMRRKGDLHHEINVVYYERPQIKELYVNTDAGRIRRPLIIVRNGKPAVTKRD 608

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT----PDTTHIEIEPFTILG 674
            ++ L  G ++F D ++EG IEYLD  EE NA IAL   D       + TH+E+    I G
Sbjct: 609  IEALRKGEKTFSDLVKEGKIEYLDAEEEENAYIALDPSDLLGPNGKEYTHLELWTAGIFG 668

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V A  IPY  HNQSPRNTYQ AM KQA+G  A N   R DS  ++L +P++PL+ T+ +E
Sbjct: 669  VAASTIPYIEHNQSPRNTYQSAMVKQALGLYAANFNVRTDSRGHILHHPEKPLVQTKPLE 728

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            ++ Y++  AGQNA VA+MSY+GY+IEDA++ NKSS++RGF R    + Y+   +KY    
Sbjct: 729  VIRYNEKPAGQNAVVAIMSYTGYNIEDALIFNKSSVERGFMRSTFFRLYSTEEKKYPGGQ 788

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LET 851
             D+I  P+  G    R   V+        LD DG+ +P   +   +  I K SP   LE 
Sbjct: 789  EDKIEVPE-AGVKIYRGFEVYKK------LDPDGIISPETEVADGEALIGKTSPPRFLEE 841

Query: 852  R-----GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
                  G+ +        RY           GE  VVD V +   + GD  +K  +R  R
Sbjct: 842  FKEYGFGASVRKDTSVTIRY-----------GEKGVVDSVFISETQEGDKLVKVRVRDYR 890

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             PE+GDKF+SRHGQKGV G ++ Q D P++E GI PD+I+NPH FPSRMT+G+++E+L G
Sbjct: 891  IPEIGDKFASRHGQKGVIGMLIPQYDMPYTEEGIVPDIIINPHAFPSRMTLGQLLEMLAG 950

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     G+    + F +     + VE I   L+K G+S +G++++Y G TG  +   I +
Sbjct: 951  KTAALLGKTVDATPFSK-----EPVEEIRMKLMKKGYSPDGREVMYDGRTGEIIGVPIMI 1005

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            G +YYQ+L HMV DK HAR  GP  +LTRQPTEGRAR GGLR GEMERD L+ +GASML+
Sbjct: 1006 GIVYYQRLHHMVADKFHARSRGPVQLLTRQPTEGRAREGGLRFGEMERDVLVGHGASMLL 1065

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERL+ SSD   + VC  CG +G+++    A +C    +   I  +++ Y  KLLIQEL 
Sbjct: 1066 RERLLESSDKTVIYVCAKCGHIGWFDRNKNAYVCPIHGDKGEIYPVEVAYGFKLLIQELM 1125

Query: 1147 SMNIVPRLKLAE 1158
            SM I+PRLKL +
Sbjct: 1126 SMGIMPRLKLGD 1137


>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
            972h-]
 gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
            polypeptide
 gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
          Length = 1210

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1219 (36%), Positives = 666/1219 (54%), Gaps = 124/1219 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F +   L +Q L SF+ FV   +++IV  +  +        +G    +  R 
Sbjct: 16   DCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRY 75

Query: 82   ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------V 124
               F  + + +P+MT  DG +  + P   RL ++TY++P+ V++                
Sbjct: 76   EINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGE 135

Query: 125  QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
            +    E+   E + V IG+IPIMLRS  C+L G  ++EL  L ECP D GGYFII G+EK
Sbjct: 136  EEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEK 195

Query: 185  VLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKSKTVIQMEKGK----- 230
            V++ QE+ + N  I+   KK           I +++   +  + S  +  M +       
Sbjct: 196  VIIAQERSAAN--IVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQ 253

Query: 231  -MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECANLDIY 286
             +   L      IPI++V +A+G+  D+++++ +  DP   +   ++ P IEE     I 
Sbjct: 254  TIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEA--FVIQ 311

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
             ++ AL+Y+ GK + ST G     R   A  IL+   L ++         K F++  M+ 
Sbjct: 312  DKDIALDYI-GK-RGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIH 369

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
            RM+   L +   DD+D+ G KRL+L+G L++ LF  LF+ M  +V K     + K   ++
Sbjct: 370  RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYK----YMQKCVETN 425

Query: 407  R-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            R F+L+  +  + IT GL  +L+TGN+ D KR  ++R G++QVL R +F  TL H+ R +
Sbjct: 426  REFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTN 485

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM++V+      P+I    
Sbjct: 486  TPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLE 545

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
              G+E LE  +     +PN+  V  NG+ LG HR P    + +R LRR   I   VS+  
Sbjct: 546  EWGLETLEDYNPSA--SPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVR 603

Query: 585  NEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFD------- 630
            + +++ + + +D GR+CRPL I D       +G   I++ H+++L++    +D       
Sbjct: 604  DIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663

Query: 631  ---DFLREGLIEYLDVNEENNALIAL--------------YEGDATPD------------ 661
                 +  GLIEYLD  EE   +IA+              YE     D            
Sbjct: 664  GWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723

Query: 662  ---TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
                TH EI P  ILG++A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  
Sbjct: 724  VHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMAN 783

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+I+MN++S+DRG  R I
Sbjct: 784  ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSI 843

Query: 779  VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
              + YT   +K   +  +   RP R+     RM+   +  L     +DDGL APG  +  
Sbjct: 844  FYRTYTDQEKKIGMTVMEEFERPVRST--TLRMKHGTYDKL-----EDDGLIAPGTRVSG 896

Query: 839  NDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVALCSDKNGDL 896
             D+ I K +P+      +    Q       A++    P    E+ +VD+V + +++ G  
Sbjct: 897  EDIIIGKTAPIPLDHEELGQRTQL-----HAKRDVSTPLRSTESGIVDQVMVTTNQEGLK 951

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             +K  +R TR P++GDKF+SRHGQKG  G   + ED PFS +GI PD+I+NPH  PSRMT
Sbjct: 952  FVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMT 1011

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGI 1015
            V  ++E    K     G F      G+ +   D TVE++S+ L  HGF   G +++Y G 
Sbjct: 1012 VAHLVECQLSKVSALSG-FE-----GDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGH 1065

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  L A +F+GP YYQ+LKH+V DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 1066 TGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            C I++G S ++ ERL   SD + V VC +CGL+   ++K  +  C +C+N    S + LP
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185

Query: 1136 YACKLLIQELQSMNIVPRL 1154
            YA KLL QEL SMNI PRL
Sbjct: 1186 YAAKLLFQELMSMNIAPRL 1204


>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
          Length = 1210

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1219 (36%), Positives = 666/1219 (54%), Gaps = 124/1219 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F +   L +Q L SF+ FV   +++IV  +  +        +G    +  R 
Sbjct: 16   DCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRY 75

Query: 82   ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------V 124
               F  + + +P+MT  DG +  + P   RL ++TY++P+ V++                
Sbjct: 76   EINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGE 135

Query: 125  QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
            +    E+   E + V IG+IPIMLRS  C+L G  ++EL  L ECP D GGYFII G+EK
Sbjct: 136  EEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEK 195

Query: 185  VLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKSKTVIQMEKGK----- 230
            V++ QE+ + N  I+   KK           I +++   +  + S  +  M +       
Sbjct: 196  VIIAQERSAAN--IVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQ 253

Query: 231  -MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECANLDIY 286
             +   L      IPI++V +A+G+  D+++++ +  DP   +   ++ P IEE     I 
Sbjct: 254  TIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEA--FVIQ 311

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
             ++ AL+Y+ GK + ST G     R   A  IL+   L ++         K F++  M+ 
Sbjct: 312  DKDIALDYI-GK-RGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIH 369

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
            RM+   L +   DD+D+ G KRL+L+G L++ LF  LF+ M  +V K     + K   ++
Sbjct: 370  RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYK----YMQKCVETN 425

Query: 407  R-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
            R F+L+  +  + IT GL  +L+TGN+ D KR  ++R G++QVL R +F  TL H+ R +
Sbjct: 426  REFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTN 485

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM++V+      P+I    
Sbjct: 486  TPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLE 545

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
              G+E LE  +     +PN+  V  NG+ LG HR P    + +R LRR   I   VS+  
Sbjct: 546  EWGLETLEDYNPSA--SPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVR 603

Query: 585  NEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFD------- 630
            + +++ + + +D GR+CRPL I D       +G   I++ H+++L++    +D       
Sbjct: 604  DIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663

Query: 631  ---DFLREGLIEYLDVNEENNALIAL--------------YEGDATPDT----------- 662
                 +  GLIEYLD  EE   +IA+              YE     D            
Sbjct: 664  GWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723

Query: 663  ----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
                TH EI P  ILG++A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  
Sbjct: 724  VHARTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMAN 783

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+I+MN++S+DRG  R I
Sbjct: 784  ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSI 843

Query: 779  VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
              + YT   +K   +  +   RP R+     RM+   +  L     +DDGL APG  +  
Sbjct: 844  FYRTYTDQEKKIGMTVMEEFERPVRST--TLRMKHGTYDKL-----EDDGLIAPGTRVSG 896

Query: 839  NDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVALCSDKNGDL 896
             D+ I K +P+      +    Q       A++    P    E+ +VD+V + +++ G  
Sbjct: 897  EDIIIGKTAPIPLDHEELGQRTQL-----HAKRDVSTPLRSTESGIVDQVMVTTNQEGLK 951

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             +K  +R TR P++GDKF+SRHGQKG  G   + ED PFS +GI PD+I+NPH  PSRMT
Sbjct: 952  FVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMT 1011

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGI 1015
            V  ++E    K     G F      G+ +   D TVE++S+ L  HGF   G +++Y G 
Sbjct: 1012 VAHLVECQLSKVSALSG-FE-----GDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGH 1065

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  L A +F+GP YYQ+LKH+V DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 1066 TGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERD 1125

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            C I++G S ++ ERL   SD + V VC +CGL+   ++K  +  C +C+N    S + LP
Sbjct: 1126 CQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLP 1185

Query: 1136 YACKLLIQELQSMNIVPRL 1154
            YA KLL QEL SMNI PRL
Sbjct: 1186 YAAKLLFQELMSMNIAPRL 1204


>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1174

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1187 (37%), Positives = 653/1187 (55%), Gaps = 95/1187 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-------------VSGIDP 76
            D + ++  F + +GLV+Q LDSFN F+   +++IV     I             +  ++ 
Sbjct: 18   DAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQDIDSMEK 77

Query: 77   SIF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKT 132
              + + F  + + +P +T  DG +  L P   RL ++TY+AP+ V++  E        +T
Sbjct: 78   KTYKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPLYVDMVKEVTTVQPDGET 137

Query: 133  TMEK---NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            T+EK   N   IG++PIMLRS  C L+G  + EL  LGECP D GGYF+I G+EKVL+ Q
Sbjct: 138  TVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQ 197

Query: 190  EQLSKNRVIIDTDKKGN---INASVTSSTET----VKSKTVIQMEK-------GKMYLLL 235
            E++S N V +   K+ +     A   S  E       S  + Q+         G +   L
Sbjct: 198  ERMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASSCVMRQLHAPGTKDAPGPIRCTL 257

Query: 236  NQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKAL 292
                  IPI VV +A+G  +D+++++ +     D     +L PSIEE     I +QE AL
Sbjct: 258  PYIRTDIPIFVVFRALGFVADKDILEHIVYDLADNEMMEMLRPSIEEA--FVIQSQEVAL 315

Query: 293  EYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
            +++ GK + S  G     R   A  IL+   L +V V  +    K +++  M+ R++   
Sbjct: 316  DFI-GK-RGSAVGVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCS 373

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRF 408
            L +   DD+D+ GNKRL+L G L++ LF  LF+ +  +V    Q+ +D            
Sbjct: 374  LGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCID-------SGKEI 426

Query: 409  DLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
             L   I   +IT GL+ +L+TGN+  +     R G++QVL RLS+  TL H+ R++    
Sbjct: 427  QLQLAIKAKTITQGLKYSLATGNWGSQGAADIRAGVSQVLNRLSYSSTLSHLRRINSPIG 486

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  S WGM+CP +TPEG+A GLVKNLALM  V+      P++       +
Sbjct: 487  REGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSEPILEFLDEWTM 546

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ 588
            E+LE +S   +    S  +  NG+ +G HR P      +RKLRR   I   VSV  + + 
Sbjct: 547  ENLEEISPSLI--AESTKIFLNGVWVGVHRNPADLVRTLRKLRRQCDIDSSVSVVHDIRL 604

Query: 589  RCVYIASDGGRVCRPL-VIADKGISRIKEHHMKELLDGV---RSFDDFLREGLIEYLDVN 644
            + + + +D GR  RPL ++ D    +IK+ H++ L +      ++++ +  G IEY+D  
Sbjct: 605  KELRLYTDYGRCTRPLFIVEDDQKLKIKKQHIELLTEKDVTGYTWNELVTSGFIEYVDTE 664

Query: 645  EENNALIALYEGDATP-------------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
            EE   +I++   D                + TH EI P  ILG+ A +IP+P HNQSPRN
Sbjct: 665  EEETTMISMTIDDLVAGRHAVEQNTGVAINYTHCEIHPSMILGICASIIPFPDHNQSPRN 724

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQ AMGKQAMG    N   RMD+L Y++ YPQ+PL+TTR +E + + +L AG NA VA+
Sbjct: 725  TYQSAMGKQAMGMYVTNYQIRMDTLGYVMFYPQKPLVTTRAMEYLHFRELPAGCNAVVAI 784

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM 811
            M Y+GY+ ED+++MN+S++DRG  R +  + +    +K  + + +   RPDR      R 
Sbjct: 785  MCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRH 844

Query: 812  QVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSAR 870
                        LDDDGL  PG  +  +D+ I K +PL E   +++S       R+    
Sbjct: 845  GTYDK-------LDDDGLICPGTRVSGDDIIIGKTAPLPEDDTAVLS------KRFSKKD 891

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             +      ET ++D+V L ++  G   +K  +R  R P++GDKFSSRHGQKG  G    Q
Sbjct: 892  CSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQ 951

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF+  GI PD+I+NPH  PSRMT+G+++E + GK     G+    + F        T
Sbjct: 952  EDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPFTPV-----T 1006

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
             E IS  L K G+   G +++Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP 
Sbjct: 1007 AEDISSMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPV 1066

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGR+R+GGLR GEMERDC++++GA+  + ERLM  SD + + VC+ CGL+  
Sbjct: 1067 QILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAV 1126

Query: 1111 YNHKLKAGICSTCKNGDNISS---MKLPYACKLLIQELQSMNIVPRL 1154
             N K +   C  CKN    +S   + +PYACKLL QEL SM I PRL
Sbjct: 1127 ANLKNQTFEC--CKNPSERTSVVQVMVPYACKLLFQELMSMAIAPRL 1171


>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
            IC-167]
 gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
          Length = 1131

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1144 (36%), Positives = 652/1144 (56%), Gaps = 61/1144 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-PSIFLRFKDVRIG 88
            D++ L+  +++  GLV+  +DSFN FV+  +++IV+  +     ID   + ++F DV +G
Sbjct: 31   DRWTLVESYVRSYGLVRHQIDSFNDFVDRKLKEIVQEFN-----IDLGDVKVKFIDVEVG 85

Query: 89   QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE-YVQGSHTEKTTMEKNDVVIGRIPI 146
            +P      GV   + P   RL ++TYAAP+ + +  Y+ G    +T      V +G +PI
Sbjct: 86   KPRFKEPTGVENVIYPMEARLRNITYAAPMRLKVMLYINGEEYTET------VPLGDLPI 139

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            M++S  C LYG     + +  E P DPGGYFII G+E+V++ QE L+ N+ I D D++G 
Sbjct: 140  MVKSKYCNLYGLKPQAIVKKLEDPNDPGGYFIINGSERVVVSQEDLALNKPIYDYDERGA 199

Query: 207  IN---ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
                 A + S     ++  V++  K G +Y+ + +   ++P  VVM+A+G+E DQ++   
Sbjct: 200  TRIPRAKIISMGPGYRTTVVVEYHKDGVIYVQIPKIPTRMPFPVVMRALGLEKDQDIALA 259

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
            V  +      LL S E    +   T ++A +Y+    +R   G P   R  RA   L   
Sbjct: 260  VSDNDEIQRELLASFEMAIQI-APTVDEARDYIG---RRIVLGHPREIRIQRALEYLDKY 315

Query: 323  FLANV-PVHNNNFR-PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
            FL ++    ++  R  K   +   +  ++E        DDKD++ NKR+ L G L++ LF
Sbjct: 316  FLPHLGTTPDDKVRLSKAIELGQAVAGVIELYKGWRQPDDKDHMSNKRVRLVGDLLAQLF 375

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
              +F   + +++  ++    + SR    +L   +  D I+  L+  LSTGN+        
Sbjct: 376  RSIFAQFVQDLRNQLE---KQYSRGKIPELRTIVRADIISDRLKHALSTGNW-----VGG 427

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G+TQ+L R +++ T+ H+ RV     +++     R L P+QWG LC  +TPEG+ CGL
Sbjct: 428  KTGVTQMLDRTNYVSTISHLRRVVSSLSRTQPHFEARDLHPTQWGRLCAIETPEGQNCGL 487

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKN+ALM  VT   +E  + ++   +GV ++      E+   N   V+ NG ++G HR P
Sbjct: 488  VKNMALMATVTVGVDEASVEAMLREMGVINVLDARRNEIKGAN---VLLNGRLIGIHRDP 544

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK 620
            +   + +R+ RR G I   V+V   EK   V +  DGGR+ RPL+I   G  R+ + H++
Sbjct: 545  QALVNAIREARRRGDINGEVNVGYIEKLNEVRVNCDGGRLRRPLLIISNGKLRLTKEHIE 604

Query: 621  ELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-----THIEIEPFTILGV 675
            +L  G  ++DD ++ G++EYLD +EE NA++ +  GD T D      TH+EI P  +LG 
Sbjct: 605  KLRSGEWTWDDLVKNGIVEYLDADEEENAMVTI--GD-TKDVDLSKYTHMEIIPSIMLGA 661

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
            +A +IPY  HNQSPRN Y+ AM KQ++G    N   R+DS  +LL+YP+RPL+TTR +EL
Sbjct: 662  VAHIIPYSEHNQSPRNIYEAAMAKQSLGFPYSNYRYRIDSRGHLLLYPERPLVTTRGLEL 721

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            +GY    +GQNA +A++S+ GY IEDA+++NK++++RG  R I  + Y     +Y    +
Sbjct: 722  IGYSMRPSGQNAVLALVSFMGYSIEDAVMINKAAIERGMFRSIFYRSYETEAMRYPMGEN 781

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            DRI  P  T       +   H       LD+DG+  P   +   +V I K SP     ++
Sbjct: 782  DRITIPPPTVRDYRGAEAYAH-------LDEDGIVPPEVFVSSKEVLIGKISPPRFYSAL 834

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                 Q    ++    T +   GE  +VD+V +     G   IK  +R  R PELGDKF+
Sbjct: 835  AE--SQLAGEWKDNSITVR--RGEKGIVDQVLITESSEGFKLIKVKVRELRIPELGDKFA 890

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G IV  ED PF+E GI PD+++NPH  PSRMT+G+++E + GK     G  
Sbjct: 891  SRHGQKGVVGMIVPMEDMPFTENGITPDVVINPHALPSRMTIGQLLEAIAGKTAALYGTL 950

Query: 976  HYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
               + F G P G      +I   L+K G+ ++G++ +YSG+ G  L A IF+G +YYQKL
Sbjct: 951  VDATPFEGVPEG------TIRSMLMKAGYRWSGRETMYSGLMGTRLDADIFIGVVYYQKL 1004

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
             HMV DK+HAR +GP  +LTRQPTEGR+R GGLR+GEMERD LIA+GA+ L+ ER++ SS
Sbjct: 1005 HHMVADKIHARATGPMQILTRQPTEGRSREGGLRLGEMERDVLIAHGAAALLHERMVESS 1064

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D + + VC  CG++ +++   K  IC    +   I+ + +PYA KLL+QEL S+ I P+L
Sbjct: 1065 DKYVMYVCEDCGMMAWWDDFKKRPICPIHGDKGRIAKVIVPYAFKLLLQELISLGIYPKL 1124

Query: 1155 KLAE 1158
            KL+E
Sbjct: 1125 KLSE 1128


>gi|268323371|emb|CBH36959.1| DNA-directed RNA polymerase subunit B [uncultured archaeon]
          Length = 1131

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1170 (36%), Positives = 652/1170 (55%), Gaps = 78/1170 (6%)

Query: 28   VVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---NDRIVSGIDPS-----IF 79
            ++D+      +LK   +V+  LDSFNYF++ GI++I+      +  +SG D       + 
Sbjct: 1    MLDRSVFSKAYLKREKIVQHQLDSFNYFLDEGIQRIIDELPYTETSISGEDEEKGKYKLG 60

Query: 80   LRFKDVRIGQP-SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
            ++F  + +G P +   DG  E + P   RL ++ Y+API+++++ V+   + +  + +++
Sbjct: 61   VKFGKITVGIPKAREADGSYEDIFPSQARLRNLNYSAPIILDMQLVKKYESGEIEIVRDE 120

Query: 139  --VVIGRIPIMLRSCRCVL--------YGKDEAELA-------RLGECPLDPGGYFIIKG 181
              V IG +PIML+S RC L         GKD +E           GE PLDPGGYFII G
Sbjct: 121  EAVAIGELPIMLKSNRCNLSKVVIQEKLGKDLSEPEYEDWLKNEAGEDPLDPGGYFIING 180

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK---GNINASVTSSTETVKSKTVIQM-EKGKMYLLLNQ 237
            +E V++  E L+ NR+ ++ ++K     + + V S  +  +    +++ +KG + +    
Sbjct: 181  SEHVIITLEDLAPNRIFVNFEEKYGSKGVVSKVFSLNQGFRVPIRVEISKKGILEVSFPA 240

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
              +KI  M +++A+G+ESD+E+++ V  DP+    +L +IEEC   D+ TQE+A+E L  
Sbjct: 241  VGRKIQFMTLIRALGLESDEEIIKAVSDDPQIVKYVLENIEEC---DVDTQEEAIEKLGR 297

Query: 298  KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
            K+  +        RE R   IL   FL     H +    K +++  M     E  L K  
Sbjct: 298  KIAPT---QAREYRERRVNYILDRYFLP----HLDTKIAKAYFIGRMAESCYELYLGKRG 350

Query: 358  MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS-RSSRFDLSQFIVR 416
              DKD+  NKRL+L+G LV    EDLF+   +++ + +   L + + RS    ++  I  
Sbjct: 351  EGDKDHYANKRLKLAGDLV----EDLFRVSFTKLTRDMRYQLERANMRSRELKIATAIRS 406

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
            D +T  +   L+TGN+        R G++Q+L R ++I TL H+ R+     +S+     
Sbjct: 407  DVLTERIVHALATGNW-----VGGRAGVSQLLERSNYIATLSHLRRIISPLSRSQPHFEA 461

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L P+QWG +CP +TPEG  CGLVKN + M  ++  E+E     + Y LGV  +     
Sbjct: 462  RDLHPTQWGKICPSETPEGPNCGLVKNFSQMVEISVGEDEKSFKDILYELGV--IPPARS 519

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             E+   +   V  NG  +G    P+ F D +RK RR+ +I   V++     Q  + I SD
Sbjct: 520  LEISAESRTRVFVNGDFIGFSTEPEIFVDAVRKKRRSDEISTQVNIAYYRDQSDIIINSD 579

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR  RP+++ +     + E  +++L  G  +FDD +  G+IEYLD  EE NALIAL E 
Sbjct: 580  RGRARRPVMVVENKTPLLTESQIEKLRKGEMNFDDLVSVGVIEYLDAEEEENALIALNES 639

Query: 657  DATPD----TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
            D T +     TH+E++P  ILG++AGLIPYP HN SPRNT  CAM KQ++G    N   R
Sbjct: 640  DLTKEGGNGYTHLELDPSLILGIVAGLIPYPDHNSSPRNTMGCAMLKQSLGLSTANYKTR 699

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
             D+  +LL  PQ+PL+TTRT +L+ + +  AGQN  VAV+SY GY++EDA+++N++++DR
Sbjct: 700  ADTRTHLLHSPQKPLVTTRTADLIQHGRRPAGQNFVVAVLSYEGYNMEDALILNQAAIDR 759

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G GR    + Y    ++Y     D    PD    G                LDD G+   
Sbjct: 760  GLGRSHFFRTYEGEERRYPGGEEDIFEIPDVEIVGVRSHDAYQQ-------LDDAGIINS 812

Query: 833  GEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
               + PNDV I K SP   LE    ++SP  + D+     R   +G       VD V L 
Sbjct: 813  EVEVVPNDVLIGKTSPPRFLEETTELLSPLERRDTSI-CTRANERGR------VDSVVLM 865

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
               +    IK  +R  + PE+GDKF+SRHGQKGV G I + ED PF+E GI PD+I+NPH
Sbjct: 866  ESSSNRRLIKVAVRDQKIPEVGDKFASRHGQKGVIGLIARPEDMPFTEGGIIPDMIINPH 925

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMTVG ++E++GGK G   GR+  GSAF   SG  +    + + LV+ GFS  G++
Sbjct: 926  AIPSRMTVGHVLEMIGGKVGALEGRYIDGSAF---SGEKEV--DLRDALVRAGFSDTGRE 980

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            M++ G+ G  + A +F+G +YYQKL H+V  KMHAR  GP  +LTRQPTEG+AR GGLR 
Sbjct: 981  MMWDGLKGTKIDADVFVGVVYYQKLYHLVSAKMHARARGPVQILTRQPTEGKAREGGLRF 1040

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERD LI YGA++ + +RL+  SD     VC  CG++   + K  +  C  C    +I
Sbjct: 1041 GEMERDVLIGYGAAITLKDRLLNESDRVVELVCGNCGMIACRDMKTGSSYCPNCGADTDI 1100

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
              +++ YA KLL+ E++++ I PRL+L EA
Sbjct: 1101 YPVEMSYAFKLLLDEMKALGIAPRLELEEA 1130


>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1 ERTm2]
          Length = 1137

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1164 (36%), Positives = 662/1164 (56%), Gaps = 77/1164 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-SGIDPS--------IFL 80
            D ++++  F K +GLV+Q LDSFN F+ + ++++V  N +IV     P+          +
Sbjct: 8    DCWKVVSAFFKDKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLMAHSPTGEEEKARKYTI 67

Query: 81   RFKDVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTME 135
             FK + + +P      DG +  + P+  R+  +TY+A + ++I   E++     E  T +
Sbjct: 68   EFKQIYVSKPPTITEPDGRTSPMFPNDARVRSLTYSASLYIDIVKTEHIGDEEVESRTYK 127

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            +  + IG IPIMLRS  CV    D+ ++ R+ EC  D GGYFI+ G+EKVL+  E+++ N
Sbjct: 128  R--MPIGSIPIMLRSLYCVYSNTDDKDMNRIEECTYDQGGYFIVNGSEKVLIAHERMASN 185

Query: 196  RVIIDTDKKGN---INASVTS---------STETVK--SKTVIQMEKGKMYL--LLNQFV 239
             V I      +     A + S         S+ T++  +++      G  +L  LL    
Sbjct: 186  LVYIFKKAPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVARSSDNASGGGYFLRALLPHAK 245

Query: 240  KKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
            + +P++V+ +A+G  SD+E+++ +     D    ++L PSIEE     I  Q  AL+Y+ 
Sbjct: 246  QDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEA--FVIQDQGVALDYIG 303

Query: 297  GKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
             +V  + F      R   A  + +  FL +V         K + +   + +++   L + 
Sbjct: 304  KRVAPAGFSK--EKRIKFAKDLFQREFLPHVGTKEFCETKKAYLLGYTINKLLMVALGRR 361

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
            + +D+D+ G KRL+L+G L++ LF  LFK M +E+ K +   +     +   +L   +  
Sbjct: 362  SEEDRDHYGRKRLDLAGPLMAGLFRMLFKKMSNELAKYMQRCIDG---NKDLNLIVGLRT 418

Query: 417  DSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
             ++T GL  +L+TGN+  +   M  R G+ QVL R ++I TL H+ RV+    +  K++ 
Sbjct: 419  STLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDGKLAK 478

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  S WGM+CP +TPEG+ACGLVKN ALM+H++       ++ L    G+E LE +S
Sbjct: 479  PRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHISVGSNSSIVVELLEECGLEGLEEVS 538

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
               +      LV  NG  +G HR P      ++ LRR+G++   + +  + +++ + I +
Sbjct: 539  PTAIAGATKVLV--NGSWVGVHRSPDDLIGTLKYLRRSGELSSEIGIVRDLREKEIRINT 596

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            DGGR CRPL I +KG+ RI EH ++       ++D+ + +G +E+LDV EE  A+IA+  
Sbjct: 597  DGGRACRPLFIVEKGVLRI-EHFLEANRHRAFTWDELMADGCVEFLDVEEEETAMIAVKT 655

Query: 656  GDATPDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
             D        TH EI+P T+LGV A ++P+P HNQSPRNTYQ AMGKQAMG  A N L R
Sbjct: 656  SDLRNTEIMYTHCEIQPATMLGVCASVVPFPDHNQSPRNTYQSAMGKQAMGMYATNFLMR 715

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MDSL  +L YPQ+PL+ T+++  + + +L +GQNA VA+  YSGY+ ED++VMN+ ++DR
Sbjct: 716  MDSLSNVLCYPQKPLVITQSMNFLQFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDR 775

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R    + Y+ +  +      +  ++PDR     +RM+  ++  L     D DGL  P
Sbjct: 776  GLFRSFFYRTYSDMESRTKPEEQECFMKPDRRS--VQRMKNANYEKL-----DIDGLVPP 828

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +   DV I K        ++ +P G     Y+ A  T +G   E+ VVDRV L + K
Sbjct: 829  GTRVSGEDVLIGK--------AVSTPDG-----YKDASTTMRGT--ESGVVDRVILTT-K 872

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +G    +  +R  R P++GDKF+SRHGQKG  G ++  ED PF+  GI PD+I+NPH  P
Sbjct: 873  DGYRYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPEDMPFTADGITPDIIINPHAIP 932

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMT+G ++E L GK     G+    + F   S     VE ISE L KHG+   G +++Y
Sbjct: 933  SRMTIGHLVECLLGKVSCMTGKEGDATPFTGLS-----VEEISEELQKHGYQKRGFEVMY 987

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            SG TG  +++ IF+GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEM
Sbjct: 988  SGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRSRDGGLRFGEM 1047

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERDC+I++GA+M + ERL   SD FEV +C  CGL    N      +C  C    N+S +
Sbjct: 1048 ERDCMISHGAAMFLKERLCDVSDKFEVFICNDCGLFCAGNKDRGLYLCQLCGTRTNVSMV 1107

Query: 1133 KLPYACKLLIQELQSMNIVPRLKL 1156
             +PYA KLL+QE+ +M I  +++L
Sbjct: 1108 YMPYAFKLLVQEMMTMCISVQMRL 1131


>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
            50818]
          Length = 1193

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1203 (36%), Positives = 664/1203 (55%), Gaps = 119/1203 (9%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP-----------SIFL 80
            + ++  +   +GLV+Q LDSF++F+  GI+  V  +  +     P           S  +
Sbjct: 23   WDVINAYFNEKGLVRQQLDSFDHFIQYGIQDAVEKSPALEIEAKPQYTTNEFEEPPSYSV 82

Query: 81   RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV----QGSHTEKTTME 135
            +F +V + +P+    DG S  L P+  RL ++TY + + V  E      Q S  E TT  
Sbjct: 83   KFCEVSLSKPTHYEEDGTSHFLYPNDARLRNLTYWSEMFVEAEETYRETQDSEPETTT-- 140

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
               V +G+IPIMLRS  C+L GK   +L  L ECPLDPGGYFII G+EKVLL QE+++ N
Sbjct: 141  -TSVHLGKIPIMLRSKFCLLNGKLNDDLYNLNECPLDPGGYFIINGSEKVLLAQEKMAPN 199

Query: 196  RVIIDTDKKGNI-----NASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKK 241
             V +   K           SV   +    S  ++++ +G          +++ L    + 
Sbjct: 200  TVFVFEKKDPKYLFVTEIKSVLERSPRPPSSLLVKLLRGSQSAARSGPVLHVTLPYVRQD 259

Query: 242  IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            +P++VV +A+G E D+ +++ +     D     +L PS++E     I  ++ AL++    
Sbjct: 260  VPVVVVFRALGFEDDRSILEHIIYDFNDMEMMEMLKPSLDEA--FVIQNRDVALDW---- 313

Query: 299  VKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
            + +    SP   +E R   A  IL+   L ++ +  +    K F++  M+ R ++A L +
Sbjct: 314  IGKRAVQSPAISKERRIHYAKDILQKELLPHIGLGPHCETKKAFFLGYMVHRTLQAALRR 373

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415
              +DD+D+ GNKRL++SG L   LF  LF+ +  E++     I  K +RS    LS  + 
Sbjct: 374  RQLDDRDHYGNKRLDMSGPLTGFLFRTLFRNVTKELRS---YIQKKLNRSEEIKLSAGLN 430

Query: 416  RDSITVGLERTLSTGNF--DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473
               I  GL  + +TGN+    K F+  R G++QVL RL+F  TL H+ R++   E++ K+
Sbjct: 431  SKQIESGLRYSFATGNWGTQAKAFEA-RAGVSQVLNRLTFASTLSHLRRLNSPIERTGKI 489

Query: 474  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL 533
            + PR L  + WG +CP +TPEG A GLVKNLALM  VT   +  P++ L   +G+E L+ 
Sbjct: 490  AKPRQLHNTHWGYICPAETPEGHAVGLVKNLALMASVTVGGDATPVLELLNSIGMESLDD 549

Query: 534  LSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR--AGKIGEFVSVFVNEKQRCV 591
            L+   +    + + + NG  +G H  P+     +   RR  A  I   VS+F + ++R +
Sbjct: 550  LASRSVIRDTTKIFV-NGAWVGIHMEPEEVVRNLHLCRRTQADMIQSEVSIFRDIREREI 608

Query: 592  YIASDGGRVCRPLVIADK---------GISR-----IKEHHMKEL--------LDGVRSF 629
            ++ SD GR+ RPL+I +K         G  +     +K+ H+++L         +   S+
Sbjct: 609  HVYSDSGRLTRPLLIVEKPELDDTFHDGTQQQQTLALKKQHLEKLQSAAMQNAFEATYSW 668

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT--------------THIEIEPFTILGV 675
             D +REGL+EY+DVNEE+  +IA+     TPD               TH EI P  ILG+
Sbjct: 669  SDLVREGLVEYIDVNEEDTTMIAM-----TPDDFEMSDEQDLYCTTYTHCEIHPSMILGI 723

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             A +IP+P HNQSPRNTYQ AMGKQAMG    N   R+D+L ++L YPQ+PL+ TR+++ 
Sbjct: 724  CASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHIRLDTLAHVLYYPQQPLVKTRSMDY 783

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + +  L AG NA VA+M Y+GY+ ED+++MNK ++DRG  R +  + Y +  +    +T 
Sbjct: 784  MYFKDLPAGINAIVAIMCYTGYNQEDSVIMNKCAVDRGLFRSVFYRSYASSEE----NTG 839

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL----ET 851
              +++ ++  P  E    + +SN   L  +DDGL APG  +  +D  I +   L    E 
Sbjct: 840  REVIKFEK--PSRETCAGMRNSNYGKL--EDDGLIAPGTSVTGDDAIIGRTMELPPNAEA 895

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
            R S ++       R+    ++      E  ++D+V +     G   +K  +R  R P++G
Sbjct: 896  RDSRLA-------RFEKLDKSVFLRASENGIIDQVMVAMGPKGTRFVKIRVRSIRVPQIG 948

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKG CG    QED PF+ +GI PD+I+NPH  PSRMT+G +IE L GK G  
Sbjct: 949  DKFASRHGQKGTCGMQYSQEDMPFTCQGITPDIIVNPHAIPSRMTIGHLIECLLGKVGCL 1008

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G F   + F E      TV  ++  L  H F   G +++Y+G TG  +QA +F GP YY
Sbjct: 1009 EGAFGDATPFIEV-----TVNEVASALEAHNFHKYGNEVLYNGFTGRKMQAQVFFGPTYY 1063

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+LKHMV DK+HAR  GP  +LT+QP EGR+R+GGLR GEMERDC+IA+G++  + ERL 
Sbjct: 1064 QRLKHMVDDKIHARARGPLQILTKQPVEGRSRDGGLRFGEMERDCMIAHGSAQFLRERLF 1123

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
              SDP+ + VC +CGL+   N       C  C N   +S +++PYACKLL QEL SM I 
Sbjct: 1124 EVSDPYRIHVCDICGLICIANLNKNELECKACSNTTRVSQVRIPYACKLLFQELMSMCIA 1183

Query: 1152 PRL 1154
            PR+
Sbjct: 1184 PRI 1186


>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
 gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
          Length = 1227

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1231 (36%), Positives = 664/1231 (53%), Gaps = 134/1231 (10%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
            AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++           
Sbjct: 24   API-TAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTES 82

Query: 72   SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE-------- 122
              I     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++        
Sbjct: 83   DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVD 142

Query: 123  -------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
                   Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D GG
Sbjct: 143  VPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGG 202

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGK 230
            YFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K
Sbjct: 203  YFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVK 258

Query: 231  MY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPS 276
            +Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P 
Sbjct: 259  LYGREGSSARTVKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 318

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         
Sbjct: 319  VED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR 374

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q
Sbjct: 375  KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQ 434

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARL 451
            +TV+        ++ F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R 
Sbjct: 435  RTVE-------EANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY 487

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++
Sbjct: 488  TYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS 547

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    D +R LR
Sbjct: 548  VGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMDTLRTLR 605

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL-- 623
            R G I   VS+  + +++ + I +D GRV RPL I +   S      ++++ H+ +L+  
Sbjct: 606  RKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHINKLMAT 665

Query: 624  ---DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT---------- 662
               D    F+D         L EGL+EY+D  EE   LIA+   D  P            
Sbjct: 666  EYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPPAVNEDEPMVDD 725

Query: 663  ----------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
                            TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG   
Sbjct: 726  LDPAKRIRAVQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 785

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN
Sbjct: 786  TNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 845

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDD
Sbjct: 846  QSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDD 898

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL APG  +   DV I K +P+      +   GQ  + +     +      E  +VD+V
Sbjct: 899  DGLIAPGVRVSGEDVIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQV 955

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+
Sbjct: 956  LITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLII 1015

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L  K     G     S F +      TVE IS  L +HG+   
Sbjct: 1016 NPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISRLLREHGYQSR 1070

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG
Sbjct: 1071 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGG 1130

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTC 1123
            LR GEMERDC+IA+GA+  + ERLM +SD F V VC  CGL+      NH      C  C
Sbjct: 1131 LRFGEMERDCMIAHGAASFLKERLMEASDAFRVHVCGNCGLMSVIAKLNHNQFE--CKGC 1188

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1189 DNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1219


>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
 gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; AltName: Full=B150; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide
 gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
 gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
            The Inhibitor Alpha Amanitin
 gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
 gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
 gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
 gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
 gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
 gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Matched Nucleotide
 gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Mismatched Nucleotide
 gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
 gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
 gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
 gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
 gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
 gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With Substrate
            Analogue Gmpcpp
 gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
 gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
 gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dgtp
 gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
            Gmpcpp
 gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            2'dutp
 gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            Gmpcpp
 gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dutp
 gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
            112006
 gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
 gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
 gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
 gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
 gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
            Complex
 gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
            Scaffold
 gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
            Delta Virus-Derived Rna Stem Loop
 gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
            Elongation Complex
 gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
            With The Inhibitor Alpha-Amanitin
 gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
            Mismatch
 gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
 gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
            Active Site
 gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
 gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
            Mismatch And A Frayed Rna 3'-Uridine
 gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
 gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
 gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
            Mismatch And A Frayed Rna 3'-Guanine
 gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            D
 gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            E
 gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
 gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
 gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
 gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
 gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
 gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
            Subunit
 gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 1)
 gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 2)
 gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Atp
 gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Gtp
 gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            Containing A 5br- U
 gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
            Containing A 2[prime]-Iodo Atp
 gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
            Vp16-Mediator-Pol Ii-Tfiif Assembly
 gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid
 gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid
 gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid
 gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid And Soaked With Gmpcpp
 gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid
 gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid
 gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
 gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
 gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
 gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
            Tfiib Complex
 gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
 gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
 gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
 gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
 gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
 gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
 gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
 gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1224

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1230 (36%), Positives = 667/1230 (54%), Gaps = 132/1230 (10%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
            +AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++          
Sbjct: 22   SAPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE 80

Query: 72   -SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE------- 122
               I     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++       
Sbjct: 81   SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAI 140

Query: 123  --------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
                    Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D G
Sbjct: 141  DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
            GYFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + 
Sbjct: 201  GYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQV 256

Query: 230  KMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            K+Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P
Sbjct: 257  KLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKP 316

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++        
Sbjct: 317  CVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
             K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LFK +  ++    
Sbjct: 373  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLAR 450
            Q+TV+        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R
Sbjct: 433  QRTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNR 485

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ +
Sbjct: 486  YTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCI 545

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +   +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R L
Sbjct: 546  SVGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTL 603

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL- 623
            RR G I   VS+  + +++ + I +D GRV RPL I +   S      ++++ H+ +L+ 
Sbjct: 604  RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMA 663

Query: 624  ----DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT--------- 662
                D    F+D         L EGL+EY+D  EE + LIA+   D  P           
Sbjct: 664  TEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDV 723

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 724  DPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 783

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 784  NYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 843

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDDD
Sbjct: 844  SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDD 896

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            GL APG  +   DV I K +P+      +   GQ  + +     +      E  +VD+V 
Sbjct: 897  GLIAPGVRVSGEDVIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVL 953

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+N
Sbjct: 954  VTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIIN 1013

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G
Sbjct: 1014 PHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRG 1068

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGL
Sbjct: 1069 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1128

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCK 1124
            R GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL+      NH      C  C 
Sbjct: 1129 RFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFE--CKGCD 1186

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1187 NKIDIYQIHIPYAAKLLFQELMAMNITPRL 1216


>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
 gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
          Length = 1142

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1179 (36%), Positives = 639/1179 (54%), Gaps = 126/1179 (10%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV    +I         SG     P   L+F
Sbjct: 29   VISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHASGEIENPPRYLLKF 88

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E    +     
Sbjct: 89   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEPVETQHQKTF 148

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L    + +L+ L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 149  IGKIPIMLRSTYCLLNSLTDRDLSELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208

Query: 201  TDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIP 243
              K      K    + +  S+    +  V  + +G           ++  +L    ++IP
Sbjct: 209  QMKDSKFVFKAECRSCLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIP 268

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IM+V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  
Sbjct: 269  IMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR-- 324

Query: 301  RSTFGSPPNDREGRAFSILRDVF----LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
                G+ P   + R     R++     L +V V +     K +Y+  M+ R++ A L + 
Sbjct: 325  ----GAHPGVTKERRIKYSREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRR 380

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQ 412
             +DD+D+ GNKRL+L+G L++ LF  LF+ +  EV    QK +D       R   F+L  
Sbjct: 381  ELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKEVRMYAQKFID-------RGKDFNLEL 433

Query: 413  FIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
             I    IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ RV+    +  
Sbjct: 434  AIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDG 493

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K++ PR L  + WGM+CP +TPEG A GLVKNLALM++++   +  P++       +E+L
Sbjct: 494  KLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENL 553

Query: 532  ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRC 590
            E ++   +       V  NG  +G HR P    + +RKLRR   I    VS+  + + R 
Sbjct: 554  EEIAPSAIAEATKIFV--NGCWVGIHRDPDQLMNTLRKLRRQMDIIVSEVSMVRDIRDRE 611

Query: 591  VYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
            + I +D GR+CRPL+I +     +K  H   +KE      S+ D +  G++EY+D  EE 
Sbjct: 612  IRIYTDAGRICRPLLIVEDQKLLLKRRHIDSLKEREYNNYSWQDLVASGVVEYIDTLEEE 671

Query: 648  NALIALYEGDATPDT------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQC 695
              ++++     TPD             TH EI P  ILGV A +IP+P HNQSPRNTYQ 
Sbjct: 672  TVMLSM-----TPDDLQDKGFAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 726

Query: 696  AMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 755
            AMGKQAMG    N   RMD+L ++L YP +PL TTR++E + + +L AG N+ VA+MSY+
Sbjct: 727  AMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINSIVAIMSYT 786

Query: 756  GYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVH 815
            GY+ ED+I++N S++DRGF R +  + Y     K      ++  +P R      R     
Sbjct: 787  GYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQGMR----- 841

Query: 816  HSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG 875
              N +   LDDDG+ APG  +  +DV I K   L      +  T +  ++ R A    + 
Sbjct: 842  --NAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTK-RDASTFLR- 897

Query: 876  PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF 935
             + ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF
Sbjct: 898  -NSETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPF 956

Query: 936  SERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESIS 995
            +  G+ PD+I+NPH  PSRMT                                     IS
Sbjct: 957  TADGLTPDIIINPHAIPSRMT------------------------------------KIS 980

Query: 996  ETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTR 1055
              L ++G+   G +++Y+G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L R
Sbjct: 981  NLLQEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 1040

Query: 1056 QPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKL 1115
            QP EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+   +C +CGLL   N + 
Sbjct: 1041 QPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLAIANLRN 1100

Query: 1116 KAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                C  C+N   IS ++LPYACKLL QEL SM+I PR+
Sbjct: 1101 NTFECKGCRNKTQISQIRLPYACKLLFQELMSMSIAPRM 1139


>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1224

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1229 (36%), Positives = 667/1229 (54%), Gaps = 132/1229 (10%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
            AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++           
Sbjct: 23   API-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTES 81

Query: 72   SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE-------- 122
              I     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++        
Sbjct: 82   DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVD 141

Query: 123  -------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
                   Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D GG
Sbjct: 142  VPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGG 201

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGK 230
            YFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K
Sbjct: 202  YFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVK 257

Query: 231  MY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPS 276
            +Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P 
Sbjct: 258  LYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 317

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         
Sbjct: 318  VED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR 373

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LFK +  ++    Q
Sbjct: 374  KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLMAQLFKTLFKKLTKDIFRYMQ 433

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARL 451
            +TV+        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R 
Sbjct: 434  RTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY 486

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++
Sbjct: 487  TYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS 546

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R LR
Sbjct: 547  VGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLR 604

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL-- 623
            R G I   VS+  + +++ + I +D GRV RPL I +   S      ++++ H+ +L+  
Sbjct: 605  RKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHVGKLMAT 664

Query: 624  ---DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT---------- 662
               D    F+D         L EGL+EY+D  EE + LIA+   D  P+           
Sbjct: 665  EYQDIEGGFEDAEEYTWSTLLNEGLVEYIDAEEEESILIAMQPEDLEPNEGSEENDLDVD 724

Query: 663  --------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                          TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 725  PAKRIRVARHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 784

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+S
Sbjct: 785  YNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQS 844

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDDDG
Sbjct: 845  SIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDDG 897

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            L APG  +   DV I K +P+      +   GQ  + +     +      E  +VD+V +
Sbjct: 898  LIAPGVRVSGEDVIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVLV 954

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+NP
Sbjct: 955  TTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINP 1014

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G 
Sbjct: 1015 HAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRGF 1069

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR
Sbjct: 1070 EVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLR 1129

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCKN 1125
             GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL+      NH      C  C N
Sbjct: 1130 FGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFE--CKGCDN 1187

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1188 KIDIYQIHIPYAAKLLFQELMAMNITPRL 1216


>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS 8797]
          Length = 1220

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1229 (35%), Positives = 667/1229 (54%), Gaps = 130/1229 (10%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
            +AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  + R++          
Sbjct: 18   SAPI-TAEDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSRLILEQLAQHTTE 76

Query: 72   -SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE------- 122
               I     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++       
Sbjct: 77   ADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVKKRTYEAI 136

Query: 123  --------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
                    Y   +   +   E+  V IGR+PIMLRS  C L    E++L +L ECP D G
Sbjct: 137  DVPGRDLKYELIAEESEDDSERGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMG 196

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
            GYFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + 
Sbjct: 197  GYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQV 252

Query: 230  KMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            K+Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P
Sbjct: 253  KLYGREGSSSRTIKATLPYIKQDIPIVIIFRALGVIPDGEILEHICYDVNDWQMLEMLKP 312

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++        
Sbjct: 313  CVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 368

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
             K F++  M+ R++   L++   DD+D+ G KRL+L+G L+  LF+ LF+ +  ++    
Sbjct: 369  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYM 428

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLAR 450
            Q+TV+        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R
Sbjct: 429  QRTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNR 481

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ +
Sbjct: 482  YTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSSI 541

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +   +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R L
Sbjct: 542  SVGTDPMPIITFLSEWGLEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTL 599

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL- 623
            RR G I   VS+  + +++ + I +D GRV RPL I +   +      ++++ H+ +L+ 
Sbjct: 600  RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHIAKLMA 659

Query: 624  -------DGVRSFDDF-----LREGLIEYLDVNEENNALIALYEGDATP----------- 660
                    G+   D++     L EGL+EY+D  EE   LIA+   D  P           
Sbjct: 660  TEYQDIEGGLDEADEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPVIEEENPIDDM 719

Query: 661  -------------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 720  DPAKRIKASQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 779

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 780  NYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 839

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDDD
Sbjct: 840  SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDD 892

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            GL APG  +   D+ I K +P+      +   GQ  + +     +      E  ++D+V 
Sbjct: 893  GLIAPGVRVSGEDIIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIIDQVL 949

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G    +ED PF+  GI PDLI+N
Sbjct: 950  VTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYSREDMPFTAEGIVPDLIIN 1009

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G
Sbjct: 1010 PHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYHSRG 1064

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGL
Sbjct: 1065 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1124

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKN 1125
            R GEMERDC+IA+GA+  + ERLM +SD F V +C  CGL+     KL      C  C N
Sbjct: 1125 RFGEMERDCMIAHGAAAFLKERLMEASDSFRVHICGNCGLMSVIA-KLSHNQFECKGCNN 1183

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              +I  +++PYA KLL QEL +MNI PRL
Sbjct: 1184 KIDIYQIRIPYAAKLLFQELMAMNITPRL 1212


>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
          Length = 1954

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1149 (36%), Positives = 645/1149 (56%), Gaps = 99/1149 (8%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVR--------ANDRIVSGI--DPSIFL-RFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV         A  +  SG   +P+ +L +F  + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGEIENPTRYLLKFDQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
            + +P+    DG    + P+  RL ++TY+AP+ V+I   + V+G    +T  +K    IG
Sbjct: 93   LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKT--FIG 150

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            +IPIMLRS  C+L    + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + 
Sbjct: 151  KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 210

Query: 203  KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
            K G       I + +  S+    +  V  M +G           ++  +L    ++IPIM
Sbjct: 211  KDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIM 270

Query: 246  VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            +V +A+G  +D+++++ +     DP    ++ PS++E     +  Q  AL ++  +  R 
Sbjct: 271  IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 328

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G   + R   A  IL+   L +V V +     K +++  M+ R++ A L +  +DD+D
Sbjct: 329  --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRD 386

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
            + GNKRL+L+G L++ LF  LFK ++ EV    QK +D       R   F+L   I    
Sbjct: 387  HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFID-------RGKDFNLELAIKTKI 439

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR
Sbjct: 440  ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 499

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++  
Sbjct: 500  QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 559

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
             + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R + I +D
Sbjct: 560  AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 617

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
             GR+CRPL+I + G   +++HH+  L D  R ++++     +  G++EY+D  EE   +I
Sbjct: 618  AGRICRPLLIVEGGSLLLRKHHIDMLKD--RDYNNYGWQVLVASGVVEYIDTLEEETVMI 675

Query: 652  ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
            A+   D   D         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 676  AMTPYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 735

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 736  VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 795

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            ++N S+++RGF R +  + Y     K      ++  +P+R      R       N L   
Sbjct: 796  ILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMR-------NALYDK 848

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG----- 878
            LD+DG+ APG  +  +DV I K        +I  P  +TD       + +   DG     
Sbjct: 849  LDEDGIIAPGLRVSGDDVVIGK--------TITLP--ETDDDLDGTTKRFTKRDGSTFLR 898

Query: 879  --ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+
Sbjct: 899  NSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 958

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              GI PD+I+NPH  PSRMT+G +IE + GK G + G     + F +    A  V+ IS 
Sbjct: 959  CEGITPDIIINPHAIPSRMTIGHLIECIQGKLGSNKGEIGDATPFND----AVNVQKIST 1014

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L ++G+   G +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQ
Sbjct: 1015 FLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQ 1074

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            P EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+ + VC  CGL+   N +  
Sbjct: 1075 PMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNN 1134

Query: 1117 AGICSTCKN 1125
               C  CKN
Sbjct: 1135 TFECKGCKN 1143


>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Oryzias latipes]
          Length = 1120

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1195 (36%), Positives = 647/1195 (54%), Gaps = 144/1195 (12%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  SG     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            +I      +G    +T  +K    IG+IPIMLRS  C+L G  + +L  L ECPLDPGGY
Sbjct: 127  DITKTIIKEGEDQLQTQHQK--TFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGY 184

Query: 177  FIIKGTEKVLLIQEQLSKNRVII--DTDKKGNINASVTSSTETVKSKT----VIQMEKG- 229
            FII G+EKVL+ QE+++ N V +    D K    A   S  E     T    V  M +G 
Sbjct: 185  FIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLEXSSRPTSTIWVSMMARGG 244

Query: 230  ----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                      ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS
Sbjct: 245  QGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPS 304

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            ++E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     
Sbjct: 305  LDEA--FVIQEQNVALNFIGSRGAKP--GVTKERRIKYAKEVLQKEMLPHVGVSDFCETK 360

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ E+    Q
Sbjct: 361  KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ 420

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARL 451
            K +D       R   F+L   I    I+ GL+ +L+TGN+ DVK+    R G++QVL RL
Sbjct: 421  KFID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRL 473

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            +F  TL H+ RV+    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++
Sbjct: 474  TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS 533

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLR
Sbjct: 534  VGSQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLR 591

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD 631
            R       + + V+E                                            D
Sbjct: 592  RQ------MDIIVSE--------------------------------------------D 601

Query: 632  FLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIAGL 679
             +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A +
Sbjct: 602  LVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCASI 656

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + 
Sbjct: 657  IPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFR 716

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      +   
Sbjct: 717  ELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFE 776

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R     E  Q + H+  +   LDDDGL APG  +   DV I K   L      +   
Sbjct: 777  KPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELD-- 827

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
              T+ RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHG
Sbjct: 828  -STNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHG 886

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG CG   +QED PF+  GI PD+I+NPH  PSRMTVG +IE L GK  VS  +   G 
Sbjct: 887  QKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSANKGEIGD 944

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
            A   P   A  V+ +S  L ++G+   G +++Y+G TG  L + IF+GP YYQ+LKHMV 
Sbjct: 945  A--TPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVD 1002

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V
Sbjct: 1003 DKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQV 1062

Query: 1100 QVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             VC +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1063 HVCNLCGLMAIANTRTHTYECRGCRNKTQISLIRMPYACKLLFQELMSMSIAPRM 1117


>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
 gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
          Length = 1224

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1231 (36%), Positives = 668/1231 (54%), Gaps = 134/1231 (10%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
            AP+ S  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++           
Sbjct: 21   API-SAEDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTES 79

Query: 72   SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------- 121
              I     + F  + + +P +   DGV+  L P   RL ++TY++ + V++         
Sbjct: 80   DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVNKRTYEATD 139

Query: 122  ------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
                  +Y   +   +   E + V IGR+P+MLRS  C L    E++L +L ECP D GG
Sbjct: 140  VPGRELKYNLIAEESEEDSENDKVFIGRLPVMLRSKNCYLSDATESDLYKLKECPFDMGG 199

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGK 230
            YFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K
Sbjct: 200  YFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVK 255

Query: 231  MY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPS 276
            +Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P 
Sbjct: 256  LYGRESSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 315

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         
Sbjct: 316  VED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESR 371

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K F++  M+ R++   L++   DD+D+ G KRL+L+G L+  LF+ LF+ +  ++    Q
Sbjct: 372  KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQ 431

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARL 451
            +TV+        ++ F++   I   +IT GL+  L+TGN+ + K+    R G++QVL R 
Sbjct: 432  RTVE-------EANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQVLNRY 484

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++
Sbjct: 485  TYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS 544

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R LR
Sbjct: 545  VGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLR 602

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL-- 623
            R G I   VS+  + +++ + I +D GRV RPL I D          R+++ H+  L+  
Sbjct: 603  RKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVARLMAT 662

Query: 624  ---DGVRSFDD--------FLREGLIEYLDVNEENNALIALY---------EGDATPDT- 662
               D    F+D         L EGL+EY+D  EE + LIA+          E +A PD  
Sbjct: 663  EYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSDEPEAIPDVE 722

Query: 663  ----------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
                            TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG   
Sbjct: 723  TDTAKRIRAVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 782

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN
Sbjct: 783  TNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 842

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDD
Sbjct: 843  QSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGSYDK-----LDD 895

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL +PG  +   D+ I K +P+      +   GQ  + +     +      E  +VD+V
Sbjct: 896  DGLISPGVRVSGEDIIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQV 952

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G    +ED PF+  GI PDLI+
Sbjct: 953  LVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLII 1012

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   
Sbjct: 1013 NPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSR 1067

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG
Sbjct: 1068 GFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGG 1127

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTC 1123
            LR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+      NH      C  C
Sbjct: 1128 LRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHVCGICGLMTVIAKLNHNQFE--CKGC 1185

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N  +I  +++PYA KLL QEL +MNI PRL
Sbjct: 1186 DNKIDIYQIRIPYAAKLLFQELMAMNITPRL 1216


>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
          Length = 1224

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1230 (36%), Positives = 667/1230 (54%), Gaps = 132/1230 (10%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
            +AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++          
Sbjct: 22   SAPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE 80

Query: 72   -SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE------- 122
               I     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++       
Sbjct: 81   SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAV 140

Query: 123  --------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
                    Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D G
Sbjct: 141  DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
            GYFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + 
Sbjct: 201  GYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQV 256

Query: 230  KMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            K+Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P
Sbjct: 257  KLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKP 316

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++        
Sbjct: 317  CVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
             K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LFK +  ++    
Sbjct: 373  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLAR 450
            Q+TV+        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R
Sbjct: 433  QRTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNR 485

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ +
Sbjct: 486  YTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCI 545

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +   +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R L
Sbjct: 546  SVGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTL 603

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL- 623
            RR G I   VS+  + +++ + I +D GRV RPL I +   S      ++++ H+ +++ 
Sbjct: 604  RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIGKIMA 663

Query: 624  ----DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT--------- 662
                D    F+D         L EGL+EY+D  EE + LIA+   D  P           
Sbjct: 664  TEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTESGEENDPDV 723

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 724  DPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 783

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 784  NYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 843

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDDD
Sbjct: 844  SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDD 896

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            GL APG  +   DV I K +P+      +   GQ  + +     +      E  +VD+V 
Sbjct: 897  GLIAPGVRVSGEDVIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVL 953

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+N
Sbjct: 954  VTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIIN 1013

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G
Sbjct: 1014 PHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRG 1068

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGL
Sbjct: 1069 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1128

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCK 1124
            R GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL+      NH      C  C 
Sbjct: 1129 RFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFE--CKGCD 1186

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1187 NKIDIYQIHIPYAAKLLFQELMAMNITPRL 1216


>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
 gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
          Length = 1178

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1194 (36%), Positives = 648/1194 (54%), Gaps = 104/1194 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS------------ 77
            D + ++  F + +GL +Q LDSFN F+   +++IV         I+P             
Sbjct: 18   DAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFT--IEPEEQHMPGEEADGK 75

Query: 78   ----IFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-----------I 121
                  + FK + + +P +T  DG++  L P   RL ++TY+AP+ ++           I
Sbjct: 76   GKKKYKVEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEI 135

Query: 122  EYVQGSHTEKT-TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            +   G + E   T E   V  G++PIMLRS  C L+   + EL  LGECP D GGYFII 
Sbjct: 136  DATTGKYIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIIN 195

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGN---INASVTSSTET---VKSKTVIQM-------- 226
            G+EKVL+ QE++S N V +   ++ +     A   SS E+     S  + ++        
Sbjct: 196  GSEKVLIAQEKMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTKD 255

Query: 227  EKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANL 283
            E G + + +     +IP+ VV +A+G  +D+++++ +     D     LL  SIEE    
Sbjct: 256  EAGVISVTIPYIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEEAQV- 314

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I +Q+ AL+++ GK + S  G     R   A  IL+   L +V V+      K +++  
Sbjct: 315  -IQSQDVALDFI-GK-RGSAVGVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLGY 371

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIIL 399
            ++ R++   L +   DD+D+ GNKR++LSG L+++LF  LF+ +  +V    Q+ +D   
Sbjct: 372  IVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCID--- 428

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGH 459
                      L+  +   +IT GL+ +L+TGN+  +  +  R G++QVL RLSF  TL H
Sbjct: 429  ----SGKDIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSH 484

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R++    +  K++ PR L  S WGM+CP +TPEG+A GLVKNL+LM  V+      PL
Sbjct: 485  LRRLNSPIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSVGSPSAPL 544

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            +       +E+LE +S   + N     V  NG+ +G HR P      +R LRR   I   
Sbjct: 545  LEFLEEWSMENLEEISPSVIVNATKIFV--NGVWVGVHREPAQLVQTLRNLRRKLDITIE 602

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV---RSFDDFLREG 636
            V V  +   R + + +D GR  RPL I +     IK+  ++ L +      +++D +  G
Sbjct: 603  VGVVHDIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLYEKEITGYTWNDLVATG 662

Query: 637  LIEYLDVNEENNALIALY------------EGDATPDTTHIEIEPFTILGVIAGLIPYPH 684
             IEY+D  EE   +IA+              G      TH EI P  ILG+ A +IP+P 
Sbjct: 663  CIEYVDTEEEETTMIAMTIDELVGQRINAEPGGVKHMYTHCEIHPSMILGICASIIPFPD 722

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG
Sbjct: 723  HNQSPRNTYQSAMGKQAMGMYVTNFQIRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPAG 782

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
             N  V +M Y+GY+ ED+++MN+SS+DRG  R I  + +    +K  + T + + RP R 
Sbjct: 783  VNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSLTKEELERPSRD 842

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTD 863
                 R             LDDDGL  PG  +   D+ I K SPL E   S +S      
Sbjct: 843  TTLGMRHGTYDK-------LDDDGLICPGTRVSGEDIIIGKTSPLPEDDPSAVS------ 889

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
             R+     +    + ET ++D+V L ++  G   +K  +R  R P++GDKFSSRHGQKG 
Sbjct: 890  KRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQKGT 949

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G    QED PF+  GI PD+I+NPH  PSRMT+G+++E L GK     G+    + F  
Sbjct: 950  IGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGKEGDATPFTP 1009

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
                  TVESIS+ L   G+   G +++Y+G TG  L+A IF+GP YYQ+LKHMV DK+H
Sbjct: 1010 V-----TVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVDDKIH 1064

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            +RG GP  +LTRQP EGR+R+GGLR GEMERDC+I++GA+  + ERLM  SD + + VC 
Sbjct: 1065 SRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRIHVCE 1124

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGD---NISSMKLPYACKLLIQELQSMNIVPRL 1154
             CGL+   N K +   C  CKN      +  + +PYACKLL QEL SM + PRL
Sbjct: 1125 TCGLIAVANLKNQTFEC--CKNPSERTKVVQVMMPYACKLLFQELMSMAVAPRL 1176


>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1223 (34%), Positives = 661/1223 (54%), Gaps = 132/1223 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F   +GLV+Q LDSF+ FV   ++++V  N  ++       +G +  +  R+
Sbjct: 39   DCWHIISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHEADVTRRY 98

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +++ GQ     P++T  DG    + P   RL ++TY+AP+ V +               
Sbjct: 99   -EIKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYVEMKKRTLVGREDPDSTT 157

Query: 122  -EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
             + V     +++  +   V IG++PIMLRS  C+L    + EL  L ECP D GGYFII 
Sbjct: 158  GDLVWEQEHDESPEDTRKVWIGKVPIMLRSTFCILNKLTQEELFDLNECPYDSGGYFIIN 217

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYL 233
            G+EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   
Sbjct: 218  GSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNQERS 277

Query: 234  LLN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LD 284
            L N       ++K  IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    
Sbjct: 278  LGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFV 336

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+++  +   +T G     R   A  IL+   L ++         K ++   M
Sbjct: 337  IQDREIALDFIGNR--GTTTGLNRERRLRYAQEILQKEMLPHIH--------KAYFFGYM 386

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +     
Sbjct: 387  IHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVET--- 443

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F+LS  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R 
Sbjct: 444  HKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRC 503

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  ++      P+I   
Sbjct: 504  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFL 563

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I   VSV
Sbjct: 564  EEWGLESLE----ENAHSTTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSV 619

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----------- 631
              + ++R + + +D GRVCRPL I +     +++ H++ +  GV  +DD           
Sbjct: 620  VRDIRERELRLYTDAGRVCRPLFIVENNQLTLRKKHIEWIASGVPQYDDAGSRLLKEDGT 679

Query: 632  ----------FLREGLIEYLDVNEENNALIALY-------------------EGDATPDT 662
                       +++G+IE LD  EE   +I +                    E +  P  
Sbjct: 680  YDNQPYEWSNLVKDGVIELLDAEEEETVMICMTPEDLENARLQQAGIDSHRDESEFDPSA 739

Query: 663  -----------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                       TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N L 
Sbjct: 740  RLKNFSMAHLWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLV 799

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+D
Sbjct: 800  RMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 859

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R +  + Y  + +K      +   +P R      RM+   +  L     +DDGL A
Sbjct: 860  RGLFRSMYYRSYMDLEKKSGVQQLEEFEKPTRDT--TLRMKHGTYDKL-----EDDGLIA 912

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +   D+ I K +P+      +    +T ++ R      K    E+ ++D+V + ++
Sbjct: 913  PGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTK-RDVSTPLKST--ESGIIDQVLITTN 969

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
              G   +K  +R TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+++NPH  
Sbjct: 970  AEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAI 1029

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G ++E L  K     G     + F +      TVES+S+ L + G+   G +++
Sbjct: 1030 PSRMTIGHLVECLLSKVATIVGNEGDATPFTDL-----TVESVSQILREQGYQSRGLEIM 1084

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y G TG  LQA ++ GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GE
Sbjct: 1085 YHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGE 1144

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDC+I++G +  + ERL  +SD + + VC +CGL    N K +   C +CKN    S 
Sbjct: 1145 MERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQ 1204

Query: 1132 MKLPYACKLLIQELQSMNIVPRL 1154
            + +PYA KLL QELQSMNI  RL
Sbjct: 1205 LYIPYAAKLLFQELQSMNIAARL 1227


>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
          Length = 1224

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1230 (36%), Positives = 666/1230 (54%), Gaps = 132/1230 (10%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
            +AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++          
Sbjct: 22   SAPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE 80

Query: 72   -SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE------- 122
               I     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++       
Sbjct: 81   SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAI 140

Query: 123  --------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
                    Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D G
Sbjct: 141  DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
            GYFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + 
Sbjct: 201  GYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQV 256

Query: 230  KMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            K+Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P
Sbjct: 257  KLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKP 316

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++        
Sbjct: 317  CVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
             K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LFK +  ++    
Sbjct: 373  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLAR 450
            Q+TV+        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R
Sbjct: 433  QRTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNR 485

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ +
Sbjct: 486  YTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCI 545

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +   +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R L
Sbjct: 546  SVGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTL 603

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL- 623
            RR G I   VS+  + +++ + I +D GRV RPL I +   S      ++++ H+ +L+ 
Sbjct: 604  RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMA 663

Query: 624  ----DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT--------- 662
                D    F+D         L EGL+EY+D  EE + LIA+   D  P           
Sbjct: 664  TEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDV 723

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 724  DPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 783

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 784  NYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 843

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDDD
Sbjct: 844  SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDD 896

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            GL APG  +   DV I K +P+      +   GQ  + +     +      E  +VD+V 
Sbjct: 897  GLIAPGVRVSGEDVIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVL 953

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+ R   PDLI+N
Sbjct: 954  VTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTRRRYVPDLIIN 1013

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G
Sbjct: 1014 PHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRG 1068

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGL
Sbjct: 1069 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1128

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCK 1124
            R GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL+      NH      C  C 
Sbjct: 1129 RFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFE--CKGCD 1186

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1187 NKIDIYQIHIPYAAKLLFQELMAMNITPRL 1216


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1228 (36%), Positives = 676/1228 (55%), Gaps = 129/1228 (10%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
            D+ K+   V  V+  F     F +  GLV+Q LDSFN F+   I+++V     I+     
Sbjct: 46   DELKVQEDVWPVITAF-----FDQKGGLVRQQLDSFNVFIQQTIQELVEGTSEIMLSSSA 100

Query: 77   SIFL-----------RFK-DVRIGQPSM---TVDGVSEKLN------PHMCRLSDMTYAA 115
            S  +           +FK +++ GQ  +   TVD  SE++       P+  RL ++TY++
Sbjct: 101  SYKVGQKRDQQQNQPQFKYNIKFGQIYLSRPTVDTKSEQIEAYSSVYPNDARLRNLTYSS 160

Query: 116  PILVNIEYVQGSHTEKTTME--------------------------KNDVVIGRIPIMLR 149
            P+ V+I      H +K T+                            N + +G IPIMLR
Sbjct: 161  PLYVDI------HEKKITLRPGSTANIYTAQVGEEDTDDFIVQSKIHNQIPLGSIPIMLR 214

Query: 150  SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII--DTDKKGNI 207
            S  C+L   +  ++  +GECP D GGYFII G EKV++ QE+++ N V +      K + 
Sbjct: 215  SVYCML--SEVQDVTDVGECPFDSGGYFIINGGEKVIIAQERMATNHVYVFKKAMSKFSY 272

Query: 208  NASVTSSTE---TVKSKTVIQME------KGKMYLLLNQFV----KKIPIMVVMKAMGME 254
             A + SS E      S   I+ME      KG +  L++  +    + IPI+++ +A+  +
Sbjct: 273  VAEIRSSQEGGYRAPSGFFIKMEPKQGNKKGGIGGLIHATIPYIRQDIPIVILFRALSCQ 332

Query: 255  SDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            +D+E+++ +     D +   LL PS+EE   + + +   AL+Y+ GK + +T G+    R
Sbjct: 333  ADKEIIKHIIYNLNDGQMMELLRPSLEEA--VAVLSNTVALDYI-GK-RGNTLGASQEKR 388

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  IL+   L +V + + ++  K +++  M+ R++   L +  +DD+D+ GNKRLEL
Sbjct: 389  MNHAEEILQKEMLPHVGIGDTSYDRKAYFIGYMVHRLLLGALGRRPLDDRDHYGNKRLEL 448

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L+  LF  LFK ++ E++ T+   + K   SS  D++  + + +IT GL+ +L+TGN
Sbjct: 449  AGGLLQGLFLQLFKKVVKEMESTLKKSILK---SSEIDVAPAVNKRTITKGLQYSLATGN 505

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            + V+  +  R G+ QVL RL++  TL H+ R++   E+S K + PR L  +QWG++CP +
Sbjct: 506  WGVQGSRDIRAGVAQVLNRLTYTSTLSHLRRLNTPIERSGKQAAPRQLHNTQWGVICPAE 565

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF-N 550
            TPEG ACGLVKNLALM+++T   ++  +  +   LG+  L  L   +L   N +  +F N
Sbjct: 566  TPEGGACGLVKNLALMSYITVGTDKTHISKMLDELGINKLHELDESDL---NKYTKVFLN 622

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G+ +G H  P      +R LRR G +   VS+  + ++R V I  D GR  RPL I D+ 
Sbjct: 623  GMWMGVHHTPDELVKHLRVLRRTGAVDMQVSIVRDVREREVRIWCDSGRCARPLFIVDRD 682

Query: 611  ISR--IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL--------------- 653
                 IK  H++ L +   ++D+ L +GL+E +D  EE + +IA+               
Sbjct: 683  HDTLFIKNQHVQALRENTMNWDNLLEQGLVELIDTEEEESIMIAMDFRELVEKRSSANEG 742

Query: 654  --YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
               +G +    TH EI P  ILG++  +IP+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 743  KSRKGGSRQPYTHAEIHPSMILGILGSIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFQQ 802

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+L ++L YPQRPL+TT+ +E + + +L AGQNA VA+  YSGY+ ED+++MN+S++D
Sbjct: 803  RMDTLAHVLYYPQRPLVTTQPMEYLRFGELPAGQNAVVAIACYSGYNQEDSVIMNQSAID 862

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R +  + Y+   +K  N   +   +P R      +             L+DDG+ A
Sbjct: 863  RGLFRSVFYRTYSDHERKKGNFLLENFEKPKRDTTAGMKTSTYEK-------LEDDGIIA 915

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVALC 889
            PG  +  +D+ I K  PL    +    + QT       R     P    E  +VD V + 
Sbjct: 916  PGVRVSGSDIIIGKTVPLPEESAKQKTSRQT-------RLDMSTPLRSNENGIVDTVVVT 968

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
            +D  G   +K  +R  R P++GDKFSSRHGQKG CG   +QED PF+  GI PD+I+NPH
Sbjct: 969  TDSEGFKFVKIKVRVVRIPQIGDKFSSRHGQKGTCGITYRQEDLPFTREGIVPDIIVNPH 1028

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMTVG++IE L GK     G     + F + +     V   SE L   G+     +
Sbjct: 1029 AIPSRMTVGQLIECLLGKISSLSGNEGDATPFTDAN-----VNYFSEMLHSLGYQKRANE 1083

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++++G TG  L+A IF+GP YYQ+LKHMV DK+H+R  GP   LTRQP EGRAR+GGLR 
Sbjct: 1084 VMFNGHTGRKLEAQIFIGPTYYQRLKHMVDDKIHSRARGPLQNLTRQPVEGRARDGGLRF 1143

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDC+I++G++  + ERL   SD + V +C VCG++   N K +   C  C N  + 
Sbjct: 1144 GEMERDCMISHGSAAWLKERLFQVSDEYRVHICNVCGMMATANIKQQQFKCDACDNKTSF 1203

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            S + +PYA KL+IQEL +MN+  R+  A
Sbjct: 1204 SQVFIPYAFKLMIQELMAMNLAVRIITA 1231


>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
 gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
          Length = 1202

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1193 (36%), Positives = 663/1193 (55%), Gaps = 87/1193 (7%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-------------RAND 68
            A    S  D + ++  + + +GLV+Q LDSF+ F+   ++++V              A  
Sbjct: 23   AGSAVSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPG 82

Query: 69   RIVSGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---EYV 124
            +  +  D    + F  + + +P+MT  DG +  + PH  RL ++TY+AP+ V++   +Y 
Sbjct: 83   QAKTNTDTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKYQ 142

Query: 125  QGSH--TEKTTMEKNDVV------IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
              S        ME  D V      IG +PIMLRS  CVL  K + EL  L EC  D GGY
Sbjct: 143  APSSGPANLEDMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGY 202

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVK------SKTVIQMEK-- 228
            FII G+EKVL+ QE++S N V        +  + V  +   V+      S   +QM +  
Sbjct: 203  FIINGSEKVLIAQERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKG 262

Query: 229  -GKMYLLLNQ------FVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSI 277
             GK  +  NQ      ++++ IP++++ +A+G  +D+E+++ +  D   + L+     S+
Sbjct: 263  GGKSAITGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSL 322

Query: 278  EECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPK 337
            EE     I  QE AL+++ G+ + S       DR   A  IL+   L +V V ++N   K
Sbjct: 323  EEA--FVIQEQEVALDFI-GR-RGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKK 378

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QK 393
             +++  ++ +++   L +   DD+D+ GNKRL+L+G L+  LF  LFK +  +V    QK
Sbjct: 379  AYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQK 438

Query: 394  TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSF 453
             VD           F+L+  I   +IT GL  +L+TGN+ +++    + G++QVL RL++
Sbjct: 439  CVD-------NGKDFNLTLAIRSRTITNGLRYSLATGNWGMQK-SASKAGVSQVLNRLTY 490

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              +L H+ R++    +  K + PR L  + WGM+CP +TPEG+A GLVKNLALM +++  
Sbjct: 491  ASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVG 550

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
              + P++        E+LE +  + +  P+S  +  NG  +G HR P      +R LRR 
Sbjct: 551  SPQAPILEFLEEWATENLEEIKPQII--PHSTKIFVNGNWVGVHREPNELIRTLRSLRRC 608

Query: 574  GKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS---FD 630
              I   VSV  +   + + I +D GRVCRPL I +     +++  + +L +   +   + 
Sbjct: 609  VDIDAEVSVIRDLMNKELRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKITNYRWH 668

Query: 631  DFLREGLIEYLDVNEENNALIALYEGDATPDT---THIEIEPFTILGVIAGLIPYPHHNQ 687
            + L +G++E +D  EE   +IA+   D    +   TH EI P  ILG+ A +IP+P HNQ
Sbjct: 669  NLLTDGVVELIDTEEEEVCMIAMEPKDVGTGSQIHTHCEIHPSMILGICASIIPFPDHNQ 728

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL+TTR +E + + +L +G NA
Sbjct: 729  SPRNTYQSAMGKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRAMEYLHFRELPSGINA 788

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             V + SY+GY+ ED+++MN+S++DRGF R    + Y  I+Q+  N +          G  
Sbjct: 789  IVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCY--IDQE-RNKSPHGGPGGGAGGAN 845

Query: 808  AERMQVVHHSNLLLL------ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             E  +     N L L       LD+DGL APG  +  ND+ I K SPL       S    
Sbjct: 846  CEEFEKPSRENCLGLRHGSYHKLDNDGLVAPGTRVSGNDIIIGKTSPLP-----QSEDSS 900

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
             + R++    +      E  ++D V L ++ +G    K   R+ R P++GDKF+SRHGQK
Sbjct: 901  LEQRHQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQK 960

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+++NPH  PSRMTVG ++E L GK     G     + F
Sbjct: 961  GTIGMTYRQEDMPFTVEGITPDIVVNPHAIPSRMTVGHLVECLLGKVSSQTGDEGDATPF 1020

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             +      TV++I++TL   G+  +G +++YSG TG  L A IF+GP +YQ+LKHMV DK
Sbjct: 1021 TDV-----TVQAIADTLHNLGYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVDDK 1075

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +H+R  GP  MLTRQP EGRAR GGLR+GEMERDCLI++G++  + +RL  +SD + V V
Sbjct: 1076 IHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHV 1135

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CG++   N +     C TC+N   IS + +PY+CKLL QEL +M+I PRL
Sbjct: 1136 CDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKLLFQELMAMSIAPRL 1188


>gi|429217659|ref|YP_007175649.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
            15908]
 gi|429134188|gb|AFZ71200.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
            15908]
          Length = 1172

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1158 (36%), Positives = 652/1158 (56%), Gaps = 63/1158 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-----------VSGIDPSI 78
            D + L  +++   GL +QHLDSFN FV   ++KI+ +   I           +S   P I
Sbjct: 12   DLWSLFRQYIHENGLSRQHLDSFNSFVKERLQKIIDSYGEIRPAFKQVKKNEISEEGPDI 71

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
             +    ++I  P +   DG +  + P   R+ ++TY+ P+ + +  ++  +     +E+ 
Sbjct: 72   RVVLGRIKILDPQIKEADGNTRLITPAEARIRNLTYSGPLYLEMALIENGNE----IERE 127

Query: 138  DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            ++ I   PIM++S    +    E EL   GE P DPGGYFII G+E+V++ QE L+ NR+
Sbjct: 128  ELKIADFPIMVKSVVDPISKYKEDELINKGEDPYDPGGYFIINGSERVIVAQEDLAVNRI 187

Query: 198  II--DTDKKGNIN--ASVTSSTETVKSKTVI-QMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
            I+   T     I   A V S+   ++ + ++ +M  G + L +++   +IP +V+MKA+G
Sbjct: 188  IVGLSTANTAKITHTAKVVSTVLGLRRQVIVDRMNDGTLELSMSRLGYRIPFVVMMKALG 247

Query: 253  MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            +E D E+   V  D      LLPS E+ A   I T E ALEY+     R   G P   R 
Sbjct: 248  LEKDAEIAASVSFDSDIQRELLPSFEKVA-FTIKTTEDALEYIG---NRLAPGQPREIRI 303

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
             RA   + + FL ++     + + K +++  M  R+++  LNK   DDKD+  NKRL L+
Sbjct: 304  ARAEDFIDNQFLPHLGNKPEDRKKKAYFLGEMANRVLQLYLNKRGEDDKDHYSNKRLRLA 363

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGN 431
            G L++ +F D F+  ++ V   ++  +S+  +       +F+VR D IT  +   L+TGN
Sbjct: 364  GDLIAEIFRDAFQQFVNTVSSQLEEYISQRKKLR----LRFLVRSDIITERIRAALATGN 419

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +       +R G++Q L R ++I  L H+ RV     + +     R L  + WG LCP +
Sbjct: 420  W-----TQNRTGVSQALDRTNWISLLSHLRRVISPLSRGQTHFEARDLHGTHWGRLCPFE 474

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV---EDLELLSGE--ELHN--PNS 544
            TPEG  CGLVKNLALMT+++   +E  +  +    GV   +++  +S E  ++ N   N 
Sbjct: 475  TPEGINCGLVKNLALMTYISVGVDEKEVERILRNQGVILMDEIIKMSSENNDITNLVNNG 534

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC--VYIASDGGRVCR 602
              V  NG  +G        A  +R +RR G++   V + + ++     VYI +D GR+ R
Sbjct: 535  AKVFLNGSPIGYVENGDELARKLRDMRRKGELSFEVGISLIKEGNTNEVYINTDEGRLLR 594

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            PL++ DKG  R+ +  + ++ +G  SF D +R G+IE++D +EE NA++A    D   DT
Sbjct: 595  PLIVVDKGKPRLTKEMVSKVKNGELSFWDLVRMGVIEFIDPDEEENAIVAERIEDINNDT 654

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+E+    I GV A  IP+  HNQSPRNTYQ AM KQA+G  A N   R+DS  YLL Y
Sbjct: 655  THLELWVTGIFGVAASTIPFLEHNQSPRNTYQSAMAKQALGLYALNYNLRVDSHGYLLHY 714

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQRP++ TR +E +GY++  +GQN  +A MS++GY+IEDAI+ NK+S+D G GR    + 
Sbjct: 715  PQRPIVQTRHLEEMGYNQRPSGQNFILAFMSFTGYNIEDAIIFNKTSIDMGLGRAHFFRV 774

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            Y +    Y    SDRI     T P  +     H  +   + L  DG+  P   +   DV 
Sbjct: 775  YASTENDYPGGLSDRI-----TVPSPKLYD--HKGDQYYIKLGPDGIVEPEAEVVGGDVL 827

Query: 843  INKESPLETRGS--IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            + +ESP    G   ++ P G    R  S +  Y    GE+ VVD V +      +  +K 
Sbjct: 828  VGRESPPRFIGEERVIGP-GVLSKRDTSVQLRY----GESGVVDTVFITQTSERNKLVKV 882

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
             +R  R PELGDKF+SRHGQKGV G +  + D P++E GI PD+I+NPHG PSRMTVG++
Sbjct: 883  KVRDLRIPELGDKFASRHGQKGVVGMLFPRYDMPYTEDGITPDIIVNPHGIPSRMTVGQL 942

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            +EL+  KAG   G++  G+ F     + + + ++   LVK GF  NGK+++Y G TG  +
Sbjct: 943  LELVTAKAGALLGKYIDGTPF-----YKEDINNLQLVLVKKGFDPNGKEVMYDGRTGRLI 997

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            +  I +G  +YQ+L HMV DKMHAR +G   +LTRQPTEG+AR GGLR GEMERDCL+ Y
Sbjct: 998  ENTITIGIAFYQRLYHMVSDKMHARATGKVQLLTRQPTEGKARQGGLRFGEMERDCLVGY 1057

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GA+M++ +R++ +SD + + VC +CG + +YN K     C    +  +I  +K+PYA KL
Sbjct: 1058 GATMMLRDRMLENSDLYVMHVCNLCGHIAWYNSKRGIYECPIHGDSGDIRPIKVPYAFKL 1117

Query: 1141 LIQELQSMNIVPRLKLAE 1158
             +QE+ SM + P +K+++
Sbjct: 1118 FLQEIISMGVKPEIKVSD 1135


>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
 gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
          Length = 1236

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1263 (35%), Positives = 674/1263 (53%), Gaps = 147/1263 (11%)

Query: 4    MQVEGSPKDEQLPDK-------QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFV 56
            M V+    D Q  D        +   +P+ +  D + ++  F + +GLV Q LDSFN FV
Sbjct: 1    MSVKAEETDNQFDDYDDNQYNFEDENSPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFV 59

Query: 57   NTGIRKIVRANDRIV-----------SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPH 104
            +  ++ I+  +  ++             I     + F  + + +P +   DGV+  L P 
Sbjct: 60   DYTLQDIISEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQ 119

Query: 105  MCRLSDMTYAAPILVNIE---------------YVQGSHTEKTTMEKNDVVIGRIPIMLR 149
              RL ++TY++ + V+++               Y   +   +   +   V IGR+PIMLR
Sbjct: 120  EARLRNLTYSSGLFVDVKKRTHEAIDMPGRELKYSLIAEESEEDFDAGKVFIGRLPIMLR 179

Query: 150  SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN- 208
            S  C L    E++L +L ECP D GGYFII G+EKVL+ QE+ + N  I+   KK   + 
Sbjct: 180  SKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSP 237

Query: 209  ----ASVTSSTETVKSKTVIQMEKGKMY-----------LLLNQFVKKIPIMVVMKAMGM 253
                A + S+ E  K    I   + K+Y             L    + IPI+++ +A+G+
Sbjct: 238  ISHIAEIRSALE--KGSRFISTLQVKLYGREGSSSRTIKATLPYIKQDIPIVIIFRALGI 295

Query: 254  ESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPND 310
              D E+++ +     D +   +L P +E+     I  +E AL+++ G+ + +  G     
Sbjct: 296  IPDGEILEHICYDVNDWQMLEMLKPCVED--GFVIQDRETALDFI-GR-RGTALGIKKEK 351

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
            R   A  IL+  FL ++         K F++  M+ R++   L++   DD+D+ G KRL+
Sbjct: 352  RIQYARDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLD 411

Query: 371  LSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            L+G L++ LF+ LF+ +  ++    Q+TV+        +  F++   I   +IT GL+  
Sbjct: 412  LAGPLLAQLFKTLFRKLTRDIFRYMQRTVE-------EAKDFNMKLAINAKTITSGLKYA 464

Query: 427  LSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
            L+TGN+  ++  M  R G++QVL R ++  TL H+ R +    +  K++ PR L  + WG
Sbjct: 465  LATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWG 524

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            ++CP +TPEG+ACGLVKNL+LM+ ++   +  P+I+     G+E LE     +  +P++ 
Sbjct: 525  LVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDAT 582

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             V  NG+  G HR P    + +R LRR G I   VS+  + +++ + I +D GRV RPL 
Sbjct: 583  RVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLF 642

Query: 606  IADKGIS------RIKEHHMKELL--------DGVRSFDDF-----LREGLIEYLDVNEE 646
            I D          ++++ H+ +LL         G    +D+     L EGL+EY+D  EE
Sbjct: 643  IVDDDSELGHKELKVRKGHIAKLLATEYQDIEGGYEDEEDYTWTSLLNEGLVEYIDAEEE 702

Query: 647  NNALIALYEGDATPDT--------------------------------THIEIEPFTILG 674
               LI++   D  P +                                TH EI P  ILG
Sbjct: 703  ETILISMAPEDLEPISPEEIDEANNSEESAGHVDVAKRIKALHHAATFTHCEIHPSMILG 762

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            V A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E
Sbjct: 763  VAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRSME 822

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
             + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y    +KY  S 
Sbjct: 823  YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSI 882

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
            ++   +P RT      +++ H S      LDDDGL +PG  +   D+ I K +P+     
Sbjct: 883  TETFEKPQRTNT----LKMKHGS---YDKLDDDGLISPGVRVSGEDIIIGKTTPISPDEE 935

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
             +   GQ  + +     +      E  ++D+V + ++++G   +K  +R T+ P++GDKF
Sbjct: 936  EL---GQRTAYHSKRDASTPLRSTENGIIDQVLITTNQDGLKFVKVRVRTTKVPQIGDKF 992

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKG  G    +ED PF+  GI PDLI+NPH  PSRMTV  +IE L  K     G 
Sbjct: 993  ASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN 1052

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
                S F +      TVE IS+ L +HG+   G +++Y+G TG  L A IF GP YYQ+L
Sbjct: 1053 EGDASPFTDI-----TVEGISKLLREHGYHSRGFEIMYNGHTGKKLMAQIFFGPTYYQRL 1107

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            +HMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERLM +S
Sbjct: 1108 RHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEAS 1167

Query: 1095 DPFEVQVCRVCGLL---GYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
            D F V +C +CGL+      NH      C  C N  +I  +K+PYA KLL QEL +MNI 
Sbjct: 1168 DAFRVHICGICGLMTVIAKLNHNQFE--CKGCDNKIDIYQIKIPYAAKLLFQELMAMNIT 1225

Query: 1152 PRL 1154
            PRL
Sbjct: 1226 PRL 1228


>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
            [Rhipicephalus pulchellus]
          Length = 1149

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1152 (36%), Positives = 636/1152 (55%), Gaps = 87/1152 (7%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG---IDPSIFLRF 82
            ++  +   +GLV+Q LDSF+ F+   +++IV    +I         SG     P   L+F
Sbjct: 29   VISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHTSGEIENPPRYLLKF 88

Query: 83   KDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVV 140
            + + + +P+    DG    + P+  RL ++TY+AP+ V+I + V   + E    +     
Sbjct: 89   EQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVLKENEEAVETQHQKTF 148

Query: 141  IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIID 200
            IG+IPIMLRS  C+L    + +L+ L ECPLDPGGYFII G+EKVL+ QE+++ N V + 
Sbjct: 149  IGKIPIMLRSTYCLLNNLTDRDLSELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 208

Query: 201  TDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIP 243
              K      K    + +  S+    +  V  + +G           ++  +L    ++IP
Sbjct: 209  QMKDSKYAYKAECRSCLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIP 268

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            IM+V +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  
Sbjct: 269  IMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGA 326

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
            R   G     R   +  IL+   L +V V +     K +Y+  M+ R++ A L +  +DD
Sbjct: 327  RP--GVTKEKRIKYSKEILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDD 384

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFI-V 415
            +D+ GNKRL+L+G L++ LF  LF+ +  EV    QK +D       R   F+L   I  
Sbjct: 385  RDHYGNKRLDLAGPLMAFLFRGLFRNLTKEVRMYAQKFID-------RGKDFNLELAIKT 437

Query: 416  RDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
               IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ RV+    +  K++
Sbjct: 438  XXXITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLA 497

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  + WGM+CP +TPEG A GLVKNLALM++++   +  P++       +E+LE +
Sbjct: 498  KPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEI 557

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYI 593
            +   +       V  NG  +G HR P    + +RKLRR   I    VS+  + + R + I
Sbjct: 558  APSAIAEATKIFV--NGCWVGIHRDPDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRI 615

Query: 594  ASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNAL 650
             +D GR+CRPL+I +     +K  H+  L D      S+ D +  G++EY+D  EE   +
Sbjct: 616  YTDAGRICRPLLIVEDQKLLLKRRHIDNLKDREYNNYSWQDLVASGVVEYIDTLEEETVM 675

Query: 651  IALYEGDATPDT------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
            +++     TPD             TH EI P  ILGV A +IP+P HNQSPRNTYQ AMG
Sbjct: 676  LSM-----TPDDLQDKGLAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 730

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQAMG    N   RMD+L ++L YP +PL TTR++E + + +L AG N+ VA+MSY+GY+
Sbjct: 731  KQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINSIVAIMSYTGYN 790

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSN 818
             ED+I++N S++DRGF R +  + Y     K      ++  +P R      R       N
Sbjct: 791  QEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQGMR-------N 843

Query: 819  LLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG 878
             +   LDDDG+ APG  +  +DV I K   L      +  T +  ++ R A    +  + 
Sbjct: 844  AIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTK-RDASTFLR--NS 900

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            ET +VD+V L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  
Sbjct: 901  ETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTAE 960

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            G+ PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   +  V+ IS  L
Sbjct: 961  GLTPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDSVNVQKISNLL 1016

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             ++G+   G +++++G TG  + A IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP 
Sbjct: 1017 QEYGYHLRGNEVMFNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 1076

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGRAR+GGLR GEMERDC I++GA+  + ERL   SDP+   +C +CGLL   N +    
Sbjct: 1077 EGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLAIANLRNNTF 1136

Query: 1119 ICSTCKNGDNIS 1130
             C  C+N   IS
Sbjct: 1137 ECKGCRNKTQIS 1148


>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
            98AG31]
          Length = 1257

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1231 (35%), Positives = 660/1231 (53%), Gaps = 130/1231 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D +Q++  F   R LV Q + SF+ FVNT ++++V     ++             +    
Sbjct: 45   DCWQVISAFFNERNLVSQQISSFDGFVNTTMQELVDETGSLILEQSMQYTDKAGDLTKRY 104

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI----EYVQGSHTEKT- 132
             + F  + + +P+MT  DG    + P+  RL ++TY+AP+ V++    +   G   E T 
Sbjct: 105  EISFGQIYLSRPTMTESDGTVSPMFPNEARLRNLTYSAPLYVDMSKSNKVATGEFDEVTG 164

Query: 133  ----------TMEKND--VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
                        +KN   + IG++PIMLRS  C+L   D+  L  L ECP D GGYF+I 
Sbjct: 165  EPIYISDDDDNPDKNSSQIYIGKVPIMLRSEFCILDKLDDRGLYDLNECPFDQGGYFVIN 224

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVI-----QMEK 228
            G+EKVL+ QE+++ N V +              I ++V   ++TV +  V      + EK
Sbjct: 225  GSEKVLIAQERMAANHVYVFAKAAPSPISFLSEIRSAVEKGSKTVSTMQVKMFGGHKAEK 284

Query: 229  G----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPR---YSALLLPSIEECA 281
                  +   L      IPI+VV +A+G+  D++++  +  D        +L P +E+  
Sbjct: 285  AGGGATIKTTLPYIRNDIPIVVVFRALGIIPDKDILDHICYDRNDIDMFEMLKPCLED-- 342

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
            +  I  QE AL+++ G+   +T G     R   A  IL+   L ++ +       K ++ 
Sbjct: 343  SFPIQEQEVALDFI-GRRGTAT-GLSREKRLKYAEEILQKEMLPHISMSEGQQGKKAYFF 400

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDI 397
              M+ R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V    QK V+ 
Sbjct: 401  GYMVHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQKCVE- 459

Query: 398  ILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGT 456
             + KP     F+L+  +  ++IT GL+ +L+TGN+ D K+    R G++QVL R +F  T
Sbjct: 460  -MQKP-----FNLNTAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFAST 513

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R +    +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM++++     
Sbjct: 514  LSHLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPS 573

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
             P++      G+E L+  S +       F+   NG+  G HR P    D +++LRR G I
Sbjct: 574  APIVEFLEEWGMESLDEFSADMATGTKVFV---NGVWQGVHRSPAELLDTIKRLRRCGDI 630

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS-------- 628
               VSV  + ++R + + +DGGRVCRPL I +     + + H++ L +G  +        
Sbjct: 631  EPEVSVVRDVRERELRVFTDGGRVCRPLFIVENQQLLLTKDHVEWLSNGYVTGTEDPNGI 690

Query: 629  ----------FDDFLREGLIEYLDVNEENNALIALYEGD--------------------- 657
                      +   + +G++EYLD  EE   +I +   D                     
Sbjct: 691  VPEDEGQPFGWSQLVAKGIVEYLDAEEEETVMICMTPEDLEQSREYQETGQVPKEVFDPA 750

Query: 658  ---------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                      +   TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 751  ARLKGNTSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTN 810

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+S
Sbjct: 811  FRMRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 870

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R    + Y    +K      +   +P R     E    + H     L  DDDG
Sbjct: 871  SIDRGLFRSFYYRSYMDQEKKAGALQMEEFEKPSR-----ENTLRLKHGTYEKL--DDDG 923

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            +  PG  +  +D+ I K +P+      +    +T ++ R      K    E  ++D+V +
Sbjct: 924  IITPGTRVSGDDIIIGKTAPIPPDSEELGQRMKTHTK-RDVSMPLKST--ENGIIDQVLI 980

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             ++++G   +K  IR TR PE GDKF+SRHGQKG  G + +QED PF+  GICPD+I+NP
Sbjct: 981  TTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGICPDIIINP 1040

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMT+G ++E L  K     G     + F E      TVE+IS  L  +G+   G 
Sbjct: 1041 HAIPSRMTIGHLVECLLSKVSTITGNEGDATPFSEV-----TVEAISSLLKDNGYQSRGL 1095

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y+G TG  L+A  ++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 1096 EIMYNGHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLR 1155

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDN 1128
             GEMERDC+I++G +  + ER+   SD + V VC +CG++   N K ++  C  C+N   
Sbjct: 1156 FGEMERDCMISHGIAGFLKERMFDVSDAYRVHVCDICGMVAIANLKKQSFECRACRNKTA 1215

Query: 1129 ISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            IS + +PYA KLL QELQSMNI  R     A
Sbjct: 1216 ISQVYIPYAAKLLFQELQSMNIASRFVFESA 1246


>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
          Length = 1194

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1216 (36%), Positives = 652/1216 (53%), Gaps = 144/1216 (11%)

Query: 43   GLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFKDVRIGQPSMTV 94
            GLV+Q LDSF+ F+ T +++I+  N+ ++    PS        I L+F  + I +P +  
Sbjct: 21   GLVRQQLDSFDEFIETTMQEIIDENNTLIVQSIPSAGKESVQKIILKFGQIYISKPPVIT 80

Query: 95   --DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCR 152
              DG +  L P   RL D+TYA P+ V++      + E        V IG +P+MLRS  
Sbjct: 81   EQDGKTNTLFPCEARLRDLTYACPLYVDVTKSVAENEESDDHFYRQVPIGLVPVMLRSSC 140

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVT 212
            C+L+G  +  L  LGECP D GGYFII G+EKVL+ QE+++ N V +          SV+
Sbjct: 141  CILHGLSDKNLTELGECPYDQGGYFIINGSEKVLIAQERMATNVVHV-------FEKSVS 193

Query: 213  SSTETVKSKTVIQMEKGKMYLLLNQFVKK-----------------IPIMVVMKAMGMES 255
            + T   + ++  Q        L+ + VKK                 IP++V+ +A+G  S
Sbjct: 194  TYTHYAEIRSAPQKGSKTPSALIVKLVKKTETEFLLRATLPGVRQDIPVIVIYRALGFVS 253

Query: 256  DQEVVQMVGRDPRYSALLL---PSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            D+E+++ +  DP    +L    PSIEE     I  Q  AL+Y+ GK + +  GSP   R 
Sbjct: 254  DKEIMEHLIYDPNDKEMLQVIRPSIEEA--FVIQDQNVALDYI-GK-RSAPAGSPREKRI 309

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A  IL   FL ++         K F+   M++R++   + +   DD+D+ G KR++L+
Sbjct: 310  QFAKDILTREFLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKRVTPDDRDHYGKKRMDLA 369

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L++ LF+ LF+ +  E  K +   +        F+++  +    IT G   +L+TGN+
Sbjct: 370  GPLLAQLFKVLFRKLCQETIKHMQKCIEN---KRDFNIALGLKTSIITQGFRYSLATGNW 426

Query: 433  DVKRFKMHRK-GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
              +   M  K G+ QVL R +FI TL H+ RV+    +  K++ PR L  + WGM+CP +
Sbjct: 427  GEQARAMQTKAGVAQVLNRYNFISTLSHLRRVNSPMGREGKLAKPRQLHNTHWGMVCPAE 486

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEG+ACGLVKNL+L+ +++ +     ++ L    G++ LE ++  E++      V  NG
Sbjct: 487  TPEGQACGLVKNLSLLAYISVNHPIEGVVELLEEFGLKSLEEVAASEVNKATKVFV--NG 544

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
              LG     +    V+++++R  +I + VS+  + + + + I  D GR CRP  + +   
Sbjct: 545  TWLGITTEREFLYTVLKRMKRQARIHKDVSIVQSLRDKEIRILCDAGRPCRPCFVVENNR 604

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIA-----LYE----------- 655
                  H   L +G   ++D +  G++EYLDV EE+ A+I      LY+           
Sbjct: 605  ILFTAEHANMLREGKMIWEDLVNNGIVEYLDVEEEDQAMICMSPDELYKQQMVTDRVNAE 664

Query: 656  ------------------------GDATP---------DTTHIEIEPFTILGVIAGLIPY 682
                                      ATP         + TH EI P  ILG+ A +IP+
Sbjct: 665  LRGERGESVERSKGHASRNMGKHIAPATPGDDLHDLITNYTHCEIHPSMILGICASMIPF 724

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AM KQAMG  A N L RMDSL  +L YPQ+PL+TTR +E + + +L 
Sbjct: 725  PDHNQSPRNTYQSAMSKQAMGVYATNFLLRMDSLSNILFYPQKPLVTTRAMEYLRFRELP 784

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  Y+GY+ ED+++MN+S++DRG  R  + + YT  +Q+  N          
Sbjct: 785  AGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFRSFLYRTYT--DQETMN---------- 832

Query: 803  RTGPGA-------ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR--- 852
              GPG         R +V+   NL    LD+DG+  PG  +   DV I K  P+  R   
Sbjct: 833  --GPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVNPGARVTGEDVLIGKILPVIERTGA 890

Query: 853  ----------GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
                      G I + +  T+  ++ A    +    E  VVD V + +++ G    K  I
Sbjct: 891  DGGALIDNKDGKINTESNATNVSWKDASTAMR--PTEEGVVDSV-IVTNREGYKFTKVKI 947

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R  R PE+GDKF+SRHGQKG  G  ++ ED PF+  GI PD+I+NPH  PSRMT+G +IE
Sbjct: 948  RSCRVPEMGDKFASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIPSRMTIGHLIE 1007

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
             L GK     G    G+ F +      TVE+ISE L   G+ + G + +Y+G+TG  L A
Sbjct: 1008 CLLGKVSALAGEEGDGTPFSDV-----TVEAISEQLKDFGYEHRGLETMYNGMTGRKLDA 1062

Query: 1023 YIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGA 1082
             IF+GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G 
Sbjct: 1063 QIFIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHGT 1122

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            S+ + ERL   SD F + VC  CGL       L+ G C  C N   ++ +++PYA KLL+
Sbjct: 1123 SLFLRERLFEVSDFFSLIVCEQCGLFC-----LEDG-CKGCGNKTKLAIVEMPYAFKLLL 1176

Query: 1143 QELQSMNIVPRLKLAE 1158
            QEL  MNI PRL+L +
Sbjct: 1177 QELMGMNIAPRLRLCD 1192


>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
          Length = 1228

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1232 (35%), Positives = 658/1232 (53%), Gaps = 142/1232 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I++++  +  ++              +   
Sbjct: 21   DCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTSEKDSKNKRY 80

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
             + F  + I +PS T  DG +  + P   RL ++TY+AP+ V++                
Sbjct: 81   EITFGKMYISKPSQTEGDGTTHPMFPQEARLRNLTYSAPLYVDMSKKVFESDDNNRVDNE 140

Query: 122  -----EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
                 + VQG  ++      + V +G++PIM+RS  C+L    E E+  L ECP D GGY
Sbjct: 141  LEWKEQIVQGEDSD------SQVYLGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGY 194

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKM 231
            F+I G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+
Sbjct: 195  FVINGSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIE--KGSRLISAMQIKL 250

Query: 232  Y-------------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLP 275
            Y               L    + IPI++V +A+G+  D ++++ +     D +   +L P
Sbjct: 251  YGRDEKSSSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKP 310

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +EE     I  +E AL+++    +R   G     R   A  IL+   L N+        
Sbjct: 311  CVEE--GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFET 365

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV 395
             K F++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +
Sbjct: 366  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYM 425

Query: 396  DIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFI 454
               +        F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++ 
Sbjct: 426  QRCVEN---DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYS 482

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   
Sbjct: 483  STLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 542

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
               P+ S     G+E LE       ++P++  V  NG+ +G HR P    D MR LRR G
Sbjct: 543  PSEPISSFLRDWGLEPLEDYVPS--NSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNG 600

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVR 627
             I   VS+  + +++ + I +D GRV RPL I D       KG  ++K+ H+  LL+   
Sbjct: 601  DISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHVNRLLESSY 660

Query: 628  SFDD---------FLREGLIEYLDVNEENNALIALYEGD--------------------- 657
              D+          +REG++EY+D  EE   +IA+   D                     
Sbjct: 661  DGDEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQQDLQMEEQ 720

Query: 658  --------------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
                           T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 721  ELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 780

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED++
Sbjct: 781  VFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 840

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+SS+DRGF R +  + Y  + ++      +   +P R+    + +++ H +      
Sbjct: 841  IMNQSSIDRGFFRSLFFRSYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YEK 893

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +V
Sbjct: 894  LDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRS--TESGIV 950

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PD
Sbjct: 951  DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPD 1010

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            LI+NPH  PSRMTV  +IE L  K     G     S F +      T E+IS+ L +HG+
Sbjct: 1011 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAISKLLREHGY 1065

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R
Sbjct: 1066 QSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1125

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICST 1122
            +GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC  CGL+    N K     C +
Sbjct: 1126 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRS 1185

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1186 CKNKTNIYQIHIPYAAKLLFQELMAMNITPRL 1217


>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
 gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
          Length = 1222

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1222 (35%), Positives = 659/1222 (53%), Gaps = 131/1222 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++             I    
Sbjct: 27   DSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEADNISRKY 86

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--------------- 122
             + F  + + +P +   DGV+  L P   RL ++TY++ + V+++               
Sbjct: 87   EISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGRELK 146

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y   +   +   E   V IGR+PIMLRS  C L    E +L +L ECP D GGYFII G+
Sbjct: 147  YELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATELDLYKLKECPFDMGGYFIINGS 206

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY----- 232
            EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K+Y     
Sbjct: 207  EKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVKLYGREGS 262

Query: 233  ------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANL 283
                    L    + IPI+++ +A+G+  D E+++ +     D +   +L P +E+    
Sbjct: 263  SARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVED--GF 320

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K F++  
Sbjct: 321  VIQDRETALDFI-GR-RGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGY 378

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIIL 399
            M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q+TV+   
Sbjct: 379  MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVE--- 435

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLG 458
                 +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R ++  TL 
Sbjct: 436  ----EAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 491

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   +  P
Sbjct: 492  HLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMP 551

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            +I+     G+E LE     +  +P++  V  NG+  G HR P    + +R LRR G I  
Sbjct: 552  IITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINP 609

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL--------D 624
             VS+  + +++ + I +D GRV RPL I +   +      ++++ H+ +L+         
Sbjct: 610  EVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIGKLMATEYQDIEG 669

Query: 625  GVRSFDDF-----LREGLIEYLDVNEENNALIALYEGDATP------------------- 660
            G    +D+     L EGL+EY+D  EE   LI++   D  P                   
Sbjct: 670  GFEDSEDYTWSSLLNEGLVEYIDAEEEETILISMQPEDLEPVQEAHEFNEDDDLAKRIRA 729

Query: 661  -----DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 730  TQHATTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDT 789

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            +  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  
Sbjct: 790  MANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF 849

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    +KY  S ++   +P RT     RM+   +       LDDDGL APG  
Sbjct: 850  RSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDDGLIAPGVR 902

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   D+ I K +P+      +   GQ  + +     +      E  +VD+V + ++++G 
Sbjct: 903  VSGEDIIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGL 959

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R T+ P++GDKF+SRHGQKG  G    +ED PF+  GI PDLI+NPH  PSRM
Sbjct: 960  KFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRM 1019

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TV  +IE L  K     G     S F +      TVE IS+ L +HG+   G +++Y+G 
Sbjct: 1020 TVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRGFEVMYNGH 1074

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 1075 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1134

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCKNGDNISSM 1132
            C+IA+GA+  + ERLM +SD F V +C +CGL+      NH      C  C N  +I  +
Sbjct: 1135 CMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFE--CKGCDNKIDIYQI 1192

Query: 1133 KLPYACKLLIQELQSMNIVPRL 1154
             +PYA KLL QEL +MNI PRL
Sbjct: 1193 NIPYAAKLLFQELMAMNITPRL 1214


>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
 gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1223

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1250 (35%), Positives = 670/1250 (53%), Gaps = 134/1250 (10%)

Query: 4    MQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63
            M  E    DE     ++  AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I
Sbjct: 1    MSTEDYYGDEDPYGFEEETAPI-TAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDI 59

Query: 64   VRANDRIV-----------SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDM 111
            +  +  ++             I     + F  + + +P +   DGV+  L P   RL ++
Sbjct: 60   ISEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQESRLRNL 119

Query: 112  TYAAPILVNIE---------------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLY 156
            TY++ + V++                Y   +   +   E + V IGR+PIMLRS  C L 
Sbjct: 120  TYSSGLFVDVNKRTYEAVDVPGRDLNYQLIAEESEEDNENDKVFIGRLPIMLRSKNCYLS 179

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASV 211
               E++L +L ECP D GGYFII G+EKVL+ QE+ + N  I+   KK   +     A +
Sbjct: 180  DATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEI 237

Query: 212  TSSTETVKSKTVIQMEKGKMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVV 260
             S+ E  K    I   + K+Y             L    + IPI+++ +A+G+  D E++
Sbjct: 238  RSALE--KGSRFISTLQVKLYGREGSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEIL 295

Query: 261  QMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317
            + +     D +   +L P +E+     I  +E AL+++ G+ + +  G     R   A  
Sbjct: 296  EHICYDVNDWQMLEMLKPCVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYARD 351

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
            IL+  FL ++         K F++  M+ R++   L++   DD+D+ G KRL+L+G L+ 
Sbjct: 352  ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLG 411

Query: 378  LLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
             LF+ LF+ +  ++    Q+TV+        ++ F++   I   +IT GL+  L+TGN+ 
Sbjct: 412  QLFKTLFRKLTKDIFRYMQRTVE-------EANDFNMKLAINAKTITSGLKYALATGNWG 464

Query: 434  VKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
             ++  M  R G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +T
Sbjct: 465  EQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 524

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNL+LM+ ++   +  P+I+     G+E LE     +  +P++  V  NG+
Sbjct: 525  PEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGV 582

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD---- 608
              G HR P    + +R LRR G I   VS+  + +++ + I +D GRV RPL I +    
Sbjct: 583  WHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVENDEQ 642

Query: 609  ---------KG-ISRIKEHHMKELLDGVR-----SFDDFLREGLIEYLDVNEENNALIAL 653
                     KG I+R+     +++  G       ++   L EGL+EY+D  EE   LIA+
Sbjct: 643  LGHKELKVRKGHIARLMATEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEETILIAM 702

Query: 654  YEGDATP-------------DT-------------THIEIEPFTILGVIAGLIPYPHHNQ 687
               D  P             DT             TH EI P  ILGV A +IP+P HNQ
Sbjct: 703  QPEDLDPVQEEEEMEVDENVDTAKRIRSVHHATTFTHCEIHPSMILGVAASIIPFPDHNQ 762

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA
Sbjct: 763  SPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNA 822

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y    +KY  S ++   +P RT   
Sbjct: 823  IVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--N 880

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
              RM+   +       LDDDGL APG  +   D+ I K +P+      +   GQ  + + 
Sbjct: 881  TLRMKHGSYDK-----LDDDGLIAPGVRVSGEDIIIGKTTPISPDEEEL---GQRTAYHS 932

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
                +      E  +VD+V + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G  
Sbjct: 933  KRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGIT 992

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
              +ED PF+  GI PDLI+NPH  PSRMTV  +IE L  K     G     S F +    
Sbjct: 993  YGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI--- 1049

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
              TVE IS+ L +HG+   G +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  
Sbjct: 1050 --TVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARAR 1107

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL
Sbjct: 1108 GPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGL 1167

Query: 1108 L---GYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +      NH      C  C N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1168 MTVIAKLNHNQFE--CKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1215


>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
 gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
          Length = 1143

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1164 (36%), Positives = 646/1164 (55%), Gaps = 73/1164 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV--------SGIDPSIFLRFK 83
            + ++ +F + +GLV Q +DSF+ FV T +++++  +  I         +     I L+F 
Sbjct: 11   WDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITVQSTLSAGNETRKKITLKFG 70

Query: 84   DVRIGQPS--MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
             + + +P      DG +  L P+  RL D+TY + + ++I  V+ + +E   ++++    
Sbjct: 71   QIYVSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDI--VKTTESESGVVDQHRYSR 128

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            +  G +P+M++S  C  Y   E EL ++GEC  D GGYFII G+EKV++ QE+++ N + 
Sbjct: 129  IPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIINGSEKVIIAQERMASNTIY 188

Query: 199  IDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFV---------KKIPIMVVMK 249
            +   K    + S  +   +V  K         + L  N  V         ++IP+ ++ +
Sbjct: 189  V-FKKSQPASYSHYAEIRSVPEKGAKNPSAVSLKLCRNPNVIRVSIPYAKQEIPLFIIYR 247

Query: 250  AMGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
            A+G  SD+E+   +    D     LL  SI E A   +  Q  AL+Y+ GK + +  GS 
Sbjct: 248  ALGFLSDKEITDHIITTNDDEMFDLLKESILESAV--VQDQNVALDYI-GK-RAAPVGSS 303

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
               R   A  +L    L ++         K +++  M+++++   L +   DD+D+ G K
Sbjct: 304  REKRINFAKDLLAKELLPHIGTQEFCETKKAYFLGYMVQKLLLVALGRKREDDRDHYGKK 363

Query: 368  RLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTL 427
            R++L+G L++ LF  L+K + SE  K +   +        F+++  +   +I  G    +
Sbjct: 364  RMDLAGPLLASLFRSLYKKLCSETAKHMQKCIEG---GRDFNIALGLKASTIAQGFRYAI 420

Query: 428  STGNFDVKRFKMHRK-GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +TGN+  +   M  K G+ QVL R +F+ TL H+ RV+   EK  K++ PR L  + WGM
Sbjct: 421  ATGNWGDQAHAMQSKAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAKPRQLHNTHWGM 480

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            +CP +TPEG+ACGLVKNL+LM +++      P++      G+E LE +S  +L N     
Sbjct: 481  ICPAETPEGQACGLVKNLSLMAYISVGSSSEPIVEFLEECGLESLEEISHLQLQNATKVF 540

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG+ +G H  P+     +R LRR  +I + VS+  + +++ + I SD GR CRPL +
Sbjct: 541  V--NGVWVGIHEDPEYLISSLRMLRRTLEIDKEVSIIRDIREKEIKIQSDSGRPCRPLFV 598

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL------------- 653
                   I E +  +      +++DF+  GLIE+LDV EE  ++IA+             
Sbjct: 599  VKNNKLCIDEAYSNKEEIKRCTWNDFIENGLIEFLDVEEEEVSMIAMSPDQLNSVKKDLR 658

Query: 654  YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
               D   + TH EI P TILG+ A +IP+P HNQSPRNTYQ AM KQAMG  A N + RM
Sbjct: 659  ASEDLNINYTHCEIHPATILGICASVIPFPDHNQSPRNTYQSAMVKQAMGIYATNFMLRM 718

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D+L  +L YPQ+PL+TT+++E + + +L  GQNA VA+ SY+GY+ ED+I+MN+S++DRG
Sbjct: 719  DTLSNILFYPQKPLVTTKSMEYIRFKELPPGQNAIVAIASYTGYNQEDSIIMNQSAIDRG 778

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
              R    + YT         T +   +P R+       +V+   NL    LD+DG+   G
Sbjct: 779  LFRSFFYRTYTDQENTTRPGTHEEFCKPLRS-------EVIRMRNLNYSKLDNDGIIPTG 831

Query: 834  EIIKPNDVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
              +  +DV I K SP+    R +  +P         S R+T  G       VD V + ++
Sbjct: 832  TRVTGDDVLIGKVSPILDPERSTKGNPVYLKKDSSTSMRRTEDG------FVDSV-IVTN 884

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            K G    K  +R  R P++GDKF+SRH QKG  G  + QED PF+  GI PD+I+NPH  
Sbjct: 885  KEGYKFAKVKVRSCRIPQMGDKFASRHAQKGTVGITLNQEDMPFTSEGIVPDIIINPHAI 944

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G +IE L GK     G     + F     +  TV++ISE L ++ +   G +++
Sbjct: 945  PSRMTIGHLIECLMGKTCALTGEEGDATPF-----NGVTVDNISEKLKEYNYQQRGFEVM 999

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y+G+TG  L+A I++GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GE
Sbjct: 1000 YNGMTGHKLRAQIYIGPTYYQRLKHMVDDKIHARAKGPLQILTRQPVEGRSRDGGLRFGE 1059

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDC+I++GAS  + ERLM  SDP+   +C +CGL+     +     C  C N  N+S 
Sbjct: 1060 MERDCIISHGASAFLKERLMDVSDPYTCCICDLCGLIAIDTKRYNE--CKGCNNRTNLSL 1117

Query: 1132 MKLPYACKLLIQELQSMNIVPRLK 1155
            +++PYA KLLIQEL  MNI PR+K
Sbjct: 1118 VEIPYAFKLLIQELMGMNIAPRIK 1141


>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
 gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
          Length = 1222

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1231 (35%), Positives = 667/1231 (54%), Gaps = 132/1231 (10%)

Query: 22   AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
            +AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++          
Sbjct: 18   SAPI-TAEDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTE 76

Query: 72   -SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-------- 121
               I     + F  + + +P +   DGV+  L P   RL ++TY++ + V++        
Sbjct: 77   ADNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVRKRTYEAV 136

Query: 122  -------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
                   +Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D G
Sbjct: 137  DVPGRDLKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMG 196

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
            GYFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + 
Sbjct: 197  GYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQV 252

Query: 230  KMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            K+Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P
Sbjct: 253  KLYGRESSSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKP 312

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++        
Sbjct: 313  CVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 368

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
             K F++  M+ R++   L++   DD+D+ G KRL+L+G L+  LF+ LF+ +  ++    
Sbjct: 369  RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYM 428

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLAR 450
            Q+TV+        ++ F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R
Sbjct: 429  QRTVE-------EANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNR 481

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ +
Sbjct: 482  YTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCI 541

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +   +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R L
Sbjct: 542  SVGTDPMPIITFLSEWGMEPLEDYIPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTL 599

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL- 623
            RR G I   VS+  + +++ + I +D GRV RPL I +   +      ++++ H+ +L+ 
Sbjct: 600  RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHINKLMA 659

Query: 624  ----DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATP---------DT 662
                D    F+D         L EGL+EY+D  EE   LIA+   D  P         DT
Sbjct: 660  TEYQDIEGGFEDSEEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPMGEEEETQNDT 719

Query: 663  -----------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
                             TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 720  AMDPAKRIKATQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 779

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++M
Sbjct: 780  LTNFNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIM 839

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N+SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LD
Sbjct: 840  NQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPHRT--NTLRMKHGTYDK-----LD 892

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDGL APG  +   D+ I K +P+      +   GQ  + +     +      E  +VD+
Sbjct: 893  DDGLIAPGVRVSGEDIIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQ 949

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI
Sbjct: 950  VLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTADGIVPDLI 1009

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+  
Sbjct: 1010 INPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYHS 1064

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+G
Sbjct: 1065 RGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDG 1124

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTC 1123
            GLR GEMERDC+IA+GA+  + ERLM +SD F V +C  CGL+     KL      C  C
Sbjct: 1125 GLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIA-KLSHNQFECKGC 1183

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1184 NNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1214


>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
          Length = 1223

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1230 (35%), Positives = 667/1230 (54%), Gaps = 133/1230 (10%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
            AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++           
Sbjct: 21   API-TAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQ 79

Query: 72   SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------- 121
              I     + F  + + +P +   DGV+  L P   RL ++TY++ + V++         
Sbjct: 80   DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEAVD 139

Query: 122  ------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
                   Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D GG
Sbjct: 140  VPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGG 199

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGK 230
            YFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K
Sbjct: 200  YFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVK 255

Query: 231  MY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPS 276
            +Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P 
Sbjct: 256  LYGRESSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 315

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         
Sbjct: 316  VED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR 371

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q
Sbjct: 372  KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQ 431

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARL 451
            +TV+        ++ F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R 
Sbjct: 432  RTVE-------EANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY 484

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++
Sbjct: 485  TYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS 544

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    + +R LR
Sbjct: 545  VGADPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLR 602

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA--DKGISR----IKEHHMKELL-- 623
            R G I   VS+  + +++ + I +D GRV RPL I   D+ + R    +++ H+ +L+  
Sbjct: 603  RKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMAT 662

Query: 624  ------DGVRSFDDF-----LREGLIEYLDVNEENNALIALYEGDATPDT---------- 662
                   G    +D+     L EGL+EY+D  EE + LIA+   D  P            
Sbjct: 663  EYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENV 722

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 723  DLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 782

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 783  NYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 842

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LD+D
Sbjct: 843  SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDED 895

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            GL APG  +   D+ I K +P+      +   GQ  + +     +      E  +VD+V 
Sbjct: 896  GLIAPGVRVSGEDIIIGKTTPIAPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVL 952

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+N
Sbjct: 953  ITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIIN 1012

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G
Sbjct: 1013 PHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRG 1067

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGL
Sbjct: 1068 FEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGL 1127

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCK 1124
            R GEMERDC+IA+GA+  + ERLM +SD F V +C +CGL+      NH      C  C 
Sbjct: 1128 RFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFE--CKGCD 1185

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1186 NKIDIYQIHIPYAAKLLFQELMAMNITPRL 1215


>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
            hirsutum FP-91666 SS1]
          Length = 1230

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1214 (35%), Positives = 660/1214 (54%), Gaps = 118/1214 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIF--- 79
            D + ++  F   +GLV+Q LDSF+ FV   +++++  N  ++       +G D  +    
Sbjct: 35   DCWTVISSFFDEKGLVRQQLDSFDEFVQNTMQELIEENADLILDQADQHTGHDNDVTRRY 94

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHT------ 129
             L F  V + + ++T  DG    + P   RL ++TY++P+ V +   +  G         
Sbjct: 95   ELHFNQVYLSRATVTEADGSVVPVFPQEARLRNLTYSSPLYVEVARRFSVGREDPDGQAG 154

Query: 130  ---------EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
                     E +T E   V IG++P+MLRS  C+L    E EL  L ECP D GGYFII 
Sbjct: 155  EINWEVEVDEISTKEFQKVWIGKLPLMLRSQFCILSELGENELYDLNECPYDSGGYFIIN 214

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGKMYLLLNQ 237
            G+EKVL+ QE+++ N V +    +    N  A + S+ E    KT+ Q +  KMY   NQ
Sbjct: 215  GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEK-GGKTISQFQV-KMYHR-NQ 271

Query: 238  -------------FVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN- 282
                         ++K  IPI VV +A+G+ SD+++++ +  D    A +L  ++ C + 
Sbjct: 272  DKTSGNVIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDME-DAQMLEMLKPCIDD 330

Query: 283  -LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++  +   +T G     R   A  IL+   L ++ +   +   K ++ 
Sbjct: 331  GFVIQDREIALDFIGNR--GTTTGLSRERRLRYAQEILQKEMLPHISMSEGSESKKAYFF 388

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++ A + +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V +     L K
Sbjct: 389  GYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYR----YLQK 444

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
               + + F+L+  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H
Sbjct: 445  CVETHKDFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSH 504

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  ++      P+
Sbjct: 505  LRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSLSLPV 564

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            I      G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I  
Sbjct: 565  IDFLEEWGLESLE----ENAHSATPTTKVFVNGVWMGVHRDPANLIKTIKKLRRKDDIHP 620

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDF 632
             VS+  + ++R + + +D GRVCRPL + +     + + H+  L  G         +++ 
Sbjct: 621  EVSIVRDIRERELRLYTDAGRVCRPLFVVEDQQLAVTKKHINMLTRGTDDNGEEFKWNNL 680

Query: 633  LREGLIEYLDVNEENNALIALYEGD--------------------------------ATP 660
            ++ G++EYLD  EE   +I +   D                                 T 
Sbjct: 681  IKSGVVEYLDAEEEETVMICMTPEDLENSRLQSSGINPHAEDSDFDPAARLKASSGLNTH 740

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
              TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L
Sbjct: 741  TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANIL 800

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
             YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  
Sbjct: 801  YYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYY 860

Query: 781  KKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            + Y  + +K      +   +P R      RM+   +       L+DDGL APG  +   D
Sbjct: 861  RSYMDLEKKSGIQQLEEFEKPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTGVNGED 913

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            + I K +P+      +    +  +R R      K    E+ +VD+V + ++  G   +K 
Sbjct: 914  IIIGKTAPIPPDSEELGQRTRIHTR-RDVSTPLKST--ESGIVDQVLITTNHEGQKFVKV 970

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
             +R TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+++NPH  PSRMT+G +
Sbjct: 971  RVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHL 1030

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            +E L  K     G     + F +      TVES+S+ L   G+   G +++Y G TG  L
Sbjct: 1031 VECLLSKVATLIGNEGDATPFTDL-----TVESVSQFLRAQGYQSRGLEVMYHGHTGRKL 1085

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
            QA +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++
Sbjct: 1086 QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISH 1145

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            G +  + ERL  +SD + + VC +CGL    N K ++  C  CKN    S + +PYA KL
Sbjct: 1146 GVAGFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQIHIPYAAKL 1205

Query: 1141 LIQELQSMNIVPRL 1154
            L QELQSMNI  RL
Sbjct: 1206 LFQELQSMNIAARL 1219


>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1241

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1224 (35%), Positives = 666/1224 (54%), Gaps = 132/1224 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+NT I+++V  +  ++             I+   
Sbjct: 43   DCWTVISSFFREKGLVSQQLDSFDEFINTSIQELVWEDSTLILEQPAQHITEDDNINRKY 102

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN---IEYVQGSHTEKTTM 134
             ++F  + + +P+MT  DG ++++ P   RL ++TYAAP+ V    I Y     T   T+
Sbjct: 103  EIKFGKIFLSRPTMTESDGTTQQMFPQEARLRNLTYAAPLFVEMDKITYETIDGTNDWTV 162

Query: 135  EK-----------ND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
             K           ND   V IGR+PIML+S  C+L   +E E+  L ECP D GGYF+I 
Sbjct: 163  IKDEVEDELDDDGNDNKKVYIGRVPIMLKSKYCLLRDLEEEEMYSLKECPYDMGGYFVIN 222

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY--- 232
            G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+Y   
Sbjct: 223  GSEKVLIAQERSAAN--IVQVFKKSAPSPVSHVAEIRSALE--KGSRLISSMQIKLYGRD 278

Query: 233  ---------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEEC 280
                       L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE 
Sbjct: 279  DKGSGRTIKATLPYIKQDIPIVIVFRALGIVPDGDILEHICYDQNDWQMFEMLKPCVEE- 337

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
                I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K F+
Sbjct: 338  -GFVIQDREVALDFI-GR-RGNALGIRREKRIQYAKDILQKEFLPHITQQEGFESRKAFF 394

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVD 396
            +  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++    Q++V+
Sbjct: 395  LGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDIYRYMQRSVE 454

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIG 455
                     + F+L   +   +IT GL+ +L+TGN+  ++  M  R G++QVL R ++  
Sbjct: 455  T-------DTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 507

Query: 456  TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
            TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++    
Sbjct: 508  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSG 567

Query: 516  EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK 575
              P+I      G+E LE     +   P++  +  NG+  G HR P      MR LRR G+
Sbjct: 568  SDPIIYFLEEWGMEPLEDYLPHQA--PDATRIFVNGVWHGIHRDPAKLISTMRNLRRRGE 625

Query: 576  IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------IKEHHMKELLDGVRS- 628
            I   VS+  + +++   + +D GRV RPL + +           +K  H+++++D     
Sbjct: 626  ISPEVSIIRDIREKEFKVFTDAGRVYRPLFVVEDNEETGAKELALKREHVQKIVDTEYGD 685

Query: 629  ----------FDDFLREGLIEYLDVNEENNALIALYEGDATPDT---------------- 662
                      ++  +  G++EY+D  EE   +IA+   D  P+                 
Sbjct: 686  YEEMEEEPFVWNSLVTNGIVEYVDAEEEETIMIAMSPEDLNPEKYGTQNYDDPDPNKRLK 745

Query: 663  ----------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                      TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 746  PGTNKHAQTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVR 805

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DR
Sbjct: 806  MDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 865

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R +  + Y    ++   +  ++  +P+R+      +++ H +      LDDDGL AP
Sbjct: 866  GLFRSLFFRSYMDQEKRVGMTVVEQFEKPNRSNT----LRLKHGT---YEKLDDDGLIAP 918

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +   D+ I K +P++     +   GQ    +     +      E  +VD+V + +++
Sbjct: 919  GVRVSGEDIIIGKTTPIQADSEEL---GQRTVYHSKRDASTPLRSTENGIVDQVLITTNQ 975

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
             G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+NPH  P
Sbjct: 976  EGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTREGIVPDLIINPHAIP 1035

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMTV  +IE L  K     G     S F +      TV++IS+ L +HG+   G +++Y
Sbjct: 1036 SRMTVAHLIECLLSKVSALSGLEGDASPFTDV-----TVDAISKLLREHGYQSRGFEVMY 1090

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            +G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEM
Sbjct: 1091 NGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEM 1150

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGDNIS 1130
            ERDC+IA+GA+  + ERLM +SD F V VC VCGL+     KLK     C  CKN  +I 
Sbjct: 1151 ERDCMIAHGAAAFMKERLMEASDAFRVHVCGVCGLMSVIA-KLKHNQFECRGCKNKIDIY 1209

Query: 1131 SMKLPYACKLLIQELQSMNIVPRL 1154
             + +PYA KLL QEL +MNI PRL
Sbjct: 1210 QIHIPYAAKLLFQELMAMNIAPRL 1233


>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1233

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1237 (35%), Positives = 656/1237 (53%), Gaps = 149/1237 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----SGIDPSIF----- 79
            D + ++  F + +GLV Q LDSF+ F+ T I+++V  +  +V            F     
Sbjct: 23   DCWLVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLVLDQPAQHTSEDDFENRRY 82

Query: 80   -LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V++                
Sbjct: 83   EISFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVFKSDDNDRKNNE 142

Query: 122  -----EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
                 E+V+G  T+        V +G++PIMLRS  C+L    E E   L ECP D GGY
Sbjct: 143  LEWIEEHVEGEGTD------TKVYLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGY 196

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKM 231
            F+I G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+
Sbjct: 197  FVINGSEKVLIAQERSAAN--IVQVFKKAGPSPISHVAEIRSALE--KGSRLISSLQIKL 252

Query: 232  Y-------------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLP 275
            Y               L    + IPI++V +A+G+  D ++++ +     D +   +L P
Sbjct: 253  YGRDDRAASGRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKP 312

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +EE     I  QE AL+++    +R   G     R   A  IL+   L N+        
Sbjct: 313  CVEE--GFVIQEQEVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFAT 367

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV 395
             K F++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LF+ +  ++   +
Sbjct: 368  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYNYM 427

Query: 396  DIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFI 454
               +        F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++ 
Sbjct: 428  QRCVEN---DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYS 484

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   
Sbjct: 485  STLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 544

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
               P++      G+E LE  S     +P+S  V  NG+ +G HR P    + +R LRR G
Sbjct: 545  SSEPILVFLEEWGLEPLEDYSPST--SPDSTRVFVNGVWVGTHRDPSSLVETIRSLRRKG 602

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVR 627
             I   VS+  + ++R   I +D GRV RPL I D       KG   + + H+K+L+D   
Sbjct: 603  DISPEVSIIRDIREREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNKSHVKKLMDS-- 660

Query: 628  SFDDFL--------------REGLIEYLDVNEENNALIALYEGDATPDT----------- 662
             +DD++              R+G+IEY+D  EE   +IA+   D                
Sbjct: 661  EYDDYVYDDEQEAYGWSSLVRDGIIEYVDAEEEETIMIAMTPEDLESSKSTLSEAQQKSM 720

Query: 663  ------------------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
                                    TH EI P  ILGV A +IP+P HNQSPRNTYQ AMG
Sbjct: 721  QMEEQEKDPAKRIKPTFSGNLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMG 780

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+
Sbjct: 781  KQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYN 840

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSN 818
             ED+++MN+SS+DRG  R +  + Y  + ++      +   RP R+    + +++ H + 
Sbjct: 841  QEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFERPSRS----DTLRLKHGT- 895

Query: 819  LLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG 878
                 LDDDGL  PG  +   D+ I K +P+      +    Q  ++ R A    +    
Sbjct: 896  --YEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTK-RDASTPLRST-- 950

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            E+ +VD+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +
Sbjct: 951  ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFTSQ 1010

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            GI PDLI+NPH  PSRMTV  +IE L  K     G     S F +      T E +S+ L
Sbjct: 1011 GIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEEVSKLL 1065

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             +HG+   G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP 
Sbjct: 1066 REHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPV 1125

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKA 1117
            EGR+R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K   
Sbjct: 1126 EGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQ 1185

Query: 1118 GICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              C  CKN  NI  + +PYA KLL QEL +MNI PR+
Sbjct: 1186 FECRACKNKTNIYQIHIPYAAKLLFQELMAMNISPRM 1222


>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
 gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
          Length = 1224

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1229 (35%), Positives = 665/1229 (54%), Gaps = 132/1229 (10%)

Query: 23   APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
            AP+ +  D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++           
Sbjct: 23   API-TAEDAWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTET 81

Query: 72   SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE-------- 122
              +     + F  + + +P +   DGV+  L P   RL ++TY++ + V+++        
Sbjct: 82   DNVSRKYEIGFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVD 141

Query: 123  -------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
                   Y   +   +   E   V IGR+PIMLRS  C L    E++L +L ECP D GG
Sbjct: 142  VPGRELKYELIAEESEEESESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGG 201

Query: 176  YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGK 230
            YFII G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K    I   + K
Sbjct: 202  YFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVK 257

Query: 231  MY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPS 276
            +Y             L    + IPI+++ +A+G+  D E+++ +     D +   +L P 
Sbjct: 258  LYGREGSDARTINATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 317

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            +E+     I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         
Sbjct: 318  VED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR 373

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
            K F++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q
Sbjct: 374  KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLASLFKTLFRKLTKDIFRYMQ 433

Query: 393  KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARL 451
            +TV+        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R 
Sbjct: 434  RTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY 486

Query: 452  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
            ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++
Sbjct: 487  TYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS 546

Query: 512  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
               +  P+I+     G+E LE     +  +P++  V  NG+  G HR P    D +R LR
Sbjct: 547  VGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMDTLRTLR 604

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL-- 623
            R G I   VS+  + +++ + I +D GRV RPL I +   +      ++++ H+ +L+  
Sbjct: 605  RKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIAKLMAT 664

Query: 624  ---DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT---------- 662
               D    F+D         L EGL+EY+D  EE   LI++   D  P            
Sbjct: 665  EYQDIEGGFEDAEEYTWTSLLNEGLVEYIDAEEEETILISMQPEDLEPPMENEEVIDDMD 724

Query: 663  --------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                          TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 725  PAKRIRATQHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 784

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+S
Sbjct: 785  YNVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQS 844

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDDDG
Sbjct: 845  SIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDDG 897

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            L APG  +   D+ I K +P+      +   GQ  + +     +      E  +VD+V +
Sbjct: 898  LIAPGVRVSGEDIIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVLI 954

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   ++ED PF+  GI PDLI+NP
Sbjct: 955  TTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINP 1014

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G 
Sbjct: 1015 HAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRGF 1069

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR
Sbjct: 1070 EVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLR 1129

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCKN 1125
             GEMERDC+IA+GA+  + ERLM +SD F V +C  CGL+      NH      C  C N
Sbjct: 1130 FGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGNCGLMSVIAKLNHNQFE--CKGCDN 1187

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              +I  + +PYA KLL QEL +MNI PRL
Sbjct: 1188 KIDIYQIHIPYAAKLLFQELMAMNITPRL 1216


>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
          Length = 1171

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1165 (36%), Positives = 653/1165 (56%), Gaps = 87/1165 (7%)

Query: 42   RGLVKQHLDSFNYFVNTGIRKIV-------------RANDRIVSGIDPSIFLRFKDVRIG 88
            +GLV+Q LDSF+ F+   ++++V              A  +  +  D    + F  + + 
Sbjct: 28   KGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKANTDTIYNISFGQIYLS 87

Query: 89   QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTTMEKNDVVIGRI 144
            +P+MT  DG +  + PH  RL ++TY+AP+ V+++   Y Q        +E     IG +
Sbjct: 88   KPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVDMDPYDQ--------VETPKEFIGMV 139

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  CVL  K + EL  L EC  D GGYFII G+EKVL+ QE++S N V       
Sbjct: 140  PIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKNA 199

Query: 205  GNINASVTSSTETVK------SKTVIQMEK---GKMYLLLNQ------FVKK-IPIMVVM 248
             +  + V  +   V+      S   +QM +   GK  +  NQ      ++++ IP++++ 
Sbjct: 200  ASKYSWVCETRSHVEHGVRPTSTMYVQMYQKSGGKSAITGNQIRAVIPYIRQDIPVVIIF 259

Query: 249  KAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFG 305
            +A+G  +D+E+++ +  D   + L+     S+EE     I  QE AL+++ G+ + S   
Sbjct: 260  RALGFVADREILEHICYDFSDAELMERFKSSLEEA--FVIQEQEVALDFI-GR-RGSAIN 315

Query: 306  SPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
                DR   A  IL+   L +V V ++N   K +++  ++ +++   L +   DD+D+ G
Sbjct: 316  VSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYG 375

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITV 421
            NKRL+L+G L+  LF  LFK +  +V    QK VD           F+L+  I   +IT 
Sbjct: 376  NKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVD-------NGKDFNLTLAIRSRTITN 428

Query: 422  GLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            GL  +L+TGN+ +++    + G++QVL RL++  +L H+ R++    +  K + PR L  
Sbjct: 429  GLRYSLATGNWGMQK-SASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHN 487

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            + WGM+CP +TPEG+A GLVKNLALM +++    + P++        E+LE +  + +  
Sbjct: 488  THWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQII-- 545

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601
            P+S  +  NG  +G HR P      +R LRR   I   VSV  +   + + I +D GRVC
Sbjct: 546  PHSTKIFVNGNWVGVHREPNELIRTLRSLRRCVDIDAEVSVIRDLMNKELRIYTDAGRVC 605

Query: 602  RPLVIADKGISRIKEHHMKELLDGVRS---FDDFLREGLIEYLDVNEENNALIALYEGDA 658
            RPL I +     +++  + +L +   +   + + L +G++E +D  EE   +IA+   D 
Sbjct: 606  RPLFIVEDNQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDV 665

Query: 659  TPDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
               +   TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 666  GTGSQIHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNFRARMDT 725

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            +  +L YPQ+PL+TTR +E + + +L +G NA V + SY+GY+ ED+++MN+S++DRGF 
Sbjct: 726  MANVLNYPQKPLVTTRAMEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFF 785

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL------ILDDDGL 829
            R    + Y  I+Q+  N +          G   E  +     N L L       LD+DGL
Sbjct: 786  RSTFYRCY--IDQE-RNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDNDGL 842

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             APG  +  ND+ I K SPL       S     + R++    +      E  ++D V L 
Sbjct: 843  VAPGTRVSGNDIIIGKTSPLP-----QSEDSSLEQRHQKRDASTALRSHENGIIDSVMLT 897

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
            ++ +G    K   R+ R P++GDKF+SRHGQKG  G   +QED PF+  GI PD+++NPH
Sbjct: 898  TNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPH 957

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMTVG ++E L GK     G     + F +      TV++I++TL   G+  +G +
Sbjct: 958  AIPSRMTVGHLVECLLGKVSSQTGDEGDATPFTDV-----TVQAIADTLHNLGYQKHGNE 1012

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++YSG TG  L A IF+GP +YQ+LKHMV DK+H+R  GP  MLTRQP EGRAR GGLR+
Sbjct: 1013 VMYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRM 1072

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDCLI++G++  + +RL  +SD + V VC +CG++   N +     C TC+N   I
Sbjct: 1073 GEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQI 1132

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRL 1154
            S + +PY+CKLL QEL +M+I PRL
Sbjct: 1133 SQVHIPYSCKLLFQELMAMSIAPRL 1157


>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
          Length = 1234

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1231 (35%), Positives = 657/1231 (53%), Gaps = 137/1231 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ FV T I+++V  +  ++              +   
Sbjct: 24   DCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENKRY 83

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN----------------- 120
             + F  + I +PS T  DG +  + P   RL ++TY++P+ V+                 
Sbjct: 84   EITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKDNE 143

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            +E++Q    + T   +  V +G++PIMLRS  C+L    E E   L ECP D GGYF+I 
Sbjct: 144  LEWIQEEPDKDT---ETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVIN 200

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKS---KTVIQMEK 228
            G+EKVL+ QE+ + N  I+   KK           I +++   +  + S   K   + EK
Sbjct: 201  GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK 258

Query: 229  G----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
            G     +   L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 259  GVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE-- 316

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 317  GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 374  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+++  +   +IT GL  +L+TGN+  +R  M  R G++QVL R ++  TL H+
Sbjct: 434  ---GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHL 490

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LMT ++      P++
Sbjct: 491  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPIL 550

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       + P+S  V  NG+ +G HR P    D MR+LRR+G +   V
Sbjct: 551  GFLRDYGLEVLEDYVPS--NAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEV 608

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---------- 623
            S+  + +++   I +D GRV RPL I D       KG  +I + H+K+LL          
Sbjct: 609  SIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLLRSDELDEDDE 668

Query: 624  ---DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA---------------------- 658
               +   ++   + +G++EY+D  EE   +IA+   D                       
Sbjct: 669  DYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVSESEQQKIQLEEQEL 728

Query: 659  -------------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
                         T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 729  DPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 788

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++M
Sbjct: 789  LTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIM 848

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N+SS+DRG  R +  + Y  I ++      +   +P R    ++ +++ H +      LD
Sbjct: 849  NQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTR----SDTLRLKHGT---YEKLD 901

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            +DGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+
Sbjct: 902  EDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTK-RDASTPLRST--ESGIVDQ 958

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PDLI
Sbjct: 959  VLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLI 1018

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFS 1004
            +NPH  PSRMTV  +IE L  K     G F      G+ S   D T E IS  L  HG+ 
Sbjct: 1019 INPHAIPSRMTVAHLIECLLSKVSSLSG-FE-----GDASPFTDVTTEQISTLLRDHGYQ 1072

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+
Sbjct: 1073 SRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRD 1132

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTC 1123
            GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +C
Sbjct: 1133 GGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSC 1192

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1193 KNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223


>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
 gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
          Length = 1228

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1232 (35%), Positives = 660/1232 (53%), Gaps = 142/1232 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I++++  +  ++              +   
Sbjct: 21   DCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTSDKDNKNKRY 80

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
             + F  + I +PS T  DG +  + P   RL ++TY+AP+ V++                
Sbjct: 81   EITFGKMYISKPSQTEGDGTTHLMFPQEARLRNLTYSAPLYVDMSKKVFESDDNNRKDNE 140

Query: 122  -----EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
                 + VQG  ++      + V +G++PIM+RS  C+L    E E+  L ECP D GGY
Sbjct: 141  LEWKEQIVQGEDSD------SKVYMGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGY 194

Query: 177  FIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKM 231
            F+I G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+
Sbjct: 195  FVINGSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIE--KGSRLISSMQIKL 250

Query: 232  Y-------------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLP 275
            Y               L    + IPI++V +A+G+  D ++++ +     D +   +L P
Sbjct: 251  YGRDEKSSSARTIRATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKP 310

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
             +EE     I  +E AL+++    +R   G     R   A  IL+   L N+        
Sbjct: 311  CVEE--GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFET 365

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV 395
             K F++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +
Sbjct: 366  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYM 425

Query: 396  DIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFI 454
               +        F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++ 
Sbjct: 426  QRCVEN---DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYS 482

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   
Sbjct: 483  STLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 542

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
               P+ S     G+E LE       ++P++  V  NG+ +G HR P    D MR LRR G
Sbjct: 543  PSEPISSFLRDWGLEPLEDYVPS--NSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNG 600

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---- 623
             I   VS+  + +++ + I +D GRV RPL I D       KG  ++++ H+ +LL    
Sbjct: 601  DISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLRKEHVNQLLESSY 660

Query: 624  DGVR-----SFDDFLREGLIEYLDVNEENNALIALYEGD--------------------- 657
            DG+      ++   +REG++EY+D  EE   +IA+   D                     
Sbjct: 661  DGLDDEPTYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQQDLQMEEQ 720

Query: 658  --------------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
                           T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 721  ELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 780

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED++
Sbjct: 781  VFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 840

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +      
Sbjct: 841  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YEK 893

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +V
Sbjct: 894  LDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRS--TESGIV 950

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PD
Sbjct: 951  DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPD 1010

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            LI+NPH  PSRMTV  +IE L  K     G     S F +      T E+IS+ L +HG+
Sbjct: 1011 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAISKLLREHGY 1065

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R
Sbjct: 1066 QSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1125

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICST 1122
            +GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC  CGL+    N K     C +
Sbjct: 1126 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMTVIANLKKNQFECRS 1185

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1186 CKNKTNIYQIHIPYAAKLLFQELMAMNITPRL 1217


>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
 gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
          Length = 1232

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1229 (35%), Positives = 661/1229 (53%), Gaps = 139/1229 (11%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSIFL 80
            + ++  F + +GLV Q LDSF+ F+ T I+++V  +  ++              +    +
Sbjct: 26   WTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRRYEI 85

Query: 81   RFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN-----------------IE 122
             F  + I +P+ T  DG +  + P   RL ++TY++P+ V+                 +E
Sbjct: 86   TFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVLKSDDNNRVDNELE 145

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            +V+    ++    K  V +G++PIMLRS  C+L G  E E   L ECP D GGYF+I G+
Sbjct: 146  WVEEKIEDEGPQTK--VYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGYFVINGS 203

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY----- 232
            EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+Y     
Sbjct: 204  EKVLIAQERSAAN--IVQVFKKAAPSPISHIAEIRSAIE--KGSRLISSMQIKLYGRDDK 259

Query: 233  --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                      L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 260  GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE-- 317

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 318  GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 374

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 375  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 434

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+
Sbjct: 435  ---DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 491

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P++
Sbjct: 492  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSSEPIL 551

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR G I   V
Sbjct: 552  YFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGDISPEV 609

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFDDF- 632
            S+  + +++   I +D GRV RPL I D       KG  ++K+ ++ +L++    +DDF 
Sbjct: 610  SIIRDIREKEFKIFTDAGRVYRPLFIVDDDAESETKGELKLKKENVHKLINA--EYDDFG 667

Query: 633  -------------LREGLIEYLDVNEENNALIA----------------------LYEGD 657
                         + +G++EY+D  EE   +IA                      L E +
Sbjct: 668  DDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTPEDLETSRSTLSETEQKDMQLEEQE 727

Query: 658  ATPDT-----------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
              P             TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG   
Sbjct: 728  VDPAKRIKPTLGLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 787

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN
Sbjct: 788  TNYAVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 847

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +      LDD
Sbjct: 848  QSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPTRS----DTLRLRHGT---YEKLDD 900

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+V
Sbjct: 901  DGLIAPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTK-RDASTPLRST--ESGIVDQV 957

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +G+ PDLI+
Sbjct: 958  LLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLII 1017

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L  K     G     S F +      T E++S+ L +HG+   
Sbjct: 1018 NPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAVSKLLREHGYQSR 1072

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG
Sbjct: 1073 GFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1132

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKN 1125
            LR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +CKN
Sbjct: 1133 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKN 1192

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1193 KTNIYQIHIPYAAKLLFQELMAMNISPRL 1221


>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
          Length = 1104

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1098 (37%), Positives = 624/1098 (56%), Gaps = 65/1098 (5%)

Query: 76   PSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTT 133
            P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E+  
Sbjct: 34   PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 93

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
             +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++
Sbjct: 94   TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 153

Query: 194  KNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLN 236
             N V +   K       G   + + +S+    +  V  + +G           ++   L 
Sbjct: 154  TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 213

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
               +++PI++V +A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL 
Sbjct: 214  YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALN 271

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            ++  +  +   G     R   A  +L+   L +V V +     K +++  M+ R++ A L
Sbjct: 272  FIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAL 329

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+
Sbjct: 330  GRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFN 382

Query: 410  LSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    
Sbjct: 383  LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIG 442

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +
Sbjct: 443  RDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 502

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEK 587
            E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR   I    VS+  + +
Sbjct: 503  ENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIR 560

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVN 644
            +R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+ D +  G++EY+D  
Sbjct: 561  EREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTL 620

Query: 645  EENNALIALYEGDATPDT-------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAM 697
            EE   ++A+   D            TH EI P  ILGV A +IP+P HNQSPRNTYQ AM
Sbjct: 621  EEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM 680

Query: 698  GKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGY 757
            GKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY
Sbjct: 681  GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGY 740

Query: 758  DIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHS 817
            + ED+++MN+S++DRGF R +  + Y     K      +   +P R     E  Q + H+
Sbjct: 741  NQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA 795

Query: 818  NLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 877
              +   LDDDGL APG  +  +DV I K   L      +     T+ RY     +     
Sbjct: 796  --IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE---GTNRRYTKRDCSTFLRT 850

Query: 878  GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 937
             ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+ 
Sbjct: 851  SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC 910

Query: 938  RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISET 997
             GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  
Sbjct: 911  EGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNL 966

Query: 998  LVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP 1057
            L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP
Sbjct: 967  LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1026

Query: 1058 TEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKA 1117
             EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CG++   N +   
Sbjct: 1027 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHT 1086

Query: 1118 GICSTCKNGDNISSMKLP 1135
              C  C+N   IS +++P
Sbjct: 1087 YECRGCRNKTQISLVRMP 1104


>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
 gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
          Length = 1234

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1231 (35%), Positives = 657/1231 (53%), Gaps = 137/1231 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ FV T I+++V  +  ++              +   
Sbjct: 24   DCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENKRY 83

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN----------------- 120
             + F  + I +PS T  DG +  + P   RL ++TY++P+ V+                 
Sbjct: 84   EITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKDNE 143

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            +E++Q    + T   +  V +G++PIMLRS  C+L    E E   L ECP D GGYF+I 
Sbjct: 144  LEWIQEEPDKDT---ETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVIN 200

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKS---KTVIQMEK 228
            G+EKVL+ QE+ + N  I+   KK           I +++   +  + S   K   + EK
Sbjct: 201  GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK 258

Query: 229  G----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
            G     +   L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 259  GVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE-- 316

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 317  GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 374  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+++  +   +IT GL  +L+TGN+  +R  M  R G++QVL R ++  TL H+
Sbjct: 434  ---GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHL 490

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LMT ++      P++
Sbjct: 491  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPIL 550

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       + P+S  V  NG+ +G HR P    D MR+LRR+G +   V
Sbjct: 551  GFLRDYGLEVLEDYVPS--NAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEV 608

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVR------ 627
            S+  + +++   I +D GRV RPL I D       KG  +I + H+K+LL          
Sbjct: 609  SIIRDIREKEFKIFTDAGRVYRPLFIVDDNPESETKGELKITKEHIKQLLRSDELDEDDE 668

Query: 628  -------SFDDFLREGLIEYLDVNEENNALIALYEGD----------------------- 657
                   ++   + +G++EY+D  EE   +IA+   D                       
Sbjct: 669  DYDNTRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKDSVSESEQQKIQLEEQEL 728

Query: 658  ------------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
                        +T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 729  DPGKRIKPTTSGSTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 788

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++M
Sbjct: 789  LTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIM 848

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N+SS+DRG  R +  + Y  I ++      +   +P R+    + +++ H +      LD
Sbjct: 849  NQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRS----DTLRLKHGT---YEKLD 901

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            +DGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+
Sbjct: 902  EDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTK-RDASTPLRST--ESGIVDQ 958

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PDLI
Sbjct: 959  VLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLI 1018

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFS 1004
            +NPH  PSRMTV  +IE L  K     G F      G+ S   D T E IS  L  HG+ 
Sbjct: 1019 INPHAIPSRMTVAHLIECLLSKVSSLSG-FE-----GDASPFTDVTTEQISTLLRDHGYQ 1072

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+
Sbjct: 1073 SRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRD 1132

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTC 1123
            GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +C
Sbjct: 1133 GGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSC 1192

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            KN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1193 KNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1223


>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1238

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1227 (35%), Positives = 656/1227 (53%), Gaps = 131/1227 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ T I+++V  +  ++              +   
Sbjct: 30   DCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSESDHENRRY 89

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
             + F  + I +PS T  DG +  + P   RL ++TY++P+ V++        +    E N
Sbjct: 90   EITFGKIYISKPSQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVFKSDDNKRKENN 149

Query: 138  D----------------VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            +                V +G++PIMLRS  C+L    E +   L ECP D GGYF+I G
Sbjct: 150  ELDWIEEKVEDEDPRTKVYLGKVPIMLRSKFCMLRDLGEHDFYELKECPYDMGGYFVING 209

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKS---KTVIQMEKG 229
            +EKVL+ QE+ + N  I+   KK           I +++   +  + S   K   + EKG
Sbjct: 210  SEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEKG 267

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECAN 282
                 +   L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE   
Sbjct: 268  VSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE--G 325

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
              I  +E AL+++    +R   G     R   A  IL+   L N+         K F++ 
Sbjct: 326  FVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLG 382

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +   
Sbjct: 383  YMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN- 441

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMT 461
                 F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+ 
Sbjct: 442  --DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLR 499

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LMT ++      P++ 
Sbjct: 500  RTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILY 559

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                 G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR G I   VS
Sbjct: 560  FLEEWGMESLEDYVPS--NSPDSTRVFVNGVWVGTHRDPVNLVDTMRSLRRRGDISPEVS 617

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFDDF-- 632
            +  + +++   I +D GRV RPL I D       KG  ++++ H+ +LL+    +DD+  
Sbjct: 618  IIRDIREKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQKEHVLKLLNS--EYDDYDG 675

Query: 633  ---------LREGLIEYLDVNEENNALIALYEGD-------------------------- 657
                     + +G++EY+D  EE   +IA+   D                          
Sbjct: 676  DEGYNWTSLVNDGIVEYVDAEEEETIMIAMTPEDLEASKNTLSQTQIKAMQVEEQELDPA 735

Query: 658  ---------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                     AT   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 736  KRIKPVFSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 795

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+S
Sbjct: 796  YSVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQS 855

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R +  + Y  + ++      +   +P R    ++ +++ H +      LDDDG
Sbjct: 856  SIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSR----SDTLRLKHGT---YEKLDDDG 908

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            L APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+V L
Sbjct: 909  LIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRST--ESGIVDQVLL 965

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +GI PDLI+NP
Sbjct: 966  TTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINP 1025

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMTV  +IE L  K     G     S F +      T E++S  L +HG+   G 
Sbjct: 1026 HAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDV-----TAEAVSRLLREHGYQSRGF 1080

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR
Sbjct: 1081 EVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLR 1140

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKNGD 1127
             GEMERDC+IA+GA+  + ERLM +SD F V VC  CGL+    N K     C +CKN  
Sbjct: 1141 FGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCGLMSVIANLKKNQFECRSCKNKT 1200

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
            NI  + +PYA KLL QEL +MNI PR+
Sbjct: 1201 NIYQIHIPYAAKLLFQELMAMNISPRM 1227


>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1239

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1233 (35%), Positives = 663/1233 (53%), Gaps = 112/1233 (9%)

Query: 9    SPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND 68
            +P  +QL D+ ++        D + ++  + K  GLV Q + SF+ FVN  +++I+  N 
Sbjct: 34   NPIVQQLQDQNEINQD-----DAWTVIRSYFKQHGLVSQQISSFDRFVNFSLQEIISENG 88

Query: 69   RIVSGIDPSIFLRFK----------DVRIGQPSMTV-------DGVSEKLNPHMCRLSDM 111
            ++     P   L  +          +V+  Q S+         D     + PH  R+ ++
Sbjct: 89   QLQIPYTPQYQLNKQQHETDKDIVYEVQFKQASVNSYPRLQEEDDTYSPIFPHEARMRNL 148

Query: 112  TYAAPILVNIEYV---------------QGSHTEKTTMEKND---VVIGRIPIMLRSCRC 153
            TYA  + V+I                  Q     K  M++ D   V IG+IP+MLRS  C
Sbjct: 149  TYATEVFVDITLSKKELDKEMIIDPKTGQRHQKVKQVMQEYDEARVTIGKIPVMLRSKFC 208

Query: 154  VLYGKDEAELARLG-ECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK---KGNINA 209
             L+  ++ +  + G +C  D GGYFII G+EKV++ QE+++ N+V +   K   K +  A
Sbjct: 209  QLHSLNQMQRMKEGKDCQYDQGGYFIINGSEKVIVAQERMANNQVNVFHKKPPSKYSWVA 268

Query: 210  SVTSSTETVKS--KTVIQMEKGK---------------------MYLLLNQFVKKIPIMV 246
             + S  E      + ++   K +                     +Y+ L    ++IP+++
Sbjct: 269  EIRSQAENSNKPPQQLLLFLKSRYKSSGPGFGQANHSTSKFGQSIYVSLPMIKEQIPLVI 328

Query: 247  VMKAMGMESDQEVVQMV----GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            + +A+G  SD++++  V      DP     L  S+EE   +D  TQE A++Y+    KR 
Sbjct: 329  LFRALGTISDRQILSRVCFDCPDDPEMGEALRASLEESKIVD--TQEDAMDYI---AKRG 383

Query: 303  TFGSPPNDREGRAFS---ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
            +  + P  RE R      +L   FL ++     +   K F++  M+ ++++A L +   D
Sbjct: 384  S--AQPYIRENRLTYTKLMLESEFLPHISTLPQDMPKKSFFLGYMVNKLLKAFLGRIDED 441

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+DY G KRL+++G L++  F  LF+     +++ +   +   S   +  L   I +D I
Sbjct: 442  DRDYYGKKRLDMAGSLLATNFRQLFRNFTDTMRRILKHEID--SGKEQIVLQNSIKQDII 499

Query: 420  TVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL   L+TGN+   K   + + G+ QVL RL+F  +L H+ R++    K+ K++ PR 
Sbjct: 500  TRGLRTALATGNWGRDKNGDVQKTGVAQVLNRLTFASSLSHLRRLNTPIAKTGKLAKPRQ 559

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG ACGLVKNLALMT V+   +   LIS+   LGV+ L+ ++  +
Sbjct: 560  LHNTHWGMICPAETPEGAACGLVKNLALMTFVSVGSQPSYLISILEDLGVDRLDDMN--Q 617

Query: 539  LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
            + +     +  NG   G H  P      M KLRR  +I + +++  + + + +   +D G
Sbjct: 618  VGSGRQVRIFVNGNWFGTHANPDDLIKSMLKLRRTHQIPKEIAIVRDLQNKEIRFYTDSG 677

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
            RV RPL I      ++K+ H+  L     +FDD ++EGL+E+LDV EE  A+IA++  D 
Sbjct: 678  RVQRPLFIVQNNNIKLKKKHISLLEKNEYNFDDTIKEGLVEFLDVEEEETAMIAMHLQDL 737

Query: 659  TPDT-------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                       TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 738  KSKKENRVTTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNHSI 797

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+L ++L YPQ+PL+ T++++ + + +L AG NA VA+  Y+GY+ ED+I+ N+SS+D
Sbjct: 798  RMDTLAHVLYYPQKPLVCTKSMDFLHFKELPAGSNAIVAIACYTGYNQEDSIIFNQSSID 857

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R    + Y+   +K      +R   PD       +             LD DGL  
Sbjct: 858  RGIFRSAFFRTYSETQEK-----DERFEIPDFKKCSGRKHGTYDK-------LDIDGLIN 905

Query: 832  PGEIIKPNDVYINKESPLETR----GSIMSPTGQTDSRYRSARQTYKG--PDGETCVVDR 885
            PG  +  +DV I K + ++      G+  S  G     +  +R+         ET  +D+
Sbjct: 906  PGNQVSGDDVIIGKTTAIKMNENMNGNANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQ 965

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  ++ G+  +K  +R  R P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI
Sbjct: 966  VVLTVNEQGERFVKIKMRSERIPQIGDKFASRHGQKGTVGMTYRQEDMPFTREGIVPDLI 1025

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+G +IE LG K     G     + F +  G  DTVE IS+ L + G+  
Sbjct: 1026 INPHAIPSRMTIGHLIECLGSKVASLTGTEGDATPF-QKVGVKDTVEQISKRLHECGYQL 1084

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G  G  ++  IF+GP YYQ+LKHMV DK+H+RG GP  +LTRQPTEGR+R+G
Sbjct: 1085 RGNEVMYNGFNGKKMEVMIFLGPTYYQRLKHMVADKIHSRGRGPTQILTRQPTEGRSRDG 1144

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC+I++GA+  + ERL   SD + + +C VCGL+   N   +   C  C+N
Sbjct: 1145 GLRFGEMERDCMISHGAARFLKERLFDVSDFYRIHMCEVCGLICVGNLSEQRFECYNCQN 1204

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
               I  + +PYACKLL+QEL +M I PRLK+ E
Sbjct: 1205 TSKICQVNIPYACKLLMQELMAMQIAPRLKVHE 1237


>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1181 (35%), Positives = 652/1181 (55%), Gaps = 91/1181 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF-----------L 80
            + ++  +   +GLV+Q L+SF+ F+   +++IV  +  I    +P+             +
Sbjct: 26   WTIITAYFDEKGLVRQQLESFDEFITMSVQRIVEESPVIELQSEPNYNAGEPEEPTKYQI 85

Query: 81   RFKDVRIGQPSMTVDGVS-EKLNPHMCRLSDMTYAAPILVNIEYVQ-GSHTEKTTMEKND 138
            +F+ + + +P+    G     L P+  RL ++TY AP+ V+I      S   +   EK++
Sbjct: 86   KFEQIYLSKPTHWEVGTGPNPLMPNEARLRNLTYCAPLYVDINRTTIRSDDPRPHEEKHE 145

Query: 139  -VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYF+I G+EKV++ QE+++ N V
Sbjct: 146  KIFIGQIPIMLRSEYCLLSGLSDRDLTELNECPLDPGGYFVINGSEKVVIAQEKMANNTV 205

Query: 198  II--DTDKKGNINASVTSSTETVKSKT---------------VIQMEKGKMYLLLNQFVK 240
             +    D K  + A   S  E     T               V +   G+    +  +VK
Sbjct: 206  YVFEKKDSKYELTAECRSCLENSSRPTSTIWINLLARSGGTGVKKSAIGRRIAAILPYVK 265

Query: 241  K-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
            +  PI++V +A+G  SD+++++ +     DP    ++ PSI+E     I  +  AL+++ 
Sbjct: 266  QDTPIIIVFRALGFVSDRDILEHIVYDFDDPDMMEMVKPSIDEA--FVIQEEAVALDFIG 323

Query: 297  GKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
             +  R     P   RE R   A  IL+   L +V +       K +++  M+ R+++A L
Sbjct: 324  KRGAR-----PGVTREKRMKYAKEILQKELLPHVGISEYCETKKAYFLGYMVNRILQAGL 378

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISE--VQKTVDIILSKPSRSSRFDLS 411
             +   DD+D+ GNKR++L+G L++ LF  LFK +  +  +    +I   KP      ++ 
Sbjct: 379  GRRGEDDRDHYGNKRMDLAGPLLAFLFRSLFKKLTKDARIAAQKEIEKGKP-----MNVL 433

Query: 412  QFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
              I    IT GL+ +L+TGN+ D ++    R G++QVL RL++  +L H+ R++    + 
Sbjct: 434  TAIKTKIITDGLKYSLATGNWGDQQKASQCRPGVSQVLNRLTYASSLSHLRRLNSPVGRD 493

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
             K++ PR L  +QWGM+CP +TPEG A GLVKNLALM++++   +  P++       +E+
Sbjct: 494  GKLAKPRQLHSTQWGMVCPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMEN 553

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQR 589
            LE ++   + +     V  NG  +G HR P+     +RKLRR   I    VS+  + + R
Sbjct: 554  LEEITPNSISDATKIFV--NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSMVRDIRNR 611

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEE 646
             + I +D GR+CRPL+I +     +K+ H+  L D      S+ + ++ G++EY+D  EE
Sbjct: 612  EIRIYTDAGRICRPLLIVEDQRLLLKKDHLAMLKDPEYSNYSWTELIKAGVVEYIDTLEE 671

Query: 647  NNALIALYEGDATPDT-------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
               + A+     TPD              TH EI P  ILGV A ++P+P HNQSPRNTY
Sbjct: 672  ETIMCAM-----TPDEVKKTDEMAYCRSYTHCEIHPAMILGVCASIVPFPDHNQSPRNTY 726

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            Q AMGKQA+G    N   RMD++  +  YPQ+PL  TR++E + + +L AG N  VA+  
Sbjct: 727  QSAMGKQAVGVFVTNFQIRMDTMGNICFYPQKPLCVTRSMEYLRFSELPAGINTIVALSC 786

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            Y+GY+ ED+++MN +SLDRGF R I  + Y     K       +IL P+ T    +R   
Sbjct: 787  YTGYNQEDSLIMNMASLDRGFHRSIYYRGYRDTENK-------KILDPEETFEKPDRATT 839

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
                + +   L+DDGL APG  I  +DV I K   L+     + PT +   +Y     + 
Sbjct: 840  QGMRHAMYDKLEDDGLIAPGTRISGDDVMIGKTIALQDGDDALDPTAK---KYTKKDASL 896

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
                 E  ++D V +  +++G   +K  +R  R PE+GDKF+SRHGQKG  G +++ ED 
Sbjct: 897  FAKPTEKGIIDSVMVTINEDGYKFVKIRLRSVRIPEVGDKFASRHGQKGTNGIMLRCEDM 956

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
             F+  G+ PDLI+NPH  PSRMT+G + E L  K G   G     + F  PS    TV+ 
Sbjct: 957  LFTPDGMQPDLIVNPHAIPSRMTIGHLFECLTSKVGAIKGEIGDATPFN-PSV---TVQK 1012

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            +S+ L ++ +   G +++YSG TG  +   +F GP YYQ+LKHMV DK+H+R  GP  +L
Sbjct: 1013 VSDILHEYEYQQRGNEVLYSGFTGRKMNTQVFFGPTYYQRLKHMVNDKIHSRARGPVQLL 1072

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
             RQP EGR+R+GGLR GEMERDC IA+GAS  + ERL   SDP+ V VC +CGL+   N 
Sbjct: 1073 NRQPMEGRSRDGGLRFGEMERDCQIAHGASQFLKERLFEVSDPYRVHVCNLCGLICVANL 1132

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               +  C +C N  NIS +++PYACKLL QEL SM I PR+
Sbjct: 1133 TSNSFECRSCSNKTNISQVRMPYACKLLFQELMSMQIAPRM 1173


>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1232 (35%), Positives = 661/1232 (53%), Gaps = 140/1232 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ T I+++V  +  ++              +   
Sbjct: 24   DCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRRY 83

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN----------------- 120
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V+                 
Sbjct: 84   EIAFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVFKSDDNNRKDNE 143

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            +E+++ S   +    K  V +G++PIMLRS  C+L G  E E   L ECP D GGYF+I 
Sbjct: 144  LEWIEESVENEEPQTK--VYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGYFVIN 201

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY--- 232
            G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+Y   
Sbjct: 202  GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--KGSRLISSMQIKLYGRD 257

Query: 233  ----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEE 279
                        L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE
Sbjct: 258  DKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE 317

Query: 280  CANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCF 339
                 I  +E AL+++    +R   G     R   A  IL+   L N+         K F
Sbjct: 318  --GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAF 372

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIIL 399
            ++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LF+ +  ++   +   +
Sbjct: 373  FLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCV 432

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLG 458
                    F+ +  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL 
Sbjct: 433  EN---DKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 489

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P
Sbjct: 490  HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEP 549

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            ++      G+E LE       ++P +  V  NG+ +G HR P    + MR LRR G I  
Sbjct: 550  ILYFLEEWGMEPLEDYVPS--NSPEATRVFVNGVWVGTHREPAHLVETMRNLRRRGDISP 607

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFDD 631
             VS+  + ++R   I +D GRV RPL I D       KG  ++K+ H+ +LL+    +D+
Sbjct: 608  EVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKEHVNKLLNA--EYDE 665

Query: 632  F--------------LREGLIEYLDVNEENNALIA----------------------LYE 655
            F              L +G++EY+D  EE   +IA                      L E
Sbjct: 666  FSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSLSETQQKDLQLEE 725

Query: 656  GDATPDT------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
             ++ P              TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 726  QESDPAKRIKPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 785

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED++
Sbjct: 786  VFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 845

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +      
Sbjct: 846  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YEK 898

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +V
Sbjct: 899  LDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRST--ESGIV 955

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +G+ PD
Sbjct: 956  DQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPD 1015

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            LI+NPH  PSRMTV  +IE L  K     G     S F +      TVE+IS+ L +HG+
Sbjct: 1016 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TVEAISKLLREHGY 1070

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R
Sbjct: 1071 QSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1130

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICST 1122
            +GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +
Sbjct: 1131 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRS 1190

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1191 CKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1222


>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1238

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1229 (35%), Positives = 656/1229 (53%), Gaps = 131/1229 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I+++V  +  ++              +   
Sbjct: 26   DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQHTSEKDHDNKRY 85

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN-------------IEYV 124
             + F  + I +P+ T  DG +  + P   RL ++TY++PI V+             I+  
Sbjct: 86   EINFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPIYVDMTKRVFTSDDNKRIDNE 145

Query: 125  QGSHTEKTTMEK--NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
               H      EK  + V +G++PIMLRS  C+L    E E   L ECP D GGYF+I G+
Sbjct: 146  LEWHEIDVEGEKKTSKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGS 205

Query: 183  EKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKS---KTVIQMEKGK 230
            EKVL+ QE+ + N  I+   KK           I +++   +  + S   K   + EKG 
Sbjct: 206  EKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEKGT 263

Query: 231  ----MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANL 283
                +   L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE    
Sbjct: 264  SARTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDQNDWQMLEMLKPCVEE--GF 321

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++    +R   G     R   A  IL+   L N+         K F++  
Sbjct: 322  VIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGY 378

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +    
Sbjct: 379  MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN-- 436

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTR 462
                F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+ R
Sbjct: 437  -DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 495

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P++S 
Sbjct: 496  TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSDPILSF 555

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                G+E LE  +    ++P+   V  NG+ +G HR P    D MR LRR G I   VS+
Sbjct: 556  LRDWGLEPLEDYT--PANSPDVTRVFVNGVWVGVHREPASLVDYMRDLRRNGDISPEVSL 613

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVR-------- 627
              + +++   I +D GRV RPL I D       KG  ++++ H+ +LL+           
Sbjct: 614  IRDIREKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKEHVNQLLESSYEGYDEDDE 673

Query: 628  ------SFDDFLREGLIEYLDVNEENNALIALYEGD------------------------ 657
                  ++   ++EG++EY+D  EE   +IA+   D                        
Sbjct: 674  DAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTPDDLEASKSSLTETQQQNLQMEEQELD 733

Query: 658  -----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
                        T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG   
Sbjct: 734  PAKRIKPTNSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 793

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN
Sbjct: 794  TNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 853

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +      LDD
Sbjct: 854  QSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YEKLDD 906

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+V
Sbjct: 907  DGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRST--ESGIVDQV 963

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  G+ PDLI+
Sbjct: 964  LLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGVVPDLII 1023

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L  K     G     S F +      T E++S+ L +HG+   
Sbjct: 1024 NPHAIPSRMTVAHLIECLLSKVSALSGLEGDASPFTDV-----TAEAVSKLLREHGYQSR 1078

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG
Sbjct: 1079 GFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1138

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKN 1125
            LR GEMERDC+IA+GA+  + ERLM +SD F V VC VCGL+    N K     C +CKN
Sbjct: 1139 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKN 1198

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1199 KTNIYQIHIPYAAKLLFQELMAMNITPRL 1227


>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1232 (35%), Positives = 661/1232 (53%), Gaps = 140/1232 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ T I+++V  +  ++              +   
Sbjct: 24   DCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRRY 83

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN----------------- 120
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V+                 
Sbjct: 84   EIAFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVFKSDDNNRKDNE 143

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            +E+++ S   +    K  V +G++PIMLRS  C+L G  E E   L ECP D GGYF+I 
Sbjct: 144  LEWIEESVENEEPQTK--VYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGYFVIN 201

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY--- 232
            G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+Y   
Sbjct: 202  GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--KGSRLISSMQIKLYGRD 257

Query: 233  ----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEE 279
                        L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE
Sbjct: 258  DKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE 317

Query: 280  CANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCF 339
                 I  +E AL+++    +R   G     R   A  IL+   L N+         K F
Sbjct: 318  --GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAF 372

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIIL 399
            ++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LF+ +  ++   +   +
Sbjct: 373  FLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCV 432

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLG 458
                    F+ +  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL 
Sbjct: 433  EN---DKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 489

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P
Sbjct: 490  HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEP 549

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            ++      G+E LE       ++P +  V  NG+ +G HR P    + MR LRR G I  
Sbjct: 550  ILYFLEEWGMEPLEDYVPS--NSPEATRVFVNGVWVGTHREPAHLVETMRNLRRRGDISP 607

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFDD 631
             VS+  + ++R   I +D GRV RPL I D       KG  ++K+ H+ +LL+    +D+
Sbjct: 608  EVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKEHVNKLLNA--EYDE 665

Query: 632  F--------------LREGLIEYLDVNEENNALIA----------------------LYE 655
            F              L +G++EY+D  EE   +IA                      L E
Sbjct: 666  FSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPEDLEASRSSLSETQQKNLQLEE 725

Query: 656  GDATPDT------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
             ++ P              TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 726  QESDPAKRIRPTFSGSNTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMG 785

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED++
Sbjct: 786  VFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSM 845

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +      
Sbjct: 846  IMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRS----DTLKLKHGT---YEK 898

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +V
Sbjct: 899  LDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRST--ESGIV 955

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +G+ PD
Sbjct: 956  DQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPD 1015

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            LI+NPH  PSRMTV  +IE L  K     G     S F +      TVE++S+ L +HG+
Sbjct: 1016 LIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TVEAVSKLLREHGY 1070

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  L A IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R
Sbjct: 1071 QSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1130

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICST 1122
            +GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +
Sbjct: 1131 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRS 1190

Query: 1123 CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1191 CKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1222


>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Apis mellifera]
          Length = 1154

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1170 (36%), Positives = 643/1170 (54%), Gaps = 98/1170 (8%)

Query: 38   FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSG-IDPSI--FLRFKDVR 86
            +   +GLV+Q LDSF+ F+   +++IV  + +I         SG I+  +   L+F+ + 
Sbjct: 33   YFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIENPVRHLLKFEQIY 92

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
            + +P+    DG    + P+  RL ++TY+AP+ V+I + +     +    +     IG+I
Sbjct: 93   LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKI 152

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V + + K 
Sbjct: 153  PIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 212

Query: 205  GN------INASVTSSTETVKSKTVIQMEK----------GKMYLLLNQFVKK-IPIMVV 247
            G       I + +  S+    +  +  M K          G+  + +  ++K+ IPIM+V
Sbjct: 213  GKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIV 272

Query: 248  MKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF 304
             +A+G  +D+++++ +     DP    ++ PS++E     I  Q  AL ++  +  R   
Sbjct: 273  FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARP-- 328

Query: 305  GSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            G     R   A  IL+   L +V + +     K +++  +                    
Sbjct: 329  GVTKEKRIKYAREILQKEMLPHVGIRDFCETKKAYFLEFI-------------------- 368

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
             NKRL+L+G L++  F  LFK ++ EV    QK +D       R   F+L   I    IT
Sbjct: 369  -NKRLDLAGPLLAFXFRGLFKNLMKEVRLYAQKFID-------RGKDFNLELAIKTKIIT 420

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ RV+    +  K++ PR L
Sbjct: 421  DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQL 480

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGMLCP +TPEG A GLVKNLALM +++   +  P++       +E+LE ++   +
Sbjct: 481  HNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 540

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGG 598
             +     V  NG  +G HR P      +RKLRR   I    VS+  + + R + I +D G
Sbjct: 541  ADATKIFV--NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 598

Query: 599  RVCRPLVIADKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            R+ RPL+I +     +K+ H   +KE       + + +  G++EY+D  EE   +IA+  
Sbjct: 599  RISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSP 658

Query: 656  GDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
             D   +         TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 659  EDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 718

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++++N 
Sbjct: 719  NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 778

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            S+++RGF R +  + Y     K      ++  +P R      R       N +   LDDD
Sbjct: 779  SAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR-------NAIYDKLDDD 831

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +DV I K   L      +  T +  ++ R A    +  + ET +VD+V 
Sbjct: 832  GIIAPGIRVSGDDVVIGKTITLPEADDELDSTTKRFTK-RDASTFLR--NSETGIVDQVM 888

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  +  G    K  +R  R P++GDKF+SRHGQKG CG   +QED PFS  G+ PD+I+N
Sbjct: 889  LTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIIN 948

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G +IE + GK  VS  +   G A   P   A  V+ IS  L ++G+   G
Sbjct: 949  PHAIPSRMTIGHLIECIQGK--VSANKGEIGDA--TPFNDAVNVQKISTLLQEYGYQLRG 1004

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  + A +F+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGRAR+GGL
Sbjct: 1005 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1064

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGD 1127
            R GEMERDC I++GA+  + ERL   SDP+ + +C  CGL+   N +     C  CKN  
Sbjct: 1065 RFGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKT 1124

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             IS ++LPYA KLL QEL +MNI PRL +A
Sbjct: 1125 QISQIRLPYAAKLLFQELMAMNIAPRLMVA 1154


>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris CBS
            7435]
          Length = 1227

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1230 (35%), Positives = 666/1230 (54%), Gaps = 134/1230 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ T I+ +V    R++             I+   
Sbjct: 16   DCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEKDNINKRY 75

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--------------- 122
             +RF  + + +P+MT  DG +  + P   RL ++TY++P+ +++E               
Sbjct: 76   EIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTSIDDEGNPNA 135

Query: 123  ---YVQGSHTEKTTMEK-NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
               + Q     K  +E+ N V IG++PIMLRS  C L   DE +L ++ ECP D GGYF+
Sbjct: 136  TLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKECPYDMGGYFV 195

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMYL 233
            I G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+Y 
Sbjct: 196  INGSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--KGSRLISTMQIKLYG 251

Query: 234  LLNQ-----------FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
              ++           +VK+ IPI++V +A+G+  D E++Q +     D +   +L P IE
Sbjct: 252  REDKGTGRTIKATLPYVKQDIPIVIVFRALGVVPDGEILQHICYDENDWQMLEMLKPCIE 311

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  +E AL+++ G+   +  G     R   A  IL+   L ++         K 
Sbjct: 312  E--GFVIQDKEVALDFI-GRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGFETRKT 368

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDII 398
            F++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LF+ +  E+ + +   
Sbjct: 369  FFLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYRYMQRC 428

Query: 399  LSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTL 457
            +        F+L+  +   +IT GL+ +L+TGN+  ++  M  R G++QVL R ++  TL
Sbjct: 429  IET---DRDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 485

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
             H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+L++ ++      
Sbjct: 486  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPSE 545

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIG 577
            P+I+     G+E LE    +   +  S  +  NG+  G HR P      MR LRR+G I 
Sbjct: 546  PIINFLEEWGMEPLE--DYDPAQHTKSTRIFVNGVWTGIHRDPSMLVSTMRDLRRSGAIS 603

Query: 578  EFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDG----- 625
              VS+  + ++R   I +D GRV RPL I +       KG  RI + H++++  G     
Sbjct: 604  PEVSIIRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHIRKIQQGYDDDA 663

Query: 626  -----------VRSFDDFLREGLIEYLDVNEENNALIALYEGDATP-----------DT- 662
                       V  +   +  G+IEY+D  EE   +IA+   D              DT 
Sbjct: 664  MNDDSEEQEQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSLEQKEIDLNDTA 723

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 724  KRIKPEMSTSSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 783

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL  T+ +E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 784  NYNVRMDTMANILYYPQKPLAKTQAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 843

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + Y    +++  S  +   +P R    A  +++ H +      LD+D
Sbjct: 844  SSIDRGLFRSLFFRSYMDQEKRFGISIVEEFEKPTR----ATTLRLKHGT---YEKLDED 896

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDR 885
            GL APG  +  +D+ I K +P+      +   GQ  ++Y + R     P    E  +VD+
Sbjct: 897  GLIAPGVRVSGDDIIIGKTTPIPPDTEEL---GQR-TKYHTKRDA-STPLRSTENGIVDQ 951

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L +++ G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PFS  GI PDLI
Sbjct: 952  VLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLI 1011

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTV  +IE L  K G   G     + F +      TV+++S  L  +G+  
Sbjct: 1012 INPHAIPSRMTVAHLIECLLSKVGSIRGYEGDATPFTDL-----TVDAVSNLLRDNGYQS 1066

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+G
Sbjct: 1067 RGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDG 1126

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCK 1124
            GLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +CK
Sbjct: 1127 GLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCK 1186

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1187 NKTNIYQLHIPYAAKLLFQELMAMNIAPRL 1216


>gi|305663643|ref|YP_003859931.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
            17230]
 gi|304378212|gb|ADM28051.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
            17230]
          Length = 1150

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1166 (35%), Positives = 652/1166 (55%), Gaps = 71/1166 (6%)

Query: 21   LAAPVKSVV---DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS 77
            +A P+  ++   D++ ++  F+K +G+ + H+DS+N F+   + +I+     I + I P 
Sbjct: 21   VAHPISKILSPDDRWAIMEAFIKEKGITRHHIDSYNAFIEKILGEIIMEEPVIETSI-PG 79

Query: 78   IFLRFKDVRIGQPSMT-VDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
              +  K  R+G+P +  +DG ++  + P  CR  D+TY+ PI + +      +       
Sbjct: 80   FKVVIKGWRVGEPQVKEIDGSINRNITPMECRHRDITYSVPIYITLV----PYENDVPGN 135

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
              +V+IG IP+M++S +  L      EL ++GE P DPGGYFII GTE++++ QE L+ N
Sbjct: 136  PVEVLIGEIPLMVKSSKDPLSKMTSEELIKIGEDPKDPGGYFIIDGTERIIVAQEDLASN 195

Query: 196  RVIIDTDKKG-NINASVTSSTETVKSKTVIQMEK---GKMYLLLNQFVKKIPIMVVMKAM 251
            RVI+D  ++G NI  +    + T+  +  + M++   G +++       KIP +V+M+A+
Sbjct: 196  RVIVDYGQEGLNITHTAKVISSTIGYRVPVIMDRHKDGTLHVSFPAVPGKIPFVVLMRAL 255

Query: 252  GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            G+E D ++   V  DP     LLPS  + +  DI T E AL+Y+  ++     G     R
Sbjct: 256  GLERDFDIAIAVSFDPVIQNELLPSFVQAS--DIATVEDALDYIGSRI---AIGQARESR 310

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
              RA  +L   FL ++     +   K  ++  M  +++E +L    +DDKD+  NKR++L
Sbjct: 311  IERAKYVLDKYFLPHLGSKPEDRLRKALFLGQMACKLIEFVLGYRPVDDKDHYANKRIKL 370

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G++++LLF   FK  + +++  ++       +  R +++ +I  D IT  ++  ++TG 
Sbjct: 371  AGEMLALLFRVAFKAFLRDLRYQLE---RAKIKERRLNIALYIRSDVITERIKHAMATGT 427

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +        R G++Q+L R ++I ++ HM R      +S+     R L  +Q+G LCP +
Sbjct: 428  W-----IGGRTGVSQILDRTNWISSISHMRRTLSPLSRSQPHFEARDLHGTQFGRLCPFE 482

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL---------SGEELHNP 542
            TPEG  CGLVKNLALM  ++  E+E  +  + Y  G   + +L         S E++   
Sbjct: 483  TPEGPNCGLVKNLALMATISVGEDEHLVEKILYDKGTIPILVLFEKVRNGELSYEDIKTW 542

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV------FVNEKQRCVYIASD 596
            +   V  NG ++G H   K   + +R ++  G++   V +      ++NE    VY+ +D
Sbjct: 543  SK--VYLNGTLIGYHPNGKELVEKLRDMKHRGELSYEVGIAYYRTKYINE----VYVNTD 596

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
             GR+ RPL++ + G  +I +  + ++  G+ +F+D +++G IE LD  EE NAL+A+   
Sbjct: 597  SGRILRPLMVVENGKLKITKEVIDKVKKGMMTFEDLVKKGYIELLDPEEEENALVAINPE 656

Query: 657  DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
            D   +TTH+EI P  ++GV A  IPY  HNQSPRN YQ AM KQA+G    N + R D+ 
Sbjct: 657  DIGKETTHVEIWPPAMMGVAASTIPYAEHNQSPRNAYQSAMAKQALGFYMANFILRTDTR 716

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
             ++L YPQ PL+ TR + ++GY+   +GQN  VAVMSY+GY++EDA++MNKSS+DRG  R
Sbjct: 717  AHILHYPQIPLVQTRALSIIGYNDRPSGQNMVVAVMSYTGYNMEDALIMNKSSVDRGLAR 776

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
                + Y+    KYA    DRI  PD    G       +        LD+DG+A     +
Sbjct: 777  SNFFRLYSTEELKYAGGQEDRIEIPDPKVLG-------YRGKESYTKLDEDGIAKVEVQV 829

Query: 837  KPNDVYINKESP----LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            K  +  I K SP     E +G      G    R + +  T +   GE   VD V + S  
Sbjct: 830  KGGEALIGKTSPPRFVEEYKG-----YGILAQRRKDSSVTVR--HGEIGWVDAVFITSSL 882

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
             G   IK  +R  R PE+GDKF+SRHGQKGV G ++ Q D P++  GI PDLI+NPH  P
Sbjct: 883  EGHRLIKVRVRDLRIPEIGDKFASRHGQKGVIGALIPQYDMPYTPDGITPDLIINPHALP 942

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMT+G+++E + GK     G+   G+ F E     + ++ +   L+  G+  +G + +Y
Sbjct: 943  SRMTLGQLMESIAGKVAALRGKNVDGTPFFE-----ENIDELKRQLLMFGYPMDGTEPMY 997

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
             G TG  +   IF+G +YYQKL HMV DKMHAR  GP  +LTRQPTEGRAR GGLR GEM
Sbjct: 998  DGRTGELIGNPIFIGIVYYQKLHHMVSDKMHARSKGPVQLLTRQPTEGRAREGGLRFGEM 1057

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERD +I +GA+ L+ ER++ SSD   V VC +CG +G+YN K +   C    +   +  +
Sbjct: 1058 ERDAIIGHGAAALLRERMVESSDKTIVYVCELCGFIGWYNRKKEIYECPIHGDKGVLHPI 1117

Query: 1133 KLPYACKLLIQELQSMNIVPRLKLAE 1158
             +PYA KLL+QEL SM I PRL L +
Sbjct: 1118 VIPYAFKLLLQELMSMGIKPRLLLGD 1143


>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1166

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1175 (35%), Positives = 665/1175 (56%), Gaps = 81/1175 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKD-----V 85
            ++++  + + +GLV+Q LDSF++F+   ++KI++ +  I V G    +    ++     +
Sbjct: 14   WEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQYLSNEIEEPPKHTI 73

Query: 86   RIGQPSMTV------DGVSEKLNPHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKND 138
              GQ    +      DG  + + P+ CRL ++TY + +   I + V+  + E   +    
Sbjct: 74   SFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITHTVEQKNPETGEVTTTP 133

Query: 139  VVIGRIPIMLRSCRCVLYGKDE-AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             ++G++P+MLRS  C L   +   +   + ECPLDPGGYFII G+EKVL+ QE+++ N V
Sbjct: 134  ALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEKVLIAQEKMAGNTV 193

Query: 198  IIDTDKKGNINASVTSSTETVK------SKTVIQMEKGK-------------MYLLLNQF 238
             +  +KK + +  VT     V+      S  +++M +G              ++  L   
Sbjct: 194  YV-FEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKGRATFGRVIHASLPYI 252

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYL 295
             + IP++V+ +A+G E D+ +++ +     D     LL PS++E     + T+E AL+ L
Sbjct: 253  RQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDEA--FVVQTREVALD-L 309

Query: 296  EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
             G+   +  G   + R   A  IL+   L ++ V     + K F++  M+ R ++A L +
Sbjct: 310  IGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYMVHRTLQAALRR 369

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV-QKTVDIILSKPSRSSRFDLSQFI 414
              +DD+D+ GNKRL+L+G LV+ LF  LFK +  ++ +K  D++    +R+ +F +   +
Sbjct: 370  RELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLV----NRNHKFMVITLL 425

Query: 415  VRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473
              + +  GL  +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++   +++ K+
Sbjct: 426  DVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLNSPIDRTGKI 485

Query: 474  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL 533
            + PR L  + WG +CP +TPEG A GLVKNL+LM  +T   ++ P+  L    G++ L+ 
Sbjct: 486  AKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLGASGLDYLDR 545

Query: 534  LSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRK--LRRAGKIGEFVSVFVNEKQRCV 591
            L         +  V  NG  +G H  P      MR+  L  A  +   VS+F N ++R V
Sbjct: 546  LPSRSAIK-TATKVFVNGNWVGIHSHPDELVTTMRQYLLDAAHSVASEVSIFRNIREREV 604

Query: 592  YIASDGGRVCRPLVIADKGISR-----IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEE 646
            +I +D GR  RPL+I +K  +      +K  H+  L +   S+   ++ G++EY+DVNEE
Sbjct: 605  HIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRNDQMSWTHLVQRGVVEYIDVNEE 664

Query: 647  NNALIALYEGDATPDT-----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
               +IA+ +G     +     TH EI P  IL + A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 665  ETTMIAMDQGTLEETSYCNTYTHCEIHPSMILSICASIIPFPDHNQSPRNTYQSAMGKQA 724

Query: 702  MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
            MG    N   RMD+L ++L YPQRPL+ TR++  + + +L AG NA V +M+Y+GY+ ED
Sbjct: 725  MGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMNYLRFAELPAGINAIVGIMTYTGYNQED 784

Query: 762  AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLL 821
            +++MN+ S++RG  R +  + Y A      +S    I++ D+  P  E    +  +N   
Sbjct: 785  SVIMNRYSVERGLFRSVFYRSYAASE----HSERGEIIKIDK--PSRENCIGMRRANYDK 838

Query: 822  LILDDDGLAAPGEIIKPNDVYINK--ESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 879
            L  +DDG+ APG  +  +D  + +  E P  TR +       +  R+    ++      E
Sbjct: 839  L--EDDGIVAPGIRVSGDDAIVGRLLELPEATRQA-------SGGRFEKRDKSLFLRSSE 889

Query: 880  TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 939
            + ++D V +  ++ G+  +K  +R  R P++GDKF+SRHGQKG CG    QED PF+  G
Sbjct: 890  SGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGTCGMQYAQEDMPFAASG 949

Query: 940  ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLV 999
            + PD+I+NPH  PSRMT+G +IE L GK+    G     + F + +     V  +++ L 
Sbjct: 950  VVPDIIVNPHAIPSRMTIGHLIECLLGKSASHSGTIGDATPFTKVN-----VTDVADILE 1004

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
             + F   G +++Y+G TG  +QA +F+GP YYQ+LKHMV DK+HAR  GP   LTRQP E
Sbjct: 1005 GYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPME 1064

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI 1119
            GR+R+GGLR GEMERDC+IA+GA+  + ERL   SDP+ + VC VCGL      +     
Sbjct: 1065 GRSRDGGLRFGEMERDCMIAHGAAQFLRERLFEVSDPYSLHVCDVCGLPCVAKLEKNEFE 1124

Query: 1120 CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C+ C+N   +S ++LPYACKLL QEL +M++VPR+
Sbjct: 1125 CTRCRNSTRVSRIRLPYACKLLFQELMTMSVVPRM 1159


>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
          Length = 1232

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1229 (35%), Positives = 659/1229 (53%), Gaps = 133/1229 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ T I+++V  +  ++              +   
Sbjct: 22   DCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRRY 81

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN----------------- 120
             + F  + I +P  T  DG +  + P   RL ++TY++P+ V+                 
Sbjct: 82   EITFGKIYISKPMQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVFKSDDNRRKENE 141

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            +E+V+    ++   +K  V +G++PIMLRS  C+L    E E   L ECP D GGYF+I 
Sbjct: 142  LEWVEEKVEDEEPQQK--VFLGKVPIMLRSKFCMLRDLGEHEFFELKECPYDMGGYFVIN 199

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTE-------TVKSKTVIQMEK 228
            G+EKVL+ QE+ + N  I+   KK   +     A + S+ E       +++ K   + EK
Sbjct: 200  GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRDEK 257

Query: 229  GK----MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
            G     +   L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 258  GTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE-- 315

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 316  GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFESRKAFFL 372

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LF+ +  ++   +   +  
Sbjct: 373  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCVEN 432

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+
Sbjct: 433  ---DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 489

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LMT ++      P++
Sbjct: 490  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPIL 549

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR G I   V
Sbjct: 550  YFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHRDPANLVDTMRSLRRRGDISPEV 607

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLD--------- 624
            S+  + +++   I +D GRV RPL I D       KG  ++++ H+  LL          
Sbjct: 608  SIIRDIREKEFKIFTDAGRVYRPLFIVDDEAESETKGDLKLQKEHVHNLLSSEYDEYEDP 667

Query: 625  ----GVRSFDDFLREGLIEYLDVNEENNALIALYEGD---------ATPDT--------- 662
                   ++   + +G++EY+D  EE   +IA+   D          TPD          
Sbjct: 668  DNEGASYTWSSLINDGVVEYVDAEEEETIMIAMTPEDLEASKNAITETPDKSVLEEQELD 727

Query: 663  ----------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
                            TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG   
Sbjct: 728  PAKRIKPTFSAATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 787

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN
Sbjct: 788  TNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMN 847

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +      LDD
Sbjct: 848  QSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YEKLDD 900

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+V
Sbjct: 901  DGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRS--TESGIVDQV 957

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +GI PDLI+
Sbjct: 958  LLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLII 1017

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L  K     G     S F +      T E++S+ L +HG+   
Sbjct: 1018 NPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAVSKLLREHGYQSR 1072

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GG
Sbjct: 1073 GFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGG 1132

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKN 1125
            LR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +CKN
Sbjct: 1133 LRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMTVIANLKKNQFECRSCKN 1192

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              NI  + +PYA KLL QEL +MNI PR+
Sbjct: 1193 KTNIYQIHIPYAAKLLFQELMAMNISPRM 1221


>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Mycosphaerella populorum SO2202]
          Length = 1260

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1251 (34%), Positives = 664/1251 (53%), Gaps = 154/1251 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI----------- 78
            D + ++  F   +GLV Q LDSF+ F +T +++IV     IV  ID ++           
Sbjct: 28   DCWTVIHSFFSTKGLVSQQLDSFDEFASTTMQEIVDETPAIV--IDQNVASDGDDETNMP 85

Query: 79   ------FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--------EY 123
                   +    + I Q +MT  DG + +++PH  RL ++TY++P+ +N+        E 
Sbjct: 86   IVKRRYIIELGMLTISQAAMTEGDGSTRQMHPHEARLRNLTYSSPMFINMRKKMMLARER 145

Query: 124  VQGSH-----------------TEKTTME---------KNDVVIGRIPIMLRSCRCVLYG 157
              G H                 T +T  E         K+ V IG++PIML+S  C L  
Sbjct: 146  SIGGHLSEDGTHWIDPVGWDGYTTETVWEDDPDNPMEAKDQVFIGKLPIMLKSKICALRN 205

Query: 158  KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASV 211
            + E EL    ECP D GGYFII G+EKVL+ QE+ + N V +   K  N      + +++
Sbjct: 206  RSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGTNTPVVAELRSAI 265

Query: 212  TSSTETVKS-------KTVIQMEKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEVVQMV 263
               T  + S       ++      GK   +   ++K  IPI +V +A+G+ SD++++  +
Sbjct: 266  EKGTRLISSMGIRLYNQSAQSAVSGKTIRVTVPYLKVDIPIGIVFRALGIVSDEDILNHI 325

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   +L P +EE     I  ++ AL+Y+    +R       + R   A  +++ 
Sbjct: 326  VDKSDTQMLEMLKPCLEEA--FVIQDKDVALDYIG---RRGQQQGTKDKRIRYAKEVMQK 380

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++     +   K F++  M+ RM++  L +   DD+D+ G KRL+L+G L++ +F 
Sbjct: 381  EFLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTDEDDRDHFGKKRLDLAGPLMAQVFR 440

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKM 439
              F+ ++ E+++     L +   + R F+++  +  + IT GL   L+TGN+ D K+   
Sbjct: 441  LKFQQLVKEMKQ----YLHRCVETGREFNITLAVKTNIITSGLRYCLATGNWGDQKKASS 496

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACG
Sbjct: 497  SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 556

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNL+LM +VT      PLI      G++ LE    + + NP +  ++ NG  +G H  
Sbjct: 557  LVKNLSLMCYVTVGTPGTPLIDFMRQRGMDLLE--EYDPVMNPKATKIMLNGTWIGVHHN 614

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGIS 612
            P   A+V+R LRR   I   V++  + + R + + +D GRVCRPL + D       +G  
Sbjct: 615  PGHLAEVLRTLRRKDTISFEVTIIRDVRDREIRVFTDAGRVCRPLFVVDNDPKSSNRGHL 674

Query: 613  RIKEHHMKEL---------LDGVRS---------FDDFLREGLIEYLDVNEENNALIALY 654
             + + H+ +L         L+GV           +    REG++EYLD  EE  A+I++ 
Sbjct: 675  VLNQEHIGKLQQDQEILAGLEGVTEEERESSIYGWTGLTREGVVEYLDAEEEETAMISMT 734

Query: 655  EGD-------------------------ATPDT-----THIEIEPFTILGVIAGLIPYPH 684
              D                           P+      TH EI P  ILG+ A +IP+P 
Sbjct: 735  PEDLEEHRNMRQGIQWDDARDDPHRRIKPAPNASVRTWTHCEIHPAMILGICASIIPFPD 794

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + +  L AG
Sbjct: 795  HNQSPRNTYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLRFRDLPAG 854

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA+ +YSGY+ ED+++MN+SS+DRG  R +  + Y    ++   S  +   +P R+
Sbjct: 855  QNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQEKRVGMSVVEAFEKPTRS 914

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 RM+   +  L     DDDG+ APG  +  +D+ I K +P+      +   GQ   
Sbjct: 915  D--TMRMKQGSYDKL-----DDDGIVAPGARVSGDDIIIGKTAPMPPDAEEL---GQRTK 964

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
             +     +      E  ++D+V L ++  G   +K   R T+ P++GDKF+SRHGQKG  
Sbjct: 965  LHVKRDVSTPLRSTENGLIDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTI 1024

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PFS  G+ PD+I+NPH  PSRMT+  +IE L  K G   G+    + F + 
Sbjct: 1025 GITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTDV 1084

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TV S+S+ L   GF   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HA
Sbjct: 1085 -----TVTSVSQILAAAGFQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHA 1139

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL+  SD F V +C +
Sbjct: 1140 RARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEI 1199

Query: 1105 CGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CGL+    + K +   C  CKN   I+ + +PYA KLL QEL +MN+  R+
Sbjct: 1200 CGLMTPIASIKKQQFECRPCKNKTKIAQVIIPYAAKLLFQELAAMNVATRM 1250


>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
            [Piriformospora indica DSM 11827]
          Length = 1223

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1214 (36%), Positives = 657/1214 (54%), Gaps = 123/1214 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---------RANDRIVSGIDPSIF- 79
            D + ++  F + RGLV+Q LDSFN F+N  I+ IV         +      +  D S   
Sbjct: 33   DCWTVIAAFFEKRGLVRQQLDSFNEFINNTIQDIVEDSGDLNLEQHEQHTGAETDKSTRH 92

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK- 136
             ++F  V + +PS+T  DG    L P   RL ++TY+A ++V I  V+    +    E  
Sbjct: 93   KIKFGQVYLTRPSVTEKDGQVSPLFPQEARLRNLTYSATLMVEI--VEEKQEQVPNDEGG 150

Query: 137  -------------NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTE 183
                         N + + +IPIMLRS  C LY   + E   L ECP DPGGYFII G E
Sbjct: 151  WDWERIPGSIPGFNRLPLAKIPIMLRSDICALYTIPDPEKYDLNECPDDPGGYFIISGQE 210

Query: 184  KVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTS---------STETVK--SKTVIQME 227
            KVL+ QE+++ N V +    KG  +     A + S         S+  VK   K + +  
Sbjct: 211  KVLIAQERMAGNHVYVFA--KGQPSPISFLAEIRSVPERGGKLLSSFQVKLFHKGIEKQS 268

Query: 228  KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLD 284
             G +   +      +PI ++ +AMG+ +D+++++ +   G D +   +L P I+E     
Sbjct: 269  GGAIRASVPYIKTDVPIWILFRAMGVLADRDILEHICYDGHDDQMLEMLKPCIDE--GFV 326

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYV 341
            +  +E AL+++  +       +P   RE R   A  I++   L ++ +   N   K ++V
Sbjct: 327  VQHREIALDFIGRR-----GNTPTISRERRIRYAQEIIQKELLPHISMEEGNEARKAYFV 381

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++ A L++  +DD+D+ G KRL+L+G L+S LF  LF+ ++ +V +     L K
Sbjct: 382  GYMIHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSTLFRMLFRKVVKDVYR----YLQK 437

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRK-GMTQVLARLSFIGTLGH 459
               S + FD+ + I   +I+ GL+ +L+TGN+  ++  M  K G++QVL R ++  TL H
Sbjct: 438  CVESGKAFDVGRAIKLGTISNGLKYSLATGNWGDQQNAMSSKAGVSQVLNRYTYASTLSH 497

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  ++      P+
Sbjct: 498  LRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSYSAPV 557

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
                   G+E LE  +  +  +   FL   NG+ +G HR P    + ++ LRR   I   
Sbjct: 558  GEFLDEWGMEALEENAQSDRPSTKVFL---NGVWMGVHREPTQLLNTLKHLRRTEAIHPE 614

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD------GVRSFDDFL 633
            VSV  + +++ + I +D GRVCRPL + +K    I    +  L D      G R +D+  
Sbjct: 615  VSVVRDIREKELRIYTDSGRVCRPLFVVEKDKLLITPEQVARLRDEKDDPAGYR-WDNLF 673

Query: 634  REGLIEYLDVNEENNALIALYEGD----------ATPDT----------------THIEI 667
            ++G++E LD  EE   +I +   D           T D                 +H EI
Sbjct: 674  KDGVVELLDAEEEETVMICMSPEDLDARSSGQVYHTEDMYDPSSRVKTIIKAGSYSHCEI 733

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILGV A ++P+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL
Sbjct: 734  HPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGISLSNFLVRMDTMANILYYPQKPL 793

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR +E + +  L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + 
Sbjct: 794  ATTRALEWLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDME 853

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +     T +   +P R      RM+   H N     LDDDGL APG  +   D+ I K +
Sbjct: 854  KTAGQITLEEFEKPSRD--TTLRMK---HGNYDK--LDDDGLIAPGMNVIGEDIIIGKTA 906

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            PL      +   GQ   R+     +      E+ ++D V +  D  G   +K  +R TR 
Sbjct: 907  PLPPDSQEL---GQRTDRHTRRDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRSTRI 963

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G + +QED PFS  GI PDLI+NPH  PSRMT+G ++E L  K
Sbjct: 964  PQVGDKFASRHGQKGTIGILYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHLVECLLSK 1023

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G+    + F +      TVE +S  L   G+   G +++Y G TG  LQA +++G
Sbjct: 1024 VATLNGQEGDATPFTDL-----TVEQVSHALRAAGYQSRGLEVMYHGHTGKKLQAQVYLG 1078

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME-------RDCLIAY 1080
            P YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEME       RDC+I++
Sbjct: 1079 PTYYQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMEASQNSLIRDCMISH 1138

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            G +  + ERL  +SD + + VC +CGL    N K ++  C +CKN   +S + +PYA KL
Sbjct: 1139 GIAAFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRSCKNKTAVSQLYIPYAAKL 1198

Query: 1141 LIQELQSMNIVPRL 1154
            LIQELQ+MNI  RL
Sbjct: 1199 LIQELQAMNIAARL 1212


>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
            mediterranea MF3/22]
          Length = 1274

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1247 (34%), Positives = 650/1247 (52%), Gaps = 149/1247 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F   +GLV+Q LDSF+ FV   I++I+  N  ++       SG +     R 
Sbjct: 45   DCWNIISAFFNEKGLVRQQLDSFDEFVKNTIQEIIEENADLILDQQDQHSGSEKDAARRY 104

Query: 82   ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
               F  + +  PS +  DG ++ + P  CR+ ++TYAAP+   +                
Sbjct: 105  HIHFSQIIVSNPSFSEADGSTQAIFPQDCRIRNLTYAAPVYCEMTKQTLIGHEDPDSMTG 164

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            E +         +E    +IGRIP+MLRS  C L   +E +L R+ ECP D GGYFII G
Sbjct: 165  EMIWEPEHGGEALEHVKPMIGRIPMMLRSYFCNLRKFNERDLYRVNECPYDSGGYFIING 224

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGK---- 230
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    +G+    
Sbjct: 225  SEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEQGGKTISQFQVKMYHRGQERAS 284

Query: 231  ---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLD 284
               M   +      IPI VV +A+G+ SD+++++ +  D   S++L    P I++     
Sbjct: 285  GSVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICFDMNDSSMLEMLKPCIDD--GFV 342

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAV 343
            I  +E AL+++     R T      D+  R A  IL+   L ++ +   +   K ++   
Sbjct: 343  IQDREVALDFIGN---RGTATGLNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYFFGY 399

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +    
Sbjct: 400  MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVET-- 457

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
                F+++  I   ++T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 458  -HKEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRR 516

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM  ++     GP+I  
Sbjct: 517  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAVISVGSVSGPVIDF 576

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                G+E LE    E   + N   V  NG+ LG  R P    + +R LRR       VS+
Sbjct: 577  LEEWGLETLE----ENTQSTNLTKVFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSI 632

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR--------------- 627
              + ++R + I SD GRV RPL I +    ++K  H++ L +  R               
Sbjct: 633  VRDIREREIRIYSDAGRVLRPLFIVEDHKLKLKRQHLRWLQEKWRIEERPYVPREERNKE 692

Query: 628  -------------------------------SFDDFLREGLIEYLDVNEENNALIALY-- 654
                                           ++   +R+G+IE LD  EE   +I +   
Sbjct: 693  EVSEGETVADEEEGRPIMRDERRVKRKKKPFTWSSLIRDGVIELLDAEEEETVMICMTPD 752

Query: 655  ----------------EGDATPDT-----------THIEIEPFTILGVIAGLIPYPHHNQ 687
                            E D  P             TH EI P  ILG+ A +IP+P HNQ
Sbjct: 753  DLLESRLLRRGLDPRAEADFNPAARLKPLPIAHTWTHCEIHPSMILGICASIIPFPDHNQ 812

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N L R D++  +L YPQ+PL TTR +E + + +L AGQNA
Sbjct: 813  SPRNTYQSAMGKQAMGIYLTNFLMRQDTMANILYYPQKPLATTRAMEYLKFRELPAGQNA 872

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y    ++      D   +P R    
Sbjct: 873  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYMDQEKRSGAIIVDEFEKPTRDT-- 930

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
              RM+   +  L     +DDGL APG  ++ +D+ I K +P+      +   GQ    + 
Sbjct: 931  TLRMKHGTYDKL-----EDDGLIAPGVNVRGDDIIIGKTAPIPPDSEEL---GQRTRGHT 982

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
                +      E  +VD+V + ++  G   +K  +R TR P++GDKF+SRHGQKG  G  
Sbjct: 983  KRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIT 1042

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
             +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F +    
Sbjct: 1043 YRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNEGDATPFTDL--- 1099

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
              TV+S+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK+HAR  
Sbjct: 1100 --TVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHARAR 1157

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + ERL  +SD + + VC +CGL
Sbjct: 1158 GPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERLFDASDAYRLHVCDLCGL 1217

Query: 1108 LGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                N K ++  C  CKN  +IS + +PYA KLL QELQ+MNI  RL
Sbjct: 1218 TAIANLKKQSFECRACKNKTSISQLYIPYAAKLLFQELQAMNIAARL 1264


>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1184

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1193 (35%), Positives = 660/1193 (55%), Gaps = 88/1193 (7%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------- 77
            S  D + ++    + +GLVKQ LDSFN F+    + IV     IV    P          
Sbjct: 16   SADDIWDVISAHFREKGLVKQQLDSFNEFIGNACQTIVDETPDIVLRPQPQHVPGKRAPP 75

Query: 78   ----IFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
                  + F  +  G+P+ T VDG    L PH  RL +++Y++P+ V +  +       T
Sbjct: 76   EGTRTIISFGQLSAGKPTFTEVDGTPTVLFPHEARLRNLSYSSPLYVEVTRIDIEIDPAT 135

Query: 133  TMEKN------DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
              E+       ++ +GR+P+ML S  C L G  E +L  +GECP D GGYFII G+EK L
Sbjct: 136  KEEREFRHPARNLYLGRVPMMLHSDFCHLNGLTEYQLQNIGECPYDQGGYFIINGSEKAL 195

Query: 187  LIQEQLSKNRVII----------------DTDKKGNINASVTSSTETVKSKTVIQMEKGK 230
            + QE++  N V +                    +GN  A    +T+   ++  ++ + G+
Sbjct: 196  IAQERMGNNAVYVFKRASTAPYSHVAECRSVLDRGNKPAR---TTQVKITRGGVKGQSGQ 252

Query: 231  MYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIY 286
              ++   +++  IP+ VV +A+G+ESD+E+++ V     D     LL+PS++  +   I 
Sbjct: 253  CIMVSLPYIRADIPLAVVFRALGLESDREIMERVIYDTDDEEMQTLLMPSLDMGSV--IT 310

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP-KCFYVAVML 345
             Q  AL+++ GK + ++ G+  + R   A  +L+  FL ++ +    + P K +++  M 
Sbjct: 311  DQNLALDFI-GK-RGNSVGATRDRRIRYAREVLQLEFLPHIGI--GAYEPAKAWFLGYMT 366

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             +++  +L +   DD+D+ G KRL+L+G L++ LF  LF+ ++ + +    I+  +    
Sbjct: 367  HQLLATVLGRREEDDRDHYGLKRLDLAGPLLTGLFRQLFQKVVKDARS---ILQHQLDMG 423

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
               +++  +   +IT  L+  ++TGN+   R    R G++QVL RL++  +L H+ R++ 
Sbjct: 424  KELNIALAVKGRTITDNLKYAIATGNWRADRKAAVRTGVSQVLNRLTYAASLSHLRRLNS 483

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +  K++ PR L  +QWGM+CP +TPEG++CGLVKNLALM +++       ++ + Y 
Sbjct: 484  PIGREGKLAKPRQLHNTQWGMICPAETPEGQSCGLVKNLALMAYISVGTPVADILEMLYN 543

Query: 526  LGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVN 585
              +E L  ++ E +       V  NG  +G H RP+     +R LRR+G+I + VS+  +
Sbjct: 544  FEMEPLYEVTAERIKRQTK--VFLNGSWVGIHPRPEELVTALRVLRRSGEIADEVSIVFD 601

Query: 586  EKQRCVYIASDGGRVCRPLVIADK--GISRIKEHHMKELLD---GVRSFDDFLREGLIEY 640
                 + I +D GRVCRPL I D    + RI++ H+  L D      +F   +REGL+EY
Sbjct: 602  VSHGELRIGTDAGRVCRPLFIVDTETNLLRIRKQHIDLLRDYETTGYTFSRLVREGLVEY 661

Query: 641  LDVNEENNALIALYE------GDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
            LDVNEE   +IA+ +      GD     TH+EI P  I GV A +IP+P HNQSPRNTYQ
Sbjct: 662  LDVNEEETVMIAMDQEHLATSGDHA-TYTHMEIHPSMIFGVCASIIPFPDHNQSPRNTYQ 720

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQAMG    N   RMD++ ++L YPQ+PL+TTR +E + +  L AG NA VA+  Y
Sbjct: 721  SAMGKQAMGMYLTNYNLRMDTMAHVLYYPQKPLVTTRVMEHLQFRTLPAGINAVVAIACY 780

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER-MQV 813
            SGY+ ED+++M+++++DRG  R +  K +    QK      + I +PD   P     M+ 
Sbjct: 781  SGYNQEDSLIMSQAAVDRGLFRSVYYKTFKEEEQKKLFGQQETISKPD---PAVTLGMKE 837

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQT 872
             H  + L    + DGL   GE ++  DV + K +PL  +R ++ +   +T S   +    
Sbjct: 838  AHAYSKL----ESDGLIGVGERVRGGDVLVGKTAPLGASRAAVDAAEQETASGMAALSGM 893

Query: 873  YKGPD-------GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
                D        E  V D+V +C+ + G   +K  +R    P++GDKF+SRHGQKG  G
Sbjct: 894  RTRKDCSLVMKRTERGVTDKVLICTGEAGTRMVKVRVRTELIPQVGDKFASRHGQKGTMG 953

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
              + +ED PF+  GI PD+IMNPH  PSRMT+  +IE L GK     G     +AF    
Sbjct: 954  LCMPEEDLPFNVDGIRPDIIMNPHAVPSRMTIAHLIEALLGKVCALSGVEGDATAFTPV- 1012

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                TV++I   LV+HG+   G +++++G TG P+ A IFMG  YYQ+L+H+V  K+ AR
Sbjct: 1013 ----TVDAIGRELVRHGYDPRGWELLFNGQTGRPMNAAIFMGVNYYQRLRHVVYQKLGAR 1068

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              G   +LTRQP EG++R GGLR+GEME+D  +AYGAS ++ ER+   SD + V VC  C
Sbjct: 1069 ARGAVQVLTRQPVEGKSRGGGLRIGEMEKDVFVAYGASAVLKERMCDVSDKYRVHVCERC 1128

Query: 1106 GLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            GL+   + +     C  CKN   I+++++PYACKLL QEL SM I PR+ L +
Sbjct: 1129 GLIAIADLRRSIFECRGCKNKTRIAAVEIPYACKLLFQELMSMAIAPRMVLTD 1181


>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1240

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1215 (35%), Positives = 654/1215 (53%), Gaps = 120/1215 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---------RANDRIVSGIDPS--I 78
            D + ++  F + +GLV+  LDSFN F++  I+++V         +++       D +   
Sbjct: 55   DCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDKTRRY 114

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE------- 130
             + F  + + +P+MT  DG S +L P   R  ++TY+A + V++       +E       
Sbjct: 115  EIEFGQIYLNKPTMTESDGSSAQLFPQEARYRNLTYSASLFVDVTQKVLVQSEDELDLNG 174

Query: 131  ---------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
                     KT +++  + IG++PIML+S  C L G D+     L ECP D GGYF+I G
Sbjct: 175  DAAWVPEHGKTDVDEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYFVING 234

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGK---- 230
            +EKVL+ QE+++ N V + +            I ++V    +T+ +  V    + K    
Sbjct: 235  SEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEKTA 294

Query: 231  ---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECANLD 284
               +   L      IPI++V +A+G+  D+EV+Q +  D   +    +L P IEE     
Sbjct: 295  NNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEA--FV 352

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  ++ AL+++ G+ + +T G     R   A  IL+   L +V     +   K ++   M
Sbjct: 353  IQDRDVALDFI-GR-RGTTTGLSRAKRTVYAQEILQKEMLPHVSTSEGSNTKKAYFFGYM 410

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L++  +DD+D+ G KR++L G L++ LF  LF+ +  +V + +   + +   
Sbjct: 411  IHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEE--- 467

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F +   +   +IT GL  +L+TGN+ D K+    + G++QVL R +F  TL H+ R 
Sbjct: 468  HREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRT 527

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  VT      P++   
Sbjct: 528  NTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFL 587

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
               G   L+ L   ++ +  +  V  NG+ +G H  P    D +R LRR   I   VSV 
Sbjct: 588  EEFG---LDSLVDMQVAHAKATKVFVNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVV 644

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKG--ISRIKEHHMKELLDGVRS------FDDFLRE 635
             + ++R + I +D  RV RP+ I +       IK+HH++ +   V +      +   ++E
Sbjct: 645  RDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKHHVEMIGQPVPATGEEFRWTQLVQE 704

Query: 636  GLIEYLDVNEENNALIALYEGD------------------------------ATPDT-TH 664
            G+IEYLD  EE + LI +   D                                PDT TH
Sbjct: 705  GVIEYLDAEEEESVLICMTTTDLELSREYKQRNGNINLTSADPTARLKAVHTIAPDTWTH 764

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P   LG+ A ++P+P HNQSPRN YQ AMGKQA+G    N L R DS+ ++L YPQ
Sbjct: 765  CEIHPAMTLGICASIVPFPDHNQSPRNVYQSAMGKQAIGVPISNILSRADSMAHVLYYPQ 824

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TTR++E + + +L AGQN+ VA+M YSGY+ ED+++MN+SS+DRGF R +  + Y 
Sbjct: 825  KPLGTTRSMEHIRFRELPAGQNSIVAIMCYSGYNQEDSVIMNQSSIDRGFMRSLYYRGYM 884

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            A  +K      +   +P R      RM+   +  +     D DGL APG  +  +DV I 
Sbjct: 885  AEEKKVGVMQLEEFEKPHRDT--TIRMKHGTYDKI-----DADGLVAPGTRVSGDDVIIG 937

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPD-----GETCVVDRVALCSDKNGDLCIK 899
            K +PL        P    +   RS   T K         E  ++D+V L ++ NG+  +K
Sbjct: 938  KTAPL--------PPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSNGNKFVK 989

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
              +R++R P+ GDKF+SRHGQKG  G + +QED PFS  GI PD+I+NPH  PSRMT+G 
Sbjct: 990  VRVRNSRVPQTGDKFASRHGQKGTVGIMYRQEDMPFSAEGITPDIIINPHAIPSRMTIGH 1049

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            ++E L  K     G+    + F E      TVE++S  L   G+   G +++Y G TG  
Sbjct: 1050 LVECLLSKVAALSGQEGDATPFTEL-----TVEAVSSILRGLGYQSRGLEVMYHGHTGRK 1104

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            +QA +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R GGLR GEMERDC+IA
Sbjct: 1105 MQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIA 1164

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACK 1139
            +G +  + ER+   SDP+ + VC +CGL    N K     C +C+N   IS + +PYA K
Sbjct: 1165 HGIAGFLKERMFDVSDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAK 1224

Query: 1140 LLIQELQSMNIVPRL 1154
            LL+QELQS+N+  RL
Sbjct: 1225 LLMQELQSVNVALRL 1239


>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1196

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1206 (36%), Positives = 657/1206 (54%), Gaps = 114/1206 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGIDPSIF-- 79
            D + ++  + + +GLV+Q LDSF+ F+   ++++V  +  I        + G D + F  
Sbjct: 12   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVGYDEANFDE 71

Query: 80   -----------LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYV 124
                       ++F  V + +P+ +  DG    + PH  RL ++TYAAP+ V++   EY 
Sbjct: 72   TMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYR 131

Query: 125  QGSHTEK-----------TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDP 173
             G+               +T E     +G +PIMLRS  CVL  KD+A+LA LGEC  D 
Sbjct: 132  VGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQ 191

Query: 174  GGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKT------VIQME 227
            GGYF+I G+EKV++ QE++S N V     K+ +  + V  +   V++ T       IQM 
Sbjct: 192  GGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMY 251

Query: 228  K--GKMYLLLNQ------FVKK-IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            +  GK  +  NQ      +++  IP++++ +A+G  +D+++++ V     D     L  P
Sbjct: 252  QKGGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRP 311

Query: 276  SIEECANLDIYTQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNN 333
            S+EE     I  QE AL+++   G  +  T     +DR   A  IL+   L +V    + 
Sbjct: 312  SLEEA--FVIQKQEVALDFIGRRGSARDVT----KDDRIRYAAGILQKEVLPHVGTEEHC 365

Query: 334  FRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK 393
               K F++   + +++   L +   DD+D+ G KRL+L+G L+  LF  LF+ +  +V+K
Sbjct: 366  ETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRK 425

Query: 394  TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSF 453
             +   L +      F++   I  + I+ GL+ +L+TGN+  K     + G++QVL RL++
Sbjct: 426  HLQRCLDE---GKHFNIGAAIKSNHISDGLKYSLATGNWGDKG-NTSKAGVSQVLNRLTY 481

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              +L H+ R +    ++ K + PR L  S WGM+CP +TPEG+A GLVKN+ALM ++TT 
Sbjct: 482  ASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITTG 541

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
              + P++        E+L  +    +  PN+  +  NG  +G HR PK      R LRR 
Sbjct: 542  TSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRRM 601

Query: 574  GKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR------ 627
              I   VS+  +  +  V I +D GR+CRPL I       IK+HH+ +L  GV       
Sbjct: 602  IDIDAEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAIKKHHISQL-QGVSPDQKKL 660

Query: 628  SFDDFLREGLIEYLDVNEENNALIALYEGD--------ATPDTTHIEIEPFTILGVIAGL 679
            ++ D L EGL+EY+D  EE   +IA+   D         +   TH EI P  ILG+ A +
Sbjct: 661  TWTDLLMEGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASI 720

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG  A N   RMD++ ++L YPQ+PL TTR +E + + 
Sbjct: 721  IPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFR 780

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS------ 793
            +L +G N  VA+M Y+GY+ ED+++MN+S++DRG  R    + Y   +Q+ ++S      
Sbjct: 781  ELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYN--DQEKSSSVGSVGA 838

Query: 794  -TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
              S+   RP       + M+   +  L     DDDGL +PG  +  +DV I K +P    
Sbjct: 839  LNSEFFERP--AFDNCKGMKTGDYGKL-----DDDGLVSPGTRVSGDDVLIGKTAP---- 887

Query: 853  GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
               M     T SRY     +      E  +VD V + + K G    K  IR+ R P++GD
Sbjct: 888  ---MDAIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKVRIRNVRIPQVGD 944

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+ ++IE + GK  V  
Sbjct: 945  KFASRHGQKGTIGMTYRQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQLIECILGKVAV-- 1002

Query: 973  GRFHYGSAFGEPSGHADT-VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
                +    G+ +   D  V+ IS+ L   G+  +G + +Y G TG PL A +F+GP +Y
Sbjct: 1003 ----FQGCEGDATPFTDVHVDDISKRLHAMGYQRHGNEAMYQGHTGRPLNARVFIGPTFY 1058

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+LKH+V DK+H+R  GP  MLTRQP EGRAR+GGLR+GEMERDCLI +G +  I +R  
Sbjct: 1059 QRLKHLVDDKVHSRARGPVAMLTRQPLEGRARDGGLRMGEMERDCLITHGCANFIRDRFF 1118

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICS--TCKN-GDNISSMKLPYACKLLIQELQSM 1148
             +SD + + +C  CGL    N K     C   TC      I  +++PYACKLL QELQSM
Sbjct: 1119 CNSDQYRIHICERCGLTAQSNLKKMTYECRTPTCVGLPYKICQVEIPYACKLLFQELQSM 1178

Query: 1149 NIVPRL 1154
             I PR+
Sbjct: 1179 CISPRI 1184


>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1240

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1254 (35%), Positives = 666/1254 (53%), Gaps = 139/1254 (11%)

Query: 12   DEQLPDKQKLAAPVKSVV--DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDR 69
            DE + D       ++++   D + ++  F + +GLV Q LDSF+ FV T I+++V  +  
Sbjct: 4    DESMVDPYGYDEEIETITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSH 63

Query: 70   IV-----------SGIDPSIFLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPI 117
            ++              +    + F  + I + S T  DG +  + P   RL ++TY++P+
Sbjct: 64   LILDQPAQHTSVADHKNKRYEIEFGKIYISKTSQTEGDGTTHSVFPQEARLRNLTYSSPL 123

Query: 118  LVNI---------EYVQGSHTEKTTMEKND-------VVIGRIPIMLRSCRCVLYGKDEA 161
             V++            + +  E   +E +D       V +G++PIMLRS  C+L G  E 
Sbjct: 124  YVDMTKRKFESDDNKRKDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKFCMLNGLAEH 183

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTE 216
            E   L ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK   +     A + S+ E
Sbjct: 184  EFYELKECPYDMGGYFVINGSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE 241

Query: 217  -------TVKSKTVIQMEKG----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV-- 263
                   +++ K   + EKG     +   L    + IPI++V +A+G+  D ++++ +  
Sbjct: 242  KGSRLISSMQIKLYGRDEKGVAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICY 301

Query: 264  -GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
               D +   +L P +EE     I  +E AL+++    +R   G     R   A  IL+  
Sbjct: 302  DANDWQMLEMLKPCVEE--GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKE 356

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L N+         K F++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  
Sbjct: 357  LLPNITQEEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRI 416

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-R 441
            LFK +  ++   +   +      S F+L+  +   +IT GL  +L+TGN+  +R  M  R
Sbjct: 417  LFKKLTKDIYNYMQRCVEN---DSDFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSR 473

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLV
Sbjct: 474  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 533

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNL+LMT ++      P++      G+E LE       + P+S  +  NG+ +G HR P 
Sbjct: 534  KNLSLMTCISVGSSSEPILGFLRDFGLEVLEDYVPS--NAPDSTRIFVNGVWVGVHRDPA 591

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRI 614
               D +R LRR+G I   VS+  + +++   I +D GRV RPL I D       KG   I
Sbjct: 592  QLVDYVRDLRRSGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMI 651

Query: 615  KEHHMKELLDGVR-----------------SFDDFLREGLIEYLDVNEENNALIALYEGD 657
             + H+++L+                     ++   + EG++EY+D  EE   +IA+   D
Sbjct: 652  TKEHIRKLVAEDMDDDELEEDEEGGESRKYTWSSLVSEGIVEYVDAEEEETIMIAMSPDD 711

Query: 658  A-----------------------------------TPDTTHIEIEPFTILGVIAGLIPY 682
                                                T   TH EI P  ILGV A +IP+
Sbjct: 712  VKASKSTMSESEQQELQLQEQELDPAKRIKPTTSSNTHTYTHCEIHPSMILGVAASIIPF 771

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L 
Sbjct: 772  PDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELP 831

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y  + ++      +   +P 
Sbjct: 832  AGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPS 891

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      LD+DGL APG  +   D+ I K +P+      +   GQ 
Sbjct: 892  RS----DTLRLKHGT---YEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADTEEL---GQR 941

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
               +     +      E+ +VD+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG
Sbjct: 942  TLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKG 1001

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
              G   + ED PFS  GI PDLI+NPH  PSRMTV  +IE L  K     G F      G
Sbjct: 1002 TIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSG-FE-----G 1055

Query: 983  EPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            + S   D T E+I++ L +HG+   G +++Y+G TG  L A +F GP YYQ+L+HMV DK
Sbjct: 1056 DASPFTDVTAEAIAKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDK 1115

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V V
Sbjct: 1116 IHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHV 1175

Query: 1102 CRVCGLLGYY-NHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+    N K     C +CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1176 CGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1229


>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
            [Trachipleistophora hominis]
          Length = 1381

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1204 (36%), Positives = 648/1204 (53%), Gaps = 123/1204 (10%)

Query: 43   GLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFKDVRIGQPSMTV 94
            GLV+Q LDSFN F+ T +++I+  N+ ++    PS        I L+F  + I +P +  
Sbjct: 211  GLVRQQLDSFNEFIETTMQEIIDENNTLIVQSIPSAGKESVQKIILKFGQIYISKPPVIT 270

Query: 95   --DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCR 152
              DG +  L P   RL D+TYA P+ V++      + E        V IG +P+MLRS  
Sbjct: 271  EQDGKTSTLFPCEARLRDLTYACPLYVDVTKSVVENEESDDHFYRQVPIGLVPVMLRSSC 330

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV------IIDTDKKGN 206
            C+L+G  +  L  LGECP D GGYF+I G+EKVL+ QE+++ N V      +        
Sbjct: 331  CILHGLSDKNLTELGECPYDQGGYFVINGSEKVLIAQERMATNVVHVFEKSLATYTHYAE 390

Query: 207  INASVTSSTETVKSKTVIQMEKGKMYLLLNQFV----KKIPIMVVMKAMGMESDQEVVQM 262
            I ++    ++T  +  V  ++K +   LL   +    + IP++V+ +A+G  SD+E+++ 
Sbjct: 391  IRSAPQKGSKTPSALIVKLVKKTETEFLLRATLPGVRQDIPVIVIYRALGFVSDKEIMEH 450

Query: 263  VGRDPRYSALLL---PSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSIL 319
            +  DP    +L    PSIEE     I  Q  AL+Y+ GK + +  GSP   R   A  IL
Sbjct: 451  LIYDPNDKEMLQVIRPSIEEA--FVIQDQNVALDYI-GK-RSAPAGSPREKRIQFAKDIL 506

Query: 320  RDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLL 379
               FL ++         K F+   M++R++   + + + DD+D+ G KR++L+G L++ L
Sbjct: 507  IREFLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKRVSPDDRDHYGKKRMDLAGPLLAQL 566

Query: 380  FEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKM 439
            F+ LF+ +  E  K +   +        F+++  +    IT G   +L+TGN+  +   M
Sbjct: 567  FKVLFRKLCQETIKHMQKCIEN---KRDFNIALGLKTSIITQGFRYSLATGNWGEQSRAM 623

Query: 440  HRK-GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
              K G+ QVL R +FI TL H+ RV+    +  K++ PR L  + WGM+CP +TPEG+AC
Sbjct: 624  QTKAGVAQVLNRYNFISTLSHLRRVNSPMGREGKLAKPRQLHNTHWGMVCPAETPEGQAC 683

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNL+L+ +++ +     ++ L    G++ LE ++  E++      V  NG  LG   
Sbjct: 684  GLVKNLSLLAYISVNHPIEGIVELLEEFGLKSLEEVAPSEVYKATKVFV--NGTWLGITT 741

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
              +    V+++++R  +I + VS+  + + + + I  D GR CRP  + +         H
Sbjct: 742  EREFLYTVLKRMKRQARIHKDVSIVQSLRDKEIRILCDVGRPCRPCFVVENNRILFTAEH 801

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIA-----LYEG----------------- 656
               L +G   ++D +  G++EYLDV EE+ A+I      LYE                  
Sbjct: 802  ANMLREGKMIWEDLVNNGIVEYLDVEEEDQAMICMSPEELYEQQMVTDRINAELRGESVE 861

Query: 657  ------------------------DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
                                    D   + TH EI P  ILG+ A +IP+P HNQSPRNT
Sbjct: 862  RPRERVLKHTSKHVGSVYPGNDPHDLITNYTHCEIHPSMILGICASMIPFPDHNQSPRNT 921

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AM KQAMG  A N L RMDSL  +L YPQ+PL+TTR +E + + +L AGQNA VA+ 
Sbjct: 922  YQSAMSKQAMGVYATNFLLRMDSLSNILFYPQKPLVTTRAMEYLRFRELPAGQNAIVAIA 981

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA---- 808
             Y+GY+ ED+++MN+S++DRG  R  + + YT  +Q+  N            GPG     
Sbjct: 982  CYTGYNQEDSVIMNQSAIDRGLFRSFLYRTYT--DQETMN------------GPGCVEVF 1027

Query: 809  ---ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI--MSPTGQTD 863
                R +V+   NL    LD+DG+  PG  +   DV I K  P+  R  +   S     D
Sbjct: 1028 AKPRRGEVLRMKNLNYDKLDEDGIVNPGVRVTGEDVLIGKILPVIERMDVNGNSLIDNRD 1087

Query: 864  SRYRSARQTYK--GPDGETC-------VVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
             +  +   T      D  T        VVD V + +++ G    K  IR  R PE+GDKF
Sbjct: 1088 EKINTESNTMNVSWKDASTAMRPTEEGVVDSV-IVTNREGYKFTKVKIRSCRVPEMGDKF 1146

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKG  G  ++ ED PF+  GI PD+I+NPH  PSRMT+G +IE L GK     G 
Sbjct: 1147 ASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIPSRMTIGHLIECLLGKVSALAGE 1206

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
               G+ F +      TV +ISE L   G+ + G + +Y+G+TG  L A IF+GP YYQ+L
Sbjct: 1207 EGDGTPFSDV-----TVGAISEQLKDFGYEHRGLETMYNGMTGRKLDAQIFIGPTYYQRL 1261

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G S+ + ERL   S
Sbjct: 1262 KHMVQDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHGTSLFLRERLFEVS 1321

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F + VC  CGL       L+ G C  C N   ++ +++PYA KLL+QEL  MNI PRL
Sbjct: 1322 DFFSLVVCEQCGLFC-----LEDG-CKGCGNKTKLAIVEMPYAFKLLLQELMGMNIAPRL 1375

Query: 1155 KLAE 1158
            +L +
Sbjct: 1376 RLCD 1379


>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
          Length = 1255

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1267 (34%), Positives = 664/1267 (52%), Gaps = 149/1267 (11%)

Query: 10   PKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDR 69
            P D+   D+ + A    +  D + ++  F   +GLV Q LDSF+ FV+T ++++V  N  
Sbjct: 6    PYDDSYLDEDEEA--TITAEDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENSV 63

Query: 70   IV-------SGIDPSIFLRFKDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAP 116
            +        S  D  I +R  +++ G     +P+MT  DG +  + P   RL ++TY++P
Sbjct: 64   LTLDQNAPPSDSDDPILIRRYEIKFGTVLLSRPAMTEGDGSTSTMLPQEARLRNLTYSSP 123

Query: 117  ILVNIEYVQGSHTEKTTMEKND----------------------------------VVIG 142
            + + +        E+   E  D                                  V +G
Sbjct: 124  LYLEMTKKVSIARERVVFENADEDPNPDSDAQKRFGADANLDWVIEDGDDDQDPSKVFVG 183

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII--- 199
            ++PIML+S  C+L    EAEL    ECP D GGYF+I G+EKVL+ QE+ + N V +   
Sbjct: 184  KLPIMLKSKYCILKDLGEAELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKK 243

Query: 200  ----DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLL-LNQFVKK--------IPIMV 246
                 T     I ++V   +  + S  +    KG+ +     Q VK         +PI +
Sbjct: 244  APPSATPYVAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPIGI 303

Query: 247  VMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRST 303
            V +A+G+ SD++++  +  D   + +L    P IEE     I  +E AL+++  +    +
Sbjct: 304  VFRALGIVSDEDILNHICYDRNDTQMLEKLKPCIEEA--FVIQDREVALDWIGSRGNSQS 361

Query: 304  FGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
               P   +  R   I++   L ++   + +   K F++  M+ RM++  L +  +DD+D+
Sbjct: 362  LSRPKRVKYAR--DIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDH 419

Query: 364  VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVG 422
             G KRL+L+G L++ LF  LF  +  +V K     L K   ++R F+L+  +   ++T G
Sbjct: 420  FGKKRLDLAGPLLAGLFRMLFNKLTKDVFK----YLQKCVENNREFNLTLGVKSTTLTNG 475

Query: 423  LERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            L+ +L+TGN+ D K+    + G++QVL R +F  TL H+ R +    +  K++ PR L  
Sbjct: 476  LKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 535

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            + WG++CP +TPEG+ACGLVKNLALM ++T      P+I       +E LE    E L +
Sbjct: 536  THWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLE--EYEPLRS 593

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601
            PN+  V  NG+ +G HR P      ++ LRR   I   VS+  + + R   I +D GRVC
Sbjct: 594  PNATKVFVNGVWVGVHRDPAHLVSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVC 653

Query: 602  RPLVIAD---------------KGISRIKEHH-------MKELLDGVRSFDDFLREGLIE 639
            RPL + D               + I+R++E           EL      +D  + +G++E
Sbjct: 654  RPLFVIDNDTRSMNYGNLVLTKEHIARLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVE 713

Query: 640  YLDVNEENNALIALYEGD-----------ATPDT--------------------THIEIE 668
            Y+D  EE   +I +  GD           A P                      TH EI 
Sbjct: 714  YVDAEEEETVMIVMTPGDLETSRQIQLGKAVPGNAEDEPNKRVNAMSHRSAQTWTHCEIH 773

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+P+ 
Sbjct: 774  PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKPMA 833

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
            TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +
Sbjct: 834  TTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEK 893

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            +   S  ++  +P RT    + +++ H +      LDDDG+ APG  +   D+ I K +P
Sbjct: 894  RIGMSIVEQFEKPMRT----DTLRLKHGT---YEKLDDDGIVAPGVRVSGEDMIIGKTAP 946

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            +      +   GQ    +     +      E  +VD+V L ++  G   +K  +R T+ P
Sbjct: 947  IPPDSEEL---GQRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIP 1003

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ++GDKF+SRHGQKG  G   +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K 
Sbjct: 1004 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 1063

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                G     + F E      TV+S+S+ L  HG+   G +++Y+  TG  L A +F+GP
Sbjct: 1064 SALRGFEGDATPFTEV-----TVDSVSKILRAHGYQSRGFEVMYNAHTGLKLVAQVFLGP 1118

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
             YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + E
Sbjct: 1119 TYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKE 1178

Query: 1089 RLMVSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQS 1147
            RL   SD F V +C +CGL+    N K  +  C  CKN   IS + +PYA KLL QEL S
Sbjct: 1179 RLFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKTRISQVHIPYAAKLLFQELAS 1238

Query: 1148 MNIVPRL 1154
            MNI  R+
Sbjct: 1239 MNIAARM 1245


>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm3]
 gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm1]
          Length = 1137

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1164 (36%), Positives = 658/1164 (56%), Gaps = 77/1164 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV------SGIDPSI---FL 80
            D ++++  F K +GLV+Q LDSFN F+ + ++++V  N +IV      +G +       +
Sbjct: 8    DCWKVVSAFFKEKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLLAHSPTGEEEQARKYTI 67

Query: 81   RFKDVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTME 135
             FK + + +P      DG +  + P+  R+  +TY+A + ++I   E++     E  + +
Sbjct: 68   EFKQIYVSKPPTITEPDGRTSSMFPNDARVRSLTYSASLYIDIVKTEHIGDEEVESRSYK 127

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            K  + IG IPIMLRS  CV    D+ ++ R+ EC  D GGYFI+ G+EKVL+  E+++ N
Sbjct: 128  K--MPIGSIPIMLRSLYCVYSNTDDRDMNRIEECTYDQGGYFIVNGSEKVLIAHERMASN 185

Query: 196  RVIIDTDKKGNIN------ASVTSSTETVKSKTVIQM-------EKGKMYLL---LNQFV 239
             V I      +         SV      + S   I++         G  YLL   L    
Sbjct: 186  LVYIFKKSPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVSRASDSASGGGYLLRALLPHAK 245

Query: 240  KKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLE 296
              +P++V+ +A+G  SD+E+++ +     D    ++L PSIEE     I  Q  AL+Y+ 
Sbjct: 246  LDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEA--FVIQDQGVALDYIG 303

Query: 297  GKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
             +V  + F      R   A  + +  FL +V         K +     + +++   L + 
Sbjct: 304  KRVAPAGFSK--EKRIKFAKDLFQKEFLPHVGTKEFCETKKAYLFGYTINKLLMVALGRR 361

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
            + +D+D+ G KRL+L+G L++ LF  LFK M +E+ K +   +     +   +L   +  
Sbjct: 362  SEEDRDHYGRKRLDLAGPLMTGLFRMLFKKMSNELAKYMQRCIDG---NKDLNLIVGLRT 418

Query: 417  DSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
             ++T GL  +L+TGN+  +   M  R G+ QVL R ++I TL H+ RV+    +  K++ 
Sbjct: 419  STLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDGKLAK 478

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  S WGM+CP +TPEG+ACGLVKN ALM+HV+       ++ L    G+E LE +S
Sbjct: 479  PRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHVSVGTSSSVVVELLEECGLEGLEEVS 538

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
               +      LV  NG  +G HR P      ++ LRR+G++   +++  + +++ + I +
Sbjct: 539  PSAIVGATKVLV--NGSWVGVHRSPDDLMGTLKYLRRSGELSSEIAIVRDLREKEIRINT 596

Query: 596  DGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            DGGR CRPL I DKG+ RI E  ++       ++D+ + +G +E+LDV EE  A+IA+  
Sbjct: 597  DGGRACRPLFIVDKGVLRI-ERFLEANRHRKFTWDELMADGCVEFLDVEEEETAMIAVKP 655

Query: 656  GDATPDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
            GD        TH EI+P T+LGV A ++P+P HNQSPRNTYQ AMGKQAMG  A N L R
Sbjct: 656  GDLKNTDVMYTHCEIQPATMLGVCASVVPFPDHNQSPRNTYQSAMGKQAMGMYATNFLMR 715

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MDSL  +L YPQ+PL+ T+++  + + +L +GQNA VA+  YSGY+ ED++VMN+ ++DR
Sbjct: 716  MDSLSNVLCYPQKPLVITQSMNFLRFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDR 775

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R    + Y+ +  +      +  ++PDR     +RM+  ++  L     D DGL  P
Sbjct: 776  GLFRSFFYRTYSDMESRTKPEEQECFMKPDRRS--VQRMKNANYEKL-----DMDGLVPP 828

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +   DV I K        ++ +P G     Y+ A  T +G   E+ VVDRV L + K
Sbjct: 829  GTRVSGEDVLIGK--------TVSTPDG-----YKDASTTMRGT--ESGVVDRVILTT-K 872

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +G    +  +R  R P++GDKF+SRHGQKG  G ++  ED PF+  GI PD+I+NPH  P
Sbjct: 873  DGYRYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPEDMPFTADGITPDIIINPHAIP 932

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMT+G ++E L GK     G+    + F   S     VE ISE L KHG+   G +++Y
Sbjct: 933  SRMTIGHLVECLLGKVSCMSGKEGDATPFTGLS-----VEEISEELQKHGYQKRGFEVMY 987

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
            SG TG  +++ IF+GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEM
Sbjct: 988  SGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAHGPVQILTRQPVEGRSRDGGLRFGEM 1047

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSM 1132
            ERDC+I++GA+  + ERL   SD FEV +C  CG+    N +    +C  C    ++S +
Sbjct: 1048 ERDCMISHGAATFLKERLCDVSDKFEVFICNDCGVFCAGNKERGLYLCQLCGTRTSVSMV 1107

Query: 1133 KLPYACKLLIQELQSMNIVPRLKL 1156
             +PYA KLL+QE+ +M I  +++L
Sbjct: 1108 YMPYAFKLLVQEMMAMCISVQMRL 1131


>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
          Length = 1185

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1184 (36%), Positives = 661/1184 (55%), Gaps = 84/1184 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-------------DP 76
            D ++++ ++    GLV+Q   S+N F+   +++++      +  I               
Sbjct: 14   DTWEIIRKYFDENGLVQQQRASYNEFILQNVQEVIEDYKGQIEVIATPQYKPGTKQDYKQ 73

Query: 77   SIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ------GSHT 129
             I + F  VRI QP++T V+G  E+L P+M RL  +TY+  + V+I   +      GS  
Sbjct: 74   KIQVDFGRVRIAQPNITEVEGRKERLLPYMARLRKLTYSCQLFVDITLRKYKVASDGSEQ 133

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
                 E   V +G++P+MLRS  C L+GK   ++  L ECP D GGYF+I G+EKVLL Q
Sbjct: 134  LDNIDEHERVPLGKVPVMLRSEVCRLFGKYNKDIMDLKECPQDQGGYFVINGSEKVLLAQ 193

Query: 190  EQLSKNRVIIDTDKKGNIN--ASVTSSTET-VKSKTVIQME----------KGKMYLLLN 236
            E+ + N V +     G     A V S  E   K  + + M+             + L L 
Sbjct: 194  ERRANNLVFVFKKTLGKFAYVAEVGSQVEKGNKPPSTLYMKLWNRENNARFGASVVLTLP 253

Query: 237  QFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECAN-LDIYTQEKAL 292
               K+IPI++V +A+G+ESD+E+++ +    +D +    L PS++E A   D+ T+E AL
Sbjct: 254  YVRKEIPIVIVFRALGIESDREILEHIVYNLKDVQMMEALRPSLDEAAQGKDLSTREAAL 313

Query: 293  EYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMV 349
            +Y    + R   G   + RE R   A  IL    L ++ +   +   K +++  +  R++
Sbjct: 314  DY----IGRRALGMTTS-RENRIQHAHDILIRELLPHIGITEESLTKKQYFLGYVCNRLL 368

Query: 350  EAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD 409
               L +   DD+D+ GNKR++++G L++ LF+  FK ++ E +K++   L         +
Sbjct: 369  ACSLGRRQPDDRDHYGNKRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDN---GKEVN 425

Query: 410  LSQFIVRDSITVGLERTLSTGNFDVKRF----KMHRKGMTQVLARLSFIGTLGHMTRVSP 465
            ++    +D IT G++  ++TGN+ V +     +  R G++QVL+RL+F   L H+ R + 
Sbjct: 426  MNTAFKQDFITKGIKYCMATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHLRRANT 485

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               K  K++ PR L  +QWG++CP +TPEG+ACGLVKNL+LMT+V+       +I L   
Sbjct: 486  PIGKEGKIAQPRQLHNTQWGVVCPAETPEGQACGLVKNLSLMTYVSVGGASQVIIELLQA 545

Query: 526  LGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEF---VS 581
             G+E+LE L+   +   + F  +F NG+ +G    P   A+ +R+ RR   IG     V 
Sbjct: 546  GGMEELEELASPAICASSRFSKVFVNGVWVGMTDDPDNLANTLREQRREMTIGGMIHEVG 605

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIADK--GISRIKEHHMKELLDGVRS-FDDFLREGLI 638
            V  +  +R ++I++D GR+ RPL+I DK  G   +K  ++  +    ++ + + LR+G I
Sbjct: 606  VARDIGERELFISTDYGRLMRPLLIVDKETGFLNLKRSNIIHMTQNEQTTWSEILRKGFI 665

Query: 639  EYLDVNEENNALIALYEGDATPDT----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
            EY+DV EE    IA+   D   +     TH EI P  ILGV A +IP+P HNQSPRNTYQ
Sbjct: 666  EYIDVMEEETCYIAMLVKDVGSNDLYQYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 725

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQAMG  A N   R+D+L ++L YPQ+PL+ T +++ + + +L AGQN  VA+  Y
Sbjct: 726  SAMGKQAMGIYATNYQVRIDTLAHVLYYPQKPLVKTHSMDYLKFRELPAGQNLIVAIAVY 785

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVV 814
            SGY+ ED+++M++SS+DRG  R +  + YT   +       ++  +P R   G+   +V 
Sbjct: 786  SGYNQEDSLIMSQSSIDRGMFRSMFYRSYTDEQKTEGVLCLEQFEKPQREELGSASSRVN 845

Query: 815  HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK 874
            +        LD DGL  P + ++  D+ I K + L T             R  S R  + 
Sbjct: 846  YDK------LDVDGLVFPAQNVEDRDIIIGK-TTLVTNSDDSDQAQIAVKRDSSTRLRHN 898

Query: 875  GPDGETCVVDRVALCSDKN-GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
                E  VVD+V L ++ + G   ++  +R  R P++GDKF+SRHGQKG  G   +Q+D 
Sbjct: 899  ----EHGVVDQVLLTTNSDTGQRFVQIKVRAVRVPQIGDKFASRHGQKGTVGITYRQDDM 954

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            PF+  G+ PDLI+NPH  PSRMT+G +IE L GK G   G     + F E +     V+ 
Sbjct: 955  PFTSEGVSPDLIVNPHAIPSRMTIGHLIETLLGKVGCLTGDEGDATPFNEVN-----VKD 1009

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            +S+ L   G+  +G + +Y+G TG PL A +F GP YYQ+LKHMV DK+H+R  GP  ML
Sbjct: 1010 VSDMLHSRGYQRHGNERLYNGHTGRPLTALVFFGPTYYQRLKHMVDDKIHSRARGPTQML 1069

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
             RQP EGRAR+GGLR GEMERDC+IA+G++ ++ E+L   SD +   +C+ CGL+   N 
Sbjct: 1070 NRQPMEGRARDGGLRFGEMERDCMIAHGSANVLREKLFTQSDGYMTHICQDCGLIAIANL 1129

Query: 1114 KLKAGIC---STCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                  C   +TC+N  +I  +++PYA KLL QEL +M I PRL
Sbjct: 1130 DSNLYRCPNQATCRNS-SIGMIEIPYAAKLLFQELMAMQIAPRL 1172


>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
          Length = 1327

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1211 (35%), Positives = 639/1211 (52%), Gaps = 130/1211 (10%)

Query: 40   KVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLR------------FKDVRI 87
            +++ LV Q +DSFN F+N  +++IV  N ++V  +D  +  +            F  V +
Sbjct: 103  QIKSLVSQQIDSFNDFLNNSMQEIVDENSKLV--LDQELQFQGTAEKLRRYEINFGQVYL 160

Query: 88   GQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI-----------EYVQGSHTEKTTME 135
             QP+ T  DG    L P   RL ++TY++P+ V++           E  +    E  T E
Sbjct: 161  SQPTQTEADGSVAALFPQEARLRNLTYSSPLYVDVSMTVKVPHPDGELDENGEIEWITEE 220

Query: 136  ---------KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
                     ++   +G++P+M++S  C L   +E  L    ECPLD GGYFII G+EKVL
Sbjct: 221  DEAGMQQISQHREYLGKVPMMIKSRFCHLLKMEEDALFNADECPLDKGGYFIINGSEKVL 280

Query: 187  LIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGK--------- 230
            + QE+++ N V +              I + V S ++T  S TV  M  G          
Sbjct: 281  IAQERMAGNTVYVFGKAPPSPIAYLAEIRSVVESGSQTPSSLTVKMMRAGNPDKVGGATG 340

Query: 231  --MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECANLDI 285
              + + L      IPI+VV +A+G+  D++++Q +  DP  +    LL PS+EE     +
Sbjct: 341  SVIRVTLPYIRADIPILVVFRALGIIPDKDILQHICYDPNDTDMYELLKPSLEEA--FPV 398

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
              Q  AL+++    +R T      D+  + A  +L+   L +V     + + K ++   M
Sbjct: 399  QDQNVALDFIG---RRGTAAGLTRDKRIQYARDVLQKEVLPHVSTSAGSHQKKAYFFGYM 455

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILS 400
            + R++ A + +  +DD+D+ G KRL+L+G LV+ LF  LFK MI +V    QK VD    
Sbjct: 456  IHRLLMAAMQRRDLDDRDHFGKKRLDLAGPLVASLFRTLFKKMIKDVYRYLQKCVDT--- 512

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
                   F ++  I   +IT GL+ +L+TGN+ + K+    R G++QVL R +F  TL H
Sbjct: 513  ----QKEFKMNNAIRASTITNGLKYSLATGNWGEQKKAAAARAGVSQVLNRYTFASTLSH 568

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+++T      P+
Sbjct: 569  LRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYITVGTAIRPI 628

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            I       ++D   +S EE+ +      +F NG   G H  P     V+ +LRR G + +
Sbjct: 629  IDF-----LQDWGSVSLEEVTDLRKGAKVFVNGFWQGVHPNPDVLMKVLLRLRRTGTLNK 683

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL-----DGVRSFDDFL 633
             VS+  + ++R + I +D GRVCRPL+I      R++  H+  L+     D    FDD  
Sbjct: 684  SVSIVRDIREREIRIFADPGRVCRPLLIVQDQQLRLRRCHLDLLMRDPASDYAAGFDDMT 743

Query: 634  REGLIEYLDVNEENNALI---------ALYEGDA---------------------TPDTT 663
              G++E+LD  EE  A+I         A Y  D                          T
Sbjct: 744  NWGIVEFLDAEEEEMAMICMTYEDLEAAYYAHDKDHAKQGVDPTARLRSAITASQAQRWT 803

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   R+D++  +L YP
Sbjct: 804  HCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRLDTMANILFYP 863

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            Q+PL TTR+++ + + +L AGQNA VA++ YSGY+ ED+++MN+S++DRG  R    + Y
Sbjct: 864  QKPLATTRSMDYLHFRQLPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSFYYRTY 923

Query: 784  TAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYI 843
                ++      +   +P        R+  +         L DDG    GE ++  D+ I
Sbjct: 924  MDTEKRQGALQMESFEKP-------SRLDTLRLKRGTYDKLGDDGFVRVGEQVRGGDIII 976

Query: 844  NKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             K +P+      +   GQ    +     +      E   +DRV + ++ +G    K  +R
Sbjct: 977  GKTAPIAPDSEEL---GQRTKDHVKRDVSTPLKSTEEGYIDRVMITTNADGLKFAKVRVR 1033

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
             TR P+ GDKF+SRHGQKG  G   QQ D PF+  GI PDLI+NPH  PSRMT+G ++E 
Sbjct: 1034 STRIPQTGDKFASRHGQKGTIGITYQQNDMPFTSEGIVPDLIINPHAIPSRMTIGHLVEC 1093

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            L  K     G+    + F +      TV+S+S  L   GF   G +++ +G TG  L A 
Sbjct: 1094 LLSKVSALTGQEGDATPFSDV-----TVDSVSSVLKAQGFQDRGLEIMSNGHTGRKLAAQ 1148

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+IA+G +
Sbjct: 1149 VYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVA 1208

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
              + ER+  +SD F + VC +CG+    N   +   C  CKN   IS + +PY+ KLL  
Sbjct: 1209 GFLKERMFEASDAFRIHVCDICGMTAIANLMKQTFECRACKNKTAISQVLVPYSAKLLFS 1268

Query: 1144 ELQSMNIVPRL 1154
            ELQ+MNI  R+
Sbjct: 1269 ELQAMNIATRI 1279


>gi|302348973|ref|YP_003816611.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
            345-15]
 gi|302329385|gb|ADL19580.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
            345-15]
          Length = 1179

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1168 (36%), Positives = 651/1168 (55%), Gaps = 77/1168 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-------------VSGIDP 76
            D + +  ++++  GL +QHLDS+N FV   +++IV +   I                  P
Sbjct: 13   DLWIVFRQYIRETGLARQHLDSYNAFVTERMQEIVDSFGEIRPLYKQVSRRREAAPEEGP 72

Query: 77   SIFLRFKDVRIGQPSMT-VDG--VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTT 133
             I +    +RIG+P +   DG    + + P   RL + TY+AP+ + ++ V+      T 
Sbjct: 73   DIKIVLGKIRIGEPQVKEADGNLRRKDVTPLEARLRNFTYSAPLFLQMKLVENG----TE 128

Query: 134  MEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
            +  ++V +G  PIM++S    L      EL   GE P DPGGYFII G+E+V++ QE L+
Sbjct: 129  VYSDEVKVGDFPIMVKSVIDPLSKASYRELLEAGEDPNDPGGYFIINGSERVVVAQEDLA 188

Query: 194  KNRVIIDTDKKGNINASVTSSTETVKS-----KTVI--QMEKGKMYLLLNQFVKKIPIMV 246
             NR+I+         A +T S +TV +     + VI  +M  G + + +++   +IP +V
Sbjct: 189  VNRIIVGVSTANT--AKITHSAKTVSTILGLRRQVIVDRMSDGSLEVSMSRLNYRIPFIV 246

Query: 247  VMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            +MKA+G+E D E+   V  DP     LLPS E+ +   I T+E ALE+L  ++     G 
Sbjct: 247  MMKALGLEKDAEIAAAVSPDPDVQRELLPSFEKVSAA-IRTKEDALEFLGNRI---ATGQ 302

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
            P   R  RA   +   FL ++ +   +   K +++  M  R+++  L K   DDKD++ N
Sbjct: 303  PREIRIQRAEEFIDTQFLPHIGLTPADRLAKAYFLGEMANRVLQLYLGKRQEDDKDHLAN 362

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            KRL L+G L++ +F D F+ + + +   ++  +S+  R  R DL   +  D IT  +   
Sbjct: 363  KRLRLAGDLIAEIFRDAFQQLATLIASELEEYISQ-HRKVR-DLRSLVRPDIITERVRAA 420

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            L+TGN+       +R G++Q L R +++  L H+ RV     +       R L  + WG 
Sbjct: 421  LATGNW-----TGNRTGVSQALDRTNWMSLLSHLRRVISPLSRGESNFEARDLHGTHWGR 475

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL-----ELLSGE---- 537
            LCP +TPEG  CGLVKNLA+  +++    E  + ++   + +  L     E+ SGE    
Sbjct: 476  LCPFETPEGINCGLVKNLAMTAYISVGVNEQHVKNILMSMDLIPLDDAIKEIASGEPEAI 535

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL---RRAGKIGEFVSVFVNEKQ--RCVY 592
            E +  N   V  NG  +G     +  A++ RKL   RR+G +   VSV   E+   + VY
Sbjct: 536  EKYT-NMAKVFLNGKPIGY---VQDGAELRRKLIAMRRSGSLSYEVSVAYIEQGGIKEVY 591

Query: 593  IASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
            I +D GR+ RP+++ + G  ++ +  ++++  G  SF D +R G+IE+LD +EE NA +A
Sbjct: 592  INTDEGRLMRPVIVVENGKPKLTKEMVEKVKRGEMSFWDLVRNGVIEFLDPDEEENAYVA 651

Query: 653  LYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                + TP+ TH+E+    I  V+  + P+  HNQSPRNTYQ AM KQA+G  A N   R
Sbjct: 652  ESPEEVTPEHTHLEMWTPGIFSVVTSITPFLEHNQSPRNTYQAAMAKQALGLYALNYQYR 711

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MDS  YLL YPQ+P++ TR++E +GY+   +GQN  VA+M Y GY++EDAI+MNK+S+D 
Sbjct: 712  MDSHAYLLHYPQKPIVQTRSLEEIGYNDRPSGQNFIVAIMPYMGYNMEDAIIMNKTSVDY 771

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G GR    + YT +   YA    D I     T P  +     H  +     L  DG+  P
Sbjct: 772  GLGRAHFFRVYTVMENTYAGGLKDTI-----TVPSPKLYD--HKGDQYYTKLGPDGIIEP 824

Query: 833  GEIIKPNDVYINKESPLETRGS--IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 890
               +   DV + +ESP    G   +MS  G    R  S +  Y    GE  VVD V +  
Sbjct: 825  EVEVDGGDVLVGRESPPRFLGEERVMS-LGTLTKRDTSVQLRY----GEHGVVDTVLITQ 879

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
              + +L +K  +R  R PELGDKF+SRHGQKGV G +  + D P++E GI PD+I+NPHG
Sbjct: 880  TTDRNLLVKVKVRDLRIPELGDKFASRHGQKGVVGMLYPKYDMPYTEDGIVPDIIINPHG 939

Query: 951  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1010
             PSRMTVG+++EL+ GKA     R+  G+ F     + D V+     L+KHG+S +G ++
Sbjct: 940  IPSRMTVGQILELITGKAAAMEARYVDGTPF-----YKDDVDQYKIILIKHGYSPDGTEV 994

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1070
            +Y G TG  L+  I +G ++YQ+L HMV DKMHAR +G   +LTRQPTEG+AR GGLR G
Sbjct: 995  MYDGRTGQLLETPISIGVVFYQRLYHMVADKMHARATGKVQLLTRQPTEGKARQGGLRFG 1054

Query: 1071 EMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNIS 1130
            EMERDCL+ +GA+ML+ +R++  SD + + VC +CG + +YN +     C       +I 
Sbjct: 1055 EMERDCLVGHGATMLLRDRMLDGSDAYTMYVCTLCGHVAWYNSRKNVYECPIHGENGDIK 1114

Query: 1131 SMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             +K+PYA KL +QE+ SM I PR+++++
Sbjct: 1115 PVKVPYAFKLFLQEIMSMGIKPRIEVSD 1142


>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
 gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
          Length = 1166

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1174 (35%), Positives = 637/1174 (54%), Gaps = 80/1174 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++ ++ + +GLV+QHLDS+  F+   +  I+     I+  I   I L  +  RI  
Sbjct: 13   DLWIVMRKYFEEKGLVRQHLDSYERFIKELLPSILEEFKEII--ITDKIKLVIEKYRIDS 70

Query: 90   PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P  T V+G+ E   P  CRL ++TYA PI V++        E     + ++ +  +P+ML
Sbjct: 71   PKWTSVEGIEESKTPMECRLRNLTYATPIYVSVRI----EDESGYTREQELKLMDLPVML 126

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
            +S    L      EL   GE P DPGGYFII G+EKV++ QE L+ N +I+D  ++G+  
Sbjct: 127  KSSIDPLSKLTPQELIENGEDPRDPGGYFIINGSEKVIVAQEDLASNNIIVDVMQEGSSV 186

Query: 209  ---ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
               A VTS +   +S+ +I+  K  ++    Q   K P +++M A+G+ S+ E++     
Sbjct: 187  THVAKVTSVSRGRRSQLIIERRKDGVFYASFQG-HKFPALILMTALGLASEAEILYSTSL 245

Query: 266  DPRYSALLLPSI------------------EECANLDIYTQEKALE-YLEGKVKRSTFGS 306
             P     LLPSI                  EE   L    + K +E  L+    +   G 
Sbjct: 246  KPEIQTYLLPSILQVQEILPKLEIPEGASEEEVRRLKEEYRRKVIEEALDFIASKFIIGR 305

Query: 307  PPNDREGRAFSILRDVFLANVPVHNN--NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYV 364
            P  +R  RA  +L +  L ++ + ++      K  ++  M+ R++E  L     DDKD+ 
Sbjct: 306  PREERILRAQRLLDERLLPHIGIDSSPETRLKKAVFIGQMISRIIELQLGYRGPDDKDHY 365

Query: 365  GNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLE 424
             NKRL+L+G ++++L          E+++ ++  L+K   + + DL        IT  ++
Sbjct: 366  RNKRLKLAGDMLAVLLRAAMMGFAREIKEGIEKQLAK---TKKIDLKMVFKPSIITDRIQ 422

Query: 425  RTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
              ++TGN+        R G++Q+L R + + TL H+ RV     + +     R L  +QW
Sbjct: 423  HAMATGNW-----PGGRTGVSQLLDRTNMLSTLSHLRRVVSPLARGQPHFEARELHGTQW 477

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV---------------- 528
            G +CP +TPEG   GLVKNLALMT+V+   ++  + +L Y +GV                
Sbjct: 478  GRMCPFETPEGANIGLVKNLALMTNVSVGIDDKEIEALLYRVGVVPIVSTRTIDGKIHKG 537

Query: 529  ------EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                  ED+   +           V  NG ++G H+  +  A  +R LRR+GKI   V+V
Sbjct: 538  LIDMISEDVSKATEISEKYSGWCKVFLNGKLIGYHKDGEELARTIRSLRRSGKISSEVNV 597

Query: 583  FV--NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEY 640
                N+  + V + +D GR+ RPL++ + G+ ++   H+K L +G  +F+D +++G+IEY
Sbjct: 598  AYIGNKYIKEVVVNTDSGRIRRPLIVIENGVPKLTREHVKLLSEGKLTFEDLVKQGIIEY 657

Query: 641  LDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQ 700
            LD +EE NA IAL   D T + TH+EI    ILG+ A +IPYP HNQSPRN YQ AM KQ
Sbjct: 658  LDPDEEENAYIALQPSDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPRNMYQSAMAKQ 717

Query: 701  AMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIE 760
            ++G  A N   RMD+  + L YPQRPL+ TR + ++GY++  AGQN  VAV++Y+GY++E
Sbjct: 718  SLGLYAANFQRRMDTRGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVAVLTYTGYNME 777

Query: 761  DAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLL 820
            DA++MN+SS++RG  R    + YT +  KY     D I  P  T     R Q  +     
Sbjct: 778  DALIMNRSSVERGLARSTFFRLYTTVEYKYPGGIQDEITIPS-TNVRGYRGQKAYEK--- 833

Query: 821  LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGET 880
               L++DG+ AP   +   DV I K SP     +     G    +  S    ++    E 
Sbjct: 834  ---LEEDGIVAPETQVSGGDVLIGKVSPPRFLSAQEYEVGGLTRQDTSIVMRHE----EK 886

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             +VD V +  D  G+  IK  +R  R PELGDKF+SRHGQKGV G ++ Q D PF+E G+
Sbjct: 887  GIVDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGV 946

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 1000
             PDLI+NPH FPSRMTV +++E + GKA    GR   G+ F     +   +E +   L +
Sbjct: 947  TPDLIINPHAFPSRMTVAQLMESIAGKAAALEGRIIDGTPF-----YKTPIEDLQIILRR 1001

Query: 1001 HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            HG+ Y G++ +Y G TG  ++  +F+G +YYQKL HM  DK+HAR  GP  +LTRQPTEG
Sbjct: 1002 HGYPYTGEEAMYDGRTGELIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEG 1061

Query: 1061 RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1120
            R+R GGLR GEME DCLI +G+++L+ E +   SD   + VC +CG +G+Y+      +C
Sbjct: 1062 RSRAGGLRWGEMEVDCLIGHGSALLLKEAITDRSDSTIIYVCELCGSMGWYDRNKGKFVC 1121

Query: 1121 STCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               K    +  +++ YA KLL+QEL SM I PRL
Sbjct: 1122 PIHKEKGVLKPVEVSYAFKLLLQELMSMGIRPRL 1155


>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1198

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1196 (34%), Positives = 655/1196 (54%), Gaps = 96/1196 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++  + K  GLV Q + SFN F+   +++IV+ +      ++P  +L  +     Q
Sbjct: 28   DAWAVIRSYFKQHGLVSQQISSFNRFLEMNVQEIVKEHKHNRIKVEPQ-YLPSEGRDSTQ 86

Query: 90   PSMTVDGVSEKLN------------------PHMCRLSDMTYAAPILVNI--EYVQGSHT 129
             ++  D + E+++                  PH  R+ ++TYA  I V++  + +Q    
Sbjct: 87   ENIYYDVIFEQVHVNNSPRIQESDESYQAVFPHEARIRNLTYATEIYVDVKLQKLQQIPY 146

Query: 130  EKTTMEKND----------------VVIGRIPIMLRSCRCVLYGKDEAELAR-LGECPLD 172
            +KT +   +                  +G++P+M+RS  C L    + E+ R   EC  D
Sbjct: 147  DKTGLRDGEKREPKFTILEDSKPIQTFLGKVPVMVRSKFCHLRNLQDHEIVRNAKECLYD 206

Query: 173  PGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK---KGNINASVTSSTE-----------TV 218
             GGYF+I G EKV++ QE+++ N V++   +   K +  A + S  E            +
Sbjct: 207  QGGYFVINGGEKVIIAQERMANNIVLVFHRRPPSKYSWVAEIRSQAENSNKPPQQFMVAI 266

Query: 219  KSKTVIQMEKGKMYL-----LLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL- 272
            + K  +  + G  Y       +    + IP+ ++M+A+G  SD++++  +  DP  S + 
Sbjct: 267  QEKIKLGEQGGGNYARTICATIPAIREPIPVAILMRALGCVSDKQIINKICYDPEDSEMC 326

Query: 273  --LLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVH 330
              L PS+E+   + + T+E AL+++  +   + +    + R   A  IL   FL +V ++
Sbjct: 327  ESLKPSLEQA--MTVMTEEDALDFISKRGSGAQYSR--DTRIQYAQKILETEFLPHVSMN 382

Query: 331  NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISE 390
                  K ++V  M+ R+++A L + + DD+DY G KR++++G L+S LF  LF+    +
Sbjct: 383  AEGLYKKSYFVGYMVNRLIQASLGRTSEDDRDYYGKKRMDMAGSLLSGLFRQLFRQTTDD 442

Query: 391  VQKTV--DIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDV-KRFKMHRKGMTQV 447
            + K +  DI   K   S    L+  I  D+I+ GL+  L+TGN+   K+  + + G+ QV
Sbjct: 443  MLKYLKRDIDNGKQILS----LASAIKSDTISRGLKSALATGNWGKDKQGDVQKTGVAQV 498

Query: 448  LARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALM 507
            L RL+F  +L H+ R++    KS K++ PR L  S WGM+CP +TPEG+ACGLVKNL+LM
Sbjct: 499  LNRLTFASSLSHLRRLNTPLAKSGKLTKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLM 558

Query: 508  THVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVM 567
            + V+       LI +    GVEDL  L    L N     V  NG  +G HR        +
Sbjct: 559  SLVSVGSPNKTLIEILEDFGVEDLTSLDPIILQNKELVKVFVNGNWIGCHRNATDLVKNI 618

Query: 568  RKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR 627
            + +RR   I + +S+  +   + +   +D GRV RPL I +    RIK+ H+ +L++G +
Sbjct: 619  KDMRRTYTIPKEISIVRDIYTKEIKFFTDSGRVQRPLFIVENSALRIKKFHIPQLINGSK 678

Query: 628  SFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIP 681
            +F+D L+EGL E+LDV EE   +IA+   D           TH EI P  ILGV A +IP
Sbjct: 679  NFEDLLQEGLCEFLDVEEEETVMIAMTLDDLKGQKAIEYHYTHCEIHPSMILGVCASIIP 738

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+ T+++E + + +L
Sbjct: 739  FPDHNQSPRNTYQSAMGKQAMGVYTSNYQMRMDTLAHVLYYPQKPLVCTKSMEFLHFKEL 798

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             +G NA++A+  Y+GY+ ED+I++N+S++DRGF R +  + Y   +++      +    P
Sbjct: 799  SSGLNASIAIACYTGYNQEDSIMLNQSAIDRGFFRSVFFRTYDDCSKE-----GEVFAIP 853

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
            D       +     H +     LD DGL  PG ++  +D+ + K + + +          
Sbjct: 854  DFAKTSGRK-----HGDYDK--LDIDGLICPGVLVSGDDIIVGKVAKMTSNTFNEDLRDS 906

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
            T  +++      K    E+ ++D+V L ++       K  +R  R P++GDKF+SRHGQK
Sbjct: 907  TAKKFKDCSTPLK--HSESGIIDQVILTTNDEAQKFTKVKMRAVRIPQIGDKFASRHGQK 964

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G CG   +QED PF+  G+ PD+I+NPH  PSRMT+G +IE L  K     G     + F
Sbjct: 965  GTCGMTYRQEDLPFTREGVVPDMIVNPHAIPSRMTIGHLIECLLSKVASLNGSEGDATPF 1024

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
                     V+ IS+ L + G+   G +++Y+G TG   +  IF+GP +YQ+LKHMV DK
Sbjct: 1025 C-----GQNVDEISQLLHELGYQRYGNEVMYNGFTGRKFEVLIFLGPTFYQRLKHMVGDK 1079

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +H+RG GP  +LTRQPTEGR+R+GGLR GEMERDC+I++GA+  + ERL   SD + V +
Sbjct: 1080 IHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLKERLFDVSDCYRVHI 1139

Query: 1102 CRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            C+ CGL+   N   +   C+ C N  NI  +K+PYA KLLIQEL +M + PRL+ +
Sbjct: 1140 CQTCGLICQANLAEQRYECNNCNNTSNICQVKIPYAAKLLIQELMAMQLAPRLRTS 1195


>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
 gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
          Length = 1224

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1226 (35%), Positives = 661/1226 (53%), Gaps = 139/1226 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSFN FV+  ++ I+  +  ++             I    
Sbjct: 29   DSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRKY 88

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--------------- 122
             + F  + + +P +   DGV+  L P   RL ++TY++ + V+++               
Sbjct: 89   EISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHEAVDIPGRELK 148

Query: 123  YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
            Y   +   +   +   V IGR+PIMLRS  C L    E++L +L ECP D GGYFII G+
Sbjct: 149  YEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGS 208

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQ----- 237
            EKVL+ QE+ + N  I+   KK     S  S    ++S     +EKG  ++   Q     
Sbjct: 209  EKVLIAQERSAGN--IVQVFKKAA--PSPISHVAEIRSA----LEKGSRFISTLQVKLFA 260

Query: 238  --------------FVKK-IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEE 279
                          ++K+ IPI+++ +A+G+  D E+++ +     D +   +L P +E+
Sbjct: 261  REGNSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVED 320

Query: 280  CANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCF 339
                 I  +E AL+++ G+ + +  G     R   A  IL+  FL ++         K F
Sbjct: 321  --GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAF 376

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTV 395
            ++  M+ R++   L++   DD+D+ G KRL+L+G L++ LF+ LF+ +  ++    Q+TV
Sbjct: 377  FLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFRYMQRTV 436

Query: 396  DIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFI 454
            +        +  F++   I   +IT GL+  L+TGN+  ++  M  R G++QVL R ++ 
Sbjct: 437  E-------EAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYS 489

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++   
Sbjct: 490  STLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 549

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
            +  P+I+     G+E LE     +  +P +  V  NG+  G HR P    + +R LRR G
Sbjct: 550  DPMPIITFLSEWGMEPLEDYIPHQ--SPEATRVFVNGVWHGVHRNPARLMETLRTLRRKG 607

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL----- 623
             I   VS+  + +++ + I +D GRV RPL I D   +      RI++ H+ +L+     
Sbjct: 608  DINPEVSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHISKLMATEYQ 667

Query: 624  DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATP--------------- 660
            D    F+D         L +GL+EY+D  EE   LI++   D  P               
Sbjct: 668  DIEGGFEDSEEYTWTSLLNDGLVEYIDAEEEETILISMQPEDLEPVQENTFNEDDDDLAR 727

Query: 661  ---------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                       TH E+ P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 728  RIKATHHATTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQAAMGKQAMGVFLTNYNV 787

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+D
Sbjct: 788  RMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSID 847

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R +  + Y    +KY  S ++   +P RT     RM+   +       LDDDGL A
Sbjct: 848  RGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDK-----LDDDGLIA 900

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +   D+ I K +P+      +   GQ  + +     +      E  +VD++ + ++
Sbjct: 901  PGVRVSGEDIIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQILITTN 957

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            ++G   +K  +R T+ P++GDKF+SRHGQKG  G    +ED PF+  GI PDLI+NPH  
Sbjct: 958  QDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAI 1017

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMTV  +IE L  K     G     S F +      TVE IS+ L +HG+   G +++
Sbjct: 1018 PSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-----TVEGISKLLREHGYQSRGFEVM 1072

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y+G TG  L + IF GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR GE
Sbjct: 1073 YNGHTGKKLMSQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGE 1132

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAGICSTCKNGDN 1128
            MERDC+IA+GA+  + ERLM +SD F V +C +CGL+      NH      C  C N  +
Sbjct: 1133 MERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLNHNQFE--CRGCDNKID 1190

Query: 1129 ISSMKLPYACKLLIQELQSMNIVPRL 1154
            I  + +PYA KLL QEL +MNI PRL
Sbjct: 1191 IYQIHIPYAAKLLFQELMAMNITPRL 1216


>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
          Length = 1255

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1269 (34%), Positives = 665/1269 (52%), Gaps = 153/1269 (12%)

Query: 10   PKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDR 69
            P D+   D+ + A    +  D + ++  F   +GLV Q LDSF+ FV+T ++++V  N  
Sbjct: 6    PYDDSYLDEDEEA--TITAEDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENAI 63

Query: 70   IV-------SGIDPSIFLRFKDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAP 116
            +        S  D  + +R  +++ G     +P+MT  DG +  + P   RL ++TY++P
Sbjct: 64   LTLDQNAPPSDSDDPVLIRRYEIKFGTVLLSRPAMTEGDGSTSAMLPQEARLRNLTYSSP 123

Query: 117  ILVNIEYVQGSHTEKTTMEKND----------------------------------VVIG 142
            + + +        E+  +E  D                                  V +G
Sbjct: 124  LYLEMTKKVSVARERVAVENADEDPNPDSDTQKRFGADANLDWVIEDGEDDQDPSKVFVG 183

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
            ++PIML+S  C+L    E EL    ECP D GGYF+I G+EKVL+ QE+ + N  I+   
Sbjct: 184  KLPIMLKSKYCILKDLGETELYNWNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVF 241

Query: 203  KKG---------NINASVTSSTETVKSKTVIQMEKGKMYLL-LNQFVKK--------IPI 244
            KK           I ++V   +  + S  +    KG+ +     Q VK         +PI
Sbjct: 242  KKAPPSATPYIAEIRSAVEKGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPI 301

Query: 245  MVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKR 301
             +V + +G+ SD++++  +  D   + +L    P IEE     I  +E AL+++  +   
Sbjct: 302  GIVFRGLGIVSDEDILNHICYDRNDTQMLEKLKPCIEEA--FVIQDREVALDWIGSRGNS 359

Query: 302  STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
             +   P   +  R   I++   L ++   + +   K F++  M+ RM++  L +  +DD+
Sbjct: 360  QSLSRPKRVKYAR--DIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDR 417

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSIT 420
            D+ G KRL+L+G L++ LF  LF  +  +V K     L K   ++R F+L+  +   ++T
Sbjct: 418  DHFGKKRLDLAGPLLAGLFRMLFNKLTKDVFK----YLQKCVENNREFNLTLGVKSTTLT 473

Query: 421  VGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL+ +L+TGN+ D K+    + G++QVL R +F  TL H+ R +    +  K++ PR L
Sbjct: 474  NGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQL 533

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WG++CP +TPEG+ACGLVKNLALM ++T      P+I       +E LE    E L
Sbjct: 534  HNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLE--EYEPL 591

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
             +PN+  V  NG+ +G HR P      ++ LRR   I   VS+  + + R   I +D GR
Sbjct: 592  RSPNATKVFVNGVWVGVHRDPAHLVSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGR 651

Query: 600  VCRPLVIAD---------------KGISRIKEHH-------MKELLDGVRSFDDFLREGL 637
            VCRPL + D               + I+R++E           EL      +D  + +G+
Sbjct: 652  VCRPLFVIDNDTRSMNYGNLVLTKEHITRLEEDKEAAIGMDRDELEARQMGWDGLVNQGV 711

Query: 638  IEYLDVNEENNALIALYEGD-----------ATPDT--------------------THIE 666
            +EY+D  EE   +I +  GD           A P+                     TH E
Sbjct: 712  VEYVDAEEEETVMIVMTPGDLETSRQIQLGKAVPENAEDEPNKRVNAMSHRSAQTWTHCE 771

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+P
Sbjct: 772  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYDQRMDTMANILYYPQKP 831

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            + TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT  
Sbjct: 832  MATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 891

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             ++   S  ++  +P RT    + +++ H +      LDDDG+ APG  +   D+ I K 
Sbjct: 892  EKRIGMSIVEQFEKPMRT----DTLRLKHGT---YEKLDDDGIVAPGVRVSGEDMIIGKT 944

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P+      +   GQ    +     +      E  +VD+V L ++  G   +K  +R T+
Sbjct: 945  APIPPDSEEL---GQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTK 1001

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             P++GDKF+SRHGQKG  G   +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    
Sbjct: 1002 IPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLS 1061

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     G     + F E      TV+S+S+ L  HG+   G +++Y+  TG  L A +F+
Sbjct: 1062 KVSALRGFEGDATPFTEV-----TVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFL 1116

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  +
Sbjct: 1117 GPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFL 1176

Query: 1087 FERLMVSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
             ERL   SD F V +C +CGL+    N K  +  C  CKN   IS + +PYA KLL QEL
Sbjct: 1177 KERLFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKTRISQVHIPYAAKLLFQEL 1236

Query: 1146 QSMNIVPRL 1154
             SMNI  R+
Sbjct: 1237 ASMNIAARM 1245


>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1233 (35%), Positives = 655/1233 (53%), Gaps = 137/1233 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I+++V  + R++              +   
Sbjct: 77   DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRY 136

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTE------ 130
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V++ + V  S         
Sbjct: 137  EITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEHE 196

Query: 131  --------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
                    K       V +G++PIMLRS  C+L    E E   L ECP D GGYF+I G+
Sbjct: 197  LEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGS 256

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY----- 232
            EKVL+ QE+ + N  I+   KK   +     A + S+ E  +   +I   + K+Y     
Sbjct: 257  EKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--RGSRLISSMQIKLYGREEK 312

Query: 233  --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                      L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 313  STSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEE-- 370

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 371  GFVIQEREVALDFIG---RRGALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFL 427

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 428  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEN 487

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+
Sbjct: 488  ---DKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 544

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P++
Sbjct: 545  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPIL 604

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR G I   V
Sbjct: 605  YFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEV 662

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---------- 623
            S+  + +++   I +D GRV RPL I D       KG  ++++ H+ +LL          
Sbjct: 663  SIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYAT 722

Query: 624  ------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---------ATPDTT----- 663
                  +G   +   + +G++EY+D  EE   +IA+   D         AT   +     
Sbjct: 723  NEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEE 782

Query: 664  ---------------------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
                                 H EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 783  QELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 842

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+
Sbjct: 843  GVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDS 902

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            ++MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +     
Sbjct: 903  MIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YE 955

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +
Sbjct: 956  KLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRS--TESGI 1012

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +GI P
Sbjct: 1013 VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVP 1072

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            DLI+NPH  PSRMTV  +IE L  K     G     S F +      T E++S+ L +HG
Sbjct: 1073 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAVSKLLREHG 1127

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+
Sbjct: 1128 YQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRS 1187

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICS 1121
            R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC VCGL+    N K     C 
Sbjct: 1188 RDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECR 1247

Query: 1122 TCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1248 SCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1280


>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
          Length = 1236

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1233 (35%), Positives = 655/1233 (53%), Gaps = 137/1233 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I+++V  + R++              +   
Sbjct: 22   DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRY 81

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTE------ 130
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V++ + V  S         
Sbjct: 82   EITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEHE 141

Query: 131  --------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
                    K       V +G++PIMLRS  C+L    E E   L ECP D GGYF+I G+
Sbjct: 142  LEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGS 201

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY----- 232
            EKVL+ QE+ + N  I+   KK   +     A + S+ E  +   +I   + K+Y     
Sbjct: 202  EKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--RGSRLISSMQIKLYGREEK 257

Query: 233  --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                      L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 258  STSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEE-- 315

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 316  GFVIQEREVALDFIG---RRGALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFL 372

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 373  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEN 432

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+
Sbjct: 433  ---DKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 489

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P++
Sbjct: 490  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPIL 549

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR G I   V
Sbjct: 550  YFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEV 607

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---------- 623
            S+  + +++   I +D GRV RPL I D       KG  ++++ H+ +LL          
Sbjct: 608  SIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYAT 667

Query: 624  ------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---------ATPDTT----- 663
                  +G   +   + +G++EY+D  EE   +IA+   D         AT   +     
Sbjct: 668  NEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEE 727

Query: 664  ---------------------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
                                 H EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 728  QELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 787

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+
Sbjct: 788  GVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDS 847

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            ++MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +     
Sbjct: 848  MIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YE 900

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +
Sbjct: 901  KLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRS--TESGI 957

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +GI P
Sbjct: 958  VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVP 1017

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            DLI+NPH  PSRMTV  +IE L  K     G     S F +      T E++S+ L +HG
Sbjct: 1018 DLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAVSKLLREHG 1072

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+
Sbjct: 1073 YQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRS 1132

Query: 1063 RNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICS 1121
            R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC VCGL+    N K     C 
Sbjct: 1133 RDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFECR 1192

Query: 1122 TCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1193 SCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1225


>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus kamchatkensis
            1221n]
 gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus kamchatkensis
            1221n]
          Length = 1149

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1170 (35%), Positives = 637/1170 (54%), Gaps = 86/1170 (7%)

Query: 37   EFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMT-VD 95
            ++ + +GLV+QHLDS+  F+   +  I+     I+  I   I L  +  RI  P  T V+
Sbjct: 3    KYFEEKGLVRQHLDSYERFIKEILPSILEEFKEII--ITNKIKLVIEKYRIDSPKWTSVE 60

Query: 96   GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVL 155
            G+ E   P  CRL ++TYA PI V++        E     + ++ +  +P+ML+S    L
Sbjct: 61   GIEESKTPMECRLRNLTYATPIYVSVRI----EDESGYTREQELKLMDLPVMLKSSIDPL 116

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN---ASVT 212
                  EL   GE P DPGGYFII G+EKV++ QE L+ N +I+D  ++G+     A VT
Sbjct: 117  SKLTPQELIENGEDPRDPGGYFIINGSEKVIVAQEDLASNNIIVDVMQEGSSVTHVAKVT 176

Query: 213  SSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL 272
            S +   +S+ +I+  K  ++    Q   K P +++M A+G+ S+ E++      P     
Sbjct: 177  SVSRGRRSQLIIERRKDGVFYASFQG-HKFPALILMIALGLASEAEMLYSTSLKPEIQTY 235

Query: 273  LLPSI------------------EECANL-DIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            LLPSI                  EE   L + Y ++   E L+    +   G P  +R  
Sbjct: 236  LLPSILQVQEILPKLEIPEGASEEEVRRLKEEYRRKVIEEALDFIASKFIIGRPREERIL 295

Query: 314  RAFSILRDVFLANVPVHNN--NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
            RA  +L +  L ++ + ++      K  ++  M+ R++E  L     DDKD+  NKRL+L
Sbjct: 296  RAERLLDERLLPHIGIDSSPETRLKKAVFIGQMISRIIELQLGYREPDDKDHYRNKRLKL 355

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G ++++L          E+++ ++  L+K   + + DL        IT  ++  ++TGN
Sbjct: 356  AGDMLAVLLRAAMMGFAREIKEGIEKQLAK---TKKIDLKMVFKPSIITDRIQHAMATGN 412

Query: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
            +        R G++Q+L R + + TL H+ RV     + +     R L  +QWG +CP +
Sbjct: 413  W-----PGGRTGVSQLLDRTNMLSTLSHLRRVVSPLARGQPHFEARELHGTQWGRMCPFE 467

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV----------------------E 529
            TPEG   GLVKNLALMT+V+   ++  + +L Y +GV                      E
Sbjct: 468  TPEGANIGLVKNLALMTNVSVGIDDKEIEALLYRIGVVPIVSTRTIDGKIHKGLIDMISE 527

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV--NEK 587
            D+   S           V  NG ++G H+  +  A  +R LRR+GKI   V+V    N+ 
Sbjct: 528  DVSKASEISEKYSGWCKVFLNGKLIGYHKDGEELARTIRSLRRSGKISSEVNVAYIGNKY 587

Query: 588  QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN 647
             + V + +D GR+ RPL++ + G+ ++   H+K L +G  +F+D +++G++EYLD +EE 
Sbjct: 588  IKEVVVNTDSGRIRRPLIVIENGVPKLTREHVKLLSEGKLTFEDLVKQGIVEYLDPDEEE 647

Query: 648  NALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
            NA IAL   D T + TH+EI    ILG+ A +IPYP HNQSPRN YQ AM KQ++G  A 
Sbjct: 648  NAYIALQPSDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPRNMYQSAMAKQSLGLYAA 707

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD+  + L YPQRPL+ TR + ++GY++  AGQN  VAV++Y+GY++EDA++MN+
Sbjct: 708  NFQRRMDTRGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVAVLTYTGYNMEDALIMNR 767

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS++RG  R    + YT +  KY     D I  P  T     R Q  +        L++D
Sbjct: 768  SSVERGLARSTFFRLYTTVEYKYPGGIQDEITIPS-TNVRGYRGQKAYEK------LEED 820

Query: 828  GLAAPGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            G+ AP   +   DV I K SP   L T+   +    + D+     R   KG      +VD
Sbjct: 821  GIVAPETQVSGGDVLIGKVSPPRFLSTQEYEVGGLTRQDTSI-VMRHEEKG------IVD 873

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
             V +  D  G+  IK  +R  R PELGDKF+SRHGQKGV G ++ Q D PF+E G+ PDL
Sbjct: 874  TVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTPDL 933

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH FPSRMTV +++E + GKA    GR   G+ F     +   +E +   L +HG+ 
Sbjct: 934  IINPHAFPSRMTVAQLMESIAGKAAALEGRIIDGTPF-----YKTPIEDLQIILRRHGYP 988

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            Y G++ +Y G TG  ++  +F+G +YYQKL HM  DK+HAR  GP  +LTRQPTEGR+R 
Sbjct: 989  YTGEEAMYDGRTGELIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRA 1048

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEME DCLI +G+++L+ E +   SD   + VC +CG +G+Y+      +C   K
Sbjct: 1049 GGLRWGEMEVDCLIGHGSALLLKEAMTDRSDSTIIYVCELCGSMGWYDRNKGKFVCPIHK 1108

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                +  +++ YA KLL+QEL SM I PRL
Sbjct: 1109 EKGVLKPVEVSYAFKLLLQELMSMGIRPRL 1138


>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
            lozoyensis 74030]
          Length = 1263

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1257 (34%), Positives = 658/1257 (52%), Gaps = 159/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV Q LDSF+ FV+T ++++V  N ++        S  D  I LR 
Sbjct: 24   DCWAVISSFFESKGLVSQQLDSFDEFVSTTMQELVEENSQLTLDQNNPPSSDDNPIALRR 83

Query: 83   KDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +++ G     +P+MT  DG +  + P   RL ++TY++P+ + +               
Sbjct: 84   YEIKFGTVLLSRPAMTEGDGTTAVMLPQEARLRNLTYSSPLYLEMTKKVSVAVERPVSLN 143

Query: 122  ---------EYVQGSHTEKTTMEKND-----------------VVIGRIPIMLRSCRCVL 155
                      +  G    +   E  D                 V IG++PIML+S  C+L
Sbjct: 144  EMDEEQLAEHHRTGEFPTRLLWEDEDSGQEITAAGDKQDKIDRVYIGKLPIMLKSKYCIL 203

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK---------GN 206
               DE EL    ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           
Sbjct: 204  KDLDEDELYGWNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKPLPSPTPYIAE 261

Query: 207  INASVTSSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I +++   +  + S T+    KG          +   L      IPI VV +A+G+ SD+
Sbjct: 262  IRSALEKGSRLISSMTIKLFAKGDGQRGGFGQTIKSTLPYVKSDIPIAVVFRALGVVSDE 321

Query: 258  EVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            +++  +     D +   +L P IEE     I  +E AL+++  +   +T       R  R
Sbjct: 322  DILNHICYDRSDTQMLEMLKPCIEEA--FVIQDREVALDFIGKRGNSNTLTRDKRVRHAR 379

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
               I++   L ++     +   K F++  M+ +M++  L +   DD+D+ G KRL+L+G 
Sbjct: 380  --DIMQKELLPHISQKEGSETRKAFFLGYMVHKMLQCALGRRECDDRDHFGKKRLDLAGP 437

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-D 433
            L++ LF +LFK +  +V K +   +     +  F+L+  +   ++T GL+ +L+TGN+ D
Sbjct: 438  LLAKLFRNLFKRLTGDVYKYLQRCVEN---NREFNLTLGVKSTTLTNGLKYSLATGNWGD 494

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
             K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TP
Sbjct: 495  QKKAAQSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 554

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EG+ACGLVKNLALM +VT      P+I       +E LE    E L +PN+  V  NG+ 
Sbjct: 555  EGQACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLE--EYEPLRSPNATKVFVNGVW 612

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD----- 608
            +G HR P      ++ LRR+  I   VS+  + + R   I +D GRVCRPL + D     
Sbjct: 613  VGVHRDPAHLVRTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVDS 672

Query: 609  --KGISRIKEHHMKELLD----------------GVRSFDDFLREGLIEYLDVNEENNAL 650
              KG   + + H++ L +                G   F   +  G++EYLD  EE   +
Sbjct: 673  QNKGNLVLNKDHVRRLEEDQLMPANMDLEQKAEAGYFGFQGLINAGVVEYLDAEEEETVM 732

Query: 651  IALYEGDAT------------PD-------------------TTHIEIEPFTILGVIAGL 679
            I +   D              PD                    TH EI P  ILG+ A +
Sbjct: 733  IVMTPEDLDISRQLQAGYALRPDESGDLNKRVKAPMKPTAHIWTHCEIHPSMILGICASI 792

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + 
Sbjct: 793  IPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFR 852

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  
Sbjct: 853  ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFE 912

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R+    + +++ H +      LDDDG+ APG  +   D+ I K +P+      +   
Sbjct: 913  KPFRS----DTLKLKHGT---YDKLDDDGIVAPGVRVSGEDIIIGKTAPMAPDAEELGQR 965

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
             +  ++ R A    +    E  +VD+V + ++  G   +K  +R T+ P++GDKF+SRHG
Sbjct: 966  TKAHTK-RDASTPLRST--ENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHG 1022

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   + ED PF+ +GI PDLI+NPH  PSRMT+  +IE    K     G     +
Sbjct: 1023 QKGTIGITYRMEDMPFTSQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDAT 1082

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F E      TV+S+S+ L  HG+   G +++Y G TG  + A +F+GP YYQ+L+HMV 
Sbjct: 1083 PFTEV-----TVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVD 1137

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+I++GA+  + ERL   SD F V
Sbjct: 1138 DKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGAAAFLKERLFEVSDAFRV 1197

Query: 1100 QVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+     KL++    C +CKN   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1198 HLCDICGLMTPIA-KLQSQNFECRSCKNKTRISQIHIPYAAKLLFQELASMNIAARM 1253


>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
 gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1360

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1254 (34%), Positives = 659/1254 (52%), Gaps = 156/1254 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----SGIDPS-----IFL 80
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++    +  DP+     I  
Sbjct: 123  DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYDPNEDENPIIK 182

Query: 81   R-----FKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------ 122
            R     F  V + +P+ T  DG + +L PH  RL ++TY+  +L +I             
Sbjct: 183  RRYEITFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADISNRIMVAREHNAM 242

Query: 123  -----------YVQGSHTEKTTMEKND----------VVIGRIPIMLRSCRCVLYGKDEA 161
                       Y  G  T+    E+ D          V IG++P+MLRS  C L  + +A
Sbjct: 243  VEGEDDDLDGGYTAGGATQ-IRWEREDMPGEEEAAARVFIGKLPVMLRSELCHLRNQSDA 301

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSST 215
            +L  L ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G       I ++V   T
Sbjct: 302  DLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGT 361

Query: 216  ETVKSKTVIQMEK----GK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV-- 263
              + S T+   E     GK       Y  L     +IP+ +V +A+G+ SD+E++  +  
Sbjct: 362  RLISSFTIKWAENSLAGGKRVPGPFAYATLPYVKSEIPMAIVFRALGIVSDEEILSHIVY 421

Query: 264  -GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
               D +   LL PSIEE +   +  +E AL+++    +R    +  + R   A  I++  
Sbjct: 422  DRTDTQMLELLKPSIEEGSV--VQDRESALDFI---ARRGAQQATKDRRLKFARDIMQRE 476

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
            FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  
Sbjct: 477  FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 536

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHR 441
            LF  +  +V K +   +     +  F++   +    IT GL+ +L+TGN+ D K+    +
Sbjct: 537  LFLKLTKDVFKYLQRCVES---NQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAK 593

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGLV
Sbjct: 594  AGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLV 653

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNL+LM +V+   +  P+I       ++ LE    ++  +P++  +  NG+ +G H  P 
Sbjct: 654  KNLSLMCYVSVGSDASPIIDFMTQRNMQLLE--EYDQNQSPDATKIFVNGVWVGVHSNPH 711

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM-- 619
                V+++LRR G +   +S+  + + R   I +D GRV RPL + +  I +   H +  
Sbjct: 712  QLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVIENDIRKPNRHQLIF 771

Query: 620  -----------------------KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
                                   +++      +   +++G+IEYLD  EE  A+I     
Sbjct: 772  TKEISRKLTYEQETQDQRQGWSEEDIAAATYGWKGLIQDGVIEYLDAEEEETAMITFSPE 831

Query: 657  D-----------------------------ATPDT-----THIEIEPFTILGVIAGLIPY 682
            D                               PDT     TH EI P  ILG+ A +IP+
Sbjct: 832  DLDAWRDMKTGRAPDERRLKDPKFRLSSIKPKPDTRVHAYTHCEIHPAMILGICASIIPF 891

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L 
Sbjct: 892  PDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELP 951

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+ +Y GY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P 
Sbjct: 952  AGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPT 1011

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R      R++   +       LDDDG+ APG  +  +D+ I K +P+ T    +   GQ 
Sbjct: 1012 RA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIATDAQEL---GQK 1061

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
             + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG
Sbjct: 1062 TTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKG 1121

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
              G   +QED PFS  G+ PDLI+NPH  PSRMT+  ++E L  K G   GR    + F 
Sbjct: 1122 TIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAIEGREGDATPFT 1181

Query: 983  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1042
            +      TV+ ISE L   G+   G +++Y+G TG  ++  IF+GP YYQ+L+HMV DK+
Sbjct: 1182 DI-----TVDQISEILESKGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKI 1236

Query: 1043 HARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC 1102
            HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC
Sbjct: 1237 HARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVC 1296

Query: 1103 RVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +CGL+     +LK G   C  C+N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1297 DICGLMSPIA-QLKKGQYECRPCQNKTRISQIHIPYAAKLLFQELLAMNIATRM 1349


>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
          Length = 1260

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1250 (34%), Positives = 653/1250 (52%), Gaps = 155/1250 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSG--------------ID 75
            D + ++  F   +GLV Q LDSF+ F +T +++IV     IV                I 
Sbjct: 31   DCWTVIHSFFDAKGLVSQQLDSFDEFASTTMQEIVSETAPIVIDQNIASEDEGSNMPIIK 90

Query: 76   PSIFLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ--------G 126
              I L  +DV I Q +MT  DGV+  L PH  RL ++TYA+PI ++I   Q        G
Sbjct: 91   KRIELHLQDVTISQAAMTDGDGVTRALFPHESRLRNLTYASPIFLSITKKQKLCRERSVG 150

Query: 127  SHTEKTTMEKN------------------------DVVIGRIPIMLRSCRCVLYGKDEAE 162
             + ++T    +                        D+ IG++PIML+S  C L  + E E
Sbjct: 151  GYLDETGYWNDPPDFDGQTELHWEEDPDHPDETQGDIFIGKLPIMLKSKICALRNRSEQE 210

Query: 163  LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETV--KS 220
            L    ECP D GGYFII G+EKVL+ QE+ + N  I+   KK   N  V +   +   K 
Sbjct: 211  LYAFQECPFDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKKGTNTPVVAEIRSAIEKG 268

Query: 221  KTVIQMEKGKMYL------LLNQFVK--------KIPIMVVMKAMGMESDQEVVQMV--G 264
              +I   + K+Y          Q +K         IPI +V +A+G+ SD++++  +   
Sbjct: 269  TRLISSMQLKLYKQSANSNAHGQTIKVSVPYIKSDIPIAIVFRALGVVSDEDILNHICSK 328

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---AFSILRD 321
             D R    L P +EE     I  ++ AL+++  +      G     +E R   A  I++ 
Sbjct: 329  SDTRMLEYLKPCLEEA--FVIQDRDSALDHIGRR------GQQQGTKERRIRYARDIMQK 380

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++     +   K F++  M+ R+++  L +   DD+D+ G KRL+L+G L++ +F 
Sbjct: 381  EFLPHISQEEGSETKKAFFLGYMVNRLLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFR 440

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
              F+ ++ +++  +   +        F+++  I  + IT GL   L+TGN+ D K+    
Sbjct: 441  LKFQQLVKDMKTYLHRCIEG---GREFNIALAIKSNIITSGLRYCLATGNWGDQKKAASA 497

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGL
Sbjct: 498  KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 557

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNL+LM +VT      PLI      G++ LE    + + NP +  +  NG  +G H+  
Sbjct: 558  VKNLSLMCYVTVGTPAEPLIDFMRQRGMDLLE--EYDPVLNPKATKIFLNGTWIGVHKDA 615

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI-------ADKGISR 613
                + +R LRR G +   V++  + ++R + I +D GRVCRPL +        + G   
Sbjct: 616  GGLTNTLRGLRRKGVVSFEVTIIRDVREREIKIFTDCGRVCRPLFVVENDPKSTNNGNLV 675

Query: 614  IKEHHMKELLDG------------------VRSFDDFLREGLIEYLDVNEENNALIALY- 654
            ++  H + L D                   +  +   + +G++EYLD  EE  A+I +  
Sbjct: 676  LQREHCQRLADDQNVLAELQGVSEEERETKIFGWKGLIDKGVVEYLDAEEEETAMIIMTP 735

Query: 655  ----------EGDATPDT-------------------THIEIEPFTILGVIAGLIPYPHH 685
                      +G    DT                   TH EI P  ILG+ A +IP+P H
Sbjct: 736  EDLEEHKLMRQGVQMDDTRADPHRRIKNKPNPYVRTWTHCEIHPAMILGICASIIPFPDH 795

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQ
Sbjct: 796  NQSPRNTYQSAMGKQAMGVTLTNYNTRMDTMANVLYYPQKPLATTRSMEYLKFRELPAGQ 855

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   S  +   +P R  
Sbjct: 856  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRVGMSVVEAFEKPVRAD 915

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
                RM+   +  L     D+DG+  PG  +   D+ I K +P+      +   GQ  + 
Sbjct: 916  --TMRMKKGTYDKL-----DEDGIITPGSRVSGEDILIGKTAPMPPDAEEL---GQRTTA 965

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            +     +      E  V+D+V + ++  G   +K   R T+ P++GDKF+SRHGQKG  G
Sbjct: 966  HTKRDVSTPLRSTENGVIDQVLVTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTVG 1025

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K G   G+    + F +  
Sbjct: 1026 ITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALNGQEGDATPFTDV- 1084

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                TV S+SE L  HGF   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR
Sbjct: 1085 ----TVTSVSEILASHGFQQRGFEVMYNGHTGRKLNAQVFLGPTYYQRLRHMVDDKIHAR 1140

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL+  SD F V VC +C
Sbjct: 1141 ARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLLDVSDAFRVHVCEIC 1200

Query: 1106 GLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+    + K +   C  CKN   I+ + +PYA KLL QEL +MN+  R+
Sbjct: 1201 GLMTPIASLKKQQFECRPCKNKTRIAQIIIPYAAKLLFQELAAMNVATRM 1250


>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
            [Botryotinia fuckeliana]
          Length = 1260

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1255 (34%), Positives = 656/1255 (52%), Gaps = 158/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV Q LDSF+ FV T ++++V  N ++        S  D  I LR 
Sbjct: 24   DCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTLDQNNPPSSHDNPIALRR 83

Query: 83   KDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +++ G     +P+MT  DG ++ + P   RL ++TY++P+ + +               
Sbjct: 84   YEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQVAVERPVPLN 143

Query: 122  --------EYVQG-SHTEKTTMEKND--------------VVIGRIPIMLRSCRCVLYGK 158
                    E V G  H  +   E  D              V IG++P+ML+S  C+L G 
Sbjct: 144  ELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMMLKSEFCILKGL 203

Query: 159  DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK---------GNINA 209
            DE EL    ECP D GGYFII G+EKVL+ QE+ + N  I+   KK           I +
Sbjct: 204  DEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKPANSAVSYLAEIRS 261

Query: 210  SVTSSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            ++   +  + S  +   +KG          +   L      IPI +V +A+G+ SD++++
Sbjct: 262  ALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDIL 321

Query: 261  QMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AF 316
              +     D +   +L P IEE     I  +E AL+++    KR    S   D+  + A 
Sbjct: 322  NHICYDRNDTQMLEMLKPCIEEA--FVIQDREVALDFIG---KRGNGTSLTRDKRIKYAR 376

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L+
Sbjct: 377  DIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLL 436

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF +LF+ + ++V + +   +     +  F+L+  +   +IT GL+ +L+TGN+ D K
Sbjct: 437  AKLFRNLFRRLTTDVYRYLQRCVEN---NREFNLTLGVKSTTITNGLKYSLATGNWGDQK 493

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 494  KAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 553

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM +VT      P++       +E LE    E L  PN+  V  NG+ +G
Sbjct: 554  QACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLE--EYEPLRAPNATKVFVNGVWVG 611

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI-------AD 608
             HR P      ++ LRR+  I   VS+    + R   I +D GRVCRPL++       A+
Sbjct: 612  IHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSAN 671

Query: 609  KGISRIKEHHMKELLD----------------GVRSFDDFLREGLIEYLDVNEENNALIA 652
            KG   + + H++ L D                G   F   + +G++EYLD  EE   +I 
Sbjct: 672  KGNLVLNKDHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMIT 731

Query: 653  LYEGDAT------------PD-------------------TTHIEIEPFTILGVIAGLIP 681
            +   D              PD                    TH EI P  ILG+ A +IP
Sbjct: 732  MTPEDLDISRQLQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIP 791

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRN YQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 792  FPDHNQSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFREL 851

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+M YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 852  PAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKP 911

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+     +             LDDDG+ APG  +   D+ I K +P+      M   GQ
Sbjct: 912  YRSDTLKLKQGTYDK-------LDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEM---GQ 961

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
                +     +      E+ +VD+V + ++  G   +K  +R T+ P++GDKF+SRHGQK
Sbjct: 962  RTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQK 1021

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G    Q+D PF+  G+ PDLI+NPH  PSRMT+  +IE    K     G     + F
Sbjct: 1022 GTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPF 1081

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+S+S+ L  HG+   G +++Y G TG  + A +F+GP YYQ+L+HMV DK
Sbjct: 1082 TEV-----TVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDK 1136

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+I++GAS  + ERL   SD F V +
Sbjct: 1137 IHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHI 1196

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+     K+  G   C  CKN   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1197 CDICGLMTPIA-KINTGSFECRPCKNKTKISQIHIPYAAKLLFQELAAMNIATRM 1250


>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
            513.88]
          Length = 1231

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1226 (36%), Positives = 656/1226 (53%), Gaps = 129/1226 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEVDPVVVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + +        E+   +
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRERLVAD 143

Query: 136  KND--------VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
            ++D        V IG++PIML+S  C+L    E  L    ECP D GGYFII G+EKVL+
Sbjct: 144  RDDDDMAKEETVFIGKMPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLI 203

Query: 188  IQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQMEKG---------KM 231
             QE+ + N V +        T     I ++V   +  +   ++    KG          +
Sbjct: 204  AQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTI 263

Query: 232  YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECANLDIYTQ 288
               L      IPI+VV +A+G+ SD++++  +  D   +    +L P IEE     I  +
Sbjct: 264  RSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEE--GFVIQDR 321

Query: 289  EKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
            E AL+++    KR +  S  N +R  R A  I++  FL ++     +   K F++  M+ 
Sbjct: 322  EVALDFI---AKRGSSQSSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGYMVH 378

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
            R+++  L +  +DD+D+ G KRL+L+G L++ LF  LF  +  ++Q+ V   +     + 
Sbjct: 379  RLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVET---NR 435

Query: 407  RFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
               L+  I   ++T GL+  L+TGN+ + K+    + G++QVL+R ++  TL H+ R + 
Sbjct: 436  EIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNT 495

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM ++T      P+I     
Sbjct: 496  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 555

Query: 526  LGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVN 585
              +E LE    E    PN+  V  NG+ +G HR P    + M  LRR   I   VS+  +
Sbjct: 556  RNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRDPAHLVNTMLSLRRRNMISHEVSLIRD 613

Query: 586  EKQRCVYIASDGGRVCRPLVIADK-------GISRIKEHHMKEL---------LDG---- 625
             ++R   I +D GRVCRPL + D        G   + + H+++L         LD     
Sbjct: 614  IREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEHIRKLEQDKDLPPDLDPEDRR 673

Query: 626  --VRSFDDFLREGLIEYLDVNEENNALIA-----------LYEGDATPD----------- 661
                 +D  ++ G++EY+D  EE   +I            L  G A P+           
Sbjct: 674  ERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEELHDPNKRVR 733

Query: 662  ---------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                      TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 734  SILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQR 793

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            M+++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DR
Sbjct: 794  METMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDR 853

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R +  + YT   +    +  +R  +P R+     R             LD+DG+ AP
Sbjct: 854  GLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDK-------LDEDGIIAP 906

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +   D+ I K +PL      +   GQ    +     +      E  +VD+V L S  
Sbjct: 907  GVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAHTKLDVSTPLRSTENGIVDQV-LVSTS 962

Query: 893  NGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            N DL  +K  +R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+CPDLI+NPH  
Sbjct: 963  NDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHAI 1022

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDM 1010
            PSRMT+  +IE    K  VS  R   G A    +   D TV+SIS  L +HG+   G ++
Sbjct: 1023 PSRMTIAHLIECQLSK--VSSLRGFEGDA----TPFTDVTVDSISRLLREHGYQSRGFEV 1076

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG 1070
            +Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGLR G
Sbjct: 1077 MYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFG 1136

Query: 1071 EMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGDN 1128
            EMERDC+IA+GAS  + ERL   SDPF V +C  CGL+     KLK G+  C  C N   
Sbjct: 1137 EMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVA-KLKKGLFECRLCNNKHR 1195

Query: 1129 ISSMKLPYACKLLIQELQSMNIVPRL 1154
            IS + +PYA KLL QEL SMNI  R+
Sbjct: 1196 ISQVHIPYAAKLLFQELASMNIAARM 1221


>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1241 (34%), Positives = 656/1241 (52%), Gaps = 153/1241 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I+++V  + R++              +   
Sbjct: 77   DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRY 136

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V++         K  ++ +
Sbjct: 137  EITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMT--------KRVLKSD 188

Query: 138  D-----------------------VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
            D                       V +G++PIMLRS  C+L    E E   L ECP D G
Sbjct: 189  DNAGNEHELEWIEEEIKDEEPLTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMG 248

Query: 175  GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
            GYF+I G+EKVL+ QE+ + N  I+   KK   +     A + S+ E  +   +I   + 
Sbjct: 249  GYFVINGSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--RGSRLISSMQI 304

Query: 230  KMY-------------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALL 273
            K+Y               L    + IPI++V +A+G+  D ++++ +     D +   +L
Sbjct: 305  KLYGREEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEML 364

Query: 274  LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNN 333
             P +EE     I  +E AL+++    +R   G     R   A  IL+   L N+      
Sbjct: 365  KPCVEE--GFVIQEREVALDFIG---RRGALGIKREKRIQYAKDILQKELLPNITQDEGF 419

Query: 334  FRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK 393
               K F++  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++  
Sbjct: 420  ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYN 479

Query: 394  TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLS 452
             +   +        F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R +
Sbjct: 480  YMQRCVEN---DKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYT 536

Query: 453  FIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 512
            +  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++ 
Sbjct: 537  YSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV 596

Query: 513  DEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR 572
                 P++      G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR
Sbjct: 597  GTPSEPILYFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRR 654

Query: 573  AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL-- 623
             G I   VS+  + +++   I +D GRV RPL I D       KG  ++++ H+ +LL  
Sbjct: 655  RGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNA 714

Query: 624  --------------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---------ATP 660
                          +G   +   + +G++EY+D  EE   +IA+   D         AT 
Sbjct: 715  EYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQ 774

Query: 661  DTT--------------------------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
              +                          H EI P  ILGV A +IP+P HNQSPRNTYQ
Sbjct: 775  QKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQ 834

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQAMG    N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  Y
Sbjct: 835  SAMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACY 894

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVV 814
            SGY+ ED+++MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ 
Sbjct: 895  SGYNQEDSMIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPLRS----DTLRLK 950

Query: 815  HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK 874
            H +      LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +
Sbjct: 951  HGT---YEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLR 1006

Query: 875  GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 934
                E+ +VD+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED P
Sbjct: 1007 S--TESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMP 1064

Query: 935  FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 994
            F+ +GI PDLI+NPH  PSRMTV  +IE L  K     G     S F +      T E++
Sbjct: 1065 FTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAV 1119

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
            S+ L +HG+   G +++Y G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LT
Sbjct: 1120 SKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLT 1179

Query: 1055 RQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NH 1113
            RQP EGR+R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC VCGL+    N 
Sbjct: 1180 RQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANL 1239

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            K     C +CKN  NI  + +PYA KLL QEL +MNI PRL
Sbjct: 1240 KKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1280


>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
            hordei]
          Length = 1241

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1215 (34%), Positives = 651/1215 (53%), Gaps = 120/1215 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---------RANDRIVSGIDPS--I 78
            D + ++  F + +GLV+  LDSFN F++  I+++V         +++       D +   
Sbjct: 56   DCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDKTRRY 115

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE------- 130
             + F  + + +P+MT  DG S +L P   R  ++TY+A + V++       +E       
Sbjct: 116  EIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSEDEVDLNG 175

Query: 131  ---------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
                     KT +E+  + IG++PIML+S  C L G D+     L ECP D GGYF+I G
Sbjct: 176  DPAWIPEYGKTDVEEEQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYFVING 235

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGK---- 230
            +EKVL+ QE+++ N V + +            I ++V    +T+ +  V    + K    
Sbjct: 236  SEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEKTA 295

Query: 231  ---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECANLD 284
               +   L      IPI++V +A+G+  D+EV+Q +  D   +    +L P IEE     
Sbjct: 296  NNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEA--FV 353

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  ++ AL+++ G+ + +T G     R   A  IL+   L ++     +   K ++   M
Sbjct: 354  IQDRDVALDFI-GR-RGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYM 411

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L++  +DD+D+ G KR++L G L++ LF  LF+ +  +V + +   + +   
Sbjct: 412  IHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEE--- 468

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F +   +   +IT GL  +L+TGN+ D K+    + G++QVL R +F  TL H+ R 
Sbjct: 469  HREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRT 528

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  VT      P++   
Sbjct: 529  NTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFL 588

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
               G   L+ L   +L +  +  +  NG+ +G H  P    D +R LRR   I   VSV 
Sbjct: 589  EEFG---LDSLVDMQLAHAKATKIFVNGVWMGTHDDPAQLVDTLRDLRRKDDISHEVSVV 645

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKG--ISRIKEHHMKELLDGVRS------FDDFLRE 635
             + ++R + I +D  RV RP+ I +       IK+ H++ +   +        +   ++E
Sbjct: 646  RDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKRHVEMIGQTIPQTGEEFRWTHLIQE 705

Query: 636  GLIEYLDVNEENNALIALYEGD------------------------------ATPDT-TH 664
            G+IEYLD  EE + LI +   D                                PDT TH
Sbjct: 706  GVIEYLDAEEEESVLICMSTTDLEQSREYKARNGQINLNSADPSARLKSVHTIAPDTWTH 765

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  +LG+ A ++P+P HNQSPRN YQ AMGKQA+G    N + R DS+ ++L YPQ
Sbjct: 766  CEIHPAMVLGICASIVPFPDHNQSPRNVYQSAMGKQAIGIPISNFISRADSMNHILYYPQ 825

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TTR++E + + +L AGQNA VA+M YSGY+ ED+++MN+SS+DRG  R +  + Y 
Sbjct: 826  KPLGTTRSMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYYRGYM 885

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            A  +K      +   +P R      RM+   +  +     D DGL APG  +  +DV I 
Sbjct: 886  AEEKKVGVMQLEEFEKPHRDT--TIRMKHGTYDKI-----DADGLCAPGTRVSGDDVIIG 938

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPD-----GETCVVDRVALCSDKNGDLCIK 899
            K +PL        P    +   RS   T K         E  ++D+V L ++ +G+  +K
Sbjct: 939  KTAPL--------PPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVK 990

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
              +R++R P+ GDKF+SRHGQKG  G   +QED PFS  G+ PD+I+NPH  PSRMT+G 
Sbjct: 991  VRVRNSRVPQTGDKFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPHAIPSRMTIGH 1050

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            ++E L  K     G+    + F E      TVE++S  L   G+   G +++Y G TG  
Sbjct: 1051 LVECLLSKVAALSGQEGDATPFTEL-----TVEAVSSILRGLGYQSRGLEVMYHGHTGRK 1105

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            LQA +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R GGLR GEMERDC+IA
Sbjct: 1106 LQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIA 1165

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACK 1139
            +G +  + ER+  +SDP+ + VC +CGL    N K     C +C+N   IS + +PYA K
Sbjct: 1166 HGIAGFLKERMFDASDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAK 1225

Query: 1140 LLIQELQSMNIVPRL 1154
            LL+QEL S+N+  RL
Sbjct: 1226 LLMQELMSVNVALRL 1240


>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
          Length = 1275

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1275 (34%), Positives = 667/1275 (52%), Gaps = 179/1275 (14%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF  F+ + I+++V  + +++             ++   
Sbjct: 20   DCWTVISSFFEEKGLVSQQLDSFEEFIESSIQELVLEDKKLILDQPAQHITEDDDVNRRY 79

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE--------------- 122
             + F D+ + +PS T  DG +  L P   RL ++TY+AP+ V ++               
Sbjct: 80   EITFGDIFLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLYVEMKKMVKESIDDDDVVTT 139

Query: 123  ----YVQGSHT-----------------------------------EKTTMEKNDVVIGR 143
                Y +G  T                                    ++  E   + IG+
Sbjct: 140  QVVWYREGEITRYRNGEIEQDEMVIMPPNFDDDSDDIIEERHGIKVHRSGAESQTIFIGK 199

Query: 144  IPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK 203
            +PIML+S  C LYG  E EL  + ECP D GGYFII G+EKVL+ QE+ + N  I+   K
Sbjct: 200  VPIMLKSKFCSLYGLSEDELYEIRECPFDMGGYFIINGSEKVLIAQERSAAN--IVQVFK 257

Query: 204  KGNIN-----ASVTSSTET---VKSKTVIQMEKG------------KMYLLLNQFVKKIP 243
            K   +     A + S+ E    + S   +++ +G             +   L      IP
Sbjct: 258  KSPPSPVSHIAELRSALEKGSRLISSIQVKLARGGASNFKSGGVGRSIKATLPYIKADIP 317

Query: 244  IMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
            I++V +A+G+  D +++Q +     D +   +L P IEE     I +QE AL+Y+ G+ +
Sbjct: 318  IVIVFRALGVIEDGDILQHICYDENDWQMLEMLKPCIEE--GFLIQSQEVALDYI-GR-R 373

Query: 301  RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
             ++ G     R   A  IL+  FL ++   +     K +++  ++ R++   L +   DD
Sbjct: 374  GNSIGIKKERRIQYAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERKEPDD 433

Query: 361  KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            +D+ G KRL+L+G L++ LF  LF+ +  ++ + +   +    R   F++   +  ++IT
Sbjct: 434  RDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCI---ERGDDFNIVSAVKSNTIT 490

Query: 421  VGLERTLSTGNFDVKRFKM-HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             GL+ +L+TGN+  ++  M  R G++QVL R ++  TL H+ R +    +  K++ PR L
Sbjct: 491  SGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQL 550

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WG++CP +TPEG+ACGLVKNL+LM   +      P+  L    G+E L     +E 
Sbjct: 551  HNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSASEPITYLLEEWGLEPLSDYEPQE- 609

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
             + N+  V  NG  +G HR P    + MR+LRR+G I   VS+  + ++R   I +D GR
Sbjct: 610  -HKNATRVFLNGNWVGTHRDPAMLVETMRQLRRSGTISPEVSLIRDIREREFKIFTDAGR 668

Query: 600  VCRPLVIAD-------KGISRIKEHHMKELLD-----------------------GVRSF 629
            + RPL I D       KG  ++ + H +++LD                        V  +
Sbjct: 669  IYRPLFIVDNDPDSEHKGELKLTKEHCRKILDREVEEIVQDEEFDDEGQPLGPVQRVFGW 728

Query: 630  DDFLREGLIEYLDVNEENNALIAL---------------YEGDATP-----------DTT 663
            D  L  G+IEYLD  EE   LIA+                E D  P             T
Sbjct: 729  DSLLSNGIIEYLDAEEEETVLIAMSPEDLISSASAEVQKAERDLDPAKRIKNVVKAHSFT 788

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YP
Sbjct: 789  HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYP 848

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            Q+PL  T+++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y
Sbjct: 849  QKPLAKTQSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY 908

Query: 784  TAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYI 843
                ++   S  +   +P R+     +             LDDDGL APG  +  +D+ I
Sbjct: 909  MDQERRSGISVVEEFEKPMRSSTLGFKQGTYEK-------LDDDGLIAPGVRVSGDDIII 961

Query: 844  NKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVALCSDKNGDLCIKFL 901
             K  P+      +   GQ  ++Y + R     P    E+ +VD+V L ++  G    K  
Sbjct: 962  GKTVPIPPDTEEL---GQR-TKYHTKRDA-STPLRTTESGIVDQVLLTTNAEGLKFAKVR 1016

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +GI PDLI+NPH  PSRMTV  +I
Sbjct: 1017 MRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLI 1076

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            E L  K  V+  R + G A    +   D TV+++S+ L ++G+   G +++Y+G TG  L
Sbjct: 1077 ECLLSK--VASMRGYEGDA----TPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKKL 1130

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
             A +F GP YYQ+L+HMV DK+HAR  GP   LTRQP EGRAR+GGLR GEMERDC+IA+
Sbjct: 1131 MAQVFFGPTYYQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERDCMIAH 1190

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKNGDNISSMKLPYACK 1139
            GA+  + ERLM SSD F V +C +CGL+    N K     C +CKN  NI  + +PYA K
Sbjct: 1191 GAAGFLKERLMDSSDAFRVHICGICGLMSVIANLKKNQFECKSCKNKTNIYQIHIPYAAK 1250

Query: 1140 LLIQELQSMNIVPRL 1154
            LL QEL SMNI PRL
Sbjct: 1251 LLFQELMSMNIAPRL 1265


>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1258

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1246 (34%), Positives = 657/1246 (52%), Gaps = 145/1246 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIFL 80
            D + ++  F + +GLV Q +DS++ FV   +  IV     I          S  DP I  
Sbjct: 26   DCWTVISSFFEEKGLVAQQIDSYDEFVKNTLPNIVEHMGAITMDHTPPIDESDPDPIIKK 85

Query: 81   R----FKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK----- 131
            R    F +V++G+PS+T  GV+  + PH  RL ++TYAA ++ ++        E+     
Sbjct: 86   RYEVNFGEVKMGRPSLTDGGVTRDVFPHEARLRNLTYAAAMMSDMSTKTSVARERPIAPS 145

Query: 132  -------------------TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLD 172
                               +  +K  V  GR+P+ML+S  C L    + +L    ECP D
Sbjct: 146  GDMDEDETTGATELVWEVDSQTDKEQVFFGRLPVMLKSYVCGLRNLTDEQLYAHSECPYD 205

Query: 173  PGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK------GNINASVTSSTETVKSKTVIQM 226
             GGYF+I G+EKVL+ QE+ + N V +   ++        I ++V   +  + S T+   
Sbjct: 206  QGGYFVINGSEKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLSSMTLKLY 265

Query: 227  EKGKM---------YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---L 274
            EK ++         Y  L      +PI +V +A+G+ SD++++  +  D   + L+    
Sbjct: 266  EKPQLWKEGQGCCLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDNKLMEAIR 325

Query: 275  PSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
            PSIEE  ++ I  +  AL+++  +    + G    +R   A  I++  FL ++     + 
Sbjct: 326  PSIEE--SVLIQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQTEGSE 383

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K F++  M+ R+++  L +   DD+D+ G KRL+L+G L++ LF  LF  +  +V   
Sbjct: 384  TKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVYN- 442

Query: 395  VDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLS 452
                L K   + R F L   + + +I+ GL+ +L+TGN+ D K+    + G++QVL R +
Sbjct: 443  ---YLKKCVEAGRPFSLQSAVKQGTISNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYT 499

Query: 453  FIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 512
            +  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM HVT 
Sbjct: 500  YSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCHVTV 559

Query: 513  DEEEGPLISLCYCLGVEDLELLSGEELH-NPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
              +  P+      +   ++ELL   E   +P++  +  NG+ +G HR P     V++KLR
Sbjct: 560  GSDVTPIQDF---MTQRNMELLEEYEPSVSPHATKIFVNGVWVGVHRDPTQLVSVVKKLR 616

Query: 572  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI-------ADKGISRIKEHHMKELLD 624
            R G +   +S+  + + R   I +D GRVCRPL I       A+KG   +   H+ +L +
Sbjct: 617  RDGTLSPEMSLIRDVRDREFKIFTDAGRVCRPLFIIDDNPTSANKGNLVLSREHIDKLEE 676

Query: 625  GVR----------------SFDDFLREGLIEYLDVNEENNALIALYEGD----------- 657
              +                 +   L  G++EY+D  EE +A+I +   D           
Sbjct: 677  DQQIDVSGLSDDERDERRYGWKGLLTSGVVEYMDAEEEESAMIVMTPDDLRAHHRARQGI 736

Query: 658  ------------------------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
                                    +    TH EI P  ILG+ A +IP+P HNQSPRNTY
Sbjct: 737  VDEEDEETRLNRDPHERVVPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQSPRNTY 796

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            Q AMGKQAMG    N   RMD+++ +L YPQ+PL TTR++E + + +L AGQNA VA+  
Sbjct: 797  QSAMGKQAMGVCLTNYELRMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAIAC 856

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            YSGY+ ED+++MN+SS+DRG  R +  + YT   +K   +  ++  +P R+    + M++
Sbjct: 857  YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRS----DTMRL 912

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
             H +      LDDDG+ APG  +   D+ I K +P+      +   GQ    +     + 
Sbjct: 913  KHGT---YDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEEL---GQRTKMHIKRDVST 966

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
                 E  +VD+V L ++ +G   +K   R T+ P++GDKF+SRHGQKG  G   + ED 
Sbjct: 967  PLRSTENGIVDQVLLTTNSDGLKFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRHEDM 1026

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            PF+  G+ PDLI+NPH  PSRMT+  +IE L  K G   G+    + F +      TV  
Sbjct: 1027 PFTREGLTPDLIINPHAIPSRMTIAHLIECLLSKVGALRGQEGDATPFTDV-----TVTQ 1081

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            +S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +L
Sbjct: 1082 VSSLLREHGYQSRGFEIMYNGHTGKKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQIL 1141

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG---- 1109
            TRQP EGRAR+GGLR GEMERDC+I++GAS  + ERL   SD + V +C +CGL+     
Sbjct: 1142 TRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAYRVHICEICGLMTPIAC 1201

Query: 1110 -YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               N K     C  CKN   I+ + +PYA KLL QEL SMNI  R+
Sbjct: 1202 PRSNLKRNQFECRPCKNKTKIAQIYIPYAAKLLFQELASMNIASRM 1247


>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1189

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1176 (35%), Positives = 645/1176 (54%), Gaps = 92/1176 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF---------- 79
            D ++++  F    GLV Q ++SFN F+   +++I+ ++  I     P+            
Sbjct: 60   DTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPAIEITPQPNYRPEEEEENSVL 119

Query: 80   --LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
              L+F  + + +PS+   DGV + + P   RL ++TYA+ + ++IE     + E   ++ 
Sbjct: 120  YRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQQTFLNEEGNLVQT 179

Query: 137  NDVV-----IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            +  V     + RIP+ML+S  C   G  E +L+ +GEC  D GGYF++ G E+VL+ QE+
Sbjct: 180  DSTVYPRVPLCRIPMMLKSAYCWTKGLTEHDLSDIGECVFDQGGYFVVNGGERVLIAQER 239

Query: 192  LSKNRVIIDTDKKGNINA-----SVTSSTETVKSKTVI----QMEKGKMYLLLNQFVKKI 242
            ++ N V +   K    +A     S    ++ V S +++    Q+ K KM   L      +
Sbjct: 240  MANNFVYVFNKKNQKYSAVAQLRSQPDFSQGVTSFSIMILNSQLAKNKMLAALPYVKGDV 299

Query: 243  PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
            P+ ++ +A+G  SD++++Q +     D +  +L+  ++EEC+  +  +QE+ L+Y+ GK 
Sbjct: 300  PVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSTLEECS--EYTSQEQCLDYI-GK- 355

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
            +  T G+P   R   A  +LR  FL +V     +   KCFYV  M+ R++   L +   D
Sbjct: 356  RGPTVGAPLEARIQYAKDLLRRHFLPHVGTEVGSESKKCFYVGYMIHRLLLNQLGRINED 415

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS- 418
            D+++ G KRL+L+G L++  F  LF+ +  +V+K   ++ ++      FD++  I   S 
Sbjct: 416  DREHFGKKRLDLAGALMASSFGALFRKLAKDVKK---LLQNQIDSGRSFDVAGAIKSCSQ 472

Query: 419  ITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+  L TGN+   K   + R G++QVL RL+F   L H+ R++    +  K++ PR
Sbjct: 473  ITQGLQYQLLTGNWGRDKEGNVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPR 532

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+A GLVKNLALM +++       ++      G++ L+ +S  
Sbjct: 533  QLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSMTSTILDFLLEFGMDSLDEISPV 592

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             + +     +  NG  +G   +P    +++ +LRR G I    S+  +     + I +D 
Sbjct: 593  LIKD--RVKIFLNGTWIGVFNQPDALVNLLLELRRKGNISSETSIVRDILSNEIKIFTDS 650

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            GR  RPL I +     I + H   + +   ++   L  G++EY+D  EE   +IA++  D
Sbjct: 651  GRSMRPLYIVENNRLLITKRHALMIENNQLNWSGLLESGVVEYIDCEEEEICMIAMFPDD 710

Query: 658  ATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
               +       TH EI P  ILGV A +IP+P  NQSPRNTYQ AMGKQAMG  + N   
Sbjct: 711  LINNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVYSTNYNL 770

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+L ++L YPQ+PL+ TR++E + + +L AG N+ VA+M Y+GY+ ED+++MN+SS+D
Sbjct: 771  RMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSID 830

Query: 772  RGFGRCIVVKKYTAINQKYANSTS-DRILRPDRTGPGAERMQVVHHSNLLLLI------L 824
            RG  R +  + Y++  +KY  ST  +   +P  T            SN L L       L
Sbjct: 831  RGLFRSVFNRTYSS-EEKYLGSTVIESFTKPTAT------------SNFLNLKRGDYSKL 877

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSI-MSPTGQTDSRYRSARQTYKGPDGETCVV 883
            D+DGL  PG    PN+     E  L    S  + P                    E  VV
Sbjct: 878  DNDGLIEPGSRSDPNNPNYPAEMNLRMDCSCCLRPN-------------------ENGVV 918

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D V L  +  G    K  +R  R P++GDKF+SRHGQKG  G   + ED PF+  GI PD
Sbjct: 919  DNVLLTVNNKGCKFTKVKVRSVRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCEGIVPD 978

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +IMNPH  PSRMT+G +IE L GK G   G     + F +      T+E IS  L K  +
Sbjct: 979  IIMNPHAVPSRMTIGHLIECLLGKVGALVGMEGDATPFSKM-----TLEQISSRLFKCHY 1033

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
            S  G +  ++G TG  + + IF+GP YYQ+LKHMV DK+HAR  GP  MLTRQPTEGR+R
Sbjct: 1034 SKYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSR 1093

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC+I++GA+ ++ ERL   SD + V VC +CGLL   N    +  C+ C
Sbjct: 1094 DGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNLCGLLSIANLNNSSFQCTAC 1153

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
             N   IS + +PYACKLL+QEL +M I P+L L EA
Sbjct: 1154 DNKTQISQVTIPYACKLLLQELMAMAIYPKLVLTEA 1189


>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
 gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
          Length = 1262

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1251 (33%), Positives = 662/1251 (52%), Gaps = 151/1251 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             +P I 
Sbjct: 26   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNPDEEDNPIIK 85

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY----------- 123
                ++F  V + +P+ T  DG + +L PH  RL ++TY+  +L +IE            
Sbjct: 86   RRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRVMVAREGRDP 145

Query: 124  -------VQGSHT--------EKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAEL 163
                   ++G +T        E+  M  +D     V IG++P+MLRS  C L  + +A+L
Sbjct: 146  EADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELCHLRAQSDADL 205

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTET 217
              L ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G       I ++V   T  
Sbjct: 206  FALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRL 265

Query: 218  VKSKTVIQMEK-----GK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV--- 263
            + S  +   E      GK       Y  L      +P+ +V +A+G+ SD+E++  +   
Sbjct: 266  ISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVFD 325

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
              D +   LL PSIEE +   +  +E AL+++    KR       + R   A  I++  F
Sbjct: 326  RNDTQTLELLKPSIEEGSV--VQDRETALDFI---AKRGANSGTRDRRLKFARDIMQREF 380

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  L
Sbjct: 381  LPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRIL 440

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRK 442
            F  +  +V K +   +     +  F++   +   +IT GL+ +L+TGN+ D K+    + 
Sbjct: 441  FLKLTKDVYKYLQRCVEN---NQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAASAKA 497

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            NL+LM +V+   +  P++       ++ LE    ++  +P++  V  NG+ +G H   + 
Sbjct: 558  NLSLMCYVSVGSDATPIVDFMTQRNMQLLE--EYDQNQSPDATKVFVNGVWVGVHSNAQQ 615

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM--- 619
               V+++LRR G +   +S+  + + R   I +D GRV RPL + +  + +   +H+   
Sbjct: 616  LVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDVRKPNRNHLIFT 675

Query: 620  KELLDGVRS----------------------FDDFLREGLIEYLDVNEENNALIALYEGD 657
            KE+ + ++S                      +   +++G++EYLD  EE  A+I     D
Sbjct: 676  KEISNKLKSEQMEASQRQGWSEEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPED 735

Query: 658  ----------------------------ATPDT-----THIEIEPFTILGVIAGLIPYPH 684
                                          PD      TH EI P  ILG+ A +IP+P 
Sbjct: 736  LEEWREMKMGLPMTDHSLEGSQRLRRLKPLPDPRIHSYTHCEIHPAMILGICASIIPFPD 795

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L AG
Sbjct: 796  HNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAG 855

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA+ +Y GY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R 
Sbjct: 856  QNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA 915

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 R++   +       LDDDG+ APG  +  +D+ I K +P+ T  + +   GQ  +
Sbjct: 916  --DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIATDAAEL---GQKTT 965

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
             +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  
Sbjct: 966  LHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTI 1025

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PFS  G+ PDLI+NPH  PSRMT+  ++E L  K G   G+    + F + 
Sbjct: 1026 GITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDV 1085

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TV+ +S+ L   G+   G +++Y+G TG  ++  IF+GP YYQ+L+HMV DK+HA
Sbjct: 1086 -----TVDQVSQLLENAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHA 1140

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC +
Sbjct: 1141 RARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDI 1200

Query: 1105 CGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CGL+    N K     C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1201 CGLMSPIANLKKNLYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1248

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1249 (34%), Positives = 665/1249 (53%), Gaps = 151/1249 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDSF+ F +T +++IV     IV           G++  I 
Sbjct: 17   DCWSVIHSFFDSKGLVSQQLDSFDEFASTTMQEIVDETPAIVIDQNVAADDDDGLNMPIV 76

Query: 80   LRFKDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE----------- 122
             R   + +G     Q +MT  DG +  + PH  RL ++TY++P+ +N+            
Sbjct: 77   KRRYIIELGVLTISQAAMTEGDGSTRAMYPHEARLRNLTYSSPMFLNLTKRMQLARERSA 136

Query: 123  ---------YVQGSHTEKTTME-------------KNDVVIGRIPIMLRSCRCVLYGKDE 160
                     ++   + +  T++             K+ V IG++PIML+S  C L  + E
Sbjct: 137  GGQMGENGVWIDPPNWDGVTVDTIWEEDPDNPPETKDQVFIGKLPIMLKSKICALRNRSE 196

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-------INASVTS 213
             EL    ECP D GGYFII G+EKVL+ QE+ + N V +   KKG        + +++  
Sbjct: 197  QELYAQQECPFDQGGYFIINGSEKVLIAQERSAANIVQV-FKKKGTPTPVVAELRSAIEK 255

Query: 214  STETVKSKTVIQMEK-------GKMYLLLNQFVK-KIPIMVVMKAMGMESDQEVVQMV-- 263
             T  + S  V  + +       GK   +   ++K  IPI +V +A+G+ SD++++  +  
Sbjct: 256  GTRLISSMQVKLVNQAAHSNATGKTIKVSVPYIKVDIPIGIVFRALGIVSDEDILNHIVD 315

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
             +D +   +L P +EE     I  ++ AL+++    KR         R   A  I++  F
Sbjct: 316  RKDTQMLEMLKPCLEEA--FVIQDRDGALDFIG---KRGNQQGVKERRIRYAREIMQKEF 370

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++     +   K F++  M+ R+++  L + + DD+D+ G KRL+L+G L++ +F   
Sbjct: 371  LPHISQEEGSETRKAFFLGYMVNRLLQCALGRTSEDDRDHFGKKRLDLAGPLMAQVFRLK 430

Query: 384  FKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHR 441
            F+ ++ E+++     L +   + R F+++  +  + IT GL   L+TGN+ D K+    +
Sbjct: 431  FQQLVKEMKQ----YLHRCVETGREFNITLAVKTNIITSGLRYCLATGNWGDQKKASQSK 486

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLV
Sbjct: 487  AGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 546

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNL+LM +VT      PLI      G++ LE    + + NP +  V  NG  +G HR   
Sbjct: 547  KNLSLMCYVTVGTPGFPLIDFMRQRGMDLLE--EYDPVINPGATKVFLNGTWVGVHRNAG 604

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD--------KGISR 613
              AD +R LRR G +   V++  + ++R + + +D GRVCRPL + D        KG   
Sbjct: 605  HLADTLRSLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNRTEAPNNKGSLV 664

Query: 614  IKEHHMKEL---------LDGVRS---------FDDFLREGLIEYLDVNEENNALIALYE 655
            + + H+ +L         L+GV           +   +  G++EYLD  EE  A+I++  
Sbjct: 665  LDQTHLAKLAEDQDMLQNLEGVSEEEREKHIFGWKGLVDGGVVEYLDAEEEETAMISMTP 724

Query: 656  GD---------ATPD--------------------TTHIEIEPFTILGVIAGLIPYPHHN 686
             D           P+                     TH EI P  ILG+ A +IP+P HN
Sbjct: 725  EDLEEHKAMRAGMPEEARDDPHRRIKQPPNPFVRTWTHCEIHPAMILGICASIIPFPDHN 784

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + +  L AGQN
Sbjct: 785  QSPRNTYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSMEFLRFRDLPAGQN 844

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y    ++   S  ++  +P R   
Sbjct: 845  AIVAISCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQEKRVGMSVVEQFEKPVRAD- 903

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
               RM+   +  L     D+DG+ +PG  +  +DV I K +P+      +   GQ    +
Sbjct: 904  -TMRMKQGTYDKL-----DEDGIISPGSRVSGDDVIIGKTAPMPPDAEEL---GQRTKLH 954

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
                 +      E  +VD+V L ++  G   +K   R T+ P++GDKF+SRHGQKG  G 
Sbjct: 955  VKRDVSTPLRSTENGIVDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTIGI 1014

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K G   G+    + F +   
Sbjct: 1015 TYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTDV-- 1072

Query: 987  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
               TV SIS+ L  HGF   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR 
Sbjct: 1073 ---TVTSISQILADHGFQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARA 1129

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL+  SD F V +C +CG
Sbjct: 1130 RGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICEICG 1189

Query: 1107 LLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            L+    + K +   C  C+N   I+ + +PYA KLL QEL +MN+  R+
Sbjct: 1190 LMTPIASIKKQQFECRPCRNKTKIAQVIIPYAAKLLFQELAAMNVATRM 1238


>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
 gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
          Length = 1207

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1183 (36%), Positives = 645/1183 (54%), Gaps = 88/1183 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF---------- 79
            D ++++  F    GLV Q ++SFN FV   +++ +  +  I     P             
Sbjct: 60   DSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYHPEDERENNIV 119

Query: 80   --LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTT 133
              L+F  + + +P +  + GV + + P   RL ++TY++ I V+IE   Y++  +T   T
Sbjct: 120  YKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNLTYSSQIYVDIEQKTYLRDENTNTET 179

Query: 134  MEKN----DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            +++      + +GRIP+ML+S  C      E +LA +GECP D GGYFI+ G E+VL+ Q
Sbjct: 180  LQETITYPRIELGRIPMMLKSAYCWTKDISEDDLADVGECPFDEGGYFIVNGGERVLIGQ 239

Query: 190  EQLSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKK---- 241
            E+++ N + I   K   K ++ A + S  E  +  T    M K    +  N+F       
Sbjct: 240  ERMANNYIYIFKKKQPSKYSLVAEIRSQPEFSQGTTPFSIMMKSTSGIAGNRFKSHGQLV 299

Query: 242  ---------IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQE 289
                     IPI ++ +A+G  +D++++Q +     D +   L+ PS+EE A  D  TQE
Sbjct: 300  GSIPYLKSDIPIAILFRALGCVADRDILQRIVYDFEDKQMLTLMRPSLEETA--DYSTQE 357

Query: 290  KALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMV 349
              L+++ GK +  T G+P   R   A  +LR  FL +V         KC+++  M+ R++
Sbjct: 358  MCLDFI-GK-RGPTVGAPLETRVQYAKDLLRQHFLPHVGTEPGCESRKCYFLGYMVHRLL 415

Query: 350  EAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-F 408
             + L +   DD+D+ G KRL+L+G L++  F  LF+ M+ + ++    IL +   S R F
Sbjct: 416  LSRLGRIPEDDRDHFGKKRLDLAGSLMASSFGTLFRKMVKDTKR----ILQQQIDSGREF 471

Query: 409  DLSQFIVRDS-ITVGLERTLSTGNFDVKR-FKMHRKGMTQVLARLSFIGTLGHMTRVSPQ 466
            D++  +   + IT GL+  L TGN+   R  K+ R G++QVL RL+F   L H+ R++  
Sbjct: 472  DVAGAVRSATQITHGLQYQLLTGNWGRDRDGKVVRTGVSQVLNRLTFASYLSHLRRLNTP 531

Query: 467  FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL 526
              +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM  ++       +       
Sbjct: 532  LGREGKIAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCFISVGTAASTINEFLCEW 591

Query: 527  GVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE 586
            G++ L+ +  E + +     +  NG  +G     +     + +LRR G I    S+  + 
Sbjct: 592  GMDSLDEVPPEVIKD--RIKIFINGTWVGCFDEAESLVKTLLELRRRGNIAAETSIVCDI 649

Query: 587  KQRCVYIASDGGRVCRPLVIADKGIS-RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNE 645
              + V I +D GR  RPL+I + G +  I +  +  L +   ++D  +  G++EY+D  E
Sbjct: 650  VSQEVKIFTDAGRAMRPLLIVENGNTLAITKTDIARLDNNECNWDGLIESGVVEYVDCEE 709

Query: 646  ENNALIALYEGDATPDTT------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
            E   +IA++  D   ++T      H EI P  ILGV A +IP+P  NQSPRNTYQ AMGK
Sbjct: 710  EEMCMIAMFAEDLKNNSTYCNTYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGK 769

Query: 700  QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
            QAMG  A N   RMD L +LL YPQ+PL+ TR++E + + +L AG NA VA+M Y+GY+ 
Sbjct: 770  QAMGVYATNFNLRMDPLSHLLYYPQKPLVCTRSMEFLRFRELPAGINAIVAIMCYTGYNQ 829

Query: 760  EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD-RTGPGAERMQVVHHSN 818
            ED+++MN+SS+DRG  R    + Y +  +   ++  +R  RP+  T  G +R        
Sbjct: 830  EDSLIMNQSSIDRGLFRSAFNRTYVSEEKHVGSTVVERFERPNPATCVGLKRGDYTK--- 886

Query: 819  LLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG--P 876
                 LD DGL  PG  +  +DV I + S               D    + RQ       
Sbjct: 887  -----LDADGLVQPGSRVLGDDVIIGRTSAC------------NDEEDENLRQDCSCCLR 929

Query: 877  DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              E  VVD V + S+  G    K  +R  R P++GDKF+SRHGQKG  G   + ED PF+
Sbjct: 930  TSENGVVDTVLISSNAKGSRFAKVKVRSIRVPQIGDKFASRHGQKGTIGMTYRTEDLPFT 989

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              GI PD+IMNPH  PSRMT+G ++E L GK G  CG     + F +      TV+ ++E
Sbjct: 990  CEGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGACCGMEGDATPFSKL-----TVQHVAE 1044

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L + G+  +G + ++ G TG  + + IF+GP YYQ+LKHMV DK+HAR  GP  MLTRQ
Sbjct: 1045 RLFECGYGKHGNEALHCGFTGEMIVSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQ 1104

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            PTEGR+R+GGLR GEMERDC+I++GA+ ++ ERL   SD F + VC  CGL    +    
Sbjct: 1105 PTEGRSRDGGLRFGEMERDCMISHGAAKMLKERLFDQSDAFRIHVCDRCGLCCVADLNRN 1164

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
               C+ C N  NIS + +PYACKLLIQEL +M I P+L L  A
Sbjct: 1165 NFECTACDNKTNISQVTIPYACKLLIQELMAMAIYPKLLLTPA 1207


>gi|432329280|ref|YP_007247424.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum sp.
            MAR08-339]
 gi|432135989|gb|AGB05258.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum sp.
            MAR08-339]
          Length = 1201

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1168 (36%), Positives = 638/1168 (54%), Gaps = 128/1168 (10%)

Query: 73   GIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
            GI P+I       +IG+P +    G + ++ P   RL DM+Y AP+ + I  V+   +  
Sbjct: 78   GITPTI-------KIGKPEIKEATGATVQITPMEARLRDMSYLAPLYLQIMVVECDDSGC 130

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLY-----------GKDEA--------ELARLGECPLD 172
               E   V IG  P+M++S  C L+            KD++        +L  +GE P D
Sbjct: 131  LEKEPEMVKIGDFPVMVKSKICTLHEDNIDDYLDSISKDKSILNWPYRKKLEYVGEDPDD 190

Query: 173  PGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI---NASVTSSTETVKSKTVIQMEK- 228
            PGGYFII G+E+VL+  E L+ NRV+++ +++ N     A V S     ++ T+++ +  
Sbjct: 191  PGGYFIIGGSERVLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYRALTIMEKKND 250

Query: 229  GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY-- 286
            G + + +      IP++++MKA+G+E D+++ + +  D + S + L +IEE  N  +Y  
Sbjct: 251  GILVVSVPAVAGTIPLVILMKALGLERDEDIYKAIVSDEKMSVIALANIEEVENDKLYPP 310

Query: 287  ----TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
                TQ+ A+EYLE   KR   G     RE +   IL    L ++     +   K +Y+ 
Sbjct: 311  NGIRTQKDAIEYLE---KRFAAGQAKEYREKKISQILDSSLLPHLGTDKEDRIKKAYYLG 367

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M +R++E  L     DDKD++ NKR++LSG L+  LF   F+ ++ +++  ++   ++ 
Sbjct: 368  RMAKRILELHLGLRKEDDKDHLANKRIKLSGDLLEDLFRMAFEALMKDLKYQLERTYNR- 426

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
             +  R  +S  I +D +T  +   +STGN+        R G++Q+L R S + TL H+ R
Sbjct: 427  KKGIRIRVS--IRQDVLTQKIMHAMSTGNW-----VGGRTGVSQLLDRTSHMSTLSHLRR 479

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
            V     +S+     R L P+QWG LCP +TPEG+ CGLVKN AL+  V+    E   + +
Sbjct: 480  VISPLTRSQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSEGYPEEKALKI 539

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               LGVED +  +G      N   V  NG ++G H   K   D +R  RR G I   ++V
Sbjct: 540  LRDLGVEDRQYETG------NLARVYLNGNLVGYHGDGKSLTDDIRARRRKGLISHQINV 593

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLD 642
              +++ + V +  D GR+ RPL++ + G  +    H + L  G    DD +REG+IE++D
Sbjct: 594  RYDDRTQEVMVNCDKGRIRRPLLVVENGNIKYTSRHRELLERGKIDVDDLVREGVIEWID 653

Query: 643  VNEENNALIALYEGDA-------------------------------------------- 658
              EE NA IA+Y  D                                             
Sbjct: 654  AEEEENAYIAVYAYDVPERCPHCNRVLGRGDVIWANPGEGEHVTLQCKHCGAEFEVEKKL 713

Query: 659  TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
            T + TH+EI+P  ILG +AG +PYPHHN SPR T   AM KQ++G  A N   R D+  +
Sbjct: 714  TEEHTHLEIDPLLILGAVAGCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGH 773

Query: 719  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
            LL YPQ P++ T+T++ V + +  AGQNA VA++SY GY+++DAIVMNK++++RGFGR  
Sbjct: 774  LLHYPQAPIVKTKTMDFVNFMRRPAGQNAVVAIISYHGYNMQDAIVMNKAAVERGFGRST 833

Query: 779  VVKKYTAINQKYANSTSDR--ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              + Y +  ++Y     DR  I  PD  G   E             +LD+DGL +P   +
Sbjct: 834  FFRTYKSEERRYPGGQEDRFEIPSPDVRGAMTEER---------YKLLDEDGLISPEMYV 884

Query: 837  KPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
            +  DV I K SP   LE    ++ P      + R +  T + P+ E   VD V L   +N
Sbjct: 885  RGGDVLIGKTSPPRFLEEEAELLGP-----QKRRESSVTMR-PE-EVGWVDSVLLTVSEN 937

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
                +K  +R  R PELGDKF+SRHGQKGV G IV QED PF+E GI PDLI+NPH  PS
Sbjct: 938  NSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAIVPQEDMPFTEGGIIPDLIINPHAIPS 997

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            RMTVG ++E++GGK G   GRF  G+ F GEP       +++ E LV++GF YNGK+++Y
Sbjct: 998  RMTVGHILEMIGGKVGSLEGRFVDGTVFKGEPE------KALREALVRNGFKYNGKEIMY 1051

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEM 1072
             GITG  ++A IF+G IYYQKL HMV  K HAR  GP  +LTRQPTEGR+R GGLR GEM
Sbjct: 1052 DGITGRKIEAEIFIGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRLGGLRFGEM 1111

Query: 1073 ERDCLIAYGASMLIFERLMVSSDPFEVQVC--RVCGLLGYYNHKLKAGICSTCKNGDNIS 1130
            ERD LI +GA+M+I +RL+ +SD   + VC    CG +  ++ K     C  C N  NI 
Sbjct: 1112 ERDTLIGHGAAMVIKDRLLDNSDGTVLYVCGNPECGHIAMFDRKRGILRCPVCGNTTNIY 1171

Query: 1131 SMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             ++  YA KL+  EL S+ ++ RLK+ +
Sbjct: 1172 PIETSYAFKLMHDELASLGVIMRLKVGD 1199


>gi|320101550|ref|YP_004177142.1| DNA-directed RNA polymerase subunit B' ;DNA-directed RNA polymerase
            subunit B' [Desulfurococcus mucosus DSM 2162]
 gi|319753902|gb|ADV65660.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
            subunit B' [Desulfurococcus mucosus DSM 2162]
          Length = 1165

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1198 (35%), Positives = 640/1198 (53%), Gaps = 120/1198 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
            D + ++ ++ + +GLV+QHLDS+               +R +  + PSI   F+++RI +
Sbjct: 12   DLWIVMRKYFEEKGLVRQHLDSY---------------ERFLKELLPSILEEFREIRIAE 56

Query: 90   -------------PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
                         P  T ++G+ E  +P  CRL ++TYA P+ V +        E     
Sbjct: 57   KTRIVIEKYRVDEPKWTSIEGIEESKSPMECRLRNLTYATPVYVTVRI----EDESGYTR 112

Query: 136  KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN 195
            + ++ +  +P+ML+S    L      EL  +GE P DPGGYFII G+EKV++ QE L+ N
Sbjct: 113  EQELKLMDLPVMLKSSIDPLSKLTPEELVAMGEDPRDPGGYFIINGSEKVIVAQEDLASN 172

Query: 196  RVIIDTDKKGNIN---ASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252
             +I+D   +G+     A VTS     +S+ VI+  K  ++    Q   K P +++M A+G
Sbjct: 173  NIIVDAMPEGSSVTHVAKVTSVARGRRSQLVIERRKDGVFYASFQG-HKFPAVMLMVALG 231

Query: 253  MESDQEVVQMVGRDPRYSALLLPSI----EECANLDI---------------YTQEKALE 293
            + S+ E++      P     LLPSI    E    L+I               Y +    E
Sbjct: 232  LASEAEILYATSLKPEVHNHLLPSIIQIQEVLPKLEIPEGASEEEVERLKEEYRRRVVEE 291

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANV---PVHNNNFRPKCFYVAVMLRRMVE 350
             L+    +   G P  +R  RA  +L +  L ++   P      R K  ++  M+ R++E
Sbjct: 292  ALDFIASKFIIGKPREERILRAQRLLDERLLPHIGTDPSPETRLR-KAVFIGQMISRIIE 350

Query: 351  AMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL 410
              L   + DDKD+  NKRL+L+G +++ L          E+++ V+  L+K   + + DL
Sbjct: 351  LYLGYRSPDDKDHYRNKRLKLAGDMLATLLRAAIMGFSREIKEGVEKQLAK---TRKVDL 407

Query: 411  SQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
                    IT  L   ++TGN+        R G++Q+L R + + TL H+ RV     + 
Sbjct: 408  KMVFKPSIITDRLLHAMATGNW-----PGGRTGVSQLLDRTNMLSTLSHLRRVVSPLARG 462

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
            +     R L  +QWG +CP +TPEG   GLVKNLALMT+V+   ++  +  L Y +GV  
Sbjct: 463  QPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSVGVDDKEIELLLYRIGVVP 522

Query: 531  L-------------------ELLSGEELHNPNSFL--VIFNGLILGKHRRPKCFADVMRK 569
            L                   ++ +  EL    S    V  NG ++G HR  +  A  +R+
Sbjct: 523  LVSINTGDKSYKGILDIIREDVSAAVELSEKYSGWSKVFLNGKLVGYHRNGEELARAIRE 582

Query: 570  LRRAGKIGEFVSV------FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL 623
            LRR GKI   V+V      +V+E    V + +D GR+ RPL++ + G  ++   H+K L 
Sbjct: 583  LRRKGKISSEVNVAHINSGYVDE----VVVNTDPGRIRRPLIVVENGKPKLTREHVKMLE 638

Query: 624  DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYP 683
            +G   F+D +++G+IEYLD +EE NA IAL  G    + TH+EI    ILG+ A +IPYP
Sbjct: 639  EGRLGFEDLVKQGIIEYLDPDEEENAYIALEPGSVGAEHTHMEIWIPAILGITASIIPYP 698

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRN YQ AM KQ++G  A N   RMD+  + L YPQ+PL+ TR ++++GY++  A
Sbjct: 699  EHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQKPLVQTRAMDVIGYNERPA 758

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQN  VAV++Y+GY++EDA+++NKSS+DRG  R    + YT +  KY     D I  P  
Sbjct: 759  GQNMVVAVLTYTGYNMEDALILNKSSVDRGLARSTFFRLYTTVEYKYPGGIQDEITIPS- 817

Query: 804  TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 863
            T     R Q  +        L++DG+ AP   +   DV I K SP     +     G T 
Sbjct: 818  TNIRGYRGQKAYEK------LEEDGIVAPETPVTGGDVLIGKISPPRFLSAQEYEVGSTL 871

Query: 864  SRYRSA---RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            +R  ++   R   KG      VVD V +  D  G+  IK  +R  R PELGDKF+SRHGQ
Sbjct: 872  TRQDTSVVMRHEEKG------VVDTVLITMDSEGNKLIKVRVRDLRIPELGDKFASRHGQ 925

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KGV G +V Q D PF+E G+ PDLI+NPH FPSRMTV +++E + GKA    GR    + 
Sbjct: 926  KGVVGLLVPQYDMPFTEEGVVPDLIINPHAFPSRMTVAQLMESIAGKAAALEGRTFDATP 985

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            F     +   +E +   + +HG+S  G++ +Y G TG  L A +F+G +YYQKL HMV D
Sbjct: 986  F-----YKTPIEELQVIIKRHGYSPTGEEAMYDGRTGELLDAPVFIGVVYYQKLHHMVSD 1040

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            KMHAR  GP  +LTRQPTEGR+R GGLR GEME DCL+ +G++ML+ E +   SD   + 
Sbjct: 1041 KMHARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCLVGHGSAMLLKEAMTDRSDSTIIY 1100

Query: 1101 VCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            VC +CG +G+Y+      +C   K    +  +++ YA KLL+QEL S+ I PRL   E
Sbjct: 1101 VCELCGSMGWYDRNKGKYMCPVHKERGVLKPVEVSYAFKLLLQELMSLGIRPRLITGE 1158


>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus ND90Pr]
          Length = 1262

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1252 (33%), Positives = 662/1252 (52%), Gaps = 153/1252 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             +P I 
Sbjct: 26   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPIIK 85

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY----------- 123
                ++F  V + +P+ T  DG + +L PH  RL ++TY+  +L +IE            
Sbjct: 86   RRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRDP 145

Query: 124  -------VQGSHT--------EKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAEL 163
                   ++G +T        E+  M  +D     V IG++P+MLRS  C L  + +A+L
Sbjct: 146  EGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDADL 205

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTET 217
              L ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G       I ++V   T  
Sbjct: 206  FALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRL 265

Query: 218  VKSKTVIQMEK-----GK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV--- 263
            + S  +   E      GK       Y  L      +P+ +V +A+G+ SD+E++  +   
Sbjct: 266  ISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYD 325

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
              D +   LL PSIEE +   +  +E AL+++    KR       + R   A  I++  F
Sbjct: 326  RTDTQMLELLKPSIEEGSV--VQDRETALDFI---AKRGANSGTRDRRLKFARDIMQREF 380

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  L
Sbjct: 381  LPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRIL 440

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRK 442
            F  +  +V K +   +     +  F++   +    IT GL+ +L+TGN+ D K+    + 
Sbjct: 441  FLKLTKDVYKYLQRCVEN---NQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            NL+LM +V+   +  P+I       ++ LE    ++  NP++  V  NG+ +G H   + 
Sbjct: 558  NLSLMCYVSVGSDASPIIDFMTQRNMQLLE--EYDQNQNPDATKVFVNGVWVGVHSNAQQ 615

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM--- 619
               V+++LRR G +   +S+  + + R   I +D GRV RPL + +  I +   +H+   
Sbjct: 616  LVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFT 675

Query: 620  KELLDGVRS----------------------FDDFLREGLIEYLDVNEENNALIALYEGD 657
            KE+ + +++                      +   +++G++EYLD  EE  A+I     D
Sbjct: 676  KEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPED 735

Query: 658  ----------------------------ATPDT-----THIEIEPFTILGVIAGLIPYPH 684
                                          PD      TH EI P  ILG+ A +IP+P 
Sbjct: 736  LEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIPFPD 795

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L AG
Sbjct: 796  HNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAG 855

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA+ +Y GY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R 
Sbjct: 856  QNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA 915

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ  +
Sbjct: 916  --DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQKTT 965

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
             +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  
Sbjct: 966  LHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTI 1025

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PF+  G+ PDLI+NPH  PSRMT+  ++E L  K G   G+    + F + 
Sbjct: 1026 GITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDV 1085

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TV+ IS+ L   G+   G +++Y+G TG  L+  IF+GP YYQ+L+HMV DK+HA
Sbjct: 1086 -----TVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHA 1140

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC +
Sbjct: 1141 RARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDI 1200

Query: 1105 CGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CGL+     +LK G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1201 CGLMSPIA-QLKKGLYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|289596766|ref|YP_003483462.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum boonei T469]
 gi|289534553|gb|ADD08900.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum boonei T469]
          Length = 1201

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1156 (36%), Positives = 632/1156 (54%), Gaps = 121/1156 (10%)

Query: 85   VRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
            +RIG+P +    G + ++ P   RL D++Y AP+ + I+ ++         E   V IG 
Sbjct: 83   IRIGRPEIKEATGATVQITPMEARLRDLSYLAPLYLKIKVLECDDAGCYEREPEMVKIGD 142

Query: 144  IPIMLRSCRCVLY-----------GKDE--------AELARLGECPLDPGGYFIIKGTEK 184
             P+M++S  C L+            KD+         +L  +GE P DPGGYFII G+E+
Sbjct: 143  FPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDPDDPGGYFIIGGSER 202

Query: 185  VLLIQEQLSKNRVIIDTDKKGNI---NASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVK 240
            VL+  E L+ NRV+++ +++ N     A V S     ++ T+++ +  G + + +     
Sbjct: 203  VLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYRALTIMEKKSDGIIVVSVPAVAG 262

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY------TQEKALEY 294
             IP++++MKA+G+E DQ++ + +  D + S + L +IEE  N  +Y      TQ  A+EY
Sbjct: 263  TIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEEVENDKLYPPNGIRTQRDAIEY 322

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            LE   KR   G     RE +   IL    L ++     +   K +Y+  M RR++E  L 
Sbjct: 323  LE---KRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLELHLG 379

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
                DDKD++ NKRL+LSG L+  LF   F+ ++ +++  ++   ++  +  R  +S  I
Sbjct: 380  LRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNR-KKGIRIRVS--I 436

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
             +D +T  +   +STGN+        R G++Q+L R S + TL H+ RV     +S+   
Sbjct: 437  RQDVLTQKIMHAMSTGNW-----VGGRTGVSQLLDRTSHMSTLSHLRRVISPLTRSQPHF 491

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
              R L P+QWG LCP +TPEG+ CGLVKN AL+  V+    E  ++ +   LGVE+ +  
Sbjct: 492  EARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSEGYPEEDVLKILKGLGVEERQYE 551

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            +GE         V  NG ++G H+      + +R  RR G I   +++  ++    V I 
Sbjct: 552  TGELAR------VYLNGNLVGYHKDGLALTNEIRSKRRKGLISHQINIRYDDTTNEVMIN 605

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            SD GR+ RPL++ + G  +    H + L  G    +D +REG++E++D  EE NA IA+Y
Sbjct: 606  SDKGRIRRPLLVVENGNVKYTSRHRELLRRGKMEIEDLVREGVVEWIDAEEEENAYIAVY 665

Query: 655  EGDA--------------------------------------------TPDTTHIEIEPF 670
              D                                             T + TH+EI+P 
Sbjct: 666  AYDVPERCPHCGRVLGRNDVEWMNPGEGEKVTLRCKHCGAEFGVEKKITKEHTHLEIDPL 725

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILG +AG +PYPHHN SPR T   AM KQ++G  A N   R D+  +LL YPQ P++ T
Sbjct: 726  LILGAVAGCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRT 785

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +T++ V + +  AGQNA VA++SY GY+I+DAIVMNK+S++RGFGR    + Y +  ++Y
Sbjct: 786  KTMDFVNFMRRPAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRY 845

Query: 791  ANSTSDR--ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
                 D+  I  PD  G   E             +LD+DGL +P   +K  DV I K SP
Sbjct: 846  PGGQEDKFEIPSPDVRGAMTEDR---------YKLLDEDGLISPEVYVKGGDVLIGKTSP 896

Query: 849  ---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
               LE    ++ P      + R +  T + P+ E   VD V L   +N    +K  +R  
Sbjct: 897  PRFLEEESELLGP-----QKRRESSVTMR-PEEEGW-VDSVLLTVSENNSRLVKVKVRDQ 949

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R PELGDKF+SRHGQKGV G I+ QED PF+E GI PDLI+NPH  PSRMTVG ++E++G
Sbjct: 950  RIPELGDKFASRHGQKGVVGAIIPQEDMPFTESGIIPDLIINPHAIPSRMTVGHILEMIG 1009

Query: 966  GKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
            GK G   GRF  G+ F GEP       +++ E LVK+GF YNGK+++Y GITG  ++A I
Sbjct: 1010 GKVGSLEGRFVDGTVFSGEPE------KALREALVKNGFKYNGKEIMYDGITGRKIEAEI 1063

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F+G IYYQKL HMV  K HAR  GP  +LTRQPTEGR+R GGLR GEMERD LI +GA+M
Sbjct: 1064 FVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAM 1123

Query: 1085 LIFERLMVSSDPFEVQVC--RVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            +I +RL+ +SD   + VC    CG +  ++ K     C  C N  NI  ++  YA KL+ 
Sbjct: 1124 VIKDRLLDNSDGTVLYVCGNPECGHIAMFDRKRGILRCPVCGNTTNIYPIETSYAFKLMH 1183

Query: 1143 QELQSMNIVPRLKLAE 1158
             EL S+ ++ R+K+ +
Sbjct: 1184 DELASLGVIMRMKVGD 1199


>gi|296243132|ref|YP_003650619.1| DNA-directed RNA polymerase subunit B' [Thermosphaera aggregans DSM
            11486]
 gi|296095716|gb|ADG91667.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
            subunit B' [Thermosphaera aggregans DSM 11486]
          Length = 1163

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1191 (35%), Positives = 654/1191 (54%), Gaps = 105/1191 (8%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            +V D + ++ ++ + +GLV+QHLDS++ F+   + ++++    I   I   + +   D R
Sbjct: 6    TVDDLWLVMKKYFEEKGLVRQHLDSYDRFIRELLPEMLKEFKEI--PITEDVKITIVDYR 63

Query: 87   IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIP 145
            I +P  +T++G+ E+  P  CRL ++TYAAP++V I+YV  S   K    + ++ +  +P
Sbjct: 64   IEEPKWITLEGIPERKTPMECRLRNLTYAAPVMVKIKYVDESGRSK----EQELKLMDLP 119

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG 205
            +ML+S    L      EL  +GE P DPGGYFII G+EKVL+ QE L+ N +I D   +G
Sbjct: 120  VMLKSSIDPLSKMTPEELTSIGEDPKDPGGYFIINGSEKVLVAQEDLASNNIITDVAPEG 179

Query: 206  NIN---ASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
            +     A + S ++  +S+ VI+  K G  Y   N    KIP++V+MKA+G+  + E++ 
Sbjct: 180  SSYTHLAKIISVSKGKRSQLVIERRKDGTFYA--NFQGHKIPVIVLMKALGLVGEDEILY 237

Query: 262  MVGRDPRYSALLLPSIEECANLDIYTQE------------------------KALEYLEG 297
             V  +      + PSI+E +   I+ +E                        +AL+Y+  
Sbjct: 238  AVSLNSDIQLHMFPSIQEVSK--IFPREPLPEGLSPEEEERVLRERREKEVEEALDYIGS 295

Query: 298  KVKRSTFGSPPNDREGRAFSILRDVFLANV---PVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            ++     G P  +R  RA   L +  L ++   P      + K  ++  M+ R++E  L 
Sbjct: 296  RI---AIGRPREERIRRALRALDENLLPHIGTDPSPETRIK-KAVFIGQMISRIIELHLG 351

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
                DDKD+  NKRL+L+G L+S+L          +++++ +  L+K   + + DL   +
Sbjct: 352  FREPDDKDHYRNKRLKLAGDLLSVLLRTALLAFTRDLKESAEKYLAK---NRKLDLKMVV 408

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
                IT  +   ++TGN+        + G++Q+L R + + TL H+ RV     + +   
Sbjct: 409  KPSVITDRILHAMATGNW-----PGGKTGVSQLLDRTNMLSTLSHLRRVVSPLSRGQPHF 463

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
              R L  +QWG +CP +TPEG   GLVKNLALM +V+    E  +  + Y   V+ L  +
Sbjct: 464  EARELHGTQWGRMCPFETPEGANIGLVKNLALMVNVSVGVPESEIEPILYKHQVKPLITI 523

Query: 535  S----------------------GEELHNPNSF----LVIFNGLILGKHRRPKCFADVMR 568
            +                      G EL  P+ +     V  NG ++G H   +     +R
Sbjct: 524  TDRATGKTVKGILDEVKEAVRKYGGEL--PSEYEGWSKVYLNGRLIGYHPNGEELVKELR 581

Query: 569  KLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV 626
            K+RR GK+   V++     E    VY+ +D GR+ RPL++ +KG  ++   H+++L  G 
Sbjct: 582  KMRRQGKLSPEVNIAHIKTEYLDEVYVNTDPGRIRRPLLVVEKGEIKLTRTHLEKLRKGE 641

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
             SF+D + +G+IEYLD +EE NA IAL   + T + TH EI    ILG+ A +IPYP HN
Sbjct: 642  ISFEDLVHKGIIEYLDPDEEENAYIALSIDNITSEHTHAEIWIPAILGITASIIPYPEHN 701

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRN YQ AM KQ++G  + N   RMD+  + L YPQ+PL+ TR++E++GY++  AGQN
Sbjct: 702  QSPRNMYQAAMAKQSLGLYSANFQKRMDTRGHFLHYPQKPLVQTRSMEVIGYNERPAGQN 761

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
              VAV++++GY+IEDA++MNKSS DRG  R    + Y+ +  KY     D I+ P     
Sbjct: 762  MVVAVLTFTGYNIEDALIMNKSSADRGLARSTFFRLYSTVEYKYMGGQQDEIVIPPTNIR 821

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
            G   ++           L++DG+ AP   +   DV + K SP    G+     G   ++ 
Sbjct: 822  GYRGLRAYEK-------LEEDGIVAPETQVAGGDVLVGKISPPRFLGAQEYMLGAGLTKQ 874

Query: 867  RSA---RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
             ++   R   KG      +VD V + +D  G+  +K  +R  R PELGDKF+SRHGQKGV
Sbjct: 875  DTSVVMRHEEKG------IVDTVLITTDNEGNKLVKVRVRDLRIPELGDKFASRHGQKGV 928

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G +V Q D PF+E G+ PDL++NPH FPSRMTVG++IE + GK     GR    + F  
Sbjct: 929  LGLLVPQYDMPFTEDGVVPDLVINPHAFPSRMTVGQLIESIAGKVAALEGRVVDATPF-- 986

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
               H   V+ +   L +H +  +G++++Y G TG  + + +F+G +YYQKL HMV DK+H
Sbjct: 987  ---HKTPVKDLEIVLKRHRYLPSGEEVMYDGRTGEMISSPVFIGIVYYQKLHHMVSDKVH 1043

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GP  +LTRQPTEGR+R GGLR GEME DCL+ +G S+L+ E ++  SD   V VC 
Sbjct: 1044 ARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCLVGHGTSLLLRETILDRSDITRVYVCE 1103

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +CG +G+Y+      +C   K   ++  +++ YA KLL+QEL S  + PRL
Sbjct: 1104 ICGHIGWYDRNKGKYLCPIHKEKGSLKPVEISYAFKLLLQELMSFGVKPRL 1154


>gi|254169060|ref|ZP_04875898.1| DNA-directed RNA polymerase, beta subunit, putative [Aciduliprofundum
            boonei T469]
 gi|197622030|gb|EDY34607.1| DNA-directed RNA polymerase, beta subunit, putative [Aciduliprofundum
            boonei T469]
          Length = 1201

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1156 (36%), Positives = 632/1156 (54%), Gaps = 121/1156 (10%)

Query: 85   VRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGR 143
            +RIG+P +    G + ++ P   RL D++Y AP+ + I+ ++         E   V IG 
Sbjct: 83   IRIGRPEIKEATGATVQITPMEARLRDLSYLAPLYLKIKVLECDDAGCYEREPEMVKIGD 142

Query: 144  IPIMLRSCRCVLY-----------GKDE--------AELARLGECPLDPGGYFIIKGTEK 184
             P+M++S  C L+            KD+         +L  +GE P DPGGYFII G+E+
Sbjct: 143  FPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDPDDPGGYFIIGGSER 202

Query: 185  VLLIQEQLSKNRVIIDTDKKGNI---NASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVK 240
            VL+  E L+ NRV+++ +++ N     A V S     ++ T+++ +  G + + +     
Sbjct: 203  VLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYRALTIMEKKSDGIIVVSVPAVAG 262

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY------TQEKALEY 294
             IP++++MKA+G+E DQ++ + +  D + S + L +IEE  N  +Y      TQ  A+EY
Sbjct: 263  TIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEEVENDKLYPPNGIRTQRDAIEY 322

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            LE   KR   G     RE +   IL    L ++     +   K +Y+  M RR++E  L 
Sbjct: 323  LE---KRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLELHLG 379

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
                DDKD++ NKRL+LSG L+  LF   F+ ++ +++  ++   ++  +  R  +S  I
Sbjct: 380  LRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNR-KKGIRIRVS--I 436

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
             +D +T  +   +STGN+        R G++Q+L R S + TL H+ RV     +S+   
Sbjct: 437  RQDVLTQKIMHAMSTGNW-----VGGRTGVSQLLDRTSHMSTLSHLRRVISPLTRSQPHF 491

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
              R L P+QWG LCP +TPEG+ CGLVKN AL+  V+    E  ++ +   LGVE+ +  
Sbjct: 492  EARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSEGYPEEDVLKILKGLGVEERQYE 551

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
            +GE         V  NG ++G H+      + +R  RR G I   +++  ++    V I 
Sbjct: 552  TGELAR------VYLNGNLVGYHKDGLALTNEIRSRRRKGLISHQINIRYDDTTNEVMIN 605

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
            SD GR+ RPL++ + G  +    H + L  G    +D +REG++E++D  EE NA IA+Y
Sbjct: 606  SDKGRIRRPLLVVENGNVKYTSRHRELLRRGKMDIEDLVREGVVEWIDAEEEENAYIAVY 665

Query: 655  EGDA--------------------------------------------TPDTTHIEIEPF 670
              D                                             T + TH+EI+P 
Sbjct: 666  AYDVPERCPHCGRVLGRNDVEWMNPGEGEKVTLRCKHCGAEFGVEKKITKEHTHLEIDPL 725

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILG +AG +PYPHHN SPR T   AM KQ++G  A N   R D+  +LL YPQ P++ T
Sbjct: 726  LILGAVAGCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRT 785

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            +T++ V + +  AGQNA VA++SY GY+I+DAIVMNK+S++RGFGR    + Y +  ++Y
Sbjct: 786  KTMDFVNFMRRPAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRY 845

Query: 791  ANSTSDR--ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
                 D+  I  PD  G   E             +LD+DGL +P   +K  DV I K SP
Sbjct: 846  PGGQEDKFEIPSPDVRGAMTEDR---------YKLLDEDGLISPEVYVKGGDVLIGKTSP 896

Query: 849  ---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
               LE    ++ P      + R +  T + P+ E   VD V L   +N    +K  +R  
Sbjct: 897  PRFLEEESELLGP-----QKRRESSVTMR-PEEEGW-VDSVLLTVSENNSRLVKVKVRDQ 949

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R PELGDKF+SRHGQKGV G I+ QED PF+E GI PDLI+NPH  PSRMTVG ++E++G
Sbjct: 950  RIPELGDKFASRHGQKGVVGAIIPQEDMPFTESGIIPDLIINPHAIPSRMTVGHILEMIG 1009

Query: 966  GKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
            GK G   GRF  G+ F GEP       +++ E LVK+GF YNGK+++Y GITG  ++A I
Sbjct: 1010 GKVGSLEGRFVDGTVFSGEPE------KALREALVKNGFKYNGKEIMYDGITGRKIEAEI 1063

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1084
            F+G IYYQKL HMV  K HAR  GP  +LTRQPTEGR+R GGLR GEMERD LI +GA+M
Sbjct: 1064 FVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAM 1123

Query: 1085 LIFERLMVSSDPFEVQVC--RVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            +I +RL+ +SD   + VC    CG +  ++ K     C  C N  NI  ++  YA KL+ 
Sbjct: 1124 VIKDRLLDNSDGTVLYVCGNPECGHIAMFDRKRGILRCPVCGNTTNIYPIETSYAFKLMH 1183

Query: 1143 QELQSMNIVPRLKLAE 1158
             EL S+ ++ R+K+ +
Sbjct: 1184 DELASLGVIMRMKVGD 1199


>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1255

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1252 (35%), Positives = 658/1252 (52%), Gaps = 157/1252 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++V           I+P +  
Sbjct: 24   DCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVLDQTLPPSEDEIEPIVVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY------------ 123
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + +              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGREKIGKP 143

Query: 124  -------------VQGSHTEKTT-------MEKNDVVIGRIPIMLRSCRCVLYGKDEAEL 163
                          QG++ E  T       M++  V IG++PIML+S  C+L   +E+ L
Sbjct: 144  TDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEETVFIGKMPIMLKSKYCILKDLNESSL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSS 214
                ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           I ++V   
Sbjct: 204  YAWNECPYDSGGYFVINGSEKVLIAQERSAGN--IVQVFKKAPPSPTPYIAEIRSAVEKG 261

Query: 215  TETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            +  + S T+    KG          +   L      IPI+VV +A+G+ SD++++  +  
Sbjct: 262  SRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIPIVVVFRALGVVSDEDILNHICY 321

Query: 266  DPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILR 320
            D   +    +L P IEE     I  +E AL+++    KR +  S  N DR  R A  I++
Sbjct: 322  DRNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSNLNHDRRVRYARDIMQ 376

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++  +  +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF
Sbjct: 377  KELLPHISQNEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLASLF 436

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKM 439
              LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+   
Sbjct: 437  RTLFTRVTKDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAAS 493

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             + G++QVL+R +F  +L H+ R +    +  K++ PR L  + WG++CP +TPEG+ACG
Sbjct: 494  AKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 553

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALM ++T      P++       +E LE    E    PN+  V  NG+ +G HR 
Sbjct: 554  LVKNLALMCYITVGTPAEPIVDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRD 611

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--------GI 611
            P      M+ LRR   I   VS+  + ++R   I +D GRVCRPL + D         G+
Sbjct: 612  PSHLVTTMQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSGGL 671

Query: 612  SRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA----- 652
               KEH  K              E  +    +D  +R G +EY+D  EE   +I      
Sbjct: 672  VLNKEHIRKLEADKDLPTDMAPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVMTPED 731

Query: 653  ------LYEGDATPD--------------------TTHIEIEPFTILGVIAGLIPYPHHN 686
                  L  G A PD                     TH EI P  ILGV A +IP+P HN
Sbjct: 732  LEISRQLQAGYALPDDETSDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHN 791

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQN
Sbjct: 792  QSPRNTYQSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQN 851

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA+ +YSGY+ ED+++MN+SS+DRG  R +  + Y    +       +R  +P R   
Sbjct: 852  AIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERFEKPMRLDT 911

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
               R             LD+DG+ APG  +   D+ I K +PL      +   GQ    +
Sbjct: 912  LGMRKGTYDK-------LDEDGIVAPGVRVSGEDIIIGKTAPLAADAEEL---GQRTKAH 961

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
                 +      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G
Sbjct: 962  TKIDVSTPLRSTENGIVDQV-LISTGNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIG 1020

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +
Sbjct: 1021 ITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----T 1074

Query: 986  GHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
               D TV+S+S  L +HG+   G +++++G TG  L A +F+GP YYQ+L+HMV DK+HA
Sbjct: 1075 PFTDVTVDSVSRLLREHGYQSRGFEVMFNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHA 1134

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  
Sbjct: 1135 RARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDD 1194

Query: 1105 CGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CGL+     KLK G+  C  C N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1195 CGLMTPVA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARM 1245


>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
          Length = 1210

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1217 (35%), Positives = 645/1217 (52%), Gaps = 135/1217 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ FV T I+++V  +  ++              +   
Sbjct: 24   DCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENKRY 83

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVN----------------- 120
             + F  + I +PS T  DG +  + P   RL ++TY++P+ V+                 
Sbjct: 84   EITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKDNE 143

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
            +E++Q    + T   +  V +G++PIMLRS  C+L    E E   L ECP D GGYF+I 
Sbjct: 144  LEWIQEEPDKDT---ETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVIN 200

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKS---KTVIQMEK 228
            G+EKVL+ QE+ + N  I+   KK           I +++   +  + S   K   + EK
Sbjct: 201  GSEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK 258

Query: 229  G----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
            G     +   L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 259  GVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE-- 316

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 317  GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 373

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 374  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVEN 433

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+++  +   +IT GL  +L+TGN+  +R  M  R G++QVL R ++  TL H+
Sbjct: 434  ---GGDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHL 490

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LMT ++      P++
Sbjct: 491  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPIL 550

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       + P+S  V  NG+ +G HR P    D MR+LRR+G +   V
Sbjct: 551  GFLRDYGLEVLEDYVPS--NAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEV 608

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---------- 623
            S+  + +++   I +D GRV RPL I D       KG  +I + H+K+LL          
Sbjct: 609  SIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLLRSDELDEDDE 668

Query: 624  ---DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA---------------------- 658
               +   ++   + +G++EY+D  EE   +IA+   D                       
Sbjct: 669  DYENSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVSESEQQKIQLEEQEL 728

Query: 659  -------------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
                         T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 729  DPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVF 788

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++M
Sbjct: 789  LTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIM 848

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N+SS+DRG  R +  + Y  I ++      +   +P R    ++ +++ H +      LD
Sbjct: 849  NQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTR----SDTLRLKHGT---YEKLD 901

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            +DGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+
Sbjct: 902  EDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTK-RDASTPLRST--ESGIVDQ 958

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PDLI
Sbjct: 959  VLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLI 1018

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTV  +IE L  K     G     S F +      T E IS  L  HG+  
Sbjct: 1019 INPHAIPSRMTVAHLIECLLSKVSSLSGFEGDASPFTDV-----TTEQISTLLRDHGYQS 1073

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+G
Sbjct: 1074 RGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDG 1133

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCK 1124
            GLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +CK
Sbjct: 1134 GLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCK 1193

Query: 1125 NGDNISSMKLPYACKLL 1141
            N  NI  + +PYA KLL
Sbjct: 1194 NKTNIYQIHIPYAAKLL 1210


>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
            Ankara]
 gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
          Length = 1223

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1188 (35%), Positives = 654/1188 (55%), Gaps = 82/1188 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV----------RANDRIVSGIDPSIF 79
            D ++++  F    GLV Q ++SFN F+   +++I+          + N R    ++ S+ 
Sbjct: 60   DTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQPNYRPEEEVENSVV 119

Query: 80   --LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQ--GSHTEK 131
              L+F  + + +PS+   DGV + + P   RL ++TYA+ + ++IE   Y+   G  T+ 
Sbjct: 120  YKLKFGQLSLSKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETYINEDGKLTQT 179

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
             +     V + R+P+M +S  C   G ++ +L+ +GEC  D GGYF++ G E+VL+ QE+
Sbjct: 180  DSTVYPRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVVNGGERVLIAQER 239

Query: 192  LSKNRVIIDTDKKGNINA-----SVTSSTETVKSKTVI----QMEKGKMYLLLNQFVKKI 242
            ++ N V +   K    +A     S     + V S T++    Q+ K KM  +L      I
Sbjct: 240  MANNFVYVFNKKNSKYSAVAQLRSQPDFIQGVTSLTIMISNSQLTKNKMVAVLPYIRSDI 299

Query: 243  PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
            P+ ++ +A+G  SD++++Q +     D +  +L+  S+EEC+  +  +QE+ L+++ GK 
Sbjct: 300  PVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSSLEECS--EYTSQEQCLDFI-GK- 355

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
            +  T G+   +R   A   LR  FL +V     +   KCFY+  M+ R++   L +   D
Sbjct: 356  RGPTVGALQEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINED 415

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS- 418
            D+++ G KRL+L+G L++  F  LF+ +  +V++    + ++      FD++  I   S 
Sbjct: 416  DREHFGKKRLDLAGSLMASSFGTLFRKLAKDVER---FLKNQIDSGRSFDVAGAIKSCSQ 472

Query: 419  ITVGLERTLSTGNFD---------VKRFKMH-----------RKGMTQVLARLSFIGTLG 458
            IT GL+  L TG            +K+F +            R G++QVL RL+F   L 
Sbjct: 473  ITQGLQYQLLTGTHSKIIKIKFILLKKFTIWNWGRDKDGNVVRTGVSQVLNRLTFASYLS 532

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R++    +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM +++       
Sbjct: 533  HLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSLSST 592

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            ++      G++ L+ +S   +   +   +  NG  +G   +P    +V+ +LRR G I  
Sbjct: 593  ILDFLLEFGMDSLDEIS--PILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGNISS 650

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 638
              S+  +     + I +D GR  RPL I +     I + H   + +   ++   +  G++
Sbjct: 651  ETSIVRDIMSNEIKIFTDSGRSMRPLYIVENNRLLITKRHANMIENNQLTWSGLMETGVV 710

Query: 639  EYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
            EY+D  EE   +IA++  D   +       TH EI P  ILGV A +IP+P  NQSPRNT
Sbjct: 711  EYIDCEEEEICMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNT 770

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG  + N   RMD+L ++L YPQ+PL+ TR++E + + +L AG N+ VA+M
Sbjct: 771  YQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIM 830

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS-DRILRPDRTGPGAERM 811
             Y+GY+ ED+++MN+SS+DRG  R +  + Y++  +KY  ST  +   +P  TG      
Sbjct: 831  CYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSS-EEKYLGSTVIESFTKPTSTGKFLNLK 889

Query: 812  QVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQ 871
            +  +        LD+DGL  PG  +  +D+ I + SP+E+  +    T + + R   +  
Sbjct: 890  RGDYSK------LDNDGLIEPGSRVLGDDIIIGRSSPVESDPNNPQYTPEMNLRMDCSCC 943

Query: 872  TYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 931
                 +G   VVD V L  +  G    K  +R  R P++GDKF+SRHGQKG  G   + E
Sbjct: 944  LRPNENG---VVDNVLLTVNNKGCKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRME 1000

Query: 932  DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTV 991
            D PF+  GI PD+IMNPH  PSRMT+G +IE L GK G   G     + F +      T+
Sbjct: 1001 DLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKM-----TL 1055

Query: 992  ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1051
            E IS  L K  +S  G +  ++G TG  + + IF+GP YYQ+LKHMV DK+HAR  GP  
Sbjct: 1056 EQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVT 1115

Query: 1052 MLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY 1111
            MLTRQPTEGR+R GGLR GEMERDC+I++GA+ ++ ERL   SD + V VC  CGLL   
Sbjct: 1116 MLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVA 1175

Query: 1112 NHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            N    +  C+ C N   IS + +PYACKLL+QEL +M I P+L L EA
Sbjct: 1176 NLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLILTEA 1223


>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
            RIB40]
          Length = 1221

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1231 (36%), Positives = 654/1231 (53%), Gaps = 134/1231 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++            +DP +  
Sbjct: 9    DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPDEDEVDPVVVR 68

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM- 134
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + I        E++   
Sbjct: 69   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRERSVAD 128

Query: 135  -------------EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
                          +  V IG++PIML+S  C+L    E  L    ECP D GGYFII G
Sbjct: 129  RDDEEIEEDEDRKAQETVFIGKVPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIING 188

Query: 182  TEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQMEKG----- 229
            +EKVL+ QE+ + N V +        T     I ++V   +  +   ++    KG     
Sbjct: 189  SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKG 248

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECAN 282
                 +   L      IPI+VV +A+G+ SD++++  +  D   +    +L P IEE   
Sbjct: 249  GFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEE--G 306

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRDVFLANVPVHNNNFRPKCFY 340
              I  +E AL+++    KR +  S  N +R  R A  I++   L ++     +   K F+
Sbjct: 307  FVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFF 363

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
            +  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF  LF  +  ++Q+ V   + 
Sbjct: 364  LGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVE 423

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
                +    L+  I   ++T GL+  L+TGN+ + K+    + G++QVL+R ++  TL H
Sbjct: 424  T---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSH 480

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM +VT      P+
Sbjct: 481  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSEPI 540

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            I       +E LE    E    PN+  V  NG+ +G HR P    + M+ LRR   I   
Sbjct: 541  IDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRDPAHLVNTMQSLRRRNMISHE 598

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADK--------GISRIKEH-----HMKEL---L 623
            VS+  + ++R   I +D GRVCRPL + D         G+   KEH       KEL   L
Sbjct: 599  VSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVLNKEHIRKLEQDKELPPDL 658

Query: 624  DG------VRSFDDFLREGLIEYLDVNEENNALIA-----------LYEGDATPD----- 661
            D          +D  +R G++EY+D  EE   +I+           L  G A P+     
Sbjct: 659  DPEDRRERYFGWDGLVRSGVVEYVDAEEEETIMISMTPEDLEISKQLQAGYALPEEELDP 718

Query: 662  --------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 719  NKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 778

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED++VMN+
Sbjct: 779  NFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVVMNQ 838

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + YT   +    +  +R  +P R      R             LD+D
Sbjct: 839  SSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQDTIGMRKGTYDK-------LDED 891

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +   D+ I K +PL      +   GQ    +     +      E+ +VD+V 
Sbjct: 892  GIIAPGVRVSGEDIIIGKTAPLAPDAEEL---GQRTKAHTKLDVSTPLRSTESGIVDQV- 947

Query: 888  LCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
            L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G   +QED PFS  G+ PDL++
Sbjct: 948  LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDLVI 1007

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSY 1005
            NPH  PSRMT+  +IE    K  VS  R   G A    +   D TV+S+S  L +HG+  
Sbjct: 1008 NPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TPFTDVTVDSVSRLLREHGYQS 1061

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+G
Sbjct: 1062 RGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDG 1121

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTC 1123
            GLR GEMERDC+IA+GAS  + ERL   SDPF V +C  CGL+     KLK G+  C  C
Sbjct: 1122 GLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPVA-KLKKGLFECRLC 1180

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1181 NNKHRISQVHIPYAAKLLFQELASMNIAARM 1211


>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
            10762]
          Length = 1254

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1256 (34%), Positives = 661/1256 (52%), Gaps = 160/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR-----ANDRIVS----GIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F  T +++I+      A DR +S    G   +I  
Sbjct: 18   DCWTVIQSFFESKGLVSQQLDSFDEFAATTMQEIISETETIAVDRNLSPEDDGHGATIVK 77

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--------EYVQG 126
                + F    I Q +MT  DGV+  L PH  RL ++TYA+PI + +        E   G
Sbjct: 78   KRWQIEFGKATISQAAMTEGDGVTRALFPHEARLRNLTYASPIYLEMKKRVMIAKEKPAG 137

Query: 127  SH----------------TEKTTMEKND--------------VVIGRIPIMLRSCRCVLY 156
            S+                 E  T  + D              V IG++P+ML+S  C L 
Sbjct: 138  SYWDEEQERWEAPEEWDGQEYETFWQRDPEDEASPDADTATKVFIGKLPVMLKSKICTLR 197

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-------INA 209
             + E EL    ECP D GGYFII G+EKVL+ QE+ + N V +   K+G+       I +
Sbjct: 198  NRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQV-FKKRGSPTPVVAEIRS 256

Query: 210  SVTSSTETVKSKTVIQMEK------GKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQM 262
            ++   +  + +  V   E+      GK       ++K  IP++ V +A+G+ SD++++  
Sbjct: 257  AIEKGSRLISTMMVKLYERTSGTNLGKTVKATLPYIKSDIPLVAVFRALGIVSDEDILLH 316

Query: 263  VGR--DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
            + +  D +   +L P +EE A   I  +E+AL+++    +R  F      R   A  +++
Sbjct: 317  ICKRDDTQMLEMLKPCLEEAAA--IQEREQALDFIG---RRGNFAGTREKRIKFARDVMQ 371

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
              FL ++     +   K F++  M+ R+++  L +   DD+D+ G KRL+L+G L++ +F
Sbjct: 372  KEFLPHISQEEGSETRKAFFLGYMVNRLLQVQLGRVEEDDRDHFGKKRLDLAGPLMAQVF 431

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKM 439
               F  ++ +++  +   + +      F+++  +  + IT GL  +L+TGN+ D K+   
Sbjct: 432  RLKFSQLVKDIRNYLHRCVEQ---GREFNINLAVKSNIITSGLRYSLATGNWGDQKKAAS 488

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACG
Sbjct: 489  SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 548

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALM +V+      PLI      G+E LE    + + NPN+  V  NG  +G H  
Sbjct: 549  LVKNLALMCYVSVGTPGTPLIEYMRHRGMELLE--EYDAVMNPNATKVFLNGTWVGVHSS 606

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG--------- 610
                 + +++LRR   IG  V++  + ++R + + +D GRV RPL + D           
Sbjct: 607  GHQLTEALKELRRKEVIGFEVTIIRDVREREIKVFTDAGRVMRPLFVIDNNPNSPNRGNL 666

Query: 611  -ISR--------------------IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNA 649
             +SR                    + E    EL  G   +   ++ G+IEYLD  EE  A
Sbjct: 667  VLSREQVEKLSNDQKIIGSLEGQSVSEQQKAELTFG---WHGLVKNGVIEYLDAEEEETA 723

Query: 650  LIALYEGD-------------------------ATPD-----TTHIEIEPFTILGVIAGL 679
            +I +   D                         A P+      TH EI P  ILG+ A +
Sbjct: 724  MIMMTPDDLEEHKLARLGEDWVEAKEDPHRRIKAKPNKQVRMWTHCEIHPAMILGICASI 783

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + 
Sbjct: 784  IPFPDHNQSPRNTYQSAMGKQAMGVTLTNFGIRMDTMANVLYYPQKPLATTRSMEFLKFR 843

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
             L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y    ++   S  ++  
Sbjct: 844  DLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFE 903

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R+     +M+   +  L     DDDG+ +PG  +   D+ I K +P+      +   
Sbjct: 904  KPVRSD--TLKMKGGTYDKL-----DDDGIISPGSRVSGEDIIIGKTAPIAPDAEEL--- 953

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
            GQ    +     +      E  +VD+V L ++  G   +K   R T+ P++GDKF+SRHG
Sbjct: 954  GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLKFVKVRTRTTKVPQIGDKFASRHG 1013

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K G   G+    +
Sbjct: 1014 QKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALTGQEGDAT 1073

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F +      T+ SIS  L +HGF   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1074 PFTDV-----TLTSISTLLEEHGFQRRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVD 1128

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL+  SD F V
Sbjct: 1129 DKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRV 1188

Query: 1100 QVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+      K K   C  C+N + I+ + +PYA KLL QEL +MN+  R+
Sbjct: 1189 HICEICGLMTPIAKLKEKTIECRQCRNKNRIAQVIIPYAAKLLFQELAAMNVATRM 1244


>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1743

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1256 (35%), Positives = 661/1256 (52%), Gaps = 162/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++            IDP +  
Sbjct: 509  DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDKIDPVVLR 568

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-------------- 121
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 569  RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 628

Query: 122  --EYVQGS--------------HTEKTTM-----EKNDVVIGRIPIMLRSCRCVLYGKDE 160
              +  QG               H E   +     E+ +V IGR+PIML+S  C+L   +E
Sbjct: 629  RDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 688

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTS 213
              L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V  
Sbjct: 689  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 748

Query: 214  STETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  + 
Sbjct: 749  GSRILSQLSIKLFGKGDTSKSGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 808

Query: 265  RDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AF 316
             D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A 
Sbjct: 809  YDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYAR 860

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L+
Sbjct: 861  DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 920

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  LF  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K
Sbjct: 921  ANLFRILFMRVTKDLYKYVQRCVET---NRQLYLNIGVKASTLSGGLKYALATGNWGEQK 977

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 978  KAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 1037

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM  +T      P+I       +E LE    E   +PN+  V  NG+ +G
Sbjct: 1038 QACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNATKVFVNGVWVG 1095

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------ 609
             HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + +       
Sbjct: 1096 VHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 1155

Query: 610  --GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
               +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I +
Sbjct: 1156 CGSLVLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 1215

Query: 654  YEGD-------------------------------ATPDTTHIEIEPFTILGVIAGLIPY 682
               D                                T   TH EI P  ILG+ A +IP+
Sbjct: 1216 TPEDLETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPF 1275

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 1276 PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 1335

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 1336 AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 1395

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 1396 RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEEL---GQR 1445

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 1446 TKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQK 1504

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R   G A 
Sbjct: 1505 GTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA- 1561

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV D
Sbjct: 1562 ---TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDD 1618

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1619 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1678

Query: 1101 VCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +C +CGL+     KLK G   C  CKN + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1679 ICDICGLMTPI-AKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARM 1733


>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
 gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
          Length = 1229

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1228 (35%), Positives = 661/1228 (53%), Gaps = 132/1228 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN-----DRIVSGIDPS------I 78
            D + ++  F   +GLV Q LDSF+ F+ T I+++V  +     D+      P+       
Sbjct: 20   DCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHTTPNDNQNKRF 79

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
             + F  + + +P+MT  DG +  + P   R  ++TY++P+ V+++       +     + 
Sbjct: 80   EITFGKIYLSRPTMTEADGSTHPMYPQEARARNLTYSSPLYVDMKKRVLFSIDDPARPEA 139

Query: 138  DVV----------------IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            DVV                IG++PIMLRS  C+L G  E +L  L ECP D GGYF+I G
Sbjct: 140  DVVWNPIPGEVEEPVSKVYIGKVPIMLRSKFCILRGLRENDLYELNECPYDQGGYFVING 199

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKS---KTVIQMEKG 229
            +EKVL+ QE+ + N  I+   KK           I ++V   +  + S   K   + +KG
Sbjct: 200  SEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSAVEKGSRLISSMQIKMFGRSDKG 257

Query: 230  KMYL--LLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLD 284
             + +   L      IPI+VV +A+G+  D ++++ +     D +   +L P IEE     
Sbjct: 258  PVTIKAALPYVRADIPIVVVFRALGVVPDGDILEHICYDNNDWQMLEMLKPCIEEA--FV 315

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+Y+ G+ + S  G     R   A  IL+   L ++         K +++  M
Sbjct: 316  IQDREVALDYI-GR-RGSAVGVNRERRVRYARDILQKELLPHITQEEGFETRKAYFLGYM 373

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + RM+   L +   DD+D+ G KRL+L+G L++ +F  LFK +  ++ +    +L     
Sbjct: 374  VHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRMLFKKLTKDIYR---YMLKCVET 430

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
            +  F+L+  +  ++IT GL+ +L+TGN+ D K+    R G++QVL R +F  TL H+ R 
Sbjct: 431  NKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFASTLSHLRRT 490

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P+I+  
Sbjct: 491  NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSFPIINFL 550

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
               G+E LE        +  S  V  NG+ +G HR      D+++ LRR G I   VS+ 
Sbjct: 551  DEWGMEPLEDYVPHT--HTTSTRVFVNGVWVGVHRDATQLTDMIKSLRRMGDIESEVSII 608

Query: 584  VNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL------------- 623
             + +++ + I +D GRV RPL + +       KG   +++ H+ +L              
Sbjct: 609  RDIREKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHIYQLQQQMAEQAETEGDE 668

Query: 624  ---DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD----------------------- 657
               D    ++  +  G+IEY+D  EE   +IA+   D                       
Sbjct: 669  GKGDKNTGWNWLVDNGVIEYIDGEEEETVMIAMTPEDLEFSRQMQAGVEMPEDELDPARR 728

Query: 658  -------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
                    +   TH EI P  ILG++A +IP+P HNQSPRNTYQ AMGKQAMG    N  
Sbjct: 729  VKPAYNPHSHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYD 788

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED++VMN+SS+
Sbjct: 789  VRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSI 848

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            DRG  R +  + Y    ++   S  +   +P R    A+ +++ H +      LDDDGL 
Sbjct: 849  DRGLFRSLFFRSYMDQERRVGMSVVEEFEKPTR----ADTLRMKHGT---YDKLDDDGLV 901

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVAL 888
             PG  +   D+ I K +P+      +   GQ  ++Y + R     P    E  +VD+V L
Sbjct: 902  CPGVRVSGEDIIIGKTAPIPPDAEEL---GQR-TKYHTKRDA-STPLRSTENGIVDQVLL 956

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             +++ G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PFS  G+ PD+I+NP
Sbjct: 957  TTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPDIIINP 1016

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNG 1007
            H  PSRMTV  +IE L  K  VSC         G+ +   D TV++IS+ L  HG+   G
Sbjct: 1017 HAIPSRMTVAHLIECLLSK--VSC----LSGLEGDATPFTDVTVDAISKLLRSHGYQSRG 1070

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y G TG  + A  F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R GGL
Sbjct: 1071 FEVMYHGHTGKKIMAQCFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRSREGGL 1130

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKNG 1126
            R GEMERDC+IA+GA+  + ERLM +SD F + VC VCG +    N K     C +C+N 
Sbjct: 1131 RFGEMERDCMIAHGAAAFLKERLMEASDAFRIHVCGVCGSMNVIANLKKNQFECRSCRNK 1190

Query: 1127 DNISSMKLPYACKLLIQELQSMNIVPRL 1154
              I  +++PYA KLL QEL +MNI PRL
Sbjct: 1191 TKIYQVQIPYAAKLLFQELMAMNIAPRL 1218


>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1212

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1196 (35%), Positives = 647/1196 (54%), Gaps = 96/1196 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGIDPSIFLR 81
            D + ++  + + +GLV+Q LDSF+ F+   ++++V  +  I        + G D   + R
Sbjct: 30   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVGYDDEAYDR 89

Query: 82   -------------FKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS 127
                         F  V + +P+ +  DG    + PH  RL +MTY+AP+ V+++  Q  
Sbjct: 90   EQEKETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLRNMTYSAPLYVDVDLNQYQ 149

Query: 128  HTEK--------------TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDP 173
               +               T       +G +PIMLRS  CVL  KD+A+L+ LGEC  D 
Sbjct: 150  VGREVNVNDPSEDLGEPVATEHAKKEFLGYVPIMLRSLFCVLSDKDDADLSDLGECVYDQ 209

Query: 174  GGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKT------VIQM- 226
            GGYF+I G+EKV++ QE+LS N V     K+ +  + V  +   V++ T       IQM 
Sbjct: 210  GGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQMY 269

Query: 227  --------EKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
                    E  ++   L      IP++++ +A+G  +D+++++ V     D     L  P
Sbjct: 270  HKGGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRP 329

Query: 276  SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
            S+EE     I  Q+ AL+++ G+ + S       DR   A +IL+   L +V    +   
Sbjct: 330  SLEEA--FVIQRQDVALDFI-GR-RGSARDVTKEDRMRYAQAILQKEVLPHVGTEEHCET 385

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV 395
             K F++   + +++   L +   DD+D+ G KRL+L+G L+  LF  LF+ +  +V+K +
Sbjct: 386  KKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHL 445

Query: 396  DIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIG 455
               L +      F++   I  + IT GL+ +L+TGN+  K     + G++QVL RL++  
Sbjct: 446  QRCLDE---GKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMAT-KAGVSQVLNRLTYAS 501

Query: 456  TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
            +L H+ R +    ++ K + PR L  + WGM+CP +TPEG+A GLVKNLALM ++TT   
Sbjct: 502  SLSHLRRCNTPLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYITTGTA 561

Query: 516  EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK 575
            + P++        E+L  +    +  PN+  +  NG  +G HR PK   +  R LRR   
Sbjct: 562  QVPVLEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKALEETFRSLRRMVD 621

Query: 576  IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL-----DGVRSFD 630
            I   VS+  +   + V I +D GR+CRPL +  +    IK+HH+ +L      +   ++ 
Sbjct: 622  IDAEVSIVRDIADKEVRIYTDAGRICRPLFVVQEQKLAIKKHHIMQLQGMDPNEKKLTWT 681

Query: 631  DFLREGLIEYLDVNEENNALIAL------YEGDATPDTTHIEIEPFTILGVIAGLIPYPH 684
            D L EGL+EY+D  EE   ++A+       +   +   TH EI P  ILGV A +IP+P 
Sbjct: 682  DLLMEGLVEYIDTEEEETTMVAMEPNDLDSDDSYSSTYTHCEIHPSMILGVCASIIPFPD 741

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG  A N   RMD++ ++L YPQ+PL TTR +E + + +L +G
Sbjct: 742  HNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSG 801

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS--TSDRILRPD 802
             N  V ++ Y+GY+ ED++++N+S++DRG  R    + Y  I+Q+ A++  T   +    
Sbjct: 802  VNCIVGILVYTGYNQEDSLILNQSAIDRGLFRSSYYRCY--IDQEKASTVGTIGSLTSEL 859

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
               P  +  + + H     L  DDDGL APG  +  +DV I K +P++        T   
Sbjct: 860  FEKPSMDSTRGMKHGEYGKL--DDDGLVAPGTRVSGDDVLIGKTAPIDA-------TAGM 910

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
             SRY     +      E  +VD V + + K G    K  IR+ R P++GDKF+SRHGQKG
Sbjct: 911  PSRYSKRDCSTSMKANEHGIVDNVLISTTKEGYRFTKVRIRNVRTPQIGDKFASRHGQKG 970

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
              G   +QED PF+  GI PD+I+NPH  PSRMT+ ++IE L GK  V      +    G
Sbjct: 971  TIGMTYRQEDMPFTVEGIVPDIIVNPHAIPSRMTIAQLIECLLGKVVV------FQGCEG 1024

Query: 983  EPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
            + +   D TVE IS  L   G+  +G + +Y G TG PL A +F+GP +YQ+LKH+V DK
Sbjct: 1025 DATPFTDVTVEDISTRLHAMGYQRHGNEALYQGHTGRPLNARVFIGPTFYQRLKHLVDDK 1084

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +H+R  GP  MLTRQP EGR+R+GGLR+GEMERDCLI +G +  + +R  V+SD + + +
Sbjct: 1085 VHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFMRDRFFVNSDQYRIHI 1144

Query: 1102 CRVCGLLGYYNHKLKAGICST---CKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C  CGL    N K     C +         I  +++PYA KLL+QEL SM I  R+
Sbjct: 1145 CERCGLTAQANLKKMTYECRSPMCVGRPTQICQVEIPYAAKLLLQELNSMCIQTRI 1200


>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1277

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1183 (35%), Positives = 649/1183 (54%), Gaps = 83/1183 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI--------VSGIDP---SI 78
            D + ++  +   +GLV+Q LDSF+ F+ + + ++V +   I        + G D    + 
Sbjct: 107  DAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTF 166

Query: 79   FLRFKDVRIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNI-----EYVQGSHTEKT 132
             + F  V + +P+    DG    + PH  RL ++TY +P+  +I     E   G  +++ 
Sbjct: 167  QINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQED 226

Query: 133  TMEKNDV--------VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
                            +G +PIMLRS  CVL  + + EL  LGEC  D GGYF+I G+EK
Sbjct: 227  GEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEK 286

Query: 185  VLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLLLN- 236
            VL+  E++S N V     ++         I + V +S     S  +    KG  +  +N 
Sbjct: 287  VLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNG 346

Query: 237  -------QFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDI 285
                    +++  +P+++V +A+G  +D+ +++ +  D   + ++    PS+EE    D+
Sbjct: 347  GHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEA---DV 403

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
               +   +   GK + S      N+R   A  +L+  FL +V +       K F++  M+
Sbjct: 404  IQNQVVAQDFIGK-RGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMV 462

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             +++   L +   DD+D+ G KRL+L+G L++ LF  LF+ +   V+K + + L K    
Sbjct: 463  HKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDK---G 519

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
            ++F +   I    IT GL+ +L+TGN+  K+    + G++QVL RL++   L H+ R++ 
Sbjct: 520  TQFVVGTAIKSQFITDGLKYSLATGNWGDKKTAT-KAGVSQVLNRLTYASALSHLRRLNT 578

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +  K + PR L  + WG +CP +TPEG+A GLVKNLALM +++      P++     
Sbjct: 579  PLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEE 638

Query: 526  LGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVN 585
              +E+L+ ++   +   N   V  NG  +G HR P      +   RRA  I   VSV  +
Sbjct: 639  WAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRD 698

Query: 586  EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNE 645
             K R + + +D GRVCRPL + +    RI++ H+ +L D    + + +++G++EY+D  E
Sbjct: 699  IKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQGVVEYIDTEE 758

Query: 646  ENNALIALY------EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGK 699
            E   ++A+        G  +   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGK
Sbjct: 759  EETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGK 818

Query: 700  QAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDI 759
            QAMG  A N   RMD+L ++L YP++PL+TTR +E + + +L +G N  V +M YSGY+ 
Sbjct: 819  QAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMVYSGYNQ 878

Query: 760  EDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS--------TSDRILRPDRTGPGAERM 811
            ED+++MN+S++DRG  R    +  T  +Q+ A          +++   RP R     E  
Sbjct: 879  EDSLIMNQSAVDRGLFRSSFFR--TLNDQEKAGRGMGDMAVLSAESFERPAR-----ENT 931

Query: 812  QVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQ 871
              + H N   L  ++DGL APG  +   DV I K +PL    + ++      S+  S+  
Sbjct: 932  AGMKHGNYDKL--EEDGLVAPGTRVSGTDVLIGKTTPLGGGVAGVTGGPGHRSKKDSSTV 989

Query: 872  TYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 931
                 DG   +VDRV L +++ G    K  IR+ R P++GDKF+SRHGQKG  G   +QE
Sbjct: 990  MRSHEDG---IVDRVMLTTNQEGFKFCKVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQE 1046

Query: 932  DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTV 991
            D P+S  GI PD+I+NPH  PSRMT+ ++IE L GK GV  G     + F +      TV
Sbjct: 1047 DMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDV-----TV 1101

Query: 992  ESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRV 1051
             ++S TL K GF  +G +++YSG TG  L   +F+GP +YQ+LKH+V DK+H+R  GP +
Sbjct: 1102 ANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVM 1161

Query: 1052 MLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY 1111
             LTRQP EGR R+GGLR+GEMERDCLI++G +  + +RL ++SD + V VC  CGL+   
Sbjct: 1162 NLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVA 1221

Query: 1112 NHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N +  +  C  CK   ++S + +PYACKLL QEL +M I PR+
Sbjct: 1222 NLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRM 1264


>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1258

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1255 (34%), Positives = 658/1255 (52%), Gaps = 160/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++            IDP +  
Sbjct: 24   DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDPVVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I        E+   E
Sbjct: 84   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 143

Query: 136  KND-----------------------------------VVIGRIPIMLRSCRCVLYGKDE 160
            ++D                                   V IGR+PIML+S  C+L   +E
Sbjct: 144  RDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 203

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTS 213
              L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I +++  
Sbjct: 204  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAIEK 263

Query: 214  STETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  + 
Sbjct: 264  GSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 323

Query: 265  RDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AF 316
             D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A 
Sbjct: 324  YDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYAR 375

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L+
Sbjct: 376  DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  LF  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K
Sbjct: 436  ANLFRILFMRVTKDLYKYVQRCVET---NRQLYLNIGVKASTLSGGLKYALATGNWGEQK 492

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 493  KAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 552

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM ++T      P+I       +E LE    E   +PN+  V  NG+ +G
Sbjct: 553  QACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNATKVFVNGVWVG 610

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------ 609
             HR P    + ++ LRR   I   VS+  + + R   I +D GRVCRPL + +       
Sbjct: 611  VHRDPSHLVNTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 670

Query: 610  --GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
               +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I +
Sbjct: 671  CGSLVLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730

Query: 654  YEGD-------------------------------ATPDTTHIEIEPFTILGVIAGLIPY 682
               D                                T   TH EI P  ILG+ A +IP+
Sbjct: 731  TPEDLETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPF 790

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 791  PDHNQSPRNTYQAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQN+ VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 851  AGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 910

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 911  RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEEL---GQR 960

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQK 1019

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R   G A 
Sbjct: 1020 GTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA- 1076

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV D
Sbjct: 1077 ---TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDD 1133

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1134 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1193

Query: 1101 VCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +C +CGL+       K+   C  CKN + IS + +PYA KLL QEL SMNI  RL
Sbjct: 1194 ICDICGLMTPIAKLKKSDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARL 1248


>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
          Length = 1174

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1204 (35%), Positives = 663/1204 (55%), Gaps = 116/1204 (9%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSI----FL 80
            +Q++  F + +GLV+Q LDSF+ F+   ++++V  + ++V       SG +  +     +
Sbjct: 9    WQVISSFFEEKGLVRQQLDSFDSFIQNTMQELVDEHSQLVLQSNSQFSGQEGDVTRRHVI 68

Query: 81   RFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTE------ 130
            +F  V + +P  T  DG+S  L P M RL ++TYAAP+ ++I+   YV   + E      
Sbjct: 69   QFGQVYLSKPLHTEKDGMSTPLLPSMARLRNLTYAAPLYIDIKKTTYVADPNHELNQGIV 128

Query: 131  ---KTTMEKND------VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
               +  +E+ D      + +G++P+M++S  C L      EL  +GECP D GGYFII G
Sbjct: 129  NVNEMHLEQEDEVMYERIFLGKVPLMVKSSYCALSSSSNHELMGMGECPYDQGGYFIING 188

Query: 182  TEKVLLIQEQLSKNRVII----------------DTDKKGNINASVTSSTETVKSKTVIQ 225
            +EKVL+ QE+++ N+V +                   ++G  NAS       + S+   +
Sbjct: 189  SEKVLIAQERMANNQVYVFAKSPPSPYSYTAEIRSAVERGGKNASAVFVK--MLSRLADK 246

Query: 226  MEKGKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECA 281
               G+       ++K+ IPI +V +A+G+ +D++++  +  DP  +    LL P IEE  
Sbjct: 247  GTSGQYIRCQIPYIKQDIPIGIVFRALGVVADKDILSHIVYDPEDTQMLDLLKPCIEEA- 305

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  Q  AL+++ GK + +T G     R   A  IL+  FL +V V  ++   K F+ 
Sbjct: 306  -FTIQDQNVALDFI-GK-RGTTVGVRREQRIKYAREILQKEFLPHVGVEEHSESKKAFFF 362

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R+++  L +  +DD+D+   KRL+L+G L+  LF  LF+ + ++V K +   +++
Sbjct: 363  GYMINRLLQCALERRELDDRDHFAKKRLDLAGPLLGGLFRMLFRKLTTDVGKYLQKCINE 422

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHM 460
                  F+L   +    IT GL+ +++TGN+ D  +    R G++QVL R ++I TL H+
Sbjct: 423  ---GREFNLPLAVKHQIITSGLKYSIATGNWGDQSKAMSTRAGVSQVLNRYTYISTLSHL 479

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  SQ+GM+CP ++PEG+ACGLVKNLALM +V+      P++
Sbjct: 480  RRCNAPIGREGKLAKPRQLHNSQFGMVCPAESPEGQACGLVKNLALMAYVSVGSPTSPVL 539

Query: 521  SLCYCLGVEDLELLSGEELHNPN-SFL-----VIFNGLILGKHRRPKCFADVMRKLRRAG 574
                    E LE  + E L + N SF+     V  NG+ +G HR P   A+ +++LRR+ 
Sbjct: 540  --------EFLEEWAMENLADVNPSFIGGATKVFVNGVWVGIHRDPDMLAENLKQLRRSL 591

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR 634
             + + VS+  + + R + + +D GRVCRPL I   G   + ++H++ L      ++  L 
Sbjct: 592  DLSQEVSIVRDYRDRELRLYTDSGRVCRPLFIVKDGALVLTKNHVRLLEKKEIGWNQLLA 651

Query: 635  EGLIEYLDVNEENNALIALYEGD----------ATPD---TTHIEIEPFTILGVIAGLIP 681
            +G++EY+D  EE  ALI++   D            PD    TH E+ P  + GV A  IP
Sbjct: 652  DGVVEYIDTEEEETALISMTPEDLVESKMRAMNGQPDLKKWTHCELHPSLMFGVSASTIP 711

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRN Y  +  KQ +G    N   RMD+L  +L YPQ+PL+TTR +E + Y +L
Sbjct: 712  FPDHNQSPRNCYSASQSKQTIGVYLTNFQQRMDTLSSVLFYPQKPLVTTRAMEHLHYREL 771

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  + GY+ ED+I+M++S++DRG  R    + YT   +K      + I +P
Sbjct: 772  PAGQNAIVAIACHGGYNQEDSILMSQSAIDRGLFRSFFFRTYTEQVKKVGALELEEIEKP 831

Query: 802  D------RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            +      R G   E+             LD DGL  PG  +  +D+ + K  P+      
Sbjct: 832  NPRDTLIRRGNNYEK-------------LDADGLVPPGTRVSGDDILVGKTVPIPVDSEE 878

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS-DKNGDLCIKFLIRHTRRPELGDKF 914
            +   GQ  +R+     +      E  VVD+V L + D +  +C K  +R  + P++GDK 
Sbjct: 879  L---GQRTARHVKRDSSATMRSTEYGVVDQVLLTTNDLDLKMC-KTRVRSVKIPQVGDKH 934

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
             SRHGQKGV G + +QED P++  GI PD+I+NPH  PSRMT+G +IE L  K     G 
Sbjct: 935  CSRHGQKGVLGMLYRQEDLPYTADGIVPDVIINPHAIPSRMTIGHLIECLLSKVSALTGD 994

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
               G+ F +      TVE IS  L K G+   G +++Y+G TG  L A IF+GP +YQ+L
Sbjct: 995  EGDGTPFTDV-----TVEDISNALAKCGYQKRGFEVLYNGQTGQKLAANIFIGPTFYQRL 1049

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            KHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GEME D ++A+GA+M + ERL   S
Sbjct: 1050 KHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMEHDVIVAHGAAMFLKERLFDVS 1109

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D F V VC +CGL+   N    +  C  C N   IS + LPYA KLL QEL SMNI PR+
Sbjct: 1110 DAFRVHVCDLCGLMCIANLSKNSYECRICHNKTQISQIHLPYATKLLFQELMSMNIAPRI 1169

Query: 1155 KLAE 1158
             + E
Sbjct: 1170 VVDE 1173


>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
 gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1255 (33%), Positives = 659/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE-----------Y 123
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 124  VQGSHTE-----------KTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
            V+G   +           +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  VEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+GN      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   +       +GK       Y +L    +++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 556  VKNLSLMCYVSVGSDATPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   ++      
Sbjct: 613  AQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQL 672

Query: 614  -----IKEHHMKELLDG--------------VRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDREISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPI-ASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
 gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
          Length = 1171

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1146 (37%), Positives = 633/1146 (55%), Gaps = 95/1146 (8%)

Query: 74   IDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS----- 127
            +D S  + F  + + +P++  VDG    L P+  RL ++TY++P+ VN+     +     
Sbjct: 61   MDSSFPVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPD 120

Query: 128  --HTEKTTMEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
              ++EK  + ++    ++IGRIP+ML+S  C L  + E  L  +GEC  D GGYFII G+
Sbjct: 121  DPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIINGS 180

Query: 183  EKVLLIQEQLSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQME-----------K 228
            EKVL+  E+++ N V     K   K      + S  E + S +   ++           +
Sbjct: 181  EKVLIAMERMANNFVYCFQKKQPAKYTWICEIRSQAEGMLSTSGFSVKMLANLGGRSAAR 240

Query: 229  GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDI 285
            G++   +      IP++++ +A+G  SD+EV++ +     D +   LL PSIEE   + I
Sbjct: 241  GQIVCSMPYINADIPVVILFRALGCVSDREVIERIVYDFSDTQMMFLLRPSIEEA--MPI 298

Query: 286  YTQEKALEYLEGKVKRS-TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
             +QE AL+++    KR  T G+  + R   A  +L+   L ++ V       K +++  M
Sbjct: 299  MSQEVALDFI---AKRGPTIGTSKSGRIQYAKELLQKELLPHLGVKQYCEPRKAYFIGYM 355

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++   L + A DD+D+ G KR++++G L++  F  LF+ ++ + ++    IL +   
Sbjct: 356  VHRLLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKR----ILQRQVD 411

Query: 405  SSR-FDLSQFI-VRDSITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLGHMT 461
            S R FDL+  I    SIT GL   L+TGN+ + K  K  R G++QVL RL+F+ T+ H+ 
Sbjct: 412  SGRHFDLNSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHLR 471

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R++   E+S K++ PR L  + WGM+CP +TPEG+A GLVKN+ALM  +T       +  
Sbjct: 472  RMNTPLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITVGSLPNVVYD 531

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                 G+E+L+ ++  ++ +     V  NG  +G H       + +R LRR   I   VS
Sbjct: 532  FLNEWGLENLDEINPSQIKHMTK--VFLNGQWVGMHADATMLCETLRDLRRKRDIDPEVS 589

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIADKGISR---IKEHHMKELLDGVRS-----FDDFL 633
            +  + +   + I +DGGR CRPL +     S+   IK  H++ L   + +     +D  +
Sbjct: 590  IIRDLQANELRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEALRRMLLNNEHGGWDMLV 649

Query: 634  REGLIEYLDVNEENNALIALYEGDA-------------TPDTTHIEIEPFTILGVIAGLI 680
             EGL+EY+D  EE   ++A++  D                  TH EI P  ILGV A +I
Sbjct: 650  EEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCEIHPSLILGVCASII 709

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG  A N   R+D++ ++L YPQ+PL+ TR +E + + +
Sbjct: 710  PFPDHNQSPRNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQKPLVGTRAMEYLRFRE 769

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AG NA VA+M+YSGY+ ED+++MN SS+DRGF R +  K Y A  ++      +    
Sbjct: 770  LPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMADEKRQGAQVVEEFRA 829

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P  +   A  M+   +S      LD+DGL  PG  +  +D+ I K SP+           
Sbjct: 830  PSWSKTYA--MKRGDYSK-----LDNDGLINPGTRVHGDDILIGKVSPIPN--------- 873

Query: 861  QTDSRYRSARQT-------YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
            QTD   R  + T        KG D    VVD+V L  +  G    K  +R  R P +GDK
Sbjct: 874  QTDEEGRIQKYTERDCSVALKGAD--NGVVDQVMLSVNARGHKFTKIRVRTLRVPTIGDK 931

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKG  G   +QED PF++ G+ PD+IMNPH  PSRMT+G ++E L GK G+  G
Sbjct: 932  FASRHGQKGTMGISYRQEDMPFTQFGVVPDIIMNPHAVPSRMTIGHLVECLLGKVGLLSG 991

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                 + F +      TV  I   L + GF   G++++Y+G TG  L A IF+GP YYQ+
Sbjct: 992  EEGDATPFSQV-----TVHEIMARLHELGFQRQGREVMYNGHTGLRLPAKIFIGPTYYQR 1046

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMV DK+H+R  GP  MLTRQP EGR R GGLR GEMERDC+I++GA+  + ERL   
Sbjct: 1047 LKHMVEDKIHSRARGPMQMLTRQPMEGRGREGGLRFGEMERDCMISHGAAKFLKERLFDI 1106

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD + V VC  CG+    N       C  CKN   IS + +PYACKLL QEL +M+I+P+
Sbjct: 1107 SDAYRVHVCDNCGMFAIANLYKNHYECRACKN-STISQVHIPYACKLLFQELMTMSIMPK 1165

Query: 1154 LKLAEA 1159
            L L  A
Sbjct: 1166 LVLKVA 1171


>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
            20631-21]
          Length = 1272

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1260 (34%), Positives = 656/1260 (52%), Gaps = 164/1260 (13%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI---------VSGIDPSIF--- 79
            + ++  F + +GLV Q LDSF+ FV+T ++ ++  N ++         V+G +P      
Sbjct: 30   WTVISSFFESKGLVSQQLDSFDEFVSTSMQDLINENSQLTLDQNNPPPVNG-EPIQLRRY 88

Query: 80   -LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE--------------- 122
             ++F+ V I +P MT  DG + +L P   RL ++TY++ + ++++               
Sbjct: 89   EIKFRTVFIAEPMMTEGDGTTARLFPQEARLRNLTYSSALYIHLDKKVSIAVERPTPLNE 148

Query: 123  ---------YVQGSHTEKTTMEKND----------------------VVIGRIPIMLRSC 151
                        G H  K   E  D                        IG++PIML+S 
Sbjct: 149  LDDDEQAELAAGGDHPTKVVWEIEDQSMSQEEAAKLPANERPVTAEPFFIGKLPIMLKSK 208

Query: 152  RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK------- 204
             C L   D+ EL    ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK       
Sbjct: 209  YCNLKDMDDDELYGWNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKPPPSPTP 266

Query: 205  --GNINASVTSSTETVKSKTVIQMEKGKMYL-LLNQFVKK--------IPIMVVMKAMGM 253
                I +++   +  + S T+    KG        Q +K         IPI VV +A+G+
Sbjct: 267  FIAEIRSALEKGSRLISSLTIKLHSKGDTQRGSFGQTIKSTLPYIKSDIPIAVVFRALGV 326

Query: 254  ESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPND 310
             SD++++  V  D + + +L    P IEE     I  +E AL+++ GK  +S  G P + 
Sbjct: 327  VSDEDILNHVCYDRKDTQMLEMMKPCIEEA--FVIQDREVALDFI-GKRGQS-LGVPRDK 382

Query: 311  REGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLE 370
            R   A  I++   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+
Sbjct: 383  RIKHARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLD 442

Query: 371  LSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTG 430
            L+G L++ LF +LF+ +  ++ K +   +        F+ +  I   ++T GL+ +L+TG
Sbjct: 443  LAGPLLAKLFRNLFRKLTGDLYKYIQRCVEN---KKEFNPALGIKATTLTNGLKYSLATG 499

Query: 431  NF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            N+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP
Sbjct: 500  NWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 559

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             +TPEG+ACGLVKNLALM +VT      P+I       +E LE    E L +PN+  V  
Sbjct: 560  AETPEGQACGLVKNLALMCYVTVGTPSEPIIEFMIQRSMEVLE--EYEPLRSPNATKVFV 617

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG+ +G HR P    + ++ LRR+  I   VS+  + + R   I +D GRVCRPL + D 
Sbjct: 618  NGVWVGVHRDPSHLVETVQDLRRSSLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDN 677

Query: 610  -------GISRIKEHHMKELLD----------------GVRSFDDFLREGLIEYLDVNEE 646
                   G       H++ L D                G   F   + +G++EYLD  EE
Sbjct: 678  KTDSENNGKLVFNAEHIRRLEDDLALPNNMDLEEKEERGYYGFQGLINDGVVEYLDAEEE 737

Query: 647  NNALIALYEGD---------------ATPDT----------------THIEIEPFTILGV 675
               +I +   D                  D+                TH EI P  ILG+
Sbjct: 738  ETVMIVMTPQDLEDGRKARQGYTVATGAEDSINARVQTKPKATSMVYTHCEIHPSMILGI 797

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL  TR++E 
Sbjct: 798  CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTMANILYYPQKPLAITRSMEY 857

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y    ++   +  
Sbjct: 858  LKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYHDQEKRIGMNVV 917

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            ++  +P R+    + +++ H +      LDDDG+ APG  I   D+ I K +PL      
Sbjct: 918  EQFEKPFRS----DTLKLKHGT---YDKLDDDGIVAPGVRISGEDIIIGKTAPLPPDAEE 970

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
            +    ++ ++ R A    +    E  +VD+V + ++  G   +K  +R T+ P++GDKF+
Sbjct: 971  LGQRTKSHTK-RDASTPLRS--TENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFA 1027

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKG  G   +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K     G+ 
Sbjct: 1028 SRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVASLIGKE 1087

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
               + F +      TV+S+S  L   G+   G +++Y G TG  L A +F+GP YYQ+L+
Sbjct: 1088 GDATPFTDV-----TVDSVSSRLRDMGYQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLR 1142

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMV DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+I++GAS  + ERL   SD
Sbjct: 1143 HMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSD 1202

Query: 1096 PFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             F V VC +CGL+        ++  C  C+N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1203 AFRVHVCDICGLMTPIAKLNTQSFECRPCRNKTKISQVHIPYATKLLFQELASMNIAARM 1262


>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
            reilianum SRZ2]
          Length = 1242

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1215 (34%), Positives = 647/1215 (53%), Gaps = 120/1215 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---------RANDRIVSGIDPS--I 78
            D + ++  F + +GLV+  LDSFN F++  I+++V         +++       D +   
Sbjct: 57   DCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDKTRRY 116

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTE----- 130
             + F  + + +P+MT  DG S +L P   R  ++TY+A + V++  + +  SH E     
Sbjct: 117  EIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSHDEVDLNG 176

Query: 131  ---------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
                     KT +E+  + IG++PIML+S  C L G D+     L ECP D GGYF+I G
Sbjct: 177  DPAWVPEHGKTDVEEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYFVING 236

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGK---- 230
            +EKVL+ QE+++ N V + +            I ++V    +T+ +  V    + K    
Sbjct: 237  SEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEKTA 296

Query: 231  ---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECANLD 284
               +   L      IPI++V +A+G+  D+EV+Q +  D   +    +L P IEE     
Sbjct: 297  NNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEA--FV 354

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  ++ AL+++ G+ + +T G     R   A  IL+   L ++     +   K ++   M
Sbjct: 355  IQDRDVALDFI-GR-RGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYM 412

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++ A L++  +DD+D+ G KR++L G L++ LF  LF+ +  +V + +   + +   
Sbjct: 413  IHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEE--- 469

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
               F +   +   +IT GL  +L+TGN+ D K+    + G++QVL R +F  TL H+ R 
Sbjct: 470  HREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRT 529

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  VT      P++   
Sbjct: 530  NTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFL 589

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
               G   L+ L   +L +  +  +  NG+ +G H  P    D +R LRR   I   VSV 
Sbjct: 590  EEFG---LDSLVDMQLAHAKATKIFVNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVV 646

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISR--IKEHHMKELLDGVRS------FDDFLRE 635
             + ++R + I +D  RV RP+ I +       IK+ H+  +   V        +   ++E
Sbjct: 647  RDIRERELRIYTDASRVLRPVFIVNPNDMSLLIKKRHVNMIGQPVPQTGEEFGWTHLVQE 706

Query: 636  GLIEYLDVNEENNALIALYEGD-------------------------------ATPDTTH 664
            G+IEYLD  EE +ALI +   D                               A    TH
Sbjct: 707  GVIEYLDAEEEESALICMSPTDLEQSREYQARNGQISLNSADPSARLKSPHYIAPSTWTH 766

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  +LG+ A +IP+P HNQSPRN Y  AMGKQA+     N L R DS+ ++L YPQ
Sbjct: 767  CEIHPAMVLGICASIIPFPDHNQSPRNVYFSAMGKQAVSVNISNFLSRADSMNHVLCYPQ 826

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TTR++E + + +L AG N  VA+M YSGY+ ED+++MN+SS+DRG  R +  + Y 
Sbjct: 827  KPLGTTRSMEHLKFRELPAGTNCIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYYRGYV 886

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
            A  +K      +   +P+R      RM+   +  +     D DG  APG  +  +DV I 
Sbjct: 887  AEEKKVGVMQLEEFEKPNRDT--TIRMKHGTYDKI-----DADGFCAPGTRVSGDDVIIG 939

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPD-----GETCVVDRVALCSDKNGDLCIK 899
            K +PL        P    +   RS   T K         E  ++D+V L ++ +G+  +K
Sbjct: 940  KTAPL--------PPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVK 991

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
              +R+TR P+ GDKF+SRHGQKG  G   +QED PFS  G+ PD+I+NPH  PSRMT+G 
Sbjct: 992  VRVRNTRVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGH 1051

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            ++E L  K     G+    + F E      TVE++S  L   G+   G +++Y G TG  
Sbjct: 1052 LVECLLSKVAALSGQEGDATPFTEL-----TVEAVSSILRGLGYQSRGLEVMYHGHTGRK 1106

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            LQA +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R GGLR GEMERDC+IA
Sbjct: 1107 LQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIA 1166

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACK 1139
            +G +  + ER+   SDP+ + VC +CGL    N K     C +C+N   IS + +PYA K
Sbjct: 1167 HGIAGFLKERMFDVSDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAK 1226

Query: 1140 LLIQELQSMNIVPRL 1154
            LL+QEL S+N+  RL
Sbjct: 1227 LLMQELMSVNVALRL 1241


>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1258

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1255 (34%), Positives = 658/1255 (52%), Gaps = 160/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++            IDP +  
Sbjct: 24   DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDPVVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I        E+   E
Sbjct: 84   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 143

Query: 136  KND-----------------------------------VVIGRIPIMLRSCRCVLYGKDE 160
            ++D                                   V IGR+PIML+S  C+L   +E
Sbjct: 144  RDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 203

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTS 213
              L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I +++  
Sbjct: 204  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAIEK 263

Query: 214  STETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  + 
Sbjct: 264  GSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 323

Query: 265  RDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AF 316
             D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A 
Sbjct: 324  YDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYAR 375

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L+
Sbjct: 376  DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  LF  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K
Sbjct: 436  ANLFRILFMRVTKDLYKYVQRCVET---NRQLYLNIGVKASTLSGGLKYALATGNWGEQK 492

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 493  KAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 552

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM ++T      P+I       +E LE    E   +PN+  V  NG+ +G
Sbjct: 553  QACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNATKVFVNGVWVG 610

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------ 609
             HR P    + ++ LRR   I   VS+  + + R   I +D GRVCRPL + +       
Sbjct: 611  VHRDPSHLVNTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 670

Query: 610  --GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
               +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I +
Sbjct: 671  CGSLVLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730

Query: 654  YEGD-------------------------------ATPDTTHIEIEPFTILGVIAGLIPY 682
               D                                T   TH EI P  ILG+ A +IP+
Sbjct: 731  TPEDLETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPF 790

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 791  PDHNQSPRNTYQAAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQN+ VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 851  AGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 910

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 911  RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEEL---GQR 960

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQK 1019

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R   G A 
Sbjct: 1020 GTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA- 1076

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV D
Sbjct: 1077 ---TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDD 1133

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1134 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1193

Query: 1101 VCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +C +CGL+       K+   C  CKN + IS + +PYA KLL QEL SMNI  RL
Sbjct: 1194 ICDICGLMTPIAKLKKSDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARL 1248


>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
 gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1255 (34%), Positives = 658/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE-----------Y 123
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 124  VQGSHTE-----------KTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
            V+G   +           +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  VEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+GN      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   +       +GK       Y +L     ++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWADNSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 556  VKNLSLMCYVSVGSDATPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   S+      
Sbjct: 613  AQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQL 672

Query: 614  -----IKEHHMKELLDG--------------VRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDREISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTTERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPI-ASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
 gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
          Length = 1256

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1251 (35%), Positives = 656/1251 (52%), Gaps = 154/1251 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEVDPVVVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + +              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRERLVAD 143

Query: 123  ------------------YVQGSHTE--KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAE 162
                              Y+Q    E      ++  V IG++PIML+S  C+L    E  
Sbjct: 144  RDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKDLSEQA 203

Query: 163  LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSST 215
            L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   +
Sbjct: 204  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGS 263

Query: 216  ETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
              +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  D
Sbjct: 264  RLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYD 323

Query: 267  PRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRD 321
               +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++ 
Sbjct: 324  RNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQK 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF 
Sbjct: 379  EFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+    
Sbjct: 439  VLFTRVTRDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM ++T      P+I       +E LE    E    PN+  V  NG+ +G HR P
Sbjct: 556  VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRDP 613

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISR 613
                + M  LRR   I   VS+  + ++R   I +D GRVCRPL + D        G   
Sbjct: 614  AHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLV 673

Query: 614  IKEHHMKEL---------LDG------VRSFDDFLREGLIEYLDVNEENNALIA------ 652
            + + H+++L         LD          +D  ++ G++EY+D  EE   +I       
Sbjct: 674  LNKEHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDL 733

Query: 653  -----LYEGDATPD--------------------TTHIEIEPFTILGVIAGLIPYPHHNQ 687
                 L  G A P+                     TH EI P  ILGV A +IP+P HNQ
Sbjct: 734  EISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQ 793

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA
Sbjct: 794  SPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNA 853

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R+   
Sbjct: 854  IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTI 913

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
              R             LD+DG+ APG  +   D+ I K +PL      +   GQ    + 
Sbjct: 914  GMRKGTYDK-------LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAHT 963

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
                +      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G 
Sbjct: 964  KLDVSTPLRSTENGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 1022

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED PF+  G+CPDLI+NPH  PSRMT+  +IE    K  VS  R   G A    + 
Sbjct: 1023 TYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA----TP 1076

Query: 987  HAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
              D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR
Sbjct: 1077 FTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHAR 1136

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  C
Sbjct: 1137 ARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC 1196

Query: 1106 GLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+     KLK G+  C  C N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1197 GLMTPVA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARM 1246


>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1255 (34%), Positives = 659/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE-----------Y 123
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 124  VQGSHT--EKTT---------MEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
            V+G     E TT          E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  VEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G+      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   E       +GK       Y +L     ++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 556  VKNLSLMCYVSVGSDATPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   S+      
Sbjct: 613  AQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQL 672

Query: 614  -----IKEHHMKELLD--------------GVRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDREISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPIA-SIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1254

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1249 (35%), Positives = 655/1249 (52%), Gaps = 152/1249 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPDEDEVDPVVVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRERSVAD 143

Query: 123  -----------------YVQGSHTE--KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAEL 163
                             Y+Q    E      ++  V IG++PIML+S  C+L    E  L
Sbjct: 144  RDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETVFIGKVPIMLKSKYCILKDLSEQAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTE 216
                ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   + 
Sbjct: 204  YNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSR 263

Query: 217  TVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP 267
             +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  D 
Sbjct: 264  LLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDR 323

Query: 268  RYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRDV 322
              +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++  
Sbjct: 324  NDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQKE 378

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF  
Sbjct: 379  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 438

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHR 441
            LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+    +
Sbjct: 439  LFTRVTRDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAK 495

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLV
Sbjct: 496  AGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 555

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLALM +VT      P+I       +E LE    E    PN+  V  NG+ +G HR P 
Sbjct: 556  KNLALMCYVTVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRDPA 613

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--------GISR 613
               + M+ LRR   I   VS+  + ++R   I +D GRVCRPL + D         G+  
Sbjct: 614  HLVNTMQSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVL 673

Query: 614  IKEH-----HMKELLDGVR---------SFDDFLREGLIEYLDVNEENNALIA------- 652
             KEH       KEL   +           +D  +R G++EY+D  EE   +I+       
Sbjct: 674  NKEHIRKLEQDKELPPDLDPEDRRERYFGWDGLVRSGVVEYVDAEEEETIMISMTPEDLE 733

Query: 653  ----LYEGDATPD-------------------TTHIEIEPFTILGVIAGLIPYPHHNQSP 689
                L  G A P+                    TH EI P  ILGV A +IP+P HNQSP
Sbjct: 734  ISKQLQAGYALPEEELDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSP 793

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA V
Sbjct: 794  RNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIV 853

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            A+  YSGY+ ED++VMN+SS+DRG  R +  + YT   +    +  +R  +P R      
Sbjct: 854  AIACYSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQDTIGM 913

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
            R             LD+DG+ APG  +   D+ I K +PL      +   GQ    +   
Sbjct: 914  RKGTYDK-------LDEDGIIAPGVRVSGEDIIIGKTAPLAPDAEEL---GQRTKAHTKL 963

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIV 928
              +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G   
Sbjct: 964  DVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1022

Query: 929  QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHA 988
            +QED PFS  G+ PDL++NPH  PSRMT+  +IE    K  VS  R   G A    +   
Sbjct: 1023 RQEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TPFT 1076

Query: 989  D-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
            D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  
Sbjct: 1077 DVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARAR 1136

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  CGL
Sbjct: 1137 GPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGL 1196

Query: 1108 LGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +     KLK G+  C  C N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1197 MTPVA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARM 1244


>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1258

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1256 (35%), Positives = 658/1256 (52%), Gaps = 162/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEVDPVVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I        E+   E
Sbjct: 84   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRERLISE 143

Query: 136  KND-----------------------------------VVIGRIPIMLRSCRCVLYGKDE 160
            ++D                                   V IGR+PIML+S  C+L   +E
Sbjct: 144  RDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 203

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTS 213
              L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V  
Sbjct: 204  QALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 263

Query: 214  STETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  + 
Sbjct: 264  GSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 323

Query: 265  RDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AF 316
             D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A 
Sbjct: 324  YDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYAR 375

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L+
Sbjct: 376  DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  LF  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K
Sbjct: 436  ANLFRILFMRVTKDLYKYVQRCVET---NRQLYLNIGVKASTLSGGLKYALATGNWGEQK 492

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 493  KAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 552

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM ++T      P+I       +E LE    E   +PN+  V  NG+ +G
Sbjct: 553  QACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNATKVFVNGVWVG 610

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------ 609
             HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + +       
Sbjct: 611  VHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 670

Query: 610  --GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
               +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I +
Sbjct: 671  CGSLVLSKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730

Query: 654  YEGD-------------------------------ATPDTTHIEIEPFTILGVIAGLIPY 682
               D                                T   TH EI P  ILG+ A +IP+
Sbjct: 731  TPEDLEMSKQVQAGYNLPEEDHTDRNRRVRSNLSQKTHTWTHCEIHPSMILGICASIIPF 790

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 910

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 911  RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEEL---GQR 960

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K   R T+ P++GDKF+SRHGQK
Sbjct: 961  TKQHTKVDVSTPLRSTESGIVDQV-LISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQK 1019

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE    K  VS  R   G A 
Sbjct: 1020 GTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA- 1076

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+SIS  L +HG+   G +++Y+G TG  L A IF+GP YYQ+L+HMV D
Sbjct: 1077 ---TPFTDVTVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDD 1133

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1134 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1193

Query: 1101 VCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +C +CGL+     KLK G   C  CKN + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1194 ICDICGLMTPIA-KLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARM 1248


>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1256

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1251 (35%), Positives = 656/1251 (52%), Gaps = 154/1251 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEVDPVVVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + +              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRERLVAD 143

Query: 123  ------------------YVQGSHTE--KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAE 162
                              Y+Q    E      ++  V IG++PIML+S  C+L    E  
Sbjct: 144  RDEDDMGESNEDRKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKDLSEQA 203

Query: 163  LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSST 215
            L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   +
Sbjct: 204  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGS 263

Query: 216  ETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
              +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  D
Sbjct: 264  RLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYD 323

Query: 267  PRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRD 321
               +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++ 
Sbjct: 324  RNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQK 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF 
Sbjct: 379  EFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+    
Sbjct: 439  VLFTRVTRDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM ++T      P+I       +E LE    E    PN+  V  NG+ +G HR P
Sbjct: 556  VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRDP 613

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISR 613
                + M  LRR   I   VS+  + ++R   I +D GRVCRPL + D        G   
Sbjct: 614  AHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLYVVDNDPKSENCGSLV 673

Query: 614  IKEHHMKEL---------LDG------VRSFDDFLREGLIEYLDVNEENNALIA------ 652
            + + H+++L         LD          +D  ++ G++EY+D  EE   +I       
Sbjct: 674  LNKEHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDL 733

Query: 653  -----LYEGDATPD--------------------TTHIEIEPFTILGVIAGLIPYPHHNQ 687
                 L  G A P+                     TH EI P  ILGV A +IP+P HNQ
Sbjct: 734  EISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQ 793

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA
Sbjct: 794  SPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNA 853

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R+   
Sbjct: 854  IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTI 913

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
              R             LD+DG+ APG  +   D+ I K +PL      +   GQ    + 
Sbjct: 914  GMRKGTYDK-------LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAHT 963

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
                +      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G 
Sbjct: 964  KLDVSTPLRSTENGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 1022

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED PF+  G+CPDLI+NPH  PSRMT+  +IE    K  VS  R   G A    + 
Sbjct: 1023 TYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA----TP 1076

Query: 987  HAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
              D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR
Sbjct: 1077 FTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHAR 1136

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  C
Sbjct: 1137 ARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC 1196

Query: 1106 GLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+     KLK G+  C  C N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1197 GLMTPVA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARM 1246


>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp. S-93-48]
          Length = 1262

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1255 (34%), Positives = 659/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI------------- 121
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 122  -----EYVQGSHT----EKTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
                 E ++ ++T     +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  AEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+GN      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   E       +GK       Y +L     ++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWAENSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 556  VKNLSLMCYVSVGSDATPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   S+      
Sbjct: 613  AQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQL 672

Query: 614  -----IKEHHMKELLD--------------GVRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDREISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPR TYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRKTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPIA-SIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1255

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1252 (35%), Positives = 657/1252 (52%), Gaps = 157/1252 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++V           I+P +  
Sbjct: 24   DCWTVITSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVLDQTLPPSEDEIEPIVVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY------------ 123
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + +              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRERMGKP 143

Query: 124  -------------VQGSHTEKTT-------MEKNDVVIGRIPIMLRSCRCVLYGKDEAEL 163
                          QG++ E  T       M++  V IG++PIML+S  C+L   ++A L
Sbjct: 144  NDDDDNDGETDPKTQGTYLEWETKQLPQEQMKEETVFIGKMPIMLKSKYCILKDLNDASL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSS 214
                ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           I ++V   
Sbjct: 204  YAWNECPYDSGGYFVINGSEKVLIAQERSAGN--IVQVFKKAPPSPTPYIAEIRSAVEKG 261

Query: 215  TETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            +  + S T+    KG          +   L      IPI+VV +A+G+ SD++++  +  
Sbjct: 262  SRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIPIVVVFRALGVVSDEDILNHICY 321

Query: 266  DPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILR 320
            D   +    +L P IEE     I  +E AL+++    KR +  S  N DR  R A  I++
Sbjct: 322  DRNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSNLNHDRRVRYARDIMQ 376

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF
Sbjct: 377  KELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLASLF 436

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKM 439
              LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+   
Sbjct: 437  RTLFTRVTKDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAAS 493

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             + G++QVL+R +F  +L H+ R +    +  K++ PR L  + WG++CP +TPEG+ACG
Sbjct: 494  AKAGVSQVLSRYTFSSSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 553

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALM ++T      P++       +E LE    E    PN+  V  NG+ +G HR 
Sbjct: 554  LVKNLALMCYITVGTPAEPIVDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRD 611

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--------GI 611
            P      M+ LRR   I   VS+  + ++R   I +D GRVCRPL + D         G+
Sbjct: 612  PSHLVTTMQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSGGL 671

Query: 612  SRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA----- 652
               KEH  K              E  +    +D  +R G +EY+D  EE   +I      
Sbjct: 672  VLNKEHIRKLEADKDLPPDLGPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVMTPED 731

Query: 653  ------LYEGDATPD--------------------TTHIEIEPFTILGVIAGLIPYPHHN 686
                  L  G A P+                     TH EI P  ILGV A +IP+P HN
Sbjct: 732  LEISRQLQAGYALPEDETSDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHN 791

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQN
Sbjct: 792  QSPRNTYQSAMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQN 851

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA+ +YSGY+ ED+++MN+SS+DRG  R +  + Y    +       +R  +P R   
Sbjct: 852  AIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVERFEKPMRIDT 911

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
               R             LD+DG+ APG  +   D+ I K +PL      +   GQ    +
Sbjct: 912  LGMRKGTYDK-------LDEDGIVAPGVRVSGEDIIIGKTAPLAADAEEL---GQRTKAH 961

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
                 +      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G
Sbjct: 962  TKIDVSTPLRSTENGIVDQV-LVSTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1020

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +
Sbjct: 1021 ITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----T 1074

Query: 986  GHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
               D TV+S+S  L +HG+   G +++++G TG  + A +F+GP YYQ+L+HMV DK+HA
Sbjct: 1075 PFTDVTVDSVSRLLREHGYQSRGFEVMFNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHA 1134

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  
Sbjct: 1135 RARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDD 1194

Query: 1105 CGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CGL+     KLK G+  C  C N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1195 CGLMTPVA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARM 1245


>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
 gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
          Length = 1197

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1213 (34%), Positives = 646/1213 (53%), Gaps = 118/1213 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPS--I 78
            D + ++  F + +GLV+Q +DSFN F++  ++++V  +  +             D +   
Sbjct: 14   DCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQHTGQAEDKTRRY 73

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTE---- 130
             + F  + + +P  T  DG +  L P   R  ++TY+A + V++     V+G   E    
Sbjct: 74   EIEFGQIYMNKPQQTEADGSTAPLFPQEARQRNLTYSAGLHVDVSQKVLVKGEEDELDEN 133

Query: 131  -------KTTMEK---NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
                     T E+     V +G++PIML S  C L    +     L ECP D GGYFII 
Sbjct: 134  GDQLWIPDPTQEEIVDEKVYLGKVPIMLHSHFCWLTDLPDEGKYSLNECPFDSGGYFIIN 193

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYL 233
            G+EKVL+ QE+++ N V + +            I ++V    +T+ +  V    + +   
Sbjct: 194  GSEKVLIAQERMAANHVYVFSKAPPSPITFLAEIRSAVERGGKTISTMQVKLFSRNREKS 253

Query: 234  LLNQ------FVKK-IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANL 283
            L N       +++  IPI++V +A+G+  D++V+Q +     D +   +L P IEE    
Sbjct: 254  LNNTIKATLPYIRNDIPIVIVFRALGVVPDRDVLQHICYDFNDTQMLEMLKPCIEEA--F 311

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++ G+ + +T G     R   A  IL+   L ++ +   +   K ++   
Sbjct: 312  VIQDREVALDFI-GR-RGTTTGLSRFKRTAYAQEILQKEMLPHISMSEGSNTKKAYFFGY 369

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++ A L++  +DD+D+ G KRL+L+G L+S LF  LF+ +  ++ + +   +    
Sbjct: 370  MVHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSGLFRMLFRKVTRDIYRHLQRCVED-- 427

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
                F L   +   +IT GL  +L+TGN+ D K+    + G++QVL R +F  TL H+ R
Sbjct: 428  -QREFHLQAAVRHATITNGLRYSLATGNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRR 486

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM++++      P++  
Sbjct: 487  CNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSNISVGTPSAPIVEF 546

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                G+  L  + G    +P +  V  NG+ LG H  P    D +R LRR   I   VSV
Sbjct: 547  LEEFGLTSLIDMQGA---DPKATKVFVNGVWLGTHDDPGQLVDTLRDLRRKDDISHEVSV 603

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISR--IKEHHMKELLDGVRSFDDFLR---EGL 637
              + +++ + I +D GR+ RPL I D+      IK HH++ L +      D+ R    G+
Sbjct: 604  VRDIREKELRIYTDAGRLLRPLFIVDQPSMTLLIKRHHVEALNEETGEGWDWTRLVQSGV 663

Query: 638  IEYLDVNEENNALIAL-------------YEGDATPD------------------TTHIE 666
            IEYLD  EE   LI +               G   PD                   TH E
Sbjct: 664  IEYLDTEEEETVLICMSPYDLEQSREYKATNGHMPPDMSDATRRLRSAHTFAADTWTHCE 723

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+P
Sbjct: 724  IHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQIRMDTMANILYYPQKP 783

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L TTR +E + + +L AGQNA VA++ YSGY+ ED+++MN+S++DRG  R +  + +  +
Sbjct: 784  LATTRAMEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSLYYRTFQDM 843

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +K    T +   +P R    A R++   +  L     D DGL  PG  +   D+ I K 
Sbjct: 844  EKKVGVITMEEFEKPTRDT--AIRLKHGTYEKL-----DVDGLVPPGTRVSGEDIIIGKT 896

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKG-----PDGETCVVDRVALCSDKNGDLCIKFL 901
            +PL        P    +   RS   T K         E+ ++D+V + ++  G   +K  
Sbjct: 897  APL--------PPDSDELGMRSKMHTKKDVSTPMKSTESGIIDQVLITTNGEGAKFVKVR 948

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++
Sbjct: 949  VRSTRVPQVGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLV 1008

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            E L  K     G+    + F +      TV+ +S+ L   GF   G +++Y+G TG  LQ
Sbjct: 1009 ECLLSKVATLSGQEGDATPFTDL-----TVKGVSDILFSLGFQSRGLEVMYNGHTGRKLQ 1063

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1081
            A +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G
Sbjct: 1064 AQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHG 1123

Query: 1082 ASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLL 1141
             +  + ER+  +SD + + +C +CGL    N +     C  C+N   IS + +PYA KLL
Sbjct: 1124 MANFLKERMYDASDAYRLHICDLCGLTAVANLRKSTFECRACRNRSAISQIHIPYAAKLL 1183

Query: 1142 IQELQSMNIVPRL 1154
             QEL SM I  RL
Sbjct: 1184 FQELMSMGIASRL 1196


>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
          Length = 1258

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1256 (34%), Positives = 663/1256 (52%), Gaps = 162/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 24   DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDDPDPVMVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-------------- 121
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGRERSLAE 143

Query: 122  ---------------EYVQGSHTE-------KTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
                              +G++ +       +   ++ ++ IG++PIML+S  C+L    
Sbjct: 144  RDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKDLG 203

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 204  EHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 263

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 264  KGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 323

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A
Sbjct: 324  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYA 375

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ ++++  L +  +DD+D+ G KRL+L+G L
Sbjct: 376  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPL 435

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +     + +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 436  LANLFRVLFMRLTKDLYKYVQRCVET---NRQLYLNIGVKASTLTGGLKYALATGNWGEQ 492

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 493  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 552

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM ++T      P+I       +E LE    E   +PNS  +  NG+ +
Sbjct: 553  GQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKIFVNGVWV 610

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 611  GVHRDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 670

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I 
Sbjct: 671  NSGSLVLTKEHIHKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIV 730

Query: 653  L----------YEGDATPD--------------------TTHIEIEPFTILGVIAGLIPY 682
            +          Y+    P+                     TH EI P  ILG+ A +IP+
Sbjct: 731  MSPEDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPF 790

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPM 910

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 911  RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEEL---GQR 960

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQV-LVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQK 1019

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R + G A 
Sbjct: 1020 GTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA- 1076

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+S+S  L +HG+   G +++Y+G TG  L A IF+GP YYQ+L+HMV D
Sbjct: 1077 ---TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDD 1133

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1134 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1193

Query: 1101 VCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +C +CGL+     KLK G   C  CKN + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1194 ICDICGLMTPIA-KLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARM 1248


>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1255 (34%), Positives = 663/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI------------- 121
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 122  -----EYVQGSHT----EKTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
                 E ++ ++T     +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  AEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G+      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   E       +GK       Y +L     ++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 556  VKNLSLMCYVSVGSDATPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA------------ 607
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL +             
Sbjct: 613  AQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQL 672

Query: 608  --DKGISR--IKE---HHMK------ELLDGVRSFDDFLREGLIEYLDVNEENNALIALY 654
              D+ IS   +KE   H  +      ++ D    +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDREISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPIA-SIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
 gi|5105547|dbj|BAA80860.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
          Length = 1169

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1173 (35%), Positives = 642/1173 (54%), Gaps = 81/1173 (6%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID---------------- 75
            + +   F++  GL +QHLDSFN  V   I+KI+ +   +                     
Sbjct: 19   WTVYKSFIRETGLARQHLDSFNRLVTQEIQKIIDSIREVRPQWRIYAGRRRYRRGRFEEH 78

Query: 76   ----PSIFLRFKDVRIGQPSM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
                P + + F   R  +P     ++    ++ P  CR+  +TY+AP++V +  VQ +  
Sbjct: 79   EIHLPDVKIVFGKARFKEPMAREVIESFDRRVTPFECRVRGITYSAPLMVEMTIVQDNMI 138

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
            EKT     +V I   P+M++S    L   DE  +  +GE P DPGGYFII G+EKV++ Q
Sbjct: 139  EKT----REVKIADFPVMVKSVLDPLSKYDEETVIEMGEDPGDPGGYFIINGSEKVIVAQ 194

Query: 190  EQLSKNRVIIDTDKKGNINASVTSSTETV-------KSKTVIQMEKGKMYLLLNQFVKKI 242
            E L+ NR+I++  K     A +T + + V       +   V +M  G +   L++   +I
Sbjct: 195  EDLAVNRIIVN--KSTAATARITHTAKAVSTVLGLRRQAIVDRMSDGTLEASLSRLRYRI 252

Query: 243  PIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
            P++V+++A+G+E D E++  V  DP     +LPS+E+   L   T+E AL+YL  ++   
Sbjct: 253  PLVVLLRALGLEKDMEIMLAVSADPDVQREMLPSLEKGRAL-APTKEDALKYLGNRI--- 308

Query: 303  TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
              G P + R  RA   L    L ++     +   K +++A M  R+++  L K   DDKD
Sbjct: 309  APGQPLDVRIRRAEEFLDTQLLPHLGNRPEDRIKKAYFLAEMANRVLQLYLGKRGEDDKD 368

Query: 363  YVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVG 422
            ++GNKRL L+G L++ LF +  + + + + + ++  L++  R  R D   F+VR +I   
Sbjct: 369  FLGNKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAE-RRQIRLD---FLVRPTIISD 424

Query: 423  -LERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
             L+  ++TGN+        R G++Q L R ++I  L H+ RV     + +     R L  
Sbjct: 425  RLKGAIATGNWG-----QDRTGISQQLDRTNWISLLSHLRRVISPLSRGQAHFEARDLHG 479

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS-LCYCLGVEDLE--LLSGEE 538
            S WG  CP +TPEG  CGLVKNLAL  +++   +E  +   L   LGV  LE  L   ++
Sbjct: 480  SHWGRYCPFETPEGINCGLVKNLALSAYISVGVDESVVEEILVKDLGVAPLERILEEAKQ 539

Query: 539  LHNPNSFL-----VIFNGLILGKHRRPKCFADVMRKLRRAGKIG----EFVSVFVNEKQR 589
               P   +     V  NG  LG H      A  +R+LRR+ K+       VSV+   +  
Sbjct: 540  AGEPPEIMLKGTKVFINGRPLGYHPNGAELARKIRELRRSDKLEVERPWEVSVYHLREGE 599

Query: 590  C--VYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN 647
               +Y+ +D GR+ RP+V+ + G  ++   H+++L  G  +F D +++G++E LD  EE 
Sbjct: 600  IDELYVNTDSGRLMRPVVVVENGEPKLTREHVEKLSRGEITFWDLVKQGVVEMLDPEEEQ 659

Query: 648  NALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
            NALIA    + T + TH+E+    I+GV A  I Y  HNQSPRNTYQ AM KQA+G  A 
Sbjct: 660  NALIAELPWEVTKEHTHMELWVPAIVGVAAATIGYLEHNQSPRNTYQAAMAKQALGVYAL 719

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   R+DS  YLL YPQ P++ TR ++++GY++  AGQN  VA+MSY+GY+IEDA++ NK
Sbjct: 720  NYRIRLDSHSYLLQYPQVPIVQTRMLDIMGYNERPAGQNMVVAIMSYTGYNIEDALIFNK 779

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
             S+D G  R    + YT I  +Y     DRI  P        R    +        L+ D
Sbjct: 780  GSIDMGLARAYFFRVYTGIENEYPGGERDRITLPKPDEVYDYRGAAAYAK------LEAD 833

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD--GETCVVDR 885
            G+ AP   ++  ++ I + SP    G      G+  S     R+    P   GE  VVD 
Sbjct: 834  GIVAPETEVEGGEILIGRVSPPRFLGE-----GRVISMATVRRRDTSIPMRLGEKGVVDM 888

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V + +    +  +K  +R+ R PE+GDKF+SRHGQKGV G I  + D P++E GI PD+I
Sbjct: 889  VVISTTVERNKLVKVRVRNLRIPEIGDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDVI 948

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTVG+++E + GK G   GRF   + F       + ++ +   L+K G+  
Sbjct: 949  LNPHAIPSRMTVGQLLEEIAGKLGAIKGRFVDATPF-----FKEDIDGLRIELLKEGYDP 1003

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
            N ++++Y G TG  ++A I +G  YYQ+L HMV DK+HAR +G   +LTRQPTEG+AR G
Sbjct: 1004 NAREVMYDGRTGQIIEAPITIGVAYYQRLYHMVADKIHARATGRVHLLTRQPTEGKARQG 1063

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDCL+ +GASML+ +R++ +SD + + VC  CG + ++N + K   C     
Sbjct: 1064 GLRFGEMERDCLVGHGASMLLRDRMLDNSDAYVMYVCNTCGNIAWFNRRKKVLECPIHGE 1123

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              +I  +K+PYA KLL+QE+ SM I P LK+A+
Sbjct: 1124 EGDIRPVKVPYAFKLLLQEITSMMIKPELKVAD 1156


>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1258

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1256 (35%), Positives = 659/1256 (52%), Gaps = 158/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----SGIDPSIFLR--- 81
            D + ++  F   +GLV Q +DSF+ FV+T +++++  ++++V        D  I LR   
Sbjct: 20   DCWTVISSFFDAKGLVSQQIDSFDEFVSTTMQELIDEDNQLVLDHNTPSNDEGIALRRFE 79

Query: 82   --FKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY--------------- 123
              F +V + +P+ T  DG ++ + P   RL ++TYA+P+ + +                 
Sbjct: 80   IKFGNVLLSRPTFTEGDGSTQVMQPQEARLRNLTYASPLYLQMSQKVMVAREKSMAEKEE 139

Query: 124  -----------------------VQGSHTEKT--------TMEKNDVVIGRIPIMLRSCR 152
                                   V G  TE+         T     V IG+IPIML+S  
Sbjct: 140  DEDEDMDDAEEGEKKEKQDFHWQVIGDTTEEVGDDDDDIDTSNHTRVFIGKIPIMLKSQY 199

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------- 205
            CVL   +E  L  L ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK        
Sbjct: 200  CVLKEFNEDGLYGLNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQCFKKAAPSPISY 257

Query: 206  --NINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK--------IPIMVVMKAMGMES 255
               I +++   +  + S T+  M KG+      + ++         +PI VV +A+G+ S
Sbjct: 258  IAEIRSALEKGSRLISSLTIKLMAKGEGRTGFGRTIRSTLPYIKTDVPIAVVFRALGVVS 317

Query: 256  DQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            D++++  V  D   +A+L    P IEE     I  +E AL+++ GK + S  G   + R 
Sbjct: 318  DEDILNRVCYDRNDTAMLEMLKPCIEEA--FVIQDREVALDFI-GK-RGSAQGINRDKRI 373

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A  I++   L ++     +   K F++  M+ +M++  L +   DD+D+ G KRL+L+
Sbjct: 374  KYAKEIMQKELLPHISQAEGHETRKAFFLGYMVHKMLQCALERRETDDRDHFGRKRLDLA 433

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGN 431
            G L++ LF  LFK ++ +V K     L K   S R F+++  I  ++IT GL+ +L+TGN
Sbjct: 434  GPLLANLFRMLFKKLVKDVFK----YLQKCVESGRDFNVTLAIKSNTITNGLKYSLATGN 489

Query: 432  F-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            + D K+    + G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP 
Sbjct: 490  WGDQKKPASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 549

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG+ACGLVKNL+LM+++T      P+ +      +E LE    E   +PN   V  N
Sbjct: 550  ETPEGQACGLVKNLSLMSYITVGSPTEPIQAFMEQRNLEPLETF--EPGRSPNVTKVFIN 607

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-- 608
            G  +G HR        +  LRR   I   VSV  + + R   I SD GRV RPL + D  
Sbjct: 608  GSWVGVHRDAASLYRTVLSLRRTNVISHEVSVIRDIRDREFKIFSDAGRVTRPLYVIDND 667

Query: 609  -----KGISRIKEHHMKELLDGV-------------RSFDDFLREGLIEYLDVNEENNAL 650
                 KG   ++++H+++L +                 ++  L +G +EY+D  EE   +
Sbjct: 668  PGSLRKGELVLQKYHIEKLENAKFQTAEDLAPGEEKYGWNGLLNDGCVEYVDAEEEETIM 727

Query: 651  IAL--------------YE------GDATP-----------DTTHIEIEPFTILGVIAGL 679
            I++              YE      GD                TH EI P  ILG+ A +
Sbjct: 728  ISMSPEDLEISRQVQAGYEIPVDDSGDMAKRVKAKVNPYAHTWTHCEIHPSMILGICASI 787

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + 
Sbjct: 788  IPFPDHNQSPRNTYQSAMGKQAMGIFLTNFNERMDTMANILYYPQKPLATTRSMEFLKFR 847

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AGQNA V +M YSGY+ ED+++MN+SS+DRG  R +  + Y    ++   +T +   
Sbjct: 848  ELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDSEKRIGMTTIEEFE 907

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R       +++ H +      LDDDGL APG  +   D+ I K +P+      +   
Sbjct: 908  KPMRNNT----LRLKHGT---YDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADTEEL--- 957

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
            GQ    +     +      E  +VD+V L ++  G   +K  +R T+ P++GDKF+SRHG
Sbjct: 958  GQRTKNHTKRDVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTTKVPQIGDKFASRHG 1017

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   + ED PF+  GI PDLI+NPH  PSRMT+  +IE    K     G     +
Sbjct: 1018 QKGTIGITYRHEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 1077

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F E      TVE++S  L +HG+   G +++Y+G TG  L   +F+GP YYQ+L+HMV 
Sbjct: 1078 PFTEV-----TVENVSRLLREHGYQSRGFEVMYNGHTGKKLVCQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+I++GAS  + ERL   SD F V
Sbjct: 1133 DKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRV 1192

Query: 1100 QVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             VC +CGL+    N K     C  C+N   IS + LPYA KLL QEL +MNI  R+
Sbjct: 1193 HVCDICGLMTPIANLKKNLFECRPCRNKTKISQIHLPYAAKLLFQELTAMNIAARM 1248


>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1258

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1256 (34%), Positives = 663/1256 (52%), Gaps = 162/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 24   DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDDPDPVMVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-------------- 121
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGRERSLAE 143

Query: 122  ---------------EYVQGSHTE-------KTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
                              +G++ +       +   ++ ++ IG++PIML+S  C+L    
Sbjct: 144  RDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKDLG 203

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 204  EHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 263

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 264  KGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 323

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A
Sbjct: 324  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYA 375

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ ++++  L +  +DD+D+ G KRL+L+G L
Sbjct: 376  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPL 435

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +     + +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 436  LANLFRVLFMRLTKDLYKYVQRCVET---NRQLYLNIGVKASTLTGGLKYALATGNWGEQ 492

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 493  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 552

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM ++T      P+I       +E LE    E   +PNS  +  NG+ +
Sbjct: 553  GQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKIFVNGVWV 610

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 611  GVHRDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 670

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I 
Sbjct: 671  NSGSLVLTKEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIV 730

Query: 653  L----------YEGDATPD--------------------TTHIEIEPFTILGVIAGLIPY 682
            +          Y+    P+                     TH EI P  ILG+ A +IP+
Sbjct: 731  MSPEDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPF 790

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPM 910

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 911  RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEEL---GQR 960

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQV-LVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQK 1019

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R + G A 
Sbjct: 1020 GTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA- 1076

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+S+S  L +HG+   G +++Y+G TG  L A IF+GP YYQ+L+HMV D
Sbjct: 1077 ---TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDD 1133

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF + 
Sbjct: 1134 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRIH 1193

Query: 1101 VCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +C +CGL+     KLK G   C  CKN + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1194 ICDICGLMTPIA-KLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARM 1248


>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1255 (33%), Positives = 660/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI------------- 121
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 122  -----EYVQGSHT----EKTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
                 E ++ ++T     +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  AEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G+      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   E       +G+       Y +L     ++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 556  VKNLSLMCYVSVGSDASPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   S+      
Sbjct: 613  AQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQL 672

Query: 614  -----IKEHHMKELLD--------------GVRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDRDISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPIA-SIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb03]
 gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1258

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1256 (35%), Positives = 659/1256 (52%), Gaps = 162/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEVDPVVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I        E+   E
Sbjct: 84   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRERLISE 143

Query: 136  KND-----------------------------------VVIGRIPIMLRSCRCVLYGKDE 160
            ++D                                   V IGR+PIML+S  C+L   +E
Sbjct: 144  RDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 203

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTS 213
              L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V  
Sbjct: 204  QALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 263

Query: 214  STETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  + 
Sbjct: 264  GSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 323

Query: 265  RDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AF 316
             D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A 
Sbjct: 324  YDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYAR 375

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L+
Sbjct: 376  DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 435

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  LF  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K
Sbjct: 436  ANLFRILFMRVTKDLYKYVQRCVET---NRQLYLNIGVKASTLSGGLKYALATGNWGEQK 492

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 493  KAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 552

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM ++T      P+I       +E LE    E   +PN+  V  NG+ +G
Sbjct: 553  QACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNATKVFVNGVWVG 610

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------ 609
             HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + +       
Sbjct: 611  VHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 670

Query: 610  --GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA- 652
               +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I  
Sbjct: 671  CGSLVLSKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730

Query: 653  ----------------LYEGDATPDT--------------THIEIEPFTILGVIAGLIPY 682
                            L E D T                 TH EI P  ILG+ A +IP+
Sbjct: 731  TPEDLEMSKQVQAGYNLPEEDHTDRNRRVRSNLSQKAHTWTHCEIHPSMILGICASIIPF 790

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 910

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 911  RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDAEEL---GQR 960

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K   R T+ P++GDKF+SRHGQK
Sbjct: 961  TKQHTKVDVSTPLRSTESGIVDQV-LISTSNDDLKFVKVRTRTTKIPQIGDKFASRHGQK 1019

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE    K  VS  R   G A 
Sbjct: 1020 GTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA- 1076

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+SIS  L +HG+   G +++Y+G TG  L A IF+GP YYQ+L+HMV D
Sbjct: 1077 ---TPFTDVTVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDD 1133

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1134 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1193

Query: 1101 VCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +C +CGL+     KLK G   C  CKN + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1194 ICDICGLMTPIA-KLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARM 1248


>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1255 (33%), Positives = 660/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI------------- 121
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 122  -----EYVQGSHT----EKTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
                 E ++ ++T     +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  AEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G+      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   E       +G+       Y +L     ++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 556  VKNLSLMCYVSVGSDASPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   S+      
Sbjct: 613  AQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQL 672

Query: 614  -----IKEHHMKELLD--------------GVRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDRDISNRLVKEQLDHDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPIA-SIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1256

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1251 (35%), Positives = 658/1251 (52%), Gaps = 154/1251 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPNEDEVDPIVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-------------- 121
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRERLVAD 143

Query: 122  -------EYVQGSHTEKTTME------------KNDVVIGRIPIMLRSCRCVLYGKDEAE 162
                   E V+   ++ T ++            +  V IG++PIML+S  C+L    E  
Sbjct: 144  RNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKYCILKDLSEQA 203

Query: 163  LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSST 215
            L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   +
Sbjct: 204  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGS 263

Query: 216  ETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
              +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  D
Sbjct: 264  RLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYD 323

Query: 267  PRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRD 321
               +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++ 
Sbjct: 324  RNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQK 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
              L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF 
Sbjct: 379  ELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+    
Sbjct: 439  VLFTRVTRDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLALM ++T      P+I       +E LE    E    PN+  V  NG+ +G HR P
Sbjct: 556  VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGIHRDP 613

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISR 613
                + M  LRR   I   VS+  + ++R   I +D GRVCRPL + D        G   
Sbjct: 614  AHLVNTMSSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLV 673

Query: 614  IKEHHMKEL---------LDGVR------SFDDFLREGLIEYLDVNEENNALIA------ 652
            + + H+++L         LD          +D  ++ G++EY+D  EE   +I       
Sbjct: 674  LNKEHIRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDL 733

Query: 653  -----LYEGDATPD--------------------TTHIEIEPFTILGVIAGLIPYPHHNQ 687
                 L  G A P+                     TH EI P  ILGV A +IP+P HNQ
Sbjct: 734  EISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQ 793

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RM+++  LL YPQ+PL TTR++E + + +L AGQNA
Sbjct: 794  SPRNTYQSAMGKQAMGVFLTNFDQRMETMANLLYYPQKPLATTRSMEFLRFRELPAGQNA 853

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R+   
Sbjct: 854  IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTI 913

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
              R             LD+DG+ APG  +   D+ I K +PL      +   GQ    + 
Sbjct: 914  GMRKGTYDK-------LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAHT 963

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
                +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G 
Sbjct: 964  KLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 1022

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    + 
Sbjct: 1023 TYRQEDMPFTREGVAPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TP 1076

Query: 987  HAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
              D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR
Sbjct: 1077 FTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHAR 1136

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  C
Sbjct: 1137 ARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC 1196

Query: 1106 GLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+     KLK G+  C  C N   IS + +PYA KLL QEL SMNI  R+
Sbjct: 1197 GLMTPIA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARM 1246


>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
            [Meyerozyma guilliermondii]
          Length = 1219

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1228 (34%), Positives = 650/1228 (52%), Gaps = 139/1228 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
            D + ++  F + +GLV Q LDSF+ F+ + I+++V  + R++              +   
Sbjct: 22   DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRY 81

Query: 79   FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTE------ 130
             + F  + I +P+ T  DG +  + P   RL ++TY++P+ V++ + V  S         
Sbjct: 82   EITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEHE 141

Query: 131  --------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
                    K       V +G++PIMLRS  C+L    E E   L ECP D GGYF+I G+
Sbjct: 142  LEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGS 201

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY----- 232
            EKVL+ QE+ + N  I+   KK   +     A + S+ E  +   +I   + K+Y     
Sbjct: 202  EKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--RGSRLISSMQIKLYGREEK 257

Query: 233  --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                      L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE  
Sbjct: 258  STSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEE-- 315

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++    +R   G     R   A  IL+   L N+         K F++
Sbjct: 316  GFVIQEREVALDFIG---RRGALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFL 372

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +  
Sbjct: 373  GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEN 432

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
                  F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+
Sbjct: 433  ---DKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 489

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P++
Sbjct: 490  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPIL 549

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                  G+E LE       ++P+S  V  NG+ +G HR P    D MR LRR G I   V
Sbjct: 550  YFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEV 607

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---------- 623
            S+  + +++   I +D GRV RPL I D       KG  ++++ H+ +LL          
Sbjct: 608  SIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYAT 667

Query: 624  ------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---------ATPDTT----- 663
                  +G   +   + +G++EY+D  EE   +IA+   D         AT   +     
Sbjct: 668  NEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEE 727

Query: 664  ---------------------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
                                 H EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 728  QELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 787

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RMD++  +L YPQ+PL TTR +E + + +L AGQNA VA+  YSGY+ ED+
Sbjct: 788  GVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDS 847

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            ++MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +     
Sbjct: 848  MIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YE 900

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDGL APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +
Sbjct: 901  KLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRST--ESGI 957

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+ +GI P
Sbjct: 958  VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVP 1017

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKH 1001
            DLI+NPH  PSRMTV  +IE L  K     G        G+ S   D T E++S+ L +H
Sbjct: 1018 DLIINPHAIPSRMTVAHLIECLLSKVSSLSG------LEGDASPLTDVTAEAVSKLLREH 1071

Query: 1002 GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGR 1061
            G+   G +++Y G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR
Sbjct: 1072 GYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGR 1131

Query: 1062 ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGIC 1120
            +R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC VCGL+    N K     C
Sbjct: 1132 SRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLMSVIANLKKNQFEC 1191

Query: 1121 STCKNGDNISSMKLPYACKLLIQELQSM 1148
             +CKN  NI  + +PYA KLL QE  +M
Sbjct: 1192 RSCKNKTNIYQVHIPYAAKLLFQESMAM 1219


>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1255 (33%), Positives = 658/1255 (52%), Gaps = 157/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI------------- 121
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 122  -----EYVQGSHT----EKTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
                 E ++ ++T     +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  AEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCHLRNQTDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G       I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   +       +GK       Y +L     ++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWADNSLANPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   +  +E AL+++    KR       + R   A  I++ 
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--VQDRETALDFI---AKRGANQGTRDRRLKFARDIMQR 378

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             FL ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 439  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 495

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 496  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 555

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P++     +   +++LL   ++  NP +  V  NG+ +G H  
Sbjct: 556  VKNLSLMCYVSVGSDATPIVDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSH 612

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   S+      
Sbjct: 613  AQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQL 672

Query: 614  -----IKEHHMKELLDG--------------VRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 673  VFDREISNRLVKEQLDSDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 732

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 733  PEDLDEWRGMKMGLPTNERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 913  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 962

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 963  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1022

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDLI+NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1023 GTIGITYRQEDMPFTSEGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1082

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1083 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1137

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1138 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1197

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 CDICGLMSPIA-SIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1251


>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
            Muguga]
 gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
          Length = 1190

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1195 (35%), Positives = 647/1195 (54%), Gaps = 91/1195 (7%)

Query: 12   DEQLPDKQKLAAPVKSVV--DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDR 69
            D+ L   Q L A  ++    D ++++  F    GLV Q ++SFN F+   +++I+ A+  
Sbjct: 40   DQDLDHSQYLKAVDENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPP 99

Query: 70   IVSGIDP----------SIF--LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAP 116
            I     P          SI   L+F  + + +PS+   DGV + + P   RL ++TYA+ 
Sbjct: 100  IEITPQPNYRPEEEEENSILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQ 159

Query: 117  ILVNIEYVQGSHTEKTTMEKNDVV-----IGRIPIMLRSCRCVLYGKDEAELARLGECPL 171
            + ++IE     +     ++ +  V     + R+P+M +S  C   G ++ +L+ +GEC  
Sbjct: 160  VYIDIEQETFVNENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGECVF 219

Query: 172  DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA-----SVTSSTETVKSKTVI-- 224
            D GGYF++ G E+VL+ QE+++ N V +   K    +A     S     + V S T++  
Sbjct: 220  DQGGYFVVNGGERVLIAQERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQGVTSLTIMIS 279

Query: 225  --QMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEE 279
              Q+ K KM  +L      IP+ ++ +A+G  SD++++Q +     D +  +L+  S+EE
Sbjct: 280  NSQLTKNKMVAVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRASLEE 339

Query: 280  CANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCF 339
            C                   +  T G+   +R   A   LR  FL +V     +   KCF
Sbjct: 340  CK------------------RGPTVGALHEERLNFAKETLRRHFLPHVGTEVGSESKKCF 381

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIIL 399
            Y+  M+ R++   L +   DD+++ G KRL+L+G L++  F  LF+ +  +V++    + 
Sbjct: 382  YLGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVER---FLK 438

Query: 400  SKPSRSSRFDLSQFIVRDS-ITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTL 457
            ++      FD++  I   S IT GL+  L TGN+   K   + R G++QVL RL+F   L
Sbjct: 439  NQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGNWGRDKDGNVVRTGVSQVLNRLTFASYL 498

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
             H+ R++    +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM +++      
Sbjct: 499  SHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSLSS 558

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIG 577
             ++      G++ L+ +S   +   +   +  NG  +G   +P    +V+ +LRR G I 
Sbjct: 559  TILDFLLEFGMDSLDEIS--PILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGNIS 616

Query: 578  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGL 637
               S+  +     + I +D GR  RPL I +     I + H   + +   ++   L  G+
Sbjct: 617  SETSIVRDIMSNEIKIFTDAGRSMRPLYIVENNRLLITKKHADMIENRQLTWSGLLETGV 676

Query: 638  IEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRN 691
            +EY+D  EE   +IA++  D   +       TH EI P  ILGV A +IP+P  NQSPRN
Sbjct: 677  VEYIDCEEEEICMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRN 736

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQ AMGKQAMG  + N   RMD+L ++L YPQ+PL+ TR++E + + +L AG N+ VA+
Sbjct: 737  TYQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAI 796

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS-DRILRPDRTGPGAER 810
            M Y+GY+ ED+++MN+SS+DRG  R +  + Y++  +KY  ST  +   +P  +G     
Sbjct: 797  MCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSS-EEKYLGSTVIESFTKPTASG----- 850

Query: 811  MQVVHHSNLLLLI------LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                   N L L       LD+DGL  PG  +  +D+ I + SP+E   +  +P   ++ 
Sbjct: 851  -------NFLNLKRGDYSKLDNDGLVEPGSRVLGDDIIIGRSSPVEADPN--NPQYTSEM 901

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
              R        P+ E  VVD V L  +  G    K  +R  R P++GDKF+SRHGQKG  
Sbjct: 902  NLRMDCSCCLRPN-ENGVVDNVLLTVNNKGCKFTKVKVRSIRVPQIGDKFASRHGQKGTI 960

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   + ED PF+  GI PD+IMNPH  PSRMT+G +IE L GK G   G     + F + 
Sbjct: 961  GMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKM 1020

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 T++ IS  L K  +S  G +  ++G TG  + + IF+GP YYQ+LKHMV DK+HA
Sbjct: 1021 -----TLDQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHA 1075

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  MLTRQPTEGR+R GGLR GEMERDC+I++GA+ ++ ERL   SD + V VC  
Sbjct: 1076 RARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNF 1135

Query: 1105 CGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            CGLL   N    +  C+ C N   IS + +PYACKLL+QEL +M I P+L L EA
Sbjct: 1136 CGLLSVANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLILTEA 1190


>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
 gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1267

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1262 (34%), Positives = 651/1262 (51%), Gaps = 165/1262 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F   +GLV Q +DSF+ FV T ++++V  N ++        S  D  I LR 
Sbjct: 24   DCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTLDQNNPPSSNDNPIALRR 83

Query: 83   KDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ----------- 125
             +++ G     +P+MT  DG ++ + P   RL ++TY++P+ + +               
Sbjct: 84   YEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQVAVERPVPLN 143

Query: 126  -------------GSHTEKTTMEKND--------------VVIGRIPIMLRSCRCVLYGK 158
                         G H  +   E  D              V +G++P+ML+S  C L   
Sbjct: 144  ELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGPAPERVYVGKLPMMLKSEYCFLKNC 203

Query: 159  DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK---------GNINA 209
            DE +L    ECP D GGYFII G+EKVL+ QE+ + N  I+   KK           I +
Sbjct: 204  DEDDLYGWNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKPANQAVSYLAEIRS 261

Query: 210  SVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            ++   +  + S  +   +KG          +   L    + IPI +V +A+G+ SD++++
Sbjct: 262  ALEKGSRLISSLQIKLYDKGDSGRGGFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDIL 321

Query: 261  QMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AF 316
              +     D +   +L P IEE     I  +E AL+++    KR    S   D+  + A 
Sbjct: 322  NHICYDRNDTQMLEMLKPCIEEA--FVIQDREVALDFIG---KRGNGTSLTRDKRIKYAR 376

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L+
Sbjct: 377  DIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLL 436

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF +LF+ + ++V + +   +     +  F+L+  +   +IT GL+ +L+TGN+ D K
Sbjct: 437  AKLFRNLFRRLTTDVYRYLQRCVEN---NREFNLTLGVKSTTITNGLKYSLATGNWGDQK 493

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 494  KAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 553

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM +VT      P++       +E LE    E L  PN+  V  NG+ +G
Sbjct: 554  QACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLE--EYEPLRAPNATKVFVNGVWVG 611

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD------- 608
             HR P      ++ LRR+  I   VS+    + R   I +D GRVCRPL++ D       
Sbjct: 612  VHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSPN 671

Query: 609  KGISRIKEHHMKELLD----------------GVRSFDDFLREGLIEYLDVNEENNALIA 652
            KG   + + H++ L D                G   F   + +G++EYLD  EE   +I 
Sbjct: 672  KGNLVLNKDHIRRLEDDQSLPSNMDKDEKVHHGYYGFQGLINDGVVEYLDAEEEETVMIT 731

Query: 653  LYEGDAT------------PD-------------------TTHIEIEPFTILGVIAGLIP 681
            +   D              PD                    TH EI P  ILG+ A +IP
Sbjct: 732  MTPEDLDISRQLQAGYQIRPDDSGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIP 791

Query: 682  YPHHNQ-------SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
            +P HNQ       SPRN YQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E
Sbjct: 792  FPDHNQANSVATKSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSME 851

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
             + + +L AGQNA VA+M YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   + 
Sbjct: 852  FLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNV 911

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             ++  +P R+     +             LDDDG+ APG  +   D+ I K +P+     
Sbjct: 912  VEQFEKPYRSDTLKLKQGTYEK-------LDDDGIVAPGVRVTGADIIIGKTAPIAPDSE 964

Query: 855  IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
             M   GQ    +     +      E+ +VD+V L ++  G   +K  +R T+ P++GDKF
Sbjct: 965  EM---GQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKF 1021

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKG  G    Q+D PF+  G+ PDLI+NPH  PSRMT+  +IE    K     G 
Sbjct: 1022 ASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGL 1081

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
                + F E      TV+S+S+ L  HG+   G +++Y G TG  + A +F+GP YYQ+L
Sbjct: 1082 EGDATPFTEV-----TVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRL 1136

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
            +HMV DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+I++GAS  + ERL   S
Sbjct: 1137 RHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVS 1196

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            D F V +C +CGL+     K+  G   C  CKN   IS + +PYA KLL QEL +MNI  
Sbjct: 1197 DAFRVHICDICGLMTPIA-KINTGSFECRPCKNKTKISQIHIPYAAKLLFQELAAMNIAT 1255

Query: 1153 RL 1154
            R+
Sbjct: 1256 RM 1257


>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
            112818]
          Length = 1258

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1257 (35%), Positives = 665/1257 (52%), Gaps = 163/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 23   DCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLR 82

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS------ 127
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I  + ++G       
Sbjct: 83   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 128  -----------------------HTE-KTTME----KNDVVIGRIPIMLRSCRCVLYGKD 159
                                   H E K TME    + ++ IG++PIML+S  C+L    
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++  + KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 263  KGSRILSQLSIKLLSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   ++E R   A
Sbjct: 323  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQEKRVRYA 374

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALATGNWGEQ 491

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 492  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 551

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM  +T      P+I       +E LE    E   +PNS  V  NG+ +
Sbjct: 552  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKVFVNGVWV 609

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +  +KEH  K              E  +    +D  ++ G+IEY+D  EE   +I 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 653  LY-----------------EGDATP--------------DTTHIEIEPFTILGVIAGLIP 681
            +                  E D T                 TH EI P  ILG+ A +IP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+    + +++ H +      +DDDG+ +PG  +   D+ I K SPL      +   GQ
Sbjct: 910  MRS----DTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEEL---GQ 959

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQ 920
               ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  RTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1018

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   + ED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R + G A
Sbjct: 1019 KGTIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA 1076

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1077 ----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V
Sbjct: 1133 DKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRV 1192

Query: 1100 QVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+     K+K G   C  C+N + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1193 HICDICGLMTPIA-KVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARM 1248


>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
 gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
          Length = 1206

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1205 (35%), Positives = 639/1205 (53%), Gaps = 109/1205 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV--------SGIDP----S 77
            D + ++  F   +GLV+Q LDSFN FVN  I++I+     IV         G++      
Sbjct: 25   DSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAHEEKE 84

Query: 78   IFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136
              ++F  V + +P +T  DG S  L P   RL ++TY AP+ V++   + +     T+E+
Sbjct: 85   YIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTRQADDTVEE 144

Query: 137  -----NDVVIGRIPIMLRSCRCVLY-GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
                 + V +G++PIML+S RC L+    E E   LGECP D GGYF+I G+EKVL+ QE
Sbjct: 145  KQETLSHVHLGKVPIMLKSERCNLHEAATEQEATNLGECPYDQGGYFVINGSEKVLIAQE 204

Query: 191  QLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIP 243
            +++ N V +    +         I + V  ST +  S +++ + KGK          +IP
Sbjct: 205  RMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQIP 264

Query: 244  -------IMVVMKAMGMESDQEVVQMV----GRDPRYSALLLPSIEECANLDIYTQEKAL 292
                   I ++ +A+G  SD+++++ +      DP     L  S+EE    ++ TQE+AL
Sbjct: 265  YIRAEFPIFILFRALGFVSDRDILEHIVYDLDSDPAMLEALRASVEEAQ--EVQTQEEAL 322

Query: 293  EYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
             YL GK + +  G+   DR   A ++L    L ++         K ++V  M+ R++   
Sbjct: 323  NYL-GK-RGTVTGASKADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLMLVA 380

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRF 408
            L +   DD+D+  NKRL+L G L++ LF  LF+ +  E+    Q+ VD            
Sbjct: 381  LGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMHAQRMVDA-------GKEI 433

Query: 409  DLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            ++   I    IT GL+ +L+TGN+  +  +  R G++QVLARL++  TL H+ RV+    
Sbjct: 434  NVLSAINEKIITRGLKYSLATGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRRVNSPIG 493

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  S WGM CP +TPEG+A GLVKN+ALM ++T      P+++       
Sbjct: 494  REGKLAKPRQLHNSLWGMFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNT 553

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ 588
            E L+ ++  ++       V  NG+ LG  R P      +R +RR       VS+  +   
Sbjct: 554  EALDEVTPADIAAATK--VFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVSIIYDGPL 611

Query: 589  RCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV-----RSFDDFLREGLIEYLDV 643
            + + I +D GR  RPL I +     + ++H++ L+  +      ++   +++GL+EY+D 
Sbjct: 612  KELRIFTDYGRTSRPLYIVEDNRLLVTKNHIRRLISPLPDEEEYAWPQLVQDGLVEYIDA 671

Query: 644  NEENNALIALY---------EGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
             EE   +IA+           G AT  T TH EI P  ILGV A +IP+P HNQSPRNTY
Sbjct: 672  EEEETTMIAMTIADLRNAREAGSATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTY 731

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            Q AMGKQAMG  A N   RMD+  ++L YPQ+PL+ TR ++ + + +L AG NA VA+M 
Sbjct: 732  QSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLKFRELPAGINAIVAIMC 791

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            YSGY+ ED++++N SS+DRGF R I  + Y    +K  + + + I  PD       +   
Sbjct: 792  YSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEEEKKAGSLSREEIEAPDPVVTAKMKHGT 851

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
                      LD DGL  PG  +   D+   K   L        PTG    R+     + 
Sbjct: 852  YDK-------LDADGLCPPGTRVSGEDIICGKTVTLPD-----DPTGAV-QRFTKKDASL 898

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
                 E  V+D+V L ++  G   +K  +R    P++GDKF+SRHGQKG CG     ED 
Sbjct: 899  ALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDM 958

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            PFS  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F +      TV++
Sbjct: 959  PFSAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVAALMGSEGDATPFTKV-----TVDN 1013

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            +S+ L   G+   G +++Y+G TG  L+A IF+ P YYQ+LKHMV  K+H+RG GP  +L
Sbjct: 1014 VSQMLHDLGYQRRGWEVMYNGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVL 1073

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
            TRQP EGRAR+GGLR GEMERDC+I++GA+  + ERL   SD + V VC   GL+   N 
Sbjct: 1074 TRQPAEGRARDGGLRFGEMERDCIISHGAAAFLKERLFDQSDAYRVHVCERSGLIAVANL 1133

Query: 1114 KLKAGICSTCKNGDNI----------------------SSMKLPYACKLLIQELQSMNIV 1151
            K +    +  K+G NI                        + +PYACKLL QEL +M I 
Sbjct: 1134 KKQQFTSTIYKDGSNIYQASYRRNPRWAAGGGYKRMWNKDVYVPYACKLLFQELMAMCIA 1193

Query: 1152 PRLKL 1156
            PR++ 
Sbjct: 1194 PRMQF 1198


>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
            127.97]
          Length = 1258

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1257 (35%), Positives = 664/1257 (52%), Gaps = 163/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 23   DCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLR 82

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS------ 127
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I  + ++G       
Sbjct: 83   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 128  -----------------------HTE-KTTME----KNDVVIGRIPIMLRSCRCVLYGKD 159
                                   H E K TME    + ++ IG++PIML+S  C+L    
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   ++E R   A
Sbjct: 323  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQEKRVRYA 374

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALATGNWGEQ 491

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 492  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 551

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM  +T      P+I       +E LE    E   +PNS  V  NG+ +
Sbjct: 552  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKVFVNGVWV 609

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +  +KEH  K              E  +    +D  ++ G+IEY+D  EE   +I 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 653  LY-----------------EGDATP--------------DTTHIEIEPFTILGVIAGLIP 681
            +                  E D T                 TH EI P  ILG+ A +IP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+    + +++ H +      +DDDG+ +PG  +   D+ I K SPL      +   GQ
Sbjct: 910  MRS----DTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEEL---GQ 959

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQ 920
               ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  RTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1018

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   + ED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R + G A
Sbjct: 1019 KGTIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA 1076

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1077 ----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V
Sbjct: 1133 DKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRV 1192

Query: 1100 QVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+     K+K G   C  C+N + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1193 HICDICGLMTPIA-KVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARM 1248


>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
 gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
          Length = 1257

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/1252 (35%), Positives = 656/1252 (52%), Gaps = 155/1252 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ FV++ ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTLDQTLPPADDEVDPVVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRERLIAD 143

Query: 123  -------------------YVQGSHTE--KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEA 161
                               Y+Q    E      ++  V IG++PIML+S  C+L    E 
Sbjct: 144  REDDETVPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKDLSEQ 203

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSS 214
             L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   
Sbjct: 204  ALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKG 263

Query: 215  TETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  
Sbjct: 264  SRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICY 323

Query: 266  DPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILR 320
            D   +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++
Sbjct: 324  DRNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQ 378

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF
Sbjct: 379  KELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 438

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKM 439
              LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+   
Sbjct: 439  RVLFTRVTRDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAAS 495

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             + G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACG
Sbjct: 496  SKAGVSQVLSRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 555

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALM ++T      P+I       +E LE    E    PN+  V  NG+ +G HR 
Sbjct: 556  LVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGVHRD 613

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GIS 612
            P    + M  LRR   I   VS+  + ++R   I +D GRVCRPL + D        G  
Sbjct: 614  PAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGSL 673

Query: 613  RIKEHHMKEL---------LDGVR------SFDDFLREGLIEYLDVNEENNALIA----- 652
             + + H+++L         LD          +D  ++ G++EY+D  EE + +I+     
Sbjct: 674  VLNKEHIRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEEHIMISMTPED 733

Query: 653  ------LYEGDATPD--------------------TTHIEIEPFTILGVIAGLIPYPHHN 686
                  L  G A P+                     TH EI P  ILGV A +IP+P HN
Sbjct: 734  LEISKQLQAGYALPEEELNDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHN 793

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQN
Sbjct: 794  QSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQN 853

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R+  
Sbjct: 854  AIVAIACYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYTDTEKMVGLTVVERFEKPMRSDT 913

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
               R             LD+DG+ APG  +   D+ I K +PL      +   GQ    +
Sbjct: 914  IGMRKGTYDK-------LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAH 963

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
                 +      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G
Sbjct: 964  TKLDVSTPLRSTENGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1022

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +
Sbjct: 1023 ITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA----T 1076

Query: 986  GHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
               D TV+S+S  L +HG+   G +++Y+G TG  + A +F+GP YYQ+L+HMV DK+HA
Sbjct: 1077 PFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKMVAQVFLGPTYYQRLRHMVDDKIHA 1136

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  
Sbjct: 1137 RARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDD 1196

Query: 1105 CGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            CGL+     KLK G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1197 CGLMTPIA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARM 1247


>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
 gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
          Length = 1252

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1255 (33%), Positives = 657/1255 (52%), Gaps = 167/1255 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             DP I 
Sbjct: 24   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIK 83

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE-----------Y 123
                ++F  V + +P+ T  DG +  L PH  RL ++TY+  +L +I             
Sbjct: 84   RRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQVV 143

Query: 124  VQGSHTE-----------KTTMEKNDV---------VIGRIPIMLRSCRCVLYGKDEAEL 163
            V+G   +           +   E+ DV          IG++P+MLRS  C L  + +  L
Sbjct: 144  VEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEAL 203

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTET 217
                ECP D GGYF+I G+EKVL+ QE+ + N V +   K+GN      I ++V   T  
Sbjct: 204  FAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTRL 263

Query: 218  VKSKTVIQME-------KGK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV- 263
            + S  +   +       +GK       Y +L    +++P+ +V +A+G+ SD+E++  + 
Sbjct: 264  ISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEEILSHIV 323

Query: 264  --GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PSIEE A   I  +E AL+++  +      G+    R+ R     RD
Sbjct: 324  YDRTDTQMLELLKPSIEEGAV--IQDRETALDFIAKR------GANQGTRD-RRLKFARD 374

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
            +      +  +    K  +   M+ R+++ +L +   DD+D+ G KRL+L+G LV+ LF 
Sbjct: 375  I------MQKDKTLAKPTFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 428

Query: 382  DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMH 440
             LF  +  +V K +   +     S+ F++   +    IT GL+ +L+TGN+ D K+    
Sbjct: 429  ILFLKLTKDVFKYLQRCVES---STDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASA 485

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
            + G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGL
Sbjct: 486  KAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGL 545

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRR 559
            VKNL+LM +V+   +  P+I     +   +++LL   ++  NP +  V  NG+ +G H +
Sbjct: 546  VKNLSLMCYVSVGSDATPIIDF---MSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQ 602

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR------ 613
             +    V+++LRR G +   +S+  + + R   I +D GRV RPL + +   ++      
Sbjct: 603  AQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQL 662

Query: 614  -----IKEHHMKELLDG--------------VRSFDDFLREGLIEYLDVNEENNALIALY 654
                 I    +KE LD                  +   +++G+IEYLD  EE  A+I   
Sbjct: 663  VFDREISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFS 722

Query: 655  EGD----------------------------ATPDT-----THIEIEPFTILGVIAGLIP 681
              D                              PD      TH EI P  ILG+ A +IP
Sbjct: 723  PEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIP 782

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L
Sbjct: 783  FPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFREL 842

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 843  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKP 902

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ
Sbjct: 903  TRA--DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQ 952

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
              + +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQK
Sbjct: 953  KTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQK 1012

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  G+ PDL++NPH  PSRMT+  ++E L  K G   G+    + F
Sbjct: 1013 GTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPF 1072

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+ IS+ L + G+   G +++Y+G TG  ++  +F+GP YYQ+L+HMV DK
Sbjct: 1073 TEV-----TVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDK 1127

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V V
Sbjct: 1128 IHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHV 1187

Query: 1102 CRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            C +CGL+      +K G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1188 CDICGLMSPI-ASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRM 1241


>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
 gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
          Length = 1255

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1250 (35%), Positives = 653/1250 (52%), Gaps = 153/1250 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++             DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSDDEDDPVVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRERLIAD 143

Query: 123  -------------------YVQGSHTE--KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEA 161
                               Y+Q    E      ++  V IG++PIML+S  C+L    E 
Sbjct: 144  RDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKDLSEQ 203

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSS 214
             L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   
Sbjct: 204  ALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKG 263

Query: 215  TETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  
Sbjct: 264  SRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICY 323

Query: 266  DPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILR 320
            D   +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++
Sbjct: 324  DRNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQ 378

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF
Sbjct: 379  KELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 438

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKM 439
              LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+   
Sbjct: 439  RVLFTRVTRDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAAS 495

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             + G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACG
Sbjct: 496  SKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 555

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALM ++T      P+I       +E LE    E    PN+  V  NG+ +G HR 
Sbjct: 556  LVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGVHRD 613

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GIS 612
            P    + M  LRR   I   VS+  + ++R   I +D GRVCRPL + D        G  
Sbjct: 614  PAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSL 673

Query: 613  RIKEHHMKEL---------LDG------VRSFDDFLREGLIEYLDVNEENNALIA----- 652
             + + H+++L         LD          +D  ++ G++EY+D  EE   +I      
Sbjct: 674  VLNKEHIRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPED 733

Query: 653  ------LYEGDATPD------------------TTHIEIEPFTILGVIAGLIPYPHHNQS 688
                  L  G A P+                   TH EI P  ILGV A +IP+P HNQS
Sbjct: 734  LEISKQLQAGYALPEEDDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQS 793

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
            PRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA 
Sbjct: 794  PRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 853

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA 808
            VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R+    
Sbjct: 854  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDTEKMVGLTVVERFEKPMRSDTIG 913

Query: 809  ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRS 868
             R             LD+DG+ APG  +   D+ I K +PL      +   GQ    +  
Sbjct: 914  MRKGTYDK-------LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAHTK 963

Query: 869  ARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
               +      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G  
Sbjct: 964  LDVSTPLRSTENGIVDQV-LVSTSNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGIT 1022

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
             +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +  
Sbjct: 1023 YRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TPF 1076

Query: 988  AD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
             D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR 
Sbjct: 1077 TDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARA 1136

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  CG
Sbjct: 1137 RGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCG 1196

Query: 1107 LLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            L+     KLK G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1197 LMTPIA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARM 1245


>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
          Length = 1219

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1187 (35%), Positives = 643/1187 (54%), Gaps = 99/1187 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------------RANDRIVSGID 75
            D ++++  F    GLV Q ++SFN F+   +++I+              R +D + S + 
Sbjct: 75   DSWKVIGSFFSTHGLVHQQIESFNDFITYRMQEIIDEHPPIEIKPQPRYRPDDDLESNV- 133

Query: 76   PSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEK 131
             +  L+F  + + +P +   DGV + + P   RL ++TYA+ I V+IE   Y++   T  
Sbjct: 134  -TYRLKFGQLSLNKPCVEEKDGVFKHIWPQEARLRNLTYASQIYVDIEQETYLKDETTGA 192

Query: 132  TTMEKND----VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
             T++       + +GR+P+ML+S  C   G  E +LA +GECP D GGYFI+ G E+VL+
Sbjct: 193  ETLQDKTTYPRIPLGRMPMMLKSTYCWTKGLSEEDLADVGECPYDQGGYFIVNGGERVLI 252

Query: 188  IQEQLSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQM--------------EKGK 230
             QE+++ N + +   K   K +  A + S  E  +  T   +                G+
Sbjct: 253  AQERMANNFIYVFKKKQPSKYSFVAEIRSQAEFSQGITPFSIMMKSSLGAPGSRFKSHGQ 312

Query: 231  MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYT 287
            +   +      IP+ ++ +A+G  +D++++Q +     D +   L+  ++EE +  D  T
Sbjct: 313  LVATIPYLRADIPVPILFRALGCVADRDILQRIVYDFEDKQMLNLMRATLEEAS--DYVT 370

Query: 288  QEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
            QE  L+++ GK +  T G+P   R   A  +LR   L +V     +   KC+++  M+ R
Sbjct: 371  QETCLDFI-GK-RGPTVGAPLETRIQYAKDLLRQHLLPHVGTEPGSEGKKCYFLGYMIHR 428

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR 407
            ++ + L +   DD+++ G KRL+L+G L++  F  LF+ M  + ++   I+  +      
Sbjct: 429  LLLSRLGRINEDDREHFGKKRLDLAGPLMASSFGTLFRKMAKDARR---ILQQQIDCGRA 485

Query: 408  FDLSQFI-VRDSITVGLERTLSTGNFDVKR-FKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
            FD++  I    +IT GL+  L TGN+   R  K+ R G++QVL RL+F   L H+ R++ 
Sbjct: 486  FDVAGAIRSATTITQGLQYQLLTGNWGRDREGKIVRTGVSQVLNRLTFASYLSHLRRLNT 545

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM +++       +      
Sbjct: 546  PLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSVAATINEFLSE 605

Query: 526  LGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVN 585
             G++ L+ +  E + +     +  NG  +G           + +LRR G I    S+  +
Sbjct: 606  WGMDSLDEVPPEVVKD--RVKIFINGTWVGCFDEADSLVRTLLELRRRGDISSETSIVRD 663

Query: 586  EKQRCVYIASDGGRVCRPLVIADKGIS-RIKEHHMKELLDGVRSFDDFLREGLIEYLDVN 644
               + V I +D GR  RPL I + G +  I + H+  + +   ++D  +  G+IEY+D  
Sbjct: 664  IVSQEVKIFTDAGRAMRPLFIVENGNTLAINKEHIAMIDNNECNWDGLVESGVIEYIDCE 723

Query: 645  EENNALIALYEGDATPDTT------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
            EE   +I ++  D   + T      H EI P  ILGV A +IP+P  NQSPRNTYQ AMG
Sbjct: 724  EEEMCMIGMFVDDLKANNTYCSTYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMG 783

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQAMG  A N   RMD+L ++L YPQ+PL+ TR++E + + +L AG NA VA+M Y+GY+
Sbjct: 784  KQAMGVYATNFNLRMDTLCHILYYPQKPLVCTRSMEFLRFRELPAGINAIVAIMCYTGYN 843

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSN 818
             ED+++MN+SS+DRG  R    + Y +  +KY  ST              ER +    +N
Sbjct: 844  QEDSLIMNQSSIDRGLFRSAFNRTYIS-EEKYVGSTI------------VERFERPGTAN 890

Query: 819  LLLL------ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            +L L       LD DGL  PG  +  +D+ I + S  +          + D R   +   
Sbjct: 891  ILGLKRGDYTKLDADGLVEPGSRVMGDDIIIGRTSTAD----------EEDMRQDCSCCL 940

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                +G   VVD V +  +  G    K  +R  R P++GDKF+SRHGQKG  G   + ED
Sbjct: 941  RANENG---VVDTVLVSVNAKGTKFAKVKVRSVRVPQIGDKFASRHGQKGTIGITYRTED 997

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             PF+  GI PD+IMNPH  PSRMT+G ++E L GK G  CG     + F +      TV+
Sbjct: 998  LPFTCEGIVPDIIMNPHAVPSRMTIGHLVECLIGKVGACCGMEGDATPFSKL-----TVQ 1052

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
             I+E L   G++ +G +  + G TG  + + IF+GP YYQ+LKHMV DK+HAR  GP  M
Sbjct: 1053 QIAERLFDCGYARHGNEAFHCGFTGQMITSRIFVGPTYYQRLKHMVEDKIHARSRGPSTM 1112

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQPTEGR+R GGLR GEMERDC+I++GA+ ++ ERL   SD + + VC  CGL    +
Sbjct: 1113 LTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRIHVCDNCGLCCIAD 1172

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
                +  C+ C N  NIS + +PYACKLLIQEL SM I P+L L  A
Sbjct: 1173 LNKSSFECTACDNKTNISQVAIPYACKLLIQELMSMAIYPKLVLTPA 1219


>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
 gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
          Length = 1258

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1257 (34%), Positives = 660/1257 (52%), Gaps = 163/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 23   DCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPGDDEQDPVVLR 82

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 83   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 123  -----------------------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
                                   + +   T +   E+ ++ IG++PIML+S  C+L    
Sbjct: 143  RDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 263  KGSRILSQLSIKLFAKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   ++E R   A
Sbjct: 323  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQEKRVRYA 374

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALATGNWGEQ 491

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 492  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 551

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM  +T      P+I       +E LE    E   +PNS  V  NG+ +
Sbjct: 552  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKVFVNGVWV 609

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +  +KEH  K              E  +    +D  ++ G++EY+D  EE   +I 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVVEYVDAEEEETIMIV 729

Query: 653  LYEGDA----------------TPDT---------------THIEIEPFTILGVIAGLIP 681
            +   D                 T D+               TH EI P  ILG+ A +IP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDSNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKP 909

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+    + +++ H +      +DDDG+ +PG  +   D+ I K SPL      +   GQ
Sbjct: 910  MRS----DTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEEL---GQ 959

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQ 920
               ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  RTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1018

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   + ED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R + G A
Sbjct: 1019 KGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA 1076

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1077 ----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V
Sbjct: 1133 DKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRV 1192

Query: 1100 QVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+     K+K G   C  C+N + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1193 HICDICGLMTPIA-KVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARM 1248


>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
 gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
          Length = 1258

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1257 (35%), Positives = 664/1257 (52%), Gaps = 163/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 23   DCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEHDPVVLR 82

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS------ 127
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I  + ++G       
Sbjct: 83   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 128  -----------------------HTE-KTTME----KNDVVIGRIPIMLRSCRCVLYGKD 159
                                   H E K TME    + ++ IG++PIML+S  C+L    
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   ++E R   A
Sbjct: 323  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQEKRVRYA 374

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALATGNWGEQ 491

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 492  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 551

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM  +T      P+I       +E LE    E   +PNS  V  NG+ +
Sbjct: 552  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKVFVNGVWV 609

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +  +KEH  K              E  +    +D  ++ G+IEY+D  EE   +I 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPADLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 653  LY-----------------EGDATP--------------DTTHIEIEPFTILGVIAGLIP 681
            +                  E D T                 TH EI P  ILG+ A +IP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+    + +++ H +      +DDDG+ +PG  +   D+ I K SPL      +   GQ
Sbjct: 910  MRS----DTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEEL---GQ 959

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQ 920
               ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  RTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1018

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   + ED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R + G A
Sbjct: 1019 KGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA 1076

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1077 ----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V
Sbjct: 1133 DKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRV 1192

Query: 1100 QVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+     K+K G   C  C+N + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1193 HICDICGLMTPIA-KVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASMNIAARM 1248


>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
 gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
          Length = 1258

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1257 (35%), Positives = 664/1257 (52%), Gaps = 163/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 23   DCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLR 82

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS------ 127
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I  + ++G       
Sbjct: 83   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 128  -----------------------HTE-KTTME----KNDVVIGRIPIMLRSCRCVLYGKD 159
                                   H E K TME    + ++ IG++PIML+S  C+L    
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 264  GRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +++L    P IEE     I  +E AL+++      S  GS P   ++E R   A
Sbjct: 323  CYDRNDTSMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQEKRVRYA 374

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALATGNWGEQ 491

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 492  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 551

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM  +T      P+I       +E LE    E   +PNS  V  NG+ +
Sbjct: 552  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKVFVNGVWV 609

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +  +KEH  K              E  +    +D  ++ G+IEY+D  EE   +I 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 653  LY-----------------EGDATP--------------DTTHIEIEPFTILGVIAGLIP 681
            +                  E D T                 TH EI P  ILG+ A +IP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQN  VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P
Sbjct: 850  PAGQNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+    + +++ H +      +DDDG+ +PG  +   D+ I K SPL      +   GQ
Sbjct: 910  MRS----DTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEEL---GQ 959

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQ 920
               ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  RTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1018

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   + ED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R + G A
Sbjct: 1019 KGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA 1076

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1077 ----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V
Sbjct: 1133 DKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRV 1192

Query: 1100 QVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+     K+K G   C  C+N + IS + +PYA KLL QEL SMNI  R+
Sbjct: 1193 HICDICGLMTPIA-KVKKGDFECRACRNRNKISQVHIPYAAKLLFQELASMNIAARM 1248


>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
          Length = 1255

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1250 (35%), Positives = 653/1250 (52%), Gaps = 153/1250 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++             DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEDDPVVLR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRERLIAD 143

Query: 123  -------------------YVQGSHTE--KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEA 161
                               Y+Q    E      ++  V IG++PIML+S  C+L    E 
Sbjct: 144  RDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKYCILKDLSEQ 203

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSS 214
             L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   
Sbjct: 204  ALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKG 263

Query: 215  TETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
            +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  
Sbjct: 264  SRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICY 323

Query: 266  DPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILR 320
            D   +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++
Sbjct: 324  DRNDTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQ 378

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF
Sbjct: 379  KELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 438

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKM 439
              LF  +  ++Q+ V   +     +    L+  I   ++T GL+  L+TGN+ + K+   
Sbjct: 439  RVLFTRVTRDLQRYVQRCVET---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAAS 495

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
             + G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACG
Sbjct: 496  SKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 555

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLALM ++T      P+I       +E LE    E    PN+  V  NG+ +G HR 
Sbjct: 556  LVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGVHRD 613

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GIS 612
            P    + M  LRR   I   VS+  + ++R   I +D GRVCRPL + D        G  
Sbjct: 614  PAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSL 673

Query: 613  RIKEHHMKEL---------LDG------VRSFDDFLREGLIEYLDVNEENNALIA----- 652
             + + H+++L         LD          +D  ++ G++EY+D  EE   +I      
Sbjct: 674  VLNKDHIRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPED 733

Query: 653  ------LYEGDATPD------------------TTHIEIEPFTILGVIAGLIPYPHHNQS 688
                  L  G A P+                   TH EI P  ILGV A +IP+P HNQS
Sbjct: 734  LEISKQLQAGYALPEEDDPNKRVRSVLSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQS 793

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
            PRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA 
Sbjct: 794  PRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAI 853

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA 808
            VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R+    
Sbjct: 854  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIG 913

Query: 809  ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRS 868
             R             LD+DG+ APG  +   D+ I K +PL      +   GQ    +  
Sbjct: 914  MRKGTYDK-------LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAHTK 963

Query: 869  ARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
               +      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G  
Sbjct: 964  LDVSTPLRSTENGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 1022

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
             +QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +  
Sbjct: 1023 YRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TPF 1076

Query: 988  AD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
             D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR 
Sbjct: 1077 TDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARA 1136

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  CG
Sbjct: 1137 RGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCG 1196

Query: 1107 LLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            L+     KLK G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1197 LMTPIA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARM 1245


>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
            bisporus H97]
          Length = 1183

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1167 (35%), Positives = 635/1167 (54%), Gaps = 108/1167 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV+Q LDSF+ FV   ++++V  N  ++       +G +  +  R+
Sbjct: 36   DCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHETDMTRRY 95

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +++ GQ     P++T  DG    + P   RL ++TY+AP+ + +               
Sbjct: 96   -EIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGREDPDTAG 154

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181
            E    +  E    +   V IG++PIMLRS  C+L G  + +L  L ECP D GGYFII G
Sbjct: 155  EIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIING 214

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   L
Sbjct: 215  SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSL 274

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDI 285
             N       ++K  IPI VV + +G+ SD+++++ +  D +  A +L  ++ C +    I
Sbjct: 275  GNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVI 333

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M+
Sbjct: 334  QDREVALDFIGNR--GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMI 391

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +      
Sbjct: 392  HRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---H 448

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
              F+L+  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +
Sbjct: 449  KEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCN 508

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I    
Sbjct: 509  TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLE 568

Query: 525  CLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
              G+E LE    E  H+ +    +F NG+ +G HR P      ++KLRR   I   VSV 
Sbjct: 569  EWGLESLE----ENAHSTSPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 624

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLREGL 637
             + +++ + I +D GRVCRPL I +     + + H++ L  G         ++  ++ G+
Sbjct: 625  RDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGV 684

Query: 638  IEYLDVNEENNALIALY-------------------EGDATPDT-----------THIEI 667
            IE LD  EE   +I++                    +GD  P             TH EI
Sbjct: 685  IELLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTHCEI 744

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILG+ A +IP+P HNQSPRNTYQ AM KQAMG    N L RMD++  +L YPQ+PL
Sbjct: 745  HPSMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFLIRMDTMANILYYPQKPL 804

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + 
Sbjct: 805  ATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLE 864

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +K      +   +P R      RM+   +       L+DDGL APG  ++  D+ I K +
Sbjct: 865  KKSGIQQLEEFEKPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTGVRGEDIIIGKTA 917

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P+      +    +T +R R      K    E  +VD+V + ++  G   +K  +R TR 
Sbjct: 918  PIPPDSEELGQRTRTHTR-RDVSTPLKST--EIGIVDQVLITTNSEGQKFVKVRVRATRI 974

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  K
Sbjct: 975  PQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSK 1034

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G     + F +      TVES+S  L + G+   G +++Y G TG  LQA I++G
Sbjct: 1035 VATLIGNEGDATPFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLG 1089

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + 
Sbjct: 1090 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1149

Query: 1088 ERLMVSSDPFEVQVCRVCGLLGYYNHK 1114
            ERL  +SD + + VC +CGL    N K
Sbjct: 1150 ERLFEASDAYRLHVCDICGLTAIANLK 1176


>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
 gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
          Length = 1138

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1175 (36%), Positives = 647/1175 (55%), Gaps = 102/1175 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV--------SGIDPSIFLR 81
            + + ++  F   +GLV+Q LDSFN FV   +++I+  N  I         + I+  I L 
Sbjct: 20   NNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISVKSIPTAGNSIEREIKLY 79

Query: 82   FKDVRIGQPSMT--VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-D 138
            F  + I  P +   +DG S K+ P+  RL D+TY   + ++++     +  +  + K   
Sbjct: 80   FGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYYENGIEVDVSKTIR 139

Query: 139  VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
            V  G +P+M++S  C L   ++ +  RLGECP D GGYFII G EKV++ QE+++ N V 
Sbjct: 140  VPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQERIATNMVH 199

Query: 199  I-------------DTDKKGNINASVTS--STETVKSKTVIQMEKGKMYLLLNQFVKKIP 243
            I             +      I + + S  S + VK+  VI+         +N   + IP
Sbjct: 200  IFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNLRVIRAS-------INLVKQDIP 252

Query: 244  IMVVMKAMGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR 301
            ++++ +A+G  SD+E++  +    D   +  LL S+EE +   I  Q  AL+++ GK + 
Sbjct: 253  VLIIFRALGFNSDKEILSYIQYDNDKELNEYLLNSLEEASC--IQDQLSALDFI-GK-RS 308

Query: 302  STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361
            +  GSP + R   A  IL   FL ++         K +++  M+ +++  +  K  +DD+
Sbjct: 309  APIGSPKSKRIDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGKRDVDDR 368

Query: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSIT 420
            D+ G KR++LSG L++ LF+ LFK +++E  K     L K   ++R F+L+  +    IT
Sbjct: 369  DHYGKKRMDLSGPLLANLFKVLFKKLLTETTK----YLQKCVENNREFNLTIGLKSSIIT 424

Query: 421  VGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRAL 479
             G +  L+TGN+  +   M  R G+ QVL+R +F+ TL H+ RV+   EK  K++ PR L
Sbjct: 425  QGFKYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLRRVNTPIEKEGKLAAPRQL 484

Query: 480  QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539
              + WGM+CP +TPEG ACGLVKNL+LM +++  +    +I +   LGVE LE     E+
Sbjct: 485  HNTHWGMICPIETPEGHACGLVKNLSLMAYISVGKSSNQIIEILEELGVERLE-----EI 539

Query: 540  HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
                   ++ NG  +G    P     +++K RR G+I   +S+  + K+  + I SD GR
Sbjct: 540  EYIYGTKILVNGAWIGVTSDPVRIVQILKKFRRHGEIDSEISIIFDIKENEIKINSDAGR 599

Query: 600  VCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD-- 657
             CRPL I +     + +  +++L +    +DD ++ G IE LD+ EE  +LIA+   D  
Sbjct: 600  PCRPLFIVENNELLVNKQDIEDLKNIKIKWDDLIKNGKIELLDIEEEEVSLIAMGLNDLK 659

Query: 658  -ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                  TH EI P  ILG+ A +IP+P HN SPRNTYQ AMGKQAMG  + N   RMD+L
Sbjct: 660  DTNKQYTHCEIHPAIILGITASVIPFPTHNPSPRNTYQSAMGKQAMGIYSTNFFKRMDTL 719

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
              +L YPQ+PL++T+++E + + +L +GQN  VA+  YSGY+ ED+I+MN++S+DRG  R
Sbjct: 720  SNILCYPQKPLVSTKSMEYIKFKELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFR 779

Query: 777  CIVVK--------KYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
              + +        KYT +N+K        I RP +                   IL +DG
Sbjct: 780  SFLFRTYSDQEKMKYTGVNEKICKIERSVIFRPKKNNYD---------------ILGNDG 824

Query: 829  LAAPGEIIKPNDVYINKESPL-----ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            +  PG  +  +DV I K +P+      T G+       T +  R   Q           +
Sbjct: 825  IVCPGTQVYGDDVIIGKMTPILDVEKSTPGNPFYLFKDTSTLIRKTEQGN---------I 875

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V + + K+G    K  +R  R P++GDKF+SRH QKGV G  ++QED PF+  G+ PD
Sbjct: 876  DKV-IVTTKDGYKFTKVKVRSMRIPQMGDKFASRHAQKGVVGITLKQEDMPFTSDGLIPD 934

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G + E L GK     G     + F   +    T++ IS+ L K+G+
Sbjct: 935  VIINPHAIPSRMTIGHLFEALLGKLTTLNGIEGDATPF---ANKPQTIDEISKELAKYGY 991

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G ++++SG TG  L++ IF+GP YYQ+LKHMV DK+HAR  GP  ++TRQP EGR+R
Sbjct: 992  QKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKLHARARGPLQIMTRQPVEGRSR 1051

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
             GGLR GEMERDC+I++GAS  + ERLM  SD +   VC  CGL+             T 
Sbjct: 1052 EGGLRFGEMERDCIISHGASAFLKERLMDVSDVYTCGVCDNCGLI--------CNNNCTG 1103

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             N   IS++ +PYA KLLIQELQ MNI  R++  E
Sbjct: 1104 CNNSTISNINIPYAFKLLIQELQGMNIFMRIQTQE 1138


>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
            higginsianum]
          Length = 1258

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1252 (34%), Positives = 664/1252 (53%), Gaps = 154/1252 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-------VSGIDPSIFLRF 82
            D + ++  F + +GLV Q +DSF+ F ++ +++++    +I       +S  D  I LR 
Sbjct: 24   DCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALRR 83

Query: 83   KDVRIG-----QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +V+ G     +PS+T  DG    L P+ CR  ++TYA+P+ V I               
Sbjct: 84   YEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPLN 143

Query: 122  ---EYVQ------------------------GSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
               E  Q                        G+   K+   K+ + IGR+PIM++S  C 
Sbjct: 144  ELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKICH 203

Query: 155  LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-------- 206
            L  + E +L  L ECP D GGYFII G+EKVL+ QE+ + N  I+   KK          
Sbjct: 204  LSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKAQPSPYSYTA 261

Query: 207  -INASVTSSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESD 256
             I +++   +  + S  +    KG          ++  L      +PI +V +A+G+ SD
Sbjct: 262  EIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKADLPIAIVFRALGVVSD 321

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D   S +L    P IEE     I  +E AL+++ GK + S    P   R  
Sbjct: 322  EDILNHICYDRNDSQMLEMLRPCIEEA--FCIQDREVALDFI-GK-RGSNHNIPREKRVR 377

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G
Sbjct: 378  TAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAG 437

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF 432
             L++ LF ++ + M  E+       L +   S+R F L+  +   +++ GL+ +L+TGN+
Sbjct: 438  PLLAKLFRNIVRRMNQELSGH----LKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNW 493

Query: 433  -DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
             D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +
Sbjct: 494  GDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 553

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEG+ACGLVKNL+LM +V+      P+I      G+E LE    E L  PN+  V  NG
Sbjct: 554  TPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE--EYEPLRYPNATKVFLNG 611

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
            + +G H+ P+     ++  RR   I   VS+  + + R   I SD GRV RP+ + ++G 
Sbjct: 612  VWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQGA 671

Query: 612  SRI--------KEHHMKELLDGVR----------SFDDFLREGLIEYLDVNEENNALIAL 653
            + I        ++  + E+ D             +++     G+IEYLD  EE  A+I +
Sbjct: 672  NGIVPQGSLVLQKATVNEMRDQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICM 731

Query: 654  YEGD---------------------------ATPDT---THIEIEPFTILGVIAGLIPYP 683
               D                             P T   TH EI P  +LG+ A +IP+P
Sbjct: 732  TPEDLEIYRLQKQGQVVEDNTDGPNSRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFP 791

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L A
Sbjct: 792  DHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPA 851

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R
Sbjct: 852  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFR 911

Query: 804  TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 863
            +    + +++ H +      LDDDG+ APG  +   D+ I K SP+    + +   GQ  
Sbjct: 912  S----DTLRLKHGT---YDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAEL---GQRT 961

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
            +++     +      E  +VD+V + ++++G   +K  +R T+ P++GDKF+SRHGQKG 
Sbjct: 962  TQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGT 1021

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     + F +
Sbjct: 1022 IGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTD 1081

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
                  TV+S+S+ L   G+   G +++Y+G TG  L+A +F GP YYQ+L+HMV DK+H
Sbjct: 1082 V-----TVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIH 1136

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V VC 
Sbjct: 1137 ARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCE 1196

Query: 1104 VCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1197 ICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1248


>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            GT1]
 gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1259

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1196 (36%), Positives = 648/1196 (54%), Gaps = 96/1196 (8%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND----------RIVSGIDPSIFLR 81
            + ++  F    GLV Q L+SFN FV+  I++I+  +           R    ++ ++  R
Sbjct: 92   WAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEVESNVIYR 151

Query: 82   FK--DVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK-- 136
             K   + + +PS+   +G+S+ L P+  R  ++TY++P+ V++E    +   +T  E+  
Sbjct: 152  LKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYTVDPETGAERLV 211

Query: 137  -----NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                 + V++GRIP+ML+S  C      E +LA +GEC  D GGYFII G EKVL+ QE+
Sbjct: 212  DQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIINGGEKVLVAQER 271

Query: 192  LSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQMEK---------------GKMYL 233
            ++ N V +   K   K    A V S  E +++ +   ++K               G++  
Sbjct: 272  MASNFVYVFQKKQPSKFGWVAEVRSQKEGMQATSGFAVKKRSRTGGEGRKGGRPGGQIVA 331

Query: 234  LLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEK 290
             L     +IPI+++ +A+G  SD++++  V    +DP+  AL+ PS+EE    D  +Q+ 
Sbjct: 332  ALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLIALMKPSLEE--GFDYSSQDV 389

Query: 291  ALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVE 350
             L+++ GK +  T G+    R   A  +LR   L +V         K FY+  M+ R++ 
Sbjct: 390  CLDFI-GK-RGPTVGAQREKRIQYARELLRKEVLPHVGTEVGCENKKAFYIGYMVHRLLL 447

Query: 351  AMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL 410
            A L +   DD+D+ G KRL+++G L++  F  L++ MI +V++   I+  +      FD+
Sbjct: 448  ADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKDVRR---ILQRQVDHGKSFDV 504

Query: 411  SQFIVRDS-ITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFE 468
            +  I   S IT GL+  ++TGN+   K  K+ R G+ QVL RL+F   L H+ R++    
Sbjct: 505  AGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRLTFASALSHLRRLNTPLG 564

Query: 469  KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGV 528
            +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM+ ++       +       G+
Sbjct: 565  REGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDISVGSATNTVHEFLVEWGL 624

Query: 529  EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ 588
            + LE ++ + +       V  NG  +G           +R+LRR   I    S+  +   
Sbjct: 625  DPLEEMTPDVIKE--RVKVFVNGSWVGCFDEADVLCQTLRQLRRRCDISSETSIVRDLVN 682

Query: 589  RCVYIASDGGRVCRPLVIADKGISRI--KEHHMKELL---DGVRSFDDFLREGLIEYLDV 643
            R V I +D GR  RPL + D+G   +  K  H++EL       +S+   + +G+IE++D 
Sbjct: 683  REVKIFTDAGRAMRPLFVVDEGTRDLVMKRCHLEELQRRGKDEKSWGYLMEKGIIEFVDC 742

Query: 644  NEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAM 697
             EE   +IA++  D   +       TH EI P  ILGV A +IP+P HNQSPRN YQ AM
Sbjct: 743  EEEETCMIAMFVEDIRSEKRQAFPYTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAM 802

Query: 698  GKQAMG--NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 755
            GKQAMG    +FN   RMD+L +LL YPQ+PL+ TR +E + + +L AG NA VA++ YS
Sbjct: 803  GKQAMGVYTSSFNH--RMDTLAHLLYYPQKPLVCTRAMEFLRFRELPAGINAIVAILCYS 860

Query: 756  GYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVH 815
            GY+ ED+++M++SS+DRG  R +  + Y +  ++   S       P    P  E +Q + 
Sbjct: 861  GYNQEDSLIMSQSSIDRGLFRSVFYRTYCS-EERQQGSLMVESFEP----PSIEHVQGMK 915

Query: 816  HSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL------------ETRGSIMSPTGQTD 863
              +     LD DGL  PG  +  +DV I K SPL               G + SP  +  
Sbjct: 916  RGDYSK--LDADGLVEPGSRVLGDDVIIGKTSPLFDDDTGMPGGAGAGPGGVPSPFAK-- 971

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
             R R      +    ET VVD+V L  +  G    K  +R  R P+ GDKF+SRHGQKG 
Sbjct: 972  -RKRDCSLCLR--SSETGVVDQVMLSVNNRGSRFTKVKVRSVRIPQTGDKFASRHGQKGT 1028

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G   + ED PF+E GI PDLIMNPH  PSRMT+G ++E L GK     G     + F  
Sbjct: 1029 IGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTAAIFGGEGDATPF-- 1086

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
             +G+A  V  IS  L   G+   G + +Y G TG  L + IF GP YYQ+LKHMV DK+H
Sbjct: 1087 -NGYA--VLDISNRLHSLGYERFGNERLYHGHTGRHLPSLIFFGPTYYQRLKHMVDDKIH 1143

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GP  MLTRQP EG++R GGLR GEMERDC+I++GA+ ++ ERL   SD + V VC 
Sbjct: 1144 ARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHGAAHMLKERLFEQSDAYRVHVCD 1203

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            +CGL+   +       C  C N   IS + +PYACKLL+QEL +M I PRL L  A
Sbjct: 1204 ICGLVCTADLSRGNFECKLCDNKSRISQICIPYACKLLLQELMAMCIYPRLVLQVA 1259


>gi|408402778|ref|YP_006860761.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
            gargensis Ga9.2]
 gi|300521500|gb|ADK25961.1| RNA polymerase B [Candidatus Nitrososphaera gargensis]
 gi|408363374|gb|AFU57104.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
            gargensis Ga9.2]
          Length = 1116

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/1149 (34%), Positives = 629/1149 (54%), Gaps = 51/1149 (4%)

Query: 25   VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFK 83
            +++ ++ + ++ + L+  G+ +QHL+S+N F+  G++ I+     I +   +    ++  
Sbjct: 2    IENSIEMWPIINDILRREGVARQHLNSYNEFMERGLQSIIDEVGEIEIETAEYPYKIKLG 61

Query: 84   DVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIG 142
             +++ QP  M +DG    + P   RL ++TYA+P+++    V+    +   +E   + IG
Sbjct: 62   KIKLQQPRIMELDGSITHVAPMEARLRNLTYASPVMLECSVVE----DGKILESRFIHIG 117

Query: 143  RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
             +P+M++S  C+L+   E++L   GE P DPGGYFII G+E+V++  E LS N++I+D +
Sbjct: 118  DMPVMVKSNTCILHNLPESKLIEFGEDPRDPGGYFIINGSERVIVGLEDLSYNKIIVDAE 177

Query: 203  KKGNI---NASVTSSTETVKSKTVIQME-KGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
            +        A V SS    ++K  + M   G +   +      IP++ +++A+G+ESD++
Sbjct: 178  EATGTLLYKAKVYSSIVGYRAKLELVMRPDGSIVTKIPGSPVDIPLITLIRALGLESDKD 237

Query: 259  VVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSI 318
            +   V  +      L PS E+    D+ T   A+ Y+    KR   G     +  RA ++
Sbjct: 238  IADSVSLNETIQDELEPSFEKAG--DVNTSRDAIVYIS---KRIAPGMLEEFQIKRAETL 292

Query: 319  LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            L    L ++  + +N   K  ++     +++E  L     DDKD+ GNK ++ +GQ+++ 
Sbjct: 293  LDWGLLPHIGKNPDNRHEKALFLGEAASKLIELKLGWIDADDKDHYGNKVIKFAGQMLAD 352

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVG-LERTLSTGNFDVKRF 437
            LF   F+ +I +++      L +  +    +     VR  I    L   ++TGN+   R 
Sbjct: 353  LFRTAFRNLIRDMKYQ----LERSGQKRGINAVAAAVRPGIVSDKLNNAIATGNWGRGRV 408

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
                 G+TQ+L R +++ T+ H+ R+     +S+     R L  + +G +CP +TPEG  
Sbjct: 409  -----GVTQLLDRTNYMSTISHLRRIQSPLSRSQPNFEARDLHATHFGRICPAETPEGSN 463

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLAL   ++ + +   +    Y LGV+++E     E    +   V  +G ++G  
Sbjct: 464  CGLVKNLALSAIISVNVQSAEVTEKLYELGVQNVE--DAREDLRESGTRVFVDGRLIGYV 521

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ-----RCVYIASDGGRVCRPLVIADKGIS 612
             + +  +D +R +RR+GKI   V +++   Q     + +YI+ + GRV RPLV+   G  
Sbjct: 522  EKGEHLSDTLRSMRRSGKIHPHVGIYLYSSQNENATKRLYISCNAGRVLRPLVVLRDGKP 581

Query: 613  RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
             +    ++++     S++D L  G+IE +D NEE N  +A+      P  TH+EI P  I
Sbjct: 582  LVTNEVIEKVSKKFLSWNDLLYMGVIELVDANEEENCYVAIDPKKLEPKHTHLEIFPSAI 641

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LGV A +IPYP HNQSPRNTY+ AM KQ++G              + ++YPQ P+++T+ 
Sbjct: 642  LGVGASIIPYPEHNQSPRNTYESAMAKQSLGFSTPLMNASTYVRQHFMLYPQTPVVSTKA 701

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            I L+G +    GQNA VAV+ + GY+IEDA+V NKSS+DRG GR    + Y A  ++Y  
Sbjct: 702  INLLGLEDRPTGQNAVVAVLPFEGYNIEDAVVFNKSSVDRGLGRTFFYRIYEAEAKQYPG 761

Query: 793  STSD--RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
               D   + +PD    G       +       +L+ DG      ++   D+ I + SP  
Sbjct: 762  GMKDNFELPQPDANIRG-------YRGEKAYRLLEQDGAIMHEAVVNGGDILIGRTSP-- 812

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
                 M    + + +    R T  G    E  VVD V +     G    K  +R  R PE
Sbjct: 813  --PRFMEEYKEFEVKGPYRRDTSVGVRPSENGVVDTVIVTQSVEGGKMYKIRVRDMRIPE 870

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKF+SRHGQKGV G +V QED P++E G+ PD+++NPH FPSRMTVG+ +E LGGKA 
Sbjct: 871  IGDKFASRHGQKGVVGMLVNQEDVPYTEDGVVPDIMINPHAFPSRMTVGQFMESLGGKAA 930

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
               GR   GSAF    G     + I   + ++GF Y GK+ +Y G TG    A +++G +
Sbjct: 931  SLRGRIVDGSAFLGEKG-----DDIKTAMEQYGFKYTGKETMYDGRTGRKFPADVYIGVV 985

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQKL HMV DK+H+R  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +R
Sbjct: 986  YYQKLHHMVADKIHSRARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMMLKDR 1045

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L+  SD  EV VC  CGLL YY+ K +  IC  C     ISS+ + YA KLL+QE+ S+N
Sbjct: 1046 LLEESDKAEVNVCERCGLLAYYDVKQRRYICRVCGEKAKISSVVIAYAFKLLLQEMMSLN 1105

Query: 1150 IVPRLKLAE 1158
            + PRL + E
Sbjct: 1106 VAPRLLVKE 1114


>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
            nidulans FGSC A4]
          Length = 1252

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1246 (34%), Positives = 651/1246 (52%), Gaps = 148/1246 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F   +GLV Q LDSF+ F+++ ++++V    ++            +DP +  
Sbjct: 24   DCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSEDEVDPVVVR 83

Query: 80   ---LRFKDVRIGQP-SMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
               L+F  V + +P +M  DG +  + PH  RL +MTYA+P+ + I+       E+   +
Sbjct: 84   RYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKKKIMEGRERMVGD 143

Query: 136  KND-------------------------------VVIGRIPIMLRSCRCVLYGKDEAELA 164
            ++D                               V IG++PIML+S  C+L    E  L 
Sbjct: 144  RDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHIGKMPIMLKSKYCLLRDLGEQALY 203

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTET 217
               ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   +  
Sbjct: 204  DWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRL 263

Query: 218  VKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPR 268
            +   ++    KG          +   L      IPI++V +A+G+ SD++++  +  D  
Sbjct: 264  LSQLSLKLFGKGDSAKGGFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRN 323

Query: 269  YS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRDVF 323
             +    +L P IEE     I  +E AL+++    KR +  S  N +R  R A  I++   
Sbjct: 324  DTPMLEMLKPCIEE--GFVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQKEL 378

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF  L
Sbjct: 379  LPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVL 438

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRK 442
            F  +  ++Q+ V   +          L+  +   ++T GL   L+TGN+ + K+    + 
Sbjct: 439  FTRVTRDLQRYVQRCVES---DREIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKA 495

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++QVL+R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVK
Sbjct: 496  GVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 555

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            NLALM ++T      P+I       +E LE    E    PN+  V  NG+ +G HR+P  
Sbjct: 556  NLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGVHRQPSH 613

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISRIK 615
              + M+ LRR   I   VS+  + ++R   I +D GRVCRPL + D        G   + 
Sbjct: 614  LVETMQALRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLN 673

Query: 616  EHHMKELLDGVR---------------SFDDFLREGLIEYLDVNEENNALIA-------- 652
            + H+++L +                   +D  ++ G++EY+D  EE   +I         
Sbjct: 674  KEHIRKLEEDKELPPDMDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEI 733

Query: 653  ---LYEGDATPD------------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
               L  G A P+                   TH EI P  ILGV A +IP+P HNQSPRN
Sbjct: 734  SKQLQAGYALPEEQDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRN 793

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA VA+
Sbjct: 794  TYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAI 853

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM 811
              YSGY+ ED+++MN+SS+DRG  R +  + Y+   +    +  +R  +P R+     R 
Sbjct: 854  ACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRK 913

Query: 812  QVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQ 871
                        LD+DG+  PG  +   D+ I K +PL      +   GQ    +     
Sbjct: 914  GTYDK-------LDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEEL---GQRTKNHTKLDV 963

Query: 872  TYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 931
            +      E  +VD+V + +  +    +K  +R T+ P++GDKF+SRHGQKG  G   +QE
Sbjct: 964  STPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQE 1023

Query: 932  DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-T 990
            D PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +   D T
Sbjct: 1024 DMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TPFTDVT 1077

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP 
Sbjct: 1078 VDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPT 1137

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  CGL+  
Sbjct: 1138 QILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTP 1197

Query: 1111 YNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               KLK G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1198 IA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNISARM 1242


>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
 gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
          Length = 1222

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1231 (34%), Positives = 661/1231 (53%), Gaps = 133/1231 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN---------DRIVSGIDPS--- 77
            D + +L  F K   LV+Q LDSFN F+   ++ I+            D+  S        
Sbjct: 14   DMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKFKSSETKKSLK 73

Query: 78   IFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME- 135
            + LRF  + + +P+ +  +G +  L P+  RL ++TY++P+  +I  +  + TE+ T E 
Sbjct: 74   LILRFGQLHLSKPTFIEENGTTHTLLPNEARLRNLTYSSPLYCDISTITLNITEELTGEI 133

Query: 136  -----KND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
                 K+D   +++GRIPIM++S  CVL      +L R+GECP+DPGGYFII G+EKV++
Sbjct: 134  KENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGGYFIINGSEKVIV 193

Query: 188  IQEQLSKNRVIIDTDKKGNINAS------------------------VTSSTETVKSKTV 223
             QEQL+ N V I + K+   N+S                         + S  TVK    
Sbjct: 194  GQEQLAWNYVYIFSKKETTKNSSKLYFYTKKNLLYFAECRSVAEFGRWSPSLLTVKVCIT 253

Query: 224  IQMEKGK------------------MYL--LLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
            +  +K K                  +YL  +L  F K IP+  + KA+G E++ E+++ +
Sbjct: 254  VFPKKNKINKQSSSSTNSALHFYGGLYLRAILPLFKKDIPVTWIFKALGFENETEILRHI 313

Query: 264  GRDPRYSALL-----------LPSIEECANLD-IYTQEKALEYLEGKVKRSTFGSPPNDR 311
              +     L+           L + E  +N+  I  QE AL  +   + R       + R
Sbjct: 314  CYNDEDEELIESIRYSLEDDKLMASETFSNISSILDQETALAAIGQHISRGA----QSLR 369

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A+  L+  FL +V +       K F+   ++ +++   + K A DD+D+ G+KRL++
Sbjct: 370  IKHAYETLQKEFLPHVGIGQGFELRKGFFFGYIINKLMATQIGKRATDDRDHYGHKRLDV 429

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVRDSITVGLERTLSTG 430
            +G L+S+LF  L   +I +++ ++     K +    F+ +S FI    +T G++  L+TG
Sbjct: 430  AGPLLSVLFRQLLGKVIKDLRTSLQ---RKSNLGKNFNQISDFIKPSFLTTGIQYALATG 486

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+   + +  R G++QVL RLSF  TL H+ R++    K   ++ PR L  S WG++CP 
Sbjct: 487  NWGTDK-QASRTGVSQVLNRLSFSSTLSHLRRLNSPSGKDGNLTKPRQLHNSHWGLICPA 545

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG +CGLV+NLAL   VT      P++       +E+L  +  E+L    S+ +  N
Sbjct: 546  ETPEGHSCGLVRNLALSAFVTIGSSTLPIMEFLEEFKIENLSDVKLEKLKF--SYKIFVN 603

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G  +G H +P      +RK RR G + E +S+  + K++ + I++D GR+CRPL++ ++ 
Sbjct: 604  GCWIGIHDKPLNLVKNLRKGRRLGFLREEISISFDIKEKEIRISTDSGRICRPLIVLNEK 663

Query: 611  ISR-------------IKEHHMKELL-DGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
            +S+             +K+ H+ ++  D   SF D L+EG++E++D  EE   LI+++  
Sbjct: 664  LSKNTNGTEIKTFLPLLKKSHLSKIKNDPSFSFHDLLKEGIVEFIDAEEEEICLISMFLK 723

Query: 657  DA--------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
            +           + TH EI P  ILGV    IP+  HNQSPRNTYQ AMGKQA+G  + N
Sbjct: 724  ETFQKKFRSLNIEYTHCEIHPSLILGVCGSFIPFSDHNQSPRNTYQAAMGKQAIGINSLN 783

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD++ ++L YPQ PL+ TR ++ + Y     G N+ VA+  Y GY+ ED+I+M++ 
Sbjct: 784  FQFRMDTMAHILYYPQTPLVVTRAMKFMNYKNFPNGINSIVAIACYGGYNQEDSIIMSQD 843

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRP---DRTGPGAERMQVVHHSNLLLLILD 825
            ++DRG  R +  + Y    +       +    P   D  G      Q           LD
Sbjct: 844  AIDRGLFRSVFYRCYRDEEKTKFGGLKEIFEIPKFEDCIGCKTGSYQK----------LD 893

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETR--GSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
             DGL + G  +  +D+ I K  P +     S ++P  +T    + A    +    E+ VV
Sbjct: 894  LDGLVSEGTRVSGDDIIIGKTVPYDFSKIKSSLAPLEKTLKFKKDASTAARS--FESGVV 951

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V + +   G   +K  IR  R P++GDKF+SRHGQKG+ G + +Q D PF++ GI PD
Sbjct: 952  DKVMIGTSDLGTKLVKIRIRSVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTKDGIIPD 1011

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +IMNPH  PSRMT+G ++E L  K     G    GS F        TVE IS+ L    F
Sbjct: 1012 IIMNPHAIPSRMTIGHLLEGLLSKVSALGGMEGDGSPFCNI-----TVEKISKKLESLNF 1066

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
              NG +++ +G TG  L A IF+GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R
Sbjct: 1067 EKNGWEIMRNGETGNNLNAMIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSR 1126

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR GEMERDC++++GAS+ + +RLM  SD F + +C +CGL+   N K +   C +C
Sbjct: 1127 DGGLRFGEMERDCMMSHGASIFLKDRLMDQSDAFSIFLCDLCGLIAIANPKKRIFECRSC 1186

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             N ++IS +K+PYACKLL QEL +M I PR+
Sbjct: 1187 LNRNSISLVKIPYACKLLFQELMAMAIAPRM 1217


>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
          Length = 1202

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1195 (35%), Positives = 650/1195 (54%), Gaps = 99/1195 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------------RANDRIVSGID 75
            D + ++  F K  GLV Q ++SF+ FV   +++IV              R  D I   + 
Sbjct: 42   DSWTVISSFFKTHGLVHQQIESFDDFVTYRMQEIVDEYPPIEIRPQPQYRPEDEIEVNV- 100

Query: 76   PSIF-LRFKDVRIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIE---YV----QG 126
              I+ L+F  + + +PS+   +GV++ + P   RL ++TY++ I V+I+   Y+    +G
Sbjct: 101  --IYKLKFGQLSLNRPSVDEKEGVTKHIWPQEARLRNLTYSSQIYVDIDQEIYIYDEAKG 158

Query: 127  SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
              T +       + +G+IP+ML+S  C      E +LA +GECP D GGYFI+ G E+VL
Sbjct: 159  QETLQDRTSYPRISLGKIPMMLKSMYCWTRNVSEDDLADIGECPYDQGGYFIVGGGERVL 218

Query: 187  LIQEQLSKNRVIIDTDK---KGNINASVTSSTE----------TVKSKTVIQMEKGKMYL 233
            + QE+++ N + +   K   K +  A + S  E           +K+K       G  + 
Sbjct: 219  IAQERMANNFIYVFKKKQPSKFSWVAEIRSQMEYSQGTSAFSIKMKAKQATANVIGNRFR 278

Query: 234  LLNQFVKK-------IPIMVVMKAMGMESDQEVVQMVGRD---PRYSALLLPSIEECANL 283
              +Q V         IP+ ++ +A+G  +D++++Q +  D    +   L+ P++E+   L
Sbjct: 279  SYDQLVATLPYIRTDIPVAILFRALGCVADKDILQRIAYDFDDKQMLNLMKPTLEDA--L 336

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
            D  TQ+  L+++ GK +  T G+P + R   A  +LR   L +V         KC+++  
Sbjct: 337  DFTTQDACLDFI-GK-RGPTVGAPRDKRIQYAKDLLRKEVLPHVGTELGVESKKCYFIGY 394

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++ A L +   DD+D+ G KRL+++G L++  F  LF+ M  + ++   I+  +  
Sbjct: 395  MVHRLLLAKLGRINQDDRDHFGKKRLDMAGPLMASSFGTLFRKMAKDAKR---ILQHQID 451

Query: 404  RSSRFDLSQFIVRDS-ITVGLERTLSTGNFDVKR-FKMHRKGMTQVLARLSFIGTLGHMT 461
                FD++  I   S IT GL+  L TGN+   R  K+ R G++QVL RL+F   L H+ 
Sbjct: 452  CGRTFDVAGAIRSASQITQGLQYQLLTGNWGKDRDGKVVRTGVSQVLNRLTFASCLSHLR 511

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R++    +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM  ++       +  
Sbjct: 512  RLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCSISVGGASSTICE 571

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
            L   LG++ L+ +  E + +     V  NG  +G         + +   RR   I    S
Sbjct: 572  LLTELGMDSLDEVPPEVIKD--RVKVFINGTWIGCFDEADNLVNTLLHFRRRCDISHETS 629

Query: 582  VFVNEKQRCVYIASDGGRVCRPL-VIADKGISRIKEHHMKELLDG----------VRSFD 630
            +      + V I +D GR  RPL V+ D     +K  H++++ DG            +++
Sbjct: 630  IIKEIVSKEVKIFTDAGRAMRPLLVVHDGNRLALKRSHVEKIRDGSYINECSSENTSAWN 689

Query: 631  DFLREGLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPH 684
              +  G++EY+D  EE   +++++  D   ++      TH EI P  ILGV A +IP+P 
Sbjct: 690  WLVESGVVEYIDCEEEEMCMVSMFVQDLHSNSNYCSTYTHCEIHPCMILGVCASIIPFPD 749

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
             NQSPRNTYQ AMGKQAMG  + N   RMD+L +LL YPQ+PL+ TR +E + + +L AG
Sbjct: 750  QNQSPRNTYQSAMGKQAMGVYSSNFNLRMDTLSHLLYYPQKPLVCTRAMEFLRFRELPAG 809

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
             NA VA+M YSGY+ ED+++MN+SS+DRG  R +  + Y +  ++  + T ++  RP+  
Sbjct: 810  INAIVAIMCYSGYNQEDSLIMNQSSIDRGLFRSVFNRTYVSEEKQQGSVTIEKFERPNPQ 869

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                  M+   +S      LD DGL  PG  +  +DV I + SP      +      +  
Sbjct: 870  FVAG--MKRGDYSK-----LDSDGLVEPGSRVLGDDVIIGRISPTLPNQDVAPKRDCSLC 922

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
              RS          E  VV  V L  +  G    K  +R  R P++GDKF+SRHGQKG  
Sbjct: 923  LRRS----------ENGVVHSVLLSVNSKGSRFCKVKVRSVRIPQIGDKFASRHGQKGTI 972

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   + ED PF+ +GI PD+IMNPH  PSRMT+G ++E L GK G   G     + F   
Sbjct: 973  GITYRMEDMPFTCQGIVPDIIMNPHAVPSRMTIGHLVECLVGKVGAIGGLEGDATPFS-- 1030

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
               + TV+ I+  L + G+  +G + +Y+G TG  L++ IF+GP YYQ+LKHMV DK+HA
Sbjct: 1031 ---SLTVKEIASKLHELGYERHGNEALYNGYTGRLLKSKIFIGPTYYQRLKHMVEDKIHA 1087

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  MLTRQPTEGR+R+GGLR GEMERDC+I++GA+ ++ ERL   SD + V VC +
Sbjct: 1088 RARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKVLKERLFDQSDAYRVHVCDM 1147

Query: 1105 CGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            CGL+   +    +  CS C N  NIS + +PYACKLL+QEL SM I P+L L  A
Sbjct: 1148 CGLIVIADLNRGSFECSACDNKTNISQVSIPYACKLLLQELMSMAIYPKLTLGVA 1202


>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
          Length = 1287

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1258 (34%), Positives = 657/1258 (52%), Gaps = 160/1258 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN-----DRIVSGIDP--SIFLRF 82
            D ++++  +  ++GLV Q +DSFN F    ++ ++        D    G D    I LR 
Sbjct: 47   DSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGREIILRR 106

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPI-----------------LV 119
             DV  G+     P++T   G +  L P+ CR  ++TY+API                 L 
Sbjct: 107  YDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPLN 166

Query: 120  NIEYVQGSHTEKT-----------------TMEKNDVV----------IGRIPIMLRSCR 152
             +   +  H  +T                    K+D +          +G+IPIM++S  
Sbjct: 167  QLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVKSKI 226

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINA 209
            C LY +D+  L  L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A
Sbjct: 227  CHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQA 286

Query: 210  SVTSSTE---------TVKSKTVIQMEKGKMY----LLLNQFVKKIPIMVVMKAMGMESD 256
             + S+ E          ++  T     KG++     + L    +++ + +V +A+G+ SD
Sbjct: 287  EIRSALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSD 346

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D R S +L    P IEE     I  +E AL+Y+ GK    + G   N R  
Sbjct: 347  EDILNHICYDRRDSQMLEALRPCIEEA--FCIQDREVALDYI-GKRGNGSTGINRNGRIK 403

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L+   L ++         K F++  M+ ++++ +L +   DD+D+ G KRL+L+G
Sbjct: 404  AAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463

Query: 374  QLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
             L++ LF  + + +  ++    ++ VD        +  F L+  I   ++T GL+ +L+T
Sbjct: 464  PLLAKLFRGIVRRLTQDLMGYMKRCVDT-------NKHFSLALGIKASTLTNGLKYSLAT 516

Query: 430  GNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            GN+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++C
Sbjct: 517  GNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 576

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG+ACGLVKNL+LM  V+      P+I       +E LE    E L  PN+  V 
Sbjct: 577  PAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLE--EYEPLRYPNATKVF 634

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +G H+ PK    +++ LRR   I   VS+  + + R   I SD GRV RPL + +
Sbjct: 635  VNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVE 694

Query: 609  K------GISR-----IKEH-----HMKEL---LDGVRSFDDFLREGLIEYLDVNEENNA 649
            +      G+ +      KEH       KEL    +    +   L  G IEYLD  EE  A
Sbjct: 695  QEDNSESGVEKGQLILTKEHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETA 754

Query: 650  LIAL-----------------YEGDAT------------PDT---THIEIEPFTILGVIA 677
            +I +                 +E DA             P T   TH EI P  +LG+ A
Sbjct: 755  MICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICA 814

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + 
Sbjct: 815  SIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLK 874

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++
Sbjct: 875  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQ 934

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +PDR+     +             L++DG+ APG  +  +D+ I K SP+      + 
Sbjct: 935  FEKPDRSNTLRPKHGTYDK-------LENDGIIAPGIRVTGDDIIIGKTSPINPDNQEL- 986

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
              GQ  +++     +      E+ +VD VA  ++++G   +K  +R T+ P++GDKF+SR
Sbjct: 987  --GQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASR 1044

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K G   G    
Sbjct: 1045 HGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGALKGMEGD 1104

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
             + F +      TV+S+S  L +HG+   G +++Y G TG  L+A +F GP YYQ+L+HM
Sbjct: 1105 ATPFTDV-----TVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLRHM 1159

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F
Sbjct: 1160 VDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAF 1219

Query: 1098 EVQVCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             V +C +CGL+    +  K    C  CKN   I+ + +PYA KLL QEL SMNI  RL
Sbjct: 1220 RVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIASRL 1277


>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2508]
 gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2509]
          Length = 1287

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/1258 (34%), Positives = 657/1258 (52%), Gaps = 160/1258 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN-----DRIVSGIDP--SIFLRF 82
            D ++++  +  ++GLV Q +DSFN F    ++ ++        D    G D    I LR 
Sbjct: 47   DSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGREIILRR 106

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPI-----------------LV 119
             DV  G+     P++T   G +  L P+ CR  ++TY+API                 L 
Sbjct: 107  YDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPLN 166

Query: 120  NIEYVQGSHTEKT-----------------TMEKNDVV----------IGRIPIMLRSCR 152
             +   +  H  +T                    K+D +          +G+IPIM++S  
Sbjct: 167  QLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVKSKI 226

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINA 209
            C LY +D+  L  L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A
Sbjct: 227  CHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQA 286

Query: 210  SVTSSTE---------TVKSKTVIQMEKGKMY----LLLNQFVKKIPIMVVMKAMGMESD 256
             + S+ E          ++  T     KG++     + L    +++ + +V +A+G+ SD
Sbjct: 287  EIRSALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSD 346

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D R S +L    P IEE     I  +E AL+Y+ GK    + G   N R  
Sbjct: 347  EDILNHICYDRRDSQMLEALRPCIEEA--FCIQDREVALDYI-GKRGNGSTGINRNGRIK 403

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L+   L ++         K F++  M+ ++++ +L +   DD+D+ G KRL+L+G
Sbjct: 404  AAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463

Query: 374  QLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
             L++ LF  + + +  ++    ++ VD        +  F L+  I   ++T GL+ +L+T
Sbjct: 464  PLLAKLFRGIVRRLTQDLMGYMKRCVDT-------NKHFSLALGIKASTLTNGLKYSLAT 516

Query: 430  GNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            GN+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++C
Sbjct: 517  GNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 576

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG+ACGLVKNL+LM  V+      P+I       +E LE    E L  PN+  V 
Sbjct: 577  PAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLE--EYEPLRYPNATKVF 634

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +G H+ PK    +++ LRR   I   VS+  + + R   I SD GRV RPL + +
Sbjct: 635  VNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVE 694

Query: 609  K------GISR-----IKEH-----HMKEL---LDGVRSFDDFLREGLIEYLDVNEENNA 649
            +      G+ +      KEH       KEL    +    +   L  G IEYLD  EE  A
Sbjct: 695  QEDNSESGVEKGQLILTKEHIRRLEQDKELGKYHEEYFGWQGLLESGAIEYLDAEEEETA 754

Query: 650  LIAL-----------------YEGDAT------------PDT---THIEIEPFTILGVIA 677
            +I +                 +E DA             P T   TH EI P  +LG+ A
Sbjct: 755  MICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICA 814

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + 
Sbjct: 815  SIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLK 874

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++
Sbjct: 875  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQ 934

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +PDR+     +             L++DG+ APG  +  +D+ I K SP+      + 
Sbjct: 935  FEKPDRSNTLRPKHGTYDK-------LENDGIIAPGIRVTGDDIIIGKTSPINPDNQEL- 986

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
              GQ  +++     +      E+ +VD VA  ++++G   +K  +R T+ P++GDKF+SR
Sbjct: 987  --GQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASR 1044

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K G   G    
Sbjct: 1045 HGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGALKGMEGD 1104

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
             + F +      TV+S+S  L +HG+   G +++Y G TG  L+A +F GP YYQ+L+HM
Sbjct: 1105 ATPFTDV-----TVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLRHM 1159

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F
Sbjct: 1160 VDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAF 1219

Query: 1098 EVQVCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             V +C +CGL+    +  K    C  CKN   I+ + +PYA KLL QEL SMNI  RL
Sbjct: 1220 RVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIASRL 1277


>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
 gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
          Length = 1256

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1249 (34%), Positives = 652/1249 (52%), Gaps = 150/1249 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIFL 80
            D + ++  +   +GLV Q LDSF+ F+++ ++++V    ++            IDP +  
Sbjct: 24   DCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDPVVIR 83

Query: 81   RFK----DVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTME 135
            R++     + + +PS + ++G +  L P   R  ++TYA+P+ +N++       E+   +
Sbjct: 84   RYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGRERKVAD 143

Query: 136  KND---------------------------------VVIGRIPIMLRSCRCVLYGKDEAE 162
            ++                                    IGRIPIML+S  C+L    E  
Sbjct: 144  RDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLRDLSEQS 203

Query: 163  LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSST 215
            L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   +
Sbjct: 204  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGS 263

Query: 216  ETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
              +   ++    KG          +   L      IPI++V +A+G+ SD++++  +  D
Sbjct: 264  RILSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNHICYD 323

Query: 267  PRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDV 322
               +    +L P IEE     I  +E AL+++  +    T  S  +DR  R A  I++  
Sbjct: 324  RNDTPMLEMLKPCIEE--GFVIQDREVALDFISKRGSSQT--SMSHDRRVRYAREIMQKE 379

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
            FL ++     +   K F++  M+ ++++  L +  +DD+D+ G KRL+L+G L++ LF  
Sbjct: 380  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRT 439

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRK 442
            LF  +  ++ + V   +     +    L+  +   ++T GL+  L+TGN+  ++  M  K
Sbjct: 440  LFTRVTRDLTRYVQRCVET---NREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSK 496

Query: 443  -GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++QVL+R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLV
Sbjct: 497  AGVSQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 556

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLALM  +T      P++       +E LE    E L  P++  V  NG+ +G HR P 
Sbjct: 557  KNLALMCSITVGSPSEPIVDFMIQRNMEVLEEF--EPLVTPHATKVFVNGVWVGIHRDPA 614

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISRI 614
                 ++ LRR   I   VS+  + + R   I +D GRVCRPL + D        G   +
Sbjct: 615  HLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVL 674

Query: 615  KEHHMKEL---------------LDGVRSFDDFLREGLIEYLDVNEENNALIA------- 652
             + H++ L                +    ++  ++ G+IEY+D  EE   +IA       
Sbjct: 675  NKDHIRRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLE 734

Query: 653  ----LYEGDATPD-------------------TTHIEIEPFTILGVIAGLIPYPHHNQSP 689
                L  G A P+                    TH EI P  ILG+ A +IP+P HNQSP
Sbjct: 735  ISKQLQAGYAMPEDNSDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSP 794

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA V
Sbjct: 795  RNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIV 854

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            A+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +K    T ++  +P R+     
Sbjct: 855  AIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGM 914

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
            R             ++DDGL APG  +   D+ I K +PL      +   GQ    +   
Sbjct: 915  RKGTYDK-------IEDDGLVAPGVRVTGEDIIIGKTAPLAPESEEL---GQRTKAHTKV 964

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIV 928
              +      E+ +VD+V L +  + DL  +K  +R T+ P++GDKF+SRHGQKG  G   
Sbjct: 965  DVSTPLRATESGIVDQVLLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1024

Query: 929  QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHA 988
            + ED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +   
Sbjct: 1025 RHEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA----TPFT 1078

Query: 989  D-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
            D TV+S+S  L +HG+   G +++Y+G TG  L+A +F+GP YYQ+L+HMV DK+HAR  
Sbjct: 1079 DVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARAR 1138

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  CGL
Sbjct: 1139 GPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGL 1198

Query: 1108 LGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +     KLK G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1199 MTPIA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARM 1246


>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
 gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
          Length = 1254

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1249 (34%), Positives = 654/1249 (52%), Gaps = 152/1249 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIFL 80
            D + ++  +   +GLV Q LDSF+ F+++ ++++V    ++            IDP +  
Sbjct: 24   DCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDPVVIR 83

Query: 81   RFK----DVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYV----------- 124
            R++     + + +PS + ++G +  L P   R  ++TYA+P+ +N++             
Sbjct: 84   RYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGRERKAVD 143

Query: 125  ---QGSHTEK-----------------TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELA 164
               +G   E+                 +  E     IGRIPIML+S  C+L    E  L 
Sbjct: 144  REGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDLSEQSLY 203

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSST 215
               ECP D GGYFII G+EKVL+ QE+ + N  I+   KK           I ++V   +
Sbjct: 204  NWNECPYDSGGYFIINGSEKVLIAQERSAGN--IVQVFKKAPPSPTPYIAEIRSAVEKGS 261

Query: 216  ETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
              +   ++    KG          +   L      IPI++V +A+G+ SD++++  +  D
Sbjct: 262  RILSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNHICYD 321

Query: 267  PRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDV 322
               +    +L P IEE     I  +E AL+++  +    T  S  +DR  R A  I++  
Sbjct: 322  RNDTPMLEMLKPCIEE--GFVIQDREVALDFISKRGSSQT--SMSHDRRVRYAREIMQKE 377

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
            FL ++     +   K F++  M+ ++++  L +  +DD+D+ G KRL+L+G L++ LF  
Sbjct: 378  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRT 437

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRK 442
            LF  +  ++ + V   +     +    L+  +   ++T GL+  L+TGN+  ++  M  K
Sbjct: 438  LFTRVTRDLTRYVQRCVET---NREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSK 494

Query: 443  -GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++QVL+R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLV
Sbjct: 495  AGVSQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 554

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLALM  +T      P++       +E LE    E L  P++  V  NG+ +G HR P 
Sbjct: 555  KNLALMCSITVGSPSEPIVDFMIQRNMEVLEEF--EPLVTPHATKVFVNGVWVGVHRDPA 612

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISRI 614
                 ++ LRR   I   VS+  + + R   I +D GRVCRPL + D        G   +
Sbjct: 613  HLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVL 672

Query: 615  KEHHMKEL---------------LDGVRSFDDFLREGLIEYLDVNEENNALIA------- 652
             + H++ L                +    ++  ++ G+IEY+D  EE   +IA       
Sbjct: 673  NKDHIRRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLE 732

Query: 653  ----------LYEGDATPDT-------------THIEIEPFTILGVIAGLIPYPHHNQSP 689
                      L E +  P+              TH EI P  ILG+ A +IP+P HNQSP
Sbjct: 733  ISKQLQAGYTLPEDNNDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSP 792

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQNA V
Sbjct: 793  RNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQNAIV 852

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            A+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +K    T ++  +P R+     
Sbjct: 853  AIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGM 912

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
            R             ++DDGL APG  +   D+ I K +PL      +   GQ    +   
Sbjct: 913  RKGTYDK-------IEDDGLVAPGVRVTGEDIIIGKTAPLAPESEEL---GQRTKAHTKV 962

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIV 928
              +      E+ +VD+V L +  + DL  +K  +R T+ P++GDKF+SRHGQKG  G   
Sbjct: 963  DVSTPLRATESGIVDQVLLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITY 1022

Query: 929  QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHA 988
            + ED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +   
Sbjct: 1023 RHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA----TPFT 1076

Query: 989  D-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
            D TV+S+S  L +HG+   G +++Y+G TG  L+A +F+GP YYQ+L+HMV DK+HAR  
Sbjct: 1077 DVTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARAR 1136

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C  CGL
Sbjct: 1137 GPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGL 1196

Query: 1108 LGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +     KLK G+  C  C N   IS + +PYA KLL QEL +MNI  R+
Sbjct: 1197 MTPIA-KLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARM 1244


>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
 gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1185

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1169 (36%), Positives = 631/1169 (53%), Gaps = 69/1169 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVN------TGIRKIVRANDRIVSGI-------DP 76
            D ++++  F + +GLV Q LDS+N F+         +  I R +D+   G+        P
Sbjct: 37   DIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMIESMAVIPRQDDQYDPGVTMEEQRDQP 96

Query: 77   SIFLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSH 128
             + L  +DV IG PS         G    L P+ CRL DMTY A   V +    Y   + 
Sbjct: 97   RLVL--QDVVIGNPSHQTQSYFAGGSLPPLFPNECRLRDMTYDAQAQVTLGVELYHPHAD 154

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
            T   T  +N V +GRIPIML+S RC L GKDE EL RL ECP D GGYF+I GTEKVL+ 
Sbjct: 155  TPHDTFLRN-VELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEKVLIA 213

Query: 189  QEQLSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGK--------MYLLLNQ 237
            QE+ + N V   + +KG    + + V  S    ++  +I   K K        +   + Q
Sbjct: 214  QERQAANHVYTFSRQKGLLCEVKSIVEGSLNKPRTLQIIMQYKNKGPGSGFENLMCRVAQ 273

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQEKALEY 294
              + IP+ V+ +AM M +D+E++Q V  D + +A   LL  S+ + + L I+T+E+AL Y
Sbjct: 274  MDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTLQIFTREEALGY 333

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            +  ++ +    +   + +  A S+L    L ++    +  R KC Y+  M+ +++   L 
Sbjct: 334  IGRRLGKQDAMA---NLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALG 390

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
            +    D+D++G+KR++++G L+++  +     +  E+ KT+    + P     F   + I
Sbjct: 391  RHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPR--GVFSFGRVI 448

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
                IT GL R L+TGNF   +    + G+ Q L RL++  +L ++ R+      S K +
Sbjct: 449  HSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIAASSKAT 508

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  +QWG +CP +TPEG + GL+KN+ALM  ++   +   ++       ++    +
Sbjct: 509  RPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQAR-IDGFRTI 567

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
              E+  +     V  NG ++G  R P+     +R  RR G++   VS+  + + R + + 
Sbjct: 568  GLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGELSNEVSIVRDIRDREIRVF 627

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-------SFDDFLREGLIEYLDVNEEN 647
            SD GR  RPL +A+    ++++  M++LL   +       S+   L++G +E +D  EE+
Sbjct: 628  SDAGRCLRPLFVAENCHLKLRKSGMRDLLVSEKAGGKKSISWSTALKKGYVELIDCEEED 687

Query: 648  NALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
            + LIA+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG  
Sbjct: 688  SLLIAMTPSEVEKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIY 747

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
            A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+M
Sbjct: 748  ASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIM 807

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            ++S+++RGF R    + + A  ++      +    PDR      R++   +S L     D
Sbjct: 808  SRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPDRE---VCRVKRADYSKL-----D 859

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
             DGL  PG  +   DV + K  PL         TG T    R A  T +    E  VVD+
Sbjct: 860  TDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRAT--EKGVVDK 917

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  + N D   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  GI PDLI
Sbjct: 918  VMLTMNNN-DRFTKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLI 976

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTV  +IE L GK  V+C  +  G  +  P      V+   + L       
Sbjct: 977  INPHAIPSRMTVAHLIETLAGK--VAC--YKGGEVYATPFCSV-VVDDFGKALHALRSQR 1031

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G + +Y+G TG PL   IF GP +YQ+LKH+  DK+HAR  GP   L RQPTEGRA  G
Sbjct: 1032 YGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEG 1091

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC+++YGAS  + ERL   SD + V VC +CG +   + KL    C  C+N
Sbjct: 1092 GLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICVADTKLNRYQCKGCEN 1151

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS + +PYACKLL QEL SM I+PRL
Sbjct: 1152 DTRISQVLMPYACKLLFQELMSMTILPRL 1180


>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1259

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1252 (34%), Positives = 662/1252 (52%), Gaps = 154/1252 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-------VSGIDPSIFLRF 82
            D + ++  F + +GLV Q +DSF+ F ++ +++++    +I       +S  D  I LR 
Sbjct: 25   DCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALRR 84

Query: 83   KDVRIG-----QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +V+ G     +PS+T  DG    L P+ CR  ++TYA+P+ V I               
Sbjct: 85   YEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPLN 144

Query: 122  ---EYVQ------------------------GSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
               E  Q                        G+   K+   K+ + IGR+PIM++S  C 
Sbjct: 145  ELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKICH 204

Query: 155  LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-------- 206
            L  + E +L  L ECP D GGYFII G+EKVL+ QE+ + N  I+   KK          
Sbjct: 205  LSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKAQPSPYSYTA 262

Query: 207  -INASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESD 256
             I +++   +  + S  +    KG          ++  L      +PI +V +A+G+ SD
Sbjct: 263  EIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKADLPIAIVFRALGVVSD 322

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D   S +L    P IEE     I  +E AL+++ GK + S    P   R  
Sbjct: 323  EDILNHICYDRNDSQMLEMLRPCIEEA--FCIQDREVALDFI-GK-RGSNHNIPREKRVR 378

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G
Sbjct: 379  TAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAG 438

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF 432
             L++ LF ++ + M  E+       L +   S+R F L+  +   +++ GL+ +L+TGN+
Sbjct: 439  PLLAKLFRNIVRRMNQELSGH----LKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNW 494

Query: 433  -DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
             D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +
Sbjct: 495  GDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 554

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEG+ACGLVKNL+LM +V+      P+I      G+E LE    E L  PN+  V  NG
Sbjct: 555  TPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE--EYEPLRYPNATKVFLNG 612

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG- 610
            + +G H+ P+     ++  RR   I   VS+  + + R   I SD GRV RP+ + ++  
Sbjct: 613  VWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSA 672

Query: 611  ----------ISRIKEHHMKELLDGVR-------SFDDFLREGLIEYLDVNEENNALIAL 653
                      + +   + M+E  +          +++     G+IEYLD  EE  A+I +
Sbjct: 673  NGIVPQGSLVLQKATVNEMREQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICM 732

Query: 654  YEGD---------------------------ATPDT---THIEIEPFTILGVIAGLIPYP 683
               D                             P T   TH EI P  +LG+ A +IP+P
Sbjct: 733  TPEDLEIYRLQKQGQVVEDNADGPNSRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFP 792

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L A
Sbjct: 793  DHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPA 852

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R
Sbjct: 853  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEKPFR 912

Query: 804  TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 863
            +    + +++ H +      LDDDG+ APG  +   D+ I K SP+    + +   GQ  
Sbjct: 913  S----DTLRLKHGT---YDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAEL---GQRT 962

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
            +++     +      E  +VD+V + ++++G   +K  +R T+ P++GDKF+SRHGQKG 
Sbjct: 963  TQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGT 1022

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     + F +
Sbjct: 1023 IGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTD 1082

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
                  TV+S+S+ L   G+   G +++Y+G TG  L+A +F GP YYQ+L+HMV DK+H
Sbjct: 1083 V-----TVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIH 1137

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V VC 
Sbjct: 1138 ARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCE 1197

Query: 1104 VCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1198 ICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1249


>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
          Length = 1266

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1256 (34%), Positives = 653/1256 (51%), Gaps = 158/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---------RANDRIVSGIDPSIFL 80
            D ++++  +   + LV Q +DSFN F  T ++ ++         ++N  I S  D  + L
Sbjct: 28   DSWKIISAYFDKKSLVSQQIDSFNEFTTTTVQSLIDEHSLLTLDQSNPPIAS--DRPVKL 85

Query: 81   R-----FKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILV--------------- 119
            R     F ++ + +P     DG    L P+ CR  ++TY+ PI                 
Sbjct: 86   RRYEIKFGNIMVSKPQFAEGDGRVSTLTPYECRDRNLTYSCPIYARITKKVSLAVDEPIP 145

Query: 120  -------NIEYVQ--GSHTEKTTME------------------KNDVVIGRIPIMLRSCR 152
                    IE +Q  G    +   E                  K+ V +GR+PIM++S  
Sbjct: 146  DDELDEEQIEEMQRTGEQPTRIVWEEEPSDLPDYEKDKADEDMKDMVFMGRLPIMVKSKI 205

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------ 206
            C L  +DE  L  L ECP D GGYFII G+EKVL+ QE+ + N  I+   KK        
Sbjct: 206  CHLAYEDEDGLFLLNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKAQPSKFSY 263

Query: 207  ---INASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGME 254
               I +++   +  + S +++ + KG          ++  L     ++PI VV +A+G+ 
Sbjct: 264  TAEIRSALEKGSRLISSLSIMLVAKGDTGRGSFGQTVHTTLPYIKSELPIAVVFRALGVV 323

Query: 255  SDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            SD++++  +  D   S +L    P IEE     I  +E AL+++ GK  +++ G    DR
Sbjct: 324  SDEDILNHICYDRNDSQMLEMLRPCIEEA--FCIQDREVALDFI-GKRGQNSHGISRKDR 380

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  IL+   L ++         K F++  M+ ++++  L +  +DD+D+ G KRL+L
Sbjct: 381  VRAARDILQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDL 440

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L++ LF  + + M  E+   +   +        FDL   I   ++T GL+ +L+TGN
Sbjct: 441  AGSLLAKLFRGIIRKMYQELMNHLKRCVDT---GKHFDLRVGIRHQTLTNGLKYSLATGN 497

Query: 432  F-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            + D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP 
Sbjct: 498  WGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 557

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG+ACGLVKNL+LM +V+      P++       +E LE    E L  PN+  +  N
Sbjct: 558  ETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLE--EYEPLRYPNATKIFVN 615

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI---- 606
            G  +G H+ PK    +++ LRR G I   VS+  + + R   I SD GRV RPL      
Sbjct: 616  GSWVGVHQDPKHLVSLVQGLRRKGVIQSEVSLVRDIRDREFKIFSDAGRVMRPLFAIEQE 675

Query: 607  --ADKGISR-----IKEHHMKELLDGVRSFDD--------FLREGLIEYLDVNEENNALI 651
              AD G+ +      KEH  +   D   S DD            G IEYLD  EE  A+I
Sbjct: 676  DNADSGVEKGMLVLTKEHVQRLDADEGLSKDDPKYFGWDGICDAGAIEYLDAEEEETAMI 735

Query: 652  ALYEGD-----------ATPDT---------------------THIEIEPFTILGVIAGL 679
             +   D             PD                      TH EI P  +LG+ A +
Sbjct: 736  CMTPEDLDNYRMQKAGYVLPDETNDEDINKRVKTKMNPTTHMYTHCEIHPSMLLGICASI 795

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + 
Sbjct: 796  IPFPDHNQSPRNTYQSAMGKQAMGFFLTNYPRRMDTMANVLYYPQKPLATTRSMEYLKFR 855

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  +   
Sbjct: 856  ELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYTDSEKRVGINFVETFE 915

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R+    + +++ H +      LDDDG+ APG  +   D+ I K SP+      M   
Sbjct: 916  KPFRS----DTLRLKHGT---YDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDHQEMGQR 968

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
             Q   + R A    +    E+ ++D+V + ++++    +K  +R T+ P++GDKF+SRHG
Sbjct: 969  TQAHVK-RDASTPLRST--ESGIIDQVVVTTNQDNLRYVKVRVRTTKIPQIGDKFASRHG 1025

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   + ED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     +
Sbjct: 1026 QKGTIGVTYRSEDMPFTTEGILPDIIINPHAIPSRMTIAHLIECLLSKVATLKGMEGDAT 1085

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F +      TV+S+S  L +HG+   G +++Y G TG  L+A +F GP YYQ+L+HMV 
Sbjct: 1086 PFTDV-----TVDSVSGLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRHMVD 1140

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V
Sbjct: 1141 DKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAYRV 1200

Query: 1100 QVCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+    +  K    C  CKN   I+ +++PYA KLL QEL +MNI  R+
Sbjct: 1201 HICEICGLMTPIANLTKQSFECRPCKNKTRIAQVQIPYAAKLLFQELAAMNIAARM 1256


>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1131

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1146 (36%), Positives = 632/1146 (55%), Gaps = 111/1146 (9%)

Query: 95   DGVSEKLNPHMCRLSDMTYAAPILVNI----EYVQGSHTEKT-----------TMEKND- 138
            DG    + P+  RL ++TY++P+ V++    +   G   E+T             EKN  
Sbjct: 5    DGTVSPMFPNEARLRNLTYSSPLYVDMSKSNKLATGEFDEETGEPIYIADDVDNDEKNST 64

Query: 139  -VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
             + IG++PIMLRS  C+L   ++  L  L ECP D GGYF+I G+EKVL+ QE+++ N V
Sbjct: 65   QIYIGKVPIMLRSEFCILDKLEDPGLYELNECPFDQGGYFVINGSEKVLIAQERMAANHV 124

Query: 198  IIDTDKKGNI---NASVTSSTETVKSKTVIQMEKG----KMYLLLNQFVKKIPIMVVMKA 250
             +   K G +     S T S+  VK     + EK      +   L      IPI+VV +A
Sbjct: 125  YVFA-KAGPLAVEKGSKTVSSMQVKMYGGHKAEKAGGGATIKTTLPYIRNDIPIVVVFRA 183

Query: 251  MGMESDQEVVQMVGRDPRYSAL---LLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
            +G+  D+++++ +  D   +A+   L P +E+  +  I  QE AL+++ G+   +T G  
Sbjct: 184  LGIIPDKDILEHICYDRNDTAMFEMLKPCLED--SFPIQEQEVALDFI-GRRGTAT-GLS 239

Query: 308  PNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNK 367
               R   A  IL+   L ++ +       K ++   M+ R++ A L++  +DD+D+ G K
Sbjct: 240  REKRLKYAEEILQKEMLPHISMSEGQQGKKAYFFGYMIHRLLLAALDRRDLDDRDHFGKK 299

Query: 368  RLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGL 423
            RL+L+G L++ LF  LF+ +  +V    QK V+  + KP     F+L+  +  ++IT GL
Sbjct: 300  RLDLAGPLLAGLFRMLFRKLTKDVYRHLQKCVE--MQKP-----FNLNAAVKSNTITNGL 352

Query: 424  ERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPS 482
            + +L+TGN+ D K+    R G++QVL R +F  TL H+ R +    +  K++ PR L  S
Sbjct: 353  KYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNS 412

Query: 483  QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542
             WGM+CP +TPEG+ACGLVKNLALM++++      P++      G+E L+  S +     
Sbjct: 413  HWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMESLDEFSSD---MS 469

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
            N   V  NG+  G HR P    D +++LRR G I   VSV  + ++R + + +DGGRVCR
Sbjct: 470  NGTKVFVNGVWQGVHRAPAELLDTIKRLRRCGDIEPEVSVMRDVRERELRVFTDGGRVCR 529

Query: 603  PLVIADKGISRIKEHHMKELLDGVRS-------------------FDDFLREGLIEYLDV 643
            PL I +     +K+ H++ L +G  +                   +   +  G++EYLD 
Sbjct: 530  PLFIVENQQLLLKKEHIEWLSNGCETAEEDQDAGEEAADDGVPFGWSQLVARGIVEYLDA 589

Query: 644  NEENNALIAL---------------------YEGDA---------TPDTTHIEIEPFTIL 673
             EE   +I +                     Y+  A         +   TH EI P  IL
Sbjct: 590  EEEETVMICMTPEELEQSREYQETGQVPKENYDPAARLKGNTSMYSHTWTHCEIHPAMIL 649

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++
Sbjct: 650  GICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFRTRMDTMANILYYPQKPLATTRSM 709

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R    + Y    ++    
Sbjct: 710  EYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMDQEKRAGAL 769

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
              +   +P R       +++ H +      LDDDG+  PG  +  +D+ I K +P+    
Sbjct: 770  QMEEFEKPTRDST----LRLKHGT---YDKLDDDGIITPGTRVSGDDIIIGKTAPIPKDS 822

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
              +    +T ++ R      K    E  ++D+V + ++++G   +K  IR TR PE GDK
Sbjct: 823  EELGQRMKTHTK-RDVSMPLKST--ENGIIDQVLVTTNQDGLKFVKVRIRSTRIPETGDK 879

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKG  G + +QED PF+  G+CPD+I+NPH  PSRMT+G ++E L  K     G
Sbjct: 880  FASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLSKVSTITG 939

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                 + F E      TVE+IS  L   G+   G +++++G TG  L+A  ++GP YYQ+
Sbjct: 940  NEGDATPFSEV-----TVEAISALLKDKGYQSRGLEIMFNGHTGKKLRAQCYLGPTYYQR 994

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + ER+   
Sbjct: 995  LKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMFDV 1054

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD + V VC  CG++   N K ++  C +C+N   IS + +PYA KLL QELQSMNI  R
Sbjct: 1055 SDAYRVHVCDFCGMVAIANLKKQSFECRSCRNKTAISQVYIPYAAKLLFQELQSMNIASR 1114

Query: 1154 LKLAEA 1159
                 A
Sbjct: 1115 FVFESA 1120


>gi|444511897|gb|ELV09971.1| DNA-directed RNA polymerase III subunit RPC2 [Tupaia chinensis]
          Length = 841

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/794 (46%), Positives = 484/794 (60%), Gaps = 119/794 (14%)

Query: 60  IRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPIL 118
           I+KI++AN+++ S  DP  +L++ ++ +G P +     V+  ++PH CRL DMTY+API 
Sbjct: 8   IKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPIT 67

Query: 119 VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
           V+IEY +GS      + +N + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI
Sbjct: 68  VDIEYTRGSQR----IIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFI 123

Query: 179 IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
           +KG EKV+LIQEQLSKNR+I++ D+KG + ASVTSST   KS+T + +++G+ YL  N  
Sbjct: 124 VKGVEKVILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTL 183

Query: 239 VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            + IPI+++ KAMG+ESDQE+VQM+G +    A   PS+EEC    I+TQ +  E+    
Sbjct: 184 SEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQVKEF---- 239

Query: 299 VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
                                             NFR KC Y AVM+RR++ A    + +
Sbjct: 240 ----------------------------------NFRAKCIYTAVMVRRVILAQ-GDNKV 264

Query: 359 DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
           DD+DY GNKRLEL+GQL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D 
Sbjct: 265 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQ 323

Query: 419 ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
           IT G+   +ST             G+ + LA ++ I T                      
Sbjct: 324 ITNGMVNAISTAC-----------GLVKNLALMTHITT---------------------- 350

Query: 479 LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
                       D  +G    L  N                      LGVED+ LL GEE
Sbjct: 351 ------------DMEDGPIVKLASN----------------------LGVEDVNLLCGEE 376

Query: 539 LHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG 598
           L  PN FLV  NG ILG  R  K   +  R +RRAG I EFVS+  N   RCVYI+SDGG
Sbjct: 377 LSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGG 436

Query: 599 RVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA 658
           R+CRP +I  K    +   HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE   
Sbjct: 437 RLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTI 496

Query: 659 TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
             DTTH+EIEPFT+LGV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+Y
Sbjct: 497 NKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMY 556

Query: 719 LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
           LL YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+
Sbjct: 557 LLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCL 616

Query: 779 VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
           V K      ++Y N T D+++ P      A R  +  H      ILD DG+ +PGE ++ 
Sbjct: 617 VYKNAKCTLKRYTNQTFDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGERVEN 669

Query: 839 NDVYINKESPLETR 852
             V +NK  P  T+
Sbjct: 670 KQVLVNKSMPTVTQ 683



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 118/140 (84%), Gaps = 6/140 (4%)

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
            PL+AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI
Sbjct: 705  PLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI 764

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYAC 1138
             YGASML+ ERLM+SSD FEV VC  CGLLGY      +G C  CK+  ++SS+++PYAC
Sbjct: 765  GYGASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYAC 818

Query: 1139 KLLIQELQSMNIVPRLKLAE 1158
            KLL QELQSMNI+PRLKL++
Sbjct: 819  KLLFQELQSMNIIPRLKLSK 838


>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
 gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
          Length = 1260

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1202 (36%), Positives = 650/1202 (54%), Gaps = 93/1202 (7%)

Query: 26   KSVVDK---FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND----------RIVS 72
            +S VD+   + ++  F    GLV Q L+SFN FV+  I++I+  +           R   
Sbjct: 84   QSPVDQDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIKPTPQYRPEE 143

Query: 73   GIDPSIFLRFK--DVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT 129
             ++ ++  R K   + + +PS+   +G+S+ L P+  R  ++TY++P+ V++E    +  
Sbjct: 144  EVESNVIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYTVD 203

Query: 130  EKTTMEK-------NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
             +T +E+       + V++GRIP+ML+S  C      E +LA +GEC  D GGYFII G 
Sbjct: 204  PETGVERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIINGG 263

Query: 183  EKVLLIQEQLSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQMEK----------- 228
            EKVL+ QE+++ N V +   K   K    A V S  E +++ +   ++K           
Sbjct: 264  EKVLVAQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGMQATSGFAVKKRSRTGEGRGAK 323

Query: 229  -----GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEEC 280
                 G++   L     +IPI+++ +A+G  SD++++  V    +DP+  +L+ PS+EE 
Sbjct: 324  GGRPGGQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLISLMKPSLEE- 382

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
               D  +Q+  L+++ GK +  T G+    R   A  +LR   L +V         K F+
Sbjct: 383  -GFDYGSQDVCLDFI-GK-RGPTVGAQREKRIQYARELLRKEVLPHVGTEAGCENKKAFF 439

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
            +  M+ R++ A L +   DD+D+ G KRL+++G L++  F  L++ MI +V++   I+  
Sbjct: 440  IGYMVHRLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKDVRR---ILQR 496

Query: 401  KPSRSSRFDLSQFIVRDS-ITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLG 458
            +      FD++  I   S IT GL+  ++TGN+   K  K+ R G+ QVL RL+F   L 
Sbjct: 497  QVDHGKSFDVAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRLTFASALS 556

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R++    +  K++ PR L  + WGM+CP +TPEG+A GLVKNLALM+ ++       
Sbjct: 557  HLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDISVGSATNT 616

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            +       G++ LE ++ + +       V  NG  +G           +R+LRR   I  
Sbjct: 617  VHEFLVEWGLDPLEEMTPDVIKE--RVKVFVNGSWVGCFDEADVLCQTLRQLRRRCDISS 674

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRI--KEHHMKELL---DGVRSFDDFL 633
              S+  +   R V I +D GR  RPL + D+G   +  K  H++EL       +S+   +
Sbjct: 675  ETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVMKRGHLEELQRRGKDEKSWGYLM 734

Query: 634  REGLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQ 687
             +G+IE++D  EE   +IA++  D   +       TH EI P  ILGV A +IP+P HNQ
Sbjct: 735  EKGIIEFVDCEEEETCMIAMFVEDIRSEKRLAFPYTHCEIHPSLILGVCASIIPFPDHNQ 794

Query: 688  SPRNTYQCAMGKQAMG--NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            SPRN YQ AMGKQAMG    +FN   RMD+L +LL YPQ+PL+ TR +E + + +L AG 
Sbjct: 795  SPRNVYQSAMGKQAMGVYTSSFNH--RMDTLAHLLYYPQKPLVCTRAMEFLRFRELPAGI 852

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA++ YSGY+ ED+++M++SS+DRG  R +  + Y +  ++   S       P    
Sbjct: 853  NAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCS-EERQQGSLMVESFEP---- 907

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL--------ETRGSIMS 857
            P  E +Q +   +     LD DGL  PG  +  +DV I K SP+             I  
Sbjct: 908  PSIEHVQGMKRGDYSK--LDADGLVEPGSRVLGDDVIIGKTSPIFDDDAGMPGAAAGIAG 965

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
                   R R      +    ET VVD+V L  +  G    K  +R  R P+ GDKF+SR
Sbjct: 966  VPSPFAKRKRDCSLCLR--SSETGVVDQVMLSVNSRGSRFTKVKVRSVRIPQTGDKFASR 1023

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG  G   + ED PF+E GI PDLIMNPH  PSRMT+G ++E L GK     G    
Sbjct: 1024 HGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECLLGKTAAIFGGEGD 1083

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
             + F   +G+A  V  IS  L   G+   G + +Y G TG  L + +F GP YYQ+LKHM
Sbjct: 1084 ATPF---NGYA--VLDISNRLHSLGYERFGNERLYHGHTGRHLPSLVFFGPTYYQRLKHM 1138

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+HAR  GP  MLTRQP EG++R GGLR GEMERDC+I++GA+ ++ ERL   SD +
Sbjct: 1139 VDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHGAAHMLKERLFEQSDAY 1198

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
             V VC +CGL+   +       C  C N   IS + +PYACKLL+QEL +M I PRL L 
Sbjct: 1199 RVHVCDICGLVCTADLSRGNFECKLCDNKSRISQICIPYACKLLLQELMTMCIYPRLVLQ 1258

Query: 1158 EA 1159
             A
Sbjct: 1259 VA 1260


>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1259

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1255 (34%), Positives = 660/1255 (52%), Gaps = 159/1255 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-------VSGIDPSIFLRF 82
            D + ++  F + +GLV Q +DSF+ F ++ +++++    +I       +S  D  I LR 
Sbjct: 24   DCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALRR 83

Query: 83   KDVRIG-----QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +V+ G     +PS+T  DG    L P+ CR  ++TYA+P+ V I               
Sbjct: 84   YEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPLN 143

Query: 122  -----------------------------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCR 152
                                         +Y  G+   K+   K+ + IGR+PIM++S  
Sbjct: 144  ELDEEQQEELANTGEHPTKLEWEEEESGEDY--GADKNKSDDMKDMIFIGRMPIMVKSKI 201

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------ 206
            C L  + E +L  L ECP D GGYFII G+EKVL+ QE+ + N  I+   KK        
Sbjct: 202  CHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKAQPSPYSY 259

Query: 207  ---INASVTSSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGME 254
               I +++   +  + S  +    KG          ++  L      +PI +V +A+G+ 
Sbjct: 260  TAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKSDLPIAIVFRALGVV 319

Query: 255  SDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            SD++++  +  D   S +L    P IEE     I  +E AL+++ GK + S    P   R
Sbjct: 320  SDEDILNHICYDRNDSQMLEMLRPCIEEA--FCIQDREVALDFI-GK-RGSNHNIPREKR 375

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L
Sbjct: 376  VRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDL 435

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTG 430
            +G L++ LF ++ + M  E+       L +   S+R F L+  +   +++ GL+ +L+TG
Sbjct: 436  AGPLLAKLFRNIVRRMNQELSGH----LKRCVESNRQFSLTLGVKPQTLSNGLKYSLATG 491

Query: 431  NF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            N+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP
Sbjct: 492  NWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCP 551

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             +TPEG+ACGLVKNL+LM +V+      P+I      G+E LE    E L  PN+  V  
Sbjct: 552  AETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE--EYEPLRYPNATKVFL 609

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG+ +G H+ P+     ++  RR   I   VS+  + + R   I SD GRV RP+ + ++
Sbjct: 610  NGVWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQ 669

Query: 610  GISRI--------KEHHMKELLDGVR----------SFDDFLREGLIEYLDVNEENNALI 651
              + I        ++  + E+ D             +++     G+IEYLD  EE  A+I
Sbjct: 670  SPTGIVPQGSLVLQKGTVNEMRDQQENPPDNPNDKITWETLAHSGVIEYLDAEEEETAMI 729

Query: 652  ALYEGD----------------------------ATPDT---THIEIEPFTILGVIAGLI 680
             +   D                              P T   TH EI P  +LG+ A +I
Sbjct: 730  CMTPEDLEIYRLQKQGQVIEEDNADDRNRRLKTKINPTTHMYTHCEIHPSMLLGICASII 789

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +
Sbjct: 790  PFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRE 849

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +
Sbjct: 850  LPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQFEK 909

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R+    + +++ H +      LDDDG+ APG  +   D+ I K SP+      +   G
Sbjct: 910  PFRS----DTLRLKHGT---YDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDNQEL---G 959

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            Q  +++     +      E  +VD V + ++++G   +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  QKTTQHVKRDASTPLRSTENGIVDSVIITTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQ 1019

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     + 
Sbjct: 1020 KGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATP 1079

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            F +      TV+S+S+ L   G+   G +++Y G TG  L+A +F GP YYQ+L+HMV D
Sbjct: 1080 FTDV-----TVDSVSQLLRDQGYQSRGFEIMYQGHTGRKLRAQVFFGPTYYQRLRHMVDD 1134

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V 
Sbjct: 1135 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVH 1194

Query: 1101 VCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            VC +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1195 VCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1249


>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
            IPO323]
 gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
          Length = 1231

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1250 (34%), Positives = 653/1250 (52%), Gaps = 159/1250 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----SGIDPS----IFL 80
            D + ++  F   +GLV Q LDSF+ F +T +++IV     IV     +G+D      I  
Sbjct: 6    DCWTVIHSFFDEKGLVSQQLDSFDEFASTTMQQIVDDQPAIVIDQNLAGLDEESGMPIVK 65

Query: 81   RFKDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ--------G 126
            +   +++G     Q +MT  DG +  ++PH  RL ++TY++P+ + +E           G
Sbjct: 66   KRSSIKLGTLTVSQAAMTEGDGSTRAMHPHEARLRNLTYSSPMFIKLEKTTQLARERALG 125

Query: 127  SH----------------TEKTTMEKN---------DVVIGRIPIMLRSCRCVLYGKDEA 161
             H                T +T  E++          V IG++P+ML+S  C L  + EA
Sbjct: 126  GHYDEDQGMWVAPPNWDGTVETVWEEDPDNPKQAIDQVFIGKLPVMLKSKICALRNRSEA 185

Query: 162  ELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSST 215
            EL    ECP D GGYFII G+EKVL+ QE+ + N V +   K  N      + ++V   T
Sbjct: 186  ELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFRKKGTNTPVVAELRSAVERGT 245

Query: 216  ETVKS-------KTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMV--GR 265
              + S       + V     G+   +   +++  +PI +V +AMG+ SD++++  +    
Sbjct: 246  RLISSMQVKLCNQAVAAQHSGQTIKVSLPYIRADVPIAIVFRAMGVVSDEDILAHICPEE 305

Query: 266  DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
            D +    L P +EE     I   + AL+++    +R       + R   A  I++  FL 
Sbjct: 306  DTQMREKLKPCLEEA--FVIQDHDVALDHIG---RRGQQQGTKDRRIRYARDIMQKEFLP 360

Query: 326  NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
            ++     +   K F++  M+ RM++  L +   DD+D+ G KRL+L+G L++ +F   F+
Sbjct: 361  HISQEEGSETKKAFFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKFQ 420

Query: 386  TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGM 444
             ++ ++++ +   +        F+++  +  + IT GL   L+TGN+ D K+    + G+
Sbjct: 421  QLVKDMRQYLHRCVET---GKDFNIALAVKTNIITSGLRYCLATGNWGDQKKAASAKAGV 477

Query: 445  TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
            +QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL
Sbjct: 478  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537

Query: 505  ALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN----SFLVIFNGLILGKHRRP 560
            +LM +VT      P++      G++ LE       H+PN    +  V  NG  +G H+  
Sbjct: 538  SLMCYVTVGTPGEPIVDFMRQRGMDLLEE------HDPNQVKDATKVFLNGTWVGVHKSA 591

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISR 613
                + +R+LRR G +   V++  + ++R + + +D GRVCRPL + D        G   
Sbjct: 592  GQLTETLRQLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNNPKSLEPGTLM 651

Query: 614  IKEHHMKEL---------LDGVRSFD---------DFLREGLIEYLDVNEENNALI---- 651
            +K+ H++ L         L+GV   D           +  G++EYLD  EE  A+I    
Sbjct: 652  LKQDHVERLHQDQELLASLEGVSEEDREQQLFGWKGLVTSGVVEYLDAEEEEVAMIIMTP 711

Query: 652  -------------ALYEGDATPDT-------------THIEIEPFTILGVIAGLIPYPHH 685
                         A+ E    P               TH EI P  ILG+ A +IP+P H
Sbjct: 712  EDLEEHRVMRNGMAVEELKVDPHRRIKPKPNPQVRTYTHCEIHPAMILGICASIIPFPDH 771

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQ  MG         N   RMD++  +L YPQ+PL TTR++E + +  L AGQ
Sbjct: 772  NQSPRNTYQATMGVTLT-----NYNVRMDTMANVLYYPQKPLATTRSMEFLKFRDLPAGQ 826

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y    ++   S  +   +P R+ 
Sbjct: 827  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVESFEKPTRSD 886

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
                RMQ   +  L     D+DG+ +PG  +   D+ I K +P+      +   GQ    
Sbjct: 887  --TMRMQHGTYDKL-----DEDGIISPGARVSGTDILIGKTAPMPPDAEEL---GQRTKL 936

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            +     +      E  VVD+V L ++  G   +K   R T+ P++GDKF+SRHGQKG  G
Sbjct: 937  HVKRDVSTPLRSTENGVVDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQKGTIG 996

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PFS  G+ PD+I+NPH  PSRMT+  +IE L  K G   G+    + F E  
Sbjct: 997  ITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTEV- 1055

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                TV SISE L  +GF   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR
Sbjct: 1056 ----TVTSISEILKSNGFQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHAR 1111

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL+  SD F V +C +C
Sbjct: 1112 ARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDAFRVHICELC 1171

Query: 1106 GLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+    + K +   C  CKN   I+ + +PYA KLL QEL +MN+  R+
Sbjct: 1172 GLMTPIASIKKQQFECRPCKNKTKIAQIIIPYAAKLLFQELAAMNVATRM 1221


>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
 gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
          Length = 1181

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1169 (36%), Positives = 631/1169 (53%), Gaps = 69/1169 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVN------TGIRKIVRANDRIVSGI-------DP 76
            D ++++  F + +GLV Q LDS+N F+         +  I R +D+   G+        P
Sbjct: 33   DIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMIESMAVIPRQDDQYDPGVTMEEQRDQP 92

Query: 77   SIFLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSH 128
             + L  +DV IG PS         G    L P+ CRL DMTY A   V +    Y   + 
Sbjct: 93   RLVL--QDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLGVELYHPHAD 150

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
            T   T  +N V +GRIPIML+S RC L GKDE EL RL ECP D GGYF+I GTEKVL+ 
Sbjct: 151  TPHDTFLRN-VELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEKVLIA 209

Query: 189  QEQLSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGK--------MYLLLNQ 237
            QE+ + N V   + +KG    + + V  S    ++  +I   K K        +   + Q
Sbjct: 210  QERQAANHVYTFSRQKGLLCEVKSIVEGSLNKPRTLQIIMQYKNKGPGSGFENLMCRVAQ 269

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQEKALEY 294
              + IP+ V+ +AM M +D+E++Q V  D + +A   LL  S+ + + L I+T+E+AL Y
Sbjct: 270  MDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTLQIFTREEALGY 329

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            +  ++ +    +   + +  A S+L    L ++    +  R KC Y+  M+ +++   L 
Sbjct: 330  IGRRLGKQDAMA---NLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALG 386

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
            +    D+D++G+KR++++G L+++  +     +  E+ KT+    + P     F   + I
Sbjct: 387  RHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPR--GVFSFGRVI 444

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
                IT GL R L+TGNF   +    + G+ Q L RL++  +L ++ R+      S K +
Sbjct: 445  HSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIAASSKAT 504

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  +QWG +CP +TPEG + GL+KN+ALM  ++   +   ++       ++    +
Sbjct: 505  RPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQAR-IDGFRTI 563

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
              E+  +     V  NG ++G  R P+     +R  RR G++   VS+  + + R + + 
Sbjct: 564  GLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGELSNEVSIVRDIRDREIRVF 623

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-------SFDDFLREGLIEYLDVNEEN 647
            SD GR  RPL +A+    ++++  M+ LL   +       S++  L++G +E +D  EE+
Sbjct: 624  SDAGRCLRPLFVAENCHLKLRKSGMRNLLVSEKAGGKKSISWNTALKKGYVELIDCEEED 683

Query: 648  NALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
            + LIA+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG  
Sbjct: 684  SLLIAMTPNEVEKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIY 743

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
            A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+M
Sbjct: 744  ASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIM 803

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            ++S+++RGF R    + + A  ++      +    PDR      R++   +S L     D
Sbjct: 804  SRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPDRE---LCRVKRADYSKL-----D 855

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
             DGL  PG  +   DV + K  PL         TG T    R A  T +    E  VVD+
Sbjct: 856  TDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTT--EKGVVDK 913

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  + N D   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  GI PDLI
Sbjct: 914  VMLTMNNN-DRFTKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLI 972

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTV  +IE L GK  V+C  +  G  +  P      V+   + L       
Sbjct: 973  INPHAIPSRMTVAHLIETLAGK--VAC--YKGGEVYATPFCSV-VVDDFGKALHALRSQR 1027

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G + +Y+G TG PL   IF GP +YQ+LKH+  DK+HAR  GP   L RQPTEGRA  G
Sbjct: 1028 YGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEG 1087

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC+++YGAS  + ERL   SD + V VC +CG +   + KL    C  C+N
Sbjct: 1088 GLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICVADTKLNRYQCKGCEN 1147

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS + +PYACKLL QEL SM I+PRL
Sbjct: 1148 DTRISQVLMPYACKLLFQELMSMTILPRL 1176


>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
 gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
          Length = 1276

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1248 (34%), Positives = 656/1248 (52%), Gaps = 146/1248 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-RANDRIVSGIDP------SIFLR- 81
            D ++++  +   +GLV Q +DSF+ F +T I+ +V    D  +   +P       I +R 
Sbjct: 42   DCWEVIAAYFDSKGLVSQQIDSFDEFTSTTIQSLVDEYADLTLDHPNPGDDAGRDIAMRR 101

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F +V I +P++T   G +  L P+ CR  ++TY+AP+   +               
Sbjct: 102  YDIHFDNVLISKPTLTEATGETTSLLPYECRDRNLTYSAPMYCRVMKRARVAINEEVPLK 161

Query: 122  -------EYVQ-----------------GSHTEKTTMEKNDVV-IGRIPIMLRSCRCVLY 156
                   EY+                   S   K   +K D++ +G++P+M++S  C L+
Sbjct: 162  DMDEEQQEYMARTGEVPKIIRWEEEDTGPSEGAKGDDQKGDLIFLGKLPVMVKSQVCHLH 221

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINASVTS 213
            G+DE  L  L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A + S
Sbjct: 222  GEDEESLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRS 281

Query: 214  STE---------TVKSKTVIQMEKGKM----YLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            + E          +K  T    EKG++     + L    + + + +V +A+G+ SD++++
Sbjct: 282  ALEKGSRLISSLQMKLHTKGSPEKGRLPNTVSVTLPYVREDVSLAIVFRALGIVSDEDIL 341

Query: 261  QMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317
              +  D   + +L    P IEE     I  +E AL+++ GK      G    +R   A  
Sbjct: 342  NHICYDRTDTQMLEALRPCIEEA--FCIQDREIALDFI-GKRGNGNAGQNRVNRVRAAKE 398

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
            +L+   L ++         K F++  M+ ++++  L +   DD+D+ G KRL+L+G L++
Sbjct: 399  LLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKRLDLAGPLLA 458

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKR 436
             LF  + + M  ++   +   +     +  F L+  I   ++T GL+ +L+TGN+ D K+
Sbjct: 459  KLFRGVIRRMTQDLMSYMKRCIDT---NKNFSLALGIKHSTLTNGLKYSLATGNWGDQKK 515

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                  G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+
Sbjct: 516  AMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 575

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNL+LM +V+      P++      G+E LE    E L  PN+  V  NG  +G 
Sbjct: 576  ACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLE--EYEPLQYPNATKVFVNGTWVGI 633

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI---------- 606
            H+ PK    +++ LRR   I   VS+  + + R   I SD GRV RPL            
Sbjct: 634  HQDPKNLVSLVQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQDPNSESG 693

Query: 607  ADKGISRIKEHHMKEL---------LDGVRSFDDFLREGLIEYLDVNEENNALI------ 651
            A+ G   + + H+  L               +   L+ G IEYLD  EE   +I      
Sbjct: 694  AEVGALILNKEHIARLEADKELGKYHPDYWGWPGLLKSGAIEYLDAEEEETVMICMTPED 753

Query: 652  -----ALYEGDATPDT-------------------THIEIEPFTILGVIAGLIPYPHHNQ 687
                 A   G+   DT                   TH EI P  +LG+ A +IP+P HNQ
Sbjct: 754  LDNFRARKRGEVIEDTSGIGNNRIKTKPNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQ 813

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA
Sbjct: 814  SPRNTYQSAMGKQAMGFFLTNYSKRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNA 873

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P+R+   
Sbjct: 874  IVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEKFEKPNRS--- 930

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
             + +++ H +      LD DG+ APG  +   D+ I K  P+    + +   GQ  +++ 
Sbjct: 931  -DTLRLKHST---YDKLDADGIVAPGVRVSGEDIIIGKTCPINPDNAEL---GQRSAQHV 983

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
                +      E+ +VD+V + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G  
Sbjct: 984  KRDASTPLRSTESGIVDQVVVTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVT 1043

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
             +QED PF+  GI PDLI+NPH  PSRMT+  +IE L  K     G     + F E    
Sbjct: 1044 YRQEDMPFTCEGITPDLIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTEV--- 1100

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
              TV+S+S+ L +HG+   G +++Y G TG  L+A +F GP YYQ+L+HMV DK+HAR  
Sbjct: 1101 --TVDSVSDLLREHGYQSRGFEVLYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARAR 1158

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V +C +CGL
Sbjct: 1159 GPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGL 1218

Query: 1108 LGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +    +  K    C  CKN   I+ + +PYA KLL QEL SMNI  R+
Sbjct: 1219 MTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIAARM 1266


>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
 gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
          Length = 1185

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1169 (36%), Positives = 631/1169 (53%), Gaps = 69/1169 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVN------TGIRKIVRANDRIVSGI-------DP 76
            D ++++  F + +GLV Q LDS+N F+         +  I R +D+   G+        P
Sbjct: 37   DIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMIESMAVIPRQDDQYDPGVTMEEQRDQP 96

Query: 77   SIFLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSH 128
             + L  +DV IG PS         G    L P+ CRL DMTY A   V +    Y   + 
Sbjct: 97   RLVL--QDVVIGNPSHQTHSYFTGGPLPPLFPNECRLRDMTYDAQAQVTLGVELYHPHAD 154

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
            T   T  +N V +GRIPIML+S RC L GKDE EL RL ECP D GGYF+I GTEKVL+ 
Sbjct: 155  TPHDTFLRN-VELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEKVLIA 213

Query: 189  QEQLSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGK--------MYLLLNQ 237
            QE+ + N V   + +KG    + + V  S    ++  +I   + K        +   + Q
Sbjct: 214  QERQAANHVYTFSRQKGLLCEVKSIVEGSLNKPRTLQIIMQYRNKGPGSGFENLMCRVAQ 273

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQEKALEY 294
              + IP+ V+ +AM M +D+E++Q V  D + +A   LL  S+ + + L I+T+E+AL Y
Sbjct: 274  MDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTLQIFTREEALGY 333

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            +  ++ +    +   + +  A S+L    L ++    +  R KC Y+  M+ +++   L 
Sbjct: 334  IGRRLGKQDAMA---NLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALG 390

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
            +    D+D++G+KR++++G L+++  +     +  E+ KT+    + P     F   + I
Sbjct: 391  RHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPR--GVFSFGRVI 448

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
                IT GL R L+TGNF   +    + G+ Q L RL++  +L ++ R+      S K +
Sbjct: 449  HSKLITDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIAASSKAT 508

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  +QWG +CP +TPEG + GL+KN+ALM  ++   +   ++       ++    +
Sbjct: 509  RPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQAR-IDGFRTI 567

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
              E+  +     V  NG ++G  R P+     +R  RR G++   VS+  + + R + + 
Sbjct: 568  GLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGELSNEVSIVRDIRDREIRVF 627

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-------SFDDFLREGLIEYLDVNEEN 647
            SD GR  RPL +A+    ++++  M++LL   +       S+   L++G +E +D  EE+
Sbjct: 628  SDAGRCLRPLFVAENCRLKLRKSGMRDLLVSEKAGGKKSISWKTALKKGYVELIDCEEED 687

Query: 648  NALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
            + LIA+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG  
Sbjct: 688  SLLIAMTPNEVEKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIY 747

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
            A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+M
Sbjct: 748  ASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIM 807

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            ++S+++RGF R    + + A  ++      +    PDR      R++   +S L     D
Sbjct: 808  SRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPDRE---LCRVKRADYSKL-----D 859

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
             DGL  PG  +   DV + K  PL         TG T    R A  T +    E  VVD+
Sbjct: 860  TDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTT--EKGVVDK 917

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  + N D   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  GI PDLI
Sbjct: 918  VMLTMNNN-DRFTKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLI 976

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTV  +IE L GK  V+C  +  G  +  P      V+   + L       
Sbjct: 977  INPHAIPSRMTVAHLIETLAGK--VAC--YKGGEVYATPFCSV-VVDDFGKALHALRSQR 1031

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G + +Y+G TG PL   IF GP +YQ+LKH+  DK+HAR  GP   L RQPTEGRA  G
Sbjct: 1032 YGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEG 1091

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC+++YGAS  + ERL   SD + V VC +CG +   + KL    C  C+N
Sbjct: 1092 GLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICVADTKLNRYQCKGCEN 1151

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS + +PYACKLL QEL SM I+PRL
Sbjct: 1152 DTRISQVLMPYACKLLFQELMSMTILPRL 1180


>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
 gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1260

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1257 (33%), Positives = 655/1257 (52%), Gaps = 163/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F   +GLV Q +DSF+ F  + +++++     I        S  D +I LR 
Sbjct: 25   DCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITLDQPNPASDSDRAIALRR 84

Query: 83   KDVRIG-----QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +V+ G     +PS+T  DG    L P+ CR  ++TYA+P+ V I               
Sbjct: 85   YEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITKKVSIAVENQIPLN 144

Query: 122  --------------------EYVQ-------GSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
                                E+ +       G+  +K    K+ + IGR+PIM++S  C 
Sbjct: 145  ELDDEQHDEMGRTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGRMPIMVKSKICH 204

Query: 155  LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG-----NINA 209
            L  + E +L  L ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK      +  A
Sbjct: 205  LSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPFSYTA 262

Query: 210  SVTSSTET-----------VKSKTVIQMEKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQ 257
             + S+ E            + SK+  +   G+       +VK  IPI +V +A G+ SD+
Sbjct: 263  EIRSALEKGSRLISSLMLKLHSKSPAKGGVGQTIHCTLPYVKVDIPIGIVFRAFGIVSDE 322

Query: 258  EVVQMVGRDPRYSALLLPSIEECANLDIYTQEK--ALEYLEGKVKRSTFGSPPNDREGRA 315
            +++  +  D R    +L  +  C       Q++  AL+++ GK   S        R   A
Sbjct: 323  DILNHICYD-RNDTQMLEMLRPCIEEAFIVQDRNVALDWI-GKRGNSNHTMTREKRVRSA 380

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              IL+   L ++     +   K F++  M  ++++  L +  +DD+D+ G KRL+L+G L
Sbjct: 381  KEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKRLDLAGPL 440

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-D 433
            ++     LF+T++  + + +   L +   S+R F L+  +   +++ GL+ +L+TGN+ D
Sbjct: 441  LA----KLFRTIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGD 496

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
             K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TP
Sbjct: 497  QKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 556

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EG+ACGLVKNL+LM +V+      P+I      G+E LE    E L  PN+  V  NG+ 
Sbjct: 557  EGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE--EYEPLRYPNATKVFLNGVW 614

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G H+ P+     ++  RR   I   VS+  + + R   I SD GRV RP+ + ++    
Sbjct: 615  VGVHQDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQS--- 671

Query: 614  IKEHH----------MKELLDGVR--------------SFDDFLREGLIEYLDVNEENNA 649
               HH           K+L++ +R              ++      G+IEYLD  EE  +
Sbjct: 672  ---HHGAVPQGSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETS 728

Query: 650  LIALYEGD-------------------------------ATPDTTHIEIEPFTILGVIAG 678
            +I +   D                                T   TH EI P  ILG+ A 
Sbjct: 729  MICMTPEDLELYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSMILGICAS 788

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + +
Sbjct: 789  IIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKF 848

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
             +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++ 
Sbjct: 849  RELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQF 908

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
             +P R     + +++ H +      LDDDG+ APG  +   D+ I K SP+      +  
Sbjct: 909  EKPFRN----DTLRLKHGT---YDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDNQEL-- 959

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
             GQ   ++     +      E  ++D V L ++++G   +K  +R T+ P++GDKF+SRH
Sbjct: 960  -GQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTTKIPQIGDKFASRH 1018

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     
Sbjct: 1019 GQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDA 1078

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            + F +      TV+S+S+ L   G+   G +++Y+G TG  L+A +F GP YYQ+L+HMV
Sbjct: 1079 TPFTDV-----TVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1133

Query: 1039 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1098
             DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F 
Sbjct: 1134 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFR 1193

Query: 1099 VQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            V VC +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1194 VHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1250


>gi|193786878|dbj|BAG52201.1| unnamed protein product [Homo sapiens]
          Length = 523

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/540 (60%), Positives = 402/540 (74%), Gaps = 20/540 (3%)

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            M+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+LGV AG
Sbjct: 1    MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAG 60

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            LIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ +
Sbjct: 61   LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEF 120

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            +KL AGQNA VAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N T D++
Sbjct: 121  EKLPAGQNAAVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKV 180

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
            + P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+  +   
Sbjct: 181  MGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGS 233

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
                  +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDKFSSRH
Sbjct: 234  NVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRH 291

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG
Sbjct: 292  GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYG 351

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            +AFG        V+ + E LV+HG++Y GKD + SGITG PL+AYI+ GP+YYQKLKHMV
Sbjct: 352  TAFG-----GSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMV 406

Query: 1039 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1098
            LDKMHAR  GPR +LTRQPTEGR+R+GGLR+GEMERDCLI YGA+ML+ ERLM+SSD FE
Sbjct: 407  LDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGANMLLLERLMISSDAFE 466

Query: 1099 VQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            V VC  CGLLGY      +G C  CK+  ++SS+++PYACKLL QELQSMNI+PRLKL++
Sbjct: 467  VDVCGQCGLLGY------SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 520


>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1194

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1197 (34%), Positives = 640/1197 (53%), Gaps = 115/1197 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFK------ 83
            D + ++  +    GLV Q + SF+ F++  ++ IV  N+ I   I P   L+F       
Sbjct: 36   DAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTI--SIQPE--LQFAPGSMNE 91

Query: 84   -------DVRIGQPSMT-------VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ---- 125
                   D+ +GQ  +         D     + P+  RL ++TY   + V ++       
Sbjct: 92   SRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQDKVVE 151

Query: 126  --GSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTE 183
              GS        + +V +G++P+M+RS  C L G DE+E   + EC  D GGYFII G E
Sbjct: 152  QDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFIINGGE 211

Query: 184  KVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGK------ 230
            KV++  E+++ N V +   K+         + + V +S       ++    KG+      
Sbjct: 212  KVIVAHERMANNFVYVFHKKQPSKFSWVAEVRSQVDASNRPPNQFSIKMYSKGQRRAGGS 271

Query: 231  ----------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSI 277
                      +   +      IP+ ++ +A+   SD+E++  +  D   S ++     S+
Sbjct: 272  FSGGKIFGQTLCASIPYINADIPVAILFRALNCISDKEILDRICYDSTDSHMMEAMRASL 331

Query: 278  EECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPK 337
            EE       TQE AL Y+  +      G     R  R   IL+  FL +V   ++    K
Sbjct: 332  EE--GTPFLTQEDALSYIGSRGTAGGVGREERIRHAR--EILKRHFLPHVSTKDSCESQK 387

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDI 397
             +++  M  R++ A L +   DD+D+ G KRL+++G L+ +LF +LF+  + E  + +  
Sbjct: 388  SYFIGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRNLFRRFVKEAGRYLK- 446

Query: 398  ILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF-KMHRKGMTQVLARLSFIGT 456
              ++  +    ++++   +D I+ GL+  L+TGN+      ++ + G++QVL RL+F  T
Sbjct: 447  --AQADKGDSLNITKAFKKDIISDGLKYALATGNWGTNAAGEVSKTGVSQVLNRLTFAST 504

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R++   +KS K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  V+     
Sbjct: 505  LSHLRRLNTPLQKSGKLTKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAFVSVGSAA 564

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
              L  +    G E+L  +S  ++H      V  NG  +G H   +   + ++ +RRA  I
Sbjct: 565  ERLREILENYGTENLVSISPSDIHESTKVFV--NGCWIGIHNESEDLINNIKLMRRALLI 622

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS----FDDF 632
             + +S+  +   R V   +D GRV RPL I D     +K+ H+  L D  RS    FDD 
Sbjct: 623  PKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLILKKTHVVRLQDHERSDSMNFDDT 682

Query: 633  LREGLIEYLDVNEENNALIALYEGDAT-----PDTTHIEIEPFTILGVIAGLIPYPHHNQ 687
            L+EGL+E+LDV EE  ++IA+  GD          TH EI P  ILGV A +IP+P HNQ
Sbjct: 683  LKEGLVEFLDVEEEETSMIAMNVGDLENRNYCSTYTHCEIHPSMILGVCASIIPFPDHNQ 742

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRN YQ AMGKQAMG    N   RMD+L ++L YPQ+PL+  R+++     +L  G ++
Sbjct: 743  SPRNCYQSAMGKQAMGVYCSNYQIRMDTLAHVLYYPQKPLVVARSLDFPHVKELPPGCDS 802

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR-PDRTGP 806
             VA+  Y+GY+  D+++M+++ +DRG  R +  K    I  +      +R+LR PD T  
Sbjct: 803  IVAITCYTGYNQVDSVIMSQAPIDRGCFRSVFYKNIFEIPVRV-----ERLLRYPDST-- 855

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES--------PLETRGSIMSP 858
                  VV   N     LD DGL  PG+ +  +D+ I K +         ++ + +++  
Sbjct: 856  ------VVGRRNGDYTKLDIDGLIFPGKNVLGDDIIIGKTALPRNLFNDEMDDQTNLIKK 909

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
               T     S R + KG      ++D V L S++ GD   K  +R  R P++GDKF+SRH
Sbjct: 910  DDST-----SLRHSEKG------IIDSVILTSNEEGDSFTKVKMRAIRIPQIGDKFASRH 958

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKG  G   +QED PF++ GI PD+I+NPH  PSRMT+G +IE L  K  V+C    + 
Sbjct: 959  GQKGTVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRMTIGHLIECLASK--VAC----FK 1012

Query: 979  SAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
               G+ +   D TVE IS  L + G+   G +++Y G TG  +   IF+GP YYQ+LKHM
Sbjct: 1013 GEEGDATPFQDVTVEHISNDLHRLGYQKRGNEVMYDGWTGRKMDTMIFLGPTYYQRLKHM 1072

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+H+R  GP  +LTRQPTEGR+R+GGLR GEMERDC++++GA+  + ERL   SD +
Sbjct: 1073 VDDKIHSRSRGPLQILTRQPTEGRSRHGGLRFGEMERDCMVSHGAARFLKERLFDVSDCY 1132

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             V VCR+CGL+   N + +  +C  C+N  NI  + LPYACKLL QEL +M I PR+
Sbjct: 1133 TVHVCRICGLICEANLRQQKYLCRGCQNSTNICQVGLPYACKLLFQELMAMQIAPRM 1189


>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
 gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1177

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1192 (35%), Positives = 647/1192 (54%), Gaps = 96/1192 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSI- 78
            D + L+  + + RGLV Q L+SFN F+   +++IV  +  I+            ID  + 
Sbjct: 20   DSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQIDTKVR 79

Query: 79   -FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYV------QGSHTE 130
              L+F  + + +PS+   +GV+  L P+  RL ++TY++P+ V+ E         GS T 
Sbjct: 80   YVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLEDDGSETL 139

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
                  + + + +IPIMLRS  C  +   E EL   GEC  D GGYFII G EKVL+ QE
Sbjct: 140  VYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIINGMEKVLVGQE 199

Query: 191  QLSKNRVII---DTDKKGNINASVTSSTETVKSKTVIQME-------KGKMYLLLNQFVK 240
            +++ N V +   +   K    A + S+ E +++ +   ++       +G++   L     
Sbjct: 200  RMANNFVYLFQKNQPSKYTWIAEIRSNREGMQATSGFSVKLRGSDGNQGQIVATLPYIRT 259

Query: 241  KIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEG 297
             IPI ++ +A+G+ SD++++        D +  ALL PS+EE    + ++Q+  L+++ G
Sbjct: 260  DIPIAILFRALGVLSDKDILSRCVYDFNDTQMLALLRPSLEE--TFEFFSQDVCLDFI-G 316

Query: 298  KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
            K +  T G+    R   A  +     L +V V + +   K +++  M+ ++    L +  
Sbjct: 317  K-RGPTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGYMVHKLCLGALGRVP 375

Query: 358  MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRD 417
             DD+D+ G KRL+L+G LV+  F   F+ M+ +V++   ++         FD++  I   
Sbjct: 376  EDDRDHFGKKRLDLAGPLVAASFGQCFRKMMKDVRR---LLQRNIDNGKEFDVAGVIRSA 432

Query: 418  S-ITVGLERTLSTGNFDV-KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
            S IT  ++   +TGN+   K  K+ R G++QVL+RL+F   L ++ R++    +  K + 
Sbjct: 433  SYITQTIQYQFATGNWGKDKDGKIIRTGVSQVLSRLTFTSALSYLRRLNTPLGREGKFAK 492

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  + WGM+CP +TPEG + GLVKNLALM  ++       + +     G++ ++ + 
Sbjct: 493  PRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGYRPYAIRTFLDEWGMDSIDEIP 552

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADV------MRKLRRAGKIGEFVSVFVNEKQR 589
             E +       V  NG  +G      CF D       +R +RR+G+I    S+ ++   R
Sbjct: 553  PEGIKR--KIKVFLNGNWVG------CFDDSEDSISNLRMIRRSGEIPYETSIVLDVVNR 604

Query: 590  CVYIASDGGRVCRPL-VIADKGISRIKEHHMKELLDGVRSFD-------------DFLRE 635
             V + +D GR  RPL ++ + G  +IK+ H+  LL+   SFD             D +  
Sbjct: 605  EVKLFTDSGRSMRPLYIVGEDGDLKIKKSHINSLLNENPSFDEKMEDEKHDYTWDDLVNT 664

Query: 636  GLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSP 689
            G+IEY+D  EE  ++IA++  D   D       TH EI P  ILGV A +IP+P HNQSP
Sbjct: 665  GIIEYIDCEEEETSMIAMFINDLRIDRGYCSTYTHCEIHPSLILGVCASIIPFPDHNQSP 724

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RN YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +  + + +L AG N  V
Sbjct: 725  RNVYQSAMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTRAMTYMRFRELPAGINCIV 784

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
             +M YSGY+ ED+++MN+SS+DRG  R +  + Y +  ++  ++  +    P+       
Sbjct: 785  GIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQVGSNLIEAFELPNPEEVSGL 844

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL--ETRGSIMSPTGQTDSRYR 867
            R    ++ NL     D DGL  PG  +  +D+ I K  P+  E R + +    + D    
Sbjct: 845  RFG--NYGNL-----DLDGLIEPGNRVLGDDIIIGKVGPINPEDRDTRIQKLTKRDCSV- 896

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
              R +  G      VVD V L ++  G    K  +R  R P +GDKF+SRHGQKG  G  
Sbjct: 897  GIRTSEHG------VVDEVLLSTNSKGVKFAKVKVRTIRIPHVGDKFASRHGQKGTIGIT 950

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
             + ED PF++ GI PD+IMNPH  PSRMT+G +IE L GKA    G     + F +    
Sbjct: 951  YRTEDMPFTQDGIIPDIIMNPHAIPSRMTIGHLIECLLGKACAIQGLEGDATPFTKI--- 1007

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
              TVE IS  L   GF  NG +++Y+G TG  L++ IF+GP YYQ+LKHMV DK+HAR  
Sbjct: 1008 --TVEEISSRLHSSGFQKNGNEVMYNGHTGKRLESRIFIGPTYYQRLKHMVDDKIHARAR 1065

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            G   MLTRQP EGRAR GGLR GEMERDC+I++GA+ ++ ERL    D + V VC +CGL
Sbjct: 1066 GAVTMLTRQPREGRAREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCEMCGL 1125

Query: 1108 LGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            +   +   +   C+ C N   IS + LPYACKLL+QEL +M+I PRL L  A
Sbjct: 1126 ICIADLGKQHFECNACNNKSRISQICLPYACKLLLQELMAMSIYPRLHLQTA 1177


>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
            CQMa 102]
          Length = 1263

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1257 (33%), Positives = 647/1257 (51%), Gaps = 161/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F   +GLV Q  DSF+ F  T I+ +V     I        S     + LR 
Sbjct: 26   DCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSAAGEKVALRR 85

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  V + +P+++  DG    L P+ CR  ++TYA+P+ +NI               
Sbjct: 86   YEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSRAVEQDIPLK 145

Query: 122  -------------------------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLY 156
                                     E  +   T K+   KN V +G++PIM++S  C L 
Sbjct: 146  ELDDAQREELKRTGEMPTKLVWEVEESAEDDDTGKSEDWKNMVFVGKLPIMVKSKICHLS 205

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN---------I 207
             + E  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           I
Sbjct: 206  REQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPYTYTAEI 263

Query: 208  NASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             +++   +  + S T+    KG          ++  L      +PI +V +A+G+ SD++
Sbjct: 264  RSALEKGSRLISSLTLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDED 323

Query: 259  VVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            ++  +  D + S +L    P IEE     +  +E AL+++  +  R   G   + R   A
Sbjct: 324  ILNHICYDRKDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGRDKRVRVA 381

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L
Sbjct: 382  KDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPL 441

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+TGN+ D 
Sbjct: 442  LAKLFRGIIRRMNTELSNYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLATGNWGDQ 498

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 499  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 558

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG+ +
Sbjct: 559  GQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVE--EYEPLRYPHATKIFVNGVWV 616

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA---DKGI 611
            G H+ PK     +   RR   +   VS+    + +   I SD GRV RP+      D   
Sbjct: 617  GVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPE 676

Query: 612  SRIKEHHM---KELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIALY 654
            + I++ H+   K+L++ +                ++  +R G +EYLD  EE  A+I + 
Sbjct: 677  TGIEKGHLVLTKDLVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETAMICMT 736

Query: 655  EGD----------------------------ATPDT---THIEIEPFTILGVIAGLIPYP 683
              D                              P T   TH EI P  ILG+ A +IP+P
Sbjct: 737  PEDLELYRLQKAGVALDDDIGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFP 796

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L A
Sbjct: 797  DHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPA 856

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P  
Sbjct: 857  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKP-- 914

Query: 804  TGPGAERMQVVHHSNLLLL-----ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
                       H S L +       LDDDG+ APG  +   D+ I K +P++     +  
Sbjct: 915  ----------FHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQESQDL-- 962

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
             G   S ++    +      E  +VD V L  + +    +K  +R T+ P++GDKF+SRH
Sbjct: 963  -GTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRH 1021

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K     G     
Sbjct: 1022 GQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDA 1081

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+HMV
Sbjct: 1082 TPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1136

Query: 1039 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1098
             DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F 
Sbjct: 1137 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1196

Query: 1099 VQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1197 VHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1253


>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
            VdLs.17]
          Length = 1260

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1264 (34%), Positives = 657/1264 (51%), Gaps = 177/1264 (14%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F   +GLV Q +DSF+ F  + +++++     I        S  D +I LR 
Sbjct: 25   DCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITLDQPNPASDSDRAIALRR 84

Query: 83   KDVRIG-----QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +V+ G     +PS+T  DG    L P+ CR  ++TYA+P+ V I               
Sbjct: 85   YEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITKKVSIAVENQIPLN 144

Query: 122  --------------------EYVQ-------GSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
                                E+ +       G+  +K    K+ + IGR+PIM++S  C 
Sbjct: 145  ELDDEQHDEMARTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGRMPIMVKSKICH 204

Query: 155  LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSS 214
            L  + E +L  L ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK     S  S 
Sbjct: 205  LSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQ--PSPFSY 260

Query: 215  TETVKSKTVIQMEKGK-----MYLLLNQ-----------------FVK-KIPIMVVMKAM 251
            T  ++S     +EKG      + L L+                  +VK  IPI +V +A 
Sbjct: 261  TAEIRSA----LEKGSRLISSLMLKLHSTSPAKGGVGQTIHCTLPYVKVDIPIGIVFRAF 316

Query: 252  GMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            G+ SD++++  +     D +   +L P IEE     +  +  AL+++ GK   S      
Sbjct: 317  GIVSDEDILNHICYDRNDTQMLEMLRPCIEEA--FIVQDRNVALDWI-GKRGNSNHTMTR 373

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A  IL+   L ++     +   K F++  M  ++++  L +  +DD+D+ G KR
Sbjct: 374  EKRVRSAKEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKR 433

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTL 427
            L+L+G L++     LF+T++  + + +   L +   S+R F L+  +   +++ GL+ +L
Sbjct: 434  LDLAGPLLA----KLFRTIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSL 489

Query: 428  STGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            +TGN+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG+
Sbjct: 490  ATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGL 549

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            +CP +TPEG+ACGLVKNL+LM +V+      P+I      G+E LE    E L  PN+  
Sbjct: 550  VCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLE--EYEPLRYPNATK 607

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG+ +G H+ P+     ++  RR   I   VS+  + + R   I SD GRV RP+ +
Sbjct: 608  VFLNGVWVGVHQDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFV 667

Query: 607  ADKGISRIKEHH----------MKELLDGVR--------------SFDDFLREGLIEYLD 642
             ++       HH           K+L++ +R              ++      G+IEYLD
Sbjct: 668  VEQS------HHGAVPQGSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLD 721

Query: 643  VNEENNALIALYEGD-------------------------------ATPDTTHIEIEPFT 671
              EE  ++I +   D                                T   TH EI P  
Sbjct: 722  AEEEETSMICMTPEDLELYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSM 781

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR
Sbjct: 782  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTR 841

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            ++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++  
Sbjct: 842  SMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVG 901

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
             +  ++  +P R     + +++ H +      LDDDG+ APG  +   D+ I K SP+  
Sbjct: 902  INLVEQFEKPFRN----DTLRLKHGT---YDKLDDDGIVAPGVRVSGEDIIIGKTSPINP 954

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
                +   GQ   ++     +      E  ++D V L ++++G   +K  +R T+ P++G
Sbjct: 955  DNQEL---GQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTTKIPQIG 1011

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K    
Sbjct: 1012 DKFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTL 1071

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G     + F +      TV+S+S+ L   G+   G +++Y+G TG  L+A +F GP YY
Sbjct: 1072 KGMEGDATPFTDV-----TVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPTYY 1126

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL 
Sbjct: 1127 QRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLF 1186

Query: 1092 VSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
              SD F V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI
Sbjct: 1187 EVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNI 1246

Query: 1151 VPRL 1154
              R+
Sbjct: 1247 AARM 1250


>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 8904]
          Length = 1757

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1169 (35%), Positives = 635/1169 (54%), Gaps = 145/1169 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI----------VSGIDPSIF 79
            D ++++  F   +GLV+Q L+SFN FV   ++++V  N R+          V G +   +
Sbjct: 35   DYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHTGVMGDETRRY 94

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE------- 130
             + F  + + + +MT +DG +  L P   RL ++TYAAP+ V+++    S  +       
Sbjct: 95   EITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLTYAAPLYVDMKKSTLSAGDVDDPIEA 154

Query: 131  --KTTMEKNDVV---------IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
              K  ++ N V+         IG++P+M+RS  C+L+G  +     L ECP D GGYFII
Sbjct: 155  DWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECPYDQGGYFII 214

Query: 180  KGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTET---VKSKTVIQM----- 226
             G+EKVL+ QE+++ N V +   KK + +     + VTS  E      SKTV++M     
Sbjct: 215  NGSEKVLIAQERMAANTVYVF--KKADPSPVTYLSEVTSQMEKGGKTPSKTVVKMYLRAQ 272

Query: 227  ---EKGKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEE 279
                 G +  +   + K  IPI++V +A+G+  D++V+  +  +P  +A+L    P IEE
Sbjct: 273  DKATTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLEMLRPCIEE 332

Query: 280  CANLDIYTQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPK 337
                 I  ++ AL+++   G+ ++ T       R+  AF IL+  FL +V V       K
Sbjct: 333  A--FSIQDRDTALDFIGRRGQQEKGTRAV----RQRAAFDILQKEFLPHVSVSEGFESRK 386

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDI 397
             F++  M+ R+  A L +  +DD+D+ G KRL+L+G L++ LF  LFK +  +V + +  
Sbjct: 387  AFFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHLQK 446

Query: 398  ILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGT 456
             +        F L   I    IT GL+ +L+TGN+ D  +    R G++QVL R +F  T
Sbjct: 447  CVET---HKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFAST 503

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM++++     
Sbjct: 504  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYS 563

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
             P++      G+E  +    E    PN+  V  NG+ +G HR      + + ++RR G++
Sbjct: 564  APVMEFLEEWGLEPQD----EYGSAPNATKVFVNGVWMGIHRDAVKLHENLLEMRRGGQL 619

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS--RIKEHH----------MKELLD 624
               VS+  + ++R + + +D GRVCRPL I D+     R+K  H          ++E +D
Sbjct: 620  KHEVSIVRDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLENIADGLEEAVD 679

Query: 625  GVRSFDDFLREGLIEYLDVNEENNALIALYEGD--------------------------- 657
            G  ++D+ L +G+IEY+D  EE   LIA+   D                           
Sbjct: 680  G-SAWDELLYQGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVARAQAAHTLEAFDP 738

Query: 658  --------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
                     + + TH+EI P  ILGV A ++P+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 739  TARVKSSSWSQNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGIHLTNY 798

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD++  +L YPQ PL TT++++ + +  L AGQNA VA++ YSGY+ ED+++MN+SS
Sbjct: 799  QLRMDTMANILYYPQSPLATTQSMKYLKFSDLPAGQNAIVAILCYSGYNQEDSVIMNQSS 858

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            +DRG  R +  + YT   +       +   +PDR     E +++ H S+     LD+DGL
Sbjct: 859  IDRGLFRSLYYRAYTDTEKMVGMQKVESFEKPDRN----ETLRMKHGSSDRYAKLDNDGL 914

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG-----PDGETCVVD 884
              P   +  +D+ I K +P+        P    +   RSA  T +         E  VVD
Sbjct: 915  ITPATNVNGDDIIIGKTAPI--------PPDSEELGQRSATHTKRDVSTPMKSTEQGVVD 966

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V + ++ +G   +K  IR TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+
Sbjct: 967  QVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDI 1026

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMT+G ++E L  K     GR    + F E      TVES+S+ L + G+ 
Sbjct: 1027 IINPHAIPSRMTIGHLVECLLSKLATLTGREGDATPFTEL-----TVESVSKLLRQRGYQ 1081

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++Y G TG  L+A ++ GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+
Sbjct: 1082 SRGLEVMYHGHTGKKLRAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRD 1141

Query: 1065 GGLRVGEMERDCL-------IAYGASMLI 1086
            GGLR GEMERDCL       +A G SM I
Sbjct: 1142 GGLRFGEMERDCLHGDTRVTLASGVSMRI 1170



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%)

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            +C+I++G +  + ER+  SSD F + VC  CGL+   N K +   CS C+N   IS + +
Sbjct: 1671 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEFHCSVCRNSTQISQIYI 1730

Query: 1135 PYACKLLIQELQSMNIVPRL 1154
            PYA KLL QELQ+MN+  R+
Sbjct: 1731 PYAAKLLFQELQAMNVTVRM 1750


>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
            ARSEF 23]
          Length = 1262

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1257 (33%), Positives = 647/1257 (51%), Gaps = 161/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F   +GLV Q  DSF+ F  T I+ +V     I        S     + LR 
Sbjct: 25   DCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSAAGEKVALRR 84

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  V + +P+++  DG    L P+ CR  ++TYA+P+ +NI               
Sbjct: 85   YEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSRAVEQDIPLK 144

Query: 122  -------------------------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLY 156
                                     E  +   T K+   KN V +G++PIM++S  C L 
Sbjct: 145  ELDDAQREELKRTGEMPTKLVWELEESAEDDDTGKSEDWKNMVFVGKLPIMVKSKICHLS 204

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN---------I 207
             + E  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           I
Sbjct: 205  REQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPYTYTAEI 262

Query: 208  NASVTSSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             +++   +  + S ++    KG          ++  L      +PI +V +A+G+ SD++
Sbjct: 263  RSALEKGSRLISSLSLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDED 322

Query: 259  VVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            ++  +  D + S +L    P IEE     +  +E AL+++  +  R   G   + R   A
Sbjct: 323  ILNHICYDRKDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGRDKRVRVA 380

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L
Sbjct: 381  KDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPL 440

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+TGN+ D 
Sbjct: 441  LAKLFRGIIRRMNTELSNYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLATGNWGDQ 497

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 498  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 557

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG+ +
Sbjct: 558  GQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVE--EYEPLRYPHATKIFVNGVWV 615

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA---DKGI 611
            G H+ PK     +   RR   +   VS+    + +   I SD GRV RP+      D   
Sbjct: 616  GVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPE 675

Query: 612  SRIKEHHM---KELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIALY 654
            + I++ H+   KEL++ +                ++  +R G +EYLD  EE  ++I + 
Sbjct: 676  TGIEKGHLVLTKELVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMT 735

Query: 655  EGD----------------------------ATPDT---THIEIEPFTILGVIAGLIPYP 683
              D                              P T   TH EI P  ILG+ A +IP+P
Sbjct: 736  PEDLELYRLQKAGVALDDDIGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFP 795

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L A
Sbjct: 796  DHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPA 855

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P  
Sbjct: 856  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKP-- 913

Query: 804  TGPGAERMQVVHHSNLLLL-----ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
                       H S L +       LDDDG+ APG  +   D+ I K +P++     +  
Sbjct: 914  ----------FHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQESQDL-- 961

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
             G   S ++    +      E  +VD V L  + +    +K  +R T+ P++GDKF+SRH
Sbjct: 962  -GTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRH 1020

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K     G     
Sbjct: 1021 GQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDA 1080

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+HMV
Sbjct: 1081 TPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1135

Query: 1039 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1098
             DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F 
Sbjct: 1136 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1195

Query: 1099 VQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1196 VHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1252


>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1286

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1256 (34%), Positives = 649/1256 (51%), Gaps = 157/1256 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D ++++  +    GLV Q +DSFN F  + I+ +V     +           G D ++  
Sbjct: 47   DCWEVISAYFDKNGLVSQQIDSFNEFTQSTIQSLVNEYAHLTLDHPNPGDDEGRDIAMRR 106

Query: 80   --LRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAP----------ILVN--IEYV 124
              + F+DV + +P++T        L P+ CR  ++TY+AP          I +N  I Y 
Sbjct: 107  YDIHFQDVLLSKPTLTETTGETTFLLPYECRDRNLTYSAPMYCKVTKRARIAINEPIPYH 166

Query: 125  Q------------GSHTEKTTMEKND---------------------VVIGRIPIMLRSC 151
            +            G H      E+ D                     + +G++PIM++S 
Sbjct: 167  ELDDEQREHLAKTGEHPTTIRWEEEDTGPREAPRDGPLKGDKDKADYIFLGKLPIMVKSK 226

Query: 152  RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 211
             C LYG+D+  L  L ECP D GGYFII G+EKVL+ QE+ + N V I     G   A V
Sbjct: 227  VCHLYGEDDDSLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQIFKKPPGGSVAYV 286

Query: 212  TS------------STETVKSKTVIQMEKGKMY----LLLNQFVKKIPIMVVMKAMGMES 255
                          S+  +K  T    EKG++     + L    + I + +V +A+G+ S
Sbjct: 287  AEIRSALEKGSRLISSLQMKLHTKASPEKGRLANTVSVTLPYVREDISLAIVFRALGVVS 346

Query: 256  DQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            D++++  +  D   + +L    P IEE     I  +E AL+++ GK      G    +R 
Sbjct: 347  DEDILNHICYDRTDTQMLEALRPCIEEA--FCIQDREVALDFI-GKRGNGNAGQNRVNRI 403

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
              A  +L+   L ++         K F++  M+ ++++  L +   DD+D+ G KRL+L+
Sbjct: 404  RAAKDLLQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKRLDLA 463

Query: 373  GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
            G L++ LF  + + M  ++   +   +     +  F L+  I   ++T  L+ +L+TGN+
Sbjct: 464  GPLLAKLFRGVIRRMTQDLMSYMKRCIDT---NKNFSLALGIKHSTLTNALKYSLATGNW 520

Query: 433  DVKRFKMHR-KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
              ++  M    G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +
Sbjct: 521  GEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 580

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEG+ACGLVKNL+LM +V+      P+I       +E LE    E L  PN+  V  NG
Sbjct: 581  TPEGQACGLVKNLSLMCYVSVGTPAEPIIEFMIARNMEVLE--EYEPLRYPNATKVFVNG 638

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD--- 608
              +G H+ PK    +++ LRR   I   VS+  + + R   I SD GRV RPL   +   
Sbjct: 639  TWVGVHQDPKHLVSLVQGLRRKNIINFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQED 698

Query: 609  -------KGISRIKEHHMKEL---------LDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                   KG   +K+ H+  L               +D  L+ G +EYLD  EE  A+I 
Sbjct: 699  NGENGVEKGQLLLKKEHIARLERDKELGKYHPDYWGWDGLLKSGAVEYLDAEEEETAMIC 758

Query: 653  LYEGD------------------------------ATPDTTHIEIEPFTILGVIAGLIPY 682
            +   D                               T   TH EI P  +LGV A +IP+
Sbjct: 759  MTPEDLDMYRLTKLGFQVHDNSGVGNNRIRTKMNMTTHAYTHCEIHPSMLLGVCASIIPF 818

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L 
Sbjct: 819  PDHNQSPRNTYQSAMGKQAMGFFLTNYSHRMDTMANILYYPQKPLATTRSMEFLKFRELP 878

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  +   +P+
Sbjct: 879  AGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIVEMFEKPN 938

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM-SPTGQ 861
            RT    E +++ H +      LD DG+ APG  +  +D+ I K  P+    + + S T Q
Sbjct: 939  RT----ETLRMKHST---YDKLDADGIVAPGTRVSGDDIIIGKTCPINPENAELGSRTAQ 991

Query: 862  TDSRYRSA--RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
               R  S   R T  G      +VD V L ++++G   +K  +R T+ P++GDKF+SRHG
Sbjct: 992  HVKRDVSTALRSTENG------IVDSVILTTNQDGMRYVKVRVRTTKIPQIGDKFASRHG 1045

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     +
Sbjct: 1046 QKGTIGVTYRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDAT 1105

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F E      TV+S+S  L +HG+   G +++Y+G TG  L+A +F GP YYQ+L+HMV 
Sbjct: 1106 PFTEV-----TVDSVSALLREHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVD 1160

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V
Sbjct: 1161 DKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRV 1220

Query: 1100 QVCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +C +CGL+    +  K    C  CKN   I+ + +PYA KLL QEL +MNI  R+
Sbjct: 1221 HICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHIPYAAKLLFQELMAMNIAARM 1276


>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1193

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1223 (33%), Positives = 629/1223 (51%), Gaps = 185/1223 (15%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI----------VSGIDPSIF 79
            D + ++  F + +GLV+Q L+SFN F+   +++IV  + R+          V+G +   +
Sbjct: 53   DYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETRRY 112

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------- 123
             + F  + + + + T +DG +  L P   RL ++TY+AP+ V+I+               
Sbjct: 113  EISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEA 172

Query: 124  -----------VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLD 172
                       V+G+  EKT+       IG++P+M+RS  C+L+G  + +   +GECP D
Sbjct: 173  DWQPAVGDDGEVEGAEEEKTS-------IGKVPVMVRSNFCLLHGLPDDQCHEIGECPYD 225

Query: 173  PGGYFIIKGTEKVLLIQEQLSKNRVII---DTDKKGNINASVTSSTET---VKSKTVIQM 226
             GGYFII G+EKVL+ QE+++ N V +       +    A + S  E    V + T ++M
Sbjct: 226  QGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRM 285

Query: 227  EK-------GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                     G + + L      IP++VV +A+G+  D++V+  +     D     +L PS
Sbjct: 286  YARASGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPS 345

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            IEE  +  +  ++ AL+++  + +     +P   R+  AF IL   FL +V         
Sbjct: 346  IEE--SFAVQDRDTALDFIGRRGQHEK--APRAQRQRAAFDILHKEFLPHVSTAEGFESK 401

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
            K +++  M    VE               NK   L+  +      D  K  ++       
Sbjct: 402  KAYFLGYMC---VEQ--------------NKEFALNMAIRPNTITDGLKYALA------- 437

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGT 456
                            +  RD+   G+ + L+                     R +F  T
Sbjct: 438  -------------TGNWGKRDNTRAGVSQVLN---------------------RYTFAST 463

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R +    +  K + PR L  + WGM+CP +TPEG ACGLVKNLALM++++     
Sbjct: 464  LSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYS 523

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
             P++      G+EDL     E    P +  V  NG+ +G HR      + + ++RR G++
Sbjct: 524  APVMEFLEEWGLEDL----SEYQDAPTATKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQL 579

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----------GISRIKEHHMKELLDGV 626
               VS+  + ++R + + +D GRVCRPL I D+           I RI +   + LL G 
Sbjct: 580  KYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSG- 638

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGD----------------------------- 657
             ++D  L EG++EY+D  EE   LIA+   D                             
Sbjct: 639  -AWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAA 697

Query: 658  ------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                   +   TH+EI P  ILGV A ++P+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 698  RIKSTVWSQQYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQL 757

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+++ +L YPQ+PL TTR++E + + +L AGQNA VA+M YSGY+ ED+++MN+SS+D
Sbjct: 758  RMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSID 817

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R +  + YT   +      ++ I +PDR     E +++ H +      LD DGL A
Sbjct: 818  RGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRN----ETLRMKHGTGDRYAKLDVDGLVA 873

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +  +D+ I K +PL      +    Q  ++ R      K    E  VVD+V L ++
Sbjct: 874  PGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTK-RDISTPLKST--EQGVVDQVMLSTN 930

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
              G++ +K  +R TR P++GDKF+SRHGQKG  G   +QED PF+  G+ PD+I+NPH  
Sbjct: 931  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 990

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G ++E L  K     G     + F E      TVE++S+ L   G+   G +++
Sbjct: 991  PSRMTIGHLVECLLSKVSTLTGAEGDATPFTEL-----TVEAVSKVLRAKGYQSRGFEVL 1045

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y G TG  LQA ++ GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR GE
Sbjct: 1046 YHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGE 1105

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDC+I++G +  + ER+  SSD F + VC VCGL+   N K +   CS C+N   IS 
Sbjct: 1106 MERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQ 1165

Query: 1132 MKLPYACKLLIQELQSMNIVPRL 1154
            + +PYA KLL QELQ+MNI  R+
Sbjct: 1166 VYIPYAAKLLFQELQAMNIACRM 1188


>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1185

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1169 (35%), Positives = 632/1169 (54%), Gaps = 69/1169 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVN------TGIRKIVRANDRIVSGI-------DP 76
            D ++++  F + +GLV Q LDS+N F+         +  I R +D+   G+        P
Sbjct: 37   DIWEVISSFFREKGLVHQQLDSYNDFLMRIPKMIESMAVIPRQDDQYDPGVTMEEQRDQP 96

Query: 77   SIFLRFKDVRIGQPSMTVD-----GVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSH 128
             + L  +DV IG PS         G    L P+ CRL DMTY A   V +    Y   + 
Sbjct: 97   RLVL--QDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLGVELYHPHAD 154

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLI 188
            T   T  +N V +GRIPIML+S RC L GKDE EL RL ECP D GGYF+I GTEKVL+ 
Sbjct: 155  TPHDTFLRN-VELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEKVLIA 213

Query: 189  QEQLSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGK--------MYLLLNQ 237
            QE+ + N V   + +KG    + + V  S    ++  +I   + +        +   + Q
Sbjct: 214  QERQAANHVYTFSRQKGLLCEVKSIVEGSLNKPRTLQIIMPYRNRGPGSGFESLMCRVAQ 273

Query: 238  FVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQEKALEY 294
              + IP+ V+ +AM M +D+E++Q V  D + +A   LL  S+ + + L I+T+E+AL Y
Sbjct: 274  MDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTLQIFTREEALGY 333

Query: 295  LEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLN 354
            +  ++ +    +   + +  A S+L    L ++    +  R KC Y+  M+ +++   L 
Sbjct: 334  IGRRLGKQDAMA---NLQREAESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALG 390

Query: 355  KDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
            +    D+D++G+KR++++G L+++  +     +  E+ KT+    + P     F   + I
Sbjct: 391  RHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPR--GVFSFGRVI 448

Query: 415  VRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
                +T GL R L+TGNF   +    + G+ Q L RL++  +L ++ R+      S K +
Sbjct: 449  HSRLVTDGLRRCLATGNFGDLKTGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIAASSKAT 508

Query: 475  GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
             PR L  +QWG +CP +TPEG + GL+KN+ALM  ++   +   ++       ++    +
Sbjct: 509  RPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQAR-IDGFRTI 567

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
              E+  +     V  NG ++G  R P+     +R  RR G++   VS+  + + R + + 
Sbjct: 568  GLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGELSNEVSIVRDIRDREIRVF 627

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-------SFDDFLREGLIEYLDVNEEN 647
            SDGGR  RPL + +    ++++  M++LL   +       S++  L++G +E +D  EE+
Sbjct: 628  SDGGRCLRPLFVVENCHLKLRKSSMRDLLVSEKAGGKKSISWNTVLKKGYVELIDCEEED 687

Query: 648  NALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
            + L+A+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG  
Sbjct: 688  SLLVAMTPSEVEKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIY 747

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
            A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+M
Sbjct: 748  ASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSNDLPAGHNAVVAISCYSGYNQEDSIIM 807

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            ++S+++RGF R    + + A  ++      +    P+R      R++   +S L     D
Sbjct: 808  SRSAVERGFFRSAFWRSFKAKEERQKRDALETFENPNRE---VCRVKRADYSKL-----D 859

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
             DGL  PG  +   DV + K  PL         TG T    R A  T +    E  VV++
Sbjct: 860  TDGLIKPGMRVLGGDVVVGKTIPLPEADLDKLTTGNTKITKRDASITSRTT--EKGVVEK 917

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L  + + D   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  G+ PDLI
Sbjct: 918  VMLTMN-SSDRFAKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGVVPDLI 976

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMTV  +IE L GK  V+C  +  G  +  P      V+   + L   G   
Sbjct: 977  INPHAIPSRMTVAHLIETLAGK--VAC--YKGGEVYATPFCSV-VVDDFGKALHALGSQR 1031

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G + +Y+G TG PL   IF GP +YQ+LKH+  DK+HAR  GP   L RQPTEGRA  G
Sbjct: 1032 YGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEG 1091

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDC+++YGAS  + ERL   SD + V VC  CG +   + KL    C  C+N
Sbjct: 1092 GLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNHCGTICVADTKLNRYQCKGCEN 1151

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
               IS + +PYACKLL QEL SM I+PRL
Sbjct: 1152 DTRISQVLMPYACKLLFQELMSMTILPRL 1180


>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
          Length = 1207

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1207 (34%), Positives = 630/1207 (52%), Gaps = 155/1207 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV Q LDSF+ FV T ++++V  N ++        S  D  I LR 
Sbjct: 24   DCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTLDQNNPPSSHDNPIALRR 83

Query: 83   KDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
             +++ G     +P+MT  DG ++ + P   RL ++TY++P+ + +               
Sbjct: 84   YEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQVAVERPVPLN 143

Query: 122  --------EYVQG-SHTEKTTMEKND--------------VVIGRIPIMLRSCRCVLYGK 158
                    E V G  H  +   E  D              V IG++P+ML+S  C+L G 
Sbjct: 144  ELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMMLKSEFCILKGL 203

Query: 159  DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK---------GNINA 209
            DE EL    ECP D GGYFII G+EKVL+ QE+ + N  I+   KK           I +
Sbjct: 204  DEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKPANSAVSYLAEIRS 261

Query: 210  SVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            ++   +  + S  +   +KG          +   L      IPI +V +A+G+ SD++++
Sbjct: 262  ALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDIL 321

Query: 261  QMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AF 316
              +     D +   +L P IEE     I  +E AL+++    KR    S   D+  + A 
Sbjct: 322  NHICYDRNDTQMLEMLKPCIEEA--FVIQDREVALDFIG---KRGNGTSLTRDKRIKYAR 376

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L+
Sbjct: 377  DIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLL 436

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF +LF+ + ++V + +   +     +  F+L+  +   +IT GL+ +L+TGN+ D K
Sbjct: 437  AKLFRNLFRRLTTDVYRYLQRCVEN---NREFNLTLGVKSTTITNGLKYSLATGNWGDQK 493

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 494  KAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 553

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM +VT      P++       +E LE    E L  PN+  V  NG+ +G
Sbjct: 554  QACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLE--EYEPLRAPNATKVFVNGVWVG 611

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI-------AD 608
             HR P      ++ LRR+  I   VS+    + R   I +D GRVCRPL++       A+
Sbjct: 612  IHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSAN 671

Query: 609  KGISRIKEHHMKELLD----------------GVRSFDDFLREGLIEYLDVNEENNALIA 652
            KG   + + H++ L D                G   F   + +G++EYLD  EE   +I 
Sbjct: 672  KGNLVLNKDHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMIT 731

Query: 653  LYEGDAT------------PD-------------------TTHIEIEPFTILGVIAGLIP 681
            +   D              PD                    TH EI P  ILG+ A +IP
Sbjct: 732  MTPEDLDISRQLQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIP 791

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRN YQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 792  FPDHNQSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFREL 851

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+M YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P
Sbjct: 852  PAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKP 911

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+     +             LDDDG+ APG  +   D+ I K +P+      M   GQ
Sbjct: 912  YRSDTLKLKQGTYDK-------LDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEM---GQ 961

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
                +     +      E+ +VD+V + ++  G   +K  +R T+ P++GDKF+SRHGQK
Sbjct: 962  RTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQK 1021

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G    Q+D PF+  G+ PDLI+NPH  PSRMT+  +IE    K     G     + F
Sbjct: 1022 GTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPF 1081

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             E      TV+S+S+ L  HG+   G +++Y G TG  + A +F+GP YYQ+L+HMV DK
Sbjct: 1082 TEV-----TVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDK 1136

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+I++GAS  + ERL   SD F V +
Sbjct: 1137 IHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAFRVHI 1196

Query: 1102 CRVCGLL 1108
            C +CGL+
Sbjct: 1197 CDICGLM 1203


>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
 gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
            WM276]
          Length = 1193

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1241 (33%), Positives = 638/1241 (51%), Gaps = 174/1241 (14%)

Query: 7    EGSPKDEQLPDKQKLA--APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV 64
            + +PK+++  +K  +    P+ S  D + ++  F + +GLV+Q L+SFN F+   +++IV
Sbjct: 29   QTAPKNDEDEEKYDVDDDEPI-SQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIV 87

Query: 65   RANDRI----------VSGIDPSIF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMT 112
              + R+          V+G +   + + F  + + + + T +DG +  L P   RL ++T
Sbjct: 88   DDHSRLTLDQFTQYTGVAGDETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLT 147

Query: 113  YAAPILVNIEY------------------VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
            Y+AP+ V+I+                     G   E  + E+    IG++P+M+RS  C+
Sbjct: 148  YSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGEVESAEEEKTSIGKVPVMVRSNFCL 207

Query: 155  LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII---DTDKKGNINASV 211
            L+G  + +   +GECP D GGYFII G+EKVL+ QE+++ N V +       +    A +
Sbjct: 208  LHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEI 267

Query: 212  TSSTET---VKSKTVIQMEK-------GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             S  E    V + T ++M         G + + L      IP++VV +A+G+  D++V+ 
Sbjct: 268  NSQKEKGGRVANHTEVRMYARASGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLS 327

Query: 262  MV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSI 318
             V     D     +L PSIEE  +  +  ++ AL+++  + +     +P   R+  AF I
Sbjct: 328  HVCFGAEDEALLEMLQPSIEE--SFAVQDRDTALDFIGRRGQHEK--APRAQRQRAAFDI 383

Query: 319  LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            L   FL +V         K +++  M    VE               NK   L+  +   
Sbjct: 384  LHKEFLPHVSTAEGFESKKAYFLGYMC---VEQ--------------NKEFALNMAIRPN 426

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFK 438
               D  K  ++                       +  RD+   G+ + L+   F      
Sbjct: 427  TVTDGLKYALA--------------------TGNWGKRDNTRAGVSQVLNRYTF------ 460

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
                             TL H+ R +    +  K + PR L  + WGM+CP +TPEG AC
Sbjct: 461  ---------------ASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSAC 505

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
            GLVKNLALM++++      P++      G+EDL     E    P +  V  NG+ +G HR
Sbjct: 506  GLVKNLALMSYISVGSYSAPVMEFLEEWGLEDL----SEYQDAPTATKVFVNGVWMGIHR 561

Query: 559  RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS--RIKE 616
                  + + ++RR G++   VS+  + ++R + + +D GRVCRPL I D+     R+K 
Sbjct: 562  DAPTLHNNLLQMRRGGQLKYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKR 621

Query: 617  HHMKE--------LLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD----------- 657
             H+          LL G  ++D  L EG++EY+D  EE   LIA+   D           
Sbjct: 622  DHIDRIDQLADEGLLSG--AWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKH 679

Query: 658  ------------------------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
                                     +   TH+EI P  ILGV A +IP+P HNQSPRNTY
Sbjct: 680  ELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNTY 739

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            Q AMGKQAMG    N   RMD+++ +L YPQ+PL TTR++E + + +L AGQNA VA+M 
Sbjct: 740  QSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMC 799

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            YSGY+ ED+++MN+SS+DRG  R +  + YT   +      ++ I +PDR     E +++
Sbjct: 800  YSGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRN----ETLRM 855

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTY 873
             H ++     LD DGL APG  +  +D+ I K +PL      +    Q  ++ R      
Sbjct: 856  KHGTSDRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTK-RDISTPL 914

Query: 874  KGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDF 933
            K    E  VVD+V L ++  G++ +K  +R TR P++GDKF+SRHGQKG  G   +QED 
Sbjct: 915  KST--EQGVVDQVMLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDM 972

Query: 934  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVES 993
            PF+  G+ PD+I+NPH  PSRMT+G ++E L  K     G     + F E      TVE+
Sbjct: 973  PFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTEL-----TVEA 1027

Query: 994  ISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVML 1053
            +S+ L   G+   G +++Y G TG  LQA ++ GP YYQ+LKHMV DK+HAR  GP  +L
Sbjct: 1028 VSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQIL 1087

Query: 1054 TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNH 1113
            TRQP EGR+R+GGLR GEMERDC+I++G +  + ER+  SSD F + VC +CGL+   N 
Sbjct: 1088 TRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDICGLMAVANL 1147

Query: 1114 KLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            K +   CS C+N   IS + +PYA KLL QELQ+MNI  R+
Sbjct: 1148 KKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQAMNIACRM 1188


>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
 gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
          Length = 1184

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1206 (35%), Positives = 645/1206 (53%), Gaps = 111/1206 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSI- 78
            D + L+  + + RGLV Q L+SFN F+   +++IV  +  IV            ID SI 
Sbjct: 14   DSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDEQIDTSIQ 73

Query: 79   -FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------YVQGSHTE 130
              L+F  + + +PS+   +GV+  L P   RL  +TYA+P+ V+ E      +  G+ T 
Sbjct: 74   YVLKFGQLSLSRPSVEEREGVARGLWPSEARLRSLTYASPVFVDAEQKIYRMHEDGTQTL 133

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
                  + + + +IPIMLRS  C  +   E EL   GEC  D GGYFII G EKVL+ QE
Sbjct: 134  LHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIINGMEKVLIGQE 193

Query: 191  QLSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQME-----KGKMYLLLNQFVKKI 242
            +++ N V +   K   K    A V S+ E +++ +   ++     +G++   L      I
Sbjct: 194  RMANNFVYLFQKKQPSKYTWIAEVRSNREGMQATSGFSVKLRGGSQGQVVATLPYIRTDI 253

Query: 243  PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
            PI ++ +A+G+ SD++++        D +  A+L PS+EE    +  +QE  L+++ GK 
Sbjct: 254  PIAILFRALGVLSDKDILLRCVYDFSDSQMLAILRPSLEE--TFEFSSQEVCLDFI-GK- 309

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
            +  T G+    R   A  +L    L +V V       K +++  M+ R+    L +   D
Sbjct: 310  RGPTVGAIREKRIQYARELLEREVLPHVGVTIGCEFRKAYFIGYMVHRLCMGALGRVPED 369

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS- 418
            D+D+ G KRL+L+G LV+  F   F+ M+ ++++   ++         FD++  I   S 
Sbjct: 370  DRDHFGKKRLDLAGPLVAASFGQSFRKMMKDMRR---LLQRNIDNGKEFDVAGVIRSASY 426

Query: 419  ITVGLERTLSTGNFDVKR-FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT  L+   +TGN+   R  K+ R G+ QVL+RL+F   L ++ R++    +   ++ PR
Sbjct: 427  ITQTLQYQFATGNWGKDRDGKIVRTGVAQVLSRLTFASALSYLRRLNTPLGREGTLAKPR 486

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG A GLVKNLALM  ++       + +     G++ ++ +  E
Sbjct: 487  QLHNTHWGMICPAETPEGHAVGLVKNLALMCEISVGYRPFAIRTFLDEWGMDSIDEVPPE 546

Query: 538  ELHNPNSFLVIFNGLILGKHRRPKCFADV------MRKLRRAGKIGEFVSVFVNEKQRCV 591
            ++ +     V  NG  +G      CF D       +R +RR+G+I    S+ ++   R V
Sbjct: 547  DIKD--KIKVFLNGNWVG------CFDDSEDSITNLRMIRRSGEIPYETSIVLDVVNREV 598

Query: 592  YIASDGGRVCRPL-VIADKGISRIKEHHMKELL--------------------------- 623
             + +D GR  RPL ++ + G  +I++ H+  LL                           
Sbjct: 599  KLFTDAGRSMRPLYIVGEDGELKIRKSHIATLLGIKMPENNSNEDMKILSEVDLPEGGIS 658

Query: 624  -DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA------TPDTTHIEIEPFTILGVI 676
             D   ++DD ++ G+IEY+D  EE  A+IA++  D           TH EI P  ILG+ 
Sbjct: 659  RDSDFTWDDLIKSGIIEYIDCEEEETAMIAMFMNDLRDARGYCSTYTHCEIHPSLILGIC 718

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IP+P HNQSPRN YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +  +
Sbjct: 719  ASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTRAMTYM 778

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             + +L AG N  V +M YSGY+ ED+++MN+SS+DRG  R +  + Y +  ++  ++  +
Sbjct: 779  RFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQIGSNLIE 838

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
                P+       R    ++ NL     D DGL  PG  +  +D+ I K  P+       
Sbjct: 839  AFELPNPDEVSGLRFG--NYGNL-----DRDGLIEPGNRVLGDDIIIGKFGPI------- 884

Query: 857  SPTGQTDSRYR--SARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
             P  + D+R    + R    G    E  VVD V L ++  G    K  +R  R P +GDK
Sbjct: 885  -PPEERDNRIERLTKRDCSIGLRSSEHGVVDEVLLSTNSKGVKFTKVKVRTIRVPHIGDK 943

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKG  G   + ED PF++ GI PD+IMNPH  PSRMT+G +IE + GK     G
Sbjct: 944  FASRHGQKGTIGITYRMEDMPFTQDGIVPDIIMNPHAIPSRMTIGHLIECILGKTCAIEG 1003

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                 + F +      TVE IS  L   GF  NG +++Y+G TG  L++ IF+GP YYQ+
Sbjct: 1004 MEGDATPFTKV-----TVEEISNRLHAAGFQRNGNEVMYNGHTGRQLESRIFIGPTYYQR 1058

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKHMV DK+HAR  G   MLTRQP EGR+R GGLR GEMERDC+I++GA+ ++ ERL   
Sbjct: 1059 LKHMVDDKIHARAKGAITMLTRQPREGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQ 1118

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
             D + V VC +CGL+   +   +   C  C N   IS + LPYACKLL+QEL +M+I PR
Sbjct: 1119 CDAYRVHVCELCGLICTADLGKQHYECKVCSNKSQISQVCLPYACKLLLQELMAMSIYPR 1178

Query: 1154 LKLAEA 1159
            L+L  A
Sbjct: 1179 LQLQTA 1184


>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
 gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
          Length = 1282

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1250 (34%), Positives = 653/1250 (52%), Gaps = 148/1250 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV---------RANDRIVSGIDPSIF- 79
            D ++++  +  ++GLV Q +DSF+ F  T I+ +V           N    SG D ++  
Sbjct: 46   DCWEVISSYFDMKGLVSQQIDSFDEFTTTTIQSLVDEYADLTLDHPNPGDDSGRDIAMRR 105

Query: 80   --LRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAP----------ILVNIE---- 122
              + F +V I +P++T        L P+ CR  ++TY+AP          + VN E    
Sbjct: 106  YDIHFGNVMISKPTLTETTGETTVLLPYECRDRNLTYSAPMYCRVSKRARVAVNEEVRLE 165

Query: 123  ---------YVQGSHTEKTT-MEKND------------------VVIGRIPIMLRSCRCV 154
                       Q     KT   E+ D                  + +G++P+M++S  C 
Sbjct: 166  DMDDDQRAYMAQTGEVPKTIRWEEEDTGPREGIAKGDDDEQGDLIFLGKLPVMVKSQVCH 225

Query: 155  LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINASV 211
            L+G+D+  L +L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A +
Sbjct: 226  LHGEDDESLFQLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEI 285

Query: 212  TSSTE---------TVKSKTVIQMEKGK----MYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             S+ E          +K  T    +KG+    + + L    + + + +V +A+G+ SD++
Sbjct: 286  RSALEKGSRLISSLQMKLHTKASPDKGRQANTVSVTLPYVREDVSLAIVFRALGIVSDED 345

Query: 259  VVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            ++  +  D   + +L    P IEE     I  +E AL+++ GK      G   ++R   A
Sbjct: 346  ILNHICYDRSDTQMLEALRPCIEEA--FCIQDREIALDFI-GKRGNGNAGQNRSNRIRAA 402

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              +L+   L ++         K F++  M+ ++++  L +   DD+D+ G KRL+L+G L
Sbjct: 403  KDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPL 462

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  + + M  ++   +   +     +  F L+  I   ++T GL+ +L+TGN+ D 
Sbjct: 463  LAKLFRGIIRRMTQDLMSYMKRCIDT---NKNFSLALGIKHSTLTNGLKYSLATGNWGDQ 519

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 520  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 579

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNL+LM +V+      P++       +E LE    E L  PN+  V  NG  +
Sbjct: 580  GQACGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLEEY--EPLRYPNATKVFVNGTWV 637

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA---DKGI 611
            G H+ PK    +++ LRR   I   VS+  + + R   I SD GRV RPL      D G 
Sbjct: 638  GVHQDPKHLVSLVQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDNGA 697

Query: 612  SRI--------KEHHMKELLD--------GVRSFDDFLREGLIEYLDVNEENNALIALYE 655
            + +        KEH  +   D            +   LR G IEYLD  EE  A+I +  
Sbjct: 698  NGVEKGQLILNKEHIQRLEADKELGKYHPDYWGWKGLLRSGAIEYLDAEEEETAMICMSP 757

Query: 656  GD---------------------------ATPDT---THIEIEPFTILGVIAGLIPYPHH 685
             D                             P T   TH EI P  +LG+ A +IP+P H
Sbjct: 758  EDLDMFRLSKMGFNVTDTSGQGNSRIRTKINPTTHMYTHCEIHPSMLLGICASIIPFPDH 817

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQ
Sbjct: 818  NQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQ 877

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P+R+ 
Sbjct: 878  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIIEKFEKPNRS- 936

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
               + +++ H +      LD DG+ APG  +   D+ I K  P+    + +   GQ  ++
Sbjct: 937  ---DTLRLKHST---YDKLDMDGIVAPGVRVSGEDIIIGKTCPINPENAEL---GQRSTQ 987

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            +     +      E+ +VD V L ++++G   +K  +R T+ P++GDKF+SRHGQKG  G
Sbjct: 988  HVKRDASTPLRSTESGIVDSVILTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIG 1047

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     + F E  
Sbjct: 1048 VTFRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTEV- 1106

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                TV+S+S  L +HG+   G +++Y G TG  L+A +F GP YYQ+L+HMV DK+HAR
Sbjct: 1107 ----TVDSVSALLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHAR 1162

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V +C +C
Sbjct: 1163 ARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEIC 1222

Query: 1106 GLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+    +  K    C  CKN   I+ + +PYA KLL QEL SMNI  R+
Sbjct: 1223 GLMTPIANLTKQSFECRPCKNKTKIAQVHIPYAAKLLFQELMSMNIASRM 1272


>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
          Length = 1261

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1259 (33%), Positives = 652/1259 (51%), Gaps = 165/1259 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q  DSF+ F  T I+ +V     I           GI  ++  
Sbjct: 24   DCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGIKIALRR 83

Query: 80   --LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
              ++F  V + +P+++  DG    L P+ CR  ++TYA+P+ +NI               
Sbjct: 84   YEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAIEREVPLH 143

Query: 122  --------EYVQ-GSHTEKTTME----------------KNDVVIGRIPIMLRSCRCVLY 156
                    EY + G +  K   E                KN V +G++PIM++S  C L 
Sbjct: 144  EMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAGKSEDWKNMVFVGKLPIMVKSKICHLS 203

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-----INASV 211
             + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK         A +
Sbjct: 204  RETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPFTYTAEI 261

Query: 212  TSSTETVKSKTVIQMEKGKMYLLLNQ--------------FVKK-IPIMVVMKAMGMESD 256
             S+ E  K   +I   + K+Y   +               FVK  +PI +V +A+G+ SD
Sbjct: 262  RSALE--KGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSD 319

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D + S +L    P IEE     +  +E AL+++  +  R   G     R  
Sbjct: 320  EDILNHICYDRKDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGREKRVR 377

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF- 432
             L++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+TGN+ 
Sbjct: 438  PLLAKLFRGIVRRMNNELSNYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLATGNWG 494

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
            D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +T
Sbjct: 495  DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG 
Sbjct: 555  PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE--EYEPLRYPHATKIFVNGT 612

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA---DK 609
             +G H+ PK     +   RR   +   VS+    + +   I SD GRV RP+      D 
Sbjct: 613  WVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDD 672

Query: 610  GISRIKEHHM---KELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIA 652
              + I++ H+   KEL++ +                ++  +R G +EYLD  EE  ++I 
Sbjct: 673  PETGIEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMIC 732

Query: 653  LYEGD----------------------------ATPDT---THIEIEPFTILGVIAGLIP 681
            +   D                              P T   TH EI P  ILG+ A +IP
Sbjct: 733  MTPEDLELYRLQKAGVALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLL-----ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
                         H S L +       LD+DG+ APG  +   D+ I K +P++     +
Sbjct: 913  ------------FHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDL 960

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              T  T  + R      +    E  ++D V L  + +    +K  +R T+ P++GDKF+S
Sbjct: 961  G-TRTTVHQRRDISTPLRST--ENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGDKFAS 1017

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K     G   
Sbjct: 1018 RHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEG 1077

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+H
Sbjct: 1078 DATPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRH 1132

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD 
Sbjct: 1133 MVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDA 1192

Query: 1097 FEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            F V VC +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1193 FRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1251


>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1208

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1204 (33%), Positives = 638/1204 (52%), Gaps = 150/1204 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             +P I 
Sbjct: 26   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNPDEEDNPIIK 85

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY----------- 123
                ++F  V + +P+ T  DG + +L PH  RL ++TY+  +L +IE            
Sbjct: 86   RRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRVMVAREGRDP 145

Query: 124  -------VQGSHT--------EKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAEL 163
                   ++G +T        E+  M  +D     V IG++P+MLRS  C L  + +A+L
Sbjct: 146  DADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELCHLRAQSDADL 205

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTET 217
              L ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G       I ++V   T  
Sbjct: 206  FALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRL 265

Query: 218  VKSKTVIQMEK-----GK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV--- 263
            + S  +   E      GK       Y  L      +P+ +V +A+G+ SD+E++  +   
Sbjct: 266  ISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVFD 325

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
              D +   LL PSIEE +   +  +E AL+++    KR       + R   A  I++  F
Sbjct: 326  RNDTQTLELLKPSIEEGSV--VQDRETALDFI---AKRGANSGTRDRRLKFARDIMQREF 380

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  L
Sbjct: 381  LPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRIL 440

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRK 442
            F  +  +V K +   +     +  F++   +   +IT GL+ +L+TGN+ D K+    + 
Sbjct: 441  FLKLTKDVYKYLQRCVEN---NQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAASAKA 497

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            NL+LM +V+   +  P++       ++ LE    ++  +P++  V  NG+ +G H   + 
Sbjct: 558  NLSLMCYVSVGSDATPIVDFMTQRNMQLLE--EYDQNQSPDATKVFVNGVWVGVHSNAQQ 615

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM--- 619
               V+++LRR G +   +S+  + + R   I +D GRV RPL + +  + +   +H+   
Sbjct: 616  LVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDVRKPNRNHLIFT 675

Query: 620  KELLDGVRS----------------------FDDFLREGLIEYLDVNEENNALIALYEGD 657
            KE+ + ++S                      +   +++G++EYLD  EE  A+I     D
Sbjct: 676  KEISNKLKSEQMEANQRQGWSEEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPED 735

Query: 658  ----------------------------ATPDT-----THIEIEPFTILGVIAGLIPYPH 684
                                          PD      TH EI P  ILG+ A +IP+P 
Sbjct: 736  LEEWREMKMGLPMTDHSLEGSQRLRRLKPLPDPRIHSYTHCEIHPAMILGICASIIPFPD 795

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L AG
Sbjct: 796  HNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAG 855

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA+ +Y GY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R 
Sbjct: 856  QNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA 915

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 R++   +       LDDDG+ APG  +  +D+ I K +P+ T  + +   GQ  +
Sbjct: 916  --DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIATDAAEL---GQKTT 965

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
             +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  
Sbjct: 966  LHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTI 1025

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PFS  G+ PDLI+NPH  PSRMT+  ++E L  K G   G+    + F + 
Sbjct: 1026 GITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDV 1085

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TV+ +S+ L   G+   G +++Y+G TG  ++  IF+GP YYQ+L+HMV DK+HA
Sbjct: 1086 -----TVDQVSQLLENAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHA 1140

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC +
Sbjct: 1141 RARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDI 1200

Query: 1105 CGLL 1108
            CGL+
Sbjct: 1201 CGLM 1204


>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
          Length = 1261

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1259 (34%), Positives = 650/1259 (51%), Gaps = 165/1259 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV Q  DSF+ F  T I+ +V     I        S     I LR 
Sbjct: 24   DCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGMKIALRR 83

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  V + +P+++  DG    L P+ CR  ++TYA+P+ +NI               
Sbjct: 84   YEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAIEREVPLH 143

Query: 122  --------EYVQ-GSHTEKTTME----------------KNDVVIGRIPIMLRSCRCVLY 156
                    EY + G +  K   E                KN V +G++PIM++S  C L 
Sbjct: 144  EMDDAQQAEYAKTGENPTKLIWEQEESPEDDEAGKSEDWKNMVFVGKLPIMVKSKICHLS 203

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-----INASV 211
             + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK         A +
Sbjct: 204  RETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPFTYTAEI 261

Query: 212  TSSTETVKSKTVIQMEKGKMYLLLNQ--------------FVKK-IPIMVVMKAMGMESD 256
             S+ E  K   +I   + K+Y   +               FVK  +PI +V +A+G+ SD
Sbjct: 262  RSALE--KGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSD 319

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D + S +L    P IEE     +  +E AL+++  +  R   G     R  
Sbjct: 320  EDILNHICYDRKDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGREKRVR 377

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF- 432
             L++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+TGN+ 
Sbjct: 438  PLLAKLFRGIVRRMNNELSNYLRRCVEG---NRHFNLAVGIKPATLSNGLKYSLATGNWG 494

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
            D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +T
Sbjct: 495  DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG 
Sbjct: 555  PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE--EYEPLRYPHATKIFVNGT 612

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA---DK 609
             +G H+ PK     +   RR   +   VS+    + +   I SD GRV RP+      D 
Sbjct: 613  WVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDD 672

Query: 610  GISRIKEHHM---KELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIA 652
              + I++ H+   KEL++ +                ++  +R G +EYLD  EE  ++I 
Sbjct: 673  PETGIEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMIC 732

Query: 653  LYEGD----------------------------ATPDT---THIEIEPFTILGVIAGLIP 681
            +   D                              P T   TH EI P  ILG+ A +IP
Sbjct: 733  MTPEDLELYRLQKAGVALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLL-----ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
                         H S L +       LD+DG+ APG  +   D+ I K +P++     +
Sbjct: 913  ------------FHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDL 960

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
              T  T  + R      +    E  ++D V L  + +    +K  +R T+ P++GDKF+S
Sbjct: 961  G-TRTTVHQRRDISTPLRST--ENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGDKFAS 1017

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K     G   
Sbjct: 1018 RHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEG 1077

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+H
Sbjct: 1078 DATPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRH 1132

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD 
Sbjct: 1133 MVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDA 1192

Query: 1097 FEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            F V VC +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1193 FRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1251


>gi|315426560|dbj|BAJ48190.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
            subterraneum]
 gi|343485294|dbj|BAJ50948.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
            subterraneum]
          Length = 1117

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1133 (35%), Positives = 623/1133 (54%), Gaps = 49/1133 (4%)

Query: 39   LKVRGLVKQHLDSFNYFVNTGIRKIVRA-NDRIVSGIDPSIFLRFKDVRIGQPSM-TVDG 96
            L+  GLV+ HL SFNYFV TG++++V + +D  +     ++ ++F  V I  P+   +D 
Sbjct: 18   LEDEGLVQHHLRSFNYFVKTGLQQLVNSMSDYEIKTKHGTVVVKFGQVTIDIPTKREIDA 77

Query: 97   VS-EKLNPHMCRLSDMTYAAPILVNIE-YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCV 154
             + + L P   RL ++TY API + +  Y  G    K      +V +G IP+M++S  C 
Sbjct: 78   PNPQPLYPWEARLRNLTYEAPIYIKMSIYFDG----KPIAPPENVWVGNIPVMVKSDICP 133

Query: 155  LYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII---DTDKKGNINASV 211
            L      EL   GE P DPGGYFII G+E+V++  E L+ NR+I+   + D K   +A +
Sbjct: 134  LSKMTHDELLAHGEDPQDPGGYFIINGSERVIVGIEDLAPNRIIVTKKEGDSKPQYSAVI 193

Query: 212  TSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS 270
             S+    + +  +   K   + +  ++  K +P +++++A+G+  DQE+  ++       
Sbjct: 194  LSAAHGRQVRVEVSYRKDSPVKVYFSRIYKGVPAIIMLRALGLTKDQEIANLISPLKEVQ 253

Query: 271  ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVH 330
             LL PS  E   ++  T E+AL+Y+  ++    FG     R  +A  I+  +F+ ++   
Sbjct: 254  ELLEPSFREAEGVE--TVEQALDYIGSRI---AFGYAEEYRLEKAEQIVDTMFMLHLGTT 308

Query: 331  NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISE 390
                  K  ++  M+ R++E  L     DD+D+  NKRL+L   L++ L+   F  ++ +
Sbjct: 309  KAARMKKAVHLCEMIGRVLETSLGLREPDDRDHYANKRLKLESALLTELYRMAFVKLLRD 368

Query: 391  VQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLAR 450
            ++  ++ I+  P+R     +S ++    ++  ++  ++TGN+   R      G+TQ+L R
Sbjct: 369  LRYQLERII--PTRQP-ISISTYVRHGIVSEFVKHAMATGNWPGGRV-----GVTQLLNR 420

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             +++ TL H+ RV     + +     R L  + WG LCPC+TPEG   GLVKNLAL   V
Sbjct: 421  TNYLATLSHLRRVQSPLSRGQPHFEARDLHGTHWGRLCPCETPEGSNAGLVKNLALSAEV 480

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            +    +  L+   + L V  L  +  +    PN   V  +G++ G H       + +R+L
Sbjct: 481  SFQANKKELLDRLFQLNVIPLNEIIAKRRPPPN-VKVFVDGVLEGYHSNGVMLVNELRRL 539

Query: 571  RRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS 628
            RR G I + ++V  +     + V I +D GR+ RPL++   G   ++  H++ +      
Sbjct: 540  RREGIISQNINVALYTYGHVQEVVINTDEGRIRRPLIVVQNGQPLLQRQHVELIKRKTSK 599

Query: 629  FDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
            F D +  G+IEYLD  EE NA +A+     T + TH+EI  F +LGV A LIPY  HNQS
Sbjct: 600  FRDLVSLGIIEYLDAEEEENAYVAISPDKVTNEHTHLEISSFAMLGVTASLIPYAEHNQS 659

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
            PRN Y+ AM KQA+G  A N   R DS  +LLVYPQRP++TTRT +L+G DK   GQN  
Sbjct: 660  PRNVYEAAMAKQALGVFASNYALRTDSRSHLLVYPQRPIVTTRTADLIGIDKRPLGQNMV 719

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA 808
            VA+++  GY++EDA+V+N+SS++RG G  +  + Y    ++      D+   P+ +  G 
Sbjct: 720  VAILTGKGYNMEDAVVLNRSSVERGLGLSLSWRIYEVEARQTPGGQRDKFGIPEPSVRGY 779

Query: 809  ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSR 865
               Q          +LD DG A     +    V +   SP   LE    +  PT   +  
Sbjct: 780  RGEQFYR-------VLDKDGFAHIESDVSGGTVIVGMMSPPRFLEEYQRV--PT--REMV 828

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            +R + +T +    ET  V+ + +  +  G+L +K  +R T   E+GDKFSSRHGQKGV G
Sbjct: 829  WRDSSETVQ--PSETGNVENIFITINAEGNLLVKAKVRSTCFTEIGDKFSSRHGQKGVVG 886

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
             ++ QED P+++ GI PDL++NPH FPSRMT+G++IE L GK G        G+ F    
Sbjct: 887  MLIPQEDMPYTKDGIVPDLLINPHAFPSRMTIGQLIESLAGKLGSIKAEIVDGTPF---- 942

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                ++E +   L   GF  +G++++Y+G TG  L+A +F+G +YYQ+L H+V DK+HAR
Sbjct: 943  -LGKSLEELRAELEALGFKSSGRELLYNGATGKILEAEVFIGVVYYQRLHHLVRDKIHAR 1001

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              G   MLTRQPTEGR+R GGL+ GEMERDCLIAYGAS L+ +RL+  SD +    C  C
Sbjct: 1002 ARGQVQMLTRQPTEGRSRGGGLKFGEMERDCLIAYGASYLLLDRLLEQSDKYTAYFCEKC 1061

Query: 1106 GLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            G+  YY+ K +  +C        + ++ + YA  LL+ E+ SM I PR+ L E
Sbjct: 1062 GMPCYYDLKQERFVCPVDGKDVRVKAVSMSYAFYLLLNEMMSMCIHPRILLEE 1114


>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
 gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
          Length = 1206

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1226 (34%), Positives = 630/1226 (51%), Gaps = 139/1226 (11%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR-------------ANDRIVSGIDPSI 78
            + +L  F   +GLV Q ++SFN F+   ++ I+               ND ++S I   +
Sbjct: 12   WHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDNDPGNDDLLSKI--RM 69

Query: 79   FLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV-----------NIEYVQG 126
             +R   + + +P+ +  DG+   L P+  RL ++TY++P+             +I+Y+  
Sbjct: 70   VIRLGQLHLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTSIIKNEKSIDYILK 129

Query: 127  SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
              +EK       ++IGRIPIM++S  C+L   D   L  LGECP DPGGYFI+ G+EKV+
Sbjct: 130  QFSEK-------ILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVNGSEKVI 182

Query: 187  LIQEQLSKNRVIIDTDKKGNINASVTSSTETVKS-------KTVIQMEK----------- 228
            + QEQLS N+V I   K  N+  ++     TV+        ++V    K           
Sbjct: 183  VAQEQLSWNKVYI-FQKNENLRNTIKIKNYTVEGYLYFAECRSVADYSKWSPSLLTVKVC 241

Query: 229  --------------------------GKMYL--LLNQFVKKIPIMVVMKAMGMESDQEVV 260
                                      G  YL  +L  F K IPI  + KA+G E++ E++
Sbjct: 242  LCPYKDQKFSIFKKNLKFNSPEIFLSGGFYLRMMLPYFKKDIPITWIFKALGFENEIEIL 301

Query: 261  QMVGRDPRYSALL--LPSIEE-------------CANLDIYTQEKALEYLEGKVKRSTFG 305
              +  D +   L+  +  I E             C  LD   QE AL  +   V +    
Sbjct: 302  DYICYDSQDEDLISIVRYIVEDDKISTQNSLSISCPILD---QETALAAIGQHVSKG--- 355

Query: 306  SPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
             P   R   A+ +L+  FL ++ +       K ++   ++ +++   + K  MDD+D+ G
Sbjct: 356  -PQGIRIKFAYEVLQKEFLPHIGIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYG 414

Query: 366  NKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLER 425
             KRL+  G L+S LF  L   ++ E +  V   + +  +  +F+L  F   + +T G++ 
Sbjct: 415  YKRLDTVGPLLSQLFRQLLGKVLKEFKTNVQKKIHRLDK--KFELKDFFKSNYVTTGIQY 472

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
             LSTGN+   +  + R G++QVL RLS+  TL H+ RV+    K  K++ PR L  S WG
Sbjct: 473  ALSTGNWGTDKQSL-RTGISQVLNRLSYSSTLSHLRRVNSPSAKGNKITKPRHLHNSHWG 531

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
             +CP +TPEG +CGLVKNLAL   +T       +I     LG+E LE  + ++L +  SF
Sbjct: 532  YICPVETPEGHSCGLVKNLALTAMITIGTSPLFIIEKLENLGLESLEEYNSDKLKS--SF 589

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             V  NG  +G H+ P      M+  RR     E +S+ +++  + + I SD GRV RPL+
Sbjct: 590  KVFVNGCWIGTHKNPFALISKMKIYRRRNIFSEEISIILDDYDKEIKIFSDSGRVIRPLL 649

Query: 606  IADKGISRIK---EHHMKELLDGVRSFDDF---LREGLIEYLDVNEENNALIALYEG--- 656
            I ++         + ++  L D    + +F   L EG++EY+D  EE   LI+++     
Sbjct: 650  IINEENIIKINNKQKYLHNLTDDQSIYSNFQQLLEEGILEYVDPEEEETCLISMFYNFKY 709

Query: 657  -----DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                       TH E+ P  ILGV A LIP+  HNQSPRNTYQ AMGKQA+G    N   
Sbjct: 710  LKNLHTQKIKYTHCELHPSVILGVCASLIPFCDHNQSPRNTYQAAMGKQAIGINVSNYDF 769

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD++ ++L YPQ+PL+ T+++  + +     G NA VA+  Y GY+ ED+I+M++ S+D
Sbjct: 770  RMDTMCHILYYPQKPLVCTKSMNFIKFKDFPNGINAIVAIACYGGYNQEDSIIMSQDSID 829

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R    + Y  + +       +    P+       ++            LD DGL  
Sbjct: 830  RGLFRSFFFRNYKDVEKIKFGGKKETFEIPNWKSCNGIKIHSYEK-------LDLDGLIG 882

Query: 832  PGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
             G+ +  ND+ I K  P    +     +   G+          + K  + ET VVD+V L
Sbjct: 883  EGKKVNSNDIIIGKTCPTNLFDNNNEDLRLLGKNLKIKTDCSSSIK--NFETGVVDKVIL 940

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
                 G   +K  IR  R P++GDKF+SRHGQKG+ G I +Q + PFSE+GI PD+IMNP
Sbjct: 941  AKSDEGFRLVKIRIRSVRLPQIGDKFASRHGQKGIIGMIYRQVNMPFSEQGISPDIIMNP 1000

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMT+G ++E L  KA    G    G+ F         +E I   L K+ F  NG 
Sbjct: 1001 HAIPSRMTIGHLLECLLSKAVSMKGIEGDGTPF-----ERQNMEDIMNFLEKNNFDKNGW 1055

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y+G  G  +++ IFMGP YYQKLKHMV DK+H+R  GP  +LTRQP EGR+R GGLR
Sbjct: 1056 EILYNGFNGKRIKSLIFMGPTYYQKLKHMVEDKIHSRARGPIQILTRQPVEGRSREGGLR 1115

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDN 1128
             GEMERDC+I++GA++ + +RL   SDPF + VC  CG +   N K     C  C N   
Sbjct: 1116 FGEMERDCMISHGAAIFLKDRLFDQSDPFGIYVCDFCGFIVVSNKKQNNFECRNCSNRSM 1175

Query: 1129 ISSMKLPYACKLLIQELQSMNIVPRL 1154
            IS +++PYA KLLIQEL S+++  RL
Sbjct: 1176 ISFIRIPYAFKLLIQELMSLSVGVRL 1201


>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
            C5]
          Length = 1208

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1204 (33%), Positives = 635/1204 (52%), Gaps = 150/1204 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             +P I 
Sbjct: 26   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPIIK 85

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY----------- 123
                ++F  V + +P+ T  DG + +L PH  RL ++TY+  +L +IE            
Sbjct: 86   RRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRDP 145

Query: 124  -------VQGSHT--------EKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAEL 163
                   ++G +T        E+  M  +D     V IG++P+MLRS  C L  + +A+L
Sbjct: 146  EGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDADL 205

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTET 217
              L ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G       I ++V   T  
Sbjct: 206  FALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRL 265

Query: 218  VKSKTVIQMEK-----GK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV--- 263
            + S  +   E      GK       Y  L      +P+ +V +A+G+ SD+E++  +   
Sbjct: 266  ISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYD 325

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
              D +   LL PSIEE +   +  +E AL+++    KR       + R   A  I++  F
Sbjct: 326  RTDTQMLELLKPSIEEGSV--VQDRETALDFI---AKRGANSGTKDRRLKFARDIMQREF 380

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  L
Sbjct: 381  LPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRIL 440

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRK 442
            F  +  +V K +   +     +  F++   +    IT GL+ +L+TGN+ D K+    + 
Sbjct: 441  FLKLTKDVYKYLQRCVEN---NQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            NL+LM +V+   +  P+I       ++ LE    ++  NP++  V  NG+ +G H   + 
Sbjct: 558  NLSLMCYVSVGSDASPIIDFMTQRNMQLLE--EYDQNQNPDATKVFVNGVWVGVHSNAQQ 615

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM--- 619
               V+++LRR G +   +S+  + + R   I +D GRV RPL + +  I +   +H+   
Sbjct: 616  LVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFT 675

Query: 620  KELLDGVRS----------------------FDDFLREGLIEYLDVNEENNALIALYEGD 657
            KE+ + +++                      +   +++G++EYLD  EE  A+I     D
Sbjct: 676  KEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPED 735

Query: 658  ----------------------------ATPDT-----THIEIEPFTILGVIAGLIPYPH 684
                                          PD      TH EI P  ILG+ A +IP+P 
Sbjct: 736  LEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIPFPD 795

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L AG
Sbjct: 796  HNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAG 855

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA+ +Y GY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R 
Sbjct: 856  QNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA 915

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ  +
Sbjct: 916  --DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQKTT 965

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
             +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  
Sbjct: 966  LHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTI 1025

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PF+  G+ PDLI+NPH  PSRMT+  ++E L  K G   G+    + F + 
Sbjct: 1026 GITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDV 1085

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TV+ IS+ L   G+   G +++Y+G TG  L+  IF+GP YYQ+L+HMV DK+HA
Sbjct: 1086 -----TVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHA 1140

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC +
Sbjct: 1141 RARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDI 1200

Query: 1105 CGLL 1108
            CGL+
Sbjct: 1201 CGLM 1204


>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
          Length = 1270

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1264 (33%), Positives = 647/1264 (51%), Gaps = 164/1264 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GL  Q  DSF+ F  T ++ +V     I           G++ ++  
Sbjct: 22   DCWTVISSFFETKGLASQQTDSFDEFTQTMVQDLVNEYSTITLDQHNPPAPPGVNIALRR 81

Query: 80   --LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
              ++F  V + +PSM+  DG    L P+ CR  ++TYAAP  + I               
Sbjct: 82   YEIKFGSVMVSRPSMSETDGTVTNLLPYECRDRNLTYAAPTYLKITKKVSVAVDKEIPLH 141

Query: 122  --------EYVQ-GSHTEKTTMEKND--------------VVIGRIPIMLRSCRCVLYGK 158
                    EY + G +  K   E  +              + IG++PIM++S  C L   
Sbjct: 142  EMDDEQQAEYKRTGENPTKLVWEVEEDAGSIKAEDEPSEMIFIGKMPIMVKSKICHLSSH 201

Query: 159  DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN---------INA 209
             + +L  L ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           I +
Sbjct: 202  SDEDLFMLNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPYTYTAEIRS 259

Query: 210  SVTSSTETVKSKTVIQMEKG--------KMYLLLNQFVKK-IPIMVVMKAMGMESDQEVV 260
            ++   +  + S T+    KG        +       FVK  +P+ +V +A+G+ SD++++
Sbjct: 260  ALEKGSRLISSLTMKLYGKGDSARGGFGQTIQATLPFVKADLPVAIVFRALGVVSDEDIL 319

Query: 261  QMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317
              +  D   S +L    P IEE     +  +E AL+++  +  R         R   A  
Sbjct: 320  NHICYDRNDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQASLGREKRVRVAKD 377

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
            IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L++
Sbjct: 378  ILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLA 437

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVK 435
             LF  + + + +E+       L +   S+R F+L+  I   +++ GL+ +L+TGN+ D K
Sbjct: 438  KLFRGIIRRINTELSN----YLKRCVESNRNFNLTVAIKPSTLSNGLKYSLATGNWGDQK 493

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 494  KAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 553

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNL+LM +V+      PLI      G+E +E    E    P++  +  NG  +G
Sbjct: 554  QACGLVKNLSLMCYVSVGSPADPLIEFMINRGMEVVE--EYEPTRYPHATKIFVNGSWVG 611

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP------------ 603
             H  PK   + +   RR   +   VS+  + + R   I SD GRV RP            
Sbjct: 612  VHADPKHLVNQVLDTRRKSYVQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVHQEDDYEN 671

Query: 604  ------LVIADKGISRIKEHHMKELLDGVRSF--DDFLREGLIEYLDVNEENNALIALYE 655
                  LV+    ++R+ +   +   +    F  D  +REG +EYLD  EE  A+I +  
Sbjct: 672  NITKGQLVLTKDHVNRLAQEQAEPPANPADKFGWDGLIREGAVEYLDAEEEETAMICMTP 731

Query: 656  GD-----------------------------------------ATPDT---THIEIEPFT 671
             D                                           P T   TH EI P  
Sbjct: 732  EDLELYREQKNDEATLTEEEKRAKQEAEKREQEEDRNKRLKTKVNPTTHMYTHCEIHPSM 791

Query: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
            ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR
Sbjct: 792  ILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTR 851

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
            ++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K  
Sbjct: 852  SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVG 911

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
             + ++   +P +      RM+   +  L     D+DG+ APG  +   D+ I K +P++ 
Sbjct: 912  LNYTEIFEKPFQQT--TLRMKHGTYDKL-----DEDGIVAPGVRVSGEDIIIGKTAPIDQ 964

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
                +    Q+  R   +       +G   +VD+V L  + +    +K  +R T+ P++G
Sbjct: 965  ENQDLGTRTQSHQRRDISTPLRSTENG---IVDQVILTVNADNVKYVKVRVRTTKIPQIG 1021

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKG  G   +QED PFS  G+ PD+I+NPH  PSRMT+  +IE L  K    
Sbjct: 1022 DKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 1081

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G     + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YY
Sbjct: 1082 EGMEGDATPFTDV-----TVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYY 1136

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL 
Sbjct: 1137 QRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLF 1196

Query: 1092 VSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
              SD F V VC +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQ+MNI
Sbjct: 1197 EVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQAMNI 1256

Query: 1151 VPRL 1154
              R+
Sbjct: 1257 AARM 1260


>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
          Length = 1208

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/1204 (33%), Positives = 633/1204 (52%), Gaps = 150/1204 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------SGIDPSIF 79
            D + ++  F   +GLV Q LDS++ F    I+ IV+ N  ++             +P I 
Sbjct: 26   DCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPIIK 85

Query: 80   ----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEY----------- 123
                ++F  V + +P+ T  DG + +L PH  RL ++TY+  +L +IE            
Sbjct: 86   RRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRDP 145

Query: 124  -------VQGSHT--------EKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAEL 163
                   ++G +T        E+  M  +D     V IG++P+MLRS  C L  + +A+L
Sbjct: 146  EGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDADL 205

Query: 164  ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTET 217
              L ECP D GGYF+I G+EKVL+ QE+ + N V +   K+G       I ++V   T  
Sbjct: 206  FALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRL 265

Query: 218  VKSKTVIQMEK-----GK------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV--- 263
            + S  +   E      GK       Y  L      +P+ +V +A+G+ SD+E++  +   
Sbjct: 266  ISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYD 325

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
              D +   LL PSIEE +   +  +E AL+++    KR       + R   A  I++  F
Sbjct: 326  RTDTQMLELLKPSIEEGSV--VQDRETALDFI---AKRGANSGTKDRRLKFARDIMQREF 380

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++         K ++   M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  L
Sbjct: 381  LPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRIL 440

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRK 442
            F  +  +V K +   +     +  F++   +    IT GL+ +L+TGN+ D K       
Sbjct: 441  FLKLTKDVYKYLQRCVEN---NQDFNVQMAVKASIITNGLKYSLATGNWGDQKXAASAXA 497

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++QVL R ++  TL H+ R +    +  K++ PR L  S WG++CP +TPEG+ACGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            NL+LM +V+   +  P+I       ++ LE    ++  NP++  V  NG+ +G H   + 
Sbjct: 558  NLSLMCYVSVGSDASPIIDFMTQRNMQLLE--EYDQNQNPDATKVFVNGVWVGVHSNAQQ 615

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM--- 619
               V+++LRR G +   +S+  + + R   I +D GRV RPL + +  I +   +H+   
Sbjct: 616  LVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFT 675

Query: 620  KELLDGVRS----------------------FDDFLREGLIEYLDVNEENNALIALYEGD 657
            KE+ + +++                      +   +++G++EYLD  EE  A+I     D
Sbjct: 676  KEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPED 735

Query: 658  ----------------------------ATPDT-----THIEIEPFTILGVIAGLIPYPH 684
                                          PD      TH EI P  ILG+ A +IP+P 
Sbjct: 736  LEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIPFPD 795

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RM++++ +L YPQ+PL TTR++E + + +L AG
Sbjct: 796  HNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAG 855

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA+ +Y GY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R 
Sbjct: 856  QNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA 915

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 R++   +       LDDDG+ APG  +  +D+ I K +P+      +   GQ  +
Sbjct: 916  --DTLRLKGGTYDK-----LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQKTT 965

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
             +     +      E  +VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  
Sbjct: 966  LHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTI 1025

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PF+  G+ PDLI+NPH  PSRMT+  ++E L  K G   G+    + F + 
Sbjct: 1026 GITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDV 1085

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TV+ IS+ L   G+   G +++Y+G TG  L+  IF+GP YYQ+L+HMV DK+HA
Sbjct: 1086 -----TVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHA 1140

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRV 1104
            R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V VC +
Sbjct: 1141 RARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDI 1200

Query: 1105 CGLL 1108
            CGL+
Sbjct: 1201 CGLM 1204


>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
 gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1170 (36%), Positives = 640/1170 (54%), Gaps = 71/1170 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKIVRANDRIVSGID----PSI 78
            D ++++  F + +GLV Q +DS+N F+        + +  + R +D+   G++    P  
Sbjct: 38   DIWEVISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFEPGVEMESEPDQ 97

Query: 79   F-LRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTY--AAPILVNIEYVQGSHTEK 131
            + L  +DV +G PS  + G S      L P+ CRL D+TY   A + + I   +    + 
Sbjct: 98   YRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSREDQP 157

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                  ++ +GRIPIML+S RC L  KDE EL RL ECP D GGYFI+ GTEKVL+ QE+
Sbjct: 158  YRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQER 217

Query: 192  LSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEK------GKMYLL--LNQFVK 240
             + N V   T  KG    I + V  S    ++  ++   K      G   LL  + Q  +
Sbjct: 218  QAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDE 277

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEG 297
             IP+ ++ +A+ M SD+E++Q V  D + +A+L     S+E+ + L ++T+++AL ++  
Sbjct: 278  LIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQVFTRDEALWFIGK 337

Query: 298  KVKRSTFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            ++ +    S  N  RE +   ++RD+ L ++ V     R KC ++  M+ R++   L + 
Sbjct: 338  RLGKQD--SRDNLQREAQDL-LMRDL-LPHMGVDCAADRSKCLFIGYMVHRLLLLALGRR 393

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
               D+D++G+KR++++G L++         +  E+ +TV    +  +RS      + +  
Sbjct: 394  EDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFST--NRSGVVSFGRILHS 451

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT G+ R L+TGNF   +    + G++Q L RL++  +L ++ R+      S K + P
Sbjct: 452  RLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISASSKATRP 511

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY--CLGVEDLELL 534
            R L  +QWG +CP +TPEG + GL+KNLALM  V+   +   ++ +      G   + L 
Sbjct: 512  RNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRTTGFHSITL- 570

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
               +L +     V  NG ++G H  P+     +R  RR G++   VSV  + + R + + 
Sbjct: 571  --ADLADVRVARVFVNGTLIGVHADPERLLRELRARRRGGELSNEVSVVRDIRDREIRVF 628

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLD------GVR--SFDDFLREGLIEYLDVNEE 646
            SDGGR  RPL + +K   ++++  + ELL+      G R  S+   +++G +E +D  EE
Sbjct: 629  SDGGRCLRPLFVVEKSRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYVELVDCEEE 688

Query: 647  NNALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            ++ LIA+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG 
Sbjct: 689  DSLLIAMGPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGV 748

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
             A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+
Sbjct: 749  YASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSII 808

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            M++S+++RGF R +  + Y A  +K      +    PDR        +V H        L
Sbjct: 809  MSRSAVERGFFRSVFWRSYKASEEK-KREGQEMFEIPDR--------KVCHVKRADYTKL 859

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D DGL  PG  +   D+ + K  P+    S+   T  T++R      +      E  VVD
Sbjct: 860  DTDGLIKPGMPVIGGDIIVGKTIPIPE--SMREDTTLTNTRILKRDCSISSRTAEKGVVD 917

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            RV L  +K G+   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  GI PDL
Sbjct: 918  RVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDLPFNNDGISPDL 976

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMTV  +IE L GK  V+C  F  G  +  P      VE   + L +   +
Sbjct: 977  IINPHAIPSRMTVAHLIETLAGK--VAC--FKGGEVYATPFCSV-VVEDFGKALTQLNLN 1031

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G + +Y+G TG PL   IF GP YYQ+LKH+  DK+HAR  GP   L RQPTEGRA  
Sbjct: 1032 RYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHE 1091

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC+++YGAS  + ERL   SD + V VC VCG +   +       C  C 
Sbjct: 1092 GGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQNVYKCQGCD 1151

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  +I+ + +PYACKLL QEL SM I+PRL
Sbjct: 1152 NDSHIAQVLMPYACKLLFQELMSMAILPRL 1181


>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
          Length = 1147

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1106 (35%), Positives = 613/1106 (55%), Gaps = 73/1106 (6%)

Query: 82   FKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSH----TEKTTMEK 136
            F  V + +P+ T  DG +  + PH  RL +MTY++P+ V+I            E  +  +
Sbjct: 35   FNQVYVSKPTATERDGTTSNMFPHEARLRNMTYSSPMYVDISVNSACRIRMLAEDGSTHR 94

Query: 137  NDV---VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193
             D     +G +PIMLRS  CVL  K + EL  LGEC  D GGYF+I G+EKV++ QE++S
Sbjct: 95   IDSPKEFLGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKVVVAQERMS 154

Query: 194  KNRVIIDTDKKGNINASVTSSTETVK------SKTVIQM---------EKGKMYLLLNQF 238
             N V     K+ +  + V      V+      S   +QM         +  ++ + L   
Sbjct: 155  NNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRGQSQGNQIRMTLPYI 214

Query: 239  VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL---LLPSIEECANLDIYTQEKALEYL 295
               +P+++V +A+G  +D+++++ V  D   + +   L PS++E     +  Q  AL+++
Sbjct: 215  RVDVPVIIVFRALGFVADRDILEHVVYDFSDTEMMEQLRPSLDEA--FVVQNQTIALDFI 272

Query: 296  EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
              +   +  G   + R   A  +L+   L +V     +   K F+V  ++ +++   L +
Sbjct: 273  GRRGSATNIGR--SKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLER 330

Query: 356  DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLS 411
               DD+D+ G KRL+L+G L+  LF  LF+ +  +V    QK +D           F+L+
Sbjct: 331  IDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCID-------EGRDFNLA 383

Query: 412  QFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
              I    IT GL  +L+TGN+   R    R G++QVL RL++  TL H+ R++    +  
Sbjct: 384  SAIKSRVITDGLRYSLATGNWG-DRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREG 442

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K + PR L  + WG +CP +TPEG+A GLVKNLALM++V+    + P++       +E+L
Sbjct: 443  KQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENL 502

Query: 532  ELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCV 591
            E +S + + +P +  +  NG  +G HR P      +R LRR   I   VSV  + K++ +
Sbjct: 503  EEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKEL 562

Query: 592  YIASDGGRVCRPLVIADKGIS---RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENN 648
             I +D GRVCRPL+I  K      R+++ H+++L++G   +   L +GL+E +D  EE  
Sbjct: 563  RIYTDAGRVCRPLLIISKFSRQELRLRKSHIQKLVNGELGWTQLLVKGLVELVDTEEEET 622

Query: 649  ALIALYEGDA----TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
             +IA+   D     +   TH EI P  ILG+   +IP+P HNQSPRNTYQ AMGKQAMG 
Sbjct: 623  TMIAMVPSDLNETYSSTYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGI 682

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
             A N   RMD+L ++L YPQ+PL TTR +E + + +L +G NA VA+M Y+GY+ ED+++
Sbjct: 683  YASNFQQRMDTLSHVLHYPQKPLATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLI 742

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQK----YANSTSDRILRPDRTGPGAERMQVVHHSNLL 820
            MN++++DRG  R    + Y  ++Q+       +  +   RP R    A R    H S   
Sbjct: 743  MNQAAIDRGLFRSTFYRTY--VDQESIRGLGEAFHETFERPTRDQCTAMR----HGS--- 793

Query: 821  LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGET 880
               +D DGL APG  +   D+ I K +P    G  M          +    T   P+ E+
Sbjct: 794  YDKVDCDGLVAPGLRVSGADILIGKTAPTTPLG--MDGNLNHCQFTKQDSSTAMRPN-ES 850

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             +VD+V L +++ G    K   R  R P++GDKF+SRHGQKG  G    QED P++  G+
Sbjct: 851  GLVDQVMLSTNQEGMKFTKVRTRTIRIPQIGDKFASRHGQKGTIGMTYSQEDMPWTRDGV 910

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVK 1000
             PD+++NPH  PSRMT+G ++E L  K G   G+    + F + S     V+ I+  L +
Sbjct: 911  SPDIVVNPHAIPSRMTIGHLVECLQSKVGALTGKEGDATPFTDVS-----VDQIAGVLHE 965

Query: 1001 HGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
             G+  +G +++YSG TG  + A +F+GP +YQ+LKH+V DK+HAR  GP  MLTRQP EG
Sbjct: 966  LGYHRHGNEVMYSGHTGRMIHAKVFLGPTFYQRLKHLVDDKIHARSRGPVTMLTRQPMEG 1025

Query: 1061 RARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGIC 1120
            RAR+GGLR+GEMERDCL+++G S  + +R+  +SDP+ V VC  CG++ + + +     C
Sbjct: 1026 RARDGGLRMGEMERDCLVSHGVSSFLRDRMFANSDPYAVHVCTSCGMIAHADLRKHLYWC 1085

Query: 1121 ST--CKNGD-NISSMKLPYACKLLIQ 1143
            +   C++    I  + +PYACKLL Q
Sbjct: 1086 NNKDCQHAKARIVRVHIPYACKLLFQ 1111


>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
          Length = 1233

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/1074 (36%), Positives = 605/1074 (56%), Gaps = 69/1074 (6%)

Query: 126  GSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKV 185
            GS T +    K    +G +PIMLRS  CVL  K + EL  LGEC  D GGYF+I G+EKV
Sbjct: 186  GSSTHRIDSPKE--FLGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKV 243

Query: 186  LLIQEQLSKNRVIIDTDKKGNINASVTSSTETVK------SKTVIQM--EKGKMYLLLNQ 237
            ++ QE++S N V     K+ +  + V      V+      S   +QM  + G+     NQ
Sbjct: 244  VVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRGQSQGNQ 303

Query: 238  FVKKIPIMVV-------MKAMGMESDQEVVQMVGRDPRYSAL---LLPSIEECANLDIYT 287
                +P + V        +A+G  +D+++++ V  D   + +   L PS++E     I  
Sbjct: 304  IRVTLPYVRVDVPVIVVFRALGFVADRDILEHVVYDFSDTEMMERLRPSLDEA--FVIQN 361

Query: 288  QEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
            Q  AL+++  +   +  G   + R   A  +L+   L +V     +   K F+V  ++ +
Sbjct: 362  QTIALDFIGRRGSATNIGR--SKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHK 419

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPS 403
            ++   L +   DD+D+ G KRL+L+G L+  LF  LF+ +  +V    QK +D       
Sbjct: 420  LLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCID------- 472

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
                F+L+  I    +T GL  +L+TGN+   R    R G++QVL RL++  TL H+ R+
Sbjct: 473  DGRDFNLASAIKSRVVTDGLRYSLATGNWG-DRKDASRAGVSQVLNRLTYASTLSHLRRL 531

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K + PR L  + WG +CP +TPEG+A GLVKNLALM++V+    + P++   
Sbjct: 532  NTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFL 591

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
                +E+LE +S + + +P +  +  NG  +G HR P      +R LRR   I   VSV 
Sbjct: 592  EEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVV 651

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGIS--------------RIKEHHMKELLDGVRSF 629
             + K++ + + +D GRVCRPL+I +   +              R+++ H+++L++G   +
Sbjct: 652  RDIKEKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGDLGW 711

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDA----TPDTTHIEIEPFTILGVIAGLIPYPHH 685
               L +GL+E +D  EE  A+IA+   D     +   TH EI P  ILG+   +IP+P H
Sbjct: 712  TQLLVKGLVELIDTEEEETAMIAMIPSDLNEPYSSTYTHCEIHPSMILGICGSIIPFPDH 771

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQ AMGKQAMG  A N   RMD+L ++L YPQ+PL TTR +E + + +L +G 
Sbjct: 772  NQSPRNTYQSAMGKQAMGIYASNFQQRMDTLSHVLHYPQKPLATTRAMEHLHFRELPSGV 831

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA+M Y+GY+ ED+++MN++++DRG  R    + Y+          S   L+     
Sbjct: 832  NAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFYRTYSDKEHNKGIWDSPEYLQETFER 891

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
            P  +    + H +   +  D DGL +PG  +  +D+ + K SP    G     +G +   
Sbjct: 892  PNRDECTAMRHGSYEKI--DSDGLVSPGVRVSGSDILVGKTSPSWHSGLKAERSGPSK-- 947

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
             R +  T + P+ E+ +VD+V L ++++G    K   R  R P++GDKF+SRHGQKG  G
Sbjct: 948  -RDSSTTMR-PN-ESGLVDQVMLSTNQDGMKFTKVRTRTIRIPQIGDKFASRHGQKGTIG 1004

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
                QED P++  G+ PD+I+NPH  PSRMT+G ++E L  K G   G+    + F + S
Sbjct: 1005 MTYAQEDMPWTRDGVSPDIIVNPHAIPSRMTIGHLVECLQSKVGALTGKEGDATPFTDVS 1064

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                 V+ I+  L + G+  +G +++YSG TG  + A +F+GP +YQ+LKH+V DK+HAR
Sbjct: 1065 -----VDQIAGVLHELGYHRHGNEVMYSGHTGRIIHAKVFLGPTFYQRLKHLVDDKIHAR 1119

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  MLTRQP EGRAR+GGLR+GEMERDCLI++G S  + +R+  +SDP+ + VC +C
Sbjct: 1120 SRGPVTMLTRQPMEGRARDGGLRMGEMERDCLISHGVSSFLRDRMFANSDPYSIHVCTLC 1179

Query: 1106 GLLGYYNHKLKAGICST--CKNGD-NISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            GL+ + + + +A  C+   C++ + +I  + +PYACKLL QEL +M I PR+++
Sbjct: 1180 GLIAHADLRKRAFWCNNKDCQHANSSIVRVHIPYACKLLFQELMAMCIAPRIQV 1233



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 30  DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV------------SGIDPS 77
           D + ++  +   +GLV+Q LDSF+ F+   ++++V  +  +V            +    +
Sbjct: 7   DAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELVVKPEAQYAPGQLAATPST 66

Query: 78  IFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ 125
            F+ F  V + +P+ T  DG +  + PH  RL +MTYA+P+ V+I  V+
Sbjct: 67  YFVLFNQVYVSKPTATEKDGTTSNMFPHEARLRNMTYASPMYVDISCVE 115


>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
          Length = 1261

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1259 (33%), Positives = 648/1259 (51%), Gaps = 165/1259 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV Q  DSF+ F  T I+ +V     I        S     I LR 
Sbjct: 24   DCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGMKIALRR 83

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  V + +P+++  DG    L P+ CR  ++TYA+P+ +NI               
Sbjct: 84   YEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAVEREIPLH 143

Query: 122  --------EYVQGSHTE-----------------KTTMEKNDVVIGRIPIMLRSCRCVLY 156
                    EY +                      K+   KN V +G++PIM++S  C L 
Sbjct: 144  EMDDAQQAEYARTRENPTKLVWEQEESPDDDEAGKSEDWKNMVFVGKLPIMVKSKICHLS 203

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-----INASV 211
             + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK         A +
Sbjct: 204  RETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPYTYTAEI 261

Query: 212  TSSTETVKSKTVIQMEKGKMYLLLNQ--------------FVKK-IPIMVVMKAMGMESD 256
             S+ E  K   +I   + K+Y   +               FVK  +PI +V +A+G+ SD
Sbjct: 262  RSALE--KGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSD 319

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D + S +L    P IEE     +  +E AL+++  +  R   G     R  
Sbjct: 320  EDILNHICYDRKDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGREKRVR 377

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF- 432
             L++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+TGN+ 
Sbjct: 438  PLLAKLFRGIVRRMNNELSNYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLATGNWG 494

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
            D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +T
Sbjct: 495  DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG 
Sbjct: 555  PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE--EYEPLRYPHATKIFVNGT 612

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA---DK 609
             +G H+ PK     +   RR   +   VS+    + +   I SD GRV RP+      D 
Sbjct: 613  WVGVHQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDD 672

Query: 610  GISRIKEHHM---KELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIA 652
              + I++ H+   K+L++ +                ++  +R G +EYLD  EE  ++I 
Sbjct: 673  PETGIEKGHLVLSKDLVNKLAKEQAEPPDDPSEKIGWEGLIRAGAVEYLDAEEEETSMIC 732

Query: 653  LYEGD----------------------------ATPDT---THIEIEPFTILGVIAGLIP 681
            +   D                              P T   TH EI P  ILG+ A +IP
Sbjct: 733  MTPEDLELYRLQKAGVALDDDNGDDLNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIP 792

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 793  FPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFREL 852

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P
Sbjct: 853  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKP 912

Query: 802  DRTGPGAERMQVVHHSNLLLL-----ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
                         H S L +       LD+DG+ APG  +   D+ I K +P++     +
Sbjct: 913  ------------FHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDL 960

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
               G   S ++    +      E  ++D V L  + +    +K  +R T+ P++GDKF+S
Sbjct: 961  ---GTRTSVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKIPQIGDKFAS 1017

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K     G   
Sbjct: 1018 RHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEG 1077

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+H
Sbjct: 1078 DATPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRH 1132

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD 
Sbjct: 1133 MVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDA 1192

Query: 1097 FEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            F V VC +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1193 FRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1251


>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Strongylocentrotus purpuratus]
          Length = 1142

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1203 (34%), Positives = 631/1203 (52%), Gaps = 130/1203 (10%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI- 70
            D+  PD+ + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV  +  + 
Sbjct: 15   DDLTPDQWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVD 66

Query: 71   ----------VSGIDPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
                         +     L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHMTTEQEVPTRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NIEYV---QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGY 176
            +I       G   ++T  +K    IG+IPIMLRS  C+L G  + +L  L ECPLDPGGY
Sbjct: 127  DITKTVIKDGEDPQETIHQKT--FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGY 184

Query: 177  FIIKGTEKVLLIQEQLSKNRVII--DTDKKGNINASVTSSTETVKSKT----VIQMEKG- 229
            FII G+EKVL+ QE++S N V +    D K    A   S  E     T    V  M KG 
Sbjct: 185  FIINGSEKVLIAQEKMSTNSVYVFAKKDSKYAFTAECRSCLEHSSRPTSTLWVHMMAKGG 244

Query: 230  ----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                      +M  +L    +++PIMVV +A+G  +D+++++ +     DP    ++ PS
Sbjct: 245  QGARKSAIGQRMISVLPYIRQEVPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 304

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            ++E     I  Q  AL ++  +  R   G     R   A  IL+   L +V V +     
Sbjct: 305  LDEA--FVIQEQSVALNFIGARGARP--GVTKERRIKYAREILQKEMLPHVGVSDFCETK 360

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
            K +++   + R++ A + +  +DD+D+ GNKRL+L+G L++ LF  LFK ++ EV+    
Sbjct: 361  KAYFLGYCVHRLLLASIGRREVDDRDHYGNKRLDLAGPLLAFLFRALFKNLLKEVRMYAQ 420

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIG 455
              + K      F++   I    IT GL+ +L+TGN+ D K+    R G++QV   L    
Sbjct: 421  KFIDK---GKDFNMELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVRHILHSFI 477

Query: 456  TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
               H                                  +G A GLVKNLALM +++   +
Sbjct: 478  VYYH----------------------------------KGHAVGLVKNLALMAYISVGSQ 503

Query: 516  EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK 575
              P++       +E+LE ++   ++      V  NG  +G HR P+   + ++KLRR   
Sbjct: 504  PSPILEFLEEWSMENLEEIAPSAINEATKIFV--NGCWVGIHRDPEQLMNTLKKLRRQMD 561

Query: 576  I-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH---MKELLDGVRSFDD 631
            I    VS+  + ++R + I +D GR+CRPL+I +     +K+ H   +KE      S+ D
Sbjct: 562  IIVSEVSMVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKRHVSMLKEREYNNYSWQD 621

Query: 632  FLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIAGL 679
             +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A +
Sbjct: 622  LVASGVVEYIDTMEEETVMLAM-----TPDDLQEKGMGYCSTYTHCEIHPSMILGVCASI 676

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL TTR++E + + 
Sbjct: 677  IPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTTRSMEYLRFR 736

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AG N+ VA+ SY+GY+ ED++++N S++DRGF R +  + Y     K A    +   
Sbjct: 737  ELPAGINSVVAIASYTGYNQEDSVILNASAIDRGFFRSVFYRSYKDAESK-AVDKDEMFE 795

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R      R       N +   L++DG+  PG     + V  N++  +     +  P 
Sbjct: 796  KPSRETCQGMR-------NAVYDKLEEDGIIPPG-----SRVSGNRDFXICVNXYVXRPF 843

Query: 860  GQ---TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
                 T  R+     +      ET ++D+V +  +++G    K  +R  R P++GDKF+S
Sbjct: 844  KALEGTSRRFTKRDCSTFMRSTETGIIDQVMVSINQDGYKFCKIKVRSVRTPQIGDKFAS 903

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG   + ED PF+  GI PD+I+NPH  PSRMT+G +IE L GK   S G   
Sbjct: 904  RHGQKGTCGIKYRVEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSSSKGEIG 963

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F +    +  V+ IS  L ++G+   G ++++ G TG  +   +F+GP YYQ+LKH
Sbjct: 964  DATPFND----SVNVQKISNLLHEYGYHQRGNEVLFCGFTGRKIGTQVFLGPTYYQRLKH 1019

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC I++GA+  + ERL   SDP
Sbjct: 1020 MVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 1079

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
            + V VC  CGL+   N +     C  CKN   IS ++LPYACKLL QEL SM I PR+ +
Sbjct: 1080 YRVHVCNFCGLIAIANLRNNTFECRGCKNKTQISQVRLPYACKLLFQELMSMCIAPRMMV 1139

Query: 1157 AEA 1159
              A
Sbjct: 1140 LPA 1142


>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
 gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1253 (33%), Positives = 648/1253 (51%), Gaps = 154/1253 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP---------SIFL 80
            D + ++  F + +GLV Q  DSF+ F  T I+ +V  N+  V  +D          SI L
Sbjct: 25   DCWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLV--NEYSVISLDQPNPPSPPGVSIAL 82

Query: 81   R-----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI------------- 121
            R     F  V + +P+++  DG    L P+ CR  ++TYA+P+ + I             
Sbjct: 83   RRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSVAVEKEVP 142

Query: 122  ----------EYVQ-GSHTEKTTME---------------KNDVVIGRIPIMLRSCRCVL 155
                      EY + G +  K   E               K+ V +G++PIM++S  C L
Sbjct: 143  LHEMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADDSWKDMVFVGKLPIMVKSKICHL 202

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN--------- 206
              + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           
Sbjct: 203  SSEHDDNLFLVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPYTYTAE 260

Query: 207  INASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I +++   +  + S  +    KG          ++  L      +P+ +V +A+G+ SD+
Sbjct: 261  IRSALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKADLPVAIVFRALGVVSDE 320

Query: 258  EVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            +++  +  D   S +L    P IEE     +  +E AL+++  +  R   G     R   
Sbjct: 321  DILNHICYDRTDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGREKRVRV 378

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G 
Sbjct: 379  AKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGP 438

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-D 433
            L++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+TGN+ D
Sbjct: 439  LLAKLFRGIVRRMNTELSNYLKRCVEG---NRHFNLAVGIKPGTLSNGLKYSLATGNWGD 495

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
             K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TP
Sbjct: 496  QKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETP 555

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EG+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG+ 
Sbjct: 556  EGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE--EYEPLRYPHATKIFVNGVW 613

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA------ 607
             G H  PK     +   RR   +   VS+  + + R   + SD GRV RP+         
Sbjct: 614  CGVHSDPKHLVSQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDH 673

Query: 608  DKGISRIKEHHMKELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIAL 653
            + GI++      K+L++ +                ++  +R G IEYLD  EE  A+I +
Sbjct: 674  ESGIAKGALVLTKDLVNKLAKEQAEPPEDPSMKIGWEGLIRAGTIEYLDAEEEETAMICM 733

Query: 654  YEGD----------------------------ATPDT---THIEIEPFTILGVIAGLIPY 682
               D                              P T   TH EI P  ILG+ A +IP+
Sbjct: 734  TPEDLDLYRMQKAGYVVDDDNTDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPF 793

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L 
Sbjct: 794  PDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELP 853

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P 
Sbjct: 854  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEVFEKPF 913

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            +      RM+   +       LD+DG+ APG  +   D+ I K +P++     +  T  T
Sbjct: 914  QQ--STLRMKHGTYDK-----LDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLG-TRTT 965

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
              + R      +    E  +VD V +  + +    +K  +R T+ P++GDKF+SRHGQKG
Sbjct: 966  VHQRRDISTPLRST--ENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKG 1023

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
              G   +QED PFS  G+ PD+I+NPH  PSRMT+  +IE L  K     G     + F 
Sbjct: 1024 TIGVTYRQEDMPFSREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDATPFT 1083

Query: 983  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1042
            +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+HMV DK+
Sbjct: 1084 DV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKI 1138

Query: 1043 HARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC 1102
            HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V VC
Sbjct: 1139 HARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHVC 1198

Query: 1103 RVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             VCGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1199 EVCGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1251


>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
          Length = 1261

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1258 (33%), Positives = 650/1258 (51%), Gaps = 162/1258 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV Q   SF+ F  T I+ +V    +I        S  +  I +R 
Sbjct: 23   DCWTVISSFFESKGLVSQQTASFDEFTQTTIQDLVSEYSKISLDQPNPPSTDERKISVRR 82

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  + + +PS++  DG    L P+ CR  ++TYAAP+ + I               
Sbjct: 83   YEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAVETEIPLH 142

Query: 122  EYVQGSHTE-------------------------KTTMEKNDVVIGRIPIMLRSCRCVLY 156
            E     HTE                         K    K+ V +G++P+M++S  C L 
Sbjct: 143  ELDDAQHTEYAKSGELPTRLAWESEDVSEPENANKPDAWKDMVFVGKMPVMVKSKVCHLS 202

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN---------I 207
             + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           I
Sbjct: 203  REHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPYTYTAEI 260

Query: 208  NASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             +++   +  + S  +    KG+         ++  L      +P+ +V +A+G+ SD++
Sbjct: 261  RSALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPFVKSDLPVAIVFRALGVVSDED 320

Query: 259  VVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            ++  +  D + S +L    P IEE     +  +E AL+++  +  R   G   + R   A
Sbjct: 321  ILNHICYDRKDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGRDKRIRVA 378

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L
Sbjct: 379  RDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPL 438

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  + + M SE+   +   +     +  F+L+  I   +++ GL+ +L+TGN+ D 
Sbjct: 439  LAKLFRGIMRRMHSELANYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLATGNWGDQ 495

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 496  KKAANSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 555

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG  +
Sbjct: 556  GQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIE--EYEPLRYPHATKIFVNGTWV 613

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G H+ PK   D +   RR   +   VS+  + + +   I SD GRV RP+    +     
Sbjct: 614  GVHQDPKHLVDQVFDTRRKSYLQYEVSLIRDIRDQEFKIFSDAGRVMRPVFTVQQKNDPE 673

Query: 610  -GISRIKEHHMKELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIAL- 653
             G+ + +    K+L++ +                ++  ++ G IEYLD  EE  ++I + 
Sbjct: 674  TGLEKGQLGLTKDLVNKLAQEQADPPDDSELKMGWEGLIKAGAIEYLDAEEEETSMICMT 733

Query: 654  -------------------YEG---------DATPDT---THIEIEPFTILGVIAGLIPY 682
                               +EG            P T   TH EI P  ILG+ A +IP+
Sbjct: 734  PEDLELYRLQKAGLSVDDDHEGGDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPF 793

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L 
Sbjct: 794  PDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELP 853

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P 
Sbjct: 854  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKP- 912

Query: 803  RTGPGAERMQVVHHSNLLLL-----ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
                        H S L +       LD+DG+ APG  +   D+ I K +P++     + 
Sbjct: 913  -----------FHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDLG 961

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
             T  T  + R      +    E  +VD+V +  + +    +K  +R T+ P++GDKF+SR
Sbjct: 962  -TRTTAHQRRDISTPLRST--ENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASR 1018

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K     G    
Sbjct: 1019 HGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGD 1078

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
             + F +      TV+S+S+ L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+HM
Sbjct: 1079 ATPFTDV-----TVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHM 1133

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F
Sbjct: 1134 VDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAF 1193

Query: 1098 EVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1194 RVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1251


>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1278

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1249 (33%), Positives = 648/1249 (51%), Gaps = 147/1249 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-RANDRIVSGIDP------SIFLR- 81
            D + ++  +  ++GLV Q +DSF+ F ++ I+ +V    D  +   +P       I LR 
Sbjct: 43   DCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLVDEYADLTLDHPNPGDDQGRDIALRR 102

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE-------------- 122
                F +V I +P++T + G +  L P+ CR  ++TY+AP+   +               
Sbjct: 103  YDIHFGNVMISKPTLTEISGETTSLLPYECRDRNLTYSAPMYCKVSKRARVAINEPVPLN 162

Query: 123  ----------YVQGSH--TEKTTMEKND---------------VVIGRIPIMLRSCRCVL 155
                         G H  T +   E++D               + +G++P+M++S  C L
Sbjct: 163  ELDDEQHELMRETGEHPMTIRWEEEESDMPGEGSKGENDRGDLIFLGKLPVMVKSQICHL 222

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINASVT 212
            YG+D+  L  L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A + 
Sbjct: 223  YGEDDESLFVLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIR 282

Query: 213  SSTE---------TVKSKTVIQMEKGKMY----LLLNQFVKKIPIMVVMKAMGMESDQEV 259
            S+ E          +K  T    EKG++     + L    + + + +V +A+G+ SD+++
Sbjct: 283  SALEKGSRLISSLQMKLHTKASNEKGRLANTVSVTLPYVREDVSLAIVFRALGIVSDEDI 342

Query: 260  VQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            +  +  D + + +L    P IEE     I  +E AL+++ GK      G    +R   A 
Sbjct: 343  LNHICYDRKDTQMLEALRPCIEEA--FCIQDREIALDFI-GKRGNGNMGQNRMNRIRAAK 399

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             +L+   L ++         K F++  M+ ++++  L +   DD+D+ G KRL+L+G L+
Sbjct: 400  DLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLQCALGRRDTDDRDHFGKKRLDLAGPLL 459

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  + + M  ++   +   L     +  F L+  I  +++T  L+ +L+TGN+ D K
Sbjct: 460  AKLFRGVVRRMTQDLMGYMKRCLDT---NKHFTLALGIKANTLTNALKYSLATGNWGDQK 516

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 517  KAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 576

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNL+LM +V+      P++      G++ LE    E L  PN+  V  NG  +G
Sbjct: 577  QACGLVKNLSLMCYVSVGTPADPIVDFMTARGMDVLE--EYEPLRAPNATKVFVNGTWVG 634

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD------- 608
             H  PK    +++ LRR   I   VS+  + ++R   I SD GRV RPL   +       
Sbjct: 635  VHNDPKQLVTLVQDLRRKNVISFEVSLVRDIREREFKIFSDAGRVMRPLFTVEQEEKGNH 694

Query: 609  ---KGISRIKEHHMKELLDG---------VRSFDDFLREGLIEYLDVNEENNALIALYEG 656
               KG   + + H+  L               +   L+ G IEYLD  EE   +I +   
Sbjct: 695  GVEKGQLILNKDHIARLQRDKELGKYHPDYWGWQGLLKSGAIEYLDAEEEETTMICMTPQ 754

Query: 657  D------------------------------ATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
            D                               T   TH EI P  +LG+ A +IP+P HN
Sbjct: 755  DLDDFRMTKLGFHIETTSGQGNNRIRTKVNKTTHMYTHCEIHPAMLLGICASIIPFPDHN 814

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQN
Sbjct: 815  QSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQN 874

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA++ YSGY+ ED++VMN+SS+DRG  R +  + YT   ++   +  +   +P R   
Sbjct: 875  AIVAILCYSGYNQEDSVVMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEMFEKPTR--- 931

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
              + +++ H +      LD DG+ APG  +   D+ I K SP+    + +   GQ   ++
Sbjct: 932  -GDTLRLKHGT---YDKLDADGIIAPGIRVSGEDIIIGKTSPINPDNAEL---GQRQQQH 984

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
                 +      E+ +VD V L ++++G   +K  +R T+ P++GDKF+SRHGQKG  G 
Sbjct: 985  VKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGL 1044

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              + ED PF+  GI PD+I+NPH  PSRMT+  ++E L  K     G     + F +   
Sbjct: 1045 TYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLLSKVATLKGLEGDATPFTDV-- 1102

Query: 987  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
               TV+S+S+ L + G+   G +++Y G TG  L+A  F GP YYQ+L+HMV DK+HAR 
Sbjct: 1103 ---TVDSVSDLLREQGYQSRGFEILYHGHTGRKLRAQCFFGPTYYQRLRHMVDDKIHARA 1159

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD + V +C +CG
Sbjct: 1160 RGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAYRVHICEICG 1219

Query: 1107 LLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            L+    +  K    C  CKN   I+ + +PYA KLL QEL SM I  R+
Sbjct: 1220 LMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMGIASRM 1268


>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1222

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1236 (33%), Positives = 640/1236 (51%), Gaps = 142/1236 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS------------ 77
            D + LL  + K   L++Q +DSFN F+ + I+ IV     ++  ID S            
Sbjct: 13   DTWTLLNSYFKENNLIRQQIDSFNEFIESKIQDIVDDIPPLIV-IDDSKKKTGSFEFSKN 71

Query: 78   --IFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQ--------G 126
              + LR   + I +P+ +  +G++  L P   RL + +Y++P+  +I             
Sbjct: 72   RKLILRLGQLHISKPTFIEENGMTHSLRPIDARLRNFSYSSPLYCDISITTLQIAREKEE 131

Query: 127  SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
                    E    ++GR+PIM++S  CVL      ++ +  ECP D GGYFII G+EKV+
Sbjct: 132  EREIFEKEEHQKTLLGRLPIMIKSRFCVLDKLLPGDMVKFKECPFDAGGYFIINGSEKVM 191

Query: 187  LIQEQLSKNRVIIDTDKKGNINAS------------------------VTSSTETVKSKT 222
            + QEQL+ N V I   K+ N ++                          + S  TVK   
Sbjct: 192  VGQEQLAWNHVYIFPKKEINKSSEKIVFYTNKGILFFAECRSVAEFGRWSPSLLTVKVCV 251

Query: 223  VI--------------QMEK-----GKMYL--LLNQFVKKIPIMVVMKAMGMESDQEVVQ 261
             +              Q E      G +YL  +L  F K IP+  + KA+G E++ E++ 
Sbjct: 252  TVFPKKKKNKSTKNDNQKESLIHLYGGLYLRAILPYFKKDIPVTWIFKALGFENENEILN 311

Query: 262  MV---GRDPRYSALLLPSIEE---------CANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
             V     D     ++  SIE+           N  I  QE AL  +   + + T G    
Sbjct: 312  YVCYGDEDEDLIEVIRYSIEDDRLTTANIFSNNSFILDQETALAVIGQHISKGTQGI--- 368

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             R  +A+ IL+  FL ++ +       K F++  ++ +++   + K   DD+D+ G+KRL
Sbjct: 369  -RIKQAYEILQKEFLPHIGIGQGFELRKGFFLGYIINKLMNTQIGKRKTDDRDHYGHKRL 427

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVRDSITVGLERTLS 428
            +++G L+S+LF  L   +I +++ ++     K S    F  +  F+    IT G++  L+
Sbjct: 428  DVAGSLLSILFRQLLGKVIKDLRVSLQ---KKVSLHKNFQPIFDFLKSRLITTGIQFALA 484

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+ + + ++ R G++QVL RL+F   L H+ R++    +  K++ PR L  + WG++C
Sbjct: 485  TGNWGIDK-QVSRTGVSQVLNRLTFSSALSHLRRLNSPGGRDGKLTKPRQLHNTHWGLIC 543

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG ACGLV+NLA+   VT      P++ L     +++L  +   ++    SF + 
Sbjct: 544  PAETPEGHACGLVRNLAMTAFVTIGSPSDPILELLEESKIKNLSKIGFGKVRQ--SFKIF 601

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI-- 606
             NG  +G H  P    +++RK RR+GKI E +S  ++  ++ + I +D GR+ RPL++  
Sbjct: 602  VNGCWIGIHYNPLLLINLIRKARRSGKIREEISFSIDNLEKEIRIFTDSGRISRPLLVVK 661

Query: 607  ----------ADKGISRIKEHHMKELLDGVRS--FDDFLREGLIEYLDVNEENNALIALY 654
                       +K  S + E    E L G ++  F D ++EG++EY+D  EE   LIA+ 
Sbjct: 662  KNNQYNRQNLGEKFFSFLLEKRHIEKLKGDKNYLFSDLIKEGIVEYIDAEEEEMCLIAMS 721

Query: 655  EGDAT--------PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
              +           D TH EI P  ILGV    IP+P HNQSPRNTYQ AMGKQA+G  +
Sbjct: 722  IDEVIEQNLKTTETDFTHSEIHPSMILGVCGSFIPFPDHNQSPRNTYQSAMGKQAIGIYS 781

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD++ ++L YPQ+PL+ TR ++ + Y     G NA VA+  Y GY+ ED+I+M+
Sbjct: 782  MNFQFRMDTMAHILYYPQKPLVVTRAMDFLNYKDFPNGINAIVAIACYGGYNQEDSIIMS 841

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            + ++DRG  R +  + Y    +K        +    +          V   +     LD 
Sbjct: 842  QDAIDRGLFRSVFYRSYKD-EEKIKFGGQKEVFETPKI------KDCVGFKSGSYTKLDL 894

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG-------- 878
            DGL + G  +  +D+ I K  P            + +    S+ + YK            
Sbjct: 895  DGLISEGTKVSGDDIIIGKTVPFNFF--------EAEYNLNSSERVYKFKKDSSTSVRSF 946

Query: 879  ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 938
            E+ +VD+V + +   G   +K  IR  R P++GDKF+SRHGQKG+ G + +Q D PF+  
Sbjct: 947  ESGIVDKVLIGTTDIGTKLVKIRIRSVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTPD 1006

Query: 939  GICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETL 998
            GI P++IMNPH  PSRMT+G ++E L  K     G    GS F + S     VE I+E L
Sbjct: 1007 GIIPEIIMNPHAIPSRMTIGHLLECLLSKVAALGGFEGDGSPFSKIS-----VEKITEQL 1061

Query: 999  VKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1058
             K  +   G + + +G TG  L+A IF+GP YYQ+LKHMV DK+H+R  GP  +LTRQP 
Sbjct: 1062 EKFNYEKFGWENLANGATGELLEAKIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPV 1121

Query: 1059 EGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG 1118
            EGRAR+GGLR GEMERDC+I++GA++ + +RL+  SD F V VC  CG +   NHK    
Sbjct: 1122 EGRARDGGLRFGEMERDCMISHGAAVFLKDRLLDQSDAFTVFVCDFCGFIAISNHKQNIY 1181

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             C +CK  ++IS +K+PYACKLL QEL SM I PR+
Sbjct: 1182 ECKSCKPRNSISQIKIPYACKLLFQELMSMAIGPRM 1217


>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma vivax
            Y486]
          Length = 1186

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1192 (36%), Positives = 646/1192 (54%), Gaps = 90/1192 (7%)

Query: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKIVRANDR 69
            D++  +A V S  D ++++  F + +GLV Q +DS+N F+        + +  + R + +
Sbjct: 26   DQEYDSAEVDSE-DVWEIISSFFREKGLVHQQIDSYNDFLLRIPRMARSLLEVVPRQDSQ 84

Query: 70   IVSG----IDPSIF-LRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTY--AAPIL 118
               G    ++P  + L  +DV +G PS    G S +    L P+ CRL DMTY   A + 
Sbjct: 85   FEPGMQLDVEPDQYRLSLEDVVVGNPSHETSGFSRQEMHPLFPNECRLRDMTYDANAQVT 144

Query: 119  VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            + I   +    +       ++ +GRIPIML+S RC L  KDE EL RL ECP D GGYFI
Sbjct: 145  LGIRVYRSREEQPYRTFLQNMELGRIPIMLKSIRCNLLYKDEDELPRLNECPHDQGGYFI 204

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEK------G 229
            I GTEKVL+ QE+ + N V   T  KG    I + V  S    ++  +I   K      G
Sbjct: 205  INGTEKVLVAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTFQIIMPYKKTGPGHG 264

Query: 230  KMYLL--LNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLD 284
               LL  + Q  + IP+ V+ +A+ M SD+E++Q V  D + +A+L     S+E+ + L 
Sbjct: 265  YENLLCRVAQMDELIPLFVLFRALDMGSDREILQTVVPDLKDAAMLEMLRGSMEDASTLQ 324

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
            I+T+++AL ++  ++ R    S  N  RE +   ++RD+ L ++ V     R KC ++  
Sbjct: 325  IFTRDEALWFIGKRLGRQD--SRENLQREAQGL-LMRDL-LPHMGVDCTADRGKCLFIGY 380

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++   L +    D+D++G+KR++++G L++         +  E+ KTV    +  S
Sbjct: 381  MVHRLLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNHFLVQVRKEMSKTVHDYST--S 438

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
            R      ++ +    IT G+ R L+TGNF   +    + G++Q L RL++  +L ++ R+
Sbjct: 439  RGGVVSFAKILHSRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRI 498

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMT-------HVTTDEEE 516
                  S K + PR L  +QWG +CP +TPEG + GL+KNLALM        H +  +  
Sbjct: 499  QNPISASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTSVAQTV 558

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
               I+  + +G+ DL         +     V  NG ++G HR P+     +R  RR G++
Sbjct: 559  QARITGFHSVGLSDLA--------DVRLARVFVNGTLIGVHRDPERLLRELRARRRGGEL 610

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR--------S 628
               VS+  + + R + + SD GR  RPL + +K   ++++  M ELL+  R        S
Sbjct: 611  SNEVSIVRDIRDREIRVFSDAGRCIRPLFVVEKSSLKLRKAGMGELLEPSRAPGGQRQIS 670

Query: 629  FDDFLREGLIEYLDVNEENNALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHN 686
            ++  ++ G +E +D  EE++ LIA+   +   +   +H E++P  ILG+ A +IPYP+HN
Sbjct: 671  WNRVMKRGYVELIDCEEEDSLLIAMAPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHN 730

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRNTYQ AMGKQAMG  A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG N
Sbjct: 731  QSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHILFYPQKPLVRTKAMSYMRSNDLPAGHN 790

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA+  YSGY+ ED+I+M++S+++RGF R +  + Y A +++      +    PDR   
Sbjct: 791  AVVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKA-SEENKKEGKEVFEVPDR--- 846

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
                 ++ H        LD DGL  PG  +   D+ + K  P+       + T  T    
Sbjct: 847  -----KICHVKRADYSKLDTDGLIKPGMPVMGGDILVGKTVPIPESMRENATTANTRIMK 901

Query: 867  R----SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
            R    S+R   KG      VVD+V L  +K G+   K  +R  + P +GDKF SRHGQKG
Sbjct: 902  RDCSISSRTAEKG------VVDKVMLTENK-GNRFTKVKVRTIKIPNIGDKFCSRHGQKG 954

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
              G   +QED PF+  GI PDLI+NPH  PSRMTV  +IE L GK  V+C  +  G  + 
Sbjct: 955  TNGIQFRQEDMPFNSDGISPDLIINPHAIPSRMTVAHLIETLAGK--VAC--YKGGEVYA 1010

Query: 983  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1042
             P      VE   + L +      G + +Y+G TG PL+  IF GP YYQ+LKH+  DK+
Sbjct: 1011 TPFCSV-VVEDFGKALQQLKCHRYGNECLYNGHTGLPLEHLIFFGPTYYQRLKHLSGDKI 1069

Query: 1043 HARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC 1102
            HAR  GP   L RQPTEGRA  GGLR GEMERDC+++YGAS  + ERL   SD + V VC
Sbjct: 1070 HARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYAVHVC 1129

Query: 1103 RVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +CG +   + +     C  C N   IS + +PYACKLL QEL SM I+PRL
Sbjct: 1130 NMCGTICAADTEQNVYNCQGCDNDARISHVLMPYACKLLFQELMSMAILPRL 1181


>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like, partial
            [Takifugu rubripes]
          Length = 982

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1011 (37%), Positives = 574/1011 (56%), Gaps = 73/1011 (7%)

Query: 185  VLLIQEQLSKNRVIIDTDKKGNI------NASVTSSTETVKSKTVIQMEKG--------- 229
            VL+ QE+++ N V +   K           + + +S+    +  V  M +G         
Sbjct: 1    VLIAQEKMATNTVYVFAKKDSKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAI 60

Query: 230  --KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLD 284
              ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++E     
Sbjct: 61   GQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEA--FV 118

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K +++  M
Sbjct: 119  IQEQNVALNFIGSRGAKP--GVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYM 176

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILS 400
            + R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ E+    QK +D    
Sbjct: 177  VHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFID---- 232

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
               R   F+L   I    I+ GL+ +L+TGN+ DVK+    R G++QVL RL+F  TL H
Sbjct: 233  ---RGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSH 289

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + RV+    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P+
Sbjct: 290  LRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 349

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GE 578
            +       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR   I   
Sbjct: 350  LEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVS 407

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLRE 635
             VS+  + ++R + I +D GR+CRPL+I +K    +K  H+ +L +      S+ D +  
Sbjct: 408  EVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVAS 467

Query: 636  GLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIAGLIPYP 683
            G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A +IP+P
Sbjct: 468  GVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFP 522

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L A
Sbjct: 523  DHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPA 582

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            G N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      +   +P R
Sbjct: 583  GINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTR 642

Query: 804  TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 863
                 E  Q + H+  +   LDDDGL APG  +   DV I K   L      +     T+
Sbjct: 643  -----ETCQGMRHA--IYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPDNEDELE---STN 692

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
             RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG 
Sbjct: 693  RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 752

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
            CG   +QED PF+  GI PD+I+NPH  PSRMTVG +IE L GK  VS  +   G A   
Sbjct: 753  CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSANKGEIGDA--T 808

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
            P   A  V+ +S  L ++G+   G +++Y+G TG  L + IF+GP YYQ+LKHMV DK+H
Sbjct: 809  PFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIH 868

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            +R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC 
Sbjct: 869  SRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCN 928

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 929  LCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 979


>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
            ARSEF 2860]
          Length = 1261

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/1257 (32%), Positives = 647/1257 (51%), Gaps = 161/1257 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV Q   SF+ F  + I+ +V    +I        S  D  I +R 
Sbjct: 24   DCWTVISSFFESKGLVSQQTASFDEFTQSTIQDLVSEYSKISLDQPNPPSNDDRKISVRR 83

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  + + +PS++  DG    L P+ CR  ++TYAAP+ + I               
Sbjct: 84   YEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAVETEIPLH 143

Query: 122  --------EYVQG-----------------SHTEKTTMEKNDVVIGRIPIMLRSCRCVLY 156
                    EY +                   ++ K    K+ V +G++P+M++S  C L 
Sbjct: 144  ELDDAQQTEYAKTGELPTRLAWRSEDAPEPENSNKPDAWKDMVFVGKMPVMVKSKVCHLS 203

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN---------I 207
             + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK           I
Sbjct: 204  REHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQPSPYTYTAEI 261

Query: 208  NASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             +++   +  + S  +    KG+         ++  L      +P+ +V +A+G+ SD++
Sbjct: 262  RSALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPFVKADLPVAIVFRALGVVSDED 321

Query: 259  VVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
            ++  +  D + S +L    P IEE     +  +E AL+++  +  R   G   + R   A
Sbjct: 322  ILNHICYDRKDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGRDKRIRVA 379

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L
Sbjct: 380  RDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPL 439

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  + + M SE+   +   +     +  F+L+  +   +++ GL+ +L+TGN+ D 
Sbjct: 440  LAKLFRGIMRRMHSELANYLRRCVEG---NRHFNLAVGVKPGTLSNGLKYSLATGNWGDQ 496

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +  NG  +
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIE--EYEPLRYPHATKIFVNGTWV 614

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA------D 608
            G H+ PK  AD +   RR   +   VS+    + +   I SD GRV RP+         +
Sbjct: 615  GVHQDPKHLADQVFDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQSKNDPE 674

Query: 609  KGISRIKEHHMKELLDGVRS--------------FDDFLREGLIEYLDVNEENNALIALY 654
             G+ + +    K+L++ +                ++  ++ G +EYLD  EE  ++I + 
Sbjct: 675  TGLEKGQLGLTKDLVNRLAQEQADPPDDPEMKTGWEGLIKAGAVEYLDAEEEETSMICMT 734

Query: 655  EGD----------------------------ATPDT---THIEIEPFTILGVIAGLIPYP 683
              D                              P T   TH EI P  ILG+ A +IP+P
Sbjct: 735  PEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFP 794

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L A
Sbjct: 795  DHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPA 854

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            GQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++   +P  
Sbjct: 855  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEIFEKP-- 912

Query: 804  TGPGAERMQVVHHSNLLLL-----ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
                       H S L +       LD+DG+ APG  +   D+ I K +P++     +  
Sbjct: 913  ----------FHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDLGA 962

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
                  R   +       +G   +VD+V +  + +    +K  +R T+ P++GDKF+SRH
Sbjct: 963  RTTAHQRRDISTPLRSTENG---IVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRH 1019

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K     G     
Sbjct: 1020 GQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEGDA 1079

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            + F +      TV+S+S+ L KHG+   G +++Y+G TG  L+A +F GP YYQ+L+HMV
Sbjct: 1080 TPFTDV-----TVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1134

Query: 1039 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFE 1098
             DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F 
Sbjct: 1135 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1194

Query: 1099 VQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI  R+
Sbjct: 1195 VHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARM 1251


>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1170 (36%), Positives = 639/1170 (54%), Gaps = 71/1170 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKIVRANDRIVSGID----PSI 78
            D ++++  F + +GLV Q +DS+N F+        + +  + R +D+   G++    P  
Sbjct: 38   DIWEVISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFEPGVEMESEPDQ 97

Query: 79   F-LRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTY--AAPILVNIEYVQGSHTEK 131
            + L  +DV +G PS  + G S      L P+ CRL D+TY   A + + I   +    + 
Sbjct: 98   YRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSREDQP 157

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                  ++ +GRIPIML+S RC L  KDE EL RL ECP D GGYFI+ GTEKVL+ QE+
Sbjct: 158  YRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQER 217

Query: 192  LSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEK------GKMYLL--LNQFVK 240
             + N V   T  KG    I + V  S    ++  ++   K      G   LL  + Q  +
Sbjct: 218  QAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDE 277

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEG 297
             IP+ ++ +A+ M SD+E++Q V  D + +A+L     S+E+ + L ++T+++AL ++  
Sbjct: 278  LIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQVFTRDEALWFIGK 337

Query: 298  KVKRSTFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            ++ +    S  N  RE +   ++RD+ L ++ V     R KC ++  M+ R++   L + 
Sbjct: 338  RLGKQD--SRDNLQREAQDL-LMRDL-LPHMGVDCAADRSKCLFIGYMVHRLLLLALGRR 393

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
               D+D++G+KR++++G L++         +  E+ +TV    +  +RS      + +  
Sbjct: 394  EDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFST--NRSGVVSFGRILHS 451

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT G+ R L+TGNF   +    + G++Q L RL++  +L ++ R+      S K + P
Sbjct: 452  RLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISASSKATRP 511

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY--CLGVEDLELL 534
            R L  +QWG +CP +TPEG + GL+KNLALM  V+   +   ++ +      G   + L 
Sbjct: 512  RNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRTTGFHSITL- 570

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
               +L +     V  NG ++G H  P+     +R  RR G++   VSV  + + R + + 
Sbjct: 571  --ADLADVRVARVFVNGTLIGVHADPERLLRELRARRRGGELSNEVSVVRDIRDREIRVF 628

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLD------GVR--SFDDFLREGLIEYLDVNEE 646
            SDGGR  RPL + +K   ++++  + ELL+      G R  S+   +++G +E +D  EE
Sbjct: 629  SDGGRCLRPLFVVEKSRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYVELVDCEEE 688

Query: 647  NNALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            ++ LIA+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG 
Sbjct: 689  DSLLIAMGPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGV 748

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
             A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+
Sbjct: 749  YASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSII 808

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            M++S+++RGF R +  + Y A  +K      +    PDR        +V H        L
Sbjct: 809  MSRSAVERGFFRSVFWRSYKASEEK-KREGQEMFEIPDR--------KVCHVKRADYTKL 859

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D DGL  PG  +   D+ + K  P+    S+   T  T++R      +      E  VVD
Sbjct: 860  DTDGLIKPGIPVIGGDIIVGKTIPIPE--SMREDTTLTNTRILKRDCSISSRTAEKGVVD 917

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            RV L  +K G+   K  IR  + P +GDKF S HGQKG  G   +QED PF+  GI PDL
Sbjct: 918  RVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSPHGQKGTNGIQFRQEDLPFNNDGISPDL 976

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMTV  +IE L GK  V+C  F  G  +  P      VE   + L +   +
Sbjct: 977  IINPHAIPSRMTVAHLIETLAGK--VAC--FKGGEVYATPFCSV-VVEDFGKALTQLNLN 1031

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G + +Y+G TG PL   IF GP YYQ+LKH+  DK+HAR  GP   L RQPTEGRA  
Sbjct: 1032 RYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHE 1091

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC+++YGAS  + ERL   SD + V VC VCG +   +       C  C 
Sbjct: 1092 GGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNVCGTICAADTDQNVYKCQGCD 1151

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N  +I+ + +PYACKLL QEL SM I+PRL
Sbjct: 1152 NDSHIAQVLMPYACKLLFQELMSMAILPRL 1181


>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei TREU927]
 gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei]
 gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei brucei strain 927/4 GUTat10.1]
          Length = 1190

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1168 (36%), Positives = 639/1168 (54%), Gaps = 67/1168 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKIVRANDRIVSGI----DPSI 78
            D ++++  F + +GLV Q +DS+N F+        + +  + R +D+   G+    +P  
Sbjct: 42   DIWEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQ 101

Query: 79   F-LRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTY--AAPILVNIEYVQGSHTEK 131
            + L  +DV +G PS  + G S      L P+ CRL D+TY   A + + I   +    + 
Sbjct: 102  YRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREEQP 161

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                  ++ +GRIPIML+S RC L  KDE EL RL ECP D GGYFI+ GTEKVL+ QE+
Sbjct: 162  YRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQER 221

Query: 192  LSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEK------GKMYLL--LNQFVK 240
             + N V   T  KG    I + V  S    ++  ++   K      G   LL  + Q  +
Sbjct: 222  QAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDE 281

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEG 297
             IP+ V+ +A+ M SD+E++Q V  D +  A+L     S+E+ + L+I+T+++AL ++  
Sbjct: 282  LIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLEIFTRDEALWFIGK 341

Query: 298  KVKRSTFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            ++ +    S  N  RE +   ++RD+ L ++ V     R KC ++  M+ R++   L + 
Sbjct: 342  RLGKQD--SRENLQREAQDL-LMRDL-LPHMGVDCAADRGKCLFIGYMVHRLLLLALGRR 397

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
               D+D++G+KR++++G L++         +  E+ +TV    +  +R       + +  
Sbjct: 398  EDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYST--NRGGVVSFGRILHN 455

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT G+ R L+TGNF   +    + G++Q L RL++  +L ++ R+      S K + P
Sbjct: 456  RLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISASSKATRP 515

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L  +QWG +CP +TPEG + GL+KNLALM  V+   +   ++       +     ++ 
Sbjct: 516  RNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSR-ITGFHSIAL 574

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             +L +     V  NG ++G H  P+     +R  RR G++   VS+  + + R + + SD
Sbjct: 575  SDLADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRDREIRVFSD 634

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLD------GVR--SFDDFLREGLIEYLDVNEENN 648
            GGR  RPL + +K   ++++  + ELL+      G R  S++  +++G +E +D  EE++
Sbjct: 635  GGRCLRPLFVVEKSRIKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYVELIDCEEEDS 694

Query: 649  ALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
             LIA+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG  A
Sbjct: 695  LLIAMVPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYA 754

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+M+
Sbjct: 755  SNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMS 814

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +S+++RGF R +  + Y A  +K      +    PDR        +V H        LD 
Sbjct: 815  RSAVERGFFRSVFWRSYKASEEK-KREGREMFEIPDR--------KVCHVKRADYTKLDT 865

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL  PG  +   D+ + K  P+    S  SP   +D+R      +      E  VVDRV
Sbjct: 866  DGLIKPGMPVIGGDIIVGKTIPVPKTLSEESPV--SDTRILKRDCSISSRAAEKGVVDRV 923

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L  +K G+   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  GI PDLI+
Sbjct: 924  MLTENK-GNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNHDGISPDLII 982

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L GK  V+C  +  G  +  P      VE   + L +   +  
Sbjct: 983  NPHAIPSRMTVAHLIETLAGK--VAC--YKGGEVYATPFCSV-VVEDFGKALTQLKLNRY 1037

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G + +Y+G TG PL   IF GP YYQ+LKH+  DK+HAR  GP   L RQPTEGRA  GG
Sbjct: 1038 GNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGG 1097

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126
            LR GEMERDC+++YGAS  + ERL   SD + V VC +CG +   +       C  C N 
Sbjct: 1098 LRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAADTDQNLYKCQGCDND 1157

Query: 1127 DNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +IS + +PYACKLL QEL SM I+PRL
Sbjct: 1158 SHISQVLMPYACKLLFQELMSMAILPRL 1185


>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1189

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1168 (36%), Positives = 639/1168 (54%), Gaps = 67/1168 (5%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKIVRANDRIVSGI----DPSI 78
            D ++++  F + +GLV Q +DS+N F+        + +  + R +D+   G+    +P  
Sbjct: 41   DIWEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQ 100

Query: 79   F-LRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTY--AAPILVNIEYVQGSHTEK 131
            + L  +DV +G PS  + G S      L P+ CRL D+TY   A + + I   +    + 
Sbjct: 101  YRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREEQP 160

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                  ++ +GRIPIML+S RC L  KDE EL RL ECP D GGYFI+ GTEKVL+ QE+
Sbjct: 161  YRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQER 220

Query: 192  LSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEK------GKMYLL--LNQFVK 240
             + N V   T  KG    I + V  S    ++  ++   K      G   LL  + Q  +
Sbjct: 221  QAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDE 280

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEG 297
             IP+ V+ +A+ M SD+E++Q V  D +  A+L     S+E+ + L+I+T+++AL ++  
Sbjct: 281  LIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLEIFTRDEALWFIGK 340

Query: 298  KVKRSTFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            ++ +    S  N  RE +   ++RD+ L ++ V     R KC ++  M+ R++   L + 
Sbjct: 341  RLGKQD--SRENLQREAQDL-LMRDL-LPHMGVDCAADRGKCLFIGYMVHRLLLLALGRR 396

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
               D+D++G+KR++++G L++         +  E+ +TV    +  +R       + +  
Sbjct: 397  EDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYST--NRGGVVSFGRILHN 454

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT G+ R L+TGNF   +    + G++Q L RL++  +L ++ R+      S K + P
Sbjct: 455  RLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISASSKATRP 514

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L  +QWG +CP +TPEG + GL+KNLALM  V+   +   ++       +     ++ 
Sbjct: 515  RNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSR-ITGFHSIAL 573

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             +L +     V  NG ++G H  P+     +R  RR G++   VS+  + + R + + SD
Sbjct: 574  SDLADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRDREIRVFSD 633

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLD------GVR--SFDDFLREGLIEYLDVNEENN 648
            GGR  RPL + +K   ++++  + ELL+      G R  S++  +++G +E +D  EE++
Sbjct: 634  GGRCLRPLFVVEKSRIKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYVELIDCEEEDS 693

Query: 649  ALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
             LIA+   +   +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG  A
Sbjct: 694  LLIAMVPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYA 753

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+M+
Sbjct: 754  SNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMS 813

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDD 826
            +S+++RGF R +  + Y A  +K      +    PDR        +V H        LD 
Sbjct: 814  RSAVERGFFRSVFWRSYKASEEK-KREGREMFEIPDR--------KVCHVKRADYTKLDT 864

Query: 827  DGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRV 886
            DGL  PG  +   D+ + K  P+    S  SP   +D+R      +      E  VVDRV
Sbjct: 865  DGLIKPGMPVIGGDIIVGKTIPVPKTLSEGSPV--SDTRILKRDCSISSRAAEKGVVDRV 922

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             L  +K G+   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  GI PDLI+
Sbjct: 923  MLTENK-GNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNHDGISPDLII 981

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMTV  +IE L GK  V+C  +  G  +  P      VE   + L +   +  
Sbjct: 982  NPHAIPSRMTVAHLIETLAGK--VAC--YKGGEVYATPFCSV-VVEDFGKALTQLKLNRY 1036

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G + +Y+G TG PL   IF GP YYQ+LKH+  DK+HAR  GP   L RQPTEGRA  GG
Sbjct: 1037 GNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRAHEGG 1096

Query: 1067 LRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126
            LR GEMERDC+++YGAS  + ERL   SD + V VC +CG +   +       C  C N 
Sbjct: 1097 LRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAADTDQNLYKCQGCDND 1156

Query: 1127 DNISSMKLPYACKLLIQELQSMNIVPRL 1154
             +IS + +PYACKLL QEL SM I+PRL
Sbjct: 1157 SHISQVLMPYACKLLFQELMSMAILPRL 1184


>gi|407464206|ref|YP_006775088.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
            AR2]
 gi|407047394|gb|AFS82146.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
            AR2]
          Length = 1115

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1147 (35%), Positives = 626/1147 (54%), Gaps = 56/1147 (4%)

Query: 29   VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDVRI 87
            + ++ ++ + LK  G+ +QHL+SF+ F+  G++ I+    +I +   +    ++   V++
Sbjct: 6    IKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKL 65

Query: 88   GQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
             QP M  +DG    + P   RL +++Y+AP+++    V+    +   +E   V IG +P+
Sbjct: 66   QQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVE----DGKILESRFVHIGDVPV 121

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK-KG 205
            M +S  C+L+     +L   GE P DPGGYFII G+E+V++  E LS N++I+D +   G
Sbjct: 122  MAKSNACILHNFSSQKLIEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVGG 181

Query: 206  NI--NASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
            NI   A V SS    ++K  + M+  G +   +      IP++ +M+A+G+ESD+E+  +
Sbjct: 182  NIVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIASV 241

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
            V         L  S E+    D+ T + A+ Y+    KR   G     +  RA ++L   
Sbjct: 242  VSLVDDIQDELEGSFEKAG--DVPTSKDAIVYIS---KRIAPGMLEEFQIKRAETLLDWG 296

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L ++  H  N + K  ++     +++E  L     DDKD+ GNK ++ +GQ+++ LF  
Sbjct: 297  LLPHLGKHPENRKEKAQFLGEAACKLLELKLGWITPDDKDHYGNKVIKFAGQMLADLFRT 356

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-TVGLERTLSTGNFDVKRFKMHR 441
             F+ ++ +++      L +  +    +     +R  I T  L   ++TGN+   R     
Sbjct: 357  AFRNLVRDMKYQ----LERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRV---- 408

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G+TQ+L R +++ T+ H+ R+     +++     R L  + +G +CP +TPEG  CGLV
Sbjct: 409  -GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLV 467

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLAL   ++ +     ++   Y LG   +     +E    +   V  +G ++G ++   
Sbjct: 468  KNLALSGIISVNVPNEEIVEKLYDLGT--VHFFDAKEDLKKDGTRVFVDGRLIGYYKDGS 525

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQ-----RCVYIASDGGRVCRPLVIADKGISRIKE 616
              A+ +R+LRR  KI   V V  ++ +     R +Y+  + GRV RPL+I    I   K 
Sbjct: 526  ELAESLRELRRNSKIHPHVGVSFHKSEIEGSTRRLYVNCNAGRVLRPLII----IKDNKP 581

Query: 617  HHMKELLDGVR----SFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
                ELLD +     S+ D LR G++E +D NEE N  + L E DA    TH+E+ P  I
Sbjct: 582  LLTSELLDKISKKLLSWTDLLRMGVLEMIDANEEENCYVTLDEKDAK-KHTHLEVFPPAI 640

Query: 673  LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
            LG  A +IPYP HNQSPRNTY+ AM KQ++G              + ++YPQ P++ T+ 
Sbjct: 641  LGAGASIIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKA 700

Query: 733  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
            ++L+G +   AGQN  VAV+ + GY+IEDAIV++K+S+DRG GR    + Y A  ++Y  
Sbjct: 701  MKLLGLEDRPAGQNCIVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPG 760

Query: 793  STSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETR 852
               D    P+     AE     +       +L+DDG+ A    +K  D+ I K SP    
Sbjct: 761  GMRDSFEIPN-----AEDNIRGYKGERAYRLLEDDGVVASEAPVKGGDILIGKTSPPR-- 813

Query: 853  GSIMSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
               M    + +S     R T  G    ET V+D V +     G    K   R  R PE+G
Sbjct: 814  --FMEEYREFESSGPYRRDTSIGVRPSETGVIDTVVMTQSNEGGKMYKIRARDMRIPEIG 871

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKGV G + + ED P++  G+ PD+++NPH FPSRMTVG M+E + GKA   
Sbjct: 872  DKFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINPHAFPSRMTVGMMMESICGKAAAL 931

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G+   GSAF       + +  + E +  HGF Y+GK+ +Y G TG      +F+G +YY
Sbjct: 932  RGKRFDGSAF-----VGEKMPEVKEVMDAHGFEYSGKETMYDGRTGKSFPVDVFIGVVYY 986

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            QKL HMV DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +RL+
Sbjct: 987  QKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLL 1046

Query: 1092 VSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIV 1151
              SD  ++ VC  CGL+ Y++ K +  +C  C +   +SS+ + YA KLL+QE+QS+N+ 
Sbjct: 1047 DESDKSDIFVCERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVA 1106

Query: 1152 PRLKLAE 1158
            PRL + E
Sbjct: 1107 PRLLIKE 1113


>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1278

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1262 (33%), Positives = 647/1262 (51%), Gaps = 163/1262 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-----------RANDRIVSGIDPSI 78
            D + ++  +   +GLV Q +DS+N F  T I+ I+              D   SG    +
Sbjct: 33   DCWTVISSYFDEKGLVSQQIDSYNEFTTTTIQSIIDEYHTLTLDQQNPQDSGASGRPLRM 92

Query: 79   ---FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI------------- 121
                L F  + + QP++   DG +  L P+ CR  ++TYA P+ V +             
Sbjct: 93   RRYTLTFGHILVTQPTIKETDGQANTLVPYECRDRNLTYACPLWVKLTRKVEAAVEVDIP 152

Query: 122  ---------EYVQGSHTEKTT------------MEKND-----VVIGRIPIMLRSCRCVL 155
                     E    ++   TT            +EKN+     V IG+IPIML+S  C L
Sbjct: 153  EDKLTEEQKEEALATNEHPTTVVWVPEPVEEHSIEKNENMRDMVFIGKIPIMLKSRICYL 212

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN--------- 206
              + E+EL  L ECP D GGYFII G+EKVL+ QE+ + N  I+   KK           
Sbjct: 213  RSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAAN--IVQVFKKAQPHKYLYQAE 270

Query: 207  INASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I +++   +  + S  +    KG          +++ L     ++P+ +V +A+G+ SD+
Sbjct: 271  IRSALEKGSRLISSLVMSLTSKGDSSRGAFGQTLHVTLPYVNGELPLAIVFRALGVVSDE 330

Query: 258  EVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            +++  +     D +   +L PSIEE     I  +E AL+++  +V R   G   N+R  R
Sbjct: 331  DILNHIVLDKGDVQMLEMLRPSIEEA--FCIQDREVALDFIGKRVGRD--GQHANNRHQR 386

Query: 315  ---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A  IL+   L +V         K F++  M+ ++++  L +  +DD+D+ G KRL+L
Sbjct: 387  LRMARDILQKETLPHVSQEEGQETRKAFFLGYMVHKILQCALGRRDVDDRDHFGKKRLDL 446

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431
            +G L++ LF +L + M +++   +   +     S  FDL+  +  ++++ GL+ +L+TGN
Sbjct: 447  AGPLLAKLFRNLVRRMSNDMMNHLKRCIDS---SRNFDLTSALRPNTLSNGLKYSLATGN 503

Query: 432  F-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            + D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP 
Sbjct: 504  WGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 563

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG+ACGLVKNL+LM  V+      P+       G+E LE     +    +   +  N
Sbjct: 564  ETPEGQACGLVKNLSLMCMVSVGTPASPIEHFLVSRGMEVLEEFEPSDGMAVSKIFI--N 621

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL------ 604
            G  +G  R     AD +  LRR   +   VS+  + ++    I SD GRV RPL      
Sbjct: 622  GTWVGVSRNIDELADAVADLRRKNTVDAEVSLIHDVREGEFRILSDAGRVMRPLFVVNQK 681

Query: 605  ------------VIADKGISRIKEHHMKELLDGVRSF---DDFLREGLIEYLDVNEENNA 649
                        V+  + I+R+ E    +L  G   F   +    +G+I+ +D  +E  A
Sbjct: 682  DDEMTGTKKSSLVLTKEHIARLHEDKDNQLSQGDEGFYGWEGLKSDGVIDLMDAEQEETA 741

Query: 650  LIALYEGD------------------------------------ATPDTTHIEIEPFTIL 673
            +I +   D                                     T   TH EI P  +L
Sbjct: 742  MICMTPEDLDIFRYLKETGINLASEDDIITEHNINKRLRTKINPTTHTYTHCEIHPSMLL 801

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL  TR++
Sbjct: 802  GICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYNKRMDTMANILYYPQKPLGITRSM 861

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +
Sbjct: 862  EYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDAEKRVGIN 921

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
              ++  +P R      R++   +       L+DDG+ APG  +   D+ I K +P++   
Sbjct: 922  LVEKFEKPYRQ--DTLRLKQGTYDK-----LEDDGIVAPGTRVSGEDIIIGKTAPIQPDN 974

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
              +   GQ   ++     +      E+ +VD+V L ++++G   +K  +R T+ P++GDK
Sbjct: 975  QEL---GQRTVQHVKRDASTPLRSTESGIVDQVILTTNQDGLKYVKVRVRTTKIPQIGDK 1031

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKG  G   + ED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G
Sbjct: 1032 FASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVATIKG 1091

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                 + F E      TV+S+S+ L ++ +   G +++Y G TG  L+A +F GP YYQ+
Sbjct: 1092 FEGDATPFTEV-----TVDSVSKLLREYDYQSRGFEVLYHGHTGRKLRAQVFFGPTYYQR 1146

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   
Sbjct: 1147 LRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEV 1206

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVP 1152
            SD F V +C +CGL+       K    C  CKN   I+ + +PYA KLL QEL +MNI  
Sbjct: 1207 SDAFRVHICEICGLMTPIADLTKGTFECRPCKNKTKIAQVHIPYAAKLLFQELAAMNIAT 1266

Query: 1153 RL 1154
            R+
Sbjct: 1267 RM 1268


>gi|118576748|ref|YP_876491.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
            symbiosum A]
 gi|118195269|gb|ABK78187.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
            symbiosum A]
          Length = 1115

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1142 (34%), Positives = 617/1142 (54%), Gaps = 50/1142 (4%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDVRIGQ 89
            ++ ++ + L+  G+ +QHL+SF+ F+  G++ I+    +I +   +    ++   V++ +
Sbjct: 8    RWPVIQDILRREGIARQHLNSFDEFLERGLQSIIDEQGQIEIENAEYPYKIQLGKVKLQK 67

Query: 90   PSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P M  +DG    + P   RL +++Y+AP+++    V+    +  T+E   V IG IP M+
Sbjct: 68   PRMMELDGSITYITPAEGRLRNVSYSAPVMMEASVVE----DGKTLESKFVHIGDIPTMI 123

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN-- 206
            +S  CVL+   + +L   GE P DPGGYFII G+E+V++  E LS N++I+D +  G   
Sbjct: 124  KSSACVLHNLPDQKLIEQGEDPNDPGGYFIINGSERVVVGLEDLSYNKIIVDKETVGGNP 183

Query: 207  -INASVTSSTETVKSK-TVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A V SS    ++K  +I    G + + +      IP++ +MKA+G+ESD+E+     
Sbjct: 184  VYKAKVYSSIVGYRAKLELIMKNDGLIVVRIPGSPVDIPVVTLMKALGLESDREIASSAS 243

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
             +      L  S E+    ++ T + A+ Y+    KR   G     +  RA ++L    L
Sbjct: 244  LNDDIQNELEGSFEKAG--EVKTSKDAIVYIS---KRIAPGMLEEFQIKRAETLLDWSLL 298

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++  H  N + K  ++     +++E  L     DDKD+ GNK ++ +GQ+++ LF   F
Sbjct: 299  PHLGKHPENRKEKAQFLGEATCKLLELKLVWIPADDKDHYGNKVIKFAGQMLADLFRTAF 358

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-TVGLERTLSTGNFDVKRFKMHRKG 443
            + ++ +++      L +  +          +R  I T  L   ++TGN+   R      G
Sbjct: 359  RNLVRDMKYQ----LERSGQKRGIHAVAAAIRPGIVTDKLNNAIATGNWGRGRV-----G 409

Query: 444  MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKN 503
            +TQ+L R +++ T+ H+ RV     +++     R L  + +G +CP +TPEG  CGLVKN
Sbjct: 410  VTQLLDRTNYLSTISHLRRVQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKN 469

Query: 504  LALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCF 563
            LAL   ++       +    + +G   +     +E        +  +G ++G ++     
Sbjct: 470  LALSAIISVHVPSQEITEKLFDMGT--VHFTDAKEDARATGTRIFVDGRLIGYYKDGGGL 527

Query: 564  ADVMRKLRRAGKIGEFVSVFVNE-----KQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            AD +R LRR+ KI   VS+  N        R +Y+    GRV RP++I   G   + +  
Sbjct: 528  ADSLRDLRRSSKIHPHVSISFNRPAEDGATRRLYVNCSAGRVLRPMIIIKDGKPLLTQDL 587

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            + ++   + S++D LR G+IE +D NEE N  + L E +A    TH+EI P  ILG  A 
Sbjct: 588  LDKISSKLLSWNDLLRMGVIELIDANEEENCYVTLDEKEAK-GHTHLEIFPSAILGAGAS 646

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            +IPYP HNQSPRNTY+ AM KQ++G              + ++YPQ P++ TR + L+G 
Sbjct: 647  IIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQTPIVNTRAMGLLGL 706

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            +   AGQN  VAV+ + GY+IEDAIV++KSS+DRG  R    + Y A  ++Y        
Sbjct: 707  EDRPAGQNCVVAVLPFDGYNIEDAIVLSKSSVDRGLARTFFYRIYDAEAKQYPGG----- 761

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP--LETRGSIM 856
            +R +   PGAE     +       +L+DDG+ A    +   D+ I K SP          
Sbjct: 762  MRDNFEIPGAEDNIRGYKGEKSYRLLEDDGVIASESTVLGGDILIGKTSPPRFMEEYKEF 821

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
             P+G     YR        P  ET VVD V +     G    K  +R  R PE+GDKF++
Sbjct: 822  EPSGP----YRRDTSIGVRPS-ETGVVDTVVMTQSNEGGKMYKIRVRDMRVPEIGDKFAA 876

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKGV G + + ED P++  G+ PD+++NPH FPSRMTVG  +E + GKA    G   
Sbjct: 877  RHGQKGVLGILAKNEDLPYTAEGVTPDVLINPHAFPSRMTVGMFMESITGKAAALRGTQF 936

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
             GSAF       + +E + E +   GF Y+GK+++Y G TG      +F+G +YYQKL H
Sbjct: 937  DGSAF-----VGEKMEEVREVMDTAGFKYSGKEIMYDGRTGKAFPVEVFIGVVYYQKLHH 991

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDP 1096
            MV DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +RL+  SD 
Sbjct: 992  MVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDK 1051

Query: 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             ++ VC  CGL+ Y++ K +  +C  C +   +SS+ + YA KLL+QE+QS+N+ PRL +
Sbjct: 1052 SDIYVCERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRLLI 1111

Query: 1157 AE 1158
             E
Sbjct: 1112 KE 1113


>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
          Length = 1261

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/1264 (33%), Positives = 650/1264 (51%), Gaps = 175/1264 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV Q  DSF+ F  T I+ +V     I        S    +I LR 
Sbjct: 24   DCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGRTIALRR 83

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  V + +P+++  DG    L P+ CR  ++TYA+P+ + I               
Sbjct: 84   YEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSAAVEREVPLH 143

Query: 122  --------EYVQ-GSHTEKTTME----------------KNDVVIGRIPIMLRSCRCVLY 156
                    EY + G H  K   E                K+ V +G++PIM++S  C L 
Sbjct: 144  EMDDAQQEEYARTGEHPTKLEWEEEENGEDDNVGKSDDWKDMVFVGKLPIMVKSKICHLS 203

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTE 216
             + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK     S  + T 
Sbjct: 204  REQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQ--PSAYTYTA 259

Query: 217  TVKSKTVIQMEKGK-----MYLLLN------------------QFVKK-IPIMVVMKAMG 252
             ++S     +EKG      M L L                    FVK  +P+ +V +A+G
Sbjct: 260  EIRSA----LEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRALG 315

Query: 253  MESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            + SD++++  +  D   S +L    P IEE     +  +E AL+++  +  R   G    
Sbjct: 316  VVSDEDILNHICYDRNDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGRE 373

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             R   A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL
Sbjct: 374  KRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRL 433

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            +L+G L++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+T
Sbjct: 434  DLAGPLLAKLFRGIMRRMNTELANYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLAT 490

Query: 430  GNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            GN+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++C
Sbjct: 491  GNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 550

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  + 
Sbjct: 551  PAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE--EYEPLRYPHATKIF 608

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA- 607
             NG+ +G H+ PK   + +   RR   +   VS+    + +   I SD GRV RP+    
Sbjct: 609  VNGVWVGVHQDPKHLVNQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQ 668

Query: 608  --DKGISRIKEHHM---KELLDGVRS--------------FDDFLREGLIEYLDVNEENN 648
              D   + I + H+   KEL++ +                ++  +R G +EYLD  EE  
Sbjct: 669  QEDDPETGINKGHLVLTKELVNRLAKEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEET 728

Query: 649  ALIALYEGD----------------------------ATPDT---THIEIEPFTILGVIA 677
            ++I +   D                              P T   TH EI P  ILG+ A
Sbjct: 729  SMICMTPEDLELYRLQKAGISTDEDMGDDPNKRLKTKTNPTTHMYTHCEIHPSMILGICA 788

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + 
Sbjct: 789  SIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSMEFLK 848

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++ 
Sbjct: 849  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEV 908

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLI------LDDDGLAAPGEIIKPNDVYINKESPLET 851
              +P              H N L +       LD+DG+ APG  +   D+ I K +P++ 
Sbjct: 909  FEKP-------------FHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDA 955

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
                +  T  T  + R      +    E  +VD V +  + +    +K  +R T+ P++G
Sbjct: 956  ETQDLG-TRTTMHQRRDISTPLRST--ENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIG 1012

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K    
Sbjct: 1013 DKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 1072

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G     + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YY
Sbjct: 1073 EGMEGDATPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYY 1127

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL 
Sbjct: 1128 QRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLF 1187

Query: 1092 VSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
              SD F V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI
Sbjct: 1188 EVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNI 1247

Query: 1151 VPRL 1154
              R+
Sbjct: 1248 AARM 1251


>gi|167044136|gb|ABZ08819.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
            crenarchaeote HF4000_APKG5C13]
          Length = 1114

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1148 (35%), Positives = 630/1148 (54%), Gaps = 55/1148 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDV 85
            SV   + ++ + L   G+ +QHL SFN F+  G+++I+   D I +   +    ++   +
Sbjct: 4    SVNKHWAIIQDILSREGIARQHLTSFNEFLTKGLQEIINEIDHIDIENAEYPYRIKLGRI 63

Query: 86   RIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
            +  QP M  +DG    + P   RL +++Y AP+++    ++    +  T+E   + IG I
Sbjct: 64   QFKQPRMMELDGSVTHITPAEARLRNVSYVAPLMLEASVIE----DGKTLENRFLHIGDI 119

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            PIM++S  C+L    E +L    E P DPGGYFII G+E+V++  E LS N++I+D DK 
Sbjct: 120  PIMVKSEGCILRNFSEQKLIDHAEDPYDPGGYFIINGSERVIVGLEDLSYNKIIVDADKI 179

Query: 205  GN---INASVTSSTETVKSK-TVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            G      A + SS    ++K  ++  E G +   +      IPI+ +++A+G+ESD+E+ 
Sbjct: 180  GGKKVFKAKIYSSIVGYRAKLELVLKEDGLIVARIPGSPVDIPIITLVRALGLESDKEIA 239

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
              +  + +    L  S E+    +I T + A+EY+    KR   G     +  RA ++L 
Sbjct: 240  SAISLNDKIQNELEGSFEKT---EISTPKDAIEYIS---KRIAPGMLEEFQIKRAETLLD 293

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++     N + K  ++     +++E  L     DDKD+ GNK ++ +GQ+++ LF
Sbjct: 294  WGLLPHLGKQPENRKEKIQFLGEAACKLLELKLGWIQPDDKDHYGNKVVKFAGQMLADLF 353

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
               F+ ++ +++  ++    K   ++   +S  I    I+  L   ++TGN+   R    
Sbjct: 354  RTAFRNLVRDMKYQLERSGQKRGINA---VSAAIRPGIISDKLNNAIATGNWGRGRV--- 407

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
              G+TQ+L R +++ T+ H+ RV     +++     R L  + +G +CP +TPEG  CGL
Sbjct: 408  --GVTQLLDRTNYLSTISHLRRVQSPLSRTQPNFEARDLHSTHFGRICPSETPEGSNCGL 465

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLAL   ++       +I   Y +G E    +  ++    +   V  +G ++G H+  
Sbjct: 466  VKNLALSAIISVSVPSEEIIEKMYEIGTEYFTDV--KDSVKKDGTRVFVDGKLIGYHKDG 523

Query: 561  KCFADVMRKLRRAGKIGEFV--SVFVNEKQ---RCVYIASDGGRVCRPLVIADKGISRIK 615
            K  A  +R+LRR+ KI   +  S+ + E++   + +Y+  + GRV R L++   G S + 
Sbjct: 524  KKLASSLRELRRSSKIHPHIGISIHIPEQEGATKRLYVNCNAGRVLRSLIVVKDGKSTLT 583

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
               + ++L  + S++D +R G+IE +D NEE N  I  ++       TH EI P  ILG 
Sbjct: 584  PDLLDKILKKLVSWNDLVRMGVIELIDANEEENCFIT-FDDKHVKKHTHTEIFPSAILGA 642

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL----LVYPQRPLLTTR 731
             A +IPYP HNQSPRNTY+ AM KQ++G   F+    M++  Y+    ++YPQ P++TTR
Sbjct: 643  GASIIPYPEHNQSPRNTYESAMAKQSLG---FSTPM-MNTSTYVRQHTMLYPQTPIVTTR 698

Query: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
             + L+G +K  AGQN  VAV+ + GY+IEDAIV++KS+++RG GR +  + Y A +++Y 
Sbjct: 699  AMGLLGLEKRPAGQNCVVAVLPFDGYNIEDAIVLSKSAIERGLGRTLFYRIYEAESKQYP 758

Query: 792  NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLET 851
                   +R +   P A+     +       +L+DDG+ A    +   D+ I K SP   
Sbjct: 759  GG-----MRDNFEIPNADDNLRGYKGEKSYRLLEDDGIVASESRVSGGDILIGKTSPPRF 813

Query: 852  RGSIMSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                    G    R    R T  G    ET VVD + L     G    K  IR  R PE+
Sbjct: 814  MEEYHELEGSGPYR----RDTSIGVRPSETGVVDTIILTQSAEGGKMFKVRIRDMRLPEI 869

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKGV G + + ED P++  GI PD+++NPH FPSRMTVG M+E + GKA  
Sbjct: 870  GDKFASRHGQKGVVGLLAKAEDLPYTADGISPDVLINPHAFPSRMTVGMMLESITGKAAA 929

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              GR    SAF       + V+ +   L   GF Y+GK+++Y G TG      +F+G +Y
Sbjct: 930  MRGRKVDASAF-----VGEKVDEVKSVLEDAGFKYSGKEIMYDGRTGKQFPVEVFIGVVY 984

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQKL HMV DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDC+IAYGASM++ +RL
Sbjct: 985  YQKLHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCIIAYGASMILKDRL 1044

Query: 1091 MVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
            +  SD  ++ VC  CGL+ Y++ K +   C  C     +SS+ + YA KLL+QE+  +NI
Sbjct: 1045 LDESDKSDIFVCERCGLVAYHDIKQRRFYCRVCDKKGKVSSVSVAYAFKLLLQEMSCLNI 1104

Query: 1151 VPRLKLAE 1158
             PRL + E
Sbjct: 1105 APRLLIKE 1112


>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
          Length = 1307

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1208 (34%), Positives = 633/1208 (52%), Gaps = 159/1208 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++            IDP +  
Sbjct: 126  DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDPVVLR 185

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-------------- 121
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 186  RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 245

Query: 122  --EYVQGS--------------HTEKTTM-----EKNDVVIGRIPIMLRSCRCVLYGKDE 160
              +  QG               H E   +     E+ +V IGR+PIML+S  C+L   +E
Sbjct: 246  RDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 305

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTS 213
              L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V  
Sbjct: 306  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 365

Query: 214  STETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  + 
Sbjct: 366  GSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 425

Query: 265  RDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AF 316
             D   +    +L P IEE     I  +E AL+++  +      GS P   + E R   A 
Sbjct: 426  YDRNDTPMLEMLKPCIEE--GFVIQDREVALDFISKR------GSSPTSMNHEKRVRYAR 477

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L+
Sbjct: 478  DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 537

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  LF  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K
Sbjct: 538  ANLFRILFMRVTKDLYKYVQRCVET---NRQLYLNIGVKASTLSSGLKYALATGNWGEQK 594

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 595  KAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 654

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM  +T      P+I       +E LE    E   +PN+  V  NG+ +G
Sbjct: 655  QACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNATKVFVNGVWVG 712

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------ 609
             HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + +       
Sbjct: 713  VHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 772

Query: 610  --GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
               +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I +
Sbjct: 773  CGSLVLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 832

Query: 654  YEGD-------------------------------ATPDTTHIEIEPFTILGVIAGLIPY 682
               D                                T   TH EI P  ILG+ A +IP+
Sbjct: 833  TPEDLETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPF 892

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 893  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 952

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 953  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 1012

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R    ++ +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 1013 R----SDTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEEL---GQR 1062

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 1063 TKQHTKIDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQK 1121

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R   G A 
Sbjct: 1122 GTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA- 1178

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV D
Sbjct: 1179 ---TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDD 1235

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1236 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1295

Query: 1101 VCRVCGLL 1108
            +C +CGL+
Sbjct: 1296 ICDICGLM 1303


>gi|161527855|ref|YP_001581681.1| DNA-directed RNA polymerase subunit B [Nitrosopumilus maritimus SCM1]
 gi|160339156|gb|ABX12243.1| RNA polymerase Rpb2 domain 6 [Nitrosopumilus maritimus SCM1]
          Length = 1115

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/1145 (34%), Positives = 626/1145 (54%), Gaps = 48/1145 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDV 85
            S   ++ ++ + LK  G+ +QHL+SF+ F+  G++ I+    +I +   +    ++   V
Sbjct: 4    SSTKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKV 63

Query: 86   RIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
            ++ QP M  +DG    + P   RL +++Y+AP+++    V+    +   +E   V IG +
Sbjct: 64   KLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVE----DGKILESRFVHIGDV 119

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
            P+M +S  C+L+     +L   GE P DPGGYFII G+E+V++  E LS N++I+D +  
Sbjct: 120  PVMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETV 179

Query: 204  KGNI--NASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
             GNI   A V SS    ++K  + M+  G +   +      IP++ +M+A+G+ESD+E+ 
Sbjct: 180  GGNIVHKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIA 239

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
              V         L  S E+    D+ T + A+ Y+    KR   G     +  RA ++L 
Sbjct: 240  AAVSLVDELQDELEASFEKAG--DVPTAKDAIVYIS---KRIAPGMLEEFQIKRAETLLD 294

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++  H  N + K  ++     +++E  L+    DDKD+ GNK ++ +GQ+++ LF
Sbjct: 295  WGLLPHLGKHPENRKEKAQFLGEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLF 354

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-TVGLERTLSTGNFDVKRFKM 439
               F+ ++ +++      L +  +    +     +R  I T  L   ++TGN+   R   
Sbjct: 355  RTAFRNLVRDMKYQ----LERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRV-- 408

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
               G+TQ+L R +++ T+ H+ R+     +++     R L  + +G +CP +TPEG  CG
Sbjct: 409  ---GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCG 465

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLAL   ++ +     ++   Y LG   +     +E    +   +  +G ++G ++ 
Sbjct: 466  LVKNLALSGIISVNVPSEEIVEKLYDLGT--VHFFDAKEDLKKDGTRIFVDGRLIGYYKD 523

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQ-----RCVYIASDGGRVCRPLVIADKGISRI 614
             +  A+ +R LRR  KI   V V  ++ +     R +Y+  + GRV RPL+I       +
Sbjct: 524  GEQLAESLRDLRRNSKIHPHVGVSFHKSEIEGSTRRLYVNCNAGRVLRPLIIIKDNKPLL 583

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
                + ++   + S+ D LR G++E +D NEE N  + L E D T   TH+E+ P  ILG
Sbjct: 584  TADLLDKISKKLISWTDLLRMGVLEMIDANEEENCYVTLDEKD-TKKHTHLEVFPPAILG 642

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
              A +IPYP HNQSPRNTY+ AM KQ++G              + ++YPQ P++ T+ ++
Sbjct: 643  AGASIIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMK 702

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+G +   AGQN  VAV+ + GY+IEDAIV++K+S+DRG GR    + Y A  ++Y    
Sbjct: 703  LLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGM 762

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             D    P+     AE     +       +L++DG+ A    +K  D+ I K SP      
Sbjct: 763  RDAFEIPN-----AEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSP----PR 813

Query: 855  IMSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
             M    + +S     R T  G    ET VVD V +     G    K   R  R PE+GDK
Sbjct: 814  FMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRARDMRIPEIGDK 873

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKGV G + + ED P++  G+ PD+++NPH FPSRMTVG M+E + GK+    G
Sbjct: 874  FASRHGQKGVLGILAKAEDLPYTASGMSPDVLINPHAFPSRMTVGMMMESICGKSAALRG 933

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
            +   GSAF       + ++ + E +  HGF Y+GK+++Y G TG      +F+G +YYQK
Sbjct: 934  KRFDGSAF-----VGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQK 988

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +RL+  
Sbjct: 989  LHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDE 1048

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD  ++ VC  CGL+ Y++ K +  +C  C +   +SS+ + YA KLL+QE+QS+N+ PR
Sbjct: 1049 SDKSDIFVCERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPR 1108

Query: 1154 LKLAE 1158
            L + E
Sbjct: 1109 LLIKE 1113


>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
 gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
          Length = 1104

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/1132 (35%), Positives = 609/1132 (53%), Gaps = 114/1132 (10%)

Query: 7    EGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA 66
            E    DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV  
Sbjct: 12   EEDETDEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 63

Query: 67   NDRI-----------VSGIDPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYA 114
            + +I            + + P   L F+ + + +P+    DG    + P+  RL ++TY+
Sbjct: 64   SPQIDLQAEAQHLTMEAEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYS 123

Query: 115  APILVNI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDP 173
            AP+ V+I + +     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDP
Sbjct: 124  APLYVDITKTIVKDGEERIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDP 183

Query: 174  GGYFIIKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQME 227
            GGYFII G+EKVL+ QE+++ N V +   K       G I + +  S+    +  V  + 
Sbjct: 184  GGYFIINGSEKVLIAQEKMATNSVYVFAKKDSKYAFTGEIRSCLEHSSRPTSTLWVHMLA 243

Query: 228  KG-----------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALL 273
            +G           ++  +L    ++IPI++V +A+G  SD+++++ +     DP    +L
Sbjct: 244  RGGTGQRKSAIGQRIVAVLPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEML 303

Query: 274  LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNN 333
             PS++E     I  Q  AL ++  +  +   G   + R   A  IL+   L +V + +  
Sbjct: 304  KPSLDEA--FVIQEQNVALNFIGARGAKP--GVTKDKRIKYAREILQKEMLPHVGISDYC 359

Query: 334  FRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV-- 391
               K +++  ++ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  LFK +  EV  
Sbjct: 360  ETKKAYFLGYIVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAYLFRGLFKNLTKEVRI 419

Query: 392  --QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVL 448
              QK +D       R   F+L   I    IT GL+ +L+TGN+ D K+    R G++QVL
Sbjct: 420  YAQKFID-------RGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVL 472

Query: 449  ARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMT 508
             RL+F  TL H+ R++    +  K++ PR L  S WGM+CP +TPEG+A GLVKNLALM 
Sbjct: 473  NRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMA 532

Query: 509  HVTTDEEEGPLISLCYCLGV--------------EDLELLSGEELHN------PNSFLVI 548
            +++   + G  + L   L +              E LE  S E L         N+  + 
Sbjct: 533  YISMVHDNGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVAPSAIANATKIF 592

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
             NG  +G HR P+   + ++KLRR   I    VS+  + ++R + I +D GR+CRPL+I 
Sbjct: 593  VNGCWVGVHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIV 652

Query: 608  DKGISRIKEHH---MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT-- 662
            +K    +K+HH   +KE      S+ D +  G++EY+D  EE   ++A+     TPD   
Sbjct: 653  EKQKLLLKKHHVDMLKEREYNNYSWQDLVAGGVVEYIDTLEEETVMLAM-----TPDDLQ 707

Query: 663  ----------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                      TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 708  DKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVR 767

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MD+L ++L YPQ+PL+TTR++E + + +L AG NA VA+ SY+GY+ ED+++MN S++DR
Sbjct: 768  MDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDR 827

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R +  + Y     K      +   +P R        +V    N +   LDDDG+ AP
Sbjct: 828  GLFRSVFYRSYKESESKKGLDQEEIFEKPTRD-------EVTGMRNAIYDKLDDDGIIAP 880

Query: 833  GEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            G  +   DV I K   L E    + S T +   R  S          ET +VD+V +  +
Sbjct: 881  GVRVSGEDVIIGKTVTLPENEDELESTTKRFTKRDSSTFLR----SSETGIVDQVMVSIN 936

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
            + G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+I+NPH  
Sbjct: 937  QEGYKFCKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTAEGISPDIIINPHAV 996

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+   G +++
Sbjct: 997  PSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLHEYGYHLRGNEVV 1052

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
            Y+G TG  L   +F+GP YYQ+LKHMV DK+H+R  GP   L RQP EGR+R
Sbjct: 1053 YNGFTGRKLSTQLFIGPTYYQRLKHMVDDKIHSRARGPVQNLNRQPMEGRSR 1104


>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
          Length = 1262

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1265 (33%), Positives = 646/1265 (51%), Gaps = 176/1265 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV Q  DSF+ F  T I+ +V     I        S    +I LR 
Sbjct: 24   DCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGRTIALRR 83

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
                F  V + +P+++  DG    L P+ CR  ++TYA+P+ + I               
Sbjct: 84   YEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKLSAAVEKEIPLH 143

Query: 122  --------EYVQGSHTE------------------KTTMEKNDVVIGRIPIMLRSCRCVL 155
                    EY +                       K+   K+ V +G++PIM++S  C L
Sbjct: 144  EMDDAQQEEYARTGEAPTKLEWEEEEAGEDDHNIGKSEDWKDMVFVGKLPIMVKSKICHL 203

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSST 215
              + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK     S  + T
Sbjct: 204  SRETDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQ--PSAYTYT 259

Query: 216  ETVKSKTVIQMEKGK-----MYLLLN------------------QFVKK-IPIMVVMKAM 251
              ++S     +EKG      M L L                    FVK  +P+ +V +A+
Sbjct: 260  AEIRSA----LEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRAL 315

Query: 252  GMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            G+ SD++++  +  D   S +L    P IEE     +  +E AL+++  +  R   G   
Sbjct: 316  GVVSDEDILNHICYDRNDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGR 373

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KR
Sbjct: 374  EKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKR 433

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            L+L+G L++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+
Sbjct: 434  LDLAGPLLAKLFRGIMRRMNTELANYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLA 490

Query: 429  TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            TGN+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++
Sbjct: 491  TGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLV 550

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP +TPEG+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  +
Sbjct: 551  CPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE--EYEPLRYPHATKI 608

Query: 548  IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI- 606
              NG+ +G H+ PK     +   RR   +   VS+    + +   I SD GRV RP+   
Sbjct: 609  FVNGVWVGIHQDPKHLVQQVVDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTV 668

Query: 607  -----ADKGISRIKEHHMKELLDGVRS--------------FDDFLREGLIEYLDVNEEN 647
                 +D GI +      K+L++ +                ++  +R G +EYLD  EE 
Sbjct: 669  QQDEESDTGIPKGHLVLTKDLVNKLAQEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEE 728

Query: 648  NALIALYEGD----------------------------ATPDT---THIEIEPFTILGVI 676
             A+I +   D                              P T   TH EI P  ILG+ 
Sbjct: 729  TAMICMTPEDLELYRAQKAGIATEEDVGDDPNKRLKTRTNPTTHMYTHCEIHPSMILGIC 788

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E +
Sbjct: 789  ASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSMEFL 848

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++
Sbjct: 849  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTE 908

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLI------LDDDGLAAPGEIIKPNDVYINKESPLE 850
               +P              H N L +       LD+DG+ APG  +   D+ I K +P++
Sbjct: 909  VFEKP-------------FHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPID 955

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                 +  T  T  + R      +    E  +VD V +  + +    +K  +R T+ P++
Sbjct: 956  ADTQDLG-TRTTMHQRRDISTPLRST--ENGIVDSVIVTVNADNVKYVKVRVRTTKIPQI 1012

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K   
Sbjct: 1013 GDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVST 1072

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G     + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP Y
Sbjct: 1073 LEGMEGDATPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTY 1127

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL
Sbjct: 1128 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERL 1187

Query: 1091 MVSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
               SD F V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMN
Sbjct: 1188 FEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1247

Query: 1150 IVPRL 1154
            I  R+
Sbjct: 1248 IAARM 1252


>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Loxodonta africana]
          Length = 1010

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/990 (38%), Positives = 572/990 (57%), Gaps = 60/990 (6%)

Query: 191  QLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMK 249
            Q+S  R++ D     ++ A    ++  V+     +   G+  +    ++K+ +PI++V +
Sbjct: 52   QMSVQRIVEDAPPI-DLQAEAQHASGEVEEPGAKKSAIGQRIVATLPYIKQEVPIIIVFR 110

Query: 250  AMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
            A+G  SD+++++ +     DP    ++ PS++E     I  Q  AL ++  +  +   G 
Sbjct: 111  ALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGSRGAKP--GV 166

Query: 307  PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
                R   A  +L+   L +V V +     K +++  M+ R++ A L +  +DD+D+ GN
Sbjct: 167  TKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGN 226

Query: 367  KRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVG 422
            KRL+L+G L++ LF  +FK ++ EV    QK +D       R   F+L   I    I+ G
Sbjct: 227  KRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFNLELAIKTRIISDG 279

Query: 423  LERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481
            L+ +L+TGN+ D K+    R G++QVL RL+F  TL H+ R++    +  K++ PR L  
Sbjct: 280  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 339

Query: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541
            + WGM+CP +TPEG A GLVKNLALM +++   +  P++       +E+LE +S   + +
Sbjct: 340  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 399

Query: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASDGGRV 600
                 V  NG  +G H+ P+   + +RKLRR   I    VS+  + ++R + I +D GR+
Sbjct: 400  ATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 457

Query: 601  CRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            CRPL+I +K    +K+ H+ +L +      S+ D +  G++EY+D  EE   ++A+    
Sbjct: 458  CRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM---- 513

Query: 658  ATPDT------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
             TPD             TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 514  -TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 572

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ VA+ SY+GY+ ED+++M
Sbjct: 573  ITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 632

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N+S++DRGF R +  + Y     K      +   +P R     E  Q + H+  +   LD
Sbjct: 633  NRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTR-----ETCQGMRHA--IYDKLD 685

Query: 826  DDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            DDGL APG  +  +DV I K   L E    + S    T+ RY     +      ET +VD
Sbjct: 686  DDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRYTKRDCSTFLRTSETGIVD 741

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG   +QED PF+  GI PD+
Sbjct: 742  QVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDI 801

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMT+G +IE L GK  VS  +   G A   P   A  V+ IS  L ++G+ 
Sbjct: 802  IINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFNDAVNVQKISNLLSEYGYH 857

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H+R  GP  +L RQP EGR+R+
Sbjct: 858  LRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRD 917

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CG++   N +     C  C+
Sbjct: 918  GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCR 977

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 978  NKTQISLVRMPYACKLLFQELMSMSIAPRM 1007


>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1186

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1170 (35%), Positives = 636/1170 (54%), Gaps = 71/1170 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKIVRANDRIVSGI----DPSI 78
            D ++++  F + +GLV Q +DS+N F+        + +  + R +++   G     +P  
Sbjct: 38   DIWEIISSFFREKGLVHQQIDSYNDFLLRIPRMARSLLEVVPRQDEQFEPGTQTETEPDQ 97

Query: 79   F-LRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTY--AAPILVNIEYVQGSHTEK 131
            + L  +DV IG PS  V G S      L P+ CRL D+TY   A + + I   +    + 
Sbjct: 98   YRLSLEDVVIGNPSHEVSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSREEQP 157

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                  ++ +GRIPIML+S RC L  KDE EL RL ECP D GGYF+I GTEKVL+ QE+
Sbjct: 158  YRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEKVLIAQER 217

Query: 192  LSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGK--------MYLLLNQFVK 240
             + N V   + +KG    I + V  S    ++  ++   K K        +   + Q  +
Sbjct: 218  QAANHVYAFSRQKGLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHGYENLLCRVAQMDE 277

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEG 297
             IP+ V+ +A+ M SD+E++Q V  D + +A+L     S+E+ + L I+T+++AL ++  
Sbjct: 278  LIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQIFTRDEALWFIGK 337

Query: 298  KV-KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            ++ K+ +  +   D +G    ++RD+ L ++ V     R KC ++  M+ R++   L + 
Sbjct: 338  RLGKQDSRENLQRDAQG---LLMRDL-LPHMGVDCAADRSKCLFIGYMVHRLLLLALGRR 393

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
               D+D++G+KR++++G L++         +  E+ KTV    +  +R       + +  
Sbjct: 394  EDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMVKTVHDYST--NRGGVVSFGRILHS 451

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GL R L+TGNF   +    + G+ Q L RL++  +L ++ R+      S K + P
Sbjct: 452  RLITDGLRRCLATGNFGDMKSGNIKTGVAQTLNRLTYSSSLSNLRRIQNPISASSKATKP 511

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC--LGVEDLELL 534
            R L  +QWG +CP +TPEG + GL+KNLALM  ++   +   ++        G   ++L 
Sbjct: 512  RNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGVVQAVQARITGFHSIDLP 571

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
               ++     F+   NG ++G HR P+     +R  RR G++   VS+  + + R + + 
Sbjct: 572  GLADVRVARVFV---NGTLIGVHRDPERLLRELRARRRGGELSNEVSIVRDIRDREIRVF 628

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLD------GVR--SFDDFLREGLIEYLDVNEE 646
            SDGGR  RPL + ++   ++++  + ELL+      G R  S++  +++G +E +D  EE
Sbjct: 629  SDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTLGGKREISWNRIIKKGYVELIDCEEE 688

Query: 647  NNALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            ++ LIA+   + + +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG 
Sbjct: 689  DSLLIAMTMTEVSKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGI 748

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
             A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+
Sbjct: 749  YASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAVVAIACYSGYNQEDSII 808

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            M++S+++RGF R    + Y A  ++  +   +    PDR     +R             L
Sbjct: 809  MSRSAVERGFFRSAFWRSYKATEERKKD-VRETFENPDRKICRVKRADYTK--------L 859

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D DGL  PG  +   D+ + K  P+    + +      D+R      +      E  VV+
Sbjct: 860  DADGLIKPGMPVIGGDILVGKTIPISE--AKLENAALDDTRLLKRDCSIASRTSEKGVVE 917

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            RV L ++ +G+   K  IR  + P +GDKF SRHGQKG  G   +QED PF+  GI PDL
Sbjct: 918  RVML-TENSGNRFTKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDL 976

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMTV  +IE L GK     G   Y + F      +  VE   + L +  F 
Sbjct: 977  IINPHAIPSRMTVAHLIETLAGKVACYKGSEVYATPFC-----SVVVEDFGKALHQLKFQ 1031

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G + +Y+G TG PL   IF GP YYQ+LKH+  DK+HAR  GP   L RQPTEGRA  
Sbjct: 1032 RYGNECLYNGHTGSPLDHLIFFGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHE 1091

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC+++YGAS  + ERL   SD + V VC +CG +   + +     C  C 
Sbjct: 1092 GGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNICGTICAADTEQNVYKCQGCD 1151

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N   IS   +PYACKLL QEL SM I+PRL
Sbjct: 1152 NDTRISQTLMPYACKLLFQELMSMAILPRL 1181


>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
          Length = 1269

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1268 (33%), Positives = 649/1268 (51%), Gaps = 174/1268 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR--ANDRIVSGIDPSIF-------- 79
            D + ++  F + +GL  Q  DSF+ F    ++ +V   A+  +     PS +        
Sbjct: 23   DCWTVISSFFETKGLASQQTDSFDEFTQRTVQDLVNEYADISLDQQNPPSSYGVPIALRR 82

Query: 80   --LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------------- 121
              ++F  V + +PS++  DG    L P+ CR  ++TY++P  + I               
Sbjct: 83   YEIKFGSVMVSRPSISETDGTVASLLPYECRDRNLTYSSPAYIKITKKVSVAIDKEIPLH 142

Query: 122  --------EYVQ-GSHTEKTTME------------KNDVVIGRIPIMLRSCRCVLYGKDE 160
                    EY + G H  K   E             N + +G++PIM++S  C L    +
Sbjct: 143  EMDEEQQAEYKRTGEHPTKLHWEVEEDGDSMKEGQPNMIFVGKMPIMVKSKICHLSQHTD 202

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKS 220
             EL  L ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK     S  + T  ++S
Sbjct: 203  EELFTLNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQ--PSPFTYTAEIRS 258

Query: 221  KTVIQMEKGK------MYLLLNQ-----------------FVKK-IPIMVVMKAMGMESD 256
                 +EKG       M  +L +                 FVK  +P+ +V +A+G+ SD
Sbjct: 259  A----LEKGSRLISSLMMKILGKGDSARGGFGQTIQTSLPFVKSDLPVAIVFRALGVVSD 314

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D   S +L    P IEE     +  +E AL+++  +  R         R  
Sbjct: 315  EDILNHICYDRNDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQASLGREKRVR 372

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G
Sbjct: 373  VAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 432

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF 432
             L++ LF  + + M  E+       L +   S+R F+L+  I   +++ GL+ +L+TGN+
Sbjct: 433  PLLAKLFRGIIRRMNQELSN----YLKRCVESNRNFNLNVAIKPGTLSNGLKYSLATGNW 488

Query: 433  -DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
             D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +
Sbjct: 489  GDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 548

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEG+ACGLVKNL+LM +V+      PLI      G+E +E    E    P++  V  NG
Sbjct: 549  TPEGQACGLVKNLSLMCYVSVGSPGEPLIDFMVSRGMEVVE--EYEPTRYPHATKVFVNG 606

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-- 609
              +G H  P+   + + + RR   +   VS+  + + R   I SD GRV RP+    +  
Sbjct: 607  SWVGVHPEPRALVNSVLETRRKSYLQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVQQED 666

Query: 610  ----GISRIKEHHMKELLDGVRS--------------FDDFLREGLIEYLDVNEENNALI 651
                G+++ +    K+L++ +                +   +R G +EY+D  EE  A+I
Sbjct: 667  DYETGLTKGQLVLTKDLVNKIAQEQAEPPSDPSERIGWQGLIRSGAVEYIDAEEEETAMI 726

Query: 652  ALYEGD-----------------------------------------ATPDT---THIEI 667
             +   D                                           P T   TH EI
Sbjct: 727  CMTPEDLEIYREQKRDEVNLTEEEKQAKLEAEKREQEEERNKRLKTKVNPTTHMYTHCEI 786

Query: 668  EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPL 727
             P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL
Sbjct: 787  HPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPL 846

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
             TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   
Sbjct: 847  ATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQE 906

Query: 788  QKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
            +K   + ++   +P +      RM+   +  L     D+DG+ APG  +   D+ I K +
Sbjct: 907  KKVGLNYTEIFEKPFQQT--TLRMKHGTYDKL-----DEDGIVAPGVRVSGEDIIIGKTA 959

Query: 848  PLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRR 907
            P++     +    QT  R   +       +G   +VD+V L  + +    +K  +R T+ 
Sbjct: 960  PIDQENQDLGTRTQTHQRRDISTPLRSTENG---IVDQVILTVNADNVKYVKVRVRTTKI 1016

Query: 908  PELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGK 967
            P++GDKF+SRHGQKG  G   +QED PFS  G+ PD+I+NPH  PSRMT+  +IE L  K
Sbjct: 1017 PQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSK 1076

Query: 968  AGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                 G     + F +      TV+S+S+ L KHG+   G +++Y+G TG  L+A +F G
Sbjct: 1077 VSTLEGMEGDATPFTDV-----TVDSVSDILRKHGYQSRGFEVMYNGHTGRKLRAQVFFG 1131

Query: 1028 PIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIF 1087
            P YYQ+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + 
Sbjct: 1132 PTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLK 1191

Query: 1088 ERLMVSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
            ERL   SD F V VC +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQ
Sbjct: 1192 ERLFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQ 1251

Query: 1147 SMNIVPRL 1154
            +MNI  R+
Sbjct: 1252 AMNIAARM 1259


>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
            206040]
          Length = 1261

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1264 (33%), Positives = 648/1264 (51%), Gaps = 175/1264 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
            D + ++  F + +GLV Q  DSF+ F  T I+ +V     I        S    +I LR 
Sbjct: 24   DCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGRTIALRR 83

Query: 82   ----FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE------ 130
                F  V + +P+++  DG    L P+ CR  ++TYA+P+ + I     +  E      
Sbjct: 84   YEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSAAVEREVPLH 143

Query: 131  ----------------------------------KTTMEKNDVVIGRIPIMLRSCRCVLY 156
                                              K+   K+ V +G++PIM++S  C L 
Sbjct: 144  EMDDAQQEQYARTGENPTKLEWEEEENGEDDNLGKSDDWKDMVFVGKLPIMVKSKICHLS 203

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTE 216
             + +  L  + ECP D GGYF+I G+EKVL+ QE+ + N  I+   KK     S  + T 
Sbjct: 204  REQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAAN--IVQVFKKAQ--PSAYTYTA 259

Query: 217  TVKSKTVIQMEKGK-----MYLLLN------------------QFVKK-IPIMVVMKAMG 252
             ++S     +EKG      M L L                    FVK  +P+ +V +A+G
Sbjct: 260  EIRSA----LEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRALG 315

Query: 253  MESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            + SD++++  +  D   S +L    P IEE     +  +E AL+++  +  R   G    
Sbjct: 316  VVSDEDILNHICYDRNDSQMLEMLRPCIEEA--FCVQDREVALDFIGKRGNRDQAGLGRE 373

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             R   A  IL+   L ++     +   K F++  M+ ++++  L +   DD+D+ G KRL
Sbjct: 374  KRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRL 433

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            +L+G L++ LF  + + M +E+   +   +     +  F+L+  I   +++ GL+ +L+T
Sbjct: 434  DLAGPLLAKLFRGIMRRMNTELANYLRRCVEG---NRHFNLAVGIKPGTLSNGLKYSLAT 490

Query: 430  GNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            GN+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++C
Sbjct: 491  GNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 550

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG+ACGLVKNL+LM +V+      PLI      G+E +E    E L  P++  + 
Sbjct: 551  PAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVE--EYEPLRYPHATKIF 608

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA- 607
             NG+ +G H+ PK   + +   RR   +   VS+    + +   I SD GRV RP+    
Sbjct: 609  VNGVWVGIHQDPKHLVNQVLDTRRKSYLQYEVSLIREIRDQEFKIFSDAGRVMRPVFTVQ 668

Query: 608  --DKGISRIKEHHM---KELLDGVRS--------------FDDFLREGLIEYLDVNEENN 648
              D   + I + H+   K+L++ +                ++  +R G +EYLD  EE  
Sbjct: 669  QEDDPETGINKGHLVLTKDLVNRLAKEQAEPPEDPSMKLGWEGLIRAGAVEYLDAEEEET 728

Query: 649  ALIALYEGD----------------------------ATPDT---THIEIEPFTILGVIA 677
            ++I +   D                              P T   TH EI P  ILG+ A
Sbjct: 729  SMICMTPEDLELYRLQKAGIATDEDIGDDPNKRLKTKTNPTTHMYTHCEIHPSMILGICA 788

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + 
Sbjct: 789  SIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSMEFLK 848

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+   +K   + ++ 
Sbjct: 849  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQEKKVGLNYTEV 908

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLI------LDDDGLAAPGEIIKPNDVYINKESPLET 851
              +P              H N L +       LD+DG+ APG  +   D+ I K +P++ 
Sbjct: 909  FEKP-------------FHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDA 955

Query: 852  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 911
                +  T  T  + R      +    E  +VD+V +  + +    +K  +R T+ P++G
Sbjct: 956  ETQDLG-TRTTMHQRRDISTPLRST--ENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIG 1012

Query: 912  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 971
            DKF+SRHGQKG  G   +QED PF+  G+ PD+I+NPH  PSRMT+  +IE L  K    
Sbjct: 1013 DKFASRHGQKGTIGVTYRQEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 1072

Query: 972  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
             G     + F +      TV+S+SE L KHG+   G +++Y+G TG  L+A +F GP YY
Sbjct: 1073 EGMEGDATPFTDV-----TVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYY 1127

Query: 1032 QKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLM 1091
            Q+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL 
Sbjct: 1128 QRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLF 1187

Query: 1092 VSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNI 1150
              SD F V +C +CGL+    N   ++  C  CKN   I+ + +PYA KLL QELQSMNI
Sbjct: 1188 EVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNI 1247

Query: 1151 VPRL 1154
              R+
Sbjct: 1248 AARM 1251


>gi|407404199|gb|EKF29761.1| DNA-directed RNA polymerase III subunit, putative, partial
            [Trypanosoma cruzi marinkellei]
          Length = 1194

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1170 (35%), Positives = 636/1170 (54%), Gaps = 71/1170 (6%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKIVRANDRIVSGI----DPSI 78
            D ++++  F + +GLV Q +DS+N F+        + +  + R +++   G     +P  
Sbjct: 46   DIWEIISSFFREKGLVHQQIDSYNDFLLRIPRMARSLLEIVPRQDEQFEPGTQTETEPDQ 105

Query: 79   F-LRFKDVRIGQPSMTVDGVSEK----LNPHMCRLSDMTY--AAPILVNIEYVQGSHTEK 131
            + L  +DV IG PS    G S      L P+ CRL D+TY   A + + I   +    + 
Sbjct: 106  YRLSLEDVVIGNPSHEFSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSREEQP 165

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
                  ++ +GRIPIML+S RC L  KDE EL RL ECP D GGYF+I GTEKVL+ QE+
Sbjct: 166  YRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEKVLIAQER 225

Query: 192  LSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQMEKGK--------MYLLLNQFVK 240
             + N V   + +KG    I + V  S    ++  ++   K K        +   + Q  +
Sbjct: 226  QAANHVYAFSRQKGLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHGYENLLCRVAQMDE 285

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEG 297
             IP+ V+ +A+ M SD+E++Q V  D + +A+L     S+E+ + L I+T+++AL ++  
Sbjct: 286  LIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQIFTRDEALWFIGK 345

Query: 298  KVKRSTFGSPPN-DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
            ++ +    S  N  RE +A  ++RD+ L ++ V     R KC ++  M+ R++   L + 
Sbjct: 346  RLGKQD--SRENLQREAQAL-LMRDL-LPHMGVDCAADRGKCLFIGYMVHRLLLLALGRR 401

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
               D+D++G+KR++++G L++         +  E+ KTV    +  +R       + +  
Sbjct: 402  EDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMIKTVHDYST--NRGGVVGFGRILHS 459

Query: 417  DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
              IT GL R L+TGNF   +    + G+ Q L RL++  +L ++ R+      S K + P
Sbjct: 460  RLITDGLRRCLATGNFGDMKSGNIKTGVAQTLNRLTYSSSLSNLRRIQNPISASSKATKP 519

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC--LGVEDLELL 534
            R L  +QWG +CP +TPEG + GL+KNLALM  ++   +   ++        G   ++L 
Sbjct: 520  RNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGVVQAVQARITGFHSIDLP 579

Query: 535  SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIA 594
               ++     F+   NG ++G HR P+     +R  RR G++   VS+  + + R + + 
Sbjct: 580  GLADVRVARVFV---NGTLIGVHRDPERLLRELRARRRGGELSNEVSIVRDIRDREIRVF 636

Query: 595  SDGGRVCRPLVIADKGISRIKEHHMKELLD------GVR--SFDDFLREGLIEYLDVNEE 646
            SDGGR  RPL + ++   ++++  + ELL+      G R  S++  +++G +E +D  EE
Sbjct: 637  SDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTPGGKREISWNRVIKKGYVELIDCEEE 696

Query: 647  NNALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            ++ LIA+   + + +   +H E++P  ILG+ A +IPYP+HNQSPRNTYQ AMGKQAMG 
Sbjct: 697  DSLLIAMTTTEVSKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGI 756

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
             A N   RMD+  ++L YPQ+PL+ T+ +  +  + L AG NA VA+  YSGY+ ED+I+
Sbjct: 757  YASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAVVAIACYSGYNQEDSII 816

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            M++S+++RGF R    + Y A  ++      +    PD   P   R++   ++ L     
Sbjct: 817  MSRSAVERGFFRSAFWRSYKATEER-KKDVRETFENPD---PNICRVKRADYTKL----- 867

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D DGL  PG  +   D+ + K  P+    +    T   + R      +      E  VV+
Sbjct: 868  DTDGLIKPGMPVMGGDILVGKTIPIPE--AAQENTAMKNKRLLKRECSIASRTSEKGVVE 925

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V L ++ NG+   K  +R  + P +GDKF SRHGQKG  G   +QED PF+  GI PDL
Sbjct: 926  KVML-TENNGNRFTKVKVRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDL 984

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMTV  +IE L GK     G   Y + F      +  VE   + L +  F 
Sbjct: 985  IINPHAVPSRMTVAHLIETLAGKVACYKGSEVYATPFC-----SVVVEDFGKALHQLKFQ 1039

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G + +Y+G TG PL   IF GP YYQ+LKH+  DK+HAR  GP   L RQPTEGRA  
Sbjct: 1040 RYGNECLYNGHTGSPLDHLIFFGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHE 1099

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC+++YGAS  + ERL   SD + V VC +CG +   + +     C  C 
Sbjct: 1100 GGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNICGTICAADTEQNVYKCQGCD 1159

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N   IS   +PYACKLL QEL SM I+PRL
Sbjct: 1160 NDTRISQTLMPYACKLLFQELMSMAILPRL 1189


>gi|407461849|ref|YP_006773166.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
            koreensis AR1]
 gi|407045471|gb|AFS80224.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
            koreensis AR1]
          Length = 1115

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/1141 (34%), Positives = 624/1141 (54%), Gaps = 48/1141 (4%)

Query: 31   KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDVRIGQ 89
            ++ ++ + LK  G+ +QHL+SF+ F+  G++ I+    +I +   +    ++   V++ Q
Sbjct: 8    RWPVIQDILKREGVARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQ 67

Query: 90   PSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
            P M  +DG    + P   RL +++Y+AP+++    V+    +   +E   V IG +P+M 
Sbjct: 68   PRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVE----DGKILESRFVHIGDVPVMA 123

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK-KGNI 207
            +S  C+L+     +L   GE P DPGGYFII G+E+V++  E LS N++I+D +   GNI
Sbjct: 124  KSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVGGNI 183

Query: 208  --NASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
               A V SS    ++K  + M+  G +   +      IP++ +M+A+G+ESD+E+   V 
Sbjct: 184  VHKAKVYSSIVGYRAKLELVMKSDGLIVARIPGSPVDIPVVTLMRALGLESDREIAAAVS 243

Query: 265  RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
                    L  S E+    D+ T + A+ Y+    KR   G     +  RA ++L    L
Sbjct: 244  LVDELQDELEGSFEKAG--DVPTAKDAIVYIS---KRIAPGMLEEFQIKRAETLLDWGLL 298

Query: 325  ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
             ++  H  N + K  ++     +++E  L     DDKD+ GNK ++ +GQ+++ LF   F
Sbjct: 299  PHLGKHPENRKEKAQFLGEAACKLLELKLGWIKPDDKDHYGNKVIKFAGQMLADLFRTAF 358

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-TVGLERTLSTGNFDVKRFKMHRKG 443
            + ++ +++      L +  +    +     +R  I T  L   ++TGN+   R      G
Sbjct: 359  RNLVRDMKYQ----LERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRV-----G 409

Query: 444  MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKN 503
            +TQ+L R +++ T+ H+ R+     +++     R L  + +G +CP +TPEG  CGLVKN
Sbjct: 410  VTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKN 469

Query: 504  LALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCF 563
            LAL   ++ +     ++   Y LG   +     +E    +   +  +G ++G ++  +  
Sbjct: 470  LALSGIISVNVPSEEIVEKLYDLGT--VHFFDAKEDLKKDGTRIFVDGKLIGYYKDGEQL 527

Query: 564  ADVMRKLRRAGKIGEFVSVFVNEKQ-----RCVYIASDGGRVCRPLVIADKGISRIKEHH 618
            A+ +R LRR  KI   V V  ++ +     R +Y+  + GRV RPL+I       +    
Sbjct: 528  AESLRDLRRNSKIHPHVGVSFHKSEIEGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADL 587

Query: 619  MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
            + ++   + S+ D LR G++E +D NEE N  + L E D T   TH+E+ P  ILG  A 
Sbjct: 588  LDKISKKLISWTDLLRMGVLEMIDANEEENCYVTLDEKD-TKKHTHLEVFPPAILGAGAS 646

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            +IPYP HNQSPRNTY+ AM KQ++G              + ++YPQ P++ T+ ++L+G 
Sbjct: 647  IIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGL 706

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
            +   AGQN  VAV+ + GY+IEDAIV++K+S+DRG GR    + Y A  ++Y     D  
Sbjct: 707  EDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFYRIYDAEAKQYPGGMRDAF 766

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
              P+     AE     +       +L++DG+ A    +K  D+ I K SP       M  
Sbjct: 767  EIPN-----AEDNIRGYKGERAYRLLEEDGVVAAEAPVKGGDILIGKTSP----PRFMEE 817

Query: 859  TGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
              + +S     R T  G    ET VVD V +     G    K   R  R PE+GDKF+SR
Sbjct: 818  YREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASR 877

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG+ G + + ED P++  G+ PD+++NPH FPSRMTVG M+E + GK+    G+   
Sbjct: 878  HGQKGILGILAKAEDLPYTASGMSPDVLINPHAFPSRMTVGMMMESICGKSAALRGKRFD 937

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
            GSAF       + ++ + E +  HGF Y+GK+++Y G TG      +F+G +YYQKL HM
Sbjct: 938  GSAF-----VGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHM 992

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +RL+  SD  
Sbjct: 993  VADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKS 1052

Query: 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLA 1157
            ++ VC  CGL+ Y++ K +  +C  C +   +SS+ + YA KLL+QE+QS+N+ PRL + 
Sbjct: 1053 DIFVCERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIK 1112

Query: 1158 E 1158
            E
Sbjct: 1113 E 1113


>gi|301616295|ref|XP_002937598.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Xenopus
            (Silurana) tropicalis]
          Length = 1151

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1205 (34%), Positives = 636/1205 (52%), Gaps = 133/1205 (11%)

Query: 12   DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
            DE  PD  + A  +        ++  +   +GLV+Q LDSF+ F+   +++IV       
Sbjct: 15   DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66

Query: 65   -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
             +A  +  +G     P   L+F+ + + +P+    DG    + P+  RL ++TY+AP+ V
Sbjct: 67   LQAEAQHTTGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126

Query: 120  NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
            +I + V     E+   +     IG+IPIMLRS  C+L G  + +L  L ECPLDPGGYFI
Sbjct: 127  DITKTVVKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186

Query: 179  IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
            I G+EKVL+ QE+++ N V +   K           + + +S+    S  V  + +G   
Sbjct: 187  INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSMLARGGQG 246

Query: 230  --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
                    ++   L    +++PI++V +A+G  SD+++++ +     DP    ++ PS++
Sbjct: 247  AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306

Query: 279  ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
            E     I  Q  AL ++  +  +   G     R   A  +L+   L +V V +     K 
Sbjct: 307  EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
            +++  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK 
Sbjct: 363  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
            +D       R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F
Sbjct: 423  ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475

Query: 454  IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
              TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++  
Sbjct: 476  ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +  P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR 
Sbjct: 536  SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 574  GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
              I    VS+  + ++R + I +D GR+CRPL+I +K    +K  H+ +L +      S+
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSW 653

Query: 630  DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
             D +  G++EY+D  EE   ++A+     TPD             TH EI P  ILGV A
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCA 708

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + 
Sbjct: 709  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIV----MNKSSLDRGFGRC---IVVKKYTAINQKY 790
            + +L AG N+ VA                  ++ ++  +    C   +  + Y     K 
Sbjct: 769  FRELPAGINSIVAXXXXXXXXXXXXXXXXXHISLATNIKHPSECQESVFYRSYKEQESKK 828

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL- 849
                 +   +P R     E  Q + H+  +   LDDDGL APG  +  +DV I K   L 
Sbjct: 829  GFDQEEVFEKPTR-----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLP 881

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            E    + S    T+ RY     +      ET +VD+V +  ++ G    KF         
Sbjct: 882  ENEDELES----TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEG---YKF--------- 925

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
                               +  D PF+  GI PD+I+NPH  PSRMTVG +IE L GK  
Sbjct: 926  ------------------CKIRDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVS 967

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
             + G     + F +    A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP 
Sbjct: 968  ANKGEIGDATPFND----AVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPT 1023

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            YYQ+LKHMV DK+H+R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ER
Sbjct: 1024 YYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRER 1083

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
            L  +SDP++V VC +CGL+   N +     C  C+N   IS +++PYACKLL QEL SM+
Sbjct: 1084 LFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMS 1143

Query: 1150 IVPRL 1154
            I PR+
Sbjct: 1144 IAPRM 1148


>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
            G186AR]
          Length = 1307

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1208 (34%), Positives = 633/1208 (52%), Gaps = 159/1208 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++            IDP +  
Sbjct: 126  DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDPVVLR 185

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-------------- 121
               L+F  V + +PS+T  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 186  RYELKFGTVMLARPSVTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 245

Query: 122  --EYVQGS--------------HTEKTTM-----EKNDVVIGRIPIMLRSCRCVLYGKDE 160
              +  QG               H E   +     E+ +V IGR+PIML+S  C+L   +E
Sbjct: 246  RDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 305

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTS 213
              L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V  
Sbjct: 306  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 365

Query: 214  STETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
             +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  + 
Sbjct: 366  GSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 425

Query: 265  RDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AF 316
             D   + +L    P IEE     I  +E AL+++  +      GS P   + E R   A 
Sbjct: 426  YDRNDTPMLEMLKPCIEE--GFVIQDREVALDFISKR------GSSPTSMNHEKRVRYAR 477

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L+
Sbjct: 478  DIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLL 537

Query: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVK 435
            + LF  LF  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K
Sbjct: 538  ANLFRILFMRVTKDLYKYVQRCVET---NRQLYLNIGVKASTLSGGLKYALATGNWGEQK 594

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG
Sbjct: 595  KAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 654

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
            +ACGLVKNLALM  +T      P+I       +E LE    E   +PN+  V  NG+ +G
Sbjct: 655  QACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNATKVFVNGVWVG 712

Query: 556  KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK------ 609
             HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + +       
Sbjct: 713  VHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSEN 772

Query: 610  --GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL 653
               +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I +
Sbjct: 773  CGSLVLSKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 832

Query: 654  YEGD-------------------------------ATPDTTHIEIEPFTILGVIAGLIPY 682
               D                                T   TH EI P  ILG+ A +IP+
Sbjct: 833  TPEDLETSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPF 892

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 893  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 952

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 953  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERFEKPM 1012

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R    ++ +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 1013 R----SDTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEEL---GQR 1062

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 1063 TKQHTKIDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQK 1121

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R   G A 
Sbjct: 1122 GTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGFEGDA- 1178

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+SIS  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV D
Sbjct: 1179 ---TPFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDD 1235

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V 
Sbjct: 1236 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1295

Query: 1101 VCRVCGLL 1108
            +C +CGL+
Sbjct: 1296 ICDICGLM 1303


>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1266

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1201 (33%), Positives = 619/1201 (51%), Gaps = 159/1201 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLRF 82
            D + ++  F + +GLV Q +DSF+ FV+T ++++V  N ++        S  +  I LR 
Sbjct: 31   DCWMVISSFFEAKGLVSQQVDSFDEFVSTTMQELVEENSQLTLDQNNPPSADENPIALRR 90

Query: 83   KDVRIG-----QPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE-------------- 122
             +++ G     +P+MT  DG ++ + P   RL ++TY++P+ + +               
Sbjct: 91   YEIKFGTVLLSRPAMTEGDGTTQVMLPQEARLRNLTYSSPLYLEMTKNVSVAVERNVPLN 150

Query: 123  ----------YVQGSHTEKTTMEKND---------------VVIGRIPIMLRSCRCVLYG 157
                         G H  +   E  D               V IG++PIML+S  C+L  
Sbjct: 151  ELDDEQEAEMAATGIHPTRLVWEDEDGREAGPDKIEPTPDRVFIGKLPIMLKSKYCILKD 210

Query: 158  KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINAS 210
             DE +L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++
Sbjct: 211  LDEDDLYAWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFQKSLPSPTPYVAEIRSA 270

Query: 211  VTSSTETVKSKTVIQMEKGKMYLLLN-QFVKK--------IPIMVVMKAMGMESDQEVVQ 261
            +   +  +   ++    KG        Q +K         +PI VV +A+G+ SD++++ 
Sbjct: 271  LEKGSRLISQMSIKLFSKGDGGRGGFGQTIKSTLPYIRADVPIAVVFRALGVVSDEDILN 330

Query: 262  MV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSI 318
             +     D +   +L P IEE     I  +E AL+++  + + ST     + R   A  I
Sbjct: 331  HICYDRNDTQMLEMLKPCIEEA--FVIQDREVALDFIGKRGQNSTLTR--DKRVKYARDI 386

Query: 319  LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            ++   L ++     +   K F++  M+ +M++  L +   DD+D+ G KRL+L+G L++ 
Sbjct: 387  MQKELLPHISQSEGSETRKAFFLGYMVHKMLQCALGRRETDDRDHFGKKRLDLAGPLLAK 446

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRF 437
            LF  LF+ + S+V K + + +     +  F+L+  +   ++T GL+ +L+TGN+ D K+ 
Sbjct: 447  LFRGLFRRLTSDVYKYLKLCVEN---NKEFNLALGVKATTMTNGLKYSLATGNWGDQKKA 503

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
                 G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+A
Sbjct: 504  ASSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 563

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLALM +VT      P+I       +E LE    E L +PN+  V  NG+ +G H
Sbjct: 564  CGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLE--EYEPLRSPNATKVFVNGVWVGVH 621

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KG 610
            R P      ++ LRR+  I   VS+  + + R   I +D GRVCRPL + D       KG
Sbjct: 622  RDPGHLVKTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNDVESPNKG 681

Query: 611  ISRIKEHHMKELLDGVR---------------SFDDFLREGLIEYLDVNEENNALIALYE 655
               + + H++ L +                   F   + EG++EY+D  EE   +I +  
Sbjct: 682  NLVLNKDHIRRLEEDQHLHANTDPALKDELYFGFQGLINEGVVEYVDAEEEETIMIVMTP 741

Query: 656  GDAT------------PDT-------------------THIEIEPFTILGVIAGLIPYPH 684
             D              PD                    TH EI P  ILG+ A +IP+P 
Sbjct: 742  EDLDISRQIQAGYKIRPDNSGDLNKRVKAPVNPTAHIWTHCEIHPSMILGICASIIPFPD 801

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AG
Sbjct: 802  HNQSPRNTYQSAMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAG 861

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  +   +P R 
Sbjct: 862  QNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFYRAYTDQEKRIGMNALESFEKPYRN 921

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 +             LD+DGL APG  +  +D+ I K +PL        P    D 
Sbjct: 922  DTMKLKQGTYDK-------LDEDGLVAPGVRVSGDDIIIGKTAPL--------PADSQDF 966

Query: 865  RYRSARQTYKGP-----DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
              R+   T +         E  +VD+V L ++  G   +K  +R T+ P++GDKF+SRHG
Sbjct: 967  GIRNKAHTKRDASTPLRSTENGIVDQVLLTTNSEGQKFVKVRMRTTKIPQIGDKFASRHG 1026

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   + ED PF+ +GI PDLI+NPH  PSRMT+  +IE    K     G     +
Sbjct: 1027 QKGTIGITYRHEDMPFTCQGIVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDAT 1086

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F E      TV+S+S+ L  HG+   G +++Y G TG  + A +F+GP YYQ+L+HMV 
Sbjct: 1087 PFTEV-----TVDSVSKLLRNHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVD 1141

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+I++GA+  + ERL   SD F V
Sbjct: 1142 DKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMISHGAASFLKERLFEVSDAFRV 1201

Query: 1100 Q 1100
             
Sbjct: 1202 H 1202


>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1263

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1251 (33%), Positives = 642/1251 (51%), Gaps = 156/1251 (12%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-------VSGIDPSIFL-- 80
            D ++++  F  ++ L    +DSFN+F+ +G++ +V     +       V   DP+  +  
Sbjct: 38   DCWKVISSFFDIKKLASMQIDSFNHFMRSGLQDLVNEKGGVTLDHAQNVDEDDPNPVVIK 97

Query: 81   ----RFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
                +F  V + +P+M   DGV+    PH  RL  +TYA+P  V +              
Sbjct: 98   RHEVKFGKVTLSKPNMVEGDGVTADCMPHEARLRSLTYASPAFVKMTRRTYYAKEKPWDD 157

Query: 123  ---------------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYG---KDEAELA 164
                           Y +    E     + +V IG+IPIM+RS  C L     +DE +L 
Sbjct: 158  AGVDEGVMREDGSQLYWREGTEEGDFDSEKEVYIGKIPIMVRSMTCHLMSDRFQDERDLY 217

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVI 224
              GECP D GGYFII G+EKVL+ QE+ + N V +   K      +  +   +V  +   
Sbjct: 218  AWGECPYDQGGYFIINGSEKVLIAQERSAGNIVQV-FQKAAPAPFTHLAEIRSVIDRGAR 276

Query: 225  QMEKGKMYLLLN-----------------QFVKK-IPIMVVMKAMGMESDQEVVQMV--- 263
             M +  + L                     +VK+ IP+++V +A+ + SD ++++ +   
Sbjct: 277  MMSQCTVKLFRRVDGPEGTKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFD 336

Query: 264  GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF 323
              D     +L+ S++E     I   + A +++  +    T  S  ++R+  A  IL+  F
Sbjct: 337  QSDKEMMDMLMGSLQE--GQPIQGADLARDFIARRGNVPTLKS--HERQKHATDILQKEF 392

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++    +    K F++  M+ R+++  L +   DD+D++G KRL+L+G L++ LF   
Sbjct: 393  LPHIGQGPDATARKAFFLGYMVHRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQ 452

Query: 384  F----KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFK 438
            F    K     +QK V+    +P      ++        IT GL+ +L+TGN+ D K+  
Sbjct: 453  FDKAAKDFYRYMQKRVEA--GQP-----INIMAGFKHPIITSGLKYSLATGNWGDQKKLD 505

Query: 439  MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
              + G++QVL+R +F  TL H+ R +    +  K++ PR L  + WG +CP +TPEG+AC
Sbjct: 506  KAKAGVSQVLSRYTFSSTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQAC 565

Query: 499  GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK-H 557
            GLVKNL+LM+ VT   E  PL++      VE LE    E   NP +  V  +G+      
Sbjct: 566  GLVKNLSLMSMVTNSYETAPLVNYVLTKNVEALE--DWEPRLNPKATKVFVDGVWFAVIL 623

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR---- 613
            R PK   D +R LRR G     VS+  + +++   I+ D GR+ RPL + +   S     
Sbjct: 624  RDPKRLVDDLRMLRRRGVFDSQVSLVWDIREKEFKISGDSGRIVRPLFVVETDRSSENHG 683

Query: 614  -----------------IKEHHMKELLDGVRSF--DDFLREGLIEYLDVNEENNALIAL- 653
                             +KE+  ++  + V+ F   + L  G++EYLD  EE  A+I + 
Sbjct: 684  NLVLNKEHIRKLDETTYLKENDFQDWNEQVKPFGWTELLASGVVEYLDAEEEETAMICMT 743

Query: 654  ---------------YEGDATPDT-------------THIEIEPFTILGVIAGLIPYPHH 685
                            E D  P +             TH EI P  ILGV A +IP+P H
Sbjct: 744  PEALSDSRAKHFGLEIENDDDPLSRNDPLLNPHAHTFTHCEIHPSMILGVCASIIPFPDH 803

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL  T  ++ + + +L AGQ
Sbjct: 804  NQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLARTMAMDYLKFRELPAGQ 863

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA+ +YSGY+ ED+++MN+SS+DRG  R +  + Y    +   +S  ++  +P R  
Sbjct: 864  NAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTR-- 921

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
              A+ +++ H +      +D+DG+ APG  +   D+ + K +P+      +   GQ   +
Sbjct: 922  --ADTLRLKHGT---YDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEEL---GQRLKQ 973

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            +     +      E+ +VD+V L +   G    K  +R T+ P++GDKF+SRHGQKG  G
Sbjct: 974  HIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAKVRVRTTKVPQIGDKFASRHGQKGTIG 1033

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               + ED PF+  GI PDLI+NPH  PSRMT+  +IE    K     G     + F +  
Sbjct: 1034 ITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSKVATLRGDEGDATPFTKV- 1092

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                TV  ISE L   G+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+H+R
Sbjct: 1093 ----TVTQISELLRNMGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSR 1148

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V VC +C
Sbjct: 1149 ARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHVCDIC 1208

Query: 1106 GLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            GL+     KLK     C  C N + IS + LPYA KLL QEL +MNI  RL
Sbjct: 1209 GLMTVIA-KLKKNTFECKNCNNKNKISQIYLPYAAKLLFQELWAMNIAARL 1258


>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 2479]
          Length = 1732

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/1167 (35%), Positives = 622/1167 (53%), Gaps = 166/1167 (14%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI----------VSGIDPSIF 79
            D ++++  F   +GLV+Q L+SFN FV   ++++V  N R+          V G +   +
Sbjct: 35   DYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHTGVMGDETRRY 94

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTE------- 130
             + F  + + + +MT +DG +  L P   RL ++TYAAP+ V+++    S  +       
Sbjct: 95   EITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLTYAAPLYVDMKKSTLSAGDVDDPIEA 154

Query: 131  --KTTMEKNDVV---------IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFII 179
              K  ++ N V+         IG++P+M+RS  C+L+G  +     L ECP D GGYFII
Sbjct: 155  DWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECPYDQGGYFII 214

Query: 180  KGTEKVLLIQEQLSKNRVII--DTDKKGNINAS-VTSSTET---VKSKTVIQM------- 226
             G+EKVL+ QE+++ N V +    D    I  S VTS  E      SKTV++M       
Sbjct: 215  NGSEKVLIAQERMAANTVYVFKKADPSPVIYLSEVTSQMEKGGKTPSKTVVKMYLRAQDK 274

Query: 227  -EKGKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECA 281
               G +  +   + K  IPI++V +A+G+  D++V+  +  +P  +A+L    P IEE  
Sbjct: 275  ATTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLEMLRPCIEEA- 333

Query: 282  NLDIYTQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCF 339
               I  ++ AL+++   G+ ++ T  S                              K F
Sbjct: 334  -FSIQDRDTALDFIGRRGQQEKGTRASR-----------------------------KAF 363

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIIL 399
            ++  M+ R+  A L +  +DD+D+ G KRL+L+G L++ LF  LFK +  +V + +   +
Sbjct: 364  FLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHLQKCV 423

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLG 458
                    F L   I    IT GL+ +L+TGN+ D  +    R G++QVL R +F  TL 
Sbjct: 424  ET---HKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTLS 480

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM++++      P
Sbjct: 481  HLRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYSAP 540

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            ++      G+E  +    E    PN+  V  NG+ +G HR      + + ++RR G++  
Sbjct: 541  VMEFLEEWGLEPQD----EYGSAPNATKVFVNGVWMGIHRDAVKLHENLLEMRRGGQLKH 596

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS--RIKEHH----------MKELLDGV 626
             VS+  + ++R + + +D GRVCRPL I D+     R+K  H          ++E +DG 
Sbjct: 597  EVSIVRDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLENIADGLEEAVDG- 655

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGD----------------------------- 657
             ++D+ L +G+IEY+D  EE   LIA+   D                             
Sbjct: 656  SAWDELLYQGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVARAQAAHTLEAFDPTA 715

Query: 658  ------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                   + + TH+EI P  ILGV A ++P+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 716  RVKSSSWSQNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGIHLTNYQL 775

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD++  +L YPQ PL TT++++ + +  L AGQNA VA++ YSGY+ ED+++MN+SS+D
Sbjct: 776  RMDTMANILYYPQSPLATTQSMKYLKFSDLPAGQNAIVAILCYSGYNQEDSVIMNQSSID 835

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R +  + YT   +       +   +PDR     E +++ H S+     LD+DGL  
Sbjct: 836  RGLFRSLYYRAYTDTEKMVGMQKVESFEKPDRN----ETLRMKHGSSDRYAKLDNDGLIT 891

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG-----PDGETCVVDRV 886
            P   +  +D+ I K +P+        P    +   RSA  T +         E  VVD+V
Sbjct: 892  PATNVNGDDIIIGKTAPI--------PPDSEELGQRSATHTKRDVSTPMKSTEQGVVDQV 943

Query: 887  ALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIM 946
             + ++ +G   +K  IR TR P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+
Sbjct: 944  MITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIII 1003

Query: 947  NPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYN 1006
            NPH  PSRMT+G ++E L  K     GR    + F E      TVES+S+ L + G+   
Sbjct: 1004 NPHAIPSRMTIGHLVECLLSKLATLTGREGDATPFTEL-----TVESVSKLLRQRGYQSR 1058

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y G TG  L+A ++ GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GG
Sbjct: 1059 GLEVMYHGHTGKKLRAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGG 1118

Query: 1067 LRVGEMERDCL-------IAYGASMLI 1086
            LR GEMERDCL       +A G SM I
Sbjct: 1119 LRFGEMERDCLHGDTRVTLASGVSMRI 1145



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%)

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            +C+I++G +  + ER+  SSD F + VC  CGL+   N K +   CS C+N   IS + +
Sbjct: 1646 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANLKKQEFHCSVCRNSTQISQIYI 1705

Query: 1135 PYACKLLIQELQSMNIVPRL 1154
            PYA KLL QELQ+MN+  R+
Sbjct: 1706 PYAAKLLFQELQAMNVTVRM 1725


>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
            Silveira]
          Length = 1205

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1208 (34%), Positives = 635/1208 (52%), Gaps = 159/1208 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 24   DCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDDPDPVMVR 83

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-------------- 121
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I              
Sbjct: 84   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGRERSLAE 143

Query: 122  ---------------EYVQGSHTE-------KTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159
                              +G++ +       +   ++ ++ IG++PIML+S  C+L    
Sbjct: 144  RDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKDLG 203

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 204  EHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 263

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 264  KGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 323

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   + E R   A
Sbjct: 324  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYA 375

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ ++++  L +  +DD+D+ G KRL+L+G L
Sbjct: 376  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPL 435

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +     + +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 436  LANLFRVLFMRLTKDLYKYVQRCVET---NRQLYLNIGVKASTLTGGLKYALATGNWGEQ 492

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 493  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 552

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM ++T      P+I       +E LE    E   +PNS  +  NG+ +
Sbjct: 553  GQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKIFVNGVWV 610

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 611  GVHRDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 670

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I 
Sbjct: 671  NSGSLVLTKEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIV 730

Query: 653  L----------YEGDATPD--------------------TTHIEIEPFTILGVIAGLIPY 682
            +          Y+    P+                     TH EI P  ILG+ A +IP+
Sbjct: 731  MSPEDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPF 790

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L 
Sbjct: 791  PDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELP 850

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P 
Sbjct: 851  AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPM 910

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R+    + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ 
Sbjct: 911  RS----DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEEL---GQR 960

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQK 921
              ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQK
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQV-LVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQK 1019

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R + G A 
Sbjct: 1020 GTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA- 1076

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
               +   D TV+S+S  L +HG+   G +++Y+G TG  L A IF+GP YYQ+L+HMV D
Sbjct: 1077 ---TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDD 1133

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1100
            K+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF + 
Sbjct: 1134 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRIH 1193

Query: 1101 VCRVCGLL 1108
            +C +CGL+
Sbjct: 1194 ICDICGLM 1201


>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 999

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/1052 (37%), Positives = 570/1052 (54%), Gaps = 94/1052 (8%)

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            MLRS  C L+G  + EL  LGECP D GGYF+I G+EKVL+ QE++S N V +   K+ +
Sbjct: 1    MLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPS 60

Query: 207  ---INASVTSSTET----VKSKTVIQMEK-------GKMYLLLNQFVKKIPIMVVMKAMG 252
                 A   S  E       S  + QM         G +   L      IPI VV +A+G
Sbjct: 61   KFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRALG 120

Query: 253  MESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
              +D+++++ +     D     +L PSIEE     I +QE AL+++ GK + S  G    
Sbjct: 121  FVADKDILEHICYDLADNEMMEMLRPSIEEA--FVIQSQEVALDFI-GK-RGSAVGVSRE 176

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             R   A  IL+   L +V V  +    K +++  M+ R++   L +   DD+D+ GNKRL
Sbjct: 177  KRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRL 236

Query: 370  ELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLER 425
            +L G L++ LF  LF+ +  +V    Q+ +D             L   I   +IT GL+ 
Sbjct: 237  DLGGPLLAQLFRQLFRKLTKDVRLYCQRCID-------SGKEIQLQLAIKAKTITQGLKY 289

Query: 426  TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
            +L+TGN+  +  +  R G++QVL RLS+  TL H+ R++    +  K++ PR L  S WG
Sbjct: 290  SLATGNWGSQGAQDIRAGVSQVLNRLSYSSTLSHLRRINSPIGREGKLAKPRQLHNSLWG 349

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            M+CP +TPEG+A GLVKNLALM  V+      P++       +E+LE +S   +    S 
Sbjct: 350  MICPAETPEGQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLEEISPSLI--AEST 407

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             +  NG+ +G HR P      +RKLRR   +   VSV  + + + + + +D GR  RPL 
Sbjct: 408  KIFLNGVWVGVHRDPADLVRTLRKLRRQCDVDSSVSVVHDIRLKELRLYTDYGRCTRPLF 467

Query: 606  IADKGIS-RIKEHHMKELLDGV---RSFDDFLREGLIEYLDVNEENNALIALYEGDATPD 661
            I D     RIK+ H++ L +      S+++ +  G IEY+D  EE   +I++   D    
Sbjct: 468  IVDDDQKLRIKKQHIELLTEKDVTGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAA 527

Query: 662  T-------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                          TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 528  RQSADRKTGVAIRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTN 587

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+M Y+GY+ ED+++MN+S
Sbjct: 588  YQIRMDTLGYVLFYPQKPLVTTRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQS 647

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            ++DRG  R +  + +    +K  + + +   RPDR      R             LDDDG
Sbjct: 648  AIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDK-------LDDDG 700

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            L     ++                            R+     +      ET ++D+V L
Sbjct: 701  LIYDSAVLS--------------------------KRFSKKDCSTGMKHAETGIIDQVLL 734

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             ++  G   +K  +R  R P++GDKFSSRHGQKG  G    QED PF+  GI PD+I+NP
Sbjct: 735  TTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNP 794

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMT+G+++E + GK     G+    + F        T E IS  L K G+   G 
Sbjct: 795  HAIPSRMTIGQLVECIMGKVAACMGKEGDATPFTPV-----TAEDISTMLHKCGYQKRGN 849

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y+G TG  L A IF+GP YYQ+LKHMV DK+H+RG GP  +LTRQP EGR+R+GGLR
Sbjct: 850  EVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLR 909

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDN 1128
             GEMERDC++++GA+  + ERLM  SD + + VC+ CGL+   N K +   C  CKN   
Sbjct: 910  FGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFEC--CKNPSE 967

Query: 1129 ISS---MKLPYACKLLIQELQSMNIVPRLKLA 1157
             +S   + +PYACKLL QEL SM I PRL  A
Sbjct: 968  RTSVVQVMVPYACKLLFQELMSMAIAPRLITA 999


>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
 gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
          Length = 1205

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1209 (34%), Positives = 636/1209 (52%), Gaps = 160/1209 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 23   DCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLR 82

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS------ 127
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I  + ++G       
Sbjct: 83   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 128  -----------------------HTE-KTTME----KNDVVIGRIPIMLRSCRCVLYGKD 159
                                   H E K TME    + ++ IG++PIML+S  C+L    
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   ++E R   A
Sbjct: 323  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQEKRVRYA 374

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALATGNWGEQ 491

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 492  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 551

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM  +T      P+I       +E LE    E   +PNS  V  NG+ +
Sbjct: 552  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKVFVNGVWV 609

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +  +KEH  K              E  +    +D  ++ G+IEY+D  EE   +I 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 653  LYEGD-------------ATPDTT------------------HIEIEPFTILGVIAGLIP 681
            +   D                DTT                  H EI P  ILG+ A +IP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+    + +++ H +      +DDDG+ +PG  +   D+ I K SPL      +   GQ
Sbjct: 910  MRS----DTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEEL---GQ 959

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQ 920
               ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  RTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1018

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   + ED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R + G A
Sbjct: 1019 KGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA 1076

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1077 ----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V
Sbjct: 1133 DKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRV 1192

Query: 1100 QVCRVCGLL 1108
             +C +CGL+
Sbjct: 1193 HICEICGLM 1201


>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
 gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
          Length = 1205

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1209 (34%), Positives = 636/1209 (52%), Gaps = 160/1209 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F++T ++++V    ++             DP +  
Sbjct: 23   DCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLR 82

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS------ 127
               L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I  + ++G       
Sbjct: 83   RYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 128  -----------------------HTE-KTTME----KNDVVIGRIPIMLRSCRCVLYGKD 159
                                   H E K TME    + ++ IG++PIML+S  C+L    
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 160  EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVT 212
            E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     I ++V 
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 213  SSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV 263
              +  +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 264  GRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---A 315
              D   +    +L P IEE     I  +E AL+++      S  GS P   ++E R   A
Sbjct: 323  CYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQEKRVRYA 374

Query: 316  FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
              I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 376  VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DV 434
            ++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+TGN+ + 
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALATGNWGEQ 491

Query: 435  KRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 494
            K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPE
Sbjct: 492  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 551

Query: 495  GEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLIL 554
            G+ACGLVKNLALM  +T      P+I       +E LE    E   +PNS  V  NG+ +
Sbjct: 552  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKVFVNGVWV 609

Query: 555  GKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----- 609
            G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D      
Sbjct: 610  GVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSE 669

Query: 610  ---GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIA 652
                +  +KEH  K              E  +    +D  ++ G+IEY+D  EE   +I 
Sbjct: 670  NSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIV 729

Query: 653  LYEGD-------------ATPDTT------------------HIEIEPFTILGVIAGLIP 681
            +   D                DTT                  H EI P  ILG+ A +IP
Sbjct: 730  MTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIP 789

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L
Sbjct: 790  FPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEFLKFREL 849

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P
Sbjct: 850  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKP 909

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R+    + +++ H +      +DDDG+ +PG  +   D+ I K SPL      +   GQ
Sbjct: 910  MRS----DTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEEL---GQ 959

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQ 920
               ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQ
Sbjct: 960  RTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1018

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   + ED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R + G A
Sbjct: 1019 KGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA 1076

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV 
Sbjct: 1077 ----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 1132

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEV 1099
            DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V
Sbjct: 1133 DKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRV 1192

Query: 1100 QVCRVCGLL 1108
             +C +CGL+
Sbjct: 1193 HICDICGLM 1201


>gi|329765755|ref|ZP_08257324.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            limnia SFB1]
 gi|329137821|gb|EGG42088.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            limnia SFB1]
          Length = 1115

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/1144 (34%), Positives = 622/1144 (54%), Gaps = 46/1144 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDV 85
            S V ++ ++ + LK  G+ +QHL+SF+ F+  G++ I+    +I +   +    ++   V
Sbjct: 4    SSVKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKV 63

Query: 86   RIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
            ++ QP M  +DG    + P   RL +++Y+AP+++    V+    +   +E   V IG +
Sbjct: 64   KLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVE----DGKILESRFVHIGDV 119

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            P+M +S  C+L+     +L   GE P DPGGYFII G+E+V++  E LS N++I+D +  
Sbjct: 120  PVMAKSNACILHNFSTQKLIEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRESV 179

Query: 205  GN---INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            G      A V SS    ++K  + M+  G +   +      IP++ + +A+G+ESD+E+ 
Sbjct: 180  GGNTVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIA 239

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
              V         L  S E+    D+ T + A+ Y+    KR   G     +  RA ++L 
Sbjct: 240  AAVSLVDEIQNELEGSFEKAG--DVPTAKDAIVYIS---KRIAPGMLEEFQIKRAETLLD 294

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++  H  N + K  ++     +++E  L   + DDKD+ GNK ++ +GQ+++ LF
Sbjct: 295  WGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADLF 354

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH 440
               F+ ++ +++  ++    K   ++   +S  I    IT  L   ++TGN+   R    
Sbjct: 355  RTAFRNLVRDMKYQLERSGQKRGINA---VSAAIRPGIITDKLNNAIATGNWGRGRV--- 408

Query: 441  RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
              G+TQ+L R +++ T+ H+ R+     +++     R L  + +G +CP +TPEG  CGL
Sbjct: 409  --GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGL 466

Query: 501  VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
            VKNLAL   ++ +     ++   Y LG   +     +E    +   +  +G ++G ++  
Sbjct: 467  VKNLALSGIISVNVPSEEIVEKLYDLGT--IHFFDAKEDVKKDGARIFVDGRLIGYYKDG 524

Query: 561  KCFADVMRKLRRAGKIGEFVSVFVNEKQ-----RCVYIASDGGRVCRPLVIADKGISRIK 615
               A+ +R LRR  KI   V +  ++ +     + +Y+  + GRV RPL+I       + 
Sbjct: 525  AQLAESLRDLRRNSKIHPHVGISFHKSEIEGSTKRLYVNCNAGRVLRPLIIIKDNKPLLT 584

Query: 616  EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
            +  + ++   + S+ D LR G++E +D NEE N  I L E D T   TH+E+ P  ILG 
Sbjct: 585  QDLLDKISKKLLSWTDLLRMGVLEMIDANEEENCYITLDEKD-TKKHTHLEVFPPAILGA 643

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             A +IPYP HNQSPRNTY+ AM KQ++G              +L++YPQ P++ T+ ++L
Sbjct: 644  GASIIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKL 703

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            +G +   AGQN  VAV+ + GY+IEDAIV++++S+DRG GR    + Y A  ++Y     
Sbjct: 704  LGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSRASVDRGLGRTFFFRIYDAEAKQYPGGMR 763

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            D    P+     AE     +       +L++DG+ A    +   D+ I K SP       
Sbjct: 764  DTFEIPN-----AEDNIRGYKGEKAYRLLEEDGVVASESPVHGGDILIGKTSPPR----F 814

Query: 856  MSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 914
            M    + +S     R T  G    ET VVD V +     G    K  +R  R PE+GDKF
Sbjct: 815  MEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDKF 874

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKGV G + + ED P++  GI PD+++NPH FPSRMTVG  +E + GKA    G 
Sbjct: 875  ASRHGQKGVLGILAKAEDLPYTADGISPDVLINPHAFPSRMTVGMFMESICGKAAALRGS 934

Query: 975  FHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
               GSAF       + +E +   +   GF Y+GK+ +Y G TG      +F+G +YYQKL
Sbjct: 935  QFDGSAF-----VGEKMEEVKPVMDAAGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQKL 989

Query: 1035 KHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSS 1094
             HMV DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +RL+  S
Sbjct: 990  HHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDES 1049

Query: 1095 DPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            D  ++ VC  CGL+ Y++ K +  +C  C +   +SS+ + YA KLL+QE+QS+N+ PRL
Sbjct: 1050 DKSDIFVCERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109

Query: 1155 KLAE 1158
             + E
Sbjct: 1110 LIKE 1113


>gi|393794931|ref|ZP_10378295.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosoarchaeum
            limnia BG20]
          Length = 1115

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/1145 (34%), Positives = 620/1145 (54%), Gaps = 48/1145 (4%)

Query: 27   SVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDV 85
            S V ++ ++ + LK  G+ +QHL+SF+ F+  G++ I+    +I +   +    ++   V
Sbjct: 4    SSVKRWPVIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKV 63

Query: 86   RIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
            ++ QP M  +DG    + P   RL +++Y+AP+++    V+    +   +E   V IG +
Sbjct: 64   KLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVE----DGKILESRFVHIGDV 119

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK 204
            P+M +S  C+L+     +L   GE P DPGGYFII G+E+V++  E LS N++I+D +  
Sbjct: 120  PVMAKSNACILHNFSTQKLIEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRESV 179

Query: 205  GN---INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            G      A V SS    ++K  + M+  G +   +      IP++ + +A+G+ESD+E+ 
Sbjct: 180  GGNTVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIA 239

Query: 261  QMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILR 320
              V         L  S E+    D+ T + A+ Y+    KR   G     +  RA ++L 
Sbjct: 240  AAVSLVDEIQNELEGSFEKAG--DVPTAKDAIVYIS---KRIAPGMLEEFQIKRAETLLD 294

Query: 321  DVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380
               L ++  H  N + K  ++     +++E  L   + DDKD+ GNK ++ +GQ+++ LF
Sbjct: 295  WGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADLF 354

Query: 381  EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-TVGLERTLSTGNFDVKRFKM 439
               F+ ++ +++      L +  +    +     +R  I T  L   ++TGN+   R   
Sbjct: 355  RTAFRNLVRDMKYQ----LERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRV-- 408

Query: 440  HRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 499
               G+TQ+L R +++ T+ H+ R+     +++     R L  + +G +CP +TPEG  CG
Sbjct: 409  ---GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCG 465

Query: 500  LVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            LVKNLAL   ++ +     ++   Y LG   +     +E    +   +  +G ++G ++ 
Sbjct: 466  LVKNLALSGIISVNVPSEEIVEKLYDLGT--IHFFDAKEDVKKDGARIFVDGRLIGYYKD 523

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQ-----RCVYIASDGGRVCRPLVIADKGISRI 614
                A+ +R LRR  KI   V +  ++ +     + +Y+  + GRV RPL+I       +
Sbjct: 524  GAQLAESLRDLRRNSKIHPHVGISFHKSEIEGSTKRLYVNCNAGRVLRPLIIIKDNKPLL 583

Query: 615  KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILG 674
             +  + ++   + S+ D LR G++E +D NEE N  I L E D T   TH+E+ P  ILG
Sbjct: 584  TQDLLDKISKKLLSWTDLLRMGVLEMIDANEEENCYITLDEKD-TKKHTHLEVFPPAILG 642

Query: 675  VIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIE 734
              A +IPYP HNQSPRNTY+ AM KQ++G              +L++YPQ P++ T+ ++
Sbjct: 643  AGASIIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHLMLYPQTPIVNTKAMK 702

Query: 735  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANST 794
            L+G +   AGQN  VAV+ + GY+IEDAIV++++S+DRG GR    + Y A  ++Y    
Sbjct: 703  LLGLEDRPAGQNCVVAVLPFDGYNIEDAIVLSRASVDRGLGRTFFFRIYDAEAKQYPGGM 762

Query: 795  SDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGS 854
             D    P+     AE     +       +L++DG+ A    +   D+ I K SP      
Sbjct: 763  RDTFEIPN-----AEDNIRGYKGEKAYRLLEEDGVVASESPVHGGDILIGKTSPPR---- 813

Query: 855  IMSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
             M    + +S     R T  G    ET VVD V +     G    K  +R  R PE+GDK
Sbjct: 814  FMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDK 873

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKGV G + + ED P++  GI PD+++NPH FPSRMTVG  +E + GKA    G
Sbjct: 874  FASRHGQKGVLGILAKAEDLPYTADGISPDVLINPHAFPSRMTVGMFMESICGKAAALRG 933

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                GSAF       + +E +   +   GF Y+GK+ +Y G TG      +F+G +YYQK
Sbjct: 934  SQFDGSAF-----VGEKMEEVKPVMDAAGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQK 988

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            L HMV DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +RL+  
Sbjct: 989  LHHMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDE 1048

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD  ++ VC  CGL+ Y++ K +  +C  C +   +SS+ + YA KLL+QE+QS+N+ PR
Sbjct: 1049 SDKSDIFVCERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPR 1108

Query: 1154 LKLAE 1158
            L + E
Sbjct: 1109 LLIKE 1113


>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
 gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1274

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1258 (34%), Positives = 646/1258 (51%), Gaps = 173/1258 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN-----DRIVSGIDP--SIFLRF 82
            D ++++  +  ++GLV Q +DSFN F    ++ ++        D    G D    I LR 
Sbjct: 47   DSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDDGRDIILRR 106

Query: 83   KDVRIGQ-----PSMT-VDGVSEKLNPHMCRLSDMTYAAPI------------------- 117
             DV  G+     P++T   G +  L P+ CR  ++TY+API                   
Sbjct: 107  YDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPLN 166

Query: 118  -LVNIEYVQGSHT----------------------EKTTME--KNDVVIGRIPIMLRSCR 152
             L + E+   + T                      +K   E  K  + +G+IPIM++S  
Sbjct: 167  QLTDDEHDHMARTGEHPTVLRWIEEESAPPEPPKEDKVNAENLKGYLFLGKIPIMVKSKI 226

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINA 209
            C LY +D+  L  L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A
Sbjct: 227  CHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQA 286

Query: 210  SVTSSTE---------TVKSKTVIQMEKGKMY----LLLNQFVKKIPIMVVMKAMGMESD 256
             + S+ E          ++  T     KG++     + L    +++ + +V +A+G+ SD
Sbjct: 287  EIRSALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSD 346

Query: 257  QEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++++  +  D R S +L    P IEE     I  +E AL+Y+ GK      G   N R  
Sbjct: 347  EDILNHICYDRRDSQMLEALRPCIEEA--FCIQDREVALDYI-GKRGNGGAGVNRNARIK 403

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  +L+   L ++         K F++  M+ ++++ +L +   DD+D+ G KRL+L+G
Sbjct: 404  AAKDMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463

Query: 374  QLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
             L++ LF  + + +  ++    ++ VD        +  F L+  I   ++T GL+ +L+T
Sbjct: 464  PLLAKLFRGIVRRLTQDLMGYMKRCVDT-------NKHFSLALGIKASTLTNGLKYSLAT 516

Query: 430  GNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            GN+ D K+      G++QVL R +F  TL H+ R +    +  K++ P            
Sbjct: 517  GNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKP------------ 564

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
              +TPEG+ACGLVKNL+LM  V+      P+I       +E LE    E L  PN+  V 
Sbjct: 565  -PETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMVARNMEVLE--EYEPLRYPNATKVF 621

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA- 607
             NG  +G H+ PK    +++ LRR   I   VS+  + + R   I SD GRV RPL    
Sbjct: 622  VNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVE 681

Query: 608  --DKGISRI--------KEH-----HMKEL---LDGVRSFDDFLREGLIEYLDVNEENNA 649
              D G S +        KEH       KEL    +    +   L  G IEYLD  EE  A
Sbjct: 682  QEDNGESGVEKGQLILTKEHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETA 741

Query: 650  LIAL-----------------YEGDAT------------PDT---THIEIEPFTILGVIA 677
            +I +                 +E DA             P T   TH EI P  +LG+ A
Sbjct: 742  MICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICA 801

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + 
Sbjct: 802  SIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLK 861

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++
Sbjct: 862  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQ 921

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +PDR+     +             L++DG+ APG  +  +D+ I K SP+      + 
Sbjct: 922  FEKPDRSNTLRPKHGTYDK-------LENDGIIAPGIRVTGDDIIIGKTSPINPDNQEL- 973

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
              GQ  +++     +      E+ +VD VA  ++++G   +K  +R T+ P++GDKF+SR
Sbjct: 974  --GQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASR 1031

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K G   G    
Sbjct: 1032 HGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGSLKGMEGD 1091

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
             + F +      TV+S+S  L +HG+   G +++Y G TG  L+A +F GP YYQ+L+HM
Sbjct: 1092 ATPFTDV-----TVDSVSNLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRHM 1146

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1097
            V DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F
Sbjct: 1147 VDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAF 1206

Query: 1098 EVQVCRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             V +C +CGL+    +  K    C  CKN   I+ + +PYA KLL QEL SMNI  R+
Sbjct: 1207 RVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSMNIASRM 1264


>gi|340344216|ref|ZP_08667348.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            koreensis MY1]
 gi|339519357|gb|EGP93080.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            koreensis MY1]
          Length = 1115

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/1143 (34%), Positives = 619/1143 (54%), Gaps = 48/1143 (4%)

Query: 29   VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI-VSGIDPSIFLRFKDVRI 87
            V ++ ++ + LK  G+ +QHL+SF+ F+  G++ I+    +I +   +    ++   V++
Sbjct: 6    VKRWPIIQDILKREGIARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKL 65

Query: 88   GQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPI 146
             QP M  +DG    + P   RL +++Y+AP+++    V+    +   +E   V IG +P+
Sbjct: 66   QQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVVE----DGKILESRFVHIGDVPV 121

Query: 147  MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN 206
            M +S  C+L+     +L   GE P DPGGYFII G+E+V++  E LS N++I+D +  G 
Sbjct: 122  MAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRESVGG 181

Query: 207  ---INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
                 A V SS    ++K  + M+  G +   +      IP++ + +A+G+ESD+E+   
Sbjct: 182  NTVFKAKVYSSIVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAA 241

Query: 263  VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDV 322
            V         L  S E+    D+ T + A+ Y+    KR   G     +  RA ++L   
Sbjct: 242  VSLVDEIQNELEGSFEKAG--DVPTAKDAIVYIS---KRIAPGMLEEFQIKRAETLLDWG 296

Query: 323  FLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382
             L ++  H  N + K  ++     +++E  L   + DDKD+ GNK ++ +GQ+++ LF  
Sbjct: 297  LLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADLFRT 356

Query: 383  LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-TVGLERTLSTGNFDVKRFKMHR 441
             F+ ++ +++      L +  +    +     +R  I T  L   ++TGN+   R     
Sbjct: 357  AFRNLVRDMKYQ----LERSGQKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRV---- 408

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G+TQ+L R +++ T+ H+ R+     +++     R L  + +G +CP +TPEG  CGLV
Sbjct: 409  -GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLV 467

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNLAL   ++ +     ++   Y LG   +     +E    +   +  +G ++G ++   
Sbjct: 468  KNLALSGIISVNVPSEEIVEKLYDLGT--IHFFDAKEDVKKDGARIFVDGRLIGYYKDGA 525

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQ-----RCVYIASDGGRVCRPLVIADKGISRIKE 616
              A+ +R+LRR  KI   V +  ++       + +Y+  + GRV RPL+I       + +
Sbjct: 526  ELAESLRELRRNSKIHPHVGISFHQSAIEGSTKRLYVNCNAGRVLRPLIIIKDNKPLLTQ 585

Query: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
              + ++   + S+ D LR G++E +D NEE N  I L E D+    TH+E+ P  ILG  
Sbjct: 586  DLLDKISKKLLSWTDLLRMGVLEMIDANEEENCYITLDEKDSK-KHTHLEVFPPAILGAG 644

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IPYP HNQSPRNTY+ AM KQ++G              +L++YPQ P++ T+ ++L+
Sbjct: 645  ASIIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKLL 704

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
            G +   AGQN  VAV+ + GY+IEDAIV+++SS+DRG GR    + Y A  ++Y     D
Sbjct: 705  GLEDRPAGQNCVVAVLPFDGYNIEDAIVLSRSSVDRGLGRTFFFRIYDAEAKQYPGGMRD 764

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
                P+     AE     +       +L++DG+ A    +   D+ I K SP       M
Sbjct: 765  AFEIPN-----AEDNIRGYKGEKAYRLLEEDGVVASESPVHGGDILIGKTSPPR----FM 815

Query: 857  SPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
                + +S     R T  G    ET VVD V +     G    K  +R  R PE+GDKF+
Sbjct: 816  EEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDKFA 875

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKGV G + + ED P++  GI PD+++NPH FPSRMTVG  +E + GKA    G  
Sbjct: 876  SRHGQKGVLGILAKAEDLPYTADGISPDVLINPHAFPSRMTVGMFMESICGKAAALRGSQ 935

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
              GSAF       + ++ +   +   GF Y+GK+ +Y G TG      +F+G +YYQKL 
Sbjct: 936  FDGSAF-----VGEKMDEVKPVMDAAGFKYSGKETMYDGRTGKSFPVDVFIGVVYYQKLH 990

Query: 1036 HMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSD 1095
            HMV DK+HAR  G   MLT+QPTEGRAR GGLR GEMERDCLIAYGASM++ +RL+  SD
Sbjct: 991  HMVADKIHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESD 1050

Query: 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLK 1155
              ++ VC  CGL+ Y++ K +  IC  C +   +SS+ + YA KLL+QE+QS+N+ PRL 
Sbjct: 1051 KSDIFVCERCGLVAYHDVKQRKYICRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRLL 1110

Query: 1156 LAE 1158
            + E
Sbjct: 1111 IKE 1113


>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
 gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
          Length = 1209

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1230 (32%), Positives = 639/1230 (51%), Gaps = 129/1230 (10%)

Query: 24   PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFK 83
            P +  +D + L+  + +   ++KQ L+SFN FV   ++ IV     IV          FK
Sbjct: 5    PSQKKIDTWPLVSSYFEENSIIKQQLESFNDFVQNKMQDIVDDLPPIVVSYKVDKLTDFK 64

Query: 84   D---------VRIGQPSMTV------DGVSEKLNPHMCRLSDMTYAAPILVNIEY----V 124
            +         +R+GQ  ++       DGV   L P+  RL  ++Y++P+  +I      V
Sbjct: 65   ENFLQNMKKILRLGQLHLSKPTFIEEDGVIHTLLPNEARLRSLSYSSPLYCDISVTTVNV 124

Query: 125  QGSHTEKTTM----EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
               H ++  +    EK  +++GRIPIM++S  C+L       L  LGEC LD GGYFII 
Sbjct: 125  TNEHEKERELNFKQEKQKILLGRIPIMIKSRFCILDKLLPMTLQNLGECNLDLGGYFIIN 184

Query: 181  GTEKVLLIQEQLSKNRVIIDTDKKGNINA-----------------SVTSSTETVKSKTV 223
            G+EKV++ QE+++ N V +   KK N +                  S++   +   S T+
Sbjct: 185  GSEKVIVAQEKMAWNYVYVFEKKKENNSVDKSFFLDLKNLFFAECRSISEFGKWSPSLTI 244

Query: 224  IQM-------------------EKGKMYL--LLNQFVKKIPIMVVMKAMGMESDQEVVQM 262
            I++                     GK Y+  +L  F   +P+  + KA+G E + E++  
Sbjct: 245  IKICLNKFRKKKIAKKENSFSHFTGKFYIRVVLPYFKSDVPVTWIFKALGFEDETEIIPY 304

Query: 263  VGRDPRYSAL--LLPSI------------EECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
            +  D     L  L+ +I             +C  LD   QE +L  +   + +++ G+  
Sbjct: 305  ICYDNTNENLIELVRNILKDDHFVPDNLKNDCFRLD---QETSLALIGQHIFKASHGT-- 359

Query: 309  NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
              R   A+ IL+  FL +V +       K F+   M+ +++   L    +DD+D+ G KR
Sbjct: 360  --RIRYAYEILQREFLPHVGIGQGFELRKGFFFGYMVNKLLLVQLGNKKVDDRDHYGYKR 417

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS--RSSRFDLSQFIVRDSITVGLERT 426
            L+    L+S+LF  L    +++  K + + L K +    + F +S     + IT G+  +
Sbjct: 418  LDTVSPLLSVLFRQL----VNKATKDLRMSLEKKTNLEKNTFQISDIFKFNLITTGMFYS 473

Query: 427  LSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
            L+TGN+      M + G++QVL R++++ TL H+ +++       K++ PR L  + WG+
Sbjct: 474  LATGNWSTNGQTM-KTGVSQVLNRINYMSTLSHLRKINSTGINVSKLTKPRQLHNTYWGL 532

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN--- 543
            +CP +TPEG +CGLVKNLA+  ++T      P+        +E+L++ +  E+   N   
Sbjct: 533  ICPVETPEGHSCGLVKNLAISAYITLGSSSMPVFEF-----LEELKIKNFNEIKVQNIRF 587

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP 603
             + +  N   +G + +P   A  +R  RR+G   + +SV +  K + + I +D GRVCRP
Sbjct: 588  YYKIFLNDCWIGVYDKPDTIAKTLRCFRRSGNTNQELSVIIFHKDKEIKIYTDAGRVCRP 647

Query: 604  LVIAD------------KGISRIKEHHMKELLDGVR-SFDDFLREGLIEYLDVNEENNAL 650
            L++++            K IS + +++   L  G + +F + +R GLIE++D  EE   +
Sbjct: 648  LIVSELVKFNKKNQYIVKSIS-VNQYNFDVLTIGNKCTFTELIRNGLIEFIDAEEEKTCV 706

Query: 651  IALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
            I +Y  +   +       TH EI P  I+G+ A  IP+ HHNQSPRNTYQ AMGKQ++G 
Sbjct: 707  IGMYVFEGIKNINNLITFTHFEIHPSMIMGICASFIPFSHHNQSPRNTYQAAMGKQSIGI 766

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
             + N   RMD++ ++L YPQ+PL+TTR +          G NA VA   Y+GY+ ED+I+
Sbjct: 767  YSLNFQHRMDTMAHILYYPQKPLVTTRFLNYSASKNFPNGINAIVATACYTGYNQEDSII 826

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            M++ S+DRG  R +  + Y    +K  N   +    P+++     ++            L
Sbjct: 827  MSQDSIDRGLFRSVFYRCYRDEEKKKTNGFKETFEIPNKSECIGLKIGSYEK-------L 879

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            D DG    G  I   DV I K  P     S         +       +    + E  VVD
Sbjct: 880  DLDGFVQEGSRISGEDVIIGKTVPFTNGISQKKILKFKKNPKYKKDASILARNCEVGVVD 939

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            ++ + + + G+  +K  IR  R P++GDKF+SRHGQKG+ G   +Q D PF+  G+ PD+
Sbjct: 940  KIMIGTSEYGNRLVKIRIRSIRIPQVGDKFASRHGQKGILGMAYKQYDLPFTTEGMSPDI 999

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            IMNPH  PSRMT+G + E L  K     G    G+ F   S     +E I + L  +G+ 
Sbjct: 1000 IMNPHAIPSRMTIGHVYECLLAKISAISGIEGDGTPFSSIS-----IEKIMKHLKNYGYD 1054

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
             +G + + +G TG  L+  IF+GP YYQKLKHMV DK+H+R  GP  +LTRQP EGR+R 
Sbjct: 1055 KSGWEAMINGFTGKFLKNLIFIGPTYYQKLKHMVDDKIHSRSRGPVQILTRQPVEGRSRY 1114

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR GEMERDC++++G+ + + +RL+  SDPF + VC +CGL+   N KLK   C +C 
Sbjct: 1115 GGLRFGEMERDCILSHGSIVFLKDRLLDQSDPFVIFVCDLCGLIAIGNRKLKIFECRSCD 1174

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            N   IS +K+PYACKLL+QEL +++I PR+
Sbjct: 1175 NKMFISLIKIPYACKLLLQELIALSIGPRM 1204


>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1177

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1198 (34%), Positives = 644/1198 (53%), Gaps = 110/1198 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-------------- 75
            D + ++ +F + RGLVKQ L S+N F+N  +  ++     I    D              
Sbjct: 20   DMWMVISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKIKMDFNSN 79

Query: 76   -------PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV-QGS 127
                    +I + F    + +P+ T +G  ++L P + RL  ++Y+  +  +I  V   S
Sbjct: 80   DDDEDQGKTIHISFGTSTVLRPT-TPEG--KQLTPMISRLRSLSYSLILRSDIRVVVMDS 136

Query: 128  HTEKTTMEKNDVVIGRIPIMLRSCRCVL--YGKDEAELARLGECPLDPGGYFIIKGTEKV 185
            +     ++ + V I ++P+M+RS  C L  +  D A    L EC  DPGGYFI+ G+EKV
Sbjct: 137  NKNMKQLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGSEKV 196

Query: 186  LLIQEQLSKNRVIIDTDK---KGNINASVTSSTET-----------VKSKTVIQMEKGKM 231
            ++ QE +  N+ I    K   K ++   + S  +            + + T  Q E+  +
Sbjct: 197  IIGQEHMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLLAPTAKQPER-PI 255

Query: 232  YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA---LLLPSIEECANLDIYTQ 288
            +  L++  K IP+ ++ +A+  + D+E++ ++  DP  S    +L PSIEE ++   +  
Sbjct: 256  HAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVLRPSIEESSS---FLD 312

Query: 289  EKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRM 348
            ++A     GK + S      + R  +A  +L +  L ++    ++   K F++  M   +
Sbjct: 313  DRACLDFVGK-RCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNL 371

Query: 349  VEAMLNKDAMDDKDYVGNKRLELSG----QLVSLLFEDLFKTMISEVQK-----TVDIIL 399
            +  +L +   DD+D+  NKRL+L+G    QL +LLFE + K++   ++K      +D + 
Sbjct: 372  INVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLEKRLKDGNIDQMA 431

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGH 459
               +  +R  +  F    SIT GLE ++ TGN+ V+R    + G++Q+L RL+F+ TL +
Sbjct: 432  KSAADLTRQGVLNF---KSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLNRLTFLSTLSN 488

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE--EG 517
            + R +    +  K++GPR L  + WG +CP +TPEG++CGL+KNLALM+ VT + E   G
Sbjct: 489  LRRTNTPIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLALMSIVTVNRELEAG 548

Query: 518  PLIS-LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
              I+ +    G   ++ ++ +++ +  S  +  NG   G H       + +   RR+ KI
Sbjct: 549  DAITRILEDTGTIPIQQITPDQIKD--STKIFLNGAWYGIHTDAYDLMETLLSERRSLKI 606

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREG 636
               VS   + + + ++I +DGGR+ RP++I +     +K+     L D   ++     +G
Sbjct: 607  PSDVSFVHHIRDQEIFIWTDGGRITRPVLIVNDMHLTLKK---SVLYDENTNWKVLRYKG 663

Query: 637  LIEYLDVNEENNALIALYEGDATPDT---------THIEIEPFTILGVIAGLIPYPHHNQ 687
            ++EYLD++EE   LIAL   D   +          TH EI P  I GV   +IP+P HNQ
Sbjct: 664  MVEYLDIDEEETKLIALSPADLEENRNSPTGVKTYTHCEIHPSLIFGVCGTIIPFPDHNQ 723

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQCAMGKQA+G    N + RMDS  ++L YPQ+PL+ TR +  + ++KL AG N 
Sbjct: 724  SPRNTYQCAMGKQAIGLYTTNYMIRMDSSSHVLWYPQKPLVATRNMRYLNFNKLPAGINV 783

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR-PDRTGP 806
            TVA+  Y+GY+ ED++++N S++DRG  R    + Y    +      +  +   PD   P
Sbjct: 784  TVAICCYTGYNQEDSLMLNASAIDRGLFRSYFFRTYKETAEGDGTEGASEVFTFPD---P 840

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
               +   +H S+ +    D DGLA PG ++   DV I K SP        SPT     +Y
Sbjct: 841  QTVKGIKLHDSSKI----DADGLAIPGAVVSAQDVIIGKISP-------DSPTELDHRQY 889

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
            +      +    ET VVD V     K      +   R  RRPE+GDKF SRHGQKGVCG 
Sbjct: 890  KDTSCVVRP--METGVVDLVLRTITKKNLQLARVRTRQMRRPEIGDKFCSRHGQKGVCGM 947

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED PF+  G+ PD+IMNPH  PSRMT+G +IE L GK    C      +A     G
Sbjct: 948  TYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLIECLLGK----CTAIDPQNA---DEG 1000

Query: 987  HAD-----TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             A      TV++I++ L   GF   G + +Y+G +G  L+A I+ GP YYQ+LKHMV DK
Sbjct: 1001 DATPFCGVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQRLKHMVGDK 1060

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
             HAR  G + ++ RQP +GRARNGGLR GEMERDCLIA+G S ++ +RL+ +SD + V V
Sbjct: 1061 AHARALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLENSDRYFVPV 1120

Query: 1102 CRVCGLLGYYNHKLKAGI-CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            C+ CGL+     K    + C  C++   ++ +++PYA KL+IQEL SM I PRL L E
Sbjct: 1121 CKTCGLIAI--EKTDGTMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPRLNLIE 1176


>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1729

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/1127 (35%), Positives = 609/1127 (54%), Gaps = 94/1127 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSI 78
            D + ++  F K +GLV+Q LDSF+ F++  I +++     +   ++           P  
Sbjct: 37   DTWVVIRSFFKNKGLVRQQLDSFDDFISLTIPELISEQGTLELKVERQFLDADEVAPPRY 96

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
             + F ++ I  P++T  DG +  L P+  RL ++TYA  + VN++     + E    E  
Sbjct: 97   VVSFDNIFISHPTITESDGYNHALFPNEARLRNLTYACRLYVNLKREMFRYDENGVEEPP 156

Query: 138  DVVI------GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            +V I      G+IP+MLRS  C L+ K + EL ++ ECP D GGYF+I G+EKVL+ QE+
Sbjct: 157  EVKILDKVYLGQIPMMLRSKNCALFNKKDYELEKMNECPYDQGGYFVINGSEKVLIAQER 216

Query: 192  LSKNRVIIDTDK---KGNINASVTSSTET-------------VKSKTVIQMEKGKMYLLL 235
            ++ N V +   K   K +  A + S+ ET              + ++  +    ++   L
Sbjct: 217  MANNNVYVFHRKPPAKYSYVAEIRSALETGHRPANTLYTKMLTRGQSKGESAGNRIQCTL 276

Query: 236  NQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKAL 292
                  IPI+VV +A+G  SD++V+  V    +D     +L  S+EE   L I  Q  AL
Sbjct: 277  PYIKTDIPIVVVFRALGFVSDRDVLDHVIYDYQDQEMMEMLRFSLEEA--LPIQEQPVAL 334

Query: 293  EYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVE 350
            +++   G V+    G+   +R   A  IL+   L +V V +++   K ++   ++ R+++
Sbjct: 335  DFIGKRGLVQ----GATRENRIRYAKEILQKELLPHVGVTDHSETKKAYFFGYIVHRLLQ 390

Query: 351  AMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL 410
            A L +  +DD+D+ GNKR +L+G LV  LF  LF+ +I +V+ ++   + K      F+L
Sbjct: 391  AALGRRELDDRDHYGNKRCDLAGALVGGLFRLLFRKLIKDVKASLQKDVDK---RHEFNL 447

Query: 411  SQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
                    I+ GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ R++    +
Sbjct: 448  LAAFKAKIISDGLRYSLATGNWGDAKKAHESRAGVSQVLNRLTYASTLSHLRRLNSPIGR 507

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR LQ +QWG++CP +TPEG+ACGLVKNLALM +++       +I        E
Sbjct: 508  EGKLAKPRQLQNTQWGVMCPAETPEGQACGLVKNLALMAYISVGSPALHIIEFLEEWATE 567

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
            +LE  + + +       V  NG  +G H +       + +LR+   I   +S+  + ++R
Sbjct: 568  NLEETTPQSILQSTKIFV--NGCWVGIHAQANELVRTLAQLRQRTDISPEISIVPDIRER 625

Query: 590  CVYIASDGGRVCRPL-VIADKGISRIKEH-----------HMKELLDGVRSFDDFLREGL 637
             + I SD GR  RPL V+ D+ +S  +EH              E +D    + + +  G+
Sbjct: 626  ELRIYSDAGRAMRPLFVVEDERLSIRREHIDALKQAAQADRAGEHIDNPMRWPELITTGV 685

Query: 638  IEYLDVNEENNALIALY-----------EGDATPDTTHIEIEPFTILGVIAGLIPYPHHN 686
            IEY+D  EE   +IA++            G      TH EI P  ILGV A +IP+P HN
Sbjct: 686  IEYIDTQEEETRMIAMHPEDLDYARREGRGAYCSTHTHCEINPAMILGVCASIIPFPDHN 745

Query: 687  QSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQN 746
            QSPRN YQ AMGKQAMG    N   R+D++ + L YPQ+PL TTR++E + +D L AG N
Sbjct: 746  QSPRNCYQSAMGKQAMGVYISNFQVRLDTMSHTLYYPQKPLTTTRSMEYLHFDSLPAGMN 805

Query: 747  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP 806
            A VA+  YSGY+ ED++VMN+S++DRG  R +  + Y    +       D     +   P
Sbjct: 806  AIVAISVYSGYNQEDSVVMNQSAIDRGLFRSLFYRSYKDEVKPAGLDVGDE----EFEKP 861

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
              E +  + HS+     LD DGL APG  +  +D  I K +P+    + ++   QT  RY
Sbjct: 862  SLEIVAGMRHSSYDK--LDADGLVAPGTRVSGDDFIIGKTTPIPDEKNELA---QTMKRY 916

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
            R    +      E  +VD V L  +++G   +K  +R  R P++GDKF+SRHGQKG CG 
Sbjct: 917  RKRDASTALRSTENGIVDTVMLSVNEDGHRFVKVRVRGIRIPQIGDKFASRHGQKGTCGI 976

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED P++  GI PD+I+NPH  PSRMT+G +IE L GK     G+    + F     
Sbjct: 977  TYRQEDMPYNAEGITPDIIINPHAIPSRMTIGHLIECLQGKVAALTGKIGDATPFNTDV- 1035

Query: 987  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
               TV+SI++ L +  +   G +++++G TG  +   ++ GP YYQ+LKHMV DK+H+R 
Sbjct: 1036 ---TVKSIADLLKEFRYHPYGNEVLFNGHTGKKMNTQVYFGPTYYQRLKHMVDDKIHSRQ 1092

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCL-------IAYGASMLI 1086
             GP   LTRQP EGRAR+GGLR GEMERDCL       +A G SM I
Sbjct: 1093 RGPLTNLTRQPVEGRARDGGLRFGEMERDCLHGDARVTLATGVSMRI 1139



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 49/80 (61%)

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            +C+IA+GA+  + ERL   SD   V VC +CGL+   N K     C  C+N   IS + L
Sbjct: 1639 NCMIAHGAAQFLRERLFEQSDFSRVHVCDICGLIAIANLKKNEFECRACRNKTQISQIFL 1698

Query: 1135 PYACKLLIQELQSMNIVPRL 1154
            PYA KLL QEL SM+I PRL
Sbjct: 1699 PYAAKLLFQELMSMSIAPRL 1718


>gi|322510564|gb|ADX05878.1| putative DNA-directed RNA polymerase [Organic Lake phycodnavirus 1]
          Length = 1164

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1191 (33%), Positives = 640/1191 (53%), Gaps = 100/1191 (8%)

Query: 29   VDKFQLLPEFLK---VRGLVKQHLDSFNYFV-NTGIRKIVRANDRIVSGIDPSIFL---- 80
             D + ++  + K   ++ LVK  +DS+N FV N  I+ I   N  I+    P  +L    
Sbjct: 7    TDSWSVIESYFKNTHLQQLVKHQVDSYNDFVQNQLIKTIEMFNPLIIKS--PHDYLPEYK 64

Query: 81   --------RFKDVRIGQPSMTVDGVSEKLN-PHMCRLSDMTYAAPILV--NIEYV--QGS 127
                     F ++ I +P +  +  S KL  P   RL   TY++   +  NI+Y   +G+
Sbjct: 65   KYRLEVEINFVNLSIYRPEIHENNGSSKLMFPSDARLRSFTYSSNFTLDMNIKYTIRKGA 124

Query: 128  HTEKTTMEK---NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
            + E    +    + +  G+IPIML SC CVL          + EC +DPGGYFII G+EK
Sbjct: 125  NLENEEFKHIHLSKIQFGKIPIMLNSCICVLKQYPHIHPDNIDECKMDPGGYFIINGSEK 184

Query: 185  VLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLN-------- 236
              L QE+ + N+V     K+ N     T+   +V     I  ++  +Y++LN        
Sbjct: 185  TCLGQEKTADNKVFCFKQKQSN-KWLWTAEFRSVPDWKCISPKQ--IYMMLNSKLSAYGH 241

Query: 237  -------QFVKKIPIMVVMKAMGMESDQEVVQMV----GRDPRYSALLLPSIEECANLDI 285
                   +  K IP+ V+ +A+G+ESD+++  ++     ++ +    L  SI E A  + 
Sbjct: 242  DILVQLPRLKKPIPLFVLFRALGIESDKKICNIILLNSNKESKLLEYLKASIYEGAEYNN 301

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
            Y  E AL+Y+   V  +      ++   +     +DV   ++  H      K + +  M 
Sbjct: 302  Y--EDALQYIISNVIYTPINMDKDEGHRKKTEFAKDVLSNDLFPHCKTKEEKIYLLGFMT 359

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
            ++++ A    +   D+D   NKR+EL+G L++ LF + F  ++ ++QK V   ++  S  
Sbjct: 360  KKIILAYSGIEKQTDRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQVIREINNGSWK 419

Query: 406  SRFD---------LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGT 456
            S  D         + + +   +I  GL+R LSTG+F +K    ++ G+ QVL RL+++ T
Sbjct: 420  SSEDYFNIITLTNIYKIVKSTTIENGLKRALSTGDFGIKSMNTNKVGVAQVLNRLTYLST 479

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ RV+   +KS K+  PR L  S WG LCP +TPEG++ G+VKN++ MT+V+T  + 
Sbjct: 480  LSHLRRVNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNISYMTNVSTYSDS 539

Query: 517  GPLISLC--YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
             P+      Y   ++  E    E+ ++     V  NG  +G    P      +++ +  G
Sbjct: 540  TPIYEFIKPYLYPLDHYET---EDFYD--KVKVFVNGRWIGITHNPITLFKDLKQKKHNG 594

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFL- 633
             I  + S+  N + + +Y+ +D GR+ RPL         +  + ++ L +   S+ D L 
Sbjct: 595  MIHIYCSIVFNYQNKEIYVCNDCGRLVRPLFKVKNNKILLTNNTIQRLKEDELSWRDLLL 654

Query: 634  ----REGLIEYLDVNEENNALIALYEGDATPDT--THIEIEPFTILGVIAGLIPYPHHNQ 687
                 E +IEY+D  E+NN++I +       +   TH EI P TI GV+A  IP+P HNQ
Sbjct: 655  PLNIDESIIEYIDSAEQNNSMICMKPNQFKEEYNYTHCEIHPSTIFGVLASCIPFPQHNQ 714

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQCAMGKQA+G    N   RMD   Y+L Y  RPL+ TR + ++  ++L  G   
Sbjct: 715  SPRNTYQCAMGKQAIGIYVSNFNKRMDKTAYILNYTMRPLVETRVMNMMKLNQLPCGNQV 774

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+M++ GY+ ED+++ N+ SLDRG     +       ++K  N   +  ++P+   P 
Sbjct: 775  IVAIMTHGGYNQEDSLLFNRGSLDRGLFHATIYHTEKDEDKK-INGEEELRVKPN---PN 830

Query: 808  AER-MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
              R M+  ++  +     +  G+    E+I+  D+ I+K   ++   +  +   + + + 
Sbjct: 831  ITRNMKFGNYDKI-----NKQGVIDENELIEDKDIIISKVVVIKENKNDNTKLIKYEDQS 885

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRPELGDKFSSRHGQKGV 923
            +S R T      E C VD+  +  D+NGD    C K  +R TR+P +GDKFSSRHGQKG 
Sbjct: 886  KSYRTT------EECYVDKNYI--DRNGDGHTFC-KVRVRSTRKPNIGDKFSSRHGQKGT 936

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
             G I+ +ED P+++ G+ PD+I+NPH  PSRMT+ ++ E L GK  +  G F  G++FGE
Sbjct: 937  IGNIINEEDMPYTKDGLRPDIIINPHAIPSRMTIAQLKETLIGKLLLKLGLFGDGTSFGE 996

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
                   +E + + L KH +   G +++Y G TG  ++  IF+GP+YYQ+LKHMV DK H
Sbjct: 997  MD-----MEEVFKELKKHDYESRGNELLYDGKTGEQIETSIFIGPVYYQRLKHMVNDKQH 1051

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            +R  GP V LTRQP EGR+R+GGLR GEMERDC+I++GAS    ER+   SD + V VC+
Sbjct: 1052 SRCIGPMVNLTRQPAEGRSRDGGLRFGEMERDCMISHGASKFTKERIYDVSDKYAVNVCK 1111

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
             CG++  YN K    +C+ C+N  + S++K+PY+CKLL QEL +MNIVPR+
Sbjct: 1112 KCGMIAVYNDKEHIHLCNVCENRTDFSNVKIPYSCKLLFQELITMNIVPRI 1162


>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
 gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
          Length = 1276

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1265 (32%), Positives = 654/1265 (51%), Gaps = 168/1265 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID----PSIF------ 79
            D + ++  +   +GLV Q +DS+N F  + I+ IV  ++  V  +D    P  F      
Sbjct: 30   DCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIV--DEYSVLTLDNPNPPDTFEGKPIR 87

Query: 80   LRFKDVRIG-----QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI------------ 121
            LR  ++ +G     QP++   DG    L P+ CR  ++TY+ P+ V +            
Sbjct: 88   LRRYEIMLGNILVTQPTVKETDGKVSTLVPYECRDRNLTYSCPLYVKLTKKVNVAVEEDI 147

Query: 122  ----------EYVQGSHTEKTTME--------------------KNDVVIGRIPIMLRSC 151
                      E +Q ++   TT+                      + + IG+IP+M++S 
Sbjct: 148  PLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDEKISGEKMADMIYIGKIPVMVKSR 207

Query: 152  RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----- 206
             C L  + E+EL  L ECP D GGYFII G+EKVL+ QE+ + N V +    + N     
Sbjct: 208  ICYLRSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPNKYLYQ 267

Query: 207  --INASVTSSTETVKSKTVIQMEKGK---------MYLLLNQFVKKIPIMVVMKAMGMES 255
              I +++   +  V + T+    KG          ++L L      +PI +V +A+G+ S
Sbjct: 268  AEIRSALEKGSRLVSTLTMKLTSKGDSTRGSFGQTIHLNLPYTSGDLPIAIVFRALGVVS 327

Query: 256  DQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            D++++  +     D +   +L PSIEE     I  +E AL+++  +V +   G   N R 
Sbjct: 328  DEDILNHIVLDKNDTQMLEMLRPSIEEA--FCIQDREVALDFIAKRVGKD--GGHSNSRH 383

Query: 313  GRAFSILRDVFLANVPVHNNNFRP----KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
             R   + RD+   +   H +        K F++  M+ ++++  L +  +DD+D+ G KR
Sbjct: 384  LR-LKVARDILQKDTLPHISQAEGCETRKAFFLGYMVHKILQCALGRRDVDDRDHFGKKR 442

Query: 369  LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            L+L+G L++ LF  + + + +++   +   +        FDL+  +  +++T GL+ +L+
Sbjct: 443  LDLAGPLLAKLFRGIIRKLTNDMMGGLRRCIDA---GRDFDLTASLKPNTLTNGLKYSLA 499

Query: 429  TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
            TGN+ D K+      G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++
Sbjct: 500  TGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLV 559

Query: 488  CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
            CP +TPEG+ACGLVKNL+LM  V+      P+       G   +++L   E  N +S   
Sbjct: 560  CPAETPEGQACGLVKNLSLMCMVSVGTPAEPIYDFLVARG---MDVLEEYEPSNSSSTSK 616

Query: 548  IF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            IF NG  +G   + +   D++  LRR  ++   VS+  + ++    I SD GRV RPL +
Sbjct: 617  IFINGTWVGVANKIEELVDLVYDLRRKSRVDPEVSLIHDVREGEFRIFSDAGRVMRPLFV 676

Query: 607  ADK-----------GISRIKEHHMKELLD----------GVRSFDDFLREGLIEYLDVNE 645
             ++            +   KEH  K   D          G   +     +G+++ +D  +
Sbjct: 677  VNQKDDPRTGAQAGSLVLTKEHVAKLHADKDNNLSPGDEGHYGWQGLKSDGVLDLMDAEQ 736

Query: 646  ENNALI-----------ALYEGDATPDT------------------------THIEIEPF 670
            E  A+I           AL  G AT D                         TH EI P 
Sbjct: 737  EETAMICMSPSDLDKFRALKFGGATLDELEAFDKNDINRRLNTKINPTTHMYTHCEIHPS 796

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             +LG+ A +IP+P HNQSPRN YQ AMGKQAMG    N   RMD++  +L YPQ+PL TT
Sbjct: 797  MLLGICASIIPFPDHNQSPRNCYQSAMGKQAMGFFLTNYNRRMDTMANILYYPQKPLGTT 856

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            R++E + + +L AGQNA VA+  YSGY+ ED+++MN+S++DRG  R +  + YT   ++ 
Sbjct: 857  RSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSTIDRGLFRSLFFRSYTDSEKRV 916

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
              +  ++  +P R    A+ +++   +      L+DDG+ APG  +   D+ I K +P+ 
Sbjct: 917  GINMVEKFEKPFR----ADTLRLKQGT---YDKLEDDGIVAPGTRVSGEDIIIGKTAPIP 969

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                 +   GQ   ++     +      E+ +VD+V + ++++G   +K  +R T+ P++
Sbjct: 970  ADNQEL---GQRTVQHTKRDASTPLRSTESGIVDQVIVTTNQDGLKYVKVRVRTTKIPQI 1026

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKG  G   + ED PF+  GI PD+I+NPH  PSRMT+  +IE L  K   
Sbjct: 1027 GDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSKVAT 1086

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G     + F E      TV+S+S  L +HG+   G +++Y G TG  L+A +F GP Y
Sbjct: 1087 LKGMEGDATPFTEV-----TVDSVSNLLREHGYQSRGFEVLYHGHTGRKLRAQVFFGPTY 1141

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1090
            YQ+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL
Sbjct: 1142 YQRLRHMVDDKIHARARGPVNIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERL 1201

Query: 1091 MVSSDPFEVQVCRVCGLLG-YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
               SD F   +C +CGL+    +   K   C  C+N   I+ + +PYA KLL QEL SMN
Sbjct: 1202 FEVSDAFRAHICGICGLMTPIADLTRKTFECRPCRNKTKIAQVHIPYAAKLLFQELASMN 1261

Query: 1150 IVPRL 1154
            I  R+
Sbjct: 1262 IATRM 1266


>gi|257076606|ref|ZP_05570967.1| DNA-directed RNA polymerase subunit B [Ferroplasma acidarmanus fer1]
          Length = 1195

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1233 (34%), Positives = 641/1233 (51%), Gaps = 151/1233 (12%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTG------IRKIV---RANDRIVSGI---DPSIFLR 81
            +L  F K   +V   +DS NYF  +       +++IV   + +D    G+   DPS   +
Sbjct: 4    ILDAFFKSESVVNYQIDSMNYFYASKNNPDNIMQQIVDETKISDDATPGVIDLDPSK-TK 62

Query: 82   FKDVRI------------GQPSMTVD--------GVSEKLNPHMCRLSDMTYAAPILVNI 121
             KD++I            G P++ VD        G + ++ P   RL D+ Y API++ +
Sbjct: 63   GKDIKIYFGRERQNGKATGDPTIWVDKPEIKEASGATNQITPQEARLRDLNYMAPIMLRL 122

Query: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD----------------EAELAR 165
              V+    +    + N + IG IP+M+RS  C L  ++                E +L  
Sbjct: 123  RIVE----DGIERDANTIKIGEIPVMVRSKICTLSEQNLDLYIEKNNGPIDETRENKLRY 178

Query: 166  LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTS-STETVKSKTVI 224
            + E P DPGGYFII G+E+V++  E L+ N+++++ ++K +    V    ++    + +I
Sbjct: 179  VDEDPTDPGGYFIIGGSERVIVSLEDLAPNKILVEYEEKYDSRVEVAKIFSQKSGFRALI 238

Query: 225  QMEKGK---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA 281
             MEKG    + + +      IP++++MKA+G++ D ++ + +  DPR   L+  +IE+  
Sbjct: 239  SMEKGSDGIINVSIPTVAGTIPLVILMKALGIDKDVDIHEAIYTDPRMDPLIYANIEDSR 298

Query: 282  NLDIY------TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
            NL I         E AL YLE   KR   G     R+ +   +L    L ++    ++  
Sbjct: 299  NLKILPPNGINNNEDALSYLE---KRFAAGQAKEFRDKKITQMLDRALLPHLGDDVSDRL 355

Query: 336  PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV 395
             K  Y+  M R ++E  L    +DDKD+  NKR++LSG L+  LF + F++++ +++  +
Sbjct: 356  KKAIYLGRMARSLLELNLGMRHVDDKDHYANKRIKLSGDLLDELFRNAFQSVMKDLKYQL 415

Query: 396  DIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIG 455
            +   +K  R  R  L   + +D +T  +  +++TGN+        R G++Q+L R S + 
Sbjct: 416  EKTYNK-KRGIR--LRPAVRQDLLTQKVLHSMATGNW-----IGGRTGVSQLLDRTSNMS 467

Query: 456  TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
            TL H+ R+     +S+     R L P+QWG +CP +TPEG+ CGLVKN +L+ +VT   +
Sbjct: 468  TLSHLRRIISPLTRSQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNASLIINVTQGID 527

Query: 516  EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK 575
               ++     +   D+  ++ EE     S  +  NG  +G H  P    D +R LRR+GK
Sbjct: 528  PDIVMEELQNM---DIHEVTKEEA----SGRIYLNGDFIGYHNDPAILTDTIRNLRRSGK 580

Query: 576  IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLRE 635
            +   V+V  +     V I  D GR+ RPL + ++G + + E  +++L  G  + +D +  
Sbjct: 581  LSNEVNVKYDSNTNEVIINCDRGRLRRPLFVVNEGKTVMNEEMLEKLRMGEYTVNDLISS 640

Query: 636  GLIEYLDVNEENNALIA----------------LYEGDATP------------------- 660
            G IE+LD  EE NA I+                LY  + T                    
Sbjct: 641  GAIEWLDAEEEENAYISVFPFEFPDNCPDCGKVLYRDNVTWINPGNSDVTLECDECHAHF 700

Query: 661  --------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                    D TH EI+   ILGV+A LIPYP HN SPR T   AM KQ++G    N   R
Sbjct: 701  KGTNNLSMDHTHCEIDASMILGVVASLIPYPEHNSSPRITIASAMIKQSIGLPQANYRIR 760

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
             D+  +LL YPQ PL+TT+ ++ + Y +  AGQN  VA++SY GY+++DAI+MNK+S++R
Sbjct: 761  TDTRGHLLHYPQIPLVTTKVMDFIKYRRKPAGQNFVVAIVSYHGYNMQDAIIMNKASIER 820

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G GR    + YTA  ++Y     D+   P     GA   +  ++ N     LD++G+  P
Sbjct: 821  GLGRSSFFRTYTAEERRYPGGQEDKFEIPSHDVLGARAEE--YYKN-----LDENGIIFP 873

Query: 833  GEIIKPNDVYINKESP----LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
               ++ +DV + K SP     E     + P  + +S   + R T      E+  VD V L
Sbjct: 874  ESKVEGSDVLVGKTSPPRFLEEENADKLGPLRRRESSV-TVRPT------ESGYVDNVFL 926

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
               ++    IK  +R  R P+ GDKF+SRHGQKGV G +  QED PF+E GI PDL+ NP
Sbjct: 927  TVSESNSRIIKVKVRSDRIPQPGDKFASRHGQKGVIGYVAAQEDMPFTEDGIIPDLLFNP 986

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNG 1007
            H  PSRMT+G ++E++G K     G     + F GEP        S+ E L K+GF  +G
Sbjct: 987  HSVPSRMTLGHVLEMMGAKVSTMSGENIDSTIFDGEPE------RSLREQLKKYGFRESG 1040

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y GITG   +  IFMG IYYQKL HMV  K HAR  GP  +LTRQPTEGR+R GGL
Sbjct: 1041 NEVMYDGITGKKFEVDIFMGVIYYQKLHHMVASKFHARSRGPVQILTRQPTEGRSRQGGL 1100

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC--RVCGLLGYYNHKLKAGICSTCKN 1125
            R GEMERD LIA+GASM+I +RL+  SD   + VC    CG +  Y+ +     C  C N
Sbjct: 1101 RFGEMERDTLIAHGASMVIKDRLLDQSDGTILYVCGNPTCGHIAIYDFRKGTLRCPACGN 1160

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              NI  ++  YA KL+  EL SM IV RL+L +
Sbjct: 1161 TGNIYPIETSYAFKLMRDELSSMGIVMRLELGD 1193


>gi|48477331|ref|YP_023037.1| DNA-directed RNA polymerase subunit B [Picrophilus torridus DSM 9790]
 gi|48429979|gb|AAT42844.1| DNA-directed RNA polymerase subunit B [Picrophilus torridus DSM 9790]
          Length = 1194

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/1233 (33%), Positives = 644/1233 (52%), Gaps = 152/1233 (12%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFV------NTGIRKIVRANDRIVSGIDPSIFL------R 81
            +L  F K   +V   ++S N+F       N  +++IV    ++    +P + L      R
Sbjct: 4    ILDYFFKTESVVNYQIESMNHFYATKDNPNNRMQEIVDET-KVSDDSEPGVILLDPVKTR 62

Query: 82   FKDVRI------------GQPSMTVD--------GVSEKLNPHMCRLSDMTYAAPILVNI 121
             K+++I            G+P++ V+        G S ++ P   R+ D+ Y AP+++ +
Sbjct: 63   GKEIKIYFGRIRENGKPSGEPTIWVEKPEIKEASGASNQITPQEARIRDLNYMAPVMLRL 122

Query: 122  EYVQGSHTEKTTMEKNDVV-IGRIPIMLRSCRCVLYGKD----------------EAELA 164
                    E    + ND + IG IP+M+RS  C L G +                  +L 
Sbjct: 123  RIF-----EDGIEKDNDTIKIGDIPVMVRSKICTLTGNNLDIYIEKNNGPINATRTEKLQ 177

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSS-TETVKSKTV 223
             +GE P D GGYFII G+E+V++  E L+ N+++++ ++K +    V    ++    + +
Sbjct: 178  YVGEDPNDTGGYFIIGGSERVIVSIEDLAPNKILVEYEEKYDNKVEVAKVFSQKGNFRAL 237

Query: 224  IQMEKGK---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC 280
              MEKG    + + +      +P++++MKA+GM+ D E+   +  D R   ++  +IEE 
Sbjct: 238  TSMEKGNDGIINVSIPTVAGTVPLVILMKALGMDKDIEIHNAIFSDIRMDPIIYANIEEA 297

Query: 281  ANLD------IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
             N        I T + A+ YLE   KR   G     RE +   +L    L ++    ++ 
Sbjct: 298  RNPKVLPPNGINTTDDAISYLE---KRFASGQAKEFREKKITQMLDRSLLPHLGDTVDDR 354

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  Y+  M R ++E  L     DDKD+  NKR++L+G L+  LF + F++++ +++  
Sbjct: 355  YKKALYLGRMARSLLELNLGIRQEDDKDHYANKRIKLAGDLLDELFANAFQSIMKDLKYQ 414

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFI 454
            ++   +   R     +   + +D +T  +  +++TGN+        R G++Q+L R S +
Sbjct: 415  LEKTYN---RKRGIRIRPAVRQDLLTQKILHSMATGNW-----IGGRTGVSQLLDRTSNV 466

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             TL H+ R+     +S+     R L P+QWG +CP +TPEG+ CGLVKN AL+ +VT   
Sbjct: 467  STLSHLRRIISPLTRSQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNAALIINVTQGI 526

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
            +   +I     LG+ D+E    EE    +S  +  NG  +G H  P  F + +R LRRAG
Sbjct: 527  DPDIIIDKIKNLGIYDVE---SEE----SSSRIYLNGDFIGYHNDPIAFVNTVRDLRRAG 579

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR 634
            +I + +++  + K   V +  D GR+ RPL+I + G + +    +++L  G  + +D + 
Sbjct: 580  RISQELNIRYDNKTNEVIMNCDRGRLRRPLLIVNDGKTVLNRDMVEKLKMGDYTIEDLVN 639

Query: 635  EGLIEYLDVNEENNALIALY---------------------------------------- 654
             G IE+LD  EE N+ IA+Y                                        
Sbjct: 640  LGAIEWLDAEEEENSYIAVYPFSYPERCPNCNSILYRDMVTWVNPGEDNIVLECDKCHAH 699

Query: 655  -EGDA--TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
             +G +  T + TH EI+P  ILGV+A LIPYP HN SPR T   AM KQ++G  A N   
Sbjct: 700  FDGKSLLTSEHTHCEIDPSMILGVVASLIPYPEHNSSPRITMASAMTKQSIGLPAANYRI 759

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R+D+  +LL YPQ PL+ T+ ++ + Y+   AGQN  VA++SY GY+I+DAIVMNK+S++
Sbjct: 760  RVDTRGHLLHYPQVPLVKTKVMDFIKYNNKPAGQNFVVAIVSYQGYNIQDAIVMNKASIE 819

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG GR    + YTA   +Y     DR   P     GA   +  ++ N     LD+ G+  
Sbjct: 820  RGLGRSAFFRTYTAEEIRYPGGQEDRFEIPTHDVLGARAEE--YYKN-----LDESGIIY 872

Query: 832  PGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            P   +  +DV + K SP   LE     + P      R R +  T +    E+  VD V L
Sbjct: 873  PESEVNGSDVLVGKTSPPRFLEENADKLGPM-----RRRESSVTMR--PNESGYVDNVFL 925

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
               ++    +K  +R  R P+ GDKF+SRHGQKGV G +V QED PF+E GI PDL+ NP
Sbjct: 926  TVSESNSRIVKVKVRMDRTPQPGDKFASRHGQKGVIGAVVPQEDMPFTEDGIIPDLLFNP 985

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNG 1007
            H  PSRMT+G ++E++G K   + G     + F GEP       +S+ E L K+GFS +G
Sbjct: 986  HSVPSRMTLGHVLEMMGAKVSTATGENIDSTIFDGEPE------KSLREELKKYGFSESG 1039

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
            ++++Y GITG   +A IF+G IYYQKL HMV +K HAR  GP  +LTRQPTEGR+R GGL
Sbjct: 1040 EEVMYDGITGRKFKARIFIGVIYYQKLHHMVANKFHARSRGPVQILTRQPTEGRSRQGGL 1099

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC--RVCGLLGYYNHKLKAGICSTCKN 1125
            R GEMERD LIA+GASM+I +RL+  SD   + VC    CG +  Y+ K     C  C N
Sbjct: 1100 RFGEMERDTLIAHGASMVIKDRLLDQSDGTILYVCGNPSCGHIAIYDFKRGTLKCPVCGN 1159

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              NI  ++  YA KL+  EL S+ I+ RL+L +
Sbjct: 1160 TGNIYPIETSYAFKLMRDELSSLGIIMRLELGD 1192


>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
          Length = 1194

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 405/1145 (35%), Positives = 617/1145 (53%), Gaps = 100/1145 (8%)

Query: 78   IFLRFKDVRIGQPSMTVDGVSEK--LNPHMCRLSDMTYAAPILVNIE----YVQGSHTEK 131
            I +    V+  +P++   G  +   L P   RL ++TYAA I V +     +++G+ ++ 
Sbjct: 38   ISITMDGVKASRPTVASTGAEQSSVLWPREARLRNLTYAASIYVGMTQTSVHIKGNESDD 97

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
               +  D+ +  IP+MLRS  C LYG D+   A +GEC  D GGYFII G+EK ++ QE+
Sbjct: 98   AVSKSMDIRLCTIPVMLRSEACNLYGLDDERRASIGECIYDQGGYFIINGSEKAIIAQER 157

Query: 192  LSKNRVIIDTDKKGNINASVTSSTETV------------------KSKTVIQMEKGKMYL 233
             + N+V +  +KK     S T+   +V                   SK+ I+  K  ++ 
Sbjct: 158  QTTNKVYV-FEKKQPSKYSWTAEIRSVPEGSSVPAQTLMLCMYAHSSKSQIK-NKYCIWA 215

Query: 234  LLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR---DPRYSALLLPSIEECANLDIYTQEK 290
             L     +IP+ ++ +A+G E+D+ ++Q +     D        PS+ E +  +  T+E 
Sbjct: 216  KLPTLSDEIPVCILFRALGCENDRSIIQHICYNFDDVEMMERFRPSLVEAS--ECRTREV 273

Query: 291  ALEYLEG---KVKRSTFGSPPNDREGRAFSILRDVFLANVPVH---NNNFRPKCFYVAVM 344
            AL ++     K+       P ++R   A  +L+ + L ++ V    N+N + K FY+  M
Sbjct: 274  ALNFIATRHPKMIDENGTRPRSERVKFASRLLQKIMLPHINVDFGPNSNCK-KAFYLGYM 332

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + +++   LN++  +D+D++ NKR++L+G ++  LF  L      E++  +  +++    
Sbjct: 333  VHKLLNCSLNRNEQEDRDHISNKRMDLAGPMIGRLFHGLLYRFTKELRSHMKKVVNSRKG 392

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
            SS  ++        I+ GL+ + +TGN+ D  R      G++Q L RL++  +L  + R+
Sbjct: 393  SSFINIMTNAKSSIISDGLKYSFATGNWGDRSRGMPTTTGVSQSLNRLTYASSLSSLRRL 452

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT----------D 513
                + + KV+ PR L  +QWGM+CP +TPEG++CG+VKNLALM +++           D
Sbjct: 453  KSPIDTTSKVTKPRLLHSTQWGMMCPAETPEGQSCGIVKNLALMCYISVGNPVGAAGARD 512

Query: 514  EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
             +   +  L    GVE+LE ++   +  P +  V  NG+ +G HR PK   D        
Sbjct: 513  WQVEKIYRLLENNGVEELETIASSLI--PKTTKVFVNGVWVGIHRDPKVILD------HR 564

Query: 574  GKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK--EHHMKELLDGVRSFDD 631
                  VS+  + ++R + I +D GR CRPL + D    R+K  ++H++ L      F D
Sbjct: 565  EDFDTDVSMVYDIQERELRITADAGRCCRPLYVVDPITQRVKIRKYHLRNLQPET-MFSD 623

Query: 632  FLREGLIEYLDVNEENNALI--------ALYEGDATPDTTHIEIEPFTILGVIAGLIPYP 683
             +   LIEY+   EE   +I        A  E  +    TH EI P  ILGV A +IP+P
Sbjct: 624  LVLNRLIEYVSAEEEEYCMIGMDLKTMRACVENRSCTTYTHCEIHPSMILGVCASIIPFP 683

Query: 684  HHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA 743
             HNQSPRNTYQ AMGKQAMG    N   RMD+  ++L YPQ+PL+TT+ +  + + +L A
Sbjct: 684  DHNQSPRNTYQSAMGKQAMGVYVSNYRQRMDTTAHVLSYPQQPLVTTKAMTYLRFKELPA 743

Query: 744  GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR 803
            G N  VA+  YSGY+ ED++++N+S+++RG  R I  + Y     +   +TS   L    
Sbjct: 744  GCNCVVAICCYSGYNQEDSLILNQSAIERGLFRSIFYRTYQDTEVRRDTTTSSLSLSNPS 803

Query: 804  TG------PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
             G      P +E+  +      L   LD+DGL  PG  +  + + I K           +
Sbjct: 804  MGNERFCRPLSEQCSMTKDEG-LYRNLDEDGLVKPGSRVTGDSILIGK----------AT 852

Query: 858  PTGQTDSRYRSA-RQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFS 915
            PTG+ +   RS  +    G    E+ +VD V L +++ G   +K  +R  R P++GDK S
Sbjct: 853  PTGELNVHGRSNLKDNSTGLRHAESGIVDEVMLTTNEKGFRFVKVKVRSVRVPQIGDKLS 912

Query: 916  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 975
            SRHGQKG  G   +QED PF+E GI PD+IMNPH  PSRMT+G++IE L GK      R 
Sbjct: 913  SRHGQKGTIGMTYRQEDMPFTENGIVPDIIMNPHAIPSRMTIGQLIECLLGKVAALQARE 972

Query: 976  HYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
              G+AF +      TVE IS  L   G+   G +++Y+G TG  ++A +FMGP +YQ+LK
Sbjct: 973  GDGTAFSDV-----TVEDISNKLHNEGYQKRGYEVLYNGHTGRRMEARVFMGPTFYQRLK 1027

Query: 1036 HMVLDKMHARGSG----PRVML--TRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFER 1089
            H+V DK+HAR  G    P  +L  TRQP EGR+R+GGLR+GEMERD LIAYGAS L+ ER
Sbjct: 1028 HLVDDKIHARARGMNTKPGRILHPTRQPLEGRSRDGGLRMGEMERDVLIAYGASQLVRER 1087

Query: 1090 LMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMN 1149
               SSD + V +C  CGL+          IC  C N    S +++PYACKLL QEL SMN
Sbjct: 1088 FFYSSDAYVVTICDDCGLICTMID--NTYICKNCDNKTRFSKVEIPYACKLLFQELMSMN 1145

Query: 1150 IVPRL 1154
            I PR+
Sbjct: 1146 IAPRI 1150


>gi|167385143|ref|XP_001737225.1| DNA-directed RNA polymerase II subunit RPB2 [Entamoeba dispar SAW760]
 gi|165900064|gb|EDR26512.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            dispar SAW760]
          Length = 1170

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 417/1206 (34%), Positives = 643/1206 (53%), Gaps = 138/1206 (11%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKI---------VRANDRIVSGI- 74
            + L+    K  GLVKQ L S+N F+        +   KI         + AND     I 
Sbjct: 16   WYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEHTIV 75

Query: 75   --DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEK 131
              DP     F  V  G  +      S  L PH  RL  +TYA  + V   + ++ + TE+
Sbjct: 76   LTDP--IFHFPKVSTGSKA------SASLFPHEARLRSLTYACQLEVKAKDTIRKNGTEE 127

Query: 132  -TTMEKNDVVIGRIPIMLRS--CR---CVLYGKDEAELARLGECPLDPGGYFIIKGTEKV 185
             TT+ K D  I  IP ML+S  CR   CV     +  +    EC  + GGYFIIKG+EKV
Sbjct: 128  ITTVPKID--IASIPSMLKSDVCRLKRCVT----QPSMISKDECSFEQGGYFIIKGSEKV 181

Query: 186  LLIQEQLSKNRVII--DTDK-----KGNINASVTSSTETVKSKTVI---QMEKGKM---- 231
            ++ QE+++ N V++   +D+     +GNIN S+ S+ E    K  +   +++K ++    
Sbjct: 182  VIAQEKMAPNTVLVFEGSDQLKYPYEGNIN-SLASNDEVRTHKIRMDYPKLDKSRLKIKV 240

Query: 232  -YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEK 290
              L L++    +P++++  A+G E+DQ++V+ +  D   + +           +  T E 
Sbjct: 241  PVLTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTED 300

Query: 291  ALEYL---------EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
            A  +L         EG ++  +       R+G     L+   L ++    +NF  K  ++
Sbjct: 301  ARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGT--EKLKKDLLPHIGT--DNFESKAQFL 356

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M    +     K   DD+D++  KR+ ++G L+  LF++  K M+    KT    L K
Sbjct: 357  GYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMM----KTARAQLQK 412

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHM 460
               S++  + ++ +   +IT    + L TGN+     K  R G+ QVL+RL+F   L ++
Sbjct: 413  QLSSNKTLEYAKPLSFPTITSDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYL 472

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT---DEEEG 517
             ++S   E  RK   PR L  +QWG +CP +TPEGE+CGLVK L+LM  +T    DE+  
Sbjct: 473  RKISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVD 532

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR---AG 574
             +     C  V ++   +GE+++N     V  NG+ L    +P+   + ++  R+    G
Sbjct: 533  EIKEALDCQYVCNINDCTGEKMNNITK--VFLNGVWLKCSEQPQKLLEELKNYRKNSTKG 590

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG----ISRIKEHHMKEL---LDG-- 625
            K+ + +S+ +++  + + I +D GR  RPL             +K+  + EL   LD   
Sbjct: 591  KVKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNES 650

Query: 626  -----VRSFDDFLREGLIEYLDVNEENNALIALY-------EGDATPDTTHIEIEPFTIL 673
                  + +++FL +G+IEY+D +EE  ++IA++       EG ++ + TH EI P  ++
Sbjct: 651  NGTEKTKFWNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNTEGGSSKNYTHCEIHPALVM 710

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV+  +IP+P HNQSPRNTYQCAMGKQA+G  A N   R+DSL ++L YPQ+PL++TR  
Sbjct: 711  GVLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAA 770

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E V +  + AG NA VAV  YSGY+ ED+++MN+ S+DRG  R +  K ++  + K + +
Sbjct: 771  EYVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSE-DAKKSET 829

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV-----YINKESP 848
            T     +P      +E    +         +D DG+ APG  +KP+D+     Y NK   
Sbjct: 830  TELMFFKP------SENNSEITEDISKYEKVDVDGILAPGTKVKPDDILVAGFYENKNKT 883

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            L+              RY+           E  VVD+V + + ++G   I+  +R  R P
Sbjct: 884  LK----------DCSLRYKPR---------ENGVVDQVVVTNAQSGTKYIRVKMRSIRIP 924

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ++GDKFSSRHGQKG  G   +QED PF+  GI PD+IMNPH  PSRMTVG+++E L GK 
Sbjct: 925  QIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKV 984

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            G   G    G+ F +      TV+ I E L K  +   G + ++SG TG  L + +++GP
Sbjct: 985  GALVGDVQSGTPFQKDI----TVDKIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGP 1040

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
             YYQ+LKH+V DK+H R +GP   LTRQP EGR+R+GGLR+GEMERDC+I++G S L+ E
Sbjct: 1041 TYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKE 1100

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL ++SD +++ VC  C +    NHK     CS CK+  +IS + +PYACKLL QEL SM
Sbjct: 1101 RLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSM 1160

Query: 1149 NIVPRL 1154
             + PR+
Sbjct: 1161 AVCPRI 1166


>gi|407045039|gb|EKE42974.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1170

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 416/1206 (34%), Positives = 640/1206 (53%), Gaps = 138/1206 (11%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKI---------VRANDRIVSGI- 74
            + L+    K  GLVKQ L S+N F+        +   KI         + AND     I 
Sbjct: 16   WYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEHTIV 75

Query: 75   --DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV--QGSHTE 130
              DP     F  V  G  +      S  L PH  RL  +TYA  + V  + +  +    E
Sbjct: 76   LTDP--IFHFPKVSTGSKA------SASLFPHEARLRSLTYACQLEVKAKDIIRKNGAEE 127

Query: 131  KTTMEKNDVVIGRIPIMLRS--CR---CVLYGKDEAELARLGECPLDPGGYFIIKGTEKV 185
             TT+ K D  I  IP ML+S  CR   CV     +  +    EC  + GGYFIIKG+EKV
Sbjct: 128  ITTVPKID--IASIPSMLKSDVCRLKRCVT----QPSMISKDECSFEQGGYFIIKGSEKV 181

Query: 186  LLIQEQLSKNRVII--DTDK-----KGNINASVTSSTETVKSKTVI---QMEKGKM---- 231
            ++ QE+++ N V++   +D+     +GNIN S+ S+ E    K  +   +++K ++    
Sbjct: 182  VIAQEKMAPNTVLVFEGSDQLKYPYEGNIN-SLASNDEVRTHKIRMDYPKLDKSRLKIKV 240

Query: 232  -YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEK 290
              L L++    +P++++  A+G E+DQ++V+ +  D   + +           +  T E 
Sbjct: 241  PVLSLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTED 300

Query: 291  ALEYL---------EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
            A  +L         EG ++  +       R+G     L+   L ++    +NF  K  ++
Sbjct: 301  ARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGT--EKLKKDLLPHIGT--DNFESKAQFL 356

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M    +     K   DD+D++  KR+ ++G L+  LF++  K M+    KT    L K
Sbjct: 357  GYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMM----KTARAQLQK 412

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHM 460
               S++  + ++ +   +IT    + L TGN+     K  R G+ QVL+RL+F   L ++
Sbjct: 413  QLSSNKALEYAKPLSFPTITTDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYL 472

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT---DEEEG 517
             ++S   E  RK   PR L  +QWG +CP +TPEGE+CGLVK L+LM  +T    DE+  
Sbjct: 473  RKISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVD 532

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR---AG 574
             +     C  V ++   +GE+++N     V  NG+ L    +P+   + ++  R+    G
Sbjct: 533  EIKEALDCQYVCNINDCTGEKMNNITK--VFLNGVWLKCSEQPQKLLEELKNYRKNSTKG 590

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG----ISRIKEHHMKEL---LDG-- 625
            K+ + +S+ +++  + + I +D GR  RPL             +K+  + EL   LD   
Sbjct: 591  KVKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNES 650

Query: 626  -----VRSFDDFLREGLIEYLDVNEENNALIALY-------EGDATPDTTHIEIEPFTIL 673
                  + +++FL +G+IEY+D +EE  ++IA++       EG ++ + TH EI P  ++
Sbjct: 651  NGTEKTKFWNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNTEGGSSKNYTHCEIHPALVM 710

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV+  +IP+P HNQSPRNTYQCAMGKQA+G  A N   R+DSL ++L YPQ+PL++TR  
Sbjct: 711  GVLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAA 770

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E V +  + AG NA VAV  YSGY+ ED+++MN+ S+DRG  R +  K ++  + K + +
Sbjct: 771  EYVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSE-DAKKSET 829

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV-----YINKESP 848
            T     +P      +E    +         +D DG+ APG  +KP+D+     Y NK   
Sbjct: 830  TELMFFKP------SENNSEITEDISKYEKVDVDGILAPGTKVKPDDILVAGFYENKNKT 883

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            L+              RY+           E  VVD+V + + ++G   I+  +R  R P
Sbjct: 884  LK----------DCSLRYKPR---------ENGVVDQVVVTNAQSGTKYIRVKMRSIRIP 924

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ++GDKFSSRHGQKG  G   +QED PF+  GI PD+IMNPH  PSRMTVG+++E L GK 
Sbjct: 925  QIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKV 984

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            G   G    G+ F +      TV+ I E L K  +   G + ++SG TG  L + +++GP
Sbjct: 985  GALVGDVQSGTPFQKDV----TVDRIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGP 1040

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
             YYQ+LKH+V DK+H R +GP   LTRQP EGR+R+GGLR+GEMERDC+I++G S L+ E
Sbjct: 1041 TYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKE 1100

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL ++SD +++ VC  C +    NHK     CS CK+  +IS + +PYACKLL QEL SM
Sbjct: 1101 RLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSM 1160

Query: 1149 NIVPRL 1154
             + PR+
Sbjct: 1161 AVCPRI 1166


>gi|149067363|gb|EDM17096.1| similar to RNA polymerase III subunit RPC2 (predicted) [Rattus
           norvegicus]
          Length = 826

 Score =  637 bits (1643), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/587 (54%), Positives = 400/587 (68%), Gaps = 34/587 (5%)

Query: 374 QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD 433
           QL+SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ 
Sbjct: 271 QLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWS 329

Query: 434 VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
           +KRFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RK                     
Sbjct: 330 LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRK--------------------- 368

Query: 494 EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
              ACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG I
Sbjct: 369 ---ACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNI 425

Query: 554 LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
           LG  R  K      R +RRAG I EFVS+  N   RCVYI+SDGGR+CRP +I  K    
Sbjct: 426 LGVIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPA 485

Query: 614 IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
           +   HM+EL  G R+F+DFL E L+EYLDVNEEN+  IALYE     DTTH+EIEPFT+L
Sbjct: 486 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLL 545

Query: 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
           GV AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ  R+D+L+YLL YPQ+P++ T+TI
Sbjct: 546 GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTI 605

Query: 734 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
           EL+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K      ++Y N 
Sbjct: 606 ELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQ 665

Query: 794 TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
           T D+++ P      A R  +  H      ILD DG+ +PGE ++   V +NK  P  T+ 
Sbjct: 666 TFDKVMGP--MLDAATRKPIWRHE-----ILDADGICSPGEKVENKQVLVNKSMPTVTQI 718

Query: 854 SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
            +         +Y+    TYKG       +++V + S+      IK L+R TRRPE+GDK
Sbjct: 719 PLEGSNVPQQPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDK 776

Query: 914 FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
           FSSRHGQKGVCG IV QED PF + GICPD+IMNPHGFPSRMTV  +
Sbjct: 777 FSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVSHL 823



 Score =  283 bits (723), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 139/278 (50%), Positives = 195/278 (70%), Gaps = 16/278 (5%)

Query: 19  QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
           ++LAAP+ +V           +V+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14  EELAAPIPTV-----------EVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 62

Query: 79  FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
           +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 63  YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 118

Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 119 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 178

Query: 198 IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
           I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 179 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 238

Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYL 295
           E+VQM+G +    A   PS+EEC    I+TQ + L  L
Sbjct: 239 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQLLSLL 276


>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
            reinhardtii]
          Length = 1607

 Score =  637 bits (1643), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 399/1103 (36%), Positives = 598/1103 (54%), Gaps = 86/1103 (7%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV--------SGIDPS---- 77
            D + ++  F   +GLV+Q LDSFN FVN  I++I+     IV         G++ +    
Sbjct: 16   DSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAAEEKE 75

Query: 78   IFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT-EKTTME 135
              ++F  V + +P +T  DG S  L P   RL ++TY AP+ V++   + +   E    E
Sbjct: 76   YIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTRVGENEVEE 135

Query: 136  KND---VVIGRIPIMLRSCRCVLY-GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
            K D   V +G++PIML+S RC L+    E E   LGECP D GGYF+I G+EKVL+ QE+
Sbjct: 136  KTDLSHVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYFVINGSEKVLIAQER 195

Query: 192  LSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIP- 243
            ++ N V +    +         I + V  ST +  S +++ + KGK          +IP 
Sbjct: 196  MANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQIPY 255

Query: 244  ------IMVVMKAMGMESDQEVVQMV----GRDPRYSALLLPSIEECANLDIYTQEKALE 293
                  I ++ +A+G  SD+++++ +      DP     L  S+EE    ++ TQE+AL 
Sbjct: 256  IRAEFPIFILFRALGFVSDRDILEHIVYDLDADPAMLEALRSSVEEAQ--EVQTQEEALN 313

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            YL GK + +  G+   DR   A ++L    L ++         K ++V  M+ R++   L
Sbjct: 314  YL-GK-RGTVTGASKADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLMLVAL 371

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             +   DD+D+  NKRL+L G L++ LF  LF+ +  E+    Q+ VD            +
Sbjct: 372  GRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDA-------GKEIN 424

Query: 410  LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
            +   I    IT GL+ +L+TGN+  +  +  R G++QVLARL++  TL H+ RV+    +
Sbjct: 425  VISAINDKVITRGLKYSLATGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRRVNSPIGR 484

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR L  S WG+ CP +TPEG+A GLVKN+ALM ++T      P+++       E
Sbjct: 485  EGKLAKPRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTE 544

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
             L+ ++  ++    S  V  NG+ LG  R P      +R +RR       V++  +   +
Sbjct: 545  ALDEVTPADI--AASTKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYDGPLK 602

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVN 644
             + I +D GR  RPL I +     + +HH++ L+  +   D++     +++GL+EY+D  
Sbjct: 603  ELRIFTDYGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYIDAE 662

Query: 645  EENNALIALY---------EGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 694
            EE   +IA+           G AT  T TH EI P  ILGV A +IP+P HNQSPRNTYQ
Sbjct: 663  EEETTMIAMTIADLRNAREAGAATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 722

Query: 695  CAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 754
             AMGKQAMG  A N   RMD+  ++L YPQ+PL+ TR ++ + + +L AG NA VA+M Y
Sbjct: 723  SAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLMFRELPAGINAIVAIMCY 782

Query: 755  SGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVV 814
            SGY+ ED++++N SS+DRGF R I+ + Y    +K  +   + I  PD +     +M+  
Sbjct: 783  SGYNQEDSLMLNGSSIDRGFHRSILYRAYKEEEKKAGSMAREEIEAPDPS--VTSKMKHG 840

Query: 815  HHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK 874
             +       LD DGL  PG  +   D+   K   L        PTG    R+     +  
Sbjct: 841  TYDK-----LDADGLCPPGTRVSGEDIICGKTVTLPD-----DPTGAV-QRFTKKDASLA 889

Query: 875  GPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFP 934
                E  V+D+V L ++  G   +K  +R    P++GDKF+SRHGQKG CG     ED P
Sbjct: 890  LRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMP 949

Query: 935  FSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESI 994
            F+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F +      TV+++
Sbjct: 950  FTAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGSEGDATPFTKV-----TVDNV 1004

Query: 995  SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLT 1054
            S+ L   G+   G +++YSG TG  L+A IF+ P YYQ+LKHMV  K+H+RG GP  +LT
Sbjct: 1005 SQMLHDLGYQRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLT 1064

Query: 1055 RQPTEGRARNGGLRVGEMERDCL 1077
            RQP EGRAR+GGLR GEMERDCL
Sbjct: 1065 RQPAEGRARDGGLRFGEMERDCL 1087



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            +C+I++GA+  + ERL   SD + + VC   GL+   N K +    +  K+G NI  + +
Sbjct: 1516 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQVYI 1575

Query: 1135 PYACKLLIQELQSMNIVPRLKL 1156
            PYACKLL QEL +M I PR++ 
Sbjct: 1576 PYACKLLFQELMAMCIAPRMQF 1597


>gi|16081519|ref|NP_393870.1| DNA-directed RNA polymerase subunit B [Thermoplasma acidophilum DSM
            1728]
 gi|548823|sp|Q03587.1|RPOB_THEAC RecName: Full=DNA-directed RNA polymerase subunit B
 gi|809775|emb|CAA48280.1| DNA-directed RNA polymerase [Thermoplasma acidophilum]
 gi|10639562|emb|CAC11534.1| probable DNA-directed RNA polymerase chain B [Thermoplasma
            acidophilum]
          Length = 1195

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 408/1233 (33%), Positives = 639/1233 (51%), Gaps = 149/1233 (12%)

Query: 33   QLLPEFLKVRGLVKQHLDSFNYFV------NTGIRKIVRANDRIVSGIDPSIF------- 79
            +++  + K  G+V   LDS N F       N+ +++IV    ++    DP  F       
Sbjct: 3    EIVDAYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVDET-KVSDDADPGYFVLDPAKT 61

Query: 80   ------LRFKDVR------------IGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN 120
                  + +  VR            IG+P +    G S ++ P+  RL D+ Y AP+ + 
Sbjct: 62   GGHDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAPVTLK 121

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD----------------EAELA 164
            +  V+    + + + K    +G +P+M+RS  C L  ++                  +L 
Sbjct: 122  LRIVEDGIEKGSEIIK----VGDLPVMVRSKICTLSEENLDQYIEKNNGPIGLSRREKLQ 177

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSS-TETVKSKTV 223
             +GE P DPGGYFII G+E+V++  E L+ N+++++ + +      V+   ++    + +
Sbjct: 178  YVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMVEWEDRYESKVEVSKVFSQRGGFRAL 237

Query: 224  IQMEKGK---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC 280
              MEKG    + + +      +P++++MKA+G+E D +V   +   P    ++  +IE+ 
Sbjct: 238  TSMEKGTDGTINVSIPSVAGTVPLVILMKALGLERDVDVHDAIASVPEMEPIIYSNIEDS 297

Query: 281  ANLDIY------TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
             N  +       T E A+ YLE   KR   G     R+ +   +L    L ++    ++ 
Sbjct: 298  KNPKVLPPNGVNTTEDAISYLE---KRFAAGQAKEFRDKKISQMLDHSLLPHLGDSPSDR 354

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  Y+  M R ++E  L     DDKD++ NKR++L+G L+  LF   F++++ +++  
Sbjct: 355  IRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLKYQ 414

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFI 454
            ++   +   R     +   + +D +T  +   +STGN+        R G++Q+L R+S +
Sbjct: 415  LEKTYN---RKRGIKIRPAVRQDLLTQRVLHAMSTGNW-----IGGRTGVSQLLDRVSNL 466

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             T+ H+ R+     +++     R L P+QWG +CP +TPEG+ CGLVKN AL+ +VT   
Sbjct: 467  STISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGI 526

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
            +   ++ +   + V   E+L      +P    V  NG  +G H  P+     +R+ RR+G
Sbjct: 527  DPDSVMEILKGMDVR--EVLE----ESPKKGRVYLNGDFIGYHDDPRYLVSRIREERRSG 580

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR 634
            ++ + V+V  ++    V + SD GR+ RPL+I   G + +    ++ L  G  SF+D ++
Sbjct: 581  RMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKDGKTVLDRTMIERLKHGEISFEDLVK 640

Query: 635  EGLIEYLDVNEENNALIALYEGDA------------------------------------ 658
            +G IE+LD  EE +  +A+Y  D                                     
Sbjct: 641  QGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYLYRSMVDWVNPGESEITLECGFCHQR 700

Query: 659  -------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                   + + TH+EI+P  ILGV+A +IPYP HN SPR T   AM KQ++G    N   
Sbjct: 701  FNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQSLGFAQSNVRI 760

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R D+  +LL YPQ PL+ TR ++ + YD+  AGQN  VAV+SY GY+I+DA+V+NK++++
Sbjct: 761  RPDTRGHLLHYPQVPLVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIE 820

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG GR    + Y+A  ++Y     D+   P     GA   +  ++ N     LDD G+  
Sbjct: 821  RGLGRSTFFRTYSAEERRYPGGQEDKFEIPTHDIIGARAEE--YYKN-----LDDSGIIF 873

Query: 832  PGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            P   ++ +DV I K SP   LE     + P      R R +  T +    E+  VD V L
Sbjct: 874  PEAYVEGSDVLIGKTSPPRFLEEGEERLGP-----QRRRESSVTMR--PNESGYVDNVFL 926

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
               ++    +K  +R  R PELGDKF+SRHGQKGV G +V QED PF+E GI PDLI NP
Sbjct: 927  TVSESNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVVPQEDMPFTEDGIIPDLIFNP 986

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNG 1007
            H  PSRMTVG ++E++GGK     GRF  G+ F GEP       +S+ + LVK+GF  + 
Sbjct: 987  HSIPSRMTVGHILEMIGGKIASRTGRFIDGTIFSGEPE------KSLRDALVKYGFRKSS 1040

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y GITG   +A IF+G IYYQKL HMV  K HAR  GP  +LTRQPTEGR+R GGL
Sbjct: 1041 TEVMYDGITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGL 1100

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC--RVCGLLGYYNHKLKAGICSTCKN 1125
            R GEMERD LIA+GA+M+I +RL+  SD   + VC    CG +  Y+ +     C  C N
Sbjct: 1101 RFGEMERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCPVCGN 1160

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              NI  ++  YA KL+  EL S+ +V RL L +
Sbjct: 1161 TGNIYPIETSYAFKLMRDELISLGVVMRLMLGD 1193


>gi|67475595|ref|XP_653488.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56470445|gb|EAL48102.1| DNA-directed RNA polymerase subunit, putative [Entamoeba histolytica
            HM-1:IMSS]
 gi|449706687|gb|EMD46481.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            histolytica KU27]
          Length = 1170

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 415/1206 (34%), Positives = 639/1206 (52%), Gaps = 138/1206 (11%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFV-------NTGIRKI---------VRANDRIVSGI- 74
            + L+    K  GLVKQ L S+N F+        +   KI         + AND     I 
Sbjct: 16   WYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEHTIV 75

Query: 75   --DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV--QGSHTE 130
              DP     F  V  G  +      S  L PH  RL  +TY+  + V  +    +    E
Sbjct: 76   LTDP--IFHFPKVSTGSKA------SASLFPHEARLRSLTYSCQLEVKAKDTIRKNGAEE 127

Query: 131  KTTMEKNDVVIGRIPIMLRS--CR---CVLYGKDEAELARLGECPLDPGGYFIIKGTEKV 185
             TT+ K D  I  IP ML+S  CR   CV     +  +    EC  + GGYFIIKG+EKV
Sbjct: 128  ITTVPKID--IASIPSMLKSDVCRLKRCVT----QPSMINKDECSFEQGGYFIIKGSEKV 181

Query: 186  LLIQEQLSKNRVII--DTDK-----KGNINASVTSSTETVKSKTVI---QMEKGKM---- 231
            ++ QE+++ N V++   +D+     +GNIN S+ S+ E    K  +   +++K ++    
Sbjct: 182  VIAQEKMAPNTVLVFEGSDQLKYPYEGNIN-SLASNDEVRTHKIRMDYPKLDKSRLKIKV 240

Query: 232  -YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEK 290
              L L++    +P++++  A+G E+DQ++V+ +  D   + +           +  T E 
Sbjct: 241  PVLSLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTED 300

Query: 291  ALEYL---------EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
            A  +L         EG ++  +       R+G     L+   L ++    +NF  K  ++
Sbjct: 301  ARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGT--EKLKKDLLPHIGT--DNFESKAQFL 356

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M    +     K   DD+D++  KR+ ++G L+  LF++  K M+    KT    L K
Sbjct: 357  GYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMM----KTARAQLQK 412

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHM 460
               S++  + ++ +   +IT    + L TGN+     K  R G+ QVL+RL+F   L ++
Sbjct: 413  QLSSNKALEYAKPLSFPTITTDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYL 472

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT---DEEEG 517
             ++S   E  RK   PR L  +QWG +CP +TPEGE+CGLVK L+LM  +T    DE+  
Sbjct: 473  RKISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVD 532

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR---AG 574
             +     C  V ++   +GE+++N     V  NG+ L    +P+   + ++  R+    G
Sbjct: 533  EIKEALDCQYVCNINDCTGEKMNNITK--VFLNGVWLKCSEQPQKLLEELKNYRKNSTKG 590

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG----ISRIKEHHMKEL---LDG-- 625
            K+ + +S+ +++  + + I +D GR  RPL             +K+  + EL   LD   
Sbjct: 591  KVKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNES 650

Query: 626  -----VRSFDDFLREGLIEYLDVNEENNALIALY-------EGDATPDTTHIEIEPFTIL 673
                  + +++FL +G+IEY+D +EE  ++IA++       EG ++ + TH EI P  ++
Sbjct: 651  NGTEKTKFWNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNTEGGSSKNYTHCEIHPALVM 710

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV+  +IP+P HNQSPRNTYQCAMGKQA+G  A N   R+DSL ++L YPQ+PL++TR  
Sbjct: 711  GVLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRAA 770

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E V +  + AG NA VAV  YSGY+ ED+++MN+ S+DRG  R +  K ++  + K + +
Sbjct: 771  EYVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSE-DAKKSET 829

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV-----YINKESP 848
            T     +P      +E    +         +D DG+ APG  +KP+D+     Y NK   
Sbjct: 830  TELMFFKP------SENNSEITEDISKYEKVDVDGILAPGTKVKPDDILVAGFYENKNKT 883

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            L+              RY+           E  VVD+V + + ++G   I+  +R  R P
Sbjct: 884  LK----------DCSLRYKPR---------ENGVVDQVVVTNAQSGTKYIRVKMRSIRIP 924

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ++GDKFSSRHGQKG  G   +QED PF+  GI PD+IMNPH  PSRMTVG+++E L GK 
Sbjct: 925  QIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKV 984

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
            G   G    G+ F +      TV+ I E L K  +   G + ++SG TG  L + +++GP
Sbjct: 985  GALVGDVQSGTPFQKDV----TVDRIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGP 1040

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1088
             YYQ+LKH+V DK+H R +GP   LTRQP EGR+R+GGLR+GEMERDC+I++G S L+ E
Sbjct: 1041 TYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKE 1100

Query: 1089 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
            RL ++SD +++ VC  C +    NHK     CS CK+  +IS + +PYACKLL QEL SM
Sbjct: 1101 RLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSM 1160

Query: 1149 NIVPRL 1154
             + PR+
Sbjct: 1161 AVCPRI 1166


>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
          Length = 1152

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 400/1145 (34%), Positives = 605/1145 (52%), Gaps = 146/1145 (12%)

Query: 80   LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI----------------- 121
            L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I                 
Sbjct: 34   LKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGRERSLAERDE 93

Query: 122  ------------EYVQGSHTE-------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAE 162
                           +G++ +       +   ++ ++ IG++PIML+S  C+L    E  
Sbjct: 94   DDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKDLGEHA 153

Query: 163  LARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSST 215
            L    ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   +
Sbjct: 154  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGS 213

Query: 216  ETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRD 266
              +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  D
Sbjct: 214  RILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHICYD 273

Query: 267  PRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGR---AFSI 318
               + +L    P IEE     I  +E AL+++      S  GS P   + E R   A  I
Sbjct: 274  RNDTPMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPTSMNHEKRVRYARDI 325

Query: 319  LRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            ++  FL ++     +   K F++  M+ ++++  L +  +DD+D+ G KRL+L+G L++ 
Sbjct: 326  IQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 385

Query: 379  LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRF 437
            LF  LF  +  ++ K V   +     + +  L+  +   ++T GL+  L+TGN+ + K+ 
Sbjct: 386  LFRVLFMRLTKDLYKYVQRCVET---NRQLYLNIGVKASTLTGGLKYALATGNWGEQKKA 442

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
               + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+A
Sbjct: 443  ASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 502

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLALM ++T      P+I       +E LE    E   +PNS  +  NG+ +G H
Sbjct: 503  CGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF--EPQVSPNSTKIFVNGVWVGVH 560

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-------- 609
            R P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D         
Sbjct: 561  RDPSHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSG 620

Query: 610  GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL-- 653
             +   KEH  K              E  +    +D  ++ G++EY+D  EE   +I +  
Sbjct: 621  SLVLTKEHIHKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSP 680

Query: 654  --------YEGDATPD--------------------TTHIEIEPFTILGVIAGLIPYPHH 685
                    Y+    P+                     TH EI P  ILG+ A +IP+P H
Sbjct: 681  EDLEVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDH 740

Query: 686  NQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQ 745
            NQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +L AGQ
Sbjct: 741  NQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLKFRELPAGQ 800

Query: 746  NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG 805
            NA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R+ 
Sbjct: 801  NAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERFEKPMRS- 859

Query: 806  PGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 865
               + +++ H +      +DDDG+ APG  +   D+ I K +PL      +   GQ   +
Sbjct: 860  ---DTLRMKHGT---YDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEEL---GQRTKQ 910

Query: 866  YRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVC 924
            +     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  
Sbjct: 911  HTKLDVSTPLRSTESGIVDQV-LVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTI 969

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R + G A    
Sbjct: 970  GVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSSLRGYEGDA---- 1023

Query: 985  SGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
            +   D TV+S+S  L +HG+   G +++Y+G TG  L A IF+GP YYQ+L+HMV DK+H
Sbjct: 1024 TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIH 1083

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            AR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS  + ERL   SDPF V +C 
Sbjct: 1084 ARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICD 1143

Query: 1104 VCGLL 1108
            +CGL+
Sbjct: 1144 ICGLM 1148


>gi|440296149|gb|ELP88990.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            invadens IP1]
          Length = 1180

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 416/1201 (34%), Positives = 636/1201 (52%), Gaps = 124/1201 (10%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND-----------RIVSGIDPSIFL 80
            + L+ E  +  GLVKQ L SFN FV   ++ IV+ +            R+    + S  L
Sbjct: 22   WYLIEEHFRENGLVKQQLSSFNNFVKR-VQDIVKTDTFKFEVNNSDTLRVNPADEESHTL 80

Query: 81   RFKDVRIGQPSMTVD---GVSEKLNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTTM 134
             F + +   P +       V EK+ PH  R+  +TYA+ + +N++   Y  G   ++ T 
Sbjct: 81   EFDETKYRYPQIKTSPNSNVKEKIFPHEARIRGLTYASELKINVKDTIYRGGKLVDEKTS 140

Query: 135  EKNDVVIGRIPIMLRS--CRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
            +  D  +  IP ML+S  CR V   K   ++ +  EC  + GGYF++KG+EKV++ QE++
Sbjct: 141  DFFD--LASIPAMLKSKICRLVSIVKLN-DIIQSDECQFEQGGYFVVKGSEKVVIAQEKM 197

Query: 193  SKNRVII----DTDK---KGNINASVTSSTETVKSKTVIQMEKGKMY----------LLL 235
            S N V++    D  K   +GNIN S+  + E    K  +   K +            L +
Sbjct: 198  SPNTVLVFEGSDMAKYPFEGNIN-SLAMNDEVRSHKIRMDFPKNQEMNKDLKVKVPMLTM 256

Query: 236  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYL 295
            ++ +  +P++++  A+G E+D+++V  +  D + + +           +  T EKA E++
Sbjct: 257  SRMMCDVPLVLLFVALGYETDEKIVDAICFDEKDNEMYNIVTTAIQANEYTTVEKAREWI 316

Query: 296  EGKVKRS--------TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
                KRS        T       R+G   S L+   L ++ V  +NF  K +++  M   
Sbjct: 317  GRNSKRSNKEGDEIVTENIEKMRRDGT--SKLKTDLLPHIGV--DNFESKAYFLGYMTNH 372

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR 407
             +     K   DD+D++  KR+ ++G L+  LF++  K +    +  +  I+S   +S  
Sbjct: 373  FLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNALKKLTKYARNKIQDIVSH-KKSDN 431

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
             D  +      IT   ++ LSTGN+     K  R G+ QVL R++F   L ++ ++S   
Sbjct: 432  IDYGKVYNSKIITDDCKKALSTGNWPQPGGKEARHGVAQVLNRITFTSALAYLRKISSPV 491

Query: 468  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD------EEEGPLIS 521
            E  RK   PR L  +QWG +CP +TPEGE CGLVK L+LM  +T        +E    ++
Sbjct: 492  EGKRKTQKPRQLHNTQWGYICPAETPEGEQCGLVKMLSLMAQITVALPLQNVQEIKDQLN 551

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRR---AGKIG 577
              YC   +D+    G   HN N+   +F NG  L     P+   D +++ R+    GK+ 
Sbjct: 552  SQYC---KDISECLG---HNMNTTTKVFLNGSWLKCTDEPQKLLDDLKQYRKNSEKGKVK 605

Query: 578  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADK-----GISRIKEHHMKELLDGVRS---- 628
            + +S+ +++  R + I +D GR  RPL          GI+  KE   +  ++  R+    
Sbjct: 606  KVMSMVLDQLHRELRIYTDAGRCTRPLFTVSNNNGELGINLQKEQIKQLCIEMGRNDENG 665

Query: 629  -----FDDFLREGLIEYLDVNEENNALIALYEGD-------ATPDTTHIEIEPFTILGVI 676
                 + +FL +G+IEY+D +EE  ++IA++  D          + TH EI P  I+G++
Sbjct: 666  QKKKLWANFLTKGIIEYVDADEEEMSMIAMFPSDLLNRGSGPAVNYTHCEINPALIMGIL 725

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
              +IP+P HNQSPRNTYQCAMGKQA+G  A N   RMDSL ++L YPQ+PL++T+  +  
Sbjct: 726  GSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRMDSLGHVLFYPQKPLVSTKGADYA 785

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             + ++ AG NA VAV  YSGY+ ED+++MN+ S+DRG  R +  K +   + K    T  
Sbjct: 786  KFGEIPAGINAVVAVCVYSGYNQEDSVMMNQGSIDRGLFRSMCFKTFLK-DYKKGEETDL 844

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN---KESPLETRG 853
               RP     G +   V  + +L     D DG+A PG  ++ +DV I    K    E + 
Sbjct: 845  MFFRP---CEGTDLKDVSKYQHL-----DVDGVAPPGTKVRADDVIIGAFYKGKSGELKD 896

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
              M        RY+           E  VVD+V + + +N    IK  +R  R P++GDK
Sbjct: 897  CSM--------RYKPR---------ENGVVDQVVVATTENRAKMIKIKMRSIRIPQIGDK 939

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            FSSRHGQKG  G   +QED PF+  GI PD+IMNPH  PSRMTVG+++E L GK G   G
Sbjct: 940  FSSRHGQKGTVGMTYRQEDMPFNIEGINPDIIMNPHAIPSRMTVGQLVECLLGKVGALVG 999

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
                G+ F +P     TV+ IS+ L K  +   G + ++SG TG  L   ++MGP YYQ+
Sbjct: 1000 DVQNGTPF-QP---GLTVDVISDRLHKLKYQRWGYEALFSGHTGRKLDTLVYMGPTYYQR 1055

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVS 1093
            LKH+V DK+H R +GP   LTRQP EGR+R+GGLR+GEMERDC+I++G S L+ ERL ++
Sbjct: 1056 LKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGMSALLRERLFLA 1115

Query: 1094 SDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPR 1153
            SD ++V VC  C +    N +     CS CK+  +IS +++PYA KLL QEL SM I PR
Sbjct: 1116 SDRYQVYVCDKCHMPAVANQRSSTFECSCCKDRTHISKVEIPYAAKLLFQELMSMAICPR 1175

Query: 1154 L 1154
            +
Sbjct: 1176 I 1176


>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
          Length = 1155

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 397/1156 (34%), Positives = 603/1156 (52%), Gaps = 162/1156 (14%)

Query: 87   IGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN------------------------- 120
            + +PS T  DG +  L P   RL ++TY+AP+ V                          
Sbjct: 17   LSKPSQTEADGTTSTLLPQEARLRNLTYSAPLYVEMKKMVKESIDDGTTSSSQLQWYKEG 76

Query: 121  ---------------------------IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRC 153
                                       +E   G+    +  E   + IG++PIML+S  C
Sbjct: 77   EITKFRNGEIAEPAPIPADFNDDEDEVVEEKHGTKFHSSGAETQTIFIGKVPIMLKSKFC 136

Query: 154  VLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK--------- 204
             LYG  E EL  + ECP D GGYFII G+EKVL+ QE+ + N  I+   KK         
Sbjct: 137  TLYGLTEDELYEIRECPYDMGGYFIINGSEKVLIAQERSAAN--IVQVFKKPAPSPISHV 194

Query: 205  GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK------------IPIMVVMKAMG 252
              I +++   +  + S  V ++ +G    + N  V +            IPI++V +A+G
Sbjct: 195  AEIRSALEHGSRLISSIQV-KLTRGGASSMKNGGVGRSIKTSLPYIKSDIPIVIVFRALG 253

Query: 253  MESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
            +  D +++Q +     D +   +L P IEE     I +QE AL+++ G+ + +  G   +
Sbjct: 254  VIEDGDILQHICYDENDWQMMEMLKPCIEE--GFLIQSQEVALDFI-GR-RGNAVGIKRD 309

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             R   A  IL+  FL ++   +     K +++  ++ R++   L +   DD+D+ G KRL
Sbjct: 310  RRIQFAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRL 369

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            +L+G L++ LF  LF+ +  ++ + +   +    R   F++   +   +IT GL+ +L+T
Sbjct: 370  DLAGPLLANLFRILFRKLSKDIYRYMQRCIE---RGEDFNIVSAVKSTTITSGLKYSLAT 426

Query: 430  GNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            GN+  ++  M  R G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++C
Sbjct: 427  GNWGEQKKAMSSRAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 486

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG+ACGLVKNL+LM  ++      P+  L    G+E L     +E  + N+  V 
Sbjct: 487  PAETPEGQACGLVKNLSLMAGISVGTSSEPISYLLEEWGLEPLSDYDPQE--HKNATRVF 544

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG  +G HR P    D MR+LRR+G I   VS+  + ++R   I +D GRV RPL I D
Sbjct: 545  LNGNWVGTHRDPGMLVDTMRQLRRSGTISPEVSLVRDIREREFKIFTDAGRVYRPLFIVD 604

Query: 609  -------KG--------ISRIKEHHMKELL-------DG--------VRSFDDFLREGLI 638
                   KG        + +I++  ++E+        DG        V  +D  +  G++
Sbjct: 605  NDPDSPRKGNLKITKDDVRKIRDREVEEIAPEEDVDEDGNPAEPIRRVYGWDSLVTNGMV 664

Query: 639  EYLDVNEENNALIALYEGDATPDT-------------------------THIEIEPFTIL 673
            EYLD  EE   LIA+   D  P +                         TH EI P  IL
Sbjct: 665  EYLDAEEEETTLIAMSPEDLLPMSKQDQRREVELDPAKRIKTHINSHSFTHCEIHPAMIL 724

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            GV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL  T+++
Sbjct: 725  GVAASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYNVRMDTMSNILYYPQKPLAKTQSM 784

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E + + +L AGQN  VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y    ++   S
Sbjct: 785  EFLKFRELPAGQNCIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDQERRNGIS 844

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
              +   +P+R+     ++            LDDDGL APG  +  +D+ I K  P+    
Sbjct: 845  IVEEFEKPNRSNTLGFKVGTYEK-------LDDDGLVAPGVRVSGDDIIIGKTVPIPPDT 897

Query: 854  SIMSPTGQTDSRYRSARQTYKG-PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
              +   GQ  ++Y + R         E+ +VD+V L ++  G   +K  +R T+ P++GD
Sbjct: 898  EEL---GQR-TKYHTKRDASTPLRSAESGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGD 953

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KF+SRHGQKG  G   + ED PF+  GI PD+I+NPH  PSRMTV  ++E L  K     
Sbjct: 954  KFASRHGQKGTIGMTYRHEDMPFTAEGIVPDIIINPHCIPSRMTVAHLVECLLSKVAALR 1013

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G     + F +      TV+++S+ L ++G+   G +++Y+G TG  L A I++GP YYQ
Sbjct: 1014 GYEGDATPFTDL-----TVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMAQIYLGPTYYQ 1068

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            +L+HMV DK+HAR  GP   LTRQP EGRAR+GGLR GEMERDC+IA+G +  + ERLM 
Sbjct: 1069 RLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERDCMIAHGVAGFLKERLMD 1128

Query: 1093 SSDPFEVQVCRVCGLL 1108
            SSD F V VC +CGL+
Sbjct: 1129 SSDAFRVHVCGICGLM 1144


>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
            gorilla gorilla]
          Length = 1097

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 341/831 (41%), Positives = 497/831 (59%), Gaps = 41/831 (4%)

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVD 396
            V  M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK +D
Sbjct: 288  VIYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 347

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIG 455
                   R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F  
Sbjct: 348  -------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 400

Query: 456  TLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
            TL H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +
Sbjct: 401  TLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQ 460

Query: 516  EGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK 575
              P++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR   
Sbjct: 461  PSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMD 518

Query: 576  I-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDD 631
            I    VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+ D
Sbjct: 519  IIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQD 578

Query: 632  FLREGLIEYLDVNEENNALIALYEGDATPDT-------THIEIEPFTILGVIAGLIPYPH 684
             +  G++EY+D  EE   ++A+   D            TH EI P  ILGV A +IP+P 
Sbjct: 579  LVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPD 638

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG
Sbjct: 639  HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAG 698

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
             N+ VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      +   +P R 
Sbjct: 699  INSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTR- 757

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTD 863
                E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + S    T+
Sbjct: 758  ----ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TN 807

Query: 864  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 923
             RY     +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG 
Sbjct: 808  RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 867

Query: 924  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 983
            CG   +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK   + G     + F +
Sbjct: 868  CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND 927

Query: 984  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1043
                A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H
Sbjct: 928  ----AVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIH 983

Query: 1044 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1103
            +R  GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC 
Sbjct: 984  SRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCN 1043

Query: 1104 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +CG++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 1044 LCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1094



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 138/259 (53%), Gaps = 30/259 (11%)

Query: 38  FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSGI---DPSIFLRFKDVR 86
           +   +GLV+Q LDSF+ F+   +++IV        +A  +  SG     P   L+F+ + 
Sbjct: 20  YFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIY 79

Query: 87  IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTEKTTMEKNDVVIGRI 144
           + +P+    DG    + P+  RL ++TY+AP+ V+I + V     E+   +     IG+I
Sbjct: 80  LSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKI 139

Query: 145 PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK- 203
           PIMLRS  C+L G  + +L  L ECPLDPGGYFII G+EKVL+ QE+++ N V +   K 
Sbjct: 140 PIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKD 199

Query: 204 -----KGNINASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIMVV 247
                 G   + + +S+    +  V  + +G           ++   L    +++PI++V
Sbjct: 200 SKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIV 259

Query: 248 MKAMGMESDQEVVQMVGRD 266
            +A+G  SD+++++ +  D
Sbjct: 260 FRALGFVSDRDILEHIIYD 278


>gi|340509250|gb|EGR34802.1| DNA-directed polymerase III polypeptide B, putative
           [Ichthyophthirius multifiliis]
          Length = 895

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 322/785 (41%), Positives = 503/785 (64%), Gaps = 20/785 (2%)

Query: 75  DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
           D +  L +  +++  P+   +GV+ K  P   R+S++ Y A ILV+ +            
Sbjct: 10  DNTFLLEYLGIQVQLPAYD-NGVTMK--PQDARISNLAYTANILVDCKLT----FGGEIE 62

Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
              ++ IG++PIM+ S RC++   D+ ++ +L ECP DP GYFIIKG EKV LIQEQL+ 
Sbjct: 63  IIENINIGKLPIMVGSSRCIIGSCDKKDVYKLDECPRDPRGYFIIKGVEKVFLIQEQLAD 122

Query: 195 NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
           NR+ I+ D    + A+V S+T   KS T + ++  K+Y+ ++ F K IPI V+ KA G+E
Sbjct: 123 NRIFIEEDNNKELVANVKSNTVDTKSITQLIIKNHKIYVKVSSFSKPIPIFVLFKAYGVE 182

Query: 255 SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG- 313
           S+QE+ Q++G +  +   L   +E+    +IYTQ++A EYL  +++  TF          
Sbjct: 183 SEQEIFQLIGTEEVFLNRLALCLEDLEQAEIYTQQQAFEYLSKRLRPKTFQEKTYSVRNP 242

Query: 314 --RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
              A  I+ +V L ++P  + N+ P+  ++ VM RR++EA+ +   +D +DY GNKR++ 
Sbjct: 243 IDEARDIITNVVLCHIPCISFNYYPRAIFLGVMARRLLEALEDNSKVDKRDYYGNKRMKC 302

Query: 372 SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR------DSITVGLER 425
           +G  + LLFED FK     ++K ++  + K  ++ +  +S  I        + IT G+  
Sbjct: 303 AGWYLELLFEDKFKQFNMMIRKELNKEIEK-HKNQQHPISNRIRSIMEKNCNIITQGINN 361

Query: 426 TLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
            +STGN+ +KRF+M   G+TQVL+R+S+I  +G MTR++ QF+KSRK++GPR+L  S WG
Sbjct: 362 AISTGNWTIKRFRMDTVGVTQVLSRISYISGIGMMTRMNSQFKKSRKLTGPRSLLGSHWG 421

Query: 486 MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
           ++CP DTP+GE+CGL KNLALM H+T +E +  L  +   LG+E++   S  E+H+ N++
Sbjct: 422 LVCPVDTPDGESCGLTKNLALMAHITIEENKQILSIIALNLGMEEIRHYSTGEIHDGNNY 481

Query: 546 LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
           +V  NG I+G H+ P+ FA+ +R +RR GKIG  +S+  N +++ VY+ +DGGR+CR L+
Sbjct: 482 MVFLNGQIIGLHKDPEKFAEKLRFMRRRGKIGTTISISTNSEKKVVYLDTDGGRLCRLLI 541

Query: 606 IADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHI 665
           +       + E H+K L +  +S+DD ++ G+IEY+DVNEE+N LIA+   + +  TTH+
Sbjct: 542 VVQNKTPILTEEHIKLLKNRQKSYDDLIKMGIIEYIDVNEEDNTLIAIKPEEISKKTTHL 601

Query: 666 EIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQR 725
           EI+P T+LGV++G+IPYPHHNQ+ RNT+QCAMGKQA+G I    + R D+LLY LVYPQ 
Sbjct: 602 EIDPLTLLGVVSGVIPYPHHNQASRNTFQCAMGKQALGIIGSTSMSRADTLLYQLVYPQT 661

Query: 726 PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
           PL+ T+TIE  GYD+  AG NA++AV+SYSGYDIED++V+NK+SLDRGFGR +V K+Y  
Sbjct: 662 PLMKTKTIEYTGYDQFPAGHNASIAVLSYSGYDIEDSVVLNKASLDRGFGRTMVYKRYET 721

Query: 786 INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL-ILDDDGLAAPGEIIKPNDVYIN 844
             Q+Y    ++ +L+P +   G+   +   +  L     LD DG+   G  +   D+ +N
Sbjct: 722 EMQRYKVGVAEIVLQPPKEVEGSNYKK--QNKGLRKYGALDHDGVGIVGAPVNNGDILVN 779

Query: 845 KESPL 849
           K +P+
Sbjct: 780 KYTPV 784


>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
 gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
          Length = 1202

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 399/1219 (32%), Positives = 636/1219 (52%), Gaps = 110/1219 (9%)

Query: 11   KDEQLPDKQKLAAPVKSVVDKFQLLPEFLK---VRGLVKQHLDSFNYFVNTGIRKIVRAN 67
            KDE   +++ + A +      + L+    K   ++ L++  ++S+NY VNT + + +   
Sbjct: 16   KDETNTNEKSVVAKINDEEAPWALIESHFKNQHLKQLIRHQIESYNYLVNTQLEQTIAMF 75

Query: 68   D--RIVSGIDPS---------IFLRFKDVRIGQPSM-TVDGVSEKLNPHMCRLSDMTYAA 115
            +  RI S  D             +  ++  I +P +   +G ++ + P   RL + TYA 
Sbjct: 76   NPIRICSEHDWEKEYNLHRLVAHVTLENFNIHRPQVYENNGATKIMFPQEARLRNFTYAG 135

Query: 116  PILV--NIEY-VQGSHTEKTTMEKNDVV----IGRIPIMLRSCRCVLYGKDEAELARLGE 168
             + V  NI+Y V+     K T   N V+    IG++PIMLRS  CVL         + GE
Sbjct: 136  AMTVDLNIKYTVRNGENYKNTQTYNKVLKNIHIGKLPIMLRSDICVLSQYKHLNTDQTGE 195

Query: 169  CPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEK 228
            C +DPGGYFII G+EK  L QE+ ++N++      K N   +  +  + +     I  ++
Sbjct: 196  CKMDPGGYFIINGSEKTCLAQERAAENQIACFNISKNNTKWTWNAEMKCIPHWKCISPKQ 255

Query: 229  -------------GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSAL 272
                           +YL + +    IP+ ++ +A  + SD++V + V     D ++  +
Sbjct: 256  INLYRSTKDNGFGNSIYLQIPRLKNPIPLFIIFRAFNIISDKDVCEKVILDIDDKKHRRM 315

Query: 273  LLPSIEECANLDI-YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHN 331
            L        + +   T E AL Y+   V      +P N  +   +    D  L    V N
Sbjct: 316  LYGLQGSIVDANTCLTYEDALNYIISNV----IYTPLNVDKETGYKRKHDFALE---VIN 368

Query: 332  NNFRPKC-------FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
            N+  P C       + +  M  ++++         D+D   NKR++L+G L++ LF +  
Sbjct: 369  NDIFPHCRTTAQKVYMLGYMTNKLLQTSFGWMEPTDRDSYLNKRVDLTGSLINNLFRNYL 428

Query: 385  KTMISEVQKTVDIILSKPSRSSRFDLSQFI-------VRDSITV--GLERTLSTGNFDVK 435
              ++ ++QK V   ++  S  S  D    I       +  S+T+  G++R L+TG+F +K
Sbjct: 429  NKLVKDMQKQVVREINSGSWKSNEDYENIINSTNIYKIIKSVTIENGIKRALATGDFGIK 488

Query: 436  RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
            +   ++ G+ QVL RL++I ++ H+ RV+   +KS K+  PR L  S WG LCP +TPEG
Sbjct: 489  QINSNKVGVAQVLNRLTYISSISHLRRVNTPIDKSGKLVPPRRLHNSSWGFLCPAETPEG 548

Query: 496  EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL--SGEELHNPNSFLVIFNGLI 553
             + G+VKNL+ MTHVT       L      + V D+E L  + + LH+     V  NG+ 
Sbjct: 549  ASVGIVKNLSYMTHVTIPTNTTILYDYIMPM-VTDIETLGDNAKSLHD--KVKVFINGVW 605

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G    P      +++ +  G I  + SV  + K   + + +D GR+ RP++  +     
Sbjct: 606  VGITEEPLELFKNIKEKKYKGIINIYTSVIFDCKLLEIKVCNDAGRLTRPVLKVENNAVL 665

Query: 614  IKEHHMKELLDGVRS----FDDFLREG-----LIEYLDVNEENNALIALYEGDATPDT-- 662
                + KEL   VR+    ++D L  G      IEY+D NE+NN +IA+ E D    T  
Sbjct: 666  ----YTKELFHKVRAGELNWNDLLYSGKIPQSAIEYIDSNEQNNTMIAM-EPDQLTATDS 720

Query: 663  ------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                  +H EI P TI GV+A  IP+P +NQSPRNTYQ AMGKQA+G    N   RMD  
Sbjct: 721  KYVYHYSHCEIHPSTIFGVVASCIPFPENNQSPRNTYQSAMGKQALGMYVTNYDNRMDKT 780

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
             Y+L YP RPL+ TR ++++  + + +G+   VA+MS+SGY+ ED+++ NK S+DRG   
Sbjct: 781  AYVLSYPMRPLVDTRLMDIIKLNTIPSGEQVIVAIMSHSGYNQEDSVLFNKGSIDRGLFL 840

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
              +       ++K   +   R  +PD+T    + M+  ++  +     +  GL     ++
Sbjct: 841  ATIYHTEKDEDKKLYGNEEMR-CKPDKTK--TKNMKFANYDKI-----NSQGLVPENTLV 892

Query: 837  KPNDVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +  D+ I K  P+ E +         TD       +++    GE   +D+    S+ +G 
Sbjct: 893  EDRDIIIAKVLPIKENKNDYTKTIKYTD-------ESHVHRTGEETFIDKNYSESNGDGY 945

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
               K  +R  RRP +GDKFSSRHGQKG  G I++++D PF+  G+ PD+I+NPH  PSRM
Sbjct: 946  NFCKVRLRSVRRPVIGDKFSSRHGQKGTIGNIIEEKDMPFTADGLKPDIIINPHAIPSRM 1005

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+ ++ E L GK  +  G +  G++F +       +  I+  L K G+  NG +++Y+ +
Sbjct: 1006 TIAQLKETLLGKVLIQMGLYGDGTSFSKFK-----IGDIASELQKLGYESNGNEVMYNAL 1060

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            TG  + + IF+GP +YQ+LKHMV DK H+R  GP V LTRQP EGRAR+GGLR GEMERD
Sbjct: 1061 TGEQMPSSIFIGPAFYQRLKHMVNDKQHSRSIGPMVNLTRQPAEGRARDGGLRFGEMERD 1120

Query: 1076 CLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLP 1135
            C+I++GAS     RL  +SD + V VC  CGL+  YN   +  IC+TC+N  +   +++P
Sbjct: 1121 CMISHGASRFTKGRLYDASDAYSVHVCNKCGLIASYNKAQQIHICNTCENRTDFRYVEIP 1180

Query: 1136 YACKLLIQELQSMNIVPRL 1154
            Y+CKL+ QEL +MNI PR+
Sbjct: 1181 YSCKLMFQELYTMNIAPRI 1199


>gi|13542013|ref|NP_111701.1| DNA-directed RNA polymerase subunit B [Thermoplasma volcanium GSS1]
 gi|14325446|dbj|BAB60350.1| DNA-directed RNA polymerase B [Thermoplasma volcanium GSS1]
          Length = 1195

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 414/1233 (33%), Positives = 640/1233 (51%), Gaps = 149/1233 (12%)

Query: 33   QLLPEFLKVRGLVKQHLDSFNYFV------NTGIRKIVRANDRIVSGIDPSIFLR----- 81
            +++  + K  G+V   LDS N F       N+ +++IV    ++    DP  F+      
Sbjct: 3    EIVDAYFKKYGIVNHQLDSMNSFYASSDNPNSVMQQIVDET-KVSDDADPGFFVLDPAKT 61

Query: 82   -FKDVRI-------------------GQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN 120
               D+RI                   G+P +    G S ++ P+  RL D+ Y AP+ + 
Sbjct: 62   GGHDIRIYYGRVRENGHYVGEQTIFVGKPEIKEASGASNQITPNEARLRDLNYMAPVTLK 121

Query: 121  IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD----------------EAELA 164
            +  V+    EK +     + +G IP+M+RS  C L   +                  +L 
Sbjct: 122  LRIVEDG-IEKGS---ETIKVGDIPVMVRSKICTLAEGNLDQYIEKNNGPIGLSRREKLQ 177

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSS-TETVKSKTV 223
             +GE P DPGGYFII G+E+V++  E L+ N+++++ + +      V    ++    + +
Sbjct: 178  YVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMVEWEDRYESKVEVAKVFSQRGGFRAL 237

Query: 224  IQMEKGK---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC 280
              MEKG    + + +      +P++++MKA+G+E D +V   +   P    ++  +IE+ 
Sbjct: 238  TSMEKGSDGTINVSIPSVAGTVPLVILMKALGLERDVDVHDAIASVPEMEPIIYANIEDS 297

Query: 281  ANLDIY------TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
             N  I       T E A+ YLE   KR   G     R+ +   +L    L ++    ++ 
Sbjct: 298  KNPKILPPNGVNTTEDAISYLE---KRFAAGQAKEFRDKKISQMLDHSLLPHLGDSASDR 354

Query: 335  RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
              K  Y+  M R ++E  L     DDKD++ NKR++L+G L+  LF   F++++ +++  
Sbjct: 355  IRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLKYQ 414

Query: 395  VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFI 454
            ++   +   R     +   + +D +T  +   +STGN+        R G++Q+L R+S +
Sbjct: 415  LEKTYN---RKRGIKIRPAVRQDLLTQRILHAMSTGNW-----IGGRTGVSQLLDRVSNL 466

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             T+ H+ R+     +++     R L P+QWG +CP +TPEG+ CGLVKN AL+ +VT   
Sbjct: 467  STISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGI 526

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
            +   ++ +   + V+  E+L      +PN   V  NG  +G H  P+     +R+ RRAG
Sbjct: 527  DSETVMEILKGMDVK--EVLE----ESPNKGRVYLNGDFVGYHDDPRYLVRRLREERRAG 580

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR 634
            +I + ++V  ++    V +  D GR+ RPL++   G + I E  +++L     SF+D ++
Sbjct: 581  RISDEINVRYDDNTNEVIVNCDRGRLRRPLLVLKDGRTVITEDMIEKLRKDEYSFEDLVK 640

Query: 635  EGLIEYLDVNEENNALIALYEGDA------------------------------------ 658
             G +E+LD  EE +A +A+Y  +                                     
Sbjct: 641  VGALEWLDAEEEEDAYVAVYAYNIPEKCPHCSSYLYRSMVDWSNPGSNNIILECGFCYNK 700

Query: 659  -------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                   TP+ TH+EI+P  ILGV+A +IPYP HN SPR T   AM KQ++G    N   
Sbjct: 701  FEVPSLITPEHTHLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQSLGFAQSNVRI 760

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R D+  +LL YPQ PL+ TR +E   YD+  AGQN  VAV+SY GY+I+DA+V+NK+++D
Sbjct: 761  RPDTRGHLLHYPQVPLVRTRVMEYTHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAID 820

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG GR    + Y+A  ++Y     D+   P     GA   +  ++ N     LD+ G+  
Sbjct: 821  RGLGRSTFFRTYSAEERRYPGGQEDKFEIPTHDVIGARAEE--YYKN-----LDESGIIY 873

Query: 832  PGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            P   ++ +DV I K SP   LE     + P      R R +  T +    E+  VD V L
Sbjct: 874  PEAYVEGSDVLIGKTSPPRFLEEGEERLGP-----QRRRESSVTMR--PNESGYVDNVFL 926

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
               ++    +K  +R  R PELGDKF+SRHGQKGV G +V QED PF+E GI PDLI NP
Sbjct: 927  TVSESNSRVVKIKVRSERIPELGDKFASRHGQKGVIGLVVPQEDMPFTEEGIIPDLIFNP 986

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKHGFSYNG 1007
            H  PSRMTVG ++E++GGK     G+F  G+ F GEP       +S+ + LVK+GF  +G
Sbjct: 987  HSIPSRMTVGHILEMIGGKIASRTGKFIDGTIFSGEPE------KSLRDELVKYGFRKSG 1040

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y GITG   +A IF+G IYYQKL HMV  K HAR  GP  +LTRQPTEGR+R GGL
Sbjct: 1041 TEVMYDGITGRKFRADIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGL 1100

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC--RVCGLLGYYNHKLKAGICSTCKN 1125
            R GEMERD LIA+GA+M+I +RL+  SD   + VC    CG +  Y+ +     C  C N
Sbjct: 1101 RFGEMERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCPVCGN 1160

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
              NI  ++  YA KL+  EL S+ +V RL L +
Sbjct: 1161 TGNIYPIETSYAFKLMRDELISLGVVMRLMLGD 1193


>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
 gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
          Length = 1182

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 394/1141 (34%), Positives = 609/1141 (53%), Gaps = 115/1141 (10%)

Query: 42   RGLVKQHLDSFNYFVNTGIRKIV-RANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEK 100
            +GLV Q +DSF+ F +T I+ +V     R    I+  + L+  D              E+
Sbjct: 60   KGLVAQQIDSFDEFTSTTIQSLVDEVTKRARVAINEEVALKDMD--------------EE 105

Query: 101  LNPHMCRLSDMTYAAPILVNIEYVQGSHTE---KTTMEKNDVV-IGRIPIMLRSCRCVLY 156
               +M R    T  AP  +  E      TE   K   +K D++ +G++P+M++S  C L 
Sbjct: 106  QQEYMAR----TGEAPKTIRWEEEDTGPTEGSGKGGEDKGDLIFLGKLPVMVKSQVCHLA 161

Query: 157  GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINASVTS 213
            G+D+  L  L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A + S
Sbjct: 162  GEDDESLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRS 221

Query: 214  STET-VKSKTVIQM--------EKGKMY----LLLNQFVKKIPIMVVMKAMGMESDQEVV 260
            + E   +  + +QM        EKG++     + L    + + + +V +A+G+ SD++++
Sbjct: 222  ALEKGSRLISSLQMKLHSKGSPEKGRLANTVSVTLPYVREDVSLGIVFRALGIVSDEDIL 281

Query: 261  QMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFS 317
              +  D   + +L    P IEE     I  +E AL+++ GK      G    +R   A  
Sbjct: 282  NHICYDRTDTQMLEALRPCIEEA--FCIQDREIALDFI-GKRGNGNAGQNRMNRVRAAKD 338

Query: 318  ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVS 377
            +L+   L ++         K F++  M+ R+++  L +   DD+D+ G KRL+L G L++
Sbjct: 339  LLQKEMLPHISQTEGCETRKAFFLGYMVHRLLQCALGRRDPDDRDHFGKKRLDLPGPLLA 398

Query: 378  LLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKR 436
             LF ++ + M  ++   +   +     +  F L   I   ++T GL+ +L+TGN+ D K+
Sbjct: 399  KLFRNVIRRMTQDLMSYMKRCIDT---NKNFSLPLGIKHSTLTNGLKYSLATGNWGDQKK 455

Query: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496
                  G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+
Sbjct: 456  AASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 515

Query: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556
            ACGLVKNL+LM +V+      P++      G+E LE    E L  PN+  V  NG  +G 
Sbjct: 516  ACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLEEY--EPLRYPNATKVFVNGTWVGV 573

Query: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI---------- 606
            H+ PK    +++ LRR   I   VS+  + + R   I SD GRV RPL            
Sbjct: 574  HQDPKHLVTLVQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEPNGESG 633

Query: 607  ADKGISRIKEHHMKEL-LDG--------VRSFDDFLREGLIEYLDVNEENNALIALYEGD 657
            A+ G   + + H+  L +D            +   L+ G IEYLD  EE   +I +   D
Sbjct: 634  AEMGALILNKDHIGRLKMDAELGKYHPDYWGWQGLLKSGAIEYLDAEEEETVMICMTPQD 693

Query: 658  -----------ATPDT-------------------THIEIEPFTILGVIAGLIPYPHHNQ 687
                         PD                    TH EI P  +LG+ A +IP+P HNQ
Sbjct: 694  LDQFRARKMGRIEPDNSGLGNNRIKTKPNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQ 753

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA
Sbjct: 754  SPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNA 813

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P+R+   
Sbjct: 814  IVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPNRS--- 870

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
             + +++ H +      LD DG+ APG  +   D+ I K  P+    + +   GQ  +++ 
Sbjct: 871  -DTLRLKHST---YDKLDADGIVAPGIRVSGEDIIIGKTCPINPDNAEL---GQRSNQHV 923

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
                +      E+ ++D+V + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G  
Sbjct: 924  KRDASTPLRSTESGIIDQVVMTTNQDGMRYVKVRVRTTKVPQIGDKFASRHGQKGTIGVT 983

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
             +QED PF+  GI PD+I+NPH  PSRMT+  +IE L  K     G     + F +    
Sbjct: 984  YRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFTDV--- 1040

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
              TV+S+S+ L +HG+   G +++Y G TG  L++ IF GP YYQ+L+HMV DK+HAR  
Sbjct: 1041 --TVDSVSDLLREHGYQSRGFEIMYHGHTGRKLRSQIFFGPTYYQRLRHMVDDKIHARAR 1098

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP  ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V +C +CGL
Sbjct: 1099 GPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGL 1158

Query: 1108 L 1108
            +
Sbjct: 1159 M 1159


>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
          Length = 807

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 343/828 (41%), Positives = 497/828 (60%), Gaps = 41/828 (4%)

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIIL 399
            M+ R++ A L +  +DD+D+ GNKRL+L+G L++ LF  +FK ++ EV    QK +D   
Sbjct: 1    MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID--- 57

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLG 458
                R   F+L   I    I+ GL+ +L+TGN+ D K+    R G++QVL RL+F  TL 
Sbjct: 58   ----RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS 113

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R++    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P
Sbjct: 114  HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP 173

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-G 577
            ++       +E+LE +S   + +     V  NG  +G H+ P+   + +RKLRR   I  
Sbjct: 174  ILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQMDIIV 231

Query: 578  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSFDDFLR 634
              VS+  + ++R + I +D GR+CRPL+I +K    +K+ H+ +L +      S+ D + 
Sbjct: 232  SEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVA 291

Query: 635  EGLIEYLDVNEENNALIALYEGDATPDT-------THIEIEPFTILGVIAGLIPYPHHNQ 687
             G++EY+D  EE   ++A+   D            TH EI P  ILGV A +IP+P HNQ
Sbjct: 292  SGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQ 351

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+
Sbjct: 352  SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINS 411

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA+ SY+GY+ ED+++MN+S++DRGF R +  + Y     K      +   +P R    
Sbjct: 412  IVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTR---- 467

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTDSRY 866
             E  Q + H+  +   LDDDGL APG  +  +DV I K   L E    + S    T+ RY
Sbjct: 468  -ETCQGMRHA--IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TNRRY 520

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 926
                 +      ET +VD+V +  ++ G    K  +R  R P++GDKF+SRHGQKG CG 
Sbjct: 521  TKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 580

Query: 927  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 986
              +QED PF+  GI PD+I+NPH  PSRMT+G +IE L GK  VS  +   G A   P  
Sbjct: 581  QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGDA--TPFN 636

Query: 987  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1046
             A  V+ IS  L  +G+   G +++Y+G TG  + + IF+GP YYQ+LKHMV DK+H+R 
Sbjct: 637  DAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 696

Query: 1047 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1106
             GP  +L RQP EGR+R+GGLR GEMERDC IA+GA+  + ERL  +SDP++V VC +CG
Sbjct: 697  RGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCG 756

Query: 1107 LLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            ++   N +     C  C+N   IS +++PYACKLL QEL SM+I PR+
Sbjct: 757  IMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 804


>gi|390342646|ref|XP_782970.3| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC2 [Strongylocentrotus purpuratus]
          Length = 831

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/589 (53%), Positives = 422/589 (71%), Gaps = 9/589 (1%)

Query: 17  DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76
           DK+ L+AP+K+V DK++LLP FLKVRGLV+QH+DSFNYF+N  +  ++  N  I +    
Sbjct: 28  DKELLSAPIKAVKDKWKLLPAFLKVRGLVRQHIDSFNYFINVEVXHLISLNLSIYNKXTL 87

Query: 77  -SIFLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
             + LR+ ++ +G P +     +++  +PH CRL DMTY+API V+IEY +G    +  +
Sbjct: 88  LHLPLRYLNIYVGSPDVEESFNITKPTSPHECRLRDMTYSAPITVDIEYTRG----QQRV 143

Query: 135 EKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSK 194
            +N++ IGR+PIMLRS  CVL GK  AELA+L ECPLDPGGYFI++GTEKV+LIQEQLSK
Sbjct: 144 IRNNLPIGRMPIMLRSSNCVLTGKSPAELAKLNECPLDPGGYFIVRGTEKVILIQEQLSK 203

Query: 195 NRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGME 254
           NR+I++ D+KG ++ +VTSST   KS+TV+ ++KGK YL  N F + IPI+V+ KAMGME
Sbjct: 204 NRMIVEVDRKGIVSCNVTSSTHERKSRTVVIVKKGKHYLKHNTFTEDIPIVVIFKAMGME 263

Query: 255 SDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFGSPPNDRE 312
           SDQE+VQ +G +         ++EEC  + +YTQ +AL+Y+  KV+  R   G     + 
Sbjct: 264 SDQEIVQTIGTEESTMVSFASNLEECHKIQVYTQLQALKYMGMKVRQRRMWGGGSKKSKV 323

Query: 313 GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
             A  +L    LA++PV   NFR K  Y+A+M+RR++EA  +   +DD+DY GNKRLEL+
Sbjct: 324 DEARELLATTILAHIPVVQFNFRAKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELA 383

Query: 373 GQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
           GQL++LLFEDLFK   SE++K  D  + +P R+++FD+ +++ +D IT GL   +STGN+
Sbjct: 384 GQLIALLFEDLFKKFNSELKKYADQNIPRP-RAAQFDIVKYMRQDQITNGLITAISTGNW 442

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
            VKRFKM R G+TQVL+RLS+I  LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DT
Sbjct: 443 SVKRFKMERAGVTQVLSRLSYISCLGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 502

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
           PEGE CGL+KNLALMTH+TTD EE P++ L + LGVE + L+SGEEL   + ++V  NG 
Sbjct: 503 PEGEGCGLIKNLALMTHITTDMEEAPIVKLAFNLGVEPVHLMSGEELSMKDVYVVFLNGN 562

Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601
           ILG  R  K      R +RRAG I EFVS+  N  QRCV IASDGGRVC
Sbjct: 563 ILGVVREHKRLMRTFRLVRRAGYISEFVSICPNHAQRCVTIASDGGRVC 611



 Score =  306 bits (785), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/212 (68%), Positives = 167/212 (78%), Gaps = 11/212 (5%)

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            IMNPHGFPSRMTVGK+IE L GKAGV  G+FHYG+AFG      D V  I E L KHGF+
Sbjct: 626  IMNPHGFPSRMTVGKLIEFLAGKAGVLEGKFHYGTAFG-----GDKVVDICEDLRKHGFN 680

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            Y GKD + SGITG PL AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGRAR+
Sbjct: 681  YLGKDFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRARD 740

Query: 1065 GGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCK 1124
            GGLR+GEMERDCLI YGASML+ ERLM+SSD F+V VC  CGL+G+      +G C  C 
Sbjct: 741  GGLRLGEMERDCLIGYGASMLLLERLMISSDQFQVDVCGDCGLIGH------SGWCPYCH 794

Query: 1125 NGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
               NISS+++PYACKLL QELQSMNI+PRL+L
Sbjct: 795  CSQNISSLRIPYACKLLFQELQSMNIIPRLRL 826


>gi|322511148|gb|ADX06461.1| putative DNA directed RNA polymerase II [Organic Lake phycodnavirus
            2]
          Length = 1162

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 392/1187 (33%), Positives = 626/1187 (52%), Gaps = 94/1187 (7%)

Query: 30   DKFQLLPEFLK---VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
            D + ++  + K   +  LVK  +DS+N F+   + K +   + +V       F  +K  R
Sbjct: 6    DSWNVIESYFKHIHLHQLVKHQVDSYNDFIQNQMMKTIDMFNPLVVKSPHDYFPEYKTYR 65

Query: 87   -----------IGQPSMTVDGVSEKLN-PHMCRLSDMTYAAPILVN--IEYV-----QGS 127
                       I +P +  +  S KL  P   RL + TY++ I ++  I+Y+     +  
Sbjct: 66   LEVEIVFENLSIYRPEIHENNGSTKLMFPSDARLRNFTYSSNITLDMKIKYIIRNGERLE 125

Query: 128  HTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
            + E   +  + +  G+IPIML SC CVL          + EC +DPGGYFII G+EK  L
Sbjct: 126  NEEYKYIHLSKIQFGKIPIMLNSCICVLKQYPNIHPDNIDECKMDPGGYFIINGSEKTCL 185

Query: 188  IQEQLSKNRVIIDTDKKGN---INASVTS--STETVKSKTVIQMEKGKM-------YLLL 235
             QE+ + N++     K GN     A   S    + +  K +  M   K+        + L
Sbjct: 186  GQEKPADNKIFCFKQKPGNKWLWTAEYRSVPDWKCISPKQIYMMVHSKLSCYGHEILVQL 245

Query: 236  NQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLL----PSIEECANLDIYTQEKA 291
             +  K IP+ V+ +A+G+ESD+++  +V  D      +L     SI E  + + Y  E +
Sbjct: 246  PRLKKPIPLFVLFRALGVESDKQICSLVVLDIEKETSILDYLKASIYEGTSYNNY--EDS 303

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            LEY+   V  +      ++   +      DV   ++  H      K + +  M  ++++ 
Sbjct: 304  LEYIISNVIYTPINMDKDEGHKKKTEFALDVLSNDLFPHCKTKEEKVYLLGFMTNKLIKC 363

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
                +   ++D   NKR+EL+G L++ LF + F  ++ ++QK V   ++  S  S  D S
Sbjct: 364  FCGMEQQTNRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQVIREINNGSWKSSEDYS 423

Query: 412  QFIV---------RDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
              I            +I  G++R LSTG+F +K    ++ G+ QVL RL+++ TL H+ R
Sbjct: 424  NIITLTNIYKIVKSTTIENGIKRALSTGDFGIKSMNTNKVGVAQVLNRLTYLSTLSHLRR 483

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
            V+   +KS K+  PR L  S WG LCP +TPEG++ G+VKNL+ MT+V+T  +  P+   
Sbjct: 484  VNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNLSYMTNVSTYSDSTPIYEY 543

Query: 523  C--YCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
               Y      L+  +  E ++     V  NG  +G   +P      +++ +  G I  + 
Sbjct: 544  IQPYLFA---LDHYNTTEFYDKVKIFV--NGRWIGVTNQPNELFLSLKEKKYKGMIHIYC 598

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFL-----RE 635
            S+  N K + +Y+ ++ GR+ RPL    +    + +   +++ +    + D +      +
Sbjct: 599  SIVFNYKLKEIYVCNECGRLVRPLFKVKQNKILLTKDMTEQIKEDKLVWRDLILPLKTED 658

Query: 636  GLIEYLDVNEENNALIA----LYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRN 691
             +IEY+D  E+N ++I     L++ + +   TH EI P TI GV+A  IP+P HNQSPRN
Sbjct: 659  SIIEYIDAEEQNTSMICMKPNLFQDNYS--YTHCEIHPSTIFGVLASCIPFPQHNQSPRN 716

Query: 692  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 751
            TYQCAMGKQA+G    N   RMD   Y+L Y  RPL+ TR + ++  ++L  G    VA+
Sbjct: 717  TYQCAMGKQAIGIYVSNFNKRMDKTAYVLNYTMRPLVETRVMNMMKLNELPCGNQVIVAI 776

Query: 752  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER- 810
            M++SGY+ ED++++NK SLDRG     +       ++K       RI    +  P   R 
Sbjct: 777  MTHSGYNQEDSVLINKGSLDRGLFHATIYHTEKDEDKKINGEEELRI----KPNPNLTRN 832

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
            M+  ++  +  + + ++      + I  + V + K+   +    +         +Y    
Sbjct: 833  MKFGNYDKINKMGVMNENEIIEDKDIIISKVVVIKDHKNDNTKLV---------KYEDQS 883

Query: 871  QTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
            ++Y+    E C VD+  +  D+NGD    C K  IR  R+P +GDKFSSRHGQKG  G I
Sbjct: 884  KSYRTT--EECYVDKTYI--DRNGDGYTFC-KVRIRAMRKPNIGDKFSSRHGQKGTVGNI 938

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
            ++++D PF++ G+ PD+I+NPH  PSRMT+ ++ E L GK  +  G F  G++FGE    
Sbjct: 939  IEEQDMPFTKEGVRPDIIINPHAIPSRMTIAQLKETLVGKLLLKLGLFGDGTSFGEMD-- 996

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
               +  + + L KH +   G +++Y G TG  ++  IF+GP+YYQ+LKHMV DK H+R  
Sbjct: 997  ---MNEVYKELQKHNYESKGNEVLYDGKTGEQIKTSIFIGPVYYQRLKHMVNDKQHSRCI 1053

Query: 1048 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGL 1107
            GP V LTRQP EGR+R+GGLR GEMERDC+I++GAS    ER+   SD + V VC+ CG+
Sbjct: 1054 GPMVNLTRQPAEGRSRDGGLRFGEMERDCMISHGASKFTKERIYDVSDKYAVNVCKKCGM 1113

Query: 1108 LGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
            +  YN K    IC+ C+N  + S +K+PY+CKLL QEL +MNIVPR+
Sbjct: 1114 IAVYNDKEHIHICNVCENRTDFSYVKIPYSCKLLFQELITMNIVPRI 1160


>gi|390366248|ref|XP_783205.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like, partial
            [Strongylocentrotus purpuratus]
          Length = 541

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 315/558 (56%), Positives = 378/558 (67%), Gaps = 22/558 (3%)

Query: 603  PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
            P +I +    R+ + HM EL  G R F+DFLREGL+EYL         ++        +T
Sbjct: 1    PYIIVENLKPRVLDKHMTELSQGFRCFEDFLREGLVEYLXXXXXXXXXLSFLSFIPNRET 60

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH+EIEPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMG IA+NQ  R+D+L+YLL Y
Sbjct: 61   THLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYLLAY 120

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            P  PL+ ++TI+L+G+DKL AGQNA VAVMSYSGYDIEDA+++NK+S+DR     +    
Sbjct: 121  PMAPLVKSKTIDLIGFDKLPAGQNAVVAVMSYSGYDIEDALILNKASVDRAL--LLRGPG 178

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
                      +                   +  H      ILD DG+ APGE +    V 
Sbjct: 179  SGNNGGDDGGTGGXXXXXXXXXXXXXXXXXIWRHR-----ILDADGVCAPGERVINKQVL 233

Query: 843  INKESPLETRGSIM-SPTGQTDSR-YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            +NK  P+     +  SPT Q     YR    TYKG       +++V + S+       K 
Sbjct: 234  LNKSMPVVNMNPLQASPTNQPQQHDYREVPITYKGT--ADSYIEKVLVTSNPEEAFLFKV 291

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
            L+R TRRPE+GDKFSSRHGQKGVCG IVQQED PF ERGICPD+IMNPHGFPSRMTVGK+
Sbjct: 292  LLRQTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFDERGICPDIIMNPHGFPSRMTVGKL 351

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            IE L GKAGV  G+FHYG+AFG      D V  I E L KHGF+Y GKD + SGITG PL
Sbjct: 352  IEFLAGKAGVLEGKFHYGTAFG-----GDKVVDICEDLRKHGFNYLGKDFLTSGITGEPL 406

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1080
             AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGRAR+GGLR+GEMERDCLI Y
Sbjct: 407  TAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRARDGGLRLGEMERDCLIGY 466

Query: 1081 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKL 1140
            GASML+ ERLM+SSD F+V VC  CGL+G+      +G C  C    NISS+++PYACKL
Sbjct: 467  GASMLLLERLMISSDQFQVDVCGDCGLIGH------SGWCPYCHCSQNISSLRIPYACKL 520

Query: 1141 LIQELQSMNIVPRLKLAE 1158
            L QELQSMNI+PRL+L +
Sbjct: 521  LFQELQSMNIIPRLRLKK 538


>gi|296421978|ref|XP_002840540.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636758|emb|CAZ84731.1| unnamed protein product [Tuber melanosporum]
          Length = 660

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/602 (50%), Positives = 414/602 (68%), Gaps = 30/602 (4%)

Query: 19  QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
           + LA  + +  DK+ LLP FLKV+GLVKQH+DSFNYF++  ++KIV+AN+R++S  DP  
Sbjct: 61  KHLADSISTAEDKWTLLPMFLKVKGLVKQHIDSFNYFIDVDLKKIVKANERVLSDADPQF 120

Query: 79  FLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND 138
           FLR+ D+R+G P       + ++ P+ CRL D+TYAAPI V++EY +G    K  + K  
Sbjct: 121 FLRYLDIRVGTPERLDIESNAEITPNECRLRDLTYAAPIFVDVEYSRG----KQIVRKRA 176

Query: 139 VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
           V IGR+PIMLRS +CVL GK E ++ARL ECPLDPGGYF++ GTEKV+L+QEQLSKNR+I
Sbjct: 177 VNIGRLPIMLRSNKCVLSGKGEMDMARLNECPLDPGGYFVVNGTEKVILVQEQLSKNRII 236

Query: 199 IDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
           ++ D KKG + ASVTSST   KSKT I  +KG +YL  N  V  +PI++V+KAMG++SD 
Sbjct: 237 VENDAKKGVVQASVTSSTHERKSKTYIISKKGCIYLRHNSIVDDMPIVLVLKAMGVQSDH 296

Query: 258 EVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG--R 314
           E++ +V G D  Y      + EEC+ L +++Q++ALEYL  +V++  F  P   R     
Sbjct: 297 EILLLVAGTDMVYQDTFSINFEECSKLKVFSQQQALEYLGARVRKQRFIGPMKQRTTVQE 356

Query: 315 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
           A   L D+ LA+V V N NFRPK  Y+A M RR+V AM +   +DD+DYVGNKRLEL+GQ
Sbjct: 357 ALQCLADIVLAHVYVENLNFRPKAMYLAFMTRRVVMAMTDPSLVDDRDYVGNKRLELAGQ 416

Query: 375 LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS--ITVGLERTLSTGNF 432
           L+SLLFEDLFK   S+++  +D +L KP+R+  FD S  +   +  IT G+ R +STGN+
Sbjct: 417 LLSLLFEDLFKKFNSDMKLNIDKVLKKPNRTEEFDASTLLYTGANLITHGMNRAISTGNW 476

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
            +KRFKM R G+T                     FEK+RKVSGPRALQPSQ+G+LCP DT
Sbjct: 477 SLKRFKMERAGVTH--------------------FEKTRKVSGPRALQPSQFGLLCPSDT 516

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
           PEGEACGLVKNLALMTH+TTD+EE P+  L + LG ED  +L+G EL+ P ++++  NG 
Sbjct: 517 PEGEACGLVKNLALMTHITTDDEEEPIKKLVFALGAEDATILTGHELYAPGAYIIFINGT 576

Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
           + G  R P  F    R LRR GK+ EF+S++VN     V+IA+DGGR+CRPL+I + G S
Sbjct: 577 LHGLTRFPMKFLRSFRNLRRNGKVSEFISIYVNHHHNGVHIATDGGRICRPLIIVENGRS 636

Query: 613 RI 614
           ++
Sbjct: 637 KL 638


>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Candida tropicalis]
          Length = 1020

 Score =  610 bits (1574), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 376/1050 (35%), Positives = 560/1050 (53%), Gaps = 113/1050 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY---- 232
            +EKVL+ QE+ + N  I+   KK   +     A + S+ E  K   +I   + K+Y    
Sbjct: 1    SEKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--KGSRLISSMQIKLYGRDE 56

Query: 233  ---------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEEC 280
                       L    + IPI++V +A+G+  D ++++ +     D +   +L P +EE 
Sbjct: 57   KGVAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE- 115

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
                I  +E AL+++    +R   G     R   A  IL+   L N+         K F+
Sbjct: 116  -GFVIQEREVALDFIG---RRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFF 171

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
            +  M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   + 
Sbjct: 172  LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRCVE 231

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGH 459
                 S F+L+  +   +IT GL  +L+TGN+  +R  M  R G++QVL R ++  TL H
Sbjct: 232  N---DSDFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSH 288

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LMT ++      P+
Sbjct: 289  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSSSEPI 348

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            +      G+E LE       + P+S  +  NG+ +G HR P    D +R LRR+G I   
Sbjct: 349  LGFLRDFGLEVLEDYVPS--NAPDSTRIFVNGVWVGVHRDPAQLVDYVRDLRRSGDISPE 406

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVR----- 627
            VS+  + +++   I +D GRV RPL I D       KG   I + H+++L+         
Sbjct: 407  VSIIRDIREKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITKEHIRKLVAEDMDDDEL 466

Query: 628  ------------SFDDFLREGLIEYLDVNEENNALIALYEGDA----------------- 658
                        ++   + EG++ Y+D  EE   +IA+   D                  
Sbjct: 467  EEDEEGGESRKYTWSSLVSEGIVVYVDAEEEETIMIAMSPDDVKASKSTMSESEQQELQL 526

Query: 659  ------------------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQ 700
                              T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQ
Sbjct: 527  QEQELDPAKRIKPTTSSNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 586

Query: 701  AMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIE 760
            AMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ E
Sbjct: 587  AMGVFLTNYSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAVVAIACYSGYNQE 646

Query: 761  DAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLL 820
            D+++MN+SS+DRG  R +  + Y  + ++      +   +P R+    + +++ H +   
Sbjct: 647  DSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRS----DTLRLKHGT--- 699

Query: 821  LLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGET 880
               LD+DGL APG  +   D+ I K +P+      +   GQ    +     +      E+
Sbjct: 700  YEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADTEEL---GQRTLHHSKRDASTPLRSTES 756

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
             +VD+V L ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PFS  GI
Sbjct: 757  GIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGI 816

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLV 999
             PDLI+NPH  PSRMTV  +IE L  K     G F      G+ S   D T E+I++ L 
Sbjct: 817  VPDLIINPHAIPSRMTVAHLIECLLSKVSSLSG-FE-----GDASPFTDVTAEAIAKLLR 870

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
            +HG+   G +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP E
Sbjct: 871  EHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVE 930

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAG 1118
            GR+R+GGLR GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K    
Sbjct: 931  GRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQF 990

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSM 1148
             C +CKN  NI  + +PYA KLL QE  SM
Sbjct: 991  ECRSCKNKTNIYQIHIPYAAKLLFQEFMSM 1020


>gi|170291136|ref|YP_001737952.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
            cryptofilum OPF8]
 gi|170175216|gb|ACB08269.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
            cryptofilum OPF8]
          Length = 1121

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 378/1152 (32%), Positives = 619/1152 (53%), Gaps = 56/1152 (4%)

Query: 26   KSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDV 85
            +S VD + ++  + + R L    ++SFN F+  GI+++V A   I   +  +  L    V
Sbjct: 5    RSEVDFYPIVKAYFRERNLADVQIESFNRFLERGIQEVVDAFKEI--ELVENYKLILSRV 62

Query: 86   RIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRI 144
             +G+P +   DG S    P+  RL +  Y API + I+   G    KT      V IG +
Sbjct: 63   YVGRPEIDEYDGSSLPAMPNEIRLRNADYIAPIELEIKVYAGGMELKT----ERVRIGHL 118

Query: 145  PIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDT--- 201
            PIM++S  C LYG DE  L   GE P DPGGYFII G+E+VL++++ ++ N+VI++    
Sbjct: 119  PIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERVLVMRDDIAPNKVIVEQTVA 178

Query: 202  -DKKGNINASVTSSTETVKSKTVIQ--MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258
             +K  +  A + S+   ++++  ++  M  G +       ++ IP+ +++KA+G+E D++
Sbjct: 179  ENKPYSHVAQIVSARAGLRTRLYLEYYMRDGTIKASTGA-LRGIPVAMLLKALGLERDED 237

Query: 259  VVQMVGR-DPRYSALLLPSIE------ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDR 311
            +V  +   D    +  L S++      E     I T+E+AL+Y+    +R     P  DR
Sbjct: 238  IVDAISSVDDEIRSEFLYSLDDVQRRAEEEGAQIITREEALDYIG---RRLVQAVPRADR 294

Query: 312  EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
               A   LR+ FL ++ V   +   K +++A M+ ++++ +  K   DDKD+  NKRL L
Sbjct: 295  IRYAKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLLKVVRGKLEPDDKDHFSNKRLRL 354

Query: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS-QFIVRDS--ITVGLERTLS 428
            SG L+  +F D F  ++ ++++  D  LS    S  +DL  + I++    +T  + R ++
Sbjct: 355  SGTLMQEVFRDSFYQLVRKLKEKADEQLS----SGVYDLDIRRIIQSQKLVTQRIIRAVA 410

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TG +          G++Q L R ++I TL H+ RV+        +   R    +  G LC
Sbjct: 411  TGAWPGGDL-----GVSQNLERTNYIATLHHLRRVNSPLPAGLPLHEVRQTHGTSIGRLC 465

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG   GLV++LA+   VT   +  P+I L    G +  +     E+ +     V 
Sbjct: 466  PLETPEGTNVGLVRSLAIFCDVTFGTDPEPIIELVLDWGAKPAKEAKPREVGSLTPVYV- 524

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG ++    +P+     +R+ R   ++   V+   N ++  V+I +D GR+ RPL+   
Sbjct: 525  -NGRLVAFTDKPEELVSFLREKR--AELNPEVNFIYNREEGAVFINADAGRMRRPLI--- 578

Query: 609  KGISRIKE--HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
              +S++KE    + ++  G  SF D ++ G++E LD +EE  A++A    + T   TH +
Sbjct: 579  -PVSKLKEAMELLPKVDSGELSFTDLVKMGVVELLDADEEEYAVVAQSIEEITDKHTHFD 637

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
              P+ + GV A  IPY  HN  PR+     M +Q +G    N   R DS  +L+ YPQRP
Sbjct: 638  FAPYAMFGVAASQIPYAEHNNIPRDIIGSNMVRQGLGEYLANWRLRFDSRAFLMFYPQRP 697

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ TR  E+ GY+   +GQN  VA++   GY+++DA+VM+K ++DRG  R +  + Y   
Sbjct: 698  IVETRGAEITGYNYRPSGQNLVVALLPMDGYNMDDALVMSKGAIDRGAARAVFFRTYETE 757

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +++A    D+   P      + + +  ++  L      +DG+  P   ++  DV I K 
Sbjct: 758  ARRHAIIEGDKFENPVALKKVSGKKEEQYYQKL-----GEDGIVDPETYVEGGDVLIGKT 812

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            SP      +   +G     +     +      E  VV  V L +   G+  ++  +R TR
Sbjct: 813  SPPRFSPELTVGSGYPQYTFERRDTSISMRAWERGVVTDVLLATKTGGEKLVRVNVRETR 872

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             PELGDKF++RHGQKGV G I + ED PF+ +GI PD++++PH  PSRMT+G++ E++ G
Sbjct: 873  PPELGDKFATRHGQKGVLGMIYRHEDMPFTAQGIIPDIVLDPHTIPSRMTIGQLYEIIAG 932

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K G   GRF  G+ F      ++ VE + E LVK GF Y+G++++Y G TG  ++A +F+
Sbjct: 933  KVGALEGRFVDGTPF-----MSEPVEDLMEALVKLGFEYSGEEIMYDGRTGRMIKAPVFI 987

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            G  YYQ+LKHMV DK+HAR  G   +LTRQP EGRAR GGLR+GEME + LI++GA+ +I
Sbjct: 988  GISYYQRLKHMVRDKIHARARGQMQLLTRQPVEGRARGGGLRLGEMEGEVLISHGAASVI 1047

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             +R +  SD   + VC+ CG + ++N K     C  C++   +  +   YA KL I+EL 
Sbjct: 1048 RDRYIDQSDKTIIYVCKECGTIAFFNQKTNEFFCPRCQSSVEVKPLITSYASKLFIEELM 1107

Query: 1147 SMNIVPRLKLAE 1158
            S ++  RL + E
Sbjct: 1108 SGHVDVRLSVEE 1119


>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryptococcus neoformans]
          Length = 1114

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 374/1105 (33%), Positives = 587/1105 (53%), Gaps = 132/1105 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI----------VSGIDPSIF 79
            D + +   F + +GLV+Q L+SFN F+ T +++IV  + R+          V+G +   +
Sbjct: 44   DYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYTGVAGDETRRY 103

Query: 80   -LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------- 123
             + F  + + + + T +DG +  L P   RL ++TY+AP+ V+I+               
Sbjct: 104  EISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEA 163

Query: 124  -----------VQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLD 172
                       V+G+  EKT+       IG++P+M+RS  C+L+G  + +   +GECP D
Sbjct: 164  DWQPAVGDDGEVEGAEEEKTS-------IGKVPVMVRSNFCLLHGLPDDQCHEIGECPYD 216

Query: 173  PGGYFIIKGTEKVLLIQEQLSKNRVII---DTDKKGNINASVTSSTET---VKSKTVIQM 226
             GGYFII G+EKVL+ QE+++ N V +       +    A + S  E    V + T ++M
Sbjct: 217  QGGYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRM 276

Query: 227  EK-------GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
                     G + + L      IP++VV +A+G+  D++V+  +     D     +L PS
Sbjct: 277  YARASGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPS 336

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            IEE  +  +  ++ AL+++  + +     +P   R+  AF IL   FL +V         
Sbjct: 337  IEE--SFAVQDRDTALDFIGRRGQHEK--APRAQRQRAAFDILHKEFLPHVSTAEGFESK 392

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
            K +++  M+ R+  A L +  +DD+D+ GNKRL+L+G L++ +F  +F  +  ++ + + 
Sbjct: 393  KAYFLGYMVHRLCMAALGRRELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLK 452

Query: 397  IILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGT 456
              + +   +  F L+  I  ++IT GL+  L+TGN+  KR    R G++QVL   +F  T
Sbjct: 453  KCVEQ---NKEFALNMAIRPNTITDGLKYALATGNWG-KRDNT-RAGVSQVLNSYTFTST 507

Query: 457  LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
            L H+ R +    +  K + PR L  + WGM+CP +TPEG ACGLVKNLALM++++     
Sbjct: 508  LSHLRRTNTPIGRDSKAAKPRQLHDTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYS 567

Query: 517  GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
             P++      G+EDL     E    P +  V  NG+ +G HR      + + ++RR G++
Sbjct: 568  APVMEFLEEWGLEDL----SEYQDAPTATKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQL 623

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK----------GISRIKEHHMKELLDGV 626
               VS+  + ++R + + +D GRVCRPL I D+           I RI +   + LL G 
Sbjct: 624  KYEVSIVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSG- 682

Query: 627  RSFDDFLREGLIEYLDVNEENNALIALYEGD----------------------------- 657
             ++D  L EG++EY+D  EE   LIA+   D                             
Sbjct: 683  -AWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAA 741

Query: 658  ------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                   +   TH+EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   
Sbjct: 742  RIKSTVWSQQYTHMEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQL 801

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+++ +L YPQ+PL TTR++E + + +L AGQNA VA+M YSGY+ ED+++MN+SS+D
Sbjct: 802  RMDTMVNVLYYPQKPLATTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSID 861

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R +  + YT   +      ++ I +PDR     E +++ H +      LD DGL A
Sbjct: 862  RGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRN----ETLRMKHGTGDRYAKLDVDGLVA 917

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +  +D+ I K +PL      +    Q  ++ R      K    E  VVD+V L ++
Sbjct: 918  PGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTK-RDISTPLKST--EQGVVDQVMLSTN 974

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
              G++ +K  +R TR P++GDKF+SRHGQKG  G   +QED PF+  G+ PD+I+NPH  
Sbjct: 975  GEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAI 1034

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G ++E L  K     G     + F E      TVE++S+ L   G+   G +++
Sbjct: 1035 PSRMTIGHLVECLLSKVSTLTGAEGDATPFTEL-----TVEAVSKVLRAKGYQSRGFELL 1089

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKH 1036
            Y G TG  LQA ++ GP YYQ+LKH
Sbjct: 1090 YHGHTGRKLQAQVYFGPTYYQRLKH 1114


>gi|26333219|dbj|BAC30327.1| unnamed protein product [Mus musculus]
          Length = 551

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/543 (55%), Positives = 397/543 (73%), Gaps = 9/543 (1%)

Query: 19  QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
           ++L AP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N  I+KI++AN+++ S  DP  
Sbjct: 14  EQLTAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73

Query: 79  FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
           +L++ ++ +G P +     V+  ++PH CRL DMTY+API V+IEY +GS      + +N
Sbjct: 74  YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129

Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
            + IGR+PIMLRS  CVL GK  AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189

Query: 198 IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
           I++ D+KG + ASVTSST   KS+T + +++G+ YL  N   + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249

Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
           E+VQM+G +    A   PS+EEC    I+TQ +AL+Y+  KV+R     G P   +   A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309

Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
             +L    L +VPV   NFR KC Y AVM+RR++ A    + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368

Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
           +SLLFEDLFK   SE++K  D ++ K  R+++FD+ + + +D IT G+   +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427

Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
           RFKM R+G+TQVL+RLS+I  LG MTR+S QFEK+RK SGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKESGPRSLQPSQWGMLCPSDTPEG 487

Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
           EACGLVKNLALMTH+TTD E+GP+I L   LGVED+ LL GEEL  PN FLV  NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547

Query: 556 KHR 558
             R
Sbjct: 548 VIR 550


>gi|13492590|gb|AAK28286.1| DNA-directed RNA polymerase III [Leishmania major]
          Length = 606

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 319/644 (49%), Positives = 412/644 (63%), Gaps = 52/644 (8%)

Query: 523  CYCLGVEDLELLSGEELHNPNSFL----VIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
             + LGVE+++ ++      P  FL    V  NG ++G HR P      +R LRR+G++  
Sbjct: 1    AHALGVEEIDTVT------PTDFLHYCTVFLNGTLIGIHRYPNRLCAGIRTLRRSGRLHP 54

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLI 638
             VS+    +QR V I SDGGR+ R L+I   G   +   H+  L D + + +DFL EGL 
Sbjct: 55   HVSISTQPRQRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLDRLRDRLCTHNDFLAEGLT 114

Query: 639  EYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
            EY+DVNE N+ LIA+Y  D  P TTH+E+EP ++LGV+AG+IPYPHHNQS RNT+Q AMG
Sbjct: 115  EYVDVNESNDCLIAVYPADIGPYTTHLEVEPLSLLGVVAGIIPYPHHNQSARNTFQSAMG 174

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQA+G +A NQ  R D++L L  YPQRPL  T+ + L  Y+KLGAG NA V VMSYSGYD
Sbjct: 175  KQALGTVALNQYIRADTVLLLGAYPQRPLCRTKAMSLTHYEKLGAGINAMVCVMSYSGYD 234

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSN 818
            IEDA V NKSSLDRG+GRC+V++K+    +KYA    D IL P++   G  + +      
Sbjct: 235  IEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEKNS-GTGKFKA----- 288

Query: 819  LLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDG 878
                 L+ DG+A  G +++  DV +NK +P+                 R A   YK P  
Sbjct: 289  -----LNPDGVAGKGALVQQYDVLVNKFTPV------------AGGDPRPAPLVYKYP-- 329

Query: 879  ETCVVDRVALCSDKNGDLC------IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
            +  VVD V +    + D        IK + R  R PE GDKFSSRHGQKGV G IV   D
Sbjct: 330  QPAVVDHVIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVD 389

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             PF+ERG+CPD+IMNPHGFPSRMTVGK++EL+  KA    G    G+AFG      ++ +
Sbjct: 390  MPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFG-----GESAD 444

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            SIS+ L+  G++Y+GKD+ YSGITG  +Q Y+F GPIYYQ+LKHMV DKMHAR +GPR M
Sbjct: 445  SISQQLLSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSM 504

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYN 1112
            LTRQPTEGR+R+GGLRVGEMERDC++ YGAS L+ ERL++SSD F   +C VCG LGY N
Sbjct: 505  LTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLISSDMFTADICHVCGNLGYNN 564

Query: 1113 HKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
                   C+ CK     S + +PYA KLLIQELQ M +  RL +
Sbjct: 565  R------CTYCKTKGTTSKVNMPYAFKLLIQELQGMGVSLRLTM 602


>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora crassa
            OR74A]
 gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora crassa
            OR74A]
          Length = 1005

 Score =  604 bits (1557), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 365/1018 (35%), Positives = 553/1018 (54%), Gaps = 102/1018 (10%)

Query: 166  LGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTE------ 216
            L ECP D GGYFII G+EKVL+ QE+ + N V +     G   +  A + S+ E      
Sbjct: 4    LNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLI 63

Query: 217  ---TVKSKTVIQMEKGKMY----LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRY 269
                ++  T     KG++     + L    +++ + +V +A+G+ SD++++  +  D R 
Sbjct: 64   SSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRD 123

Query: 270  SALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLAN 326
            S +L    P IEE     I  +E AL+Y+ GK    + G   N R   A  +L+   L +
Sbjct: 124  SQMLEALRPCIEEA--FCIQDREVALDYI-GKRGNGSTGINRNGRIKAAKEMLQKELLPH 180

Query: 327  VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKT 386
            +         K F++  M+ ++++ +L +   DD+D+ G KRL+L+G L++ LF  + + 
Sbjct: 181  ISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRR 240

Query: 387  MISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHR 441
            +  ++    ++ VD        +  F L+  I   ++T GL+ +L+TGN+ D K+     
Sbjct: 241  LTQDLMGYMKRCVDT-------NKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSST 293

Query: 442  KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
             G++QVL R +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLV
Sbjct: 294  AGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLV 353

Query: 502  KNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPK 561
            KNL+LM  V+      P+I       +E LE    E L  PN+  V  NG  +G H+ PK
Sbjct: 354  KNLSLMCFVSVGTLADPIIEFMIARNMEVLE--EYEPLRYPNATKVFVNGTWVGVHQDPK 411

Query: 562  CFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD----------KGI 611
                +++ LRR   I   VS+  + + R   I SD GRV RPL + +          KG 
Sbjct: 412  HLVTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQ 471

Query: 612  SRIKEHHMKEL---------LDGVRSFDDFLREGLIEYLDVNEENNALIAL--------- 653
              + + H++ L          +    +   L  G IEYLD  EE  A+I +         
Sbjct: 472  LILTKEHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYR 531

Query: 654  --------YEGDAT------------PDT---THIEIEPFTILGVIAGLIPYPHHNQSPR 690
                    +E DA             P T   TH EI P  +LG+ A +IP+P HNQSPR
Sbjct: 532  QHKFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPR 591

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA
Sbjct: 592  NTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVA 651

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            +  YSGY+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +PDR+      
Sbjct: 652  IACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRS------ 705

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
               +   +     L++DG+ APG  +  +D+ I K SP+      +   GQ  +++    
Sbjct: 706  -NTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDNQEL---GQRTAQHVKRD 761

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             +      E+ +VD VA  ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   +Q
Sbjct: 762  ASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQ 821

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF+  GI PD+I+NPH  PSRMT+  +IE L  K G   G     + F +      T
Sbjct: 822  EDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVGALKGMEGDATPFTDV-----T 876

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V+S+S  L +HG+   G +++Y G TG  L+A +F GP YYQ+L+HMV DK+HAR  GP 
Sbjct: 877  VDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPV 936

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL 1108
             ++TRQP EGRAR+GGLR GEMERDC+IA+GA+  + ERL   SD F V +C +CGL+
Sbjct: 937  QIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEICGLM 994


>gi|291336400|gb|ADD95957.1| DNA directed RNA polymerase beta subunit putative [uncultured
            organism MedDCM-OCT-S04-C1]
          Length = 1203

 Score =  604 bits (1557), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 397/1237 (32%), Positives = 633/1237 (51%), Gaps = 149/1237 (12%)

Query: 33   QLLPEFLKVRGLVKQHLDSFNYFVNTG------IRKIVRA----NDRIVSG--------- 73
            +++  F K R LV   L S++  + TG      + KIVR+     D  V           
Sbjct: 3    EIIESFFKQRSLVNHQLASYDDCIPTGDNSVSRMEKIVRSIRVGTDEEVEDENGGLVKLD 62

Query: 74   -IDPSIFLRFKDVRIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIE-YVQGSHTE 130
             ID  I +R K++++G+P++   DG     +P  CRL  +TY +P+ ++   Y  G   +
Sbjct: 63   VIDQDIIIRVKNIQLGEPTIREADGSDHPSSPMECRLRKLTYMSPVRMDFTIYRNGVPGQ 122

Query: 131  KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEA------------------ELARL-GECPL 171
                 +  V +G +PIM+RS RC L+    A                  EL R+ GE PL
Sbjct: 123  P----EKGVQVGNMPIMVRSRRCNLHANHIAGDRVLHPTTSDEDQKMWDELLRVKGEDPL 178

Query: 172  DPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQMEK 228
            DPGGYFII GTE+VL+  E L+ NRV ++ +K   K    A + S  + ++    ++  +
Sbjct: 179  DPGGYFIINGTERVLISMEDLAPNRVTVEINKRYAKKTEVAKIFSQKDGMRKPLTVEKRR 238

Query: 229  GKMYL--LLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY 286
              M +  +       IP++++M+A+G+E+DQE+ Q +         ++ +I E  + + Y
Sbjct: 239  DGMLMVKISTAGTTAIPVVLLMRALGIENDQELFQAIAGPTETFKFIVANINEVKDNEEY 298

Query: 287  TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
            T +   E  +   K+   G     RE R   +L    L ++     + + K  ++  ++R
Sbjct: 299  TVDSLDEAHQWLEKKFAAGQQKEYREARVTQLLDRELLPHLGDQTEDRKKKAIFLGRIVR 358

Query: 347  RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP-SRS 405
            +++E  +     +DKD+  NKR+ L+G LV    EDLF+  + ++ + +   L +  +R 
Sbjct: 359  QVLEMAITSRKPNDKDHYANKRVRLAGDLV----EDLFRVSMGQLARDLKYQLERHHNRK 414

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
                ++  +  D +T  +   L+TGN+        R G++Q+L R +++  L HM RV+ 
Sbjct: 415  RELKITSCLRPDVLTSKIMHALATGNW-----VGGRSGVSQLLDRTTYLSALSHMRRVTS 469

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
               +S+     R L P+QWG LCP +TPEG+ CGLVKN A M  ++    E  + S    
Sbjct: 470  PLVRSQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAAQMIDISEAVPETEIRSR--- 526

Query: 526  LGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVN 585
              ++++++   ++  N +   V  NG I G H+R K      +  RR G I   VS+  +
Sbjct: 527  --LDEMDVFQPDDWTNGDRIHV--NGDIYGIHKRGKNLVTQFKNARRRGAIRPEVSIRYD 582

Query: 586  EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIE------ 639
             +   ++I +D GR+ RP++I   G  R+ + H++ +  G  +F D + EG++E      
Sbjct: 583  SQNNDIFINTDKGRILRPVLILYDGAPRLTQKHLEMVSSGEMTFTDLVNEGVVEWIDAEE 642

Query: 640  ----------------------------------YLDVNEEN------NALIALYEGDA- 658
                                              +L++ E         A I +  GD  
Sbjct: 643  EEDLYISPRPFTLPEAVPEGNKFAGRPVSHSTITWLNLGEPGATTAKLQADITMPNGDKE 702

Query: 659  ----------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                      T + TH EI+P  +LGV A LIPYP HN +PR T   AM KQ++G  + N
Sbjct: 703  VAIFDVDLLYTSEHTHCEIDPQLVLGVCASLIPYPEHNSTPRVTGGTAMVKQSLGLPSAN 762

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               R D+ L++L YPQR +  T+ ++   +D    GQN  VAVMS  GY+++DA+++N+S
Sbjct: 763  YRLRPDTRLHILHYPQRSITYTQAMDTTKFDSRPGGQNFIVAVMSLHGYNMQDAVIINRS 822

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ----VVHHSNLLLLIL 824
             + R  GR    + Y A  +++     D I  P   G G E ++    V  + +L     
Sbjct: 823  CVQRALGRSTFNRTYNAERRRFPGGQVDEIEIP---GTGLEEVKGLKPVGSYDHL----- 874

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCV 882
            + DGL  P + ++  DV + K SP       +  TG         R+    P   GE   
Sbjct: 875  EGDGLPHPEKYLEGGDVLVGKTSP----PRFLEETGAGAFLQAQERRESSMPIRHGEKGW 930

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD V +    +    ++ ++R  + PE+GDKF+SRHGQKGV G +V +ED PF+  GI P
Sbjct: 931  VDNVYVTESLDSGRLVRCMVRSHKVPEVGDKFASRHGQKGVIGRLVNEEDMPFTRDGIVP 990

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLVKH 1001
            DLI+NPH  PSRMTV  ++E++GGK G   GR   G+AF GE  G      S+ ++LV++
Sbjct: 991  DLIINPHAIPSRMTVAHVLEMIGGKVGSLEGRRIDGTAFRGEKEG------SLRDSLVRN 1044

Query: 1002 GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGR 1061
            G+ + G++++ +G TG    A IF+G IYYQKL HMV  K+HAR  G   +LTRQPTEGR
Sbjct: 1045 GYDHTGREVMMNGETGETYPAEIFVGCIYYQKLHHMVSGKIHARSRGRVQILTRQPTEGR 1104

Query: 1062 ARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS 1121
            AR GGLR GEMERDCLIA+GASM+I +RL+  SD  ++ VC   G + +++ K +  +  
Sbjct: 1105 ARQGGLRFGEMERDCLIAHGASMVIKDRLLDESDGIDLFVCAQSGHVAWFDPKRRTYVSP 1164

Query: 1122 TCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
               +G  +  ++  YA KLL+ E++S+ +  RL+L +
Sbjct: 1165 IHGDGAEVYKVQTSYAFKLLLDEMKSLGVAMRLELED 1201


>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
 gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
          Length = 1634

 Score =  603 bits (1555), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 397/1144 (34%), Positives = 592/1144 (51%), Gaps = 149/1144 (13%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV--------SGIDPS---- 77
            D + ++  F   +GLV+Q LDSFN FVN  I++I+     IV         G++ +    
Sbjct: 24   DSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAAEEKE 83

Query: 78   IFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---EY--VQGSHTEK 131
              ++F  V + +P +T  DG S  L P   RL ++TY AP+ V++   EY  V  +  E+
Sbjct: 84   YIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTRVGENEVEE 143

Query: 132  TTMEKNDVVIGRIPIMLRSCRCVLY-GKDEAELARLGE---------------------- 168
             T   + V +G++PIML+S RC L+    E E   LGE                      
Sbjct: 144  KTETFSHVHLGKVPIMLKSERCNLHEASTEQEATNLGESYFGAAACLIVGTCPGIAHQLA 203

Query: 169  ---CPLDP---------------GGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK------ 204
                PL P               GGYF+I G+EKVL+ QE+++ N V +    +      
Sbjct: 204  PPLTPLTPALAAPTRSASSAHPQGGYFVINGSEKVLIAQERMANNHVYVFKKSQPSKYTF 263

Query: 205  -GNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIP-------IMVVMKAMGMESD 256
               I + V  ST +  S +++ + KGK          +IP       I ++ +A+G  SD
Sbjct: 264  CAEIRSVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQIPYIRAEFPIFILFRALGFVSD 323

Query: 257  QEVVQMV----GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE 312
            +++++ +      DP     L  S+EE    ++ TQE+AL YL GK + +  G+     E
Sbjct: 324  RDILEHIVYDLDADPAMLEALRSSVEEAQ--EVQTQEEALNYL-GK-RGTVTGASKEFME 379

Query: 313  GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELS 372
             R                      K ++V  M+ R++   L +   DD+D+  NKRL+L 
Sbjct: 380  TR----------------------KGYFVGYMVHRLMLVALGRRPEDDRDHYANKRLDLG 417

Query: 373  GQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
            G L++ LF  LF+ +  E+    Q+ VD            ++   I    IT GL+ +L+
Sbjct: 418  GPLMAGLFRLLFRKLCKELRMQAQRMVDA-------GKEINVISAINDKVITRGLKYSLA 470

Query: 429  TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            TGN+  +  +  R G++QVLARL++  TL H+ RV+    +  K++ PR L  S WG+ C
Sbjct: 471  TGNWGEQGKQGIRAGVSQVLARLTYASTLSHLRRVNSPIGREGKLAKPRQLHNSLWGIFC 530

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG+A GLVKN+ALM ++T      P+++       E L+ ++  ++    S  V 
Sbjct: 531  PAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTEALDEVTPADI--AASTKVF 588

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG+ LG  R P      +R +RR       V++  +   + + I +D GR  RPL I +
Sbjct: 589  INGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYDGPLKELRIFTDYGRASRPLYICE 648

Query: 609  KGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALIALY--------- 654
                 + +HH++ L+  +   D++     +++GL+EY+D  EE   +IA+          
Sbjct: 649  DNRLLVSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNARE 708

Query: 655  EGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
             G AT  T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG  A N   RM
Sbjct: 709  AGAATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRM 768

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D+  ++L YPQ+PL+ TR ++ + + +L AG NA VA+M YSGY+ ED++++N SS+DRG
Sbjct: 769  DTQGFVLYYPQKPLVCTRAMDYLKFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRG 828

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
            F R I  + Y    +K  +   + I  PD +     +M+   +       LD DGL  PG
Sbjct: 829  FHRSIFYRAYKEEEKKAGSMAREEIEAPDPS--VTSKMKHGTYDK-----LDADGLCPPG 881

Query: 834  EIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
              +   D+   K   L        PTG    R+     +      E  V+D+V L ++  
Sbjct: 882  TRVSGEDIICGKTVTLPD-----DPTGAV-QRFTKKDASLALRGHEAGVIDQVMLTTNDE 935

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
            G   +K  +R    P++GDKF+SRHGQKG CG     ED PF+  GI PD+I+NPH  PS
Sbjct: 936  GQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAEGIVPDIIVNPHAIPS 995

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMT+G ++E L  K     G     + F +      TV+++S+ L   G+   G +++YS
Sbjct: 996  RMTIGHLVEALMSKVASLMGSEGDATPFTKV-----TVDNVSQMLHDLGYQRRGWEVMYS 1050

Query: 1014 GITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            G TG  L+A IF+ P YYQ+LKHMV  K+H+RG GP  +LTRQP EGRAR+GGLR GEME
Sbjct: 1051 GHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEME 1110

Query: 1074 RDCL 1077
            RDCL
Sbjct: 1111 RDCL 1114



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query: 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKL 1134
            +C+I++GA+  + ERL   SD + + VC   GL+   N K +    +  K+G NI  + +
Sbjct: 1543 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQVYI 1602

Query: 1135 PYACKLLIQELQSMNIVPRLKL 1156
            PYACKLL QEL +M I PR++ 
Sbjct: 1603 PYACKLLFQELMAMCIAPRMQF 1624


>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
 gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
          Length = 1028

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 361/973 (37%), Positives = 534/973 (54%), Gaps = 87/973 (8%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI++V +A+G+ SD++++  +  D   +    +L P IEE     I  +E AL+++   
Sbjct: 73   IPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEE--GFVIQDREVALDFI--- 127

Query: 299  VKRSTFGSPPN-DREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
             KR +  S  N +R  R A  I++   L ++     +   K F++  M+ R+++  L + 
Sbjct: 128  AKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRR 187

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
             +DD+D+ G KRL+L+G L++ LF  LF  +  ++Q+ V   +          L+  +  
Sbjct: 188  DVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVES---DREIYLNVGLKA 244

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
             ++T GL   L+TGN+ + K+    + G++QVL+R ++  TL H+ R +    +  K++ 
Sbjct: 245  STVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAK 304

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  + WG++CP +TPEG+ACGLVKNLALM ++T      P+I       +E LE   
Sbjct: 305  PRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEF- 363

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
             E    PN+  V  NG+ +G HR+P    + M+ LRR   I   VS+  + ++R   I +
Sbjct: 364  -EPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREFKIFT 422

Query: 596  DGGRVCRPLVIADK-------GISRIKEHHMKELLDGVR---------------SFDDFL 633
            D GRVCRPL + D        G   + + H+++L +                   +D  +
Sbjct: 423  DAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDRRERYFGWDGLV 482

Query: 634  REGLIEYLDVNEENNALIA-----------LYEGDATPD------------------TTH 664
            + G++EY+D  EE   +I            L  G A P+                   TH
Sbjct: 483  KSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEQDPNKRVRSILSQRAHTWTH 542

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ
Sbjct: 543  CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANILYYPQ 602

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y+
Sbjct: 603  KPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYS 662

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               +    +  +R  +P R+     R             LD+DG+  PG  +   D+ I 
Sbjct: 663  DSEKMVGLTVVERFEKPMRSDTIGMRKGTYDK-------LDEDGIVNPGVRVSGEDIIIG 715

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K +PL      +   GQ    +     +      E  +VD+V + +  +    +K  +R 
Sbjct: 716  KTAPLAPDAEEL---GQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRM 772

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ PDLI+NPH  PSRMT+  +IE  
Sbjct: 773  TKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQ 832

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
              K  VS  R   G A    +   D TV+SIS  L +HG+   G +++Y+G TG  L A 
Sbjct: 833  LSK--VSALRGFEGDA----TPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQ 886

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGLR GEMERDC+IA+GAS
Sbjct: 887  VFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGAS 946

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYACKLL 1141
              + ERL   SDPF V +C  CGL+     KLK G+  C  C N   IS + +PYA KLL
Sbjct: 947  AFLKERLFDVSDPFRVHICDDCGLMTPIA-KLKKGLFECRLCNNKHRISQVHIPYAAKLL 1005

Query: 1142 IQELQSMNIVPRL 1154
             QEL +MNI  R+
Sbjct: 1006 FQELAAMNISARM 1018


>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
 gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 335/867 (38%), Positives = 491/867 (56%), Gaps = 76/867 (8%)

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  ++   +   +    
Sbjct: 1    MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYNYMQRCVEN-- 58

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTR 462
                F+L+  +   +IT GL  +L+TGN+  ++  M  R G++QVL R ++  TL H+ R
Sbjct: 59   -DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRR 117

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+ ++      P++  
Sbjct: 118  TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTASEPILYF 177

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                G+E LE       ++P+   V  NG+ +G HR P    D MR+LRR G I   VS+
Sbjct: 178  LEEWGMEPLEDYVPS--NSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDISPEVSI 235

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDG---------- 625
              + ++R   I +D GRV RPL I D       KG   +++ H+ +L++           
Sbjct: 236  IRDIREREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDEYDEESQ 295

Query: 626  --VRSFDDFLREGLIEYLDVNEENNALIALYEGD-------------------------- 657
                ++   + +G++EY+D  EE   +IA+   D                          
Sbjct: 296  ANAYTWSSLVNDGVVEYVDAEEEETIMIAMTPDDLEASKSSLSETQQKSLQLEEQELDPA 355

Query: 658  ---------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                     +T   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 356  KRIKPTYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 415

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+S
Sbjct: 416  YSVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQS 475

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R +  + Y  + ++      +   +P R+    + +++ H +      LDDDG
Sbjct: 476  SIDRGLFRSLFFRSYMDLEKRQGMKALETFEKPSRS----DTLRLKHGT---YEKLDDDG 528

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            L APG  +   D+ I K +P+      +    Q  ++ R A    +    E+ +VD+V L
Sbjct: 529  LIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRST--ESGIVDQVLL 585

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             ++ +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PFS +GI PDLI+NP
Sbjct: 586  TTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINP 645

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMTV  +IE L  K     G     S F +      T E++S+ L +HG+   G 
Sbjct: 646  HAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDV-----TAEAVSKLLREHGYQSRGF 700

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++Y+G TG  L A +F GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGR+R+GGLR
Sbjct: 701  EVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLR 760

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYY-NHKLKAGICSTCKNGD 1127
             GEMERDC+IA+GA+  + ERLM +SD F V VC +CGL+    N K     C +CKN  
Sbjct: 761  FGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKT 820

Query: 1128 NISSMKLPYACKLLIQELQSMNIVPRL 1154
            NI  + +PYA KLL QEL +MNI PRL
Sbjct: 821  NIYQIHIPYAAKLLFQELMAMNISPRL 847


>gi|167042832|gb|ABZ07549.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
            microorganism HF4000_ANIW137J11]
          Length = 1231

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 419/1185 (35%), Positives = 619/1185 (52%), Gaps = 103/1185 (8%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFV-NTGIRK--IVRANDRIVSGIDPS----------- 77
            FQ          LV   L SFN F+ + G R   + R  + I  G D S           
Sbjct: 90   FQSKSAAGSSAALVNHQLGSFNDFLPHAGNRAAWMQRVVNNITVGSDESMRGSVRLELGD 149

Query: 78   --IFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM 134
              + ++  +VR+GQP +   +G      P M RL ++TYAAP+ +    +     E+  +
Sbjct: 150  LEVVVKLGEVRMGQPMVVEANGSQSMSTPMMARLRNLTYAAPVFLGFSVI----EEEMEI 205

Query: 135  EKNDVVIGRIPIMLRSCRCVLY-------GKDEAELARLG------------------EC 169
            E ++  IG +P+M++S  C L+        K E E ARLG                  E 
Sbjct: 206  ESSEEEIGMMPVMVKSALCNLHRESKYLRSKPEYE-ARLGPDESFSDEAYAAILQMEQED 264

Query: 170  PLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD---KKGNINASVTSSTETVKSKTVIQM 226
            P DPGGYFI+ GTE+VL+  E L+ NRV+++ +   ++    A V S  E  ++ T+++ 
Sbjct: 265  PEDPGGYFIVNGTERVLVCLEDLAPNRVMVEREARYQRQTEYAKVFSQREGFRALTMVEK 324

Query: 227  EK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA-NLD 284
            +K G +++ +      +P++V+M A+GMES  +++  +  D     L+L +IE    +  
Sbjct: 325  KKDGILHVSIPVASGGVPLVVLMMALGMESADDIMGAITSDEATRNLVLANIEGIHRDEQ 384

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            +YT E+ALEYLE   +R   G     R  R   I+ +  L ++         K  ++  M
Sbjct: 385  VYTTEEALEYLE---RRFAAGQSKEYRRKRINYIIDNTLLPHLSTSLEVRYKKALFLGRM 441

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
             R ++E        DDKD+  NKRL+L+G L+  LF    + ++++++  ++   SK   
Sbjct: 442  AREVLELATGTRQPDDKDHYANKRLKLAGNLMEELFRAGLQALLNDMKYQMERSYSKRKE 501

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
                 +   I RD +T  +   ++TGN+   R      G++Q+L R   + TL H+ RV 
Sbjct: 502  KR---VKHAIRRDVLTNKIMHAMATGNWIGGR-----AGVSQLLDRTCNMATLSHLRRVI 553

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +S+     R L  +Q+G LCP +TPEG+ CGLVKNLALM  V+ +   G ++    
Sbjct: 554  SPLTRSQPHFQARDLHSTQFGRLCPNETPEGQNCGLVKNLALMIDVSENLPAGEVLETLR 613

Query: 525  CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
             L ++ LE L            V FNG + G    P+   + +R LRR  ++   V+V  
Sbjct: 614  ELDMQPLEKL------QEGWGKVYFNGDLAGCTAEPRNLVEKLRGLRRQARLSHTVNVRH 667

Query: 585  NEKQRCVYIASDGGRVCRPLVIADKGIS-RIKEHHMKELLDGVRSFDDFLREGLIEYLDV 643
            +E    V + SD GR+ RPL++  +     ++  H+  L  G  +++D +  GL+EY+D 
Sbjct: 668  DESLNDVLVNSDPGRIRRPLLLVHRNNKLALRRKHLDRLEAGKLTWNDLIDLGLVEYIDA 727

Query: 644  NEENNALIALYEGD-----ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 698
             EE + LIAL E D      T   TH+E++P  ILGV    +P+P +N SPR T    M 
Sbjct: 728  EEEEDCLIALGETDLKRNRKTHAYTHMEVDPMVILGVATSNVPFPEYNSSPRCTMGAGMS 787

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            KQ++G    N   R D+  +LL Y Q+P++ T  ++        AGQN  VAVMSY GY+
Sbjct: 788  KQSLGMGQSNYRLRPDTRGHLLHYTQKPMVQTEAMKHNTLLTRPAGQNMVVAVMSYHGYN 847

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSN 818
            +EDA++ N+ S+DRG GR   ++ Y +  ++Y     DR + PD    GA        S 
Sbjct: 848  MEDALIFNRGSIDRGLGRSTFMRSYFSEERRYPGGQEDRFIIPDPEVRGAR-------SE 900

Query: 819  LLLLILDDDGLAAPGEIIKPNDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKG 875
                 L+DDGL  P   ++  +V I K SP   L      M+P      R R +  T + 
Sbjct: 901  EAYFNLEDDGLIYPEVELRGREVLIGKTSPPRFLSEPTDFMTP-----QRVRESSLTVR- 954

Query: 876  PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPF 935
              GE   VD V L   +NG    +  +R  R PELGDKF+SRHGQKGV G IV  E  PF
Sbjct: 955  -HGEKGTVDSVMLSESENGSRIARIRVRDQRIPELGDKFASRHGQKGVIGHIVPPEGMPF 1013

Query: 936  SERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESIS 995
            +  GI PDLI+NPH  PSRMT+  ++E++GGK G   G+F  GSAF       D  + + 
Sbjct: 1014 TASGIFPDLIINPHAIPSRMTIAHVLEMVGGKLGAMNGKFIDGSAFS-----GDKEDDLR 1068

Query: 996  ETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTR 1055
            + L   GF ++G++ +Y G TG  + A IF+G IYYQKL HMV  K+HAR  GP  +LTR
Sbjct: 1069 DELASLGFKHSGRESLYDGQTGRRIDADIFIGVIYYQKLHHMVSGKLHARSRGPMQLLTR 1128

Query: 1056 QPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKL 1115
            QPTEGRAR GGLR GEMERDCLI +GASM+I +RL+  SD     V    G L Y   K 
Sbjct: 1129 QPTEGRARMGGLRFGEMERDCLIGHGASMVIKDRLLDESDKTTQFVDSRSGHLAY---KD 1185

Query: 1116 KAGICSTCKNGDN--ISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            + G+  T   GDN  I  + + YA KLL++EL+S+ I  +L+L +
Sbjct: 1186 RRGVL-TSPMGDNTAIYPVDMSYAFKLLLEELKSLGIAAKLRLED 1229


>gi|397576311|gb|EJK50184.1| hypothetical protein THAOC_30880 [Thalassiosira oceanica]
          Length = 1299

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 388/1132 (34%), Positives = 598/1132 (52%), Gaps = 132/1132 (11%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN--------------------DR 69
            D + ++  + + +GLV+Q LDSF+ F+   ++++V  +                    D 
Sbjct: 54   DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHTVGYDEDGFDE 113

Query: 70   IVSGIDPSIF-LRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYV 124
             +S     +F ++F  V + +P+ +  DG    + PH  RL ++TYAAP+ V++   EY 
Sbjct: 114  AMSSSTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYR 173

Query: 125  QGSHTEK-----------TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDP 173
              S               +T E     +G +PIMLRS  CVL  KD+A+LA LGEC  D 
Sbjct: 174  VPSDANVADPAEEMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQ 233

Query: 174  GGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKT------VIQME 227
            GGYF++ G+EKV++ QE++S N V     K+ +  + V  +   V++ T       IQM 
Sbjct: 234  GGYFVVNGSEKVIVAQERMSNNHVYAFRKKQPSKFSWVIETRSQVENSTRPTSTLYIQMY 293

Query: 228  K--GKMYLLLNQ------FVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
            +  GK  +  NQ      +++  IP++++ +A+G  +D+++++ V     D     L  P
Sbjct: 294  QKGGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRP 353

Query: 276  SIEECANLDIYTQEKALEYL--EGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNN 333
            S+EE  +  I  QE AL+++   G  +  T     +DR   A  IL+   L +V    + 
Sbjct: 354  SLEE--SFVIQKQEVALDFIGRRGSARDVT----KDDRIRYAAGILQREVLPHVGTEEHC 407

Query: 334  FRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK 393
               K F++   + +++   L +   DD+D+ G KRL+L+G L+  LF  LF+ +  +V++
Sbjct: 408  ETKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRR 467

Query: 394  TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN------------FDVKRFKMHR 441
             +   L +      F++   I  + IT GL+ +L+TGN            F  K   + R
Sbjct: 468  HLQRCLDE---GKHFNIGAAIKSNHITDGLKYSLATGNCESYRKNDCIFVFSCKPNNLMR 524

Query: 442  K---------------GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGM 486
                            G++QVL RL++  +L H+ R +    ++ K + PR L  S WGM
Sbjct: 525  HLGRLEGGDKGATTKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGM 584

Query: 487  LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFL 546
            +CPC+TPEG+A GLVKN+ALM ++TT   + P++        E+L  +    +   ++  
Sbjct: 585  VCPCETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAESSTCK 644

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG  +G HR P+      R LRR   I   VS+  +  +  V I +D GR+CRPL I
Sbjct: 645  IFVNGNWVGVHRDPRHLVHTFRSLRRMIDIDAEVSIVRDITESEVRIYTDAGRICRPLFI 704

Query: 607  ADKGIS-RIKEHHMKELL----DGVR-SFDDFLREGLIEYLDVNEENNALIALYEGD--- 657
             ++     IK+HH+ ++     DG R ++ D L EGL+EY+D  EE   +IA+   D   
Sbjct: 705  VNEDQELAIKKHHISQIQGFSEDGKRLTWTDLLMEGLVEYVDTEEEETTMIAMEPKDLGE 764

Query: 658  -ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
              +   TH EI P  ILGV A +IP+P HNQSPRN YQ AMGKQAMG  A N   RMD++
Sbjct: 765  GYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGIYASNYQVRMDTM 824

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
             ++L YPQ+PL TTR +E + + +L +G N  VA+M Y+GY+ ED+++MN+S++DRG  R
Sbjct: 825  AHVLHYPQKPLCTTRAMEFLKFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFR 884

Query: 777  CIVVKKYTAINQKYANS-------TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
                + Y   +Q+ A S        S+   +P  T      M+   ++      LD+DGL
Sbjct: 885  SSYYRCYN--DQEKAASVGSVGALNSETFEKP--TMDNTRGMKYGDYNK-----LDEDGL 935

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
             APG  +  +DV I K +P E             SRY     +      E+ +VD V + 
Sbjct: 936  VAPGTRVSGDDVLIGKTTPTEA-------LANAPSRYTKRDCSTSMKATESGIVDNVLIS 988

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
            + K G    K  IR+ R P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH
Sbjct: 989  TTKEGYRFTKVRIRNVRVPQVGDKFASRHGQKGTVGMTYRQEDMPFTCEGIVPDIIVNPH 1048

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT-VESISETLVKHGFSYNGK 1008
              PSRMT+ ++IE + GK  V  G        G+ +   D  V+ ++  L   G+  +G 
Sbjct: 1049 AIPSRMTIAQLIECILGKVAVFQG------CEGDATPFTDVHVDDVASRLHAMGYQRHGN 1102

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            + +Y G TG PL A +F+GP +YQ+LKH+V DK+H+R  GP  MLTRQP EG
Sbjct: 1103 EHMYQGHTGRPLNARVFIGPTFYQRLKHLVDDKIHSRARGPVAMLTRQPLEG 1154


>gi|418204392|gb|AFX61750.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            torchioi]
          Length = 1137

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 394/1164 (33%), Positives = 604/1164 (51%), Gaps = 158/1164 (13%)

Query: 34   LLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF----L 80
            ++  F + +GLV Q LDSF+ F++T ++++V    ++            +DP +     L
Sbjct: 2    VISSFFETKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPEEDEVDPVVLRRYEL 61

Query: 81   RFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS---------- 127
            +F  V +G+PSMT  DG +  + P   RL ++TY++P+ ++I     +G           
Sbjct: 62   KFGTVMLGRPSMTEGDGATSIMLPQEARLRNLTYSSPLYLSITKRITEGRERLISERDDD 121

Query: 128  ------------------HTEKTTM-----EKNDVVIGRIPIMLRSCRCVLYGKDEAELA 164
                              H E  T+     E+ +V IG++PIML+S  C+L   +E  L 
Sbjct: 122  DQVEDDIDDSGKGRGTYLHWEPKTLADDDPEEENVFIGKMPIMLKSKYCILKDLNEQSLY 181

Query: 165  RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTET 217
               ECP D GGYFII G+EKVL+ QE+ + N V +        T     I ++V   +  
Sbjct: 182  NWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRI 241

Query: 218  VKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPR 268
            +   ++    KG          +   L      IPI+VV +A+G+ SD++++  +  D  
Sbjct: 242  LSQLSIKLFAKGDSSKGGFGSTIRSTLPYIRTDIPIVVVFRALGVVSDEDILNHICYDRN 301

Query: 269  YS---ALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGRAFSILRDVF 323
             +    +L P IEE     I  +E AL+++    KR T  +  N   R   A  I++  F
Sbjct: 302  DTPMLEMLKPCIEE--GFVIQDREVALDFIS---KRGTSPTTMNHEKRVRYAREIIQKEF 356

Query: 324  LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383
            L ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF  L
Sbjct: 357  LPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRTL 416

Query: 384  FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRK 442
            F  +  ++ K V   +     + +  L+  +   +++ GL+  L+TGN+ + K+    + 
Sbjct: 417  FMRLTKDLYKYVQRCVET---NRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKA 473

Query: 443  GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 502
            G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVK
Sbjct: 474  GVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 533

Query: 503  NLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC 562
            NLALM  +T      P+I       +E LE    E   +PN+  V  NG+ +G HR P  
Sbjct: 534  NLALMCSITVGTPSEPIIDFMIQRNMEVLE--EYEPQVSPNATKVFVNGVWVGVHRDPAH 591

Query: 563  FADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--------GISRI 614
                ++ LRR   I   VS+  + + R   I +D GRVCRPL + D          ++  
Sbjct: 592  LVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVDNDPKSENCGSLALT 651

Query: 615  KEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEENNALIAL------- 653
            KEH  K              E  +    +D  ++ G+IEY+D  EE   +I +       
Sbjct: 652  KEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVIEYVDAEEEETIMIVMTPEDLET 711

Query: 654  ------------YEGDATPDT-------------THIEIEPFTILGVIAGLIPYPHHNQS 688
                        Y+  A P+              TH EI P  ILG+ A +IP+P HNQS
Sbjct: 712  SKQIAAGMMPEEYDAHADPNRRVRSQLTQKAHTFTHCEIHPSMILGICASIIPFPDHNQS 771

Query: 689  PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
            PRNTYQ AMGKQAMG    N   RM+++  ++ YPQ+PL TTR++E + + +L AGQNA 
Sbjct: 772  PRNTYQSAMGKQAMGVFLTNFDQRMETMANIIYYPQKPLATTRSMEFLKFRELPAGQNAI 831

Query: 749  VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA 808
            VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  +R  +P R    +
Sbjct: 832  VAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPLR----S 887

Query: 809  ERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL--ETRGSIMSPTGQTDSRY 866
            + +++ H +      LD DG+  PG  +   D+ I K +PL  E+    M     T    
Sbjct: 888  DTLRMKHGT---YDKLDHDGIVCPGVRVSGEDIIIGKTAPLAPESEEQGMRTKSHTKLDV 944

Query: 867  RSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
             +  ++      E  +VD+V L S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G
Sbjct: 945  STPLRS-----TENGIVDQV-LLSTSNDDLKFVKVRMRATKVPQIGDKFASRHGQKGTIG 998

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  GI PDLI+NPH  PSRMT+  +IE    K  VS  R   G A    +
Sbjct: 999  ITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----T 1052

Query: 986  GHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
               D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HA
Sbjct: 1053 PFTDVTVDSVSGLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHA 1112

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLR 1068
            R  GP  +LTRQP EGRAR+GGLR
Sbjct: 1113 RARGPTQILTRQPVEGRARDGGLR 1136


>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
          Length = 1179

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 384/1124 (34%), Positives = 595/1124 (52%), Gaps = 117/1124 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV-RANDRIVSGIDPSI---------- 78
            D + ++  F   +GLV+Q LDSF+ FV   ++++V  + D I+   D             
Sbjct: 75   DCWTIITSFFDEKGLVRQQLDSFDEFVQNTMQELVDESADLILDQSDQHTGAENDATKRY 134

Query: 79   FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS---HTEKTTM 134
             +RF  + + +P++T  DG    + P       +     +L   E   G      E   +
Sbjct: 135  EIRFGQIYLSRPTITEADGSVVPVFPQEAPPLYVDMTKRVLHGFEDENGETQFRPEGNGL 194

Query: 135  EK--NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
            E+  + V IG++    R+    L  KD   L  L ECPLD GGYFII G+EKVL+ QE++
Sbjct: 195  EERADKVWIGKVG---RNIPLCLESKD---LYDLNECPLDQGGYFIINGSEKVLIAQERM 248

Query: 193  SKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLLLN------QFV 239
            + N V +    +         I ++V    +T+ +  V    + +   L N       ++
Sbjct: 249  AGNHVYVFAKAQPSPISFLSEIRSAVEKGGKTISTMQVKMFHRNQDKTLGNVIRASLPYI 308

Query: 240  KK-IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEK------AL 292
            K  IPI VV +A+G+ SD+++++ +  D R    +L  ++ C +     QE+      AL
Sbjct: 309  KNDIPIWVVFRALGVTSDRDILEHICYD-RDDTSMLEMLKPCIDEGFVIQERIVSGQNAL 367

Query: 293  EYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAM 352
            +++  +   +T G     R   A  IL+   L ++ +   +   K F+   M+ R++ A 
Sbjct: 368  DFIGSR--GTTTGLNKEKRLRYAQEILQKEMLPHISMAEGSETKKAFFFGYMIHRLLLAA 425

Query: 353  LNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQ 412
            L++  +DD+D+ G KRL+L+G L++ LF  LF+ +      T D + S    +  F L  
Sbjct: 426  LDRRELDDRDHFGKKRLDLAGPLLASLFRMLFRKL------TKDCVES----NREFQLRL 475

Query: 413  FIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
             +  ++IT GL+ +L+TGN+ D K+    + G++QVL R +F  TL H+ R +    +  
Sbjct: 476  AVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRCNTPLGREG 535

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++     GP+I      G+E L
Sbjct: 536  KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSGPVIEFLEEWGLESL 595

Query: 532  E--LLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
            E  + +G   ++ ++  V  NG+ LG HR        + +LRR   I   VS+  + +++
Sbjct: 596  EENVATG---NSASATKVFVNGVWLGIHRDAPNLVKTLHRLRRMDHINSEVSIVRDIREK 652

Query: 590  CVYIASDGGRVCRPLVIADKGIS-RIKEHHMKELLDGVRS------FDDFLREGLIEYLD 642
             + I +D GR+CRPL I D+     +K+ H++ L +GV        +   ++ G+IE LD
Sbjct: 653  ELRIYTDAGRICRPLFIVDEQQKLTLKKKHVEWLQNGVDEEGQEFKWKQLVKRGVIELLD 712

Query: 643  VNEENNALIALYEGD----------------ATPDT-----------------THIEIEP 669
             +EE   +I++   D                  PD                  TH EI P
Sbjct: 713  ADEEETVMISMTPEDLENSRRIEGGGYVSNVNDPDWDPSGTARVKSVPNIHTWTHCEIHP 772

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
              ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL T
Sbjct: 773  SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNYQIRMDTMANILYYPQKPLAT 832

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            TR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y  I +K
Sbjct: 833  TRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDIEKK 892

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
                  +   +P R      RM+   +       L+ DG  APG  +   D+ I K +PL
Sbjct: 893  AGVLNLEEFEKPTRD--TTLRMKHGTYDK-----LEADGFIAPGTGVTGEDIIIGKTAPL 945

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
            +     +    ++ ++ R      K    E  +VD+V + ++  G   +K  +R TR P+
Sbjct: 946  QADSEELGQRTRSHTK-RDVSTPLKST--ENGIVDQVLITTNHEGHKFVKVRVRSTRVPQ 1002

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
             GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  K  
Sbjct: 1003 TGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVA 1062

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
               G     + F E      TV+S+S+ L + G+   G +++Y G TG  LQA ++ GP 
Sbjct: 1063 TLLGNEGDATPFTEL-----TVDSVSQLLQQKGYQSRGLEVMYHGHTGKKLQAQVYFGPT 1117

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEME 1073
            YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEME
Sbjct: 1118 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEME 1161


>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
          Length = 931

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 350/962 (36%), Positives = 537/962 (55%), Gaps = 91/962 (9%)

Query: 174  GGYFIIKGTEKVLLIQEQLSKNRVII----------------DTDKKGNINAS------V 211
            GGYF+I G+EKVL+ QE+++ N V +                   +KG+ NAS      +
Sbjct: 2    GGYFVINGSEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQPEKGSKNASPLFIKMM 61

Query: 212  TSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPR 268
             +++E   S   I+         L     ++PI++V +A+G  +D++V++ +     D  
Sbjct: 62   RATSERGSSGQCIRAA-------LPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYE 114

Query: 269  YSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVP 328
               LL PSIEE  +  I  Q+ AL+Y+ GK + +T G+  + R   A  IL+   L +V 
Sbjct: 115  MLELLKPSIEE--SFVIQDQDVALDYI-GK-RGTTVGATKDKRIKYASEILQKELLPHVG 170

Query: 329  VHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI 388
                    K ++   M+ R++ A L +  +DD+D+ G KR++L+G L++ LF  LFK + 
Sbjct: 171  TAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMASLFRLLFKKLT 230

Query: 389  SEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQ 446
             +V K     L K   SSR F+L+  +  ++IT GL+ +L+TGN+ D K+    R G++Q
Sbjct: 231  KDVAK----YLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQSRAGVSQ 286

Query: 447  VLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
            VL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLAL
Sbjct: 287  VLNRYTYTSTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLAL 346

Query: 507  MTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADV 566
            M++++      PLI       +E+LE LS   + +     V  NG+ +G HR P    + 
Sbjct: 347  MSYISVGSSATPLIMFLEEWAMENLEELSATSIADATKVFV--NGVWIGIHRDPGELINS 404

Query: 567  MRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV 626
            ++++RR+  I   VS+  + +++ + + +D GR CRPL + +    ++   H+  + D  
Sbjct: 405  LKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLKLTRDHVLRIQDTE 464

Query: 627  RSF--DDFLREGLIEYLDVNEENNALIAL------------------------------Y 654
              +   + + +G++EY+D +EE  A+I +                               
Sbjct: 465  DDYGWQNMIADGIVEYVDADEEETAMICMTPEDLAESRMTAEYGAPLQETRDLFSRVKSQ 524

Query: 655  EGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD 714
             G  +   TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD
Sbjct: 525  TGSYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMD 584

Query: 715  SLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGF 774
            +L  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG 
Sbjct: 585  TLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGL 644

Query: 775  GRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGE 834
             R +  + Y    +K      +   +P R       +++ H +      L++DGL APG 
Sbjct: 645  FRSLFFRTYMDAEKKAGMMFMEEFEKPTRD----TTLRLKHGT---YEKLEEDGLIAPGT 697

Query: 835  IIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNG 894
             +  +D+ I K +P+      +   GQ  + +     +      ET +VD+V L ++++G
Sbjct: 698  RVSGDDIIIGKTAPIPADSEEL---GQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDG 754

Query: 895  DLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSR 954
               +K  +R TR P++GDKF+SRHGQKG  G   +QEDFPFS  GI PDLI+NPH  PSR
Sbjct: 755  LKFVKVRVRSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSR 814

Query: 955  MTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSG 1014
            MT+G MIE L GK     G     + F +      TVE+IS+ L   G+   G +++Y+G
Sbjct: 815  MTIGHMIECLLGKVSTLTGNEGDATPFTDV-----TVEAISQALQAQGYQSRGFEVMYNG 869

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074
             TG  L   +F+GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR GEMER
Sbjct: 870  FTGRKLNVQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMER 929

Query: 1075 DC 1076
            D 
Sbjct: 930  DW 931


>gi|449480796|ref|XP_004155998.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like,
           partial [Cucumis sativus]
          Length = 392

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/375 (77%), Positives = 326/375 (86%), Gaps = 2/375 (0%)

Query: 8   GSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAN 67
            +P D  + DKQ +  P+KS VDKFQLLPEFLKVRGLVKQHLDSFNYFVNT I+KIV+AN
Sbjct: 19  SNPIDSDI-DKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKAN 77

Query: 68  DRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS 127
           DRI S  DPSI+LRF DVRIG+PS+TV+ VSE +NPHMCRLSD+TYAAPILV+IEY++ S
Sbjct: 78  DRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEES 137

Query: 128 HTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
           H +K   EK DVVIGR+PIMLRS  CVL+GKDEAELARLGECPLDPGGYFIIKGTEKV+L
Sbjct: 138 HAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVL 197

Query: 188 IQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVK-KIPIMV 246
           IQEQLSKNR+IIDTDKKGNINASVTSSTE  KSKTVI+ME  K+YL LN F   KIPIMV
Sbjct: 198 IQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMV 257

Query: 247 VMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
           V+KAMGMES QEVVQMVGRDPRY ALLLPSIEECA   IYTQE+ALEYLE KVK+  F S
Sbjct: 258 VLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFAS 317

Query: 307 PPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGN 366
            P ++EGRA  ILRDVFLANVPV+ NNF PKC YVAVM+RRM++A+L+KDAMDDKDYVGN
Sbjct: 318 APPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGN 377

Query: 367 KRLELSGQLVSLLFE 381
           KRLELSGQL+SLLFE
Sbjct: 378 KRLELSGQLISLLFE 392


>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 363/971 (37%), Positives = 529/971 (54%), Gaps = 72/971 (7%)

Query: 106  CRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVLYGKDE 160
             RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C LY   E
Sbjct: 2    ARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 61

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------SVTSS 214
             +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      S+  S
Sbjct: 62   KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES 121

Query: 215  TETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEVVQMVG 264
                 S   ++M           G+       +++ +IPI++V +A+G  +D+++++ + 
Sbjct: 122  QNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 181

Query: 265  ---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
                D +   LL PS+EE     I  Q+ AL+Y+ GK +  T G     R   A  IL+ 
Sbjct: 182  YDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGQTVGVTKEKRIKYAKEILQK 237

Query: 322  VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
              L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+  LF 
Sbjct: 238  EMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFR 297

Query: 382  DLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437
             LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+     
Sbjct: 298  MLFRKLTRDVRGYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANA 350

Query: 438  KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
               R G++QVL RL+F  TL H+ R++    +  K++ PR L  S WGM+CP +TPEG+A
Sbjct: 351  AGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQA 410

Query: 498  CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
            CGLVKNLALM ++T      P++        E+ E +S   +  P +  +  NG  +G H
Sbjct: 411  CGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFVNGCWVGIH 468

Query: 558  RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
            R P+     +R+LRR   +   V V  + + + + + +D GR  RPL I +K    IK+ 
Sbjct: 469  RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 528

Query: 618  HMKELLDGV---RSFDDFLREGLIEYLDVNEENNALIALYEGDA-----TPDT------T 663
            H++ L         + D + +G IEY+D  EE   +I++   D       PD       T
Sbjct: 529  HIRSLQQRETQDEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEAYSETYT 588

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            H EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L YP
Sbjct: 589  HCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYP 648

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            Q+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R +  + Y
Sbjct: 649  QKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 708

Query: 784  TAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYI 843
                +K      +   RP+R       M + H S      LDDDGLA PG  +   DV I
Sbjct: 709  RDEEKKMGTLIKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTRVSGEDVII 761

Query: 844  NKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             K +P+    S     GQ  SRY     +      E+ +VD+V L ++ +G   +K  +R
Sbjct: 762  GKTTPIAQDES----QGQA-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 816

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRMT+G++IE 
Sbjct: 817  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 876

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            + GK  V  G+    + F +      TV++IS+ L K G+   G + +Y+G TG  L A 
Sbjct: 877  IMGKVAVHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGHTGRRLTAM 931

Query: 1024 IFMGPIYYQKL 1034
            IF+GP YYQ+L
Sbjct: 932  IFLGPTYYQRL 942


>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella nidulans]
          Length = 1009

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 368/1036 (35%), Positives = 551/1036 (53%), Gaps = 103/1036 (9%)

Query: 182  TEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQMEKG----- 229
            +EKVL+ QE+ + N V +        T     I ++V   +  +   ++    KG     
Sbjct: 1    SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKG 60

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECAN 282
                 +   L      IPI++V +A+G+ SD++++  +  D   +    +L P IEE   
Sbjct: 61   GFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEE--G 118

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRDVFLANVPVHNNNFRPKCFY 340
              I  +E AL+++    KR +  S  N +R  R A  I++   L ++     +   K F+
Sbjct: 119  FVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFF 175

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
            +  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF  LF  +  ++Q+ V   + 
Sbjct: 176  LGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVE 235

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
                     L+  +   ++T GL   L+TGN+ + K+    + G++QVL+R ++  TL H
Sbjct: 236  S---DREIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSH 292

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM ++T      P+
Sbjct: 293  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPI 352

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            I       +E LE    E    PN+  V  NG+ +G HR+P    + M+ LRR   I   
Sbjct: 353  IDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHE 410

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISRIKEHHMKELLDGVR----- 627
            VS+  + ++R   I +D GRVCRPL + D        G   + + H+++L +        
Sbjct: 411  VSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDM 470

Query: 628  ----------SFDDFLREGLIEYLDVNEENNALIA-----------LYEGDATPD----- 661
                       +D  ++ G++EY+D  EE   +I            L  G A P+     
Sbjct: 471  DPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEQDPN 530

Query: 662  -------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                          TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 531  KRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 590

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RM+++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+S
Sbjct: 591  FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQS 650

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R +  + Y+   +    +  +R  +P R+     R             LD+DG
Sbjct: 651  SIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDK-------LDEDG 703

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            +  PG  +   D+ I K +PL      +   GQ    +     +      E  +VD+V +
Sbjct: 704  IVNPGVRVSGEDIIIGKTAPLAPDAEEL---GQRTKNHTKLDVSTPLRSTENGIVDQVLV 760

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
             +  +    +K  +R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ PDLI+NP
Sbjct: 761  TTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINP 820

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNG 1007
            H  PSRMT+  +IE    K  VS  R   G A    +   D TV+SIS  L +HG+   G
Sbjct: 821  HAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TPFTDVTVDSISRLLREHGYQSRG 874

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGL
Sbjct: 875  FEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGL 934

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKN 1125
            R GEMERDC+IA+GAS  + ERL   SDPF V +C  CGL+     KLK G+  C  C N
Sbjct: 935  RFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPIA-KLKKGLFECRLCNN 993

Query: 1126 GDNISSMKLPYACKLL 1141
               IS + +PYA KLL
Sbjct: 994  KHRISQVHIPYAAKLL 1009


>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score =  586 bits (1510), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 366/982 (37%), Positives = 533/982 (54%), Gaps = 77/982 (7%)

Query: 98   SEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCR 152
            S  L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IGR+PIMLRS  
Sbjct: 2    SATLFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVAETQDFTKVFIGRVPIMLRSSY 61

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA--- 209
            C LY   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A   
Sbjct: 62   CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 121

Query: 210  ---SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESD 256
               S+  S     S   ++M           G+       +++ +IPI++V +A+G  +D
Sbjct: 122  EVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD 181

Query: 257  QEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            +++++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R  
Sbjct: 182  KDILEHICYDFADTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIK 237

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L +V V       K +Y   ++ R++   + +   DD+D+ GNKRL+L+G
Sbjct: 238  YAREILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAG 297

Query: 374  QLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
             L+  LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+T
Sbjct: 298  PLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKEVNLQFAIKAKTITSGLKYSLAT 350

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+        R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP
Sbjct: 351  GNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCP 410

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             +TPEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P S  +  
Sbjct: 411  AETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI--PQSTKIFV 468

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG  +G HR P+     +R+LRR   +   V V  +   + + + +D GR  RPL I +K
Sbjct: 469  NGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEK 528

Query: 610  GISRIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD------ 657
                IK+  ++ L       +G   + D + +G IEY+D  EE   +I++   D      
Sbjct: 529  QRLLIKKKDIQALQLRESPEEG--GWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARV 586

Query: 658  ----ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 587  NPKEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 646

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DR
Sbjct: 647  MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 706

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            GF R +  + Y    +K      +   RP+R       M + H S      LDDDGLA P
Sbjct: 707  GFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPP 759

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +   DV I K +P+    S     GQ  SRY     +      E+ +VD+V L ++ 
Sbjct: 760  GTRVSGEDVIIGKTTPIAQDDS----QGQA-SRYTRRDHSTSLRHSESGMVDQVLLTTNA 814

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  P
Sbjct: 815  DGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIP 874

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMT+G++IE + GK     G+    + F +      TV++IS+ L K G+   G + +Y
Sbjct: 875  SRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMY 929

Query: 1013 SGITGCPLQAYIFMGPIYYQKL 1034
            +G TG  L A IF+GP YYQ+L
Sbjct: 930  NGHTGRKLTAMIFLGPTYYQRL 951


>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 366/979 (37%), Positives = 532/979 (54%), Gaps = 77/979 (7%)

Query: 101  LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVL 155
            L P   RL ++TY+AP+ V++      +G   E+ T   E   V IG++PIMLRS  C +
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTV 64

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
            Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65   YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 210  SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
            S+  S     S   ++M           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125  SMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260  VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A 
Sbjct: 185  LEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKYAK 240

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             IL+   L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+
Sbjct: 241  EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377  SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
              LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301  GGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                    R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +T
Sbjct: 354  GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAET 413

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P S  +  NG 
Sbjct: 414  PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQSTKIFVNGC 471

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
             +G HR P      +R+LRR   +   V V  + + + + + +D GR  RPL I +K   
Sbjct: 472  WVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531

Query: 613  RIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--------- 657
             IK+  ++ L       DG   + D + +G IEY+D  EE   +I++   D         
Sbjct: 532  LIKKRDIRALQLRESPEDG--GWHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPE 589

Query: 658  -ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590  EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 649

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    +K      +   RP+R       M + H S      LDDDGLA PG  
Sbjct: 710  RSLFFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTR 762

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   DV I K +P+    S     GQ  SRY     +      E+ +VD+V L ++ +G 
Sbjct: 763  VSGEDVIIGKTTPISQDDS----QGQA-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGL 817

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRM
Sbjct: 818  RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 877

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G++IE + GK     G+    + F +      TV++IS+ L K G+   G + +Y+G 
Sbjct: 878  TIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGH 932

Query: 1016 TGCPLQAYIFMGPIYYQKL 1034
            TG  L A IF+GP YYQ+L
Sbjct: 933  TGRRLTAMIFLGPTYYQRL 951


>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 942

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 332/901 (36%), Positives = 508/901 (56%), Gaps = 65/901 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV + +G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 65   IPIWVVFRGLGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 122

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +D
Sbjct: 123  -GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELD 181

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+L+  +   +I
Sbjct: 182  DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLALAVKHQTI 238

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 239  TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 298

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P+I      G+E LE    E 
Sbjct: 299  LHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLE----EN 354

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + +++ + + +D 
Sbjct: 355  AHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDA 414

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLREGLIEYLDVNEENNALI 651
            GRVCRPL I +     +++ H+K L +G+        ++  ++ G+IE LD  EE   +I
Sbjct: 415  GRVCRPLFIVENQQLALQKKHVKWLSNGLNDDGDEYKWEHLVKGGIIELLDAEEEETVMI 474

Query: 652  A-----------------LYEGDATPD-------------TTHIEIEPFTILGVIAGLIP 681
            +                 L+  D   D              TH EI P  ILG+ A +IP
Sbjct: 475  SMTPEDLENSRLQQSGVDLHANDGEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIP 534

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 535  FPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFREL 594

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +P
Sbjct: 595  PAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 654

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      RM+   +       ++DDGL APG  +   D+ I K +P+      +    Q
Sbjct: 655  TRE--NTLRMKHGTYDK-----IEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTQ 707

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
            T +R R      K    E+ +VD+V + ++  G   +K  +R TR P++GDKF+SRHGQK
Sbjct: 708  THTR-RDVSTPLKST--ESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQK 764

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F
Sbjct: 765  GTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 824

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK
Sbjct: 825  TDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 879

Query: 1042 MHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1101
            +H+R  GP  +LTRQP EGR+R+GGLR GEMERDC+I++G +  + ERL  +SD + + V
Sbjct: 880  IHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRLHV 939

Query: 1102 C 1102
            C
Sbjct: 940  C 940


>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
          Length = 952

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 371/981 (37%), Positives = 538/981 (54%), Gaps = 74/981 (7%)

Query: 98   SEKLNPHMCRLSDMTYAAPILVNIEY--VQGSHTEKTTMEKND---VVIGRIPIMLRSCR 152
            +  L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  
Sbjct: 2    TATLFPKAARLRNLTYSAPLYVDVSMRVIKKGHDGEELTEPQDLQKVFIGKVPIMLRSSY 61

Query: 153  CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVT 212
            C LY   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A V 
Sbjct: 62   CTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVA 121

Query: 213  S------------STETVK--SKTVIQMEKGKMYL--LLNQFVKKIPIMVVMKAMGMESD 256
                         ST  V+  S+T  +      Y+   L     +IPI++V +A+G  +D
Sbjct: 122  EVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVAD 181

Query: 257  QEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            +++++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + +T G     R  
Sbjct: 182  KDILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGATVGVTREKRIK 237

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A  IL+   L +V V       K +Y   ++ R++   L + A DD+D+ GNKRL+L+G
Sbjct: 238  YAKEILQKEMLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 297

Query: 374  QLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
             L+  LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+T
Sbjct: 298  PLLGGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLAT 350

Query: 430  GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
            GN+        R G++QVL RL++  TL H+ R++    +  K++ PR L  SQWGM+CP
Sbjct: 351  GNWGQANAAGTRAGVSQVLNRLTYASTLPHLRRLNSPIGREGKLAKPRQLHNSQWGMMCP 410

Query: 490  CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
             +TPEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P +  +  
Sbjct: 411  AETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPVVI--PQATKIFV 468

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG  +G HR P      +R+LRR   +   V V  + + + + I +D GR  RPL I +K
Sbjct: 469  NGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEK 528

Query: 610  G--ISRIKEHHMKELLDGVRS---FDDFLREGLIEYLDVNEENNALIALYEGD------- 657
               + + K+ H  +L +G      + D + +G IEY+D  EE   +I++   D       
Sbjct: 529  QRLLIKKKDIHALQLREGGPDDVGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLN 588

Query: 658  ---ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM 713
               A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RM
Sbjct: 589  PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 648

Query: 714  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 773
            D+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRG
Sbjct: 649  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 708

Query: 774  FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPG 833
            F R +  + Y    +K      +   RPDR    A  M + H S      LDDDGLA PG
Sbjct: 709  FFRSLFFRSYRDEEKKMGTLVKEDFGRPDR----ANTMGMRHGS---YDKLDDDGLAPPG 761

Query: 834  EIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKN 893
              +   DV I K +P+    +     GQ  SRY     +      ET +VD+V L ++ +
Sbjct: 762  TRVSGEDVIIGKTTPIAQDDA----QGQA-SRYSRRDHSISLRHSETGIVDQVLLTTNAD 816

Query: 894  GDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 953
            G   +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PS
Sbjct: 817  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 876

Query: 954  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYS 1013
            RMT+G++IE + GK     G+    + F +      TV++IS+ L + G+   G + +Y+
Sbjct: 877  RMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHRCGYQMRGFETMYN 931

Query: 1014 GITGCPLQAYIFMGPIYYQKL 1034
            G TG  L A IF+GP YYQ+L
Sbjct: 932  GHTGRRLTAMIFLGPTYYQRL 952


>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 362/979 (36%), Positives = 531/979 (54%), Gaps = 77/979 (7%)

Query: 101  LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVL 155
            L P   RL ++TY+AP+ V++      +G   E+ T   E   V IG++PIMLRS  C +
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTV 64

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSST 215
            Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A V    
Sbjct: 65   YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 216  ETVKSKTVIQMEKGKMYLLLN----------QFVK--------KIPIMVVMKAMGMESDQ 257
               +S+   +   G    +L+          Q+++        +IPI++V +A+G  +D+
Sbjct: 125  SMAESQN--RPPSGMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182

Query: 258  EVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR 314
            ++++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   
Sbjct: 183  DILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKY 238

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  IL+   L +V V       K +Y   ++ R++   + +   DD+D+ GNKRL+L+G 
Sbjct: 239  AKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGP 298

Query: 375  LVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTG 430
            L+  LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TG
Sbjct: 299  LLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATG 351

Query: 431  NFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 490
            N+        R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP 
Sbjct: 352  NWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPA 411

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P +  +  N
Sbjct: 412  ETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFVN 469

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G  +G HR P      +R+LRR   +   V V  + + + + + +D GR  RPL I +K 
Sbjct: 470  GCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQ 529

Query: 611  ISRIKEHHMKELLDGVR----SFDDFLREGLIEYLDVNEENNALIALYEGD--------- 657
               IK+  ++ L          + D + +G IEY+D  EE   +I++   D         
Sbjct: 530  RLLIKKKDIRALQQRESPEEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKLNPE 589

Query: 658  -ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             A  DT TH EI P  ILGV A +IP+P HNQ+PRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590  EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLRMDT 649

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    +K      +   RP+R       M + H S      LDDDGLA PG  
Sbjct: 710  RSLFFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTR 762

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   DV I K +P+    S     GQ  SRY     +      E+ +VD+V L ++ +G 
Sbjct: 763  VSGEDVIIGKTTPIAQDES----QGQA-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGL 817

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRM
Sbjct: 818  RFVKVRMRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 877

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G++IE + GK     G+    + F +      TV++IS+ L K G+   G + +Y+G 
Sbjct: 878  TIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGH 932

Query: 1016 TGCPLQAYIFMGPIYYQKL 1034
            TG  L A IF+GP YYQ+L
Sbjct: 933  TGRRLSAMIFLGPTYYQRL 951


>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
          Length = 952

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 365/979 (37%), Positives = 534/979 (54%), Gaps = 76/979 (7%)

Query: 101  LNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVL 155
            L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C L
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL 64

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
            +   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65   FQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVR 124

Query: 210  SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
            S+  S     S   ++M           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125  SMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260  VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + +T G     R   A 
Sbjct: 185  LEHICYDFADTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGATVGVTREKRIKYAK 240

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             IL+   L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+
Sbjct: 241  EILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377  SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
              LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301  GGLFRMLFRKLTRDVRGYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                    R G++QVL RL++  TL H+ R++    +  K++ PR L  SQWGM+CP +T
Sbjct: 354  GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 413

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P +  +  NG 
Sbjct: 414  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGC 471

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
             +G HR P      +R+LRR   +   V V  + + R + I +D GR  RPL I +K   
Sbjct: 472  WVGIHREPDMLVKTLRRLRRRVDVNTEVGVVRDIRLRELRIYTDYGRCSRPLFIVEKQRL 531

Query: 613  RIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIA-----LYEGDATPD 661
             I++  +  L       DG   + D + +G IEY+D  EE   +I+     L +   +P+
Sbjct: 532  LIRKKDIHALQQRESPEDG--GWHDLVSKGFIEYIDTEEEETTMISMTIRDLVQARNSPE 589

Query: 662  T------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590  EAYSDNYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 649

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L Y+L YPQ+PL+TTR +E + + +L AG  A VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGIYAIVAIACYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    +K      +   RPDR    A  M + H S      LDDDGLA PG  
Sbjct: 710  RSLFFRSYRDEEKKMGTLVKEDFGRPDR----ANTMGMRHGS---YDKLDDDGLAPPGTR 762

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   DV I K +P+    +     GQ  +RY  +  +      ET +VD+V L ++ +G 
Sbjct: 763  VSGEDVIIGKTTPIAQDEA----QGQAAARYTRSDHSISLRHSETGIVDQVLLTTNADGL 818

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRM
Sbjct: 819  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 878

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G++IE + GK     G+    + F +      TV++IS+ L K G+   G + +Y+G 
Sbjct: 879  TIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGH 933

Query: 1016 TGCPLQAYIFMGPIYYQKL 1034
            TG  L A IF+GP YYQ+L
Sbjct: 934  TGRQLSAMIFLGPTYYQRL 952


>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa s.n.]
          Length = 951

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 368/979 (37%), Positives = 534/979 (54%), Gaps = 77/979 (7%)

Query: 101  LNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVL 155
            L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C L
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL 64

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
            +   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65   FQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 210  SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
            S+  S     S   ++M           G+       +++  IPI++V +A+G  +D+++
Sbjct: 125  SMAESQNRPPSTMFVRMLARTSAKGGSSGQYIRATLPYIRVDIPIIIVFRALGFVADKDI 184

Query: 260  VQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A 
Sbjct: 185  LEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKYAR 240

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             IL+   L +V +       K +Y   ++ R++   L + A DD+D+ GNKRL+L+G L+
Sbjct: 241  EILQKEMLPHVGMAEYCETKKAYYFGYIIHRLLLVALGRRAEDDRDHYGNKRLDLAGPLL 300

Query: 377  SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
              LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301  GGLFRMLFRKLTRDVRGYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                    R G++QVL RL++  TL H+ R++    +  K++ PR L  SQWGM+CP +T
Sbjct: 354  GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 413

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P +  +  NG 
Sbjct: 414  PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PEATKIFVNGC 471

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
             +G HR P      +R+LRR   +   V V  + + + + I +D GR  RPL I +K   
Sbjct: 472  WVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 531

Query: 613  RIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDA-----TPD 661
             IK+  ++ L       DG   + D + +G IEY+D  EE   +I++   D       P+
Sbjct: 532  LIKKKDIQALQQRETPEDG--GWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPE 589

Query: 662  T------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                   TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590  EAYSEYYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDT 649

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    +K      +   RP+R     + M + H S      LDDDGLA PG  
Sbjct: 710  RSLFFRSYRDEEKKMGTLVKEDFGRPNRN----DTMNMRHGS---YDKLDDDGLAPPGTR 762

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   DV I K SP+    S     GQ  SRY     +      ET +VD+V L ++ +G 
Sbjct: 763  VSGEDVIIGKTSPIAQDES----QGQA-SRYTKRDHSTSLRHSETGMVDQVLLTTNADGL 817

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRM
Sbjct: 818  RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 877

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G++IE + GK     G+    + F +      TV++IS+ L K G+   G + +Y+G 
Sbjct: 878  TIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGH 932

Query: 1016 TGCPLQAYIFMGPIYYQKL 1034
            TG  L A IF+GP YYQ+L
Sbjct: 933  TGRRLTAMIFLGPTYYQRL 951


>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 362/979 (36%), Positives = 528/979 (53%), Gaps = 77/979 (7%)

Query: 101  LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVL 155
            L P   RL ++TY+AP+ VN+      +G   E+ T   E   V IG++PIMLRS  C +
Sbjct: 5    LFPKAARLRNLTYSAPLYVNVTKRIIRKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTV 64

Query: 156  YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
            Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65   YHNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSDNHVYVFKKRQPNKYAYVAEVR 124

Query: 210  SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
            S+  S     S   +QM           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125  SMAESQNRPPSSMFVQMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260  VQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
            ++    D   + ++    PS+EE     I  Q+ AL+Y+ GK + ST G     R   A 
Sbjct: 185  LEHTCYDFSGTQMMELPHPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKYAK 240

Query: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
             I +   L +V V       K +Y   ++ +++     +   DD+D+ GNKRL+L+G L+
Sbjct: 241  EIFQKEMLPHVGVGEYCETKKAYYFGYIIHQLLLCAFGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377  SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
              LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301  GGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433  DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                    R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +T
Sbjct: 354  GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAET 413

Query: 493  PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
            PEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P S  +  NG 
Sbjct: 414  PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQSTKIFVNGC 471

Query: 553  ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
             +G HR P      +R+LRR   +   V V  + + + + + +D GR  RPL I +K   
Sbjct: 472  WVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531

Query: 613  RIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--------- 657
             IK+  ++ L       DG   + D + +G IEY+D  EE   +I++   D         
Sbjct: 532  LIKKKDIRALQLRESPEDG--GWHDLVSKGFIEYVDTEEEETTMISMTINDLVSARLNPE 589

Query: 658  -ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590  EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 649

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650  LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    +K      +   RP+R       M + H S      LDDDGLA PG  
Sbjct: 710  RSLFFRSYRDEEKKMGTLVKEDFGRPNR----ENTMGMRHGS---YDKLDDDGLAPPGTR 762

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   DV I K +P+    S   P     SRY     +      E+ +VD+V L ++ +G 
Sbjct: 763  VSGEDVIIGKTTPISQDDSQGQP-----SRYTRRDHSTSLRHSESGMVDQVLLTTNADGL 817

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRM
Sbjct: 818  RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRM 877

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G++IE + GK     G+    + F +      TV++IS+ L K G+   G + +Y+G 
Sbjct: 878  TIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGH 932

Query: 1016 TGCPLQAYIFMGPIYYQKL 1034
            TG  L A IF+GP YYQ+L
Sbjct: 933  TGRRLTAMIFLGPTYYQRL 951


>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
          Length = 1029

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 351/977 (35%), Positives = 531/977 (54%), Gaps = 86/977 (8%)

Query: 238  FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALE 293
            +VK+ IP+++V +A+ + SD ++++ +     D     +L+ S++E     I   + A +
Sbjct: 73   YVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQE--GQPIQGADLARD 130

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            ++  +    +  S  ++R+  A  IL+  FL ++    +    K F++  M+ R+++  L
Sbjct: 131  FIARRGNVPSLKS--HERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMVNRLLKCAL 188

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQ 412
             +   DD+D++G KRL+L+G L++    +LF+    +  K     + K   S +  ++  
Sbjct: 189  GRAEPDDRDHLGKKRLDLAGPLMT----NLFRLQFDKATKDFYRYMQKRVESGQPINIMA 244

Query: 413  FIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSR 471
                  IT GL+ +L+TGN+ D K+    + G++QVL+R +F  TL H+ R +    +  
Sbjct: 245  GFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFSSTLSHLRRTNAPIGREG 304

Query: 472  KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDL 531
            K++ PR L  + WG +CP +TPEG+ACGLVKNL+LM+ VT   E GPL++      VE L
Sbjct: 305  KIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETGPLLNYVMTKHVEAL 364

Query: 532  ELLSGEELHNPNSFLVIFNGLILGK-HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            E    E   NP +  +  +G+      R PK   D +RKLRR G     VS+  + +++ 
Sbjct: 365  E--DWEPRLNPRATKIFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSHVSLVWDIREKE 422

Query: 591  VYIASDGGRVCRPLVIADKGISR--------IKEH--------HMKE----LLDGVR--S 628
              I+ D GR+ RPL + +   S          KEH        ++KE      D +R   
Sbjct: 423  FKISGDSGRIVRPLFVVETDRSSENLGNLVLNKEHINKLDQTAYLKESGFQWTDEIRPYG 482

Query: 629  FDDFLREGLIEYLDVNEENNALIAL----------------YEGDATP------------ 660
            + D L  G++EYLD  EE  A+I +                 E +  P            
Sbjct: 483  WTDLLESGVVEYLDAEEEETAMICMTPEALADSKARWLGMEIENEDDPLRRNDPLLNPHA 542

Query: 661  -DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYL 719
               TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RM+++  +
Sbjct: 543  HTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANI 602

Query: 720  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 779
            L YPQ+PL  T  ++ + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R + 
Sbjct: 603  LYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 662

Query: 780  VKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
             + Y    +   +S  ++  +P R+    + +++ H +      +D+DG+ APG  +   
Sbjct: 663  YRTYQDSEKSVGHSVVEQFEKPTRS----DTLRLKHGT---YDKIDEDGIVAPGVRVSGE 715

Query: 840  DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIK 899
            D+ + K +P+      +   GQ   ++     +      E+ +VD+V L +   G    K
Sbjct: 716  DIIMGKTAPMAPDAEEL---GQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAK 772

Query: 900  FLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGK 959
              +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PDLI+NPH  PSRMT+  
Sbjct: 773  VRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAH 832

Query: 960  MIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCP 1019
            +IE    K     G     + F +      TV  +SE L   G+   G +++Y+G TG  
Sbjct: 833  LIECQLSKVATLRGDEGDATPFTKV-----TVTQVSELLRTMGYQSRGFEVMYNGHTGRK 887

Query: 1020 LQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIA 1079
            + A +F+GP YYQ+L+HMV DK+H+R  GP  +LTRQP EGRAR+GGLR GEMERDC+IA
Sbjct: 888  MVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERDCMIA 947

Query: 1080 YGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI--CSTCKNGDNISSMKLPYA 1137
            +GAS  + ERL   SDPF V VC +CGL+     KLK     C  C N + IS + LPYA
Sbjct: 948  HGASSFLKERLFDVSDPFRVHVCDICGLMTVIA-KLKKNTFECKNCNNKNKISQIYLPYA 1006

Query: 1138 CKLLIQELQSMNIVPRL 1154
             KLL QEL +MNI  RL
Sbjct: 1007 AKLLFQELWAMNIAARL 1023


>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 355/942 (37%), Positives = 514/942 (54%), Gaps = 72/942 (7%)

Query: 133  TMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
            T E   V IG++PIMLRS  C L+   E +L  LGECP D GGYFII G+EKVL+ QE++
Sbjct: 14   TQEFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 73

Query: 193  SKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLLNQ 237
            S N V +   ++ N  A      S+  S     S   ++M           G+       
Sbjct: 74   STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLP 133

Query: 238  FVK-KIPIMVVMKAMGMESDQEVVQMVGRD---PRYSALLLPSIEECANLDIYTQEKALE 293
            +++ +IPI++V +A+G  +D+++++ +  D    +   LL PS+EE     I  Q+ AL+
Sbjct: 134  YIRTEIPIIIVFRALGFVADKDILEHICYDFLDTQMMELLRPSLEEA--FVIQNQQVALD 191

Query: 294  YLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAML 353
            Y+ GK + ST G     R   A  IL+   L +V V       K +Y   ++ R++   L
Sbjct: 192  YI-GK-RGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 249

Query: 354  NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFD 409
             +   DD+D+ GNKRL+L+G L+  LF  LF+ +  +V    QK VD            +
Sbjct: 250  GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD-------NGKEVN 302

Query: 410  LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEK 469
            L   I   +IT GL+ +L+TGN+        R G++QVL RL++  TL H+ R++    +
Sbjct: 303  LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 362

Query: 470  SRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVE 529
              K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM ++T      P++        E
Sbjct: 363  EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTE 422

Query: 530  DLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQR 589
            + E +S   +  P +  +  NG  +G HR P+   + +RKLRR   +   V V  +   +
Sbjct: 423  NFEEISPAVI--PQATKIFVNGCWVGIHRNPELLVNTLRKLRRQVDVNTEVGVIRDIHLK 480

Query: 590  CVYIASDGGRVCRPLVIADKGISRIKEHHMKELL------DGVRSFDDFLREGLIEYLDV 643
             + + +D GR  RPL I +K    IK+  ++ L       DG   + D + +G IEY+D 
Sbjct: 481  ELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEDG--GWHDLVAKGYIEYVDT 538

Query: 644  NEENNALIALYEGD----------ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
             EE   +I++   D          A  +T TH EI P  ILGV A +IP+P HNQSPRNT
Sbjct: 539  EEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 598

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+ 
Sbjct: 599  YQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIA 658

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRGF R +  + Y    +K      +   RP+R       M 
Sbjct: 659  CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENT----MG 714

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H S      LDDDGLA PG  +   DV I K +P+        P GQ  SRY     +
Sbjct: 715  MRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQE----EPQGQA-SRYTRRDHS 766

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  E+ +VD+V L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED
Sbjct: 767  TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 826

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             P++  GI PD+I+NPH  PSRMT+G++IE + GK     G+    + F +      TV+
Sbjct: 827  MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDV-----TVD 881

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKL 1034
            +IS+ L K G+   G + +Y+G TG  L A IF+GP YYQ+L
Sbjct: 882  NISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 923


>gi|374724390|gb|EHR76470.1| DNA-directed RNA polymerase subunit B [uncultured marine group II
            euryarchaeote]
          Length = 1202

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 385/1239 (31%), Positives = 621/1239 (50%), Gaps = 154/1239 (12%)

Query: 33   QLLPEFLKVRGLVKQHLDSFNYFVNTG------IRKIVRANDRI---------------V 71
            +++  F K R LV   L S++  + +G      + KI+R N R+               +
Sbjct: 3    EIIQSFFKERSLVNHQLASYDDCIPSGDNSLSRMEKIIR-NIRVGTDEEIDDDDGGFIKL 61

Query: 72   SGIDPSIFLRFKDVRIGQPSM-TVDGVSEKLNPHMCRLSDMTYAAPILVNIE-YVQGSHT 129
              +D  I +R K++++G+P++   +G      P  CRL  +TY +P+ ++ + +  G  +
Sbjct: 62   DVVDQDITIRLKNIQLGEPTIREANGAEHPSTPMECRLRKLTYMSPVTIDFQIFRNGIRS 121

Query: 130  EKTTMEKNDVVIGRIPIMLRSCRCVLYG---------------KDEAE----LARLGECP 170
             K    +  V +G +PIM+RS RC L+                +D A     L + GE P
Sbjct: 122  PK----EEGVQVGSMPIMVRSKRCNLHAGHIAGDRQLYPTTSTEDSALWDNLLRKKGEDP 177

Query: 171  LDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDK---KGNINASVTSSTETVKSKTVIQME 227
            LDPGGYFII GTE+VL+  E L+ NRV ++ +K   K    A + S  + ++    ++  
Sbjct: 178  LDPGGYFIINGTERVLISMEDLAPNRVTVEINKRYAKRTEVAKIFSQKDGMRKPLNVEKR 237

Query: 228  KGKMYL--LLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDI 285
            +  M +  +       IP++++M+A+G+E+DQEV Q +         ++ ++ E  + + 
Sbjct: 238  RDGMLMVKISTAGTTAIPVVLLMRALGIENDQEVFQAIAGPTDTFKYIVANLNEVNDNEE 297

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
            Y+ +   E  E   K+   G     RE R   +L    L ++       + K  ++  ++
Sbjct: 298  YSVQSMTEAHEWLQKKFAAGQQREYREQRVNQLLDRELLPHLGDQPGARKKKAIFLGRIV 357

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP-SR 404
            R+++E  L     +DKD+  NKR+ L+G LV    EDLF+    ++ + +   L +  +R
Sbjct: 358  RQVLEMALTNREPNDKDHYANKRVRLAGDLV----EDLFRVSSGQLARDLKYQLERHHNR 413

Query: 405  SSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
                 ++  +  D +T  +   L+TGN+        R G++Q+L R +++ +L HM RV+
Sbjct: 414  KRELKITSCLRPDVLTSKIMHALATGNW-----VGGRSGVSQLLDRTTYLASLSHMRRVT 468

Query: 465  PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
                +S+     R L P+QWG LCP +TPEG+ CGLVKN A M  ++    E  +     
Sbjct: 469  SPLVRSQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAAQMIDISEHISEIEVRQQLD 528

Query: 525  CLGV-EDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
             L V E  +  SG+ +H         NG I G H+  K      +  RR G I   VS+ 
Sbjct: 529  ELDVFEPDDWTSGDRVH--------VNGDIYGIHKNGKNLVRHFKSARRRGTIPAEVSIR 580

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGL------ 637
             + + + ++I +D GR+ RPL+I   G  R+   +++ L  G  +F   + EG+      
Sbjct: 581  YDRENKDIFINTDKGRILRPLLILYDGAPRLTNENLQALRAGEMTFKQLVNEGIVEWVDA 640

Query: 638  ---------------------------------IEYLDVNEEN------NALIALYEGDA 658
                                             +E+ ++ E         A + +  G+ 
Sbjct: 641  EEEEDLLITPRPFVLPETVQSGPLAGRPLTNENVEWTNLGEPGATQANLKARVRMPNGEW 700

Query: 659  -----------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                       T + TH EI+P  +LGV A LIPYP HN +PR T   AM KQ++G  + 
Sbjct: 701  EIANIKVDLLYTEEHTHCEIDPQLVLGVCAALIPYPEHNSTPRVTGGTAMVKQSLGLPSA 760

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   R D+  ++L YP R +  T  +E   +D+   GQN  VA+MS  GY+++DA++MN+
Sbjct: 761  NYRMRPDTRAHILHYPHRSITRTNAMETTHFDERPGGQNFIVAIMSLHGYNMQDAVIMNR 820

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT---GPGAERMQVVHHSNLLLLIL 824
             S++ G GR    + Y A  +++     + I +P  +     G +  +   H       L
Sbjct: 821  GSVNLGLGRSTFNRTYNAERRRFPGGQVEEIEKPGSSLQEVKGLKPEEAYRH-------L 873

Query: 825  DDDGLAAPGEIIKPNDVYINKESP----LETRGSIMSPTGQTDSRYRSARQTYKGPDGET 880
            + DGL  P + +   +V + K SP     E+ G       +        R       GE 
Sbjct: 874  EADGLPLPEKELVGGEVLVGKTSPPRFLEESAGGAFLLAQERRESSMLVRH------GER 927

Query: 881  CVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGI 940
              VD V +    +    ++ ++R  + PE+GDKF+SRHGQKGV G +V  ED PF+  GI
Sbjct: 928  GWVDNVYVTESLDSGRLVRVMVRSHKIPEVGDKFASRHGQKGVIGRLVDPEDMPFTADGI 987

Query: 941  CPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF-GEPSGHADTVESISETLV 999
             PDLI+NPH  PSRMTV  ++E++GGK G   GR   G+AF GE  G      S+ + LV
Sbjct: 988  VPDLIINPHAIPSRMTVAHVLEMIGGKVGSLEGRRIDGTAFRGEKEG------SLRDGLV 1041

Query: 1000 KHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTE 1059
            ++G +++G++ + +G TG    A IF+G IYYQ+L H+V  K+HAR  G   +LTRQPTE
Sbjct: 1042 RNGLAHSGRETMINGETGEVYPADIFVGCIYYQRLHHLVSSKIHARSRGRVQVLTRQPTE 1101

Query: 1060 GRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGI 1119
            GRAR GGLR GEMERDCLIA+GASM+I +RL+  SD  ++ VC   G + +Y+ K +  +
Sbjct: 1102 GRARQGGLRFGEMERDCLIAHGASMVIKDRLLDESDGIDMYVCAQSGHIAWYDPKRRTYV 1161

Query: 1120 CSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
                 +G  +  ++  YA KLL+ E++S+ +  RL+L +
Sbjct: 1162 SPIHGDGAEVYKVQTSYAFKLLLDEMKSLGVAMRLELED 1200


>gi|118364886|ref|XP_001015664.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89297431|gb|EAR95419.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1226

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 393/1225 (32%), Positives = 636/1225 (51%), Gaps = 133/1225 (10%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNT----------------------GIRKIVRAN 67
            D ++++ E+ K  GL    + S+N+F+ +                         + +R+ 
Sbjct: 29   DCWKIIDEYFKDNGLCSHQIKSYNHFIESLPLIMEDFKIEVRPTENYMNSNKKEQQIRSQ 88

Query: 68   -------DRIVSGIDPSIF---LRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPI 117
                   DR    + P  F     F   R GQ + +    ++K+ P M R+SD+ Y   I
Sbjct: 89   TSYTLTFDRPRKPLPPQKFHMERTFGWGRRGQDAQS-SSHAQKIYPMMARISDLDYFVEI 147

Query: 118  LVNIEYVQ------GSHTEK--TTMEKND--VVIGRIPIMLRSCRCVLYGKDEAELARLG 167
             + ++ V+      G+  ++  T+ +KN   + + ++P+M++S  C L G++     + G
Sbjct: 148  KIPVQLVRTIKHPDGTEQKELITSRDKNQNLITLFKLPVMVQSMYCSLAGENLEGRIKHG 207

Query: 168  ECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA-----SVTSSTETVKSKT 222
            EC  D GGYFIIKG+EKV++ QE+++ N V +   K   +       S+   T  V+SK 
Sbjct: 208  ECQFDQGGYFIIKGSEKVIIAQERMAFNFVYVFQQKDPKMPWIAEIRSIRDKTNAVQSKF 267

Query: 223  VIQME----KGKMYLLLNQFVKKIPIMVVMKAMG-MESDQEVVQMVG---RDPR------ 268
             ++++    + ++Y       + IPI V++KA+G +ESD+E+++ +    +DP+      
Sbjct: 268  ALKLKLRDGEYQLYARCKLINEDIPIFVLLKALGCVESDKEMMERIFYNLKDPKNEQMME 327

Query: 269  --YSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLAN 326
               S+LLL   + C N     + +AL ++  ++  +T      +    A   L+   L +
Sbjct: 328  MLRSSLLLA--QHCNN-----KREALIFIGYRINATTNYRGSQEAMQSAEDTLKLYLLPH 380

Query: 327  VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKT 386
            +    ++   K F++  M+++++ A L K   DD+D+ G KRL+++G L+S LF++  + 
Sbjct: 381  IGTQESDNDKKLFFIGYMIQKLLNAALGKTQEDDRDHYGKKRLDMAGALISQLFKERLRI 440

Query: 387  MISEVQKTVDIILSKPSRSSRFDLSQFI-VRDS--ITVGLERTLSTGNF-DVKRFKMHRK 442
                 +K +   ++  SR ++  L+  + + D   I+  +   L+TGN+      ++ + 
Sbjct: 441  FQKNAKKNLQQKINDISRDAQKSLNVIVDIFDHKLISDHIRLALATGNWGQTADGEVVKT 500

Query: 443  GMTQVLAR-LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
            G+ QVL R  S   T+ HM RV+   + + K++ PR L  + +G++CP +TPEG+  G+V
Sbjct: 501  GVAQVLKRDTSLFATMSHMRRVNAPMKSAAKLARPRQLHNTHYGLICPAETPEGQKIGMV 560

Query: 502  KNLALMTHVTT--DEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRR 559
            KNL+L+  V+     ++   I       +   ++L+ +    P    V FNG  +G    
Sbjct: 561  KNLSLLAQVSLGLSSQDNLKIQEQLEEQINQFDILNLKLEKIPYQTKVFFNGNWIGFTET 620

Query: 560  PKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK--------GI 611
            P+   DV +++RR  KI  F S+  +   + + I +D GR  RP+    +         I
Sbjct: 621  PEQIIDVFKEIRRLQKIDGF-SIVRDIINKEIRIYTDQGRGMRPVFTVQEICEGKNRLKI 679

Query: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL-----YEGDATPDT---- 662
            ++ K + + +  +G ++F   + EG IE LDV EE  ALIA+     Y  D    T    
Sbjct: 680  TKSKLYAILQQFEG-KAFQKLIDEGFIELLDVEEEEGALIAVDINDFYHTDDPRRTNLPF 738

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH EI P  ILGV A +IP+ HHNQ PRNT Q AMGKQAMG  + N   R+D+L ++L Y
Sbjct: 739  THCEIHPAMILGVCASVIPFGHHNQGPRNTLQSAMGKQAMGLNSTNFHMRLDTLCHILYY 798

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ  L ++++++ +    +  G NA VA+  ++GY+ ED+I++N+S++DRG  R I+ + 
Sbjct: 799  PQIALASSKSLQYITAKDIPIGSNAVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYRT 858

Query: 783  YTAINQKYA---NSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPN 839
            Y    +K     N   + I  PD      E+  ++  S    L LD DG+  PG  +   
Sbjct: 859  YKTTEKKEHMGLNPVIEHIRFPD------EKKTIIPAS-YSFLKLDYDGIIPPGTQVTGE 911

Query: 840  DVYINKESPL-ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
            DV I K   L +T GS        D +Y+    +      E   VD V L  DK+G   +
Sbjct: 912  DVLIGKVVELPKTEGS--------DKQYKDV--SLGCRRSEIGYVDTVILSEDKDGMYIV 961

Query: 899  KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
            K  +R  R P++GDKF+SRHGQKG CG  ++ ED P++  GI  +L++NPH  PSRMT+G
Sbjct: 962  KVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPHCIPSRMTIG 1021

Query: 959  KMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGC 1018
             MIE L  K     G +   + F         ++ I+  L  +G+   G +++Y+  TG 
Sbjct: 1022 HMIEGLNSKLSSLKGIWGDATPFS-----GIKLQDIASELHTYGYQRYGNEVLYNPYTGM 1076

Query: 1019 PLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLI 1078
             L   I+ GP +YQ+L+H+V DKM++R  GP V + RQPT GR+R GGLR GEMERDC+I
Sbjct: 1077 RLSTQIYYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCII 1136

Query: 1079 AYGASMLIFERLMVSSDPFEVQVCRVCGLLG---YYNHKLKAGICSTCKNGD----NISS 1131
            A+G S  + ER    SD F   VC  CGL       NHK     C+ C  GD     I  
Sbjct: 1137 AHGTSNFLKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYD---CTGCSQGDKKHYKIVQ 1193

Query: 1132 MKLPYACKLLIQELQSMNIVPRLKL 1156
            + LPYA K LIQEL +M+IVPR+K+
Sbjct: 1194 VYLPYAAKQLIQELMAMHIVPRIKV 1218


>gi|6606109|gb|AAF19067.1|AF107795_1 DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum]
          Length = 1109

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 382/1115 (34%), Positives = 578/1115 (51%), Gaps = 151/1115 (13%)

Query: 75   DPSIF----LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGS 127
            DP +     L+F  V + +PSMT  DG +  + P   RL ++TYA+P+ + I  + ++G 
Sbjct: 24   DPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGR 83

Query: 128  -----------------------------HTE-KTTME----KNDVVIGRIPIMLRSCRC 153
                                         H E K TME    + ++ IG++PIML+S  C
Sbjct: 84   ERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYC 143

Query: 154  VLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII-------DTDKKGN 206
            +L    E  L    ECP D GGYF+I G+EKVL+ QE+ + N V +        T     
Sbjct: 144  ILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAE 203

Query: 207  INASVTSSTETVKSKTVIQMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
            I ++V   +  +   ++    KG          +   L      IPI+VV +A+G+ SD+
Sbjct: 204  IRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 263

Query: 258  EVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN--DRE 312
            +++  +  D   +++L    P IEE     I  +E AL+++      S  GS P   ++E
Sbjct: 264  DILNHICYDRNDTSMLEMLKPCIEE--GFVIQDREVALDFI------SKRGSSPMSMNQE 315

Query: 313  GR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
             R   A  I++  FL ++     +   K F++  M+ R+++  L +  +DD+D+ G KRL
Sbjct: 316  KRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRYVDDRDHFGKKRL 375

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            +L+G L++ LF  LF  +  ++ K V   +       +  L+  +   ++T GL+  L+T
Sbjct: 376  DLAGPLLANLFRVLFMRLTKDLYKYVQRCVET---GRQLYLNIGVKASTLTGGLKYALAT 432

Query: 430  GNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            GN+ + K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++C
Sbjct: 433  GNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 492

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVI 548
            P +TPEG+ACGLVKNLALM  +T      P+I        E LE    E   +PNS  V 
Sbjct: 493  PAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNREVLEEF--EPQVSPNSTKVF 550

Query: 549  FNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIAD 608
             NG+ +G HR P      ++ LRR   I   VS+  + + R   I +D GRVCRPL + D
Sbjct: 551  VNGVWVGVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVD 610

Query: 609  K--------GISRIKEHHMK--------------ELLDGVRSFDDFLREGLIEYLDVNEE 646
                      +  +KEH  K              E  +    +D  ++ G+IEY+D  EE
Sbjct: 611  NDPKSENSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEE 670

Query: 647  NNALIALYEGD-------------ATPDTT------------------HIEIEPFTILGV 675
               +I +   D                DTT                  H EI P  ILG+
Sbjct: 671  ETIMIVMTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGI 730

Query: 676  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
             A +IP+P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E 
Sbjct: 731  CASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSMEF 790

Query: 736  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
            + + +L AG+N  VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +    +  
Sbjct: 791  LKFRELPAGRNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVV 850

Query: 796  DRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSI 855
            +R  +P R    ++ +++ H +      +DDDG+ +PG  +   D+ I K SPL      
Sbjct: 851  ERFEKPMR----SDTLRMKHGT---YDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEE 903

Query: 856  MSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL-CIKFLIRHTRRPELGDKF 914
            +   GQ   ++     +      E+ +VD+V L S  N DL  +K  +R T+ P++GDKF
Sbjct: 904  L---GQRTKQHTKLDVSTPLRSTESGIVDQV-LVSTSNDDLKFVKVRMRTTKIPQIGDKF 959

Query: 915  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 974
            +SRHGQKG  G   + ED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R
Sbjct: 960  ASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSSLR 1017

Query: 975  FHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
             + G A    +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+GP YYQ+
Sbjct: 1018 GYEGDA----TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 1073

Query: 1034 LKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            L+HMV DK+HAR  GP  +LTRQP EGRAR+GGLR
Sbjct: 1074 LRHMVDDKIHARARGPTQILTRQPVEGRARDGGLR 1108


>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
          Length = 908

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 331/876 (37%), Positives = 490/876 (55%), Gaps = 68/876 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +  D + S +L    P I++     I  +E AL+++  +
Sbjct: 59   IPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDD--GFVIQDREVALDFIGNR 116

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +
Sbjct: 117  --GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERREL 174

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L++ LF  LFK +  +V + +   +        F+LS  +   +
Sbjct: 175  DDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVET---HKEFNLSLAVKHQT 231

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 232  ITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 291

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P+I      G+E LE    E
Sbjct: 292  QLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLE----E 347

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D
Sbjct: 348  NAHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTD 407

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVR-------SFDDFLREGLIEYLDVNEENNA 649
             GRVCRPL I +     +++ H+K L  G R        ++  ++ G+IE LD  EE   
Sbjct: 408  AGRVCRPLFIVENQQLALQKKHIKWLNQGFRDDDGEEFKWEQLVKTGIIELLDAEEEETV 467

Query: 650  LIALY-------------------EGDATPDT-----------THIEIEPFTILGVIAGL 679
            +I++                    +GD  P             TH EI P  ILGV A +
Sbjct: 468  MISMTPEDLENSRLQSAGINPHENDGDFDPAARLKAGINAHTWTHCEIHPSMILGVCASI 527

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + 
Sbjct: 528  IPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFR 587

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AGQNA VA++ YSGY+ ED ++MN+SS+DRG  R I  + Y  + +K      +   
Sbjct: 588  ELPAGQNAIVAILCYSGYNQEDFVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFE 647

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R      RM+   +       L+DDGL APG  +K  D+ I K +P+      +   
Sbjct: 648  KPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTNVKGEDIIIGKTAPIPPDSEELGQR 700

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
             +T +R R      K    E  +VD+V + ++  G   +K  +R TR P++GDKF+SRHG
Sbjct: 701  TRTHNR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHG 757

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   +QED PF+  GI PDL++NPH  PSRMT+G ++E L  K     G     +
Sbjct: 758  QKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDAT 817

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F +      TVES+S  L + G+   G +++Y G TG  LQA I++GP YYQ+LKHMV 
Sbjct: 818  PFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTYYQRLKHMVD 872

Query: 1040 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERD 1075
            DK+H+R  GP  +LTRQP EGR+R+GGLR GEMERD
Sbjct: 873  DKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 908


>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1203

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 380/1197 (31%), Positives = 627/1197 (52%), Gaps = 98/1197 (8%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI----------- 78
            D +++L  F +  GLV Q ++S+  FV   I+ +       V  + P             
Sbjct: 32   DIWKVLHMFFQTHGLVSQQINSYESFVENIIKYVRGHEGTFVVRVKPQYKEEERMDAQTE 91

Query: 79   -FLRFKDVR--IGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV-------QGSH 128
               +F+  R  +G+ ++ +D   E++ P + RL D+TY+  + +++E          GS 
Sbjct: 92   YLYQFQIQRCFMGKKNIHIDKFEEEIFPMIARLRDLTYSRQLKIDLEVTMQQRNKRDGSI 151

Query: 129  TEKTTMEKNDVVIGRIPIMLRSCRCVLYG--KDEAELARL---GECPLDPGGYFIIKGTE 183
             EK+      +   ++PIM+RS  C L    KD  ++ +    GEC  D GGYFI++G+E
Sbjct: 152  EEKSKQTFKGLPFFKLPIMVRSRFCSLPKDPKDPEQIQQRIQSGECGFDQGGYFILRGSE 211

Query: 184  KVLLIQEQLSKNRVIIDTDKKGN--INASVTSSTETVKSKTVIQME------KGKMYLLL 235
            KV++ QE+++ N V++   K  N    A + S  +   +    ++E         +   +
Sbjct: 212  KVIVAQERIANNVVLVFKSKIVNKPWVAEIRSQPDLWSNPNNFKVELRYIQNTPVIRCSV 271

Query: 236  NQF--VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL------LLPSIEECANLDIYT 287
             QF   + IP+  + +A+G+ SDQE+++ +  +     +      L  S++E    +   
Sbjct: 272  KQFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDEQMGPMLEMLYGSLQEGGEYE--D 329

Query: 288  QEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
            +E  L ++  K+K++     P      A  ++    L ++ V + +   K +++  ++ R
Sbjct: 330  EELCLRWIGNKIKKAE-NQDPETLIQEAKKLINKNILPHIGVSSESRDRKAYFIGYIVHR 388

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR 407
            ++ A L K   DD+D+ G KRL+++G ++  +F+  F++     +K ++  ++  +    
Sbjct: 389  LLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFESFKQNAKKALEKYINGENMRQP 448

Query: 408  FDLSQFIVRDSITVGLERTLSTGNFD-VKRFKMHRKGMTQVLAR-LSFIGTLGHMTRVSP 465
             D+  F   + I+  ++  L+TGN+   K  ++ + G+ Q L R  S   TL H+ R++ 
Sbjct: 449  DDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKTGVAQTLKRETSLFATLSHLRRMNA 508

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD---EEEGPLISL 522
                  K+S PR L  + +G +CP +TPEG+  G+VKNL+LMT V+ D   +++  L+ L
Sbjct: 509  PINPQMKLSKPRQLHNTHFGFICPAETPEGQKIGIVKNLSLMTAVSNDLQQKDKETLLKL 568

Query: 523  CYCL--GVEDLELLSGEELHN--PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGK--I 576
               L   V D +LL G+      P    V+ +G  +G  R P+ F    + LR A +  I
Sbjct: 569  IMVLKQDVFDFQLLQGDFQAQDIPKMTKVLVDGNWIGFTRNPEQFIQEFKNLRSAEESFI 628

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREG 636
               VS+  +   + + I +D GR  RPL I      ++K++ +    D    ++  L+  
Sbjct: 629  PIEVSINFDYVNKEIRIYTDAGRCMRPLFIVQDNKLKLKKNQLNSFTD----WEQLLQNK 684

Query: 637  LIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPR 690
             +E LDV EE  +LIA+     T  T      TH EI P  + GV A +IP+ +HNQ PR
Sbjct: 685  CVELLDVEEEEGSLIAMDLNIMTRGTQNFKRYTHCEIHPCMMFGVCASVIPFANHNQGPR 744

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NT Q AMGKQAMG  + N   R D+L+++L YPQ+PL +++ ++ +  +++  G N   +
Sbjct: 745  NTLQSAMGKQAMGLNSTNFNIRFDTLVHILHYPQKPLASSKAVDFITVNEVPIGINCVTS 804

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA-NSTSDRILRPDRTGPGAE 809
            +  ++GY+ ED+I++N+ ++DRGF R +  + Y     K   N T  +I +P   G    
Sbjct: 805  IACFTGYNQEDSIIINQYAIDRGFFRSVFYRTYKESEDKDPDNFTETKITKP--LGD--- 859

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM--SPTGQTDSRYR 867
                 +++  L + LD DG+  PG  +   +  I KE  ++   +IM  +  GQ +++  
Sbjct: 860  -----NYAGKLFIKLDSDGIVPPGTKVDEEEPIIGKELIID---NIMLNTANGQKNTKEC 911

Query: 868  S--ARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 925
            S   R+  +G      VVD V +  ++ G   +K  +R  R P++GDKF SRHGQKG CG
Sbjct: 912  SLLTRRAERG------VVDSVLISENQKGYKLVKVKVRSLRIPQIGDKFCSRHGQKGTCG 965

Query: 926  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPS 985
               +QED PF+  GI PDL +NPH  PSRMT+G +IE L  K     G+F+  + F + S
Sbjct: 966  MTYRQEDLPFTLVGISPDLTINPHCIPSRMTIGHLIECLSSKLASIKGQFNDATPFAQIS 1025

Query: 986  GHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1045
                 V  I+  L + G+   G +++ +  +G   Q  IF+GP YYQ+L+H+V DKM+AR
Sbjct: 1026 -----VNDIANKLHEVGWQKWGNEVMTNPYSGNMFQIPIFVGPTYYQRLRHLVDDKMYAR 1080

Query: 1046 GSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVC 1105
              GP   +TRQPT GR+R GGLR GEMERDC+I++G +  + ER    SD F V VC  C
Sbjct: 1081 SRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERTYDVSDAFRVHVCSKC 1140

Query: 1106 GLLGYYNHKLKAGICSTCKNG---DNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
            GL    N + +   C+ CKN    + I  + +PYA K LIQEL SMNI PRLK  ++
Sbjct: 1141 GLFAVANLENQEFYCNICKNTNQQNQIYQVLMPYAAKTLIQELISMNIAPRLKFDQS 1197


>gi|449674053|ref|XP_002157863.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like, partial
            [Hydra magnipapillata]
          Length = 494

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/538 (52%), Positives = 356/538 (66%), Gaps = 58/538 (10%)

Query: 574  GKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFL 633
            G I EFVS++ +   RCVYI+SDGGR+CRP +I  KG   + + H+ EL +G R+F+DFL
Sbjct: 1    GYINEFVSIYPSHSHRCVYISSDGGRMCRPYIIVKKGRPCVTQQHITELSNGTRTFEDFL 60

Query: 634  REGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
             +GLIEYLDVNE N++ IALYE   T DTTH+EIEPFT+LGV  GL+PYPHHNQSPRNTY
Sbjct: 61   HQGLIEYLDVNELNDSEIALYEEGCTKDTTHMEIEPFTLLGVCVGLVPYPHHNQSPRNTY 120

Query: 694  QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
            QCAMGKQAMG I +NQ  R+D+L+YLLVYP +P++ ++T++++ ++KL AGQNATVAVMS
Sbjct: 121  QCAMGKQAMGTIGYNQRNRIDTLMYLLVYPHQPMVKSKTLDIIQFEKLPAGQNATVAVMS 180

Query: 754  YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQV 813
            YSGYDIEDA+++NKSSLDR     I +         + N T DR++ P R     E   +
Sbjct: 181  YSGYDIEDALIINKSSLDRAMTHVIFL---------HENETFDRVMGPSRDAKTGEI--I 229

Query: 814  VHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR-YRSARQT 872
              H      +LD DG+   GE +    V +NK  P  T     +  GQ ++  Y+    +
Sbjct: 230  WKHK-----VLDTDGICRAGEQVLDKQVLVNKSMPTITNQLTQTTAGQLNTTDYKDVPTS 284

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
            Y GP      V++V + S       IK L+R TRRPE+GDKFSSRHGQKGVCG IV QED
Sbjct: 285  YHGPI--PSYVEKVLISSTMEDAFLIKMLMRQTRRPEIGDKFSSRHGQKGVCGLIVNQED 342

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             PF++ GICPD++                                   FG        V 
Sbjct: 343  MPFTDLGICPDIV----------------------------------TFG-----GSKVV 363

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
             + ETLV HGF+Y GKD + SGI G PL AYI+MGP+YYQKLKHMVLDKMHAR  GPR +
Sbjct: 364  DVCETLVNHGFNYAGKDFLTSGINGEPLSAYIYMGPVYYQKLKHMVLDKMHARAKGPRAV 423

Query: 1053 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
            LTRQPTEGR+R+GGLR+GEMERDCLI YGASMLI ERLM+SSD FE+ VC  CGL+GY
Sbjct: 424  LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLIVERLMISSDAFEIDVCSKCGLIGY 481


>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
            frontalis]
          Length = 915

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 329/938 (35%), Positives = 516/938 (55%), Gaps = 75/938 (7%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDK-------KGNINASVTSSTETVKSKTVIQMEKGKMYL- 233
            +EKVL+ QE+++ N + +              I ++V + +    +  +  + K      
Sbjct: 1    SEKVLIAQERMASNVIYVFAKSPPSPYSYTAEIRSAVETGSRHASTLYIKMLAKASARAN 60

Query: 234  --LLNQFVKK--------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEEC 280
              ++ Q +K         IPI++V +A+G+  D+++++ +     D +   +L P IE+ 
Sbjct: 61   SEIVGQSIKATLPYIRQDIPIVIVFRALGIVPDRDILEHICYDFNDTQMLEMLKPCIEDA 120

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
                I  +E AL+++ GK + +T G     R   A  IL+   L ++    +    K ++
Sbjct: 121  --FVIQDKEIALDFI-GK-RGTTVGVTKEKRMRYAAEILQKELLPHIGTKAHTETKKAYF 176

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
               M+ R++ A L +   DD+D+ G KRL+L+G L+  LF  LF+ + S+V K++   + 
Sbjct: 177  FGYMIHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTSDVSKSLQKCID 236

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK-RFKMHRKGMTQVLARLSFIGTLGH 459
               R+  F+L+  I  ++IT GL+ +L+TGN+  + +F   R G++QVL R +F  TL H
Sbjct: 237  ---RNREFNLNVAIRPNTITDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSH 293

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R++    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM++V+      P+
Sbjct: 294  LRRLNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPI 353

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            I       +E++E +    + N     V  NG+ +G HR P+     +R LRR   +   
Sbjct: 354  IEFLEEWSMENMEEVHVSHILNATKIFV--NGVWVGVHRDPEHLVKTLRDLRRGQNVNAE 411

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS-----FDDFLR 634
            +S+  + ++R + I +D GR+CRPL I +    ++K+ H+  + +   +     +DD + 
Sbjct: 412  ISIVRDIRERELRIYTDAGRICRPLFIVENQKLKLKKSHIALIQEKNETGEGWGWDDLIE 471

Query: 635  EGLIEYLDVNEENNALIALYEGDATP------------------------DTTHIEIEPF 670
             G+IE++D  EE   LI +   D  P                        + TH EI P 
Sbjct: 472  NGIIEFIDAEEEETTLICMSHEDLDPKDTEMDIQDYGISKRLKSRSVYSRNWTHCEIHPS 531

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILG+ A ++P+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL+TT
Sbjct: 532  MILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQLRMDTMANILYYPQKPLVTT 591

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            R +E + +  L AGQNA VA+  YSGY+ ED+I+MN+SS+DRG  R +  + Y    +K 
Sbjct: 592  RAMEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRSLFYRSYMDQEKKV 651

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
                 +   +P R     E    + H       L+DDGL APG  +  +D+ I K  PL 
Sbjct: 652  GMFNVENFEKPTR-----ETCLRLRHGTYEK--LEDDGLIAPGIRVTGDDIIIGKTIPLS 704

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                 +   GQ    +     +      ET +VDRV + ++++G   +K  +R TR P++
Sbjct: 705  QDSEEL---GQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMRFVKVRVRSTRIPQM 761

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKG  G   + ED PF+  GI PD+I+NPH  PSRMT+G ++E L GK   
Sbjct: 762  GDKFASRHGQKGTVGMTYRTEDMPFTVNGITPDIIINPHAIPSRMTIGHLVECLLGKVST 821

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G     + F +      TVE+IS+ L ++G+   G +++++G TG  LQA IF+GP Y
Sbjct: 822  LTGDEGDATPFTDV-----TVEAISKLLRENGYQSRGFEVMFNGHTGKKLQAQIFLGPTY 876

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            YQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 877  YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 914


>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 733

 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 314/728 (43%), Positives = 430/728 (59%), Gaps = 36/728 (4%)

Query: 444  MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKN 503
            ++QVL RL++  TL H+ R++    +  K++ PR L  SQWGM+CP +TPEG+ACGLVKN
Sbjct: 11   VSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKN 70

Query: 504  LALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCF 563
            LALM ++T      P++      G E+ E +S   +  P +  +  NG  +G HR P   
Sbjct: 71   LALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQATKIFVNGCWVGIHRDPDML 128

Query: 564  ADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL 623
               +R+LRR   +   V V  + + + + I +D GR  RPL I +     IK+  ++ L 
Sbjct: 129  VKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVENQRLLIKKRDIQALQ 188

Query: 624  ------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD----------ATPDT-THIE 666
                  DG   + D + +G IEY+D  EE   +I++   D          A  DT TH E
Sbjct: 189  QRESPEDG--GWHDLVSKGYIEYIDTEEEETTMISMTINDLVSARANKKEAYSDTYTHCE 246

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L YPQ+P
Sbjct: 247  IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKP 306

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R +  + Y   
Sbjct: 307  LVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE 366

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +K      +   RPDR+      M + H S      LDDDGLA PG  +   DV I K 
Sbjct: 367  EKKMGTLVKEDFGRPDRSNT----MGMRHGS---YDKLDDDGLAPPGTRVSGEDVIIGKT 419

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P+    +     G   +RY     +      ET +VD+V L ++ +G   +K  +R  R
Sbjct: 420  TPIAPDEATQ---GGPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 476

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             P++GDKFSSRHGQKG  G    QED P++  GICPD+I+NPH  PSRMT+G++IE + G
Sbjct: 477  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMG 536

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     G+    + F +      TV++IS+ L K G+   G + +Y+G TG  L A IF+
Sbjct: 537  KVAAXMGKEGDATPFTDV-----TVDNISKALHKCGYQMRGFETMYNGHTGRRLPAXIFL 591

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            GP YYQ+LKHMV DK+H+RG GP  +LTRQP EGR+R+GGLR GEMERDC+IA+GA+  +
Sbjct: 592  GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFL 651

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERL   SD + V VC  CGL+   N K  +  C  CKN  +I  + +PYACKLL QEL 
Sbjct: 652  KERLFDQSDAYRVHVCERCGLVAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM 711

Query: 1147 SMNIVPRL 1154
            SM I PR+
Sbjct: 712  SMAIAPRM 719


>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
            frontalis]
          Length = 915

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 328/938 (34%), Positives = 517/938 (55%), Gaps = 75/938 (7%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDK-------KGNINASVTSSTETVKSKTVIQMEKGKMYL- 233
            +EKVL+ QE+++ N + +              I ++V S +    +  +  + K      
Sbjct: 1    SEKVLIAQERMASNIIYVFAKTPPSPYSYTAEIRSAVESGSRHASTLYIKMLAKASTRAN 60

Query: 234  --LLNQFVKK--------IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEEC 280
              ++ Q +K         IPI++V +A+G+  D+++++ +    RD +   +L P IE+ 
Sbjct: 61   SEIVGQSIKATLPYVRQDIPIVIVFRALGVVPDRDILEHICYDFRDYQMLEMLKPCIEDA 120

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
                I  +E AL+++ GK + +T G     R   A  IL+   L ++    +    K ++
Sbjct: 121  --FVIQDKEIALDFI-GK-RGTTVGVTKEKRIRYAAEILQKELLPHIGTRAHTETKKAYF 176

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
               M+ R++ A L +   DD+D+ G KRL+L+G L+  LF  LF+ +  +V KT+ + + 
Sbjct: 177  FGYMIHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTKDVSKTLQMCID 236

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK-RFKMHRKGMTQVLARLSFIGTLGH 459
               R+  F+L+  I  ++I+ GL+ +L+TGN+  + +F   R G++QVL R +F  TL H
Sbjct: 237  ---RNREFNLNSAIRPNTISDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSH 293

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R++    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM++V+      P+
Sbjct: 294  LRRLNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPI 353

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            +       +E++E +    + +     V  NG+ +G HR P      +R LRR+  +   
Sbjct: 354  VEFLEEWTMENMEEVHVSHIIDATKIFV--NGVWVGIHRDPDHLVKTLRDLRRSQNVNAE 411

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS-----FDDFLR 634
            +S+  + +++ + I +D GR+CRPL I +    ++K+ H+  + +   +     +DD + 
Sbjct: 412  ISIVRDIREKELKIYTDAGRICRPLFIVENQKLKLKKSHIAMIQERNETGQGWGWDDLIE 471

Query: 635  EGLIEYLDVNEENNALIALYEGDATP------------------------DTTHIEIEPF 670
             G+IE++D  EE   LI +   D  P                        + TH EI P 
Sbjct: 472  NGIIEFIDAEEEETTLICMSHEDLDPKDGEMNIQDYGTSKRLKSRSVYSRNWTHCEIHPS 531

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILG+ A ++P+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L YPQ+PL+TT
Sbjct: 532  MILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQLRMDTMANILYYPQKPLVTT 591

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            R +E + +  L AGQNA VA+  YSGY+ ED+I+MN+SS+DRG  R +  + Y    +K 
Sbjct: 592  RAMEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFRSLFYRSYMDQEKKV 651

Query: 791  ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLE 850
                 +   +P R     E    + H       L+DDGL APG  +  +D+ I K  PL 
Sbjct: 652  GMFNVENFEKPTR-----ETCLRLRHGTYEK--LEDDGLIAPGIRVTGDDIIIGKTIPLS 704

Query: 851  TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 910
                 +   GQ    +     +      ET +VDRV + ++++G   +K  +R TR P++
Sbjct: 705  QDSQEL---GQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMKFVKVRVRSTRIPQM 761

Query: 911  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 970
            GDKF+SRHGQKG  G   + ED PF+  GI PD+I+NPH  PSRMT+G ++E L GK   
Sbjct: 762  GDKFASRHGQKGTVGMTYRTEDMPFTFNGITPDIIINPHAIPSRMTIGHLVECLLGKVST 821

Query: 971  SCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIY 1030
              G     + F +      TVE+IS+ L ++GF   G +++++G TG  LQA IF+GP Y
Sbjct: 822  LTGDEGDATPFTDV-----TVEAISKLLRENGFQSRGFEVMFNGHTGKKLQAQIFLGPTY 876

Query: 1031 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            YQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 877  YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 914


>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
            pachyodon]
          Length = 901

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 323/864 (37%), Positives = 490/864 (56%), Gaps = 63/864 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +    +D +   +L P I++     I  +E AL+++  +
Sbjct: 63   IPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDD--GFVIQDREVALDFIGNR 120

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L ++ +   +   K ++   M+ R++ A L +  +
Sbjct: 121  --GTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERREL 178

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+LS  +  ++
Sbjct: 179  DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLSLAVKHNT 235

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 236  ITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 295

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L    WGM+CP +TPEG+ACGLVKNL+LM+ ++     GP+I      G+E LE    E
Sbjct: 296  QLHNHHWGMVCPAETPEGQACGLVKNLSLMSCISVGSFSGPVIEFLEEWGLESLE----E 351

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
             +H+P     +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + I +D
Sbjct: 352  NVHSPTPTTKVFVNGVWMGVHRDPVNLVKTIKKLRRKDDISPEVSVVRDTRERELRIYTD 411

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRSF--DDFLREGLIEYLDVNEENNALIALY 654
             GRVCRPL I +     IK+ H++ L D   +F  DD +++G+IE LD  EE  A+I + 
Sbjct: 412  AGRVCRPLFIVEDEQLAIKKKHIRMLEDKDSNFAWDDMIKKGIIELLDAEEEETAMICMT 471

Query: 655  ------------------------------EGDATPDTTHIEIEPFTILGVIAGLIPYPH 684
                                           G +    TH EI P  ILGV A +IP+P 
Sbjct: 472  PEDLEASRLAGAGMDQEDESEFDPSKRLRTTGSSIHTWTHCEIHPSMILGVCASIIPFPD 531

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L AG
Sbjct: 532  HNQSPRNTYQSAMGKQAMGIYLTNFLSRMDTMANILYYPQKPLATTRSMEYLKFRELPAG 591

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +P R 
Sbjct: 592  QNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKPTRD 651

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 RM+   +       L+DDGL APG  +   D+ I K +P+      +    +T +
Sbjct: 652  --TTLRMKHGTYDK-----LEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHT 704

Query: 865  RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVC 924
            R R      K    E+ +VD+V + ++  G   +K  +R TR P++G KF+SRHGQKG  
Sbjct: 705  R-RDVSTPLKST--ESGIVDQVLITTNAEGQKFVKIGVRSTRVPQIGGKFASRHGQKGTI 761

Query: 925  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 984
            G   +QED PF+  GI PD+++NPH  PSRMT+G ++E L  K     G+    + F E 
Sbjct: 762  GITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKLATLTGQEGDATPFTEL 821

Query: 985  SGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHA 1044
                 TVES+S+ L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK+H+
Sbjct: 822  -----TVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHS 876

Query: 1045 RGSGPRVMLTRQPTEGRARNGGLR 1068
            R  GP  +LTRQP EGR+R+GGLR
Sbjct: 877  RARGPVQILTRQPVEGRSRDGGLR 900


>gi|161899447|ref|XP_001712950.1| RBP2 DNA-directed RNA polymerase II second largest subunit
            [Bigelowiella natans]
 gi|75756444|gb|ABA27338.1| RBP2 DNA-directed RNA polymerase II second largest subunit
            [Bigelowiella natans]
          Length = 1159

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 380/1185 (32%), Positives = 593/1185 (50%), Gaps = 100/1185 (8%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------------RANDRIVSGI----- 74
             QLL  F +   ++KQ + SFN F+    + I+            + +++IV+ I     
Sbjct: 10   LQLLTTFFRGNSIIKQQIISFNDFIRKESQHIIDKIPNLVIQISYKNSNKIVNRILLLKQ 69

Query: 75   ----DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHT 129
                 P I    +   + +PS   D     ++P+  RL ++TY++ + + + + +   H 
Sbjct: 70   LYTEKPRIIKTRELYNLVEPSY--DEGELNISPNKSRLRNITYSSKVRIQVFDEITDKHD 127

Query: 130  EKTTMEKND-----VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
                 +  +     + IG+ P M++S  C L    E  LAR  ECP D GGYFII G EK
Sbjct: 128  ANLKKKVVNKSKKFIYIGKFPCMIKSDTCYLNNFSEISLARNDECPFDEGGYFIINGNEK 187

Query: 185  VLLIQEQLSKNRVIIDT---DKKGNINASVTSSTETVKSKTVIQMEK------------G 229
            VL+ QE+L KN+V I +   DKK  + A   S   ++ ++  +   K             
Sbjct: 188  VLVAQERLVKNKVYIFSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKLVTDKSNNPNQCS 247

Query: 230  KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANL-DIYTQ 288
            ++ + +     +IP+++++K +G ++D+E++  + ++   S  L         +  + T 
Sbjct: 248  EITVKIASLRAEIPLVILLKFLGFKNDKEIINSIFKNNSNSKKLNMLYNSFLGVTKVQTI 307

Query: 289  EKALEYLEGKVKRSTFGSPPN---DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              AL Y+   V RS F    N   D E  A  I+    L ++    N+   K  ++  M 
Sbjct: 308  SHALRYI---VDRS-FSKSNNKKLDPEKTAREIIDKKLLPHMGTSINSRFRKGLFICYMA 363

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++  +   +  DDKD   NKR+++SG L S LF +L K  I +V+     +L K  +S
Sbjct: 364  HRLINTLNEIEQPDDKDSYKNKRVDISGHLFSSLFNNLIKRSIKDVKNQ---LLKKVKKS 420

Query: 406  SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
               +L +    + +T G   +L+TGN+ +     ++ G++QVL R+S++  + H++R++ 
Sbjct: 421  DATELEELFSSNILTNGFRYSLATGNWIIDGMLDYKTGVSQVLNRMSYLSMISHLSRLNS 480

Query: 466  QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE-EGPLISLCY 524
             +  + K+   R +  S WG++CP +TPEG+ CG+VKN A + HVT     +  +I    
Sbjct: 481  SYTSNGKILDIRRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVTNSHHIQKNIIQFLK 540

Query: 525  CLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
             + +++       +       + IF NG  +G           +  LRR   I   VS+ 
Sbjct: 541  KIMIKNSFTKPMIKTKKDKPDISIFVNGSWIGNTFEYFSLMKYLITLRRQEIIPFDVSIV 600

Query: 584  VNEKQRCVYIASDGGRVCRPLVIADKGISRIK---EHHMKELLDGVRSFDDFLREGLIEY 640
             NEK + ++I SD GR+ RPL +     S      E   K++ D    +  +++  ++EY
Sbjct: 601  FNEKNKRIFIWSDPGRIKRPLFVLKNSNSFFNHSIEKIAKKIKDNFHRWYFYIKNSIVEY 660

Query: 641  LDVNEENNALIALYEGDATP---DTTHI--------EIEPFTILGVIAGLIPYPHHNQSP 689
            LD  E  N +I L   + T    D T I        EI   +ILGV A  +P+  HNQSP
Sbjct: 661  LDTEEIENIVIKLNYYNNTELIVDQTQIYKKMINFSEIHASSILGVSASQVPFSQHNQSP 720

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ +MGKQA+G    N   R D+ + +L   QRPL+ T     +   ++ +G N  +
Sbjct: 721  RNTYQSSMGKQAIGINYSNFQLRYDTQINILESNQRPLVFTIQKLCLRGQEMPSGINTIM 780

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            A++SYSG++ ED++++N SS++RG  R I+ K +        N   ++I    ++     
Sbjct: 781  AILSYSGFNQEDSLIINHSSVERGLFRTIIYKTFAERENTNVNGIIEKIELESKS----- 835

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
                   SNL  L  D DG      ++  +DV I+K   L         TG+ D++  + 
Sbjct: 836  -------SNLFGL--DIDGTRKIETLVNGDDVLISKTIKL---------TGKGDTKVNTI 877

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
                K P     VVD +    D+ G   IK  IR  R P +GDKFSS HGQKG+ G   +
Sbjct: 878  HSDLKLPLNSQGVVDSIMYSLDEGGYKIIKVRIRSIREPVIGDKFSSLHGQKGIIGYSYR 937

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
            Q   P +   + PDLIMNPH  PSRMT+G MIE+L  K     G+    +AF E +    
Sbjct: 938  QSLLPTTATSVTPDLIMNPHAIPSRMTIGHMIEMLMSKVSSHSGKLGDATAFSEGN---- 993

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
             +  I   L K G  + G + + SG  G  LQ  I +GPIYYQ+LKHMV+DK  +R  GP
Sbjct: 994  -IGKIIGHLSKFGIHHFGLEKMISGFNGDILQKSILVGPIYYQRLKHMVVDKFFSRSRGP 1052

Query: 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLG 1109
              +LTRQP EG+ R GGLR GEMERDC++++G+S+ + ERLM  SD F V +C   GL  
Sbjct: 1053 YEILTRQPVEGKTREGGLRFGEMERDCVLSHGSSLFLKERLMDESDKFRVHICEKSGLFC 1112

Query: 1110 YYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              N K +    ST  +  +I  + +PYACKLL QEL +M I PRL
Sbjct: 1113 PANLKTQT-FWSTIYHSKSICQIFIPYACKLLFQELIAMCIAPRL 1156


>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
          Length = 952

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/979 (34%), Positives = 518/979 (52%), Gaps = 104/979 (10%)

Query: 174  GGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK---------GNINASVTSSTETVKSKTVI 224
            GGYFII G+EKVL+ QE+ + N  I+   KK           I +++   +  + S  + 
Sbjct: 1    GGYFIINGSEKVLIAQERSAAN--IVQVFKKPANSAVSYLAEIRSALEKGSRLISSLQIK 58

Query: 225  QMEKG---------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSAL 272
              +KG          +   L      IPI +V +A+G+ SD++++  +     D +   +
Sbjct: 59   LYDKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEM 118

Query: 273  LLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDVFLANVPVHN 331
            L P IEE     I  +E AL+++    KR    S   D+  + A  I++   L ++    
Sbjct: 119  LKPCIEEA--FVIQDREVALDFIG---KRGNGTSLTRDKRIKYARDIMQKELLPHISQKE 173

Query: 332  NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
             +   K F++  M+ ++++  L +   DD+D+ G KRL+L+G L++ LF +LF+ + ++V
Sbjct: 174  GSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDV 233

Query: 392  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLAR 450
             + +   +     +  F+L+  +   +IT GL+ +L+TGN+ D K+      G++QVL R
Sbjct: 234  YRYLQRCVEN---NREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNR 290

Query: 451  LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
             +F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM +V
Sbjct: 291  YTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYV 350

Query: 511  TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
            T      P++       +E LE    E L  PN+  V  NG+ +G HR P      ++ L
Sbjct: 351  TVGTPSDPIVEFMIQRNMEVLE--EYEPLRAPNATKVFVNGVWVGIHRDPAHLVKCVQDL 408

Query: 571  RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI-------ADKGISRIKEHHMKELL 623
            RR+  I   VS+    + R   I +D GRVCRPL++       A+KG   + + H++ L 
Sbjct: 409  RRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNKDHIRRLE 468

Query: 624  D----------------GVRSFDDFLREGLIEYLDVNEENNALIALYEGDAT-------- 659
            D                G   F   + +G++EYLD  EE   +I +   D          
Sbjct: 469  DDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQLQAG 528

Query: 660  ----PD-------------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA 696
                PD                    TH EI P  ILG+ A +IP+P HNQSPRN YQ A
Sbjct: 529  YQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSA 588

Query: 697  MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
            MGKQAMG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+M YSG
Sbjct: 589  MGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIMCYSG 648

Query: 757  YDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHH 816
            Y+ ED+++MN+SS+DRG  R +  + YT   ++   +  ++  +P R+     +      
Sbjct: 649  YNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYDK 708

Query: 817  SNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP 876
                   LDDDG+ APG  +   D+ I K +P+      M   GQ    +     +    
Sbjct: 709  -------LDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEM---GQRTKAHVKRDASTPLR 758

Query: 877  DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
              E+ +VD+V + ++  G   +K  +R T+ P++GDKF+SRHGQKG  G    Q+D PF+
Sbjct: 759  STESGLVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFT 818

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
              G+ PDLI+NPH  PSRMT+  +IE    K     G     + F E      TV+S+S+
Sbjct: 819  REGVVPDLIINPHAIPSRMTIAHLIECQLSKVSTLRGLEGDATPFTEV-----TVDSVSK 873

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L  HG+   G +++Y G TG  + A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQ
Sbjct: 874  LLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQ 933

Query: 1057 PTEGRARNGGLRVGEMERD 1075
            P EGRAR+GGLR GEMERD
Sbjct: 934  PVEGRARDGGLRFGEMERD 952


>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1214

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 386/1210 (31%), Positives = 628/1210 (51%), Gaps = 113/1210 (9%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRAND-RIVSGIDPSI---------- 78
            D +++L  F +  GLV Q + S+  FV   I K VR ++   V  + P            
Sbjct: 32   DIWKVLQMFFQTHGLVSQQIGSYESFVENVI-KFVRGHEGTFVVRVKPQYKEEERQEAYL 90

Query: 79   --FLRFKDVR--IGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV-------QGS 127
                +F+  R  +G+ ++ VD   E++ P + RL D+TY+  + +++E          G+
Sbjct: 91   EYLYQFQITRCFMGKKNIHVDKFEEEIFPMIARLRDLTYSRQLKIDLEVTMQQRNKRDGT 150

Query: 128  HTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD--EAELARL----GECPLDPGGYFIIKG 181
              EK+  +   +   ++PIM+RS  C L  KD  +AEL +L    GEC  D GGYFI++G
Sbjct: 151  IEEKSKQQFKGLPFFKLPIMVRSRFCSLQ-KDPKDAELIQLRIQNGECGFDQGGYFILRG 209

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGN--INASVTSSTETVKSKTVIQME------KGKMYL 233
            +EKV++ QE+++ N V++   K  N    A + S  +   +  V ++E         +  
Sbjct: 210  SEKVIVAQERIANNVVLVFKSKIVNKPWVAEIRSQPDLFSNPNVFKVELRYIQNTPVIRC 269

Query: 234  LLNQF--VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS------ALLLPSIEECANLDI 285
             + QF   + IP+  + +A+G+ SDQE+++ +  +           +L  S++E    + 
Sbjct: 270  SVKQFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDEFMGPMLEMLYGSLQEGGEYE- 328

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E  L ++  K+K++     P      A  ++    L ++ V   +   K +++  ++
Sbjct: 329  -DEELCLRWIGNKIKKAE-NQDPETLIQEAKKLINKNILPHIGVSTESRDRKAYFLGYIV 386

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L K   DD+D+ G KRL+++G ++  +F+  F+      +K ++  ++   R 
Sbjct: 387  HRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFEQFKQNSKKALEKYINGGRRG 446

Query: 406  -----------SRFDLSQFIVRDSITVGLERTLSTGNFD-VKRFKMHRKGMTQVLAR-LS 452
                          D+  F   + I+  ++  L+TGN+   K  ++ + G+ Q L R  S
Sbjct: 447  RGQQTKIENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKTGVAQTLKRETS 506

Query: 453  FIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 512
               TL H+ R++       K+S PR L  + +G +CP +TPEG+  G+VKNL+LMT V+ 
Sbjct: 507  LFATLSHLRRMNAPINPQMKLSKPRQLHNTHFGFICPAETPEGQKIGIVKNLSLMTTVSN 566

Query: 513  D---EEEGPLISLCYCLGVEDLE--LLSGEELHN--PNSFLVIFNGLILGKHRRPKCFAD 565
            D   +++  L+ L       D +  LL G+      P    V+ +G  +G  R P+ F  
Sbjct: 567  DLQSKDKETLLKLIMVSQQNDFDFILLQGDFQAQDIPRMTKVLVDGNWIGFTRNPEQFIH 626

Query: 566  VMRKLRRAGK--IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELL 623
              + LR A +  I   VS+  +   + + I +D GR  RPL I      ++    MK +L
Sbjct: 627  EFKNLRSAEESYIPIEVSINFDYVNKEIRIYTDAGRCMRPLFIVQNNKLKL----MKGVL 682

Query: 624  DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------THIEIEPFTILGVIA 677
            + +  +++ L+   +E LDV EE  +LIA+        T      TH EI P  + GV A
Sbjct: 683  NQINDWEELLKNKCVELLDVEEEEGSLIAMDIDIMMRGTQNFKRYTHCEIHPCMMFGVCA 742

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+ +HNQ PRNT Q AMGKQAMG  + N   R D+L+++L YPQ+PL ++R ++ + 
Sbjct: 743  SVIPFANHNQGPRNTLQSAMGKQAMGLNSTNFNIRFDTLVHILHYPQKPLASSRAVDFIT 802

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA-NSTSD 796
             +++  G N   ++  ++GY+ ED+I++N+ ++DRGF R +  + Y     K   N T  
Sbjct: 803  VNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGFFRSVFYRTYKESEDKDPDNFTET 862

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
            +I +P       +          L + LD DG+  PG  +   +  I KE  ++   +IM
Sbjct: 863  KITKPIGDNFAGK----------LFIKLDSDGIVPPGTKVDEEEPIIGKELIID---NIM 909

Query: 857  --SPTGQTDSRYRS--ARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 912
              +  GQ +++  S   R+  +G      VVD V +  ++ G   +K  +R  R P++GD
Sbjct: 910  LNTANGQKNTKECSLLTRRAERG------VVDSVLISENQKGYKLVKVKVRSLRIPQIGD 963

Query: 913  KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 972
            KF SRHGQKG CG   +QED P++  GI PDL +NPH  PSRMT+G +IE L  K     
Sbjct: 964  KFCSRHGQKGTCGMTYRQEDLPYTLVGISPDLTINPHCIPSRMTIGHLIECLSSKLASIK 1023

Query: 973  GRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQ 1032
            G+F+  + F +       V  I+  L K G+   G +++ +  TG      IF+GP YYQ
Sbjct: 1024 GQFNDATPFAQI-----LVNDIANELHKVGWQKWGNEVMTNPYTGNMFSIPIFVGPTYYQ 1078

Query: 1033 KLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMV 1092
            +L+H+V DKM+AR  GP   +TRQPT GR+R GGLR GEMERDC+I++G +  + ER   
Sbjct: 1079 RLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERTYD 1138

Query: 1093 SSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDN---ISSMKLPYACKLLIQELQSMN 1149
             SD F V VC  CG+    N + +   C+ CKN +N   I  +++PYA K LIQEL SMN
Sbjct: 1139 VSDAFRVHVCSKCGMFAVANLENQEFYCNLCKNQNNQNKIYQVQMPYAAKTLIQELISMN 1198

Query: 1150 IVPRLKLAEA 1159
            I PRLK  ++
Sbjct: 1199 IAPRLKFDQS 1208


>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
            brevicollis]
          Length = 904

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 331/932 (35%), Positives = 524/932 (56%), Gaps = 74/932 (7%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVK------SKTVIQMEKGK----- 230
            +EKVL+ QE+++ N V +  +KK + +  VT     V+      S  +++M +G      
Sbjct: 1    SEKVLIAQEKMAGNTVYV-FEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTK 59

Query: 231  --------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEE 279
                    ++  L    + IP++V+ +A+G E D+ +++ +     D     LL PS++E
Sbjct: 60   GRATFGRVIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDE 119

Query: 280  CANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCF 339
                 + T+E AL+ L G+   +  G   + R   A  IL+   L ++ V     + K F
Sbjct: 120  A--FVVQTREVALD-LIGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAF 176

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV-QKTVDII 398
            ++  M+ R ++A L +  +DD+D+ GNKRL+L+G LV+ LF  LFK +  ++ +K  D++
Sbjct: 177  FLGYMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLV 236

Query: 399  LSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTL 457
                +R+ +F +   +  + +  GL  +L+TGN+ D K+    R G++QVL RL+F  TL
Sbjct: 237  ----NRNHKFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTL 292

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
             H+ R++   +++ K++ PR L  + WG +CP +TPEG A GLVKNL+LM  +T   ++ 
Sbjct: 293  SHLRRLNSPIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDT 352

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIG 577
            P+  L    G++ L+ L         +  V  NG  +G H  P      MR++RRA  + 
Sbjct: 353  PVHDLLGASGLDYLDRLPSRSAIK-TATKVFVNGNWVGIHSHPDELVTTMRQMRRAHSVA 411

Query: 578  EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR-----IKEHHMKELLDGVRSFDDF 632
              VS+F N ++R V+I +D GR  RPL+I +K  +      +K  H+  L +   S+   
Sbjct: 412  SEVSIFRNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRNDQMSWTHL 471

Query: 633  LREGLIEYLDVNEENNALIALYEGD-----ATPDT---------THIEIEPFTILGVIAG 678
            ++ G++EY+DVNEE   +IA+Y  D     A PD+         TH EI P  IL + A 
Sbjct: 472  VQRGVVEYIDVNEEETTMIAMYGHDPLALLALPDSNTTSYCNTYTHCEIHPSMILSICAS 531

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L ++L YPQRPL+ TR++  + +
Sbjct: 532  IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMNYLRF 591

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
             +L AG NA V +M+Y+GY+ ED+++MN+ S++RG  R +  + Y A      +S    I
Sbjct: 592  AELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAASE----HSERGEI 647

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINK--ESPLETRGSIM 856
            ++ D+  P  E    +  +N     L+DDG+ APG  +  +D  + +  E P  TR +  
Sbjct: 648  IKIDK--PSRENCIGMRRANYDK--LEDDGIVAPGIRVSGDDAIVGRLLELPEATRQA-- 701

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
                 +  R+    ++      E+ ++D V +  ++ G+  +K  +R  R P++GDKF+S
Sbjct: 702  -----SGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFAS 756

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG CG    QED PF+  G+ PD+I+NPH  PSRMT+G +IE L GK+    G   
Sbjct: 757  RHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASHSGTIG 816

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F + +     V  +++ L  + F   G +++Y+G TG  +QA +F+GP YYQ+LKH
Sbjct: 817  DATPFTKVN-----VTDVADILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKH 871

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            MV DK+HAR  GP   LTRQP EGR+R+GGLR
Sbjct: 872  MVDDKIHARARGPLQNLTRQPMEGRSRDGGLR 903


>gi|340500807|gb|EGR27654.1| RNA polymerase ii second largest subunit, putative [Ichthyophthirius
            multifiliis]
          Length = 1194

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 368/1118 (32%), Positives = 582/1118 (52%), Gaps = 74/1118 (6%)

Query: 98   SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTM---------EKNDVVIGRIPIML 148
            ++++ P   R+SD+ Y+  I + I+ V+ +   +T            KN + +  IP M+
Sbjct: 90   NQRIFPTQARISDLDYSLEIKIPIKLVKETFNPETGKLDVKNLVDPNKNVITLAHIPAMV 149

Query: 149  RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN 208
            +S +C L+G    +  + GEC  D GGYFIIKG EKV++ QE+++ N + +       I 
Sbjct: 150  QSKQCSLHGLSLQQRIQTGECKHDQGGYFIIKGQEKVIIAQERMAYNFIYVFKQNDDRIP 209

Query: 209  A-----SVTSSTETVKSKTVIQMEKG----KMYLLLNQFVKKIPIMVVMKAMGMESDQEV 259
                  S+      ++SK +I+M+K     +++         IP+ ++ KA+ +  D+++
Sbjct: 210  WIAEIRSICGKITGIQSKFIIKMKKKNEEIQLFWRSKYISDDIPMFILFKALNIIKDRQI 269

Query: 260  VQMVGRDPRYSA------LLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
            ++ +  D +         LL  S+  C+   + +   AL Y+  +V  S+      D   
Sbjct: 270  MEYIFHDIKSRENQTQMELLRDSLLLCSK--VKSVNSALNYIGLRVLASSKNIGKQDAVK 327

Query: 314  RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
             A +IL    L ++     +   K F+V  M+++++ A  NK   DD+D+ G KR+++SG
Sbjct: 328  AAKNILNYYLLPHIGQDEKSLHQKAFFVGYMIKKLLNAANNKCIEDDRDHYGKKRMDISG 387

Query: 374  QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR--FDLSQFIVRDSI-TVGLERTLSTG 430
             L+S LF++     I   +  +    SK  R S   F L   I    I +  L+  ++TG
Sbjct: 388  NLLSQLFKERVSQFIKRGKMMLQEKFSKIFRDSNACFSLKNDIFDHKIISDALKAAIATG 447

Query: 431  NFDVKR-FKMHRKGMTQVLAR-LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
            N+ V    ++ R G++Q L R   F  TL +M RV+    +  K + PR L  S +GM+C
Sbjct: 448  NWGVTADGEVARTGVSQQLKRDTCFFATLSNMRRVTAPQRQISKQTKPRQLHNSHYGMIC 507

Query: 489  PCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNS 544
            P +TPEG+  G++KN+A MT V+   +E   + +   L     V D+  ++ EE+   N 
Sbjct: 508  PAETPEGQNIGMIKNMAFMTQVSLGLQERDNLQILEFLESAVQVFDITQINVEEIAGMNK 567

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
              V FNG   G  + P+   ++ +K RR  +  + +SV  +   + + I +D GR  RPL
Sbjct: 568  --VFFNGNWFGFCKDPEDLIELFKKYRRKKQEFKDISVVRDVINKEIRIYTDSGRCMRPL 625

Query: 605  VIADKGISR---IKEHHMKELLDGV--RSFDDFLREGLIEYLDVNEENNALIALYEGDAT 659
             + +   +R   I + ++K +   V  + F ++   G IEYLDV EE  ++I +   D  
Sbjct: 626  FVVENARNRKLFINKENLKLINKNVQEKRFSNYCLNGFIEYLDVEEEEISMIGIDINDFY 685

Query: 660  --PDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
              P +      TH EI P  ILGV A +IP+ HHNQ PRNT Q AMGKQ++G  A N   
Sbjct: 686  FPPKSRQNLPFTHCEIHPSMILGVCASIIPFCHHNQGPRNTLQSAMGKQSIGLNATNFFF 745

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            R DSL ++L YPQ PL  +R+       ++  G NA VA+  ++G++ ED++++N+S++D
Sbjct: 746  RYDSLAHVLYYPQVPLTFSRSNYYNSSVEMPFGINAIVAIACFTGFNQEDSLIVNQSAID 805

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG---PGAERMQVVHHSNLLLLILDDDG 828
            RG  R    + Y     K A    +   +P R     P  ++  +  HS+ L L  D DG
Sbjct: 806  RGLFRSSFYRTY-----KTAQRNEEMGKQPIRETICIPDYKKTFIQQHSSFLKL--DYDG 858

Query: 829  LAAPGEIIKPNDVYINKE-SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            +  PG  +   DV + K    +E  G  +    Q    Y+      K    E   VD V 
Sbjct: 859  IIPPGTQVISQDVLVGKVVQIIEKEGQDIDKIEQLQKEYKDISLVSK--RSEIGYVDNVI 916

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            L  DK+G   +K  IR +R P++GDKF+SRHGQKG  G  ++ ED PF+  GI  +LI+N
Sbjct: 917  LTEDKDGFYLVKVKIRCSRIPQVGDKFASRHGQKGTVGMTIRGEDMPFNIEGIQAELIIN 976

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+G MIE L  K     G F   + F E +      E  ++ L + G+   G
Sbjct: 977  PHCIPSRMTIGHMIEGLHSKLACLKGGFGDATPFQEGN-----FEKTAKELQEKGYQKYG 1031

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y   TG  +   I+  P YYQ+L+H+V DKM+AR  GP V +TRQPT GR + GGL
Sbjct: 1032 NEILYDPYTGNKINTPIYFSPTYYQRLRHLVEDKMYARSRGPVVAITRQPTHGRGKGGGL 1091

Query: 1068 RVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC---- 1123
            R GEMERDC+I++G S  + ER    SD + V +C  CGL+   + + +  +C  C    
Sbjct: 1092 RFGEMERDCIISHGTSKFLQERTFSVSDSYRVHICSECGLIAVADLENEYYVCKRCLDLD 1151

Query: 1124 --KNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1159
              K+   I  + +PYA K +IQEL SM+IVPR+++ ++
Sbjct: 1152 KKKDKAKIVQIMMPYAAKQMIQELISMHIVPRIRVQKS 1189


>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
            culisetae]
 gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
          Length = 899

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 323/868 (37%), Positives = 490/868 (56%), Gaps = 67/868 (7%)

Query: 241  KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEG 297
            ++P++VV +A+G  + +++++ +  D   S ++     SIEE     I  +E +L+++ G
Sbjct: 58   EVPVVVVFRALGTVAAKDILEHICYDSNDSEMVEEFKASIEEA--FVIQDREVSLDFI-G 114

Query: 298  KVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDA 357
            K + +T G     R   A  IL+  FL +V    +N   K +++  M+ R+++ +L +  
Sbjct: 115  K-RGTTVGVNREKRIKYAREILQKEFLPHVGTQPHNETRKTYFLGYMVHRLLQCVLERRD 173

Query: 358  MDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVR 416
             DD+D+ G KRL+L+G L+++LF +LFK M  ++ +     L K   S R F+LS  +  
Sbjct: 174  QDDRDHYGRKRLDLAGPLLAMLFRNLFKKMTRDMTR----YLQKCIESRREFNLSMALKS 229

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
            ++IT GL+ +L+TGN+ D K+    R G+ QVL R +F  TL H+ R +    +  K++ 
Sbjct: 230  NTITAGLKYSLATGNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGRDGKIAK 289

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  + WG++CP +TPEG+ACGLVKNLALM H+T   + G ++       +E+LE L 
Sbjct: 290  PRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEEWAMENLEELV 349

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
            G+ L +     V  NG+ +G H+     A  +++LRR  +    +S+  + ++R + I +
Sbjct: 350  GDSLADSTKIFV--NGVWVGIHKEAVRLAATLKQLRRRLEFSYELSIVHDVREREIRILT 407

Query: 596  DGGRVCRPLVIADKG--------ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEEN 647
            D GRVCRPL + +          ++ I+   + E  D VR + D L EG++EYLD  EE 
Sbjct: 408  DAGRVCRPLFVVNHMRLALTKPVVAAIEARRLGER-DAVR-WHDLLSEGIVEYLDAEEEE 465

Query: 648  NALIAL------------YEGDATPD---------------TTHIEIEPFTILGVIAGLI 680
             A+I +            + G   P                 TH EI P  ILG+ A ++
Sbjct: 466  TAMIVMSPHELDESRRFVHTGQLPPKDDGRIRSRRNIGITTWTHCEIHPSMILGICASIV 525

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG +  N   RMD+L  LL YPQ+PL TT  +E + + +
Sbjct: 526  PFPDHNQSPRNTYQSAMGKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAMEYIKFSE 585

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA++ Y+GY+ ED+++MN+SS+DRG  R I  + Y     K    T  R  +
Sbjct: 586  LPAGQNAIVAILCYTGYNQEDSLIMNQSSIDRGLFRSIFFRSYMDEEDKLGMRTMGRFEK 645

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R      R+++  +       LDDDGL APG  +  +D+ I K +P+      +   G
Sbjct: 646  PSRA--STLRLKIGTYEK-----LDDDGLIAPGTRVTGDDIIIGKTTPIPIASLEL---G 695

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            Q    +     +      E+ +VD+V L ++ +G   +K  +R TR P++GDKF+SRHGQ
Sbjct: 696  QRTLAHTKLDASKPLRATESGIVDQVLLTTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQ 755

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G +   ED PF+  GI PDLI+NPH  PSRMT+G +IE L  K     G     S 
Sbjct: 756  KGTIGIVYTSEDMPFTADGIVPDLIINPHAIPSRMTIGHLIECLLSKLATLVGTAADASP 815

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            F +      TV++IS  L   G+   G +++Y+G +G  L + +F GP YYQ+LKHMV D
Sbjct: 816  FTDV-----TVDAISAELFSLGYHSRGLEVMYNGHSGRKLYSQVFFGPTYYQRLKHMVDD 870

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            K+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 871  KIHSRARGPLQILTRQPVEGRSRDGGLR 898


>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Amanita phalloides]
          Length = 917

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 335/942 (35%), Positives = 517/942 (54%), Gaps = 81/942 (8%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+++ N V +    +         I ++V    +T+    V    + +   L
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSL 60

Query: 235  LN------QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDI 285
             N       ++K  +PI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I
Sbjct: 61   GNVIKATIPYIKVDVPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVI 119

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M+
Sbjct: 120  QDREVALDFIGNR--GTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMI 177

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
             R++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V +     LSK   +
Sbjct: 178  HRLLVAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYR----YLSKCVET 233

Query: 406  SR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRV 463
             + F+L+  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R 
Sbjct: 234  HKEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSTKAGVSQVLNRYTYASTLSHLRRC 293

Query: 464  SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC 523
            +    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P+I   
Sbjct: 294  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFL 353

Query: 524  YCLGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
               G+E LE    E  H+      +F NG+ +G HR P      ++KLRR   I   VSV
Sbjct: 354  EEWGLESLE----ENAHSAVPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSV 409

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG------VRSFDDFLREG 636
              + ++R + + +D GRVCRPL I +     +++ H++ L +G      V  ++  ++ G
Sbjct: 410  VRDIRERELRLYTDAGRVCRPLFIVENHQLALQKKHVRWLGNGSNDDGDVFRWEHLVKGG 469

Query: 637  LIEYLDVNEENNALIA------------------------------LYEGDATPDTTHIE 666
            ++E LD  EE   +I+                              L  G +    TH E
Sbjct: 470  IVELLDAEEEETVMISMTPEDLETSRLQQSGVDPNVNDGEYDPAVRLKAGTSAHTWTHCE 529

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+P
Sbjct: 530  IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKP 589

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  +
Sbjct: 590  LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDL 649

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             +K      +   +P R      RM+   +       L+DDGL APG  +   D+ I K 
Sbjct: 650  EKKSGVQQLEEFEKPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTNVTGEDIIIGKT 702

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            +P+      +    +T +R R      K    E+ +VD+V + ++  G   +K  +R TR
Sbjct: 703  APIPPDSEELGQRTRTHTR-RDVSTPLKST--ESGIVDQVLITTNSEGQKFVKVRVRATR 759

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  
Sbjct: 760  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLS 819

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     G     + F +      TVES+S  L + G+   G +++Y G TG  LQA I++
Sbjct: 820  KVATLIGNEGDATPFTDL-----TVESVSTFLRQKGYHSRGLEVMYHGHTGRKLQAQIYL 874

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 875  GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 916


>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 896

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 328/923 (35%), Positives = 505/923 (54%), Gaps = 69/923 (7%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDK-------KGNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKV++ QE+ + N V + +         +  I +      +T+ S  V       +   
Sbjct: 1    SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKMSRDQNITAS 60

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKA 291
            L    + IPIMV+ +A+G+ +D+++++ +     D +   +L PSI+      I  +E A
Sbjct: 61   LPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNA--FTIQEREVA 118

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+++ GK  R+  G   + R   A  +L    L ++ +       K +++  M+ R++ A
Sbjct: 119  LDFI-GKRGRN-IGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYMVHRLLLA 176

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L +  +DD+D+ G KRL+L+G L++ LF   F+ +  +V +   + +    R   F+L+
Sbjct: 177  ALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIE---RGREFNLN 233

Query: 412  QFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
              I  ++IT GL   L+TGN+ D K+F   R G++QVL R +F  TL H+ R++    + 
Sbjct: 234  MAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIGRE 293

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
             K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM +++     GP++        E+
Sbjct: 294  GKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEWTTEN 353

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            LE ++   + +     V  NG  +G HR+P      +  LRR+G I   VSV  + +   
Sbjct: 354  LEEITASAIGSNTKVFV--NGSWVGIHRQPDSLVQTLISLRRSGDIMPEVSVVRDVRDNE 411

Query: 591  VYIASDGGRVCRPLVIADKGISRI-KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNA 649
            + I +D GR+CRPL I ++    + +  H+  L  G   +++ L  G++EYLD  EE   
Sbjct: 412  LRIYTDAGRICRPLFIVNEQQQLVLRRDHVARLEVGEWGWEELLANGIVEYLDTEEEETT 471

Query: 650  LI-------ALYEGDATPD---------------------TTHIEIEPFTILGVIAGLIP 681
            +I       A   GD  PD                      +H EI P  ILG+ A +IP
Sbjct: 472  MICMTPDDLAESRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGICASIIP 531

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RMD+L  +L YPQ+PL+ TR+++ + + +L
Sbjct: 532  FPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATRSMKYLRFREL 591

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+I+MN+SS+DRG  R I  + Y    +K   S  +   +P
Sbjct: 592  PAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQEKKSGFSDVETFEKP 651

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM-SPTG 860
             R       +++ H S      +++DGL APG  +  +D+ I K +PL    S M + T 
Sbjct: 652  AR----ETTLKLRHGS---YDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDTSEMGARTT 704

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            QT     ++ ++      E  +VD V L ++ +G   +K  +R TR P++GDKF+SRHGQ
Sbjct: 705  QTKKDVSTSLKS-----TEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQ 759

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PFS  G+ PDLI+NPH  PSRMT+G ++E L  K G   G       
Sbjct: 760  KGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSLTG------T 813

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             G+ +   D TV+ I++ L   G+   G +++Y+G TG  L A +F GP YYQ+LKHMV 
Sbjct: 814  EGDATPFTDITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTYYQRLKHMVD 873

Query: 1040 DKMHARGSGPRVMLTRQPTEGRA 1062
            DK+H+R  GP  +LTRQP EGR+
Sbjct: 874  DKIHSRARGPLQILTRQPVEGRS 896


>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
          Length = 906

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 340/916 (37%), Positives = 495/916 (54%), Gaps = 67/916 (7%)

Query: 101 LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++      +G   E+ T   E   V IG++PIMLRS  C +
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTV 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
           Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 210 SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
           S+  +     S   ++M           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125 SMAENQNRPPSSMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260 VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
           ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A 
Sbjct: 185 LEHICYDFADTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTKEKRIKYAK 240

Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            IL+   L +V         K +Y   ++ R++   + +   DD+D+ GNKRL+L+G L+
Sbjct: 241 EILQKEMLPHVGTGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377 SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
             LF  LF+ +  +V    QK VD            +L   I   ++T GL+ +L+TGN+
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTVTSGLKYSLATGNW 353

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                   R G++QVL RL+F  TL H+ R++    +  K++ PR L  S WGM+CP +T
Sbjct: 354 GQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAET 413

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
           PEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P +  +  NG 
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVI--PQATKIFVNGC 471

Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +G HR P      +R LRR   +   V V  + + + + + +D GR  RPL I +K   
Sbjct: 472 WVGIHRNPDLLVKTLRLLRRRVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531

Query: 613 RIKEHHMKELLD---GVRSFDDFLREGLIEYLDVNEENNALIALYEGD----------AT 659
            IK+  ++ L         + D + +G IEY+D  EE   +I++   D          A 
Sbjct: 532 LIKKKDIRVLQQRETQEEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPEEAY 591

Query: 660 PDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
            DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y
Sbjct: 592 SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAY 651

Query: 719 LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
           +L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R +
Sbjct: 652 VLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 711

Query: 779 VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKP 838
             + Y    +K      +   RP+R       M + H S      LDDDGLA PG  +  
Sbjct: 712 FFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTRVSG 764

Query: 839 NDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCI 898
            DV I K SP+    S     GQT SRY     +      E+ +VD+V L ++ +G   +
Sbjct: 765 EDVIIGKTSPIAQDES----QGQT-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFV 819

Query: 899 KFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 958
           K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  PSRMT+G
Sbjct: 820 KVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIG 879

Query: 959 KMIELLGGKAGVSCGR 974
           ++IE + GK     G+
Sbjct: 880 QLIECIMGKVAAHMGK 895


>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
          Length = 914

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 332/939 (35%), Positives = 511/939 (54%), Gaps = 78/939 (8%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTETVKSKTVIQM---------EKG 229
            +EKVL+ QE+++ N V +    +    N  A + S+ E    KT+ Q          E+ 
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEK-GGKTISQFQVKMFHRNQERS 59

Query: 230  KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYT 287
              +  +      IPI VV + +G+ SD+++++ +  D +  A +L  ++ C +    I  
Sbjct: 60   VSFTTIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQD 118

Query: 288  QEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
            +E AL+++  +   +T G     R   A  IL+   L +V +   +   K ++   M+ R
Sbjct: 119  REVALDFIGNR--GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 176

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR 407
            ++ A L +  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        
Sbjct: 177  LLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKE 233

Query: 408  FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQ 466
            F+L+  +   +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +  
Sbjct: 234  FNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTP 293

Query: 467  FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL 526
              +  K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I      
Sbjct: 294  LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEW 353

Query: 527  GVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVN 585
            G+E LE    E  H+ +    +F NG+ +G HR P      ++KLRR   I   VSV  +
Sbjct: 354  GLESLE----ENAHSTSPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRD 409

Query: 586  EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV------RSFDDFLREGLIE 639
             +++ + I +D GRVCRPL I +     + + H++ L  G         ++  ++ G+IE
Sbjct: 410  IREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIE 469

Query: 640  YLDVNEENNALIALY-------------------EGDATPDT-----------THIEIEP 669
             LD  EE   +I++                    +GD  P             TH EI P
Sbjct: 470  LLDAEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTHCEIHP 529

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
              ILG+ A +IP+P HNQSPRNTYQ AM KQAMG    N L RMD++  +L YPQ+PL T
Sbjct: 530  SMILGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFLIRMDTMANILYYPQKPLAT 589

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            TR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K
Sbjct: 590  TRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKK 649

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPL 849
                  +   +P R      RM+   +       L+DDGL APG  ++  D+ I K +P+
Sbjct: 650  SGIQQLEEFEKPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTGVRGEDIIIGKTAPI 702

Query: 850  ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 909
                  +    +T +R R      K    E  +VD+V + ++  G   +K  +R TR P+
Sbjct: 703  PPDSEELGQRTRTHTR-RDVSTPLKST--EIGIVDQVLITTNSEGQKFVKVRVRATRIPQ 759

Query: 910  LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969
            +GDKF+S HGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  K  
Sbjct: 760  IGDKFASCHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVA 819

Query: 970  VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPI 1029
               G     + F +      TVES+S  L + G+   G +++Y G TG  LQA I++GP 
Sbjct: 820  TLIGNEGDATPFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPT 874

Query: 1030 YYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 875  YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 913


>gi|347600624|gb|AEP15111.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 88]
          Length = 1156

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 363/1178 (30%), Positives = 611/1178 (51%), Gaps = 84/1178 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---SGIDPSIFLRFKDVRIG 88
            + ++ +++     V   ++S+++F+   +  I+     I    S    S  + F +  + 
Sbjct: 10   WSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISYMHSSGKVSHHVHFTNPSVN 69

Query: 89   QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-----DVVIG 142
            +P++   DG  + + PH+ RL  +TY++ ++V++ + + +HT       N     +V+I 
Sbjct: 70   RPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRKVFRNVIIA 129

Query: 143  RIPIMLRSCRCVLYGKDEAEL---ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
            +IP+M+RS  C L    E +L   A+  EC +DPGGYFII G EK L+ Q ++  N V I
Sbjct: 130  QIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQTKIRTNHVFI 189

Query: 200  DTDKKGN---INASVTSSTET-VKSKTVIQM-----EKGKMYLLLNQ--FVK-KIPIMVV 247
               K G      A V S  E  ++S + I M       G++ ++  +  F+K  + + ++
Sbjct: 190  FPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSVFIL 249

Query: 248  MKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
             + +G ES  +++  +G  P+ +  +L  + +      Y+++  ++++   V   T  + 
Sbjct: 250  FRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRNVTSDTTRAT 309

Query: 308  PNDREGRAFSILRDVFLANVPVHNN--NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
               RE     I+      ++ + NN    + K  ++  M++R++     ++ +DD+D   
Sbjct: 310  KESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFI 369

Query: 366  NKRLELSGQLVSLLFE-----DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            NKR++ +G L++LL       +  + + ++++K V+       R + F++ + +    IT
Sbjct: 370  NKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVE-----SPREATFNVGEIVSHKKIT 424

Query: 421  VGLERTLSTGNFDVKR----FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             GL+   +TG + + R        + G+ Q+L RL+ + TLG   +++    +  + +GP
Sbjct: 425  SGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINTPIAREGRTAGP 484

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L PS WG++C  DTPEG+ACGLV NLA+ T +       P+  L   L    +++ + 
Sbjct: 485  RMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAILLMTLD-HTIDISTA 543

Query: 537  EELHNPNSFLVIFNGLILGKH---RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
                    + +  NG I+G      + K  A  MR LRR G +    S+ ++     +++
Sbjct: 544  TSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHGNLPFDCSISIS-NDNSLFV 602

Query: 594  ASDGGRVCRPLVIADKGISRIKEHH------MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
             SD G + RPL+I D+       +H      M+        +   LREG+IEY+D  E+ 
Sbjct: 603  NSDHGALLRPLIIRDR-------YHDFVCMAMQNPAVVPNKYTRMLREGIIEYIDSAEQT 655

Query: 648  NALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
            N  +A++  D   D  THIEI P  + G+    IP+  HNQSPR  YQ A  KQA+G   
Sbjct: 656  NMRVAIHHTDIEQDEYTHIEIHPALLTGICVSQIPFCDHNQSPRIAYQAAQCKQAIGLYT 715

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   R+D++ ++L  PQ+PL+TTR  EL+G   + +G    VA+M YSG++ +D++++N
Sbjct: 716  TNFAERLDTVGHVLATPQKPLVTTRLEELLGTSVVRSGAVPIVAIMCYSGFNQDDSVLLN 775

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSD--RILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +SS+DRG         Y  I  +   + +D  R   P +  PG   M+   +S +     
Sbjct: 776  QSSIDRGLFTSFA---YHTIRDEEKGTGADIERFENP-KNIPGCSGMKEADYSKI----- 826

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR-QTYKGPDGETCVV 883
            DD G+   G+     DV I K   + +   + +   + + R  + R +++     E  VV
Sbjct: 827  DDKGMPIIGKTFYNGDVLIGK---VVSMSLLQADPKEGEVRRDTKRDRSHVLRTDEPVVV 883

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D V L     G   +K   R  R P +GDKFSSRHGQKGVCG  +   DFP +  G+ PD
Sbjct: 884  DAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFSSRHGQKGVCGVTMPAADFPCTADGVAPD 943

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G ++E++  K     G    G+ F       + +E I++ L  HG 
Sbjct: 944  IIINPHAIPSRMTIGMLMEMVLSKVACYEGETQDGTPFT-----GNNIELIADRLETHGM 998

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +M+Y+G++G  L++ IF+ P YYQ+LKHMV+DK HAR  G + +LTR PTEGR+R
Sbjct: 999  QRYGNEMLYNGMSGEMLESMIFIAPCYYQRLKHMVVDKSHARNRGAQQLLTRAPTEGRSR 1058

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAG-- 1118
            +GGLR+GEME+D +I++GA  +  +RL   SD FE   C  CG     G  +  +K    
Sbjct: 1059 DGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKCGHFAREGTDDTSVKNSGM 1118

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             C  CK G++ +  +LPY+ KLLIQEL + +I   L+ 
Sbjct: 1119 WCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLEF 1156


>gi|120561245|gb|ABM27007.1| RNA polymerase II second largest subunit, partial [Capniomyces
            stellatus]
          Length = 924

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 330/953 (34%), Positives = 514/953 (53%), Gaps = 98/953 (10%)

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQ--------MEKGK---- 230
            EKVL+ QE+++ N V +   KK       T+   +V  +   Q        + +GK    
Sbjct: 2    EKVLIAQERIATNTVFVF--KKNVPQVHYTAEIRSVAERASKQASPLFLKKLARGKAGGG 59

Query: 231  ----------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLP---SI 277
                      +   +      IP++VV +A+GM + +++++ +  D   + LL     SI
Sbjct: 60   GGSGGGSSGGIQATIPYIRSDIPVVVVFRALGMVAAKDILEHICYDGNDNELLEEFKGSI 119

Query: 278  EECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPK 337
            EE     I  +E +L+++ GK + +T G     R   A  IL+  FL +V    +N   K
Sbjct: 120  EE--GFVIQDKEVSLDFI-GK-RGTTVGVSKEKRVKYAREILQKEFLPHVGTQAHNETRK 175

Query: 338  CFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF----KTMISEVQK 393
             ++   M+ R++   L +   DD+D+ G KR++L+G L+++LF +LF    K M   +QK
Sbjct: 176  TYFFGYMIHRLLLCGLERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQK 235

Query: 394  TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLS 452
             +D           F+L+  +  ++IT GL+ +L+TGN+ D K+    R G++QVL R +
Sbjct: 236  CID-------SKREFNLTMAMKSNTITAGLKYSLATGNWGDQKKAMQSRTGVSQVLNRYT 288

Query: 453  FIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 512
            F  TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM H+T 
Sbjct: 289  FASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITV 348

Query: 513  DEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR 572
              + GP++       +E+LE L+G  +++     V  NG+ +G H+ P      +++LRR
Sbjct: 349  GTDSGPILLFLEEWAMENLEELAGSSINDSTKIFV--NGVWVGIHKEPIRLVSTLKQLRR 406

Query: 573  AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKEL-------LDG 625
              +    VS+  + +++ + I +D GRVCRPL + +     I +  +K +       ++ 
Sbjct: 407  RLEFSYEVSIVRDVREKELRILTDSGRVCRPLFVVNNSRLNINKDVIKAIEAREVSDVEA 466

Query: 626  VRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD------------------------ 661
            VR + D L EG+IEYLD  EE  A+I +   + T                          
Sbjct: 467  VR-WHDLLSEGIIEYLDAEEEETAMIIMTPQELTESRLYVENGIVPAVELDLASRVKSKR 525

Query: 662  ------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                   TH EI P  ILG+ A ++P+P HNQSPRNTYQ AMGKQAMG +  +   RMD+
Sbjct: 526  NIGISTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIMLTSYQLRMDT 585

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            L  +L YPQ+PL TT ++E + +  L AGQNA VA++ YSGY+ ED+++M+++S+DRG  
Sbjct: 586  LSNILYYPQKPLATTHSMEYLKFSDLPAGQNAIVAILCYSGYNQEDSLIMSQTSIDRGLF 645

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R I  + Y     K    T  +  +P R     E    + H       L++DGL APG  
Sbjct: 646  RSIFFRSYQDEEDKLGMRTMGKFEKPTR-----ETTLRLKHGTYEK--LEEDGLIAPGTR 698

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +  +D+ I K +P+      +     T ++  +++        ET +VD+V L ++ +G 
Sbjct: 699  VTGDDIIIGKTTPIPVDSLELGQRTVTHTKLDASKPLR---STETGIVDQVMLTTNGDGF 755

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R TR P++GDKF+SRHGQKG  G   + ED PF+ +G+ PDLI+NPH  PSRM
Sbjct: 756  KFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRSEDMPFTSQGLVPDLIINPHAIPSRM 815

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            T+G ++E L  K     G     + F +      TV++IS  L   G+   G +++Y+G 
Sbjct: 816  TIGHLVECLLSKLATLMGTTADATPFTDV-----TVDAISHELFNLGYQSRGFEVMYNGH 870

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            TG  L   +F GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 871  TGRKLYTQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLR 923


>gi|347481989|gb|AEO97975.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 84]
          Length = 1156

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 362/1178 (30%), Positives = 611/1178 (51%), Gaps = 84/1178 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---SGIDPSIFLRFKDVRIG 88
            + ++ +++     V   ++S+++F+   +  I+     I    S    S  + F +  + 
Sbjct: 10   WSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISYMHSSGKVSHHVHFTNPSVN 69

Query: 89   QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-----DVVIG 142
            +P++   DG  + + PH+ RL  +TY++ ++V++ + + +HT       N     +V+I 
Sbjct: 70   RPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRKVFRNVIIA 129

Query: 143  RIPIMLRSCRCVLYGKDEAEL---ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
            +IP+M+RS  C L    E +L   A+  EC +DPGGYFII G EK L+ Q ++  N V I
Sbjct: 130  QIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQTKIRTNHVFI 189

Query: 200  DTDKKGN---INASVTSSTET-VKSKTVIQME-----KGKMYLLLNQ--FVK-KIPIMVV 247
               K G      A V S  E  ++S + I M       G++ ++  +  F+K  + + ++
Sbjct: 190  FPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSVFIL 249

Query: 248  MKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
             + +G ES  +++  +G  P+ +  +L  + +      Y+++  ++++   V   T  + 
Sbjct: 250  FRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRNVTSDTTRAT 309

Query: 308  PNDREGRAFSILRDVFLANVPVHNN--NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
               RE     I+      ++ + NN    + K  ++  M++R++     ++ +DD+D   
Sbjct: 310  KESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFI 369

Query: 366  NKRLELSGQLVSLLFE-----DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            NKR++ +G L++LL       +  + + ++++K V+       R + F++ + +    IT
Sbjct: 370  NKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVE-----SPREATFNVGEIVSHKKIT 424

Query: 421  VGLERTLSTGNFDVKR----FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             GL+   +TG + + R        + G+ Q+L RL+ + TLG   +++    +  + +GP
Sbjct: 425  SGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINTPIAREGRTAGP 484

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L PS WG++C  DTPEG+ACGLV NLA+ T +       P+  L   L    +++ + 
Sbjct: 485  RMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAILLMTLD-HTIDISTA 543

Query: 537  EELHNPNSFLVIFNGLILGKH---RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
                    + +  NG I+G      + K  A  MR LRR G +    S+ ++     +++
Sbjct: 544  TSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHGNLPFDCSISIS-NDNSLFV 602

Query: 594  ASDGGRVCRPLVIADKGISRIKEHH------MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
             SD G + RPL+I D+       +H      M+        +   LREG+IEY+D  E+ 
Sbjct: 603  NSDHGALLRPLIIRDR-------YHDFVCMAMQNPAVVPNKYTRMLREGIIEYIDSAEQT 655

Query: 648  NALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
            N  +A++  D   D  THIEI P  + G+    IP+  HNQSPR  YQ A  KQA+G   
Sbjct: 656  NMRVAIHHTDIEQDEYTHIEIHPALLTGICVSQIPFCDHNQSPRIAYQAAQCKQAIGLYT 715

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   R+D++ ++L  PQ+PL+TTR  EL+G   + +G    VA+M YSG++ +D++++N
Sbjct: 716  TNFAERLDTVGHVLATPQKPLVTTRLEELLGTSVVRSGAVPIVAIMCYSGFNQDDSVLLN 775

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSD--RILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +SS+DRG         Y  I  +   + +D  R   P +  PG   M+   +S +     
Sbjct: 776  QSSIDRGLFTSFA---YHTIRDEEKGTGADIERFENP-KNIPGCSGMKEADYSKI----- 826

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR-QTYKGPDGETCVV 883
            DD G+   G+     DV I K   + +   + +   + + R  + R +++     E  VV
Sbjct: 827  DDKGMPIIGKTFYNGDVLIGK---VVSMSLLQADPKEGEVRRDTKRDRSHVLRTDEPVVV 883

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D V L     G   +K   R  R P +GDKFS+RHGQKGVCG  +   DFP +  G+ PD
Sbjct: 884  DAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPD 943

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G ++E++  K     G    G+ F       + +E I++ L  HG 
Sbjct: 944  IIINPHAIPSRMTIGMLMEMVLSKVACYEGETQDGTPFT-----GNNIELIADRLETHGM 998

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +M+Y+G++G  L++ IF+ P YYQ+LKHMV+DK HAR  G + +LTR PTEGR+R
Sbjct: 999  QRYGNEMLYNGMSGEMLESMIFIAPCYYQRLKHMVVDKSHARNRGAQQLLTRAPTEGRSR 1058

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAG-- 1118
            +GGLR+GEME+D +I++GA  +  +RL   SD FE   C  CG     G  +  +K    
Sbjct: 1059 DGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKCGHFAREGTDDTSVKNSGM 1118

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             C  CK G++ +  +LPY+ KLLIQEL + +I   L+ 
Sbjct: 1119 WCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLEF 1156


>gi|347482406|gb|AEO98347.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 203]
 gi|347600966|gb|AEP15452.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 207]
 gi|347601602|gb|AEP16087.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 208]
 gi|357972871|gb|AET98144.1| RNA polymerase II [Emiliania huxleyi virus 201]
          Length = 1156

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 362/1178 (30%), Positives = 611/1178 (51%), Gaps = 84/1178 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---SGIDPSIFLRFKDVRIG 88
            + ++ +++     V   ++S+++F+   +  I+     I    S    S  + F +  + 
Sbjct: 10   WSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISYMHSSGKVSHHVHFTNPSVN 69

Query: 89   QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-----DVVIG 142
            +P++   DG  + + PH+ RL  +TY++ ++V++ + + +HT       N     +V+I 
Sbjct: 70   RPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRKVFRNVIIA 129

Query: 143  RIPIMLRSCRCVLYGKDEAEL---ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
            +IP+M+RS  C L    E +L   A+  EC +DPGGYFII G EK L+ Q ++  N V I
Sbjct: 130  QIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQTKIRTNHVFI 189

Query: 200  DTDKKGN---INASVTSSTET-VKSKTVIQME-----KGKMYLLLNQ--FVK-KIPIMVV 247
               K G      A V S  E  ++S + I M       G++ ++  +  F+K  + + ++
Sbjct: 190  FPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSVFIL 249

Query: 248  MKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
             + +G ES  +++  +G  P+ +  +L  + +      Y+++  ++++   V   T  + 
Sbjct: 250  FRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRNVTSDTTRAT 309

Query: 308  PNDREGRAFSILRDVFLANVPVHNN--NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
               RE     I+      ++ + NN    + K  ++  M++R++     ++ +DD+D   
Sbjct: 310  KESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFV 369

Query: 366  NKRLELSGQLVSLLFE-----DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            NKR++ +G L++LL       +  + + ++++K V+       R + F++ + +    IT
Sbjct: 370  NKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVE-----SPREATFNVGEIVSHKKIT 424

Query: 421  VGLERTLSTGNFDVKR----FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             GL+   +TG + + R        + G+ Q+L RL+ + TLG   +++    +  + +GP
Sbjct: 425  SGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINTPIAREGRTAGP 484

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L PS WG++C  DTPEG+ACGLV NLA+ T +       P+  L   L    +++ + 
Sbjct: 485  RMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPMQPIAILLMTLD-HTIDISTA 543

Query: 537  EELHNPNSFLVIFNGLILGKH---RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
                    + +  NG I+G      + K  A  MR LRR G +    S+ ++     +++
Sbjct: 544  TSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHGNLPFDCSISIS-NDNSLFV 602

Query: 594  ASDGGRVCRPLVIADKGISRIKEHH------MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
             SD G + RPL+I D+       +H      M+        +   LREG+IEY+D  E+ 
Sbjct: 603  NSDHGALLRPLIIRDR-------YHDFVCMAMQNPAVVPNKYTRMLREGIIEYIDSAEQT 655

Query: 648  NALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
            N  +A++  D   D  THIEI P  + G+    IP+  HNQSPR  YQ A  KQA+G   
Sbjct: 656  NMRVAIHHTDIEQDEYTHIEIHPALLTGICVSQIPFCDHNQSPRIAYQAAQCKQAIGLYT 715

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   R+D++ ++L  PQ+PL+TTR  EL+G   + +G    VA+M YSG++ +D++++N
Sbjct: 716  TNFAERLDTVGHVLATPQKPLVTTRLEELLGTSVVRSGAVPIVAIMCYSGFNQDDSVLLN 775

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSD--RILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +SS+DRG         Y  I  +   + +D  R   P +  PG   M+   +S +     
Sbjct: 776  QSSIDRGLFTSFA---YHTIRDEEKGTGADIERFENP-KNIPGCSGMKEADYSKI----- 826

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR-QTYKGPDGETCVV 883
            DD G+   G+     DV I K   + +   + +   + + R  + R +++     E  VV
Sbjct: 827  DDKGMPIIGKTFYNGDVLIGK---VVSMSLLQADPKEGEVRRDTKRDRSHVLRTDEPVVV 883

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D V L     G   +K   R  R P +GDKFS+RHGQKGVCG  +   DFP +  G+ PD
Sbjct: 884  DAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPD 943

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G ++E++  K     G    G+ F       + +E I++ L  HG 
Sbjct: 944  IIINPHAIPSRMTIGMLMEMVLSKVACYEGETQDGTPFT-----GNNIELIADRLETHGM 998

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +M+Y+G++G  L++ IF+ P YYQ+LKHMV+DK HAR  G + +LTR PTEGR+R
Sbjct: 999  QRYGNEMLYNGMSGEILESMIFIAPCYYQRLKHMVVDKSHARNRGAQQLLTRAPTEGRSR 1058

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAG-- 1118
            +GGLR+GEME+D +I++GA  +  +RL   SD FE   C  CG     G  +  +K    
Sbjct: 1059 DGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKCGHFAREGTDDTSVKNSGM 1118

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             C  CK G++ +  +LPY+ KLLIQEL + +I   L+ 
Sbjct: 1119 WCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLEF 1156


>gi|73852908|ref|YP_294192.1| putative DNA-directed RNA polymerase II subunit [Emiliania huxleyi
            virus 86]
 gi|72415624|emb|CAI65861.1| putative DNA-directed RNA polymerase II subunit [Emiliania huxleyi
            virus 86]
          Length = 1156

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 362/1178 (30%), Positives = 610/1178 (51%), Gaps = 84/1178 (7%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---SGIDPSIFLRFKDVRIG 88
            + ++ +++     V   ++S+++F+   +  I+     I    S    S  + F +  + 
Sbjct: 10   WSVIGDYINSVSPVAHQIESYDHFIENQLPYIISEGSDISYMHSSGKVSHHVHFTNPSVN 69

Query: 89   QPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN-----DVVIG 142
            +P++   DG  + + PH+ RL  +TY++ ++V++ + + +HT       N     +V+I 
Sbjct: 70   RPAIQESDGFYKPITPHIARLRGLTYSSTVVVDVIHDRINHTVSPPTLINRKVFRNVIIA 129

Query: 143  RIPIMLRSCRCVLYGKDEAEL---ARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
            +IP+M+RS  C L    E +L   A+  EC +DPGGYFII G EK L+ Q ++  N V I
Sbjct: 130  QIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEKTLIPQTKIRTNHVFI 189

Query: 200  DTDKKGN---INASVTSSTET-VKSKTVIQM-----EKGKMYLLLNQ--FVK-KIPIMVV 247
               K G      A V S  E  ++S + I M       G++ ++  +  F+K  + + ++
Sbjct: 190  FPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSVFIL 249

Query: 248  MKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSP 307
             + +G ES  +++  +G  P+ +  +L  + +      Y+++  ++++   V   T  + 
Sbjct: 250  FRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRNVTSDTTRAT 309

Query: 308  PNDREGRAFSILRDVFLANVPVHNN--NFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVG 365
               RE     I+      ++ + NN    + K  ++  M++R++     ++ +DD+D   
Sbjct: 310  KESREKYIDHIITSELAPHMGLVNNPETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFI 369

Query: 366  NKRLELSGQLVSLLFE-----DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT 420
            NKR++ +G L++LL       +  + + ++++K V+       R + F++ + +    IT
Sbjct: 370  NKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVE-----SPREATFNVGEIVSHKKIT 424

Query: 421  VGLERTLSTGNFDVKR----FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
             GL+   +TG + + R        + G+ Q+L RL+ + TLG   +++    +  + +GP
Sbjct: 425  SGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGASRKINTPIAREGRTAGP 484

Query: 477  RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
            R L PS WG++C  DTPEG+ACGLV NLA+ T +       P+  L   L    +++ + 
Sbjct: 485  RMLHPSSWGLVCCSDTPEGQACGLVSNLAITTRIRIGAPMQPIAILLMTLD-HTIDISTA 543

Query: 537  EELHNPNSFLVIFNGLILGKH---RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
                    + +  NG I+G      + K  A  MR LRR G +    S+ ++     +++
Sbjct: 544  TSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHGNLPFDCSISIS-NDNSLFV 602

Query: 594  ASDGGRVCRPLVIADKGISRIKEHH------MKELLDGVRSFDDFLREGLIEYLDVNEEN 647
             SD G + RPL+I D+       +H      M+        +   LREG+IEY+D  E+ 
Sbjct: 603  NSDHGALLRPLIIRDR-------YHDFVCMAMQNPAVVPNKYTRMLREGIIEYIDSAEQT 655

Query: 648  NALIALYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIA 706
            N  +A++  D   D  THIEI P  + G+    IP+  HNQSPR  YQ A  KQA+G   
Sbjct: 656  NMRVAIHHTDIEQDEYTHIEIHPALLTGICVSQIPFCDHNQSPRIAYQAAQCKQAIGLYT 715

Query: 707  FNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMN 766
             N   R+D++ ++L  PQ+PL+TTR  EL+G   + +G    VA+M YSG++ +D++++N
Sbjct: 716  TNFAERLDTVGHVLATPQKPLVTTRLEELLGTSVVRSGAVPIVAIMCYSGFNQDDSVLLN 775

Query: 767  KSSLDRGFGRCIVVKKYTAINQKYANSTSD--RILRPDRTGPGAERMQVVHHSNLLLLIL 824
            +SS+DRG         Y  I  +   + +D  R   P +  PG   M+   +S +     
Sbjct: 776  QSSIDRGLFTSFA---YHTIRDEEKGTGADIERFENP-KNIPGCSGMKEADYSKI----- 826

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR-QTYKGPDGETCVV 883
            DD G+   G+     DV I K   + +   + +   + + R  + R +++     E  VV
Sbjct: 827  DDKGMPIIGKTFYNGDVLIGK---VVSMSLLQADPKEGEVRRDTKRDRSHVLRTDEPVVV 883

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D V L     G   +K   R  R P +GDKFS+RHGQKGVCG  +   DFP +  G+ PD
Sbjct: 884  DAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPD 943

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +I+NPH  PSRMT+G ++E++  K     G    G+ F       + +E I++ L  HG 
Sbjct: 944  IIINPHAIPSRMTIGMLMEMVLSKVACYEGETQDGTPFT-----GNNIELIADRLETHGM 998

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +M+Y+G++G  L++ IF+ P YYQ+LKHMV+DK HAR  G + +LTR PTEGR+R
Sbjct: 999  QRYGNEMLYNGMSGEMLESMIFIAPCYYQRLKHMVVDKSHARNRGAQQLLTRAPTEGRSR 1058

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL---GYYNHKLKAG-- 1118
            +GGLR+GEME+D +I++GA  +  +RL   SD FE   C  CG     G  +  +K    
Sbjct: 1059 DGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKCGHFAREGTDDTSVKNSGM 1118

Query: 1119 ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
             C  CK G + +  +LPY+ KLLIQEL + +I   L+ 
Sbjct: 1119 WCEHCKTGKHCTHTQLPYSMKLLIQELAAAHISATLEF 1156


>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis aurantiaca]
          Length = 863

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 317/865 (36%), Positives = 478/865 (55%), Gaps = 66/865 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 24   IPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 81

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +D
Sbjct: 82   -GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELD 140

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LFK +  +V + +   +        F+LS  +   +I
Sbjct: 141  DRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVET---HKEFNLSLAVKHQTI 197

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 198  TNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 257

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I      G+E LE    E 
Sbjct: 258  LHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE----EN 313

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D 
Sbjct: 314  AHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDA 373

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRS-------FDDFLREGLIEYLDVNEENNAL 650
            GRVCRPL I +     +++ H+K L  G R        ++  ++ G+IE LD  EE   +
Sbjct: 374  GRVCRPLFIVENQQLMLQKKHVKWLNQGYREEDGEEYKWEQLIKGGIIELLDAEEEETVM 433

Query: 651  IA------------------------------LYEGDATPDTTHIEIEPFTILGVIAGLI 680
            I+                              L  G      TH EI P  ILGV A +I
Sbjct: 434  ISMTPEDLENSRLQSAGIDPQSNDVDYDPAARLKAGINAHTWTHCEIHPSMILGVCASII 493

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +
Sbjct: 494  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRE 553

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +
Sbjct: 554  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEK 613

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R      RM+   +       ++DDGL APG  +   D+ I K +P+      +    
Sbjct: 614  PTRD--TTLRMKHGTYDK-----IEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRT 666

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            +T +R R      K    E  +VD+V + ++  G   +K  +R TR P+ GDKF+SRHGQ
Sbjct: 667  RTHTR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQ 723

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + 
Sbjct: 724  KGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATP 783

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            F +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV D
Sbjct: 784  FTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDD 838

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNG 1065
            K+H+R  GP  +LTRQP EGR+R+G
Sbjct: 839  KIHSRARGPVQILTRQPVEGRSRDG 863


>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
          Length = 892

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 315/865 (36%), Positives = 481/865 (55%), Gaps = 70/865 (8%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++    
Sbjct: 54   IPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREIALDFIGN-- 110

Query: 300  KRSTFGSPPNDREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
             R T      +R  R A  IL+   L +V +   +   K ++   M+ R++ A L +  +
Sbjct: 111  -RGTATGLSRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERPEL 169

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F++S  +  ++
Sbjct: 170  DDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVEG---HKAFNISLAVKHNT 226

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 227  ITNGLKYSLATGNWGDQKKSMTTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 286

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P+I      G+E LE    E
Sbjct: 287  QLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEWGLESLE----E 342

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+P     +F NG+ +G HR P      ++KLRR   I   VSV  + +++ + + +D
Sbjct: 343  NAHSPIPLTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTD 402

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRS---------FDDFLREGLIEYLDVNEEN 647
             GRVCRPL I +     +++ H+K L  G R          +D  ++ G+IEYLD  EE 
Sbjct: 403  AGRVCRPLFIVENQQLALQKKHVKWLNQGYRDDDPAQDPYKWDSLVKGGVIEYLDAEEEE 462

Query: 648  NALIALY-------------------EGDATPDT-----------THIEIEPFTILGVIA 677
              +I +                    +GD  P             TH EI P  ILG+ A
Sbjct: 463  TVMICMTPEDLENSRLQQQGIDPHANDGDFDPAARLKSVQNAHTWTHCEIHPSMILGICA 522

Query: 678  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
             +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + 
Sbjct: 523  SIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLK 582

Query: 738  YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
            + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y  + +K      + 
Sbjct: 583  FRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEE 642

Query: 798  ILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS 857
              +P R      RM+   +       ++DDGL APG  +   D+ I K +P+      + 
Sbjct: 643  FEKPTRE--TTLRMKHGTYDK-----IEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELG 695

Query: 858  PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSR 917
               +T +R R      K    E  +VD+V + ++ +G   +K  +R TR P++GDKF+SR
Sbjct: 696  QRTRTHTR-RDVSTPLKST--ENGIVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASR 752

Query: 918  HGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977
            HGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G    
Sbjct: 753  HGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGD 812

Query: 978  GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHM 1037
             + F +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHM
Sbjct: 813  ATPFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHM 867

Query: 1038 VLDKMHARGSGPRVMLTRQPTEGRA 1062
            V DK+H+R  GP  +LTRQP EGR+
Sbjct: 868  VDDKIHSRARGPVQILTRQPVEGRS 892


>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
            ZW02.30]
          Length = 896

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 315/863 (36%), Positives = 484/863 (56%), Gaps = 66/863 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +    +D +   +L P I+E     I  +E AL+Y+  +
Sbjct: 60   IPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDE--GFVIQDREIALDYIGNR 117

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +
Sbjct: 118  --GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDL 175

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+LS  +  ++
Sbjct: 176  DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLSLAVKHNT 232

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 233  ITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 292

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I      G+E LE    E
Sbjct: 293  QLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE----E 348

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D
Sbjct: 349  NAHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTD 408

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLREGLIEYLDVNEENNAL 650
             GRVCRPL I +     +++ H++ L+ G         +D+ +++G+IE LD  EE   +
Sbjct: 409  PGRVCRPLFIVENQQLLLQKRHIENLVRGKEDPEFEYKWDNLIKDGVIELLDAEEEETVM 468

Query: 651  IALY----------------EGDATPD-------------TTHIEIEPFTILGVIAGLIP 681
            I +                   DA  D              TH EI P  ILGV A +IP
Sbjct: 469  ICMTPEDLENSRLQAAGIDPHADAEFDPSARLKAPTNAHTWTHCEIHPSMILGVCASIIP 528

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 529  FPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFREL 588

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +P
Sbjct: 589  PAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 648

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      RM+   +       L++DGL APG  +   D+ I K +P+      +    +
Sbjct: 649  TRD--TTLRMKHGTYDK-----LEEDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTR 701

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
            T ++ R      K    E+ +VD+V + ++  G   +K  +R TR P++GDKF+SRHGQK
Sbjct: 702  THTK-RDVSTPLKS--TESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQK 758

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F
Sbjct: 759  GTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 818

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             +      TVES+S+ L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK
Sbjct: 819  TDL-----TVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 873

Query: 1042 MHARGSGPRVMLTRQPTEGRARN 1064
            +H+R  GP  +LTRQP EGR+R+
Sbjct: 874  IHSRARGPVQILTRQPVEGRSRD 896


>gi|6606137|gb|AAF19081.1|AF107809_1 DNA-dependent RNA polymerase II RPB140, partial [Peziza quelepidotia]
          Length = 927

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 341/954 (35%), Positives = 516/954 (54%), Gaps = 95/954 (9%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKSKTVIQMEKGKMY 232
            +EKVL+ QE+ + N  I+   KK           I ++V   +  + S  +    K    
Sbjct: 1    SEKVLIAQERSAAN--IVQVFKKAPPSPTPFVAEIRSAVEKGSRLISSMQIKMFGKMDSR 58

Query: 233  LLLNQFVKK--------IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                Q +K         IP+ +V +A+G+  D++++  V     D +   +L P +EE  
Sbjct: 59   GGYGQTIKSTLPYIKSDIPVAIVFRALGVIPDEDILNHVCYDRNDVQMLDMLKPCLEEA- 117

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               I  +E AL+++ G+ + S+ G   + R   A  IL+  FL ++     +   K F++
Sbjct: 118  -FVIQKREIALDFI-GR-RGSSSGVAKDKRVRYAREILQKEFLPHISQKEGSETRKAFFL 174

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ +M+   L +   DD+D+ G KRL+L+G L++ LF  LFK +  +V K     L K
Sbjct: 175  GYMVHQMLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRTLFKKLTKDVYK----YLQK 230

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
               SSR F+L+  +   +IT GL+ +L+TGN+ + K+    R G++QVL R +F  TL H
Sbjct: 231  CVESSREFNLTLAVKSTTITNGLKYSLATGNWGEQKKAASARAGVSQVLNRYTFASTLSH 290

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            +   +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM++V+      P+
Sbjct: 291  LRGTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSPADPI 350

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            I       +E LE    E   +PN+  +  NG+ +G HR P      ++KLRR   IG  
Sbjct: 351  IDFMLQRNMEVLE--EYEPSRSPNATKIFVNGVWVGIHRDPGFIVRTIQKLRRQNHIGHE 408

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFDD- 631
            VS+  + + R   I +D GR+CRPL + D       +G   +++HH+++L D     DD 
Sbjct: 409  VSLIQDIRNREFKIFTDAGRICRPLFVVDNDPASPRRGELVLQKHHIEKLEDDKDITDDE 468

Query: 632  -------FLREGLIEYLDVNEENNALIAL--------------YEGDATPD--------- 661
                    + +G++EY+D  EE   +I +              YE     D         
Sbjct: 469  QRYGWQGLISDGVVEYIDAEEEETVMIVMTPEDLETSRQFHAGYEIQQEIDPAQRVKAAV 528

Query: 662  ------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
                   TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 529  NKYAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYRERMDT 588

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            +  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  
Sbjct: 589  MANILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLF 648

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    ++   S  +   +P R       +++ H +      LDDDGL APG  
Sbjct: 649  RSLFFRTYMDQEKRIGMSVVEEFEKPTR----GNTLRLKHGT---YDKLDDDGLVAPGVR 701

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   D+ I K +P+      +   GQ    +     +      E  +VD+V + +++ G 
Sbjct: 702  VSGEDIIIGKTAPIAPNQEEL---GQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGL 758

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PDLI+NPH  PSRM
Sbjct: 759  KFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRM 818

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSG 1014
            T+  +IE    K  VS  R   G A    +   D TV+S+S+ L +HG+   G +++Y+G
Sbjct: 819  TIAHLIECQLSK--VSSLRGFEGDA----TPFTDVTVDSVSKLLREHGYQSRGFEIMYNG 872

Query: 1015 ITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
             TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGLR
Sbjct: 873  HTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLR 926


>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
          Length = 899

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 315/858 (36%), Positives = 476/858 (55%), Gaps = 68/858 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +  D + S +L    P I++     I  +E AL+++  +
Sbjct: 68   IPIWVVFRALGVISDRDILEHICYDMQDSQMLEVLKPCIDD--GFVIQDREVALDFIGNR 125

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +
Sbjct: 126  --GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERREL 183

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L++ LF  LFK +  +V + +   +        F+LS  +   +
Sbjct: 184  DDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVET---HKEFNLSLAVKHQT 240

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 241  ITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 300

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I      G+E LE    E
Sbjct: 301  QLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE----E 356

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D
Sbjct: 357  NAHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTD 416

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRS-------FDDFLREGLIEYLDVNEENNA 649
             GRVCRPL I +     +++ H+K L  G R        ++  ++ G+IE LD  EE   
Sbjct: 417  AGRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEFKWEQLVKSGIIELLDAEEEETV 476

Query: 650  LIAL-------------------YEGDATPDT-----------THIEIEPFTILGVIAGL 679
            +I++                   ++ D  P             TH EI P  ILGV A +
Sbjct: 477  MISMTPEDLENSRLQSAGINPQDHDADHDPAARLKAGITAHTWTHCEIHPSMILGVCASI 536

Query: 680  IPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYD 739
            IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + 
Sbjct: 537  IPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFR 596

Query: 740  KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL 799
            +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   
Sbjct: 597  ELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFE 656

Query: 800  RPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPT 859
            +P R      RM+   +       ++DDGL APG  ++  D+ I K +P+      +   
Sbjct: 657  KPTRD--TTLRMKHGTYDK-----IEDDGLIAPGTNVRGEDIIIGKTAPIPPDSEELGQR 709

Query: 860  GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
             +T +R R      K    E  +VD+V + ++  G   +K  +R TR P++GDKF+SRHG
Sbjct: 710  TRTHTR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHG 766

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G ++E L  K     G     +
Sbjct: 767  QKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDAT 826

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1039
             F +      TVES+S  L + G+   G +++Y G TG  LQA I++GP YYQ+LKHMV 
Sbjct: 827  PFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTYYQRLKHMVD 881

Query: 1040 DKMHARGSGPRVMLTRQP 1057
            DK+H+R  GP  +LTRQP
Sbjct: 882  DKIHSRARGPVQILTRQP 899


>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum viride]
          Length = 938

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 334/963 (34%), Positives = 509/963 (52%), Gaps = 102/963 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK---------GNINASVTSSTETVKSKTVIQMEKG--- 229
            +EKVL+ QE+ + N  I+   KK           I +++   +  + S T+    KG   
Sbjct: 1    SEKVLIAQERSAAN--IVQVFKKPPPSPTPFVAEIRSALEKGSRLISSLTIKLHSKGDNQ 58

Query: 230  ------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEEC 280
                   +   L      IPI +V +A+G+ SD++++  +     D +   +L P IEE 
Sbjct: 59   RGSFGSTVKSTLPYIKADIPIGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEA 118

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFY 340
                I  +E AL+Y+ GK + +  G   + R   A  I++   L ++     +   K F+
Sbjct: 119  --FVIQDREVALDYI-GK-RGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFF 174

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
            +  M+ ++++  L +   DD+D+ G KRL+L+G L++ LF +LFK +  ++ K     + 
Sbjct: 175  LGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVE 234

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
                   F+ +  I   ++T GL+ +L+TGN+ D K+      G++QVL R +F  TL H
Sbjct: 235  N---RKEFNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSH 291

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM +VT      P+
Sbjct: 292  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPI 351

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            +       +E LE    E L +PN+  V  NG+ +G HR P      +R LRR+  I   
Sbjct: 352  VEFMIQRSMEVLE--EYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYE 409

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR-------IKEHHMKELLD-------- 624
            VS+  + + R   I +D GRVCRPL + D  +S        + + H+K L D        
Sbjct: 410  VSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVSSKNKGNLVLNKGHIKRLEDDATLPLGL 469

Query: 625  --------GVRSFDDFLREGLIEYLDVNEENNALIALYEGD------------------- 657
                    G   F   + EG++EY+D  EE   +I +   D                   
Sbjct: 470  DLEEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSG 529

Query: 658  ------------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
                             TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 530  ELNRRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVF 589

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++M
Sbjct: 590  LTNFDQRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIM 649

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N+SS+DRG  R +  + YT   ++   +  ++  +P R     + +++ H +      LD
Sbjct: 650  NQSSIDRGLFRSLFFRSYTDQEKRIGMNVVEQFEKPFRN----DTLKLKHGT---YDKLD 702

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDGL APG  +   D+ I K +P+      +    +  S+ R A    +    E  +VD+
Sbjct: 703  DDGLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSK-RDASTPLRST--ENGIVDQ 759

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V + ++  G   +K  +R T+ P++GDKF+SRHGQKG  G I +QED PF+  GI PDLI
Sbjct: 760  VLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIIYRQEDMPFTREGIVPDLI 819

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+  +IE    K     G     + F +      TV+++S+ L +HG+  
Sbjct: 820  INPHAIPSRMTIAHLIECQLSKVASLSGYEGDATPFTDV-----TVDNVSKLLREHGYQS 874

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+G
Sbjct: 875  RGFEIMYHGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDG 934

Query: 1066 GLR 1068
            GLR
Sbjct: 935  GLR 937


>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
          Length = 927

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/952 (35%), Positives = 518/952 (54%), Gaps = 91/952 (9%)

Query: 182  TEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKVL+ QE+ + N V +        T     I ++V   +  + S  +    KG+    
Sbjct: 1    SEKVLIAQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKGEARGG 60

Query: 235  LNQFVKK--------IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANL 283
             N  +K         IPI++V +A+G+ SD++++  V     D +   ++ P IEE    
Sbjct: 61   YNATIKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTQMLEMMKPCIEEA--F 118

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++ GK + S+ G     R   A  I++   L ++     +   K F++  
Sbjct: 119  VIQDREVALDFI-GK-RGSSQGINKEKRIRYARDIMQKELLPHISQSEGSETRKAFFLGY 176

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ RM++  L +  +DD+D+ G KRL+L+G L++ LF  L+K +  +V K ++  +    
Sbjct: 177  MVHRMLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVET-- 234

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
                F+L+  +  ++IT GL+ +L+TGN+ + K+    + G++QVL R +F  TL H+ R
Sbjct: 235  -GKDFNLTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRR 293

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM+++T      PL+  
Sbjct: 294  TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDF 353

Query: 523  CYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
               L   D+ELL   E   +PN+  V  NG+ +G HR P     V++ +RR G +   VS
Sbjct: 354  ---LSSNDMELLEEYEPQRSPNATKVFVNGVWVGTHRDPLMLHKVVQDVRRQGVVNHEVS 410

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLD--GVRSFDDF 632
            +  + + R   I +D GRVCRPL + D       +G   +++ H+++L D   +   D F
Sbjct: 411  IIRDIRDREFKIFTDAGRVCRPLFVIDNDPRSERRGQLVLQKEHIEKLEDDHALPMEDRF 470

Query: 633  LREGL-----IEYLDVNEENNALIALYEGD--------------------------ATPD 661
              EGL     +EYLD  EE   +I +   D                            P 
Sbjct: 471  GWEGLLFGGTVEYLDAEEEETVMIVMTPEDLDMSRQMQLGYEEPKDEFSAKRVKAPINPH 530

Query: 662  T----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
            T    TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++ 
Sbjct: 531  TAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFAERMDTMA 590

Query: 718  YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
             +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R 
Sbjct: 591  NILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 650

Query: 778  IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
            +  + Y    ++      +   +P R    A  +++ H +      LD+DGL APG  + 
Sbjct: 651  LFYRSYMDQEKRIGMQVVEEFEKPTR----ANTLKLKHGT---YDKLDEDGLVAPGVRVS 703

Query: 838  PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
              D+ I K +P+      +   GQ    +     +      E  +VD+V L ++  G   
Sbjct: 704  GEDIIIGKTAPI---APDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKF 760

Query: 898  IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 957
            +K  +R T+ P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+
Sbjct: 761  VKVRMRTTKIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTI 820

Query: 958  GKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGIT 1016
              +IE    K  VS  R   G A    +   D TVES+S  L ++G+   G +++Y+G T
Sbjct: 821  AHLIECQLSK--VSSLRGFEGDA----TPFTDVTVESVSTLLRQNGYQSRGFEVMYNGYT 874

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            G  L   +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGLR
Sbjct: 875  GRKLVCQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLR 926


>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Melanomma radicans]
          Length = 936

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 327/961 (34%), Positives = 512/961 (53%), Gaps = 100/961 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTETVKSKTVIQMEKGKM---- 231
            +EKVL+ QE+ + N V +   K+G       I ++V   T  + S  +   +   +    
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTRLISSFNIKWTDNSLILKRT 60

Query: 232  -----YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANL 283
                 Y LL      +P+ +V +A+G+ SD++++  +     D +   LL PSIEE +  
Sbjct: 61   PGPFAYALLPYIKADVPMAIVFRALGIVSDEDILNHIVYDREDTQMLELLKPSIEEGSM- 119

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++    +R         R   A  I++  FL ++         K F+   
Sbjct: 120  -IQDRENALDWI---ARRGNTTGTKERRLKFAKEIMQREFLPHISQREGADTRKAFFFGY 175

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  LF  +  +V K +   +    
Sbjct: 176  MIHRLLQCVLGRREEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVFKYLQKCVEN-- 233

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
             +  F++   +    +T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 234  -NQEFNVQMAVKGSVLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRR 292

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +V+   E  P+   
Sbjct: 293  TNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTESTPITDY 352

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                 +E LE    + + NP++  V  NG+ +G H  P    + +++LRR G +   +S+
Sbjct: 353  MSQRQMELLE--EYDPVVNPSAIKVFVNGVWVGTHNNPTQLVNNVQELRRNGTLSYEMSL 410

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISR-------IKEHHMKELLDGVRSFDD---- 631
              + + R   I +D GRV RPL + +  +++       + + H+++LLD  R  D     
Sbjct: 411  IRDIRDREFKIFTDAGRVMRPLFVVENRLNQANVGQLVLNKGHVQKLLDD-REIDTSGMS 469

Query: 632  -------------FLREGLIEYLDVNEENNALIALYEGD--------------ATPDT-- 662
                          L  G+IEYLD  EE  A+I +   D              A PD   
Sbjct: 470  DEDAASVKFGWRGLLHSGVIEYLDAEEEETAMIVMTPEDLEEHRELQLGVTAPAVPDEDR 529

Query: 663  ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 530  HRRIKPKPNPSVRFYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALT 589

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RM++++ +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+
Sbjct: 590  NYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQ 649

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + YT   ++   +  +R  +P R      R++   +       LDDD
Sbjct: 650  SSIDRGLFRSLFYRAYTEQEKRIGVNVLERFEKPTRA--DTLRLKGGTYDK-----LDDD 702

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            G+ APG  +  +D+ I K +P+ T    +   GQ  + +     +      E  +VD+V 
Sbjct: 703  GVVAPGVRVSGDDIIIGKTAPIPTDAKEL---GQKTTMHTKRDVSTPLRSTENGIVDQVL 759

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
              ++  G   +K   R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ PDLI+N
Sbjct: 760  FTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIIN 819

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+  ++E L  K G   G     + F +      TV+ +S  L +HG+   G
Sbjct: 820  PHAIPSRMTIAHLVECLLSKVGSLKGNEGDATPFTDV-----TVDGVSNLLAQHGYQQRG 874

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y+G TG  L+A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGL
Sbjct: 875  FEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGL 934

Query: 1068 R 1068
            R
Sbjct: 935  R 935


>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta vitellina]
          Length = 930

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 334/953 (35%), Positives = 508/953 (53%), Gaps = 90/953 (9%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK-------GNINASVTSSTETVKSKTV--------IQM 226
            +EKV++ QE+ + N V + T            + ++V   +  + S  +          +
Sbjct: 1    SEKVIIAQERSAANTVQVFTKSAPSPLSHVAEVRSAVEKGSRLISSLQIKLLRNPQKTSV 60

Query: 227  EKGKMYLLLNQFVKK-IPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECAN 282
              G++      ++K  I I++V +A+G+ +D+E+++ +  DP   +   LL P IEE   
Sbjct: 61   SNGRLIKATLPYIKDDIDIVIVFRALGVLADREILEHICFDPNDHQMLELLKPCIEEA-- 118

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
              I  ++ AL+Y+ GK  ++T G   + R   A  I++   L +V         K F++ 
Sbjct: 119  FVIQEKDLALDYI-GKRGQTT-GLSRDRRIRHAREIMQKELLPHVSQTEGYESRKAFFLG 176

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  +V + +   +   
Sbjct: 177  YMVHRLLLVALERREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLYKDVYRYMQKCVEN- 235

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
              +  F+L+  +   +IT GL+ +L+TGN+ + K+    + G++QVL R +F  TL H+ 
Sbjct: 236  --NREFNLTLAVKAPTITQGLKYSLATGNWGEQKKAAQAKVGVSQVLNRYTFASTLSHLR 293

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  S WG++CP +TPEG+ACGLVKNLALM++++      PLI 
Sbjct: 294  RTNTPIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLALMSYISVGGPSAPLIE 353

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                 G+E LE  S      PN+  +  NG+ LG HR      + +R LRR   I   ++
Sbjct: 354  FLEEWGMESLEDYSPSS--TPNTTKIFVNGVWLGVHRDAGSLVNTVRNLRRRVDISPEIT 411

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIAD---------------KGISRIKEHH-MKELLDG 625
            +  + ++R + + +D GRV RPL I D               + +  I EH    E+ D 
Sbjct: 412  IVRDIRERELRLFTDAGRVMRPLFIVDNDEHSPRKNFLMLQRQHVETINEHKDNPEIPDH 471

Query: 626  VR-SFDDFLREGLIEYLDVNEENNALIALYEGD--------------------------A 658
             R +F   +  G+IEY+D  EE  A+IA+   D                           
Sbjct: 472  ERWNFSKLIENGIIEYIDAEEEETAMIAMTRKDLESWRKMKEGFQIEEEFDPASRVEPPP 531

Query: 659  TPDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
             P+    TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 532  NPNIAMYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQLRMDT 591

Query: 716  LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
            +  +L YPQ+PL TTR++E + +  L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  
Sbjct: 592  MANILYYPQKPLATTRSMEYLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLF 651

Query: 776  RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
            R +  + Y    +K      +   +P R       +++ H +      L++DGL APG  
Sbjct: 652  RSMFYRCYNDQEKKIGMQVMEEFEKPTR----QTTLRLKHGT---YEKLEEDGLIAPGIR 704

Query: 836  IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
            +   D+ I K +P+      +   GQ  S +     +      E  +VD V + +++ G 
Sbjct: 705  VSGEDIIIGKTAPISPDTQEL---GQRTSHHTKRDVSTPLRSTENGIVDHVVVTTNQEGL 761

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  +R TR P++GDKF+SRHGQKG  G   + ED PFS +G+ PDLI+NPH  PSRM
Sbjct: 762  KFVKVRMRSTRVPQIGDKFASRHGQKGTIGITYRHEDMPFSAQGVVPDLIINPHAIPSRM 821

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TV  +IE    K     G     + F E      TVE +S+ L   GF   G +++Y+G 
Sbjct: 822  TVAHLIECQLSKVSAMGGYEGDATPFTEV-----TVEQVSQQLRNQGFQSRGFEVMYNGH 876

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            TG  L A +F+GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR
Sbjct: 877  TGKKLMAQVFLGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLR 929


>gi|350583868|ref|XP_003481606.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2, partial [Sus
            scrofa]
          Length = 438

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/455 (58%), Positives = 331/455 (72%), Gaps = 20/455 (4%)

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
             I +NQ  R+D+L+YLL YPQ+P++ T+TIEL+ ++KL AGQNATVAVMSYSGYDIEDA+
Sbjct: 1    TIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDAL 60

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            V+NK+SLDRGFGRC+V K      ++Y N T D+++ P      A R  +  H      I
Sbjct: 61   VLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGP--VLDAATRKPIWRHE-----I 113

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LD DG+ +PGE ++   V +NK  P  T+  +         +Y+    TYKG       +
Sbjct: 114  LDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKG--ATDSYI 171

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            ++V + S+      IK L+R TRRPE+GDKFSSRHGQKGVCG IV QED PF + GICPD
Sbjct: 172  EKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPD 231

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +IMNPHGFPSRMTVGK+IELL GKAGV  GRFHYG+AFG        V+ + E LV+HG+
Sbjct: 232  IIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG-----GSKVKDVCEDLVRHGY 286

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
            +Y GKD + SGITG PL+AYI+ GP+YYQKLKHMVLDKMHAR  GPR +LTRQPTEGR+R
Sbjct: 287  NYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSR 346

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC 1123
            +GGLR+GEMERDCLI YGASML+ ERLM+SSD FEV VC  CGLLGY      +G C  C
Sbjct: 347  DGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY------SGWCHYC 400

Query: 1124 KNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            K+  ++SS+++PYACKLL QELQSMNI+PRLKL++
Sbjct: 401  KSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 435


>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
            sulphureus]
          Length = 897

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 313/865 (36%), Positives = 483/865 (55%), Gaps = 67/865 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +    +D +   +L P I++     I  +E AL+++  +
Sbjct: 59   IPIWVVFRALGVISDRDILEHICYDMQDVQMLEMLKPCIDD--GFVIQDREVALDFIGNR 116

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A + +  +
Sbjct: 117  --GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDL 174

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+L+  +  ++
Sbjct: 175  DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLNLAVKHNT 231

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 232  ITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 291

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I      G+E LE    E
Sbjct: 292  QLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE----E 347

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D
Sbjct: 348  NAHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTD 407

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRS------FDDFLREGLIEYLDVNEENNAL 650
             GRVCRPL I +     + + H++ L DG         +D  ++ G+IE LD  EE   +
Sbjct: 408  AGRVCRPLFIVENQQLLLAKKHIQYLNDGQDEEGKPYKWDSLVKGGVIELLDAEEEETVM 467

Query: 651  IALYEGD---------------------------ATPDT---THIEIEPFTILGVIAGLI 680
            I +   D                           AT +T   TH EI P  ILGV A +I
Sbjct: 468  ICMTPEDLENSRMQSNTIDSHMNDGEFDPAARLKATTNTHTWTHCEIHPSMILGVCASII 527

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +
Sbjct: 528  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRE 587

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +
Sbjct: 588  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEK 647

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R      RM+   +       L+DDGL APG  +   D+ I K +P+      +    
Sbjct: 648  PTRE--NTLRMKHGTYDK-----LEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRT 700

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            +  +R R      K    E+ ++D+V + ++  G   +K  +R TR P++GDKF+SRHGQ
Sbjct: 701  RAHTR-RDVSTPLKST--ESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQ 757

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PF+  GI PD+++NPH  PSRMT+G ++E L  K     G     + 
Sbjct: 758  KGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATP 817

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            F +      TVES+S+ L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV D
Sbjct: 818  FTDL-----TVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDD 872

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNG 1065
            K+H+R  GP  +LTRQP EGR+R+G
Sbjct: 873  KIHSRARGPVQILTRQPVEGRSRDG 897


>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon septentrionalis]
          Length = 886

 Score =  538 bits (1385), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 311/854 (36%), Positives = 476/854 (55%), Gaps = 59/854 (6%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 58   IPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREIALDFIGNR- 115

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L ++ +   +   K ++    + R++ A L +  +D
Sbjct: 116  -GTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYRIHRLLLAALERRDLD 174

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+LS  +  ++I
Sbjct: 175  DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLSLAVKHNTI 231

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 232  TNGLKYSLATGNWGDQKKMMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 291

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I      G+E LE    E 
Sbjct: 292  LHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE----EN 347

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D 
Sbjct: 348  AHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDA 407

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSF--DDFLREGLIEYLDVNEENNALIALYE 655
            GRVCRPL I +     I + H+ +L D    +  DD ++ G+IE LD  EE   +I +  
Sbjct: 408  GRVCRPLFIVENQQLTITKKHISQLSDKESGYKWDDLIKGGVIELLDAEEEETVMICMTP 467

Query: 656  GD------------------------ATPDT----THIEIEPFTILGVIAGLIPYPHHNQ 687
             D                         T  T    TH EI P  ILGV A +IP+P HNQ
Sbjct: 468  EDLELARNGIDPLQQDAADIDMSVRLKTAQTAHKFTHCEIHPSMILGVCASIIPFPDHNQ 527

Query: 688  SPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNA 747
            SPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L AGQNA
Sbjct: 528  SPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNA 587

Query: 748  TVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
             VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +P R    
Sbjct: 588  IVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFGKPTRE--T 645

Query: 808  AERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 867
              RM+   +       ++DDGL APG  +   D+ I K +P+      +   GQ   ++ 
Sbjct: 646  TLRMKHGTYDK-----IEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEKL---GQRTRQHT 697

Query: 868  SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 927
                +      E+ ++D+V + ++  G   +K  +R TR P++GDKF+SRHGQKG  G  
Sbjct: 698  RRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIT 757

Query: 928  VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 987
             +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F +    
Sbjct: 758  YRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDL--- 814

Query: 988  ADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGS 1047
              TVES+S+ L K G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK+H+R  
Sbjct: 815  --TVESVSQFLRKEGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRAR 872

Query: 1048 GPRVMLTRQPTEGR 1061
            GP  +LTRQP EGR
Sbjct: 873  GPVQILTRQPVEGR 886


>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
          Length = 937

 Score =  537 bits (1384), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 330/966 (34%), Positives = 518/966 (53%), Gaps = 109/966 (11%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTETVKS--------KTVIQME 227
            +EKVL+ QE+ + N V +   K+G       I ++V   T  + S          +++ +
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTRLISSFNIKWTDNSMIVKRQ 60

Query: 228  KGKM-YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANL 283
             G   Y +L      +P+ +V +A+G+ SD++++  +     D +   LL PSIEE A  
Sbjct: 61   PGPFAYAVLPYIKADVPMAIVFRALGIVSDEDILNHIVYDRNDTQMLELLKPSIEEGAM- 119

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++    +R       + R   A  I++  FL ++         K F+   
Sbjct: 120  -IQERETALDWI---ARRGNQTGTKDKRLKFAREIMQREFLPHISQKEGQDTRKAFFFGY 175

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF----KTMISEVQKTVDIIL 399
            M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  LF    K M + ++K VD   
Sbjct: 176  MIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDMFNYLRKCVDA-- 233

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLG 458
                    F+ +  +    +T GL+ +L+TGN+ D K+    + G++QVL R ++  TL 
Sbjct: 234  -----EQEFNATLALKASIVTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLS 288

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +V+   E  P
Sbjct: 289  HLRRTNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGNESAP 348

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            +I       ++ LE    + + NP +  V  NG  +G H  P     V+++LRR G +  
Sbjct: 349  IIDFMSQRNMDLLE--EYDPIQNPTATKVFVNGTWVGVHSNPSQLVSVVQELRRNGTLSY 406

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR-------IKEHHMKEL-------LD 624
             +S+  + + R   I +D GRV RPL + +   ++       + + H+++L         
Sbjct: 407  EMSLIRDIRDREFKIFTDAGRVMRPLFVVETNYNKPNRGSLVLTKAHIEKLQADKEIDTS 466

Query: 625  GVRSFDD---------FLREGLIEYLDVNEENNALIA-----------LYEGDATPDT-- 662
            G+   D           + +G++EYLD  EE  A+I            L +G  T +   
Sbjct: 467  GMNDEDTAERKYGWFGLIHDGVVEYLDAEEEEGAMIIMSPEDLDEHRDLMQGTQTQEDKE 526

Query: 663  -------------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
                               TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 527  DNDRHKRIKPKPNPSIKTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 586

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RM++++ +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED++
Sbjct: 587  VALTNYALRMETMMNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSV 646

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+SS+DRG  R +  + YT   ++   +  ++  +P R      R++   +       
Sbjct: 647  IMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRQ--DTLRLKGGTYDK----- 699

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDG+ APG  +  +D+ I K +P+      +    Q  ++ R      +    E  +V
Sbjct: 700  LDDDGVVAPGVRVSGDDIIIGKTAPIPGDAQELGQKTQNHTK-RDVSTPLRST--ENGIV 756

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ PD
Sbjct: 757  DQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPD 816

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHG 1002
            LI+NPH  PSRMT+  ++E L  K G   G      A G+ +   D TVES+S+ LV+HG
Sbjct: 817  LIINPHAIPSRMTIAHLVECLLSKVGSLKG------AEGDATPFTDVTVESVSKLLVEHG 870

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  L+A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRA
Sbjct: 871  YQQRGFEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRA 930

Query: 1063 RNGGLR 1068
            R+GGLR
Sbjct: 931  RDGGLR 936


>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
          Length = 884

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 325/916 (35%), Positives = 498/916 (54%), Gaps = 91/916 (9%)

Query: 182  TEKVLLIQEQLSKNRVII----------------DTDKKGNINAS------VTSSTETVK 219
            +EKVL+ QE+++ N V +                  ++KG+ NAS      + +S E   
Sbjct: 1    SEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQNEKGSKNASPLFIKMMRASAERGS 60

Query: 220  SKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPS 276
            S   I+         L     ++PI++V +A+G  +D++V++ +     D     LL PS
Sbjct: 61   SGQCIRAA-------LPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLKPS 113

Query: 277  IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
            IEE     I  Q+ AL+++ GK + +T G+    R   A  IL+   L +V         
Sbjct: 114  IEEA--FVIQDQDVALDFI-GK-RGTTVGATRERRIKYASEILQKELLPHVGTAYKTETR 169

Query: 337  KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVD 396
            K ++   M+ R++ A L +  +DD+D+ G KR++L+G L+S LF  LFK +  +V K   
Sbjct: 170  KSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGVLMSGLFRLLFKKLTKDVAK--- 226

Query: 397  IILSKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFI 454
              L K   SSR F+L+  +  ++IT GL+ +L+TGN+ D K+    R G++QVL R +F 
Sbjct: 227  -YLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAAQARAGVSQVLNRYTFA 285

Query: 455  GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
             TL H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM++++   
Sbjct: 286  STLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGS 345

Query: 515  EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
               PLI       +E+LE LS   + +     V  NG+ +G HR P    + ++++RR+ 
Sbjct: 346  AATPLIMFLEEWAMENLEELSATSIADATKVFV--NGVWIGIHRDPGELINSLKQMRRSV 403

Query: 575  KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSF--DDF 632
             I   VS+  + +++ + + +D GR CRPL + +    R+   H+  + D    F   D 
Sbjct: 404  DISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLNREHIMRIQDTEDDFGWQDM 463

Query: 633  LREGLIEYLDVNEENNALIAL------------------------------YEGDATPDT 662
            + +G++EY+D +EE  A+I +                                G  +   
Sbjct: 464  IADGIVEYVDADEEETAMICMTPEDLAESRMTAQYGAPLQETRDLASRVKSQTGSYSHTW 523

Query: 663  THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
            TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L  +L Y
Sbjct: 524  THCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFQTRMDTLANILYY 583

Query: 723  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
            PQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + 
Sbjct: 584  PQKPLTTTRSMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRT 643

Query: 783  YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
            Y    +K      +   +P R       +++ H +      L+DDGL APG  +  +D+ 
Sbjct: 644  YMDAEKKAGMMFMEEFEKPTRDST----LRLKHGT---YEKLEDDGLIAPGTRVSGDDII 696

Query: 843  INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
            I K +P+      +   GQ  + +     +      ET +VD+V L ++++G   +K  +
Sbjct: 697  IGKTAPIPADSEEL---GQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRV 753

Query: 903  RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIE 962
            R TR P++GDKF+SRHGQKG  G   +QEDFPFS  GI PDLI+NPH  PSRMT+G MIE
Sbjct: 754  RSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIE 813

Query: 963  LLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQA 1022
             L GK     G     + F +      TVE+IS+ L   G+   G +++Y+G TG  L  
Sbjct: 814  CLLGKVSTLTGNEGDATPFTDV-----TVEAISQALQAQGYQSRGFEVMYNGFTGRKLNV 868

Query: 1023 YIFMGPIYYQKLKHMV 1038
             +F+GP YYQ+LKHMV
Sbjct: 869  QVFLGPTYYQRLKHMV 884


>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
          Length = 938

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 332/961 (34%), Positives = 507/961 (52%), Gaps = 98/961 (10%)

Query: 182  TEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQMEKG----- 229
            +EKVL+ QE+ + N V +        T     I +++   +  + S T+    KG     
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPPSPTPYVAEIRSALEKGSRLISSLTIKLHSKGDNQRG 60

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECAN 282
                 +   L      IP+ +V +A+G+ SD++++  +     D +   +L P IEE   
Sbjct: 61   SFGATIKSTLPYIKADIPMGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEA-- 118

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
              I  +E AL+Y+ GK + +  G   + R   A  I++   L ++     +   K F++ 
Sbjct: 119  FVIQDREVALDYI-GK-RGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLG 176

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ ++++  L +   DD+D+ G KRL+L+G L++ LF +LFK +  ++ K     +   
Sbjct: 177  YMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVEN- 235

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
                 F+ +  I   ++T GL+ +L+TGN+ D K+      G++QVL R +F  TL H+ 
Sbjct: 236  --RKEFNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLR 293

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM +VT      P++ 
Sbjct: 294  RTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVE 353

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                  +E LE    E L +PN+  V  NG+ +G HR P      +R LRR+  I   VS
Sbjct: 354  FMIQRSMEVLE--EYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYEVS 411

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLD---------- 624
            +  + + R   I +D GRVCRPL + D       KG   + + H+K L D          
Sbjct: 412  LIRDIRDREFKIFTDAGRVCRPLFVIDNDVNSKNKGNLVLNKGHIKRLEDDTTLPLGLDL 471

Query: 625  ------GVRSFDDFLREGLIEYLDVNEENNALIALYEGD--------------------- 657
                  G   F   + EG++EY+D  EE   +I +   D                     
Sbjct: 472  EEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGEL 531

Query: 658  ----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 532  NRRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 591

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+
Sbjct: 592  NFDQRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQ 651

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + YT   ++   +  ++  +P R     + +++ H +      LDDD
Sbjct: 652  SSIDRGLFRSLFFRSYTDQEKRIGMNVVEQFEKPFRN----DTLKLKHGT---YDKLDDD 704

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVA 887
            GL APG  +   D+ I K +P+      +    +  S+ R A    +    E  +VD+V 
Sbjct: 705  GLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSK-RDASTPLRST--ENGIVDQVL 761

Query: 888  LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
            + ++  G   +K  +R T+ P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+N
Sbjct: 762  ITTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYKQEDMPFTREGIVPDLIIN 821

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNG 1007
            PH  PSRMT+  +IE    K     G     + F +      TV+++S+ L +HG+   G
Sbjct: 822  PHAIPSRMTIAHLIECQLSKVASLSGYEGDATPFTDV-----TVDNVSKLLREHGYQSRG 876

Query: 1008 KDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGL 1067
             +++Y G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GGL
Sbjct: 877  FEIMYHGHTGRKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGL 936

Query: 1068 R 1068
            R
Sbjct: 937  R 937


>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cenococcum geophilum]
          Length = 935

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/966 (34%), Positives = 515/966 (53%), Gaps = 111/966 (11%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNI--NASVTSSTET------------VKSKTVIQME 227
            +EKVL+ QE+ + N V +   K+G I   A + S+ E              +S  + +  
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGSRLISTFNIKWAESSLIAKRA 60

Query: 228  KGKM-YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANL 283
             G   Y +L      +P+ VV +A+G+ SD++++  +     D +   LL PSIEE +  
Sbjct: 61   PGPFAYAILPYIRADVPMSVVFRALGVVSDEDILNHIVYDRNDTQMLELLKPSIEEGSM- 119

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  +E AL+++    KR +     + R   A  I++  FL ++         K F++  
Sbjct: 120  -IQDRENALDWI---AKRGSSTGTKDKRLKYARDIMQREFLPHISQKEGQDTRKAFFLGY 175

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  LF  +  +V K +   +    
Sbjct: 176  MIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFIKLTRDVYKYLQKCVEN-- 233

Query: 404  RSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
             +  F +   +    IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 234  -NQEFSIQMAVKASLITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYASTLSHLRR 292

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +V+   E  P+   
Sbjct: 293  TNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDF 352

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                 +E LE    + + NP++  V  NG+ +G H +P     V+++LRR G +   +S+
Sbjct: 353  MSQRNMELLE--EYDPVVNPSATKVFVNGVWVGVHSQPSQLVTVVQELRRNGTLSYEMSL 410

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIADKGISRI-------------KEHHMKEL-LDGVRS 628
              + + R   I +D GRV RPL + +   ++              K H  KE+ + G+  
Sbjct: 411  IRDIRDREFKIFTDAGRVMRPLFVIENNPTKTNRGSLVLNKTHIEKLHEDKEIDVSGLND 470

Query: 629  FD---------DFLREGLIEYLDVNEENNALIAL-----------------YEGDATPDT 662
             D           L  G++EYLD  EE  A+I +                 Y+    P  
Sbjct: 471  EDAEKAKFGWKGLLHSGVVEYLDAEEEETAMIIMTPEDLEDHHRVSAGTMIYDDGGDPHK 530

Query: 663  -------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
                         TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 531  RIKPKPNPTVKTFTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNY 590

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RM++++ +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS
Sbjct: 591  ALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSS 650

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            +DRG  R +  + YT   ++   +  ++  +P R+     RM+   +       LDDDG+
Sbjct: 651  IDRGLFRSLFYRSYTEQEKRIGVNVLEQFEKPTRS--DTLRMKGGTYDK-----LDDDGV 703

Query: 830  AAPGEIIKPNDVYINKESPLET------RGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
             APG  +  +D+ I K +P+        + +IM       +  RS          E  +V
Sbjct: 704  VAPGVRVSGDDIIIGKTAPIPPDAKELGQKTIMHTKRDVSTPLRST---------ENGIV 754

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ PD
Sbjct: 755  DQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGLTPD 814

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHG 1002
            LI+NPH  PSRMT+  +IE L  K G   G        G+ +   D TVES+S+ L +HG
Sbjct: 815  LIINPHAIPSRMTIAHLIECLLSKVGSLRG------CEGDATPFTDVTVESVSKLLREHG 868

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  + A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRA
Sbjct: 869  YQSRGFEVMYNGHTGKKMVAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRA 928

Query: 1063 RNGGLR 1068
            R+GGLR
Sbjct: 929  RDGGLR 934


>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
          Length = 899

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 312/857 (36%), Positives = 473/857 (55%), Gaps = 66/857 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 68   IPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 125

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +D
Sbjct: 126  -GTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLAALERRELD 184

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LFK +  +V + +   +        F+LS  +   +I
Sbjct: 185  DRDHFGKKRLDLAGPLLAGLFRMLFKKLTRDVYRYLQKCVET---HKEFNLSLAVKHQTI 241

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 242  TNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQ 301

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P+I      G+E LE    E 
Sbjct: 302  LHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLE----EN 357

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D 
Sbjct: 358  AHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDA 417

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRS-------FDDFLREGLIEYLDVNEENNAL 650
            GRVCRPL I +     +++ H+K L  G R        ++  ++ G+IE LD  EE   +
Sbjct: 418  GRVCRPLFIVENQQLALQKKHIKWLNQGYREDDGEEFKWEQLVKNGIIELLDAEEEETVM 477

Query: 651  IALY-------------------EGDATPDT-----------THIEIEPFTILGVIAGLI 680
            I +                    +GD  P             TH EI P  ILGV A +I
Sbjct: 478  ICMTPEDLENSRLQSAGIDPHQNDGDYDPAARLKAGINSHTWTHCEIHPSMILGVCASII 537

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +
Sbjct: 538  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRE 597

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +
Sbjct: 598  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEK 657

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R      RM+   +       ++DDGL APG  +   D+ I K +P+      +    
Sbjct: 658  PTRD--TTLRMKHGTYDK-----IEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRT 710

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            +T +R R      K    E  +VD+V + ++  G   +K  +R TR P++GDKF+SRHGQ
Sbjct: 711  RTHTR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQ 767

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PF+  GI PD+++NPH  PSRMT+G ++E L  K     G     + 
Sbjct: 768  KGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATP 827

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            F +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV D
Sbjct: 828  FTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTYYQRLKHMVDD 882

Query: 1041 KMHARGSGPRVMLTRQP 1057
            K+H+R  GP  +LTRQP
Sbjct: 883  KIHSRARGPVQILTRQP 899


>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
          Length = 889

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 310/861 (36%), Positives = 478/861 (55%), Gaps = 65/861 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV + +G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 54   IPIWVVFRGLGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 111

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +D
Sbjct: 112  -GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELD 170

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+L+  +   +I
Sbjct: 171  DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLALAVKHQTI 227

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 228  TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 287

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I      G+E LE    E 
Sbjct: 288  LHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE----EN 343

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + +++ + + +D 
Sbjct: 344  AHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDA 403

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVR------SFDDFLREGLIEYLDVNEENNALI 651
            GRVCRPL I +     +++ H+K L  G         ++  ++ G+IE LD  EE   +I
Sbjct: 404  GRVCRPLFIVENQQLALQKKHVKWLNSGFNDEGEAFKWEHLVKNGIIELLDAEEEETVMI 463

Query: 652  ALY-------------------EGDATPDT-----------THIEIEPFTILGVIAGLIP 681
            ++                    +GD  P             TH EI P  ILG+ A +IP
Sbjct: 464  SMTPEDLENSRLQQSGLDPHANDGDFDPAARLKAGINAHTWTHCEIHPSMILGICASIIP 523

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 524  FPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFREL 583

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +P
Sbjct: 584  PAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEKP 643

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      RM+   +       L+DDGL APG  +   D+ I K +P+      +    +
Sbjct: 644  MRD--NTLRMKHGTYDK-----LEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRTR 696

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
            T +R R      K    E+ +VD+V + ++  G   +K  +R TR P++GDKF+SRHGQK
Sbjct: 697  THTR-RDVSTPLKST--ESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQK 753

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F
Sbjct: 754  GTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 813

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             +      TVES+S  L + G+   G ++++ G TG  LQA +++GP YYQ+LKHMV DK
Sbjct: 814  TDL-----TVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 868

Query: 1042 MHARGSGPRVMLTRQPTEGRA 1062
            +H+R  GP  +LTRQP EGR+
Sbjct: 869  IHSRARGPVQILTRQPVEGRS 889


>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
          Length = 913

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 317/880 (36%), Positives = 482/880 (54%), Gaps = 86/880 (9%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 59   IPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 116

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V ++  +   K ++   M+ R++ A L +  +D
Sbjct: 117  -GTTTGLNRERRLRYAQEILQKEMLPHVSMNEGSESKKAYFFGYMIHRLLLAALERRDLD 175

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+LS  +  ++I
Sbjct: 176  DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLSLAVKHNTI 232

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 233  TNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 292

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I      G+E LE    E 
Sbjct: 293  LHNTHWGMVCPAETPEGQACGLVKNLSLMSVISVGSLSAPVIEFLEEWGLESLE----EN 348

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + +++ + + +D 
Sbjct: 349  AHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDA 408

Query: 598  GRVCRPLVIADKGISRIKEHHMKELL--------------------------DGVR---- 627
            GRVCRPL I +     I++ H+K L                           DG +    
Sbjct: 409  GRVCRPLFIVENQQLVIQKKHIKMLTEAADKSKQDEEEEREKAARGEPPMDPDGEKKPEY 468

Query: 628  SFDDFLREGLIEYLDVNEENNALIALY----------EGDATPD---------------- 661
            ++D  +R GLIE LD  EE   +I +           E  + P+                
Sbjct: 469  TWDHLVRGGLIELLDAEEEETVMICMTPEDLYNSRTDEAQSDPNEEFDPATRLKARTNAH 528

Query: 662  -TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
              TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L
Sbjct: 529  TWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANIL 588

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
             YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  
Sbjct: 589  YYPQKPLATTRSMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYY 648

Query: 781  KKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            + Y  + +K      +   +P R      RM+   +       L+DDGL APG  +   D
Sbjct: 649  RSYMDLEKKSGVQQLEEFEKPTRE--NTLRMKHGTYDK-----LEDDGLIAPGTNVNGED 701

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKF 900
            + I K +P+      +    +T SR R      K    E+ ++D+V L ++  G   +K 
Sbjct: 702  IIIGKTAPIPPDSEELGQRTKTHSR-RDVSTPLKS--TESGIIDQVLLTTNAEGQKFVKI 758

Query: 901  LIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 960
             +R TR P++GDKF+SRHGQKG  G   +QED PF+  GI PDLI+NPH  PSRMT+G +
Sbjct: 759  RVRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHL 818

Query: 961  IELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPL 1020
            +E L  K     G+    + F +      TVES+S  L + G+   G +++Y G TG  L
Sbjct: 819  VECLLSKVATLLGQEGDATPFTDL-----TVESVSHFLREKGYQSRGLEIMYHGHTGRKL 873

Query: 1021 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEG 1060
            QA +++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EG
Sbjct: 874  QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEG 913


>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
          Length = 936

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 334/963 (34%), Positives = 524/963 (54%), Gaps = 104/963 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGN---INASVTSSTE-------TVKSKTVIQMEKGKM 231
            +EKVL+ QE+ + N V +   KKG+   I A + S+TE       +++ K   + E+ K 
Sbjct: 1    SEKVLIAQERSAANIVQV-FKKKGSPTPIVAEIRSATEKGTRLLSSMQLKLYQKGEQKKG 59

Query: 232  YLLLNQ------FVKK-IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
             +L         ++K  IPI++V +A+G+ SD +++  +     D +   ++ P +EE  
Sbjct: 60   GILTGTIKATLPYIKADIPIVIVFRALGIVSDMQILDCICYDANDTQLREMIKPCLEEA- 118

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               +  +E AL+++ GK      G     R  R   IL+  FL ++     +   K F++
Sbjct: 119  -FVVQDRENALDFI-GKRGNQVGGKEKRIRYAR--DILQKEFLPHISQREGSETRKAFFL 174

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ RM + ML +   DD+D+ G KRL+LSG L++ +F   F  ++ +++    + LS+
Sbjct: 175  GYMINRMCQVMLGRCDEDDRDHFGKKRLDLSGPLMAQVFRLKFTQLVRDMR----VYLSR 230

Query: 402  PSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
                 R F+L+  +  + +T GL   L+TGN+ D K+    + G++QVL R ++  TL H
Sbjct: 231  CIEQGRDFNLTLAVKSNILTSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSH 290

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +V+      P+
Sbjct: 291  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPI 350

Query: 520  ISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            +     +   ++ELL   E  +NP++  V  NG+ +G HR P     V++ LRR G I  
Sbjct: 351  VEF---MNQRNMELLEEYEPKNNPDATKVFVNGVWVGVHRDPSQLVKVVQSLRRNGTISF 407

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDG------ 625
             +S+  + ++R   I +D GRV RPL + +       KG   +   H+ +LL+       
Sbjct: 408  EISLIRDVREREFKIFTDAGRVMRPLFVVNNDPASPTKGQLTLNRSHISQLLNARETDTI 467

Query: 626  ----------VRSFDDFLREGLIEYLDVNEENNALIAL----------------YEGDAT 659
                      +  + + + +G++EYLD  EE  A++ +                YE   T
Sbjct: 468  GLSEEERDGTIYGWKNLISDGVVEYLDAEEEEVAMMVMSPEDLDEHRQMRAGLVYEEPVT 527

Query: 660  ---------PDT-----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI 705
                     P+      TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG  
Sbjct: 528  DPHRRIKSRPNANVRTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIT 587

Query: 706  AFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVM 765
              N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++M
Sbjct: 588  LTNYNVRMDTMANVLYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIM 647

Query: 766  NKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILD 825
            N+SS+DRG  R +  + Y    ++   S  ++  +P R     + M++ H +      LD
Sbjct: 648  NQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPTR----GDTMRMKHGT---YDKLD 700

Query: 826  DDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDR 885
            DDG+ APG  +   D+ I K +P+      +   GQ    +     +      E+ ++D+
Sbjct: 701  DDGIIAPGTRVSGEDIIIGKTAPMAPDAEEL---GQRTKFHIKRDVSTPLRSTESGLIDQ 757

Query: 886  VALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            V L ++  G   +K   R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ PD+I
Sbjct: 758  VLLTTNVEGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLVPDII 817

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            +NPH  PSRMT+  +IE L  K G   G+    + F +      TV  IS+ L +HGF  
Sbjct: 818  INPHAIPSRMTIAHLIECLLSKVGSLRGQEGDATPFTDV-----TVTQISDLLRQHGFQQ 872

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
             G +++Y+G TG  + A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+G
Sbjct: 873  RGFEVMYNGHTGRKMNAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDG 932

Query: 1066 GLR 1068
            GLR
Sbjct: 933  GLR 935


>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis crispa]
          Length = 900

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 312/868 (35%), Positives = 480/868 (55%), Gaps = 71/868 (8%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 59   IPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 116

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L ++ +   +   K ++   M+ R++ A L +  +D
Sbjct: 117  -GTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRDLD 175

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDS 418
            D+D+ G KRL+L+G L++ LF  LF+ +  +V +     L K   S + F+L+  +  ++
Sbjct: 176  DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYR----YLQKCVESHKEFNLNLAVKSNT 231

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 232  ITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 291

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNL+LM  ++      P+I      G+E LE    E
Sbjct: 292  QLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLE----E 347

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D
Sbjct: 348  NAHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTD 407

Query: 597  GGRVCRPLVIADKGISRIKEHHM----------KELLDGVRSFDDFLREGLIEYLDVNEE 646
             GRVCRPL I +     + + H+          K L      +D+ ++ G+IE LD  EE
Sbjct: 408  AGRVCRPLFIVENQQLLLTKKHIDLLNRSAEEEKALPGSGYKWDNLIKSGVIELLDAEEE 467

Query: 647  NNALIAL-----------------YEGDATPD-------------TTHIEIEPFTILGVI 676
               +I +                 +  D   D              TH EI P  ILGV 
Sbjct: 468  ETVMICMTPEDLDNSRLQSSGVDPHANDEDFDPAARLKAVTNAHTWTHCEIHPSMILGVC 527

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E +
Sbjct: 528  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYL 587

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y  + +K      +
Sbjct: 588  RFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLE 647

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
               +P R      RM+   +       L+DDGL APG  +   D+ I K +P+      +
Sbjct: 648  EFEKPTRD--TTLRMKHGTYDK-----LEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEEL 700

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
               GQ    +     +      E+ ++D+V + ++ +G   +K  +R TR P++GDKF+S
Sbjct: 701  ---GQRTRAHTKRDVSTPLKSTESGIIDQVLITTNADGQKFVKIRVRSTRVPQIGDKFAS 757

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G   
Sbjct: 758  RHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEG 817

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F E      TVES+S+ L + G+   G +++Y G TG  LQA +++GP YYQ+LKH
Sbjct: 818  DATPFTEL-----TVESVSQVLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 872

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARN 1064
            MV DK+H+R  GP  +LTRQP EGR+R+
Sbjct: 873  MVDDKIHSRARGPVQILTRQPVEGRSRD 900


>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
            sclerotiorum]
          Length = 938

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 330/964 (34%), Positives = 505/964 (52%), Gaps = 104/964 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKK---------GNINASVTSSTETVKSKTVIQMEKG--- 229
            +EKVL+ QE+ + N  I+   KK           I +++   +  + S  +   +KG   
Sbjct: 1    SEKVLIAQERSAAN--IVQVFKKPANQAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSG 58

Query: 230  ------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEEC 280
                   +   L    + IPI +V +A+G+ SD++++  +     D +   +L P IEE 
Sbjct: 59   RGGFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEA 118

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDVFLANVPVHNNNFRPKCF 339
                I  +E AL+++    KR    S   D+  + A  I++   L ++     +   K F
Sbjct: 119  --FVIQDREVALDFIG---KRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAF 173

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIIL 399
            ++  M+ ++++  L +   DD+D+ G KRL+L+G L++ LF +LF+ + ++V + +   +
Sbjct: 174  FLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCV 233

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLG 458
                 +  F+L+  +   +IT GL+ +L+TGN+ D K+      G++QVL R +F  TL 
Sbjct: 234  EN---NREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLS 290

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM +VT      P
Sbjct: 291  HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDP 350

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            ++       +E LE    E L  PN+  V  NG+ +G HR P      ++ LRR+  I  
Sbjct: 351  IVEFMIQRNMEVLE--EYEPLRAPNATKVFVNGVWVGVHRDPAHLVKCVQDLRRSHLISH 408

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLD------- 624
             VS+    + R   I +D GRVCRPL++ D       KG   + + H++ L D       
Sbjct: 409  EVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNKDHIRRLEDDQSLPSN 468

Query: 625  ---------GVRSFDDFLREGLIEYLDVNEENNALIALYEGD------------ATPD-- 661
                     G   F   + +G++EYLD  EE   +I +   D              PD  
Sbjct: 469  MDKDEKVHHGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQLQAGYQIRPDDS 528

Query: 662  -----------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGN 704
                              TH EI P  ILG+ A +IP+P HNQSPRN YQ AMGKQAMG 
Sbjct: 529  GDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGV 588

Query: 705  IAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIV 764
               N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+M YSGY+ ED+++
Sbjct: 589  FLTNFDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVI 648

Query: 765  MNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLIL 824
            MN+SS+DRG  R +  + YT   ++   +  ++  +P R+     +             L
Sbjct: 649  MNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGTYEK-------L 701

Query: 825  DDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVD 884
            DDDG+ APG  +   D+ I K +P+      M   GQ    +     +      E+ +VD
Sbjct: 702  DDDGIVAPGVRVTGADIIIGKTAPIAPDSEEM---GQRTKAHVKRDASTPLRSTESGLVD 758

Query: 885  RVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDL 944
            +V L ++  G   +K  +R T+ P++GDKF+SRHGQKG  G    Q+D PF+  G+ PDL
Sbjct: 759  QVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDL 818

Query: 945  IMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFS 1004
            I+NPH  PSRMT+  +IE    K     G     + F E      TV+S+S+ L  HG+ 
Sbjct: 819  IINPHAIPSRMTIAHLIECQLSKVSSLRGLEGDATPFTEV-----TVDSVSKLLRAHGYH 873

Query: 1005 YNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARN 1064
              G +++Y G TG  + A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+
Sbjct: 874  SRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARD 933

Query: 1065 GGLR 1068
            GGLR
Sbjct: 934  GGLR 937


>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 332/896 (37%), Positives = 483/896 (53%), Gaps = 71/896 (7%)

Query: 101 LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++      +G   E+ T   E   V IG++PIMLRS  C L
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTL 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
           Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVR 124

Query: 210 SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
           S+  S     S   ++M           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125 SMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260 VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
           ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A 
Sbjct: 185 LEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKYAK 240

Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            IL+   L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377 SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
             LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                   R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +T
Sbjct: 354 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAET 413

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
           PEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P +  +  NG 
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFVNGC 471

Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +G HR P+     +R+LRR   +   V V  + + + + + +D GR  RPL I +K   
Sbjct: 472 WVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531

Query: 613 RIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--------- 657
            IK+  ++ L       DG   + D + +G IEY+D  EE   +I++   D         
Sbjct: 532 LIKKKDIRALQQRESPDDG--GWHDLVAKGFIEYVDTEEEETTMISMTINDLITARINPE 589

Query: 658 -ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
            A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590 EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 649

Query: 716 LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
           L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776 RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
           R +  + Y    +K      +   RP+R       M + H S      LDDDGLA PG  
Sbjct: 710 RSLFFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTR 762

Query: 836 IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
           +   DV I K +P+    S     GQ  SRY     +      E+ +VD+V L ++ +G 
Sbjct: 763 VSGEDVIIGKTTPIAQEES----QGQASSRYTRRDHSTSLRHSESGMVDQVLLTTNADGL 818

Query: 896 LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
             +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 819 RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 874


>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
            boomerangus]
          Length = 906

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 325/936 (34%), Positives = 502/936 (53%), Gaps = 93/936 (9%)

Query: 183  EKVLLIQEQLSKNRVIIDTDKKGNI-----NASVTSSTET-----------VKSKTVIQM 226
            EKV++ QE+++ N V +    K NI      A + S+ E            + +K V + 
Sbjct: 2    EKVMIAQERIATNTVFV---FKKNIPYPHYTAEIRSAAEKASKQASPLFLKITNKGVSKG 58

Query: 227  EKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANL 283
              G++   +      IP++VV +A+GM + +++++ +   G D +      PSIEE    
Sbjct: 59   LGGEIQASIPYIRSDIPVVVVFRALGMVAVKDILEHICYDGNDHQMLEKFKPSIEEA--F 116

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  ++ AL+++ GK + +  G   + R      IL+  FL +V    +N   K F+   
Sbjct: 117  VIQDKDVALDFI-GK-RGTAVGVSKDKRIKYGAEILQKEFLPHVGTQAHNETRKSFFFGY 174

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF----KTMISEVQKTVDIIL 399
            M+ R++   L +   DD+D+ G KR++L+G L+++LF +LF    K M   +QK +D   
Sbjct: 175  MVHRLLLCALERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCID--- 231

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLG 458
                    F+L+  I  ++IT GL+ +L+TGN+ D K+    R G++QVL R +F  TL 
Sbjct: 232  ----SKREFNLTMAIKSNTITAGLKYSLATGNWGDQKKSMQSRTGVSQVLNRYTFASTLS 287

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM H+T   E GP
Sbjct: 288  HLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITIGAESGP 347

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            L+       +E+LE L+   +  P++  +  NG+ +G HR        + ++RR   +  
Sbjct: 348  LLLFLEEWAMENLEELTASNI--PDATKIFVNGVWVGIHRDANRLVSTLLQMRRRLDLSY 405

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFDD 631
             +S+  + +++ + + +D GRV RPL + +       K I R  E       + VR + D
Sbjct: 406  ELSIVRDVREKELRLFTDAGRVSRPLFVVNNLRLNLTKDIVRAIEARDVNDPEAVR-WHD 464

Query: 632  FLREGLIEYLDVNEENNALIAL-----------YEGDATPDT------------------ 662
             + EG++EYLD  EE  A+I +           +E    P                    
Sbjct: 465  LMVEGIVEYLDAEEEETAMICMTSAELKESRMFHEHGIEPQAEDDLASRIRSRRNVQIHT 524

Query: 663  -THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721
             TH EI P  ILG+ A ++P+P HNQSPRNTYQ AMGKQAMG +  +   RMD+L  +L 
Sbjct: 525  WTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGIMLTSYQLRMDTLSNILY 584

Query: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781
            YPQ+PL TT ++E + +  L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  +
Sbjct: 585  YPQKPLATTHSMEYIKFSDLPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYR 644

Query: 782  KYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV 841
             Y     +    T     RP R     E    + H       L+DDGL APG  +  +D+
Sbjct: 645  TYQDEEDRQGMKTMGTFERPTR-----ETTLRLKHGTYEK--LEDDGLIAPGTRVTGDDI 697

Query: 842  YINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 901
             I K +P+      +     T ++  +++        ET +VD+V L ++ +G   +K  
Sbjct: 698  IIGKTTPIPIDSIELGQRTVTHTKLDASKPLR---STETGIVDQVMLTTNGDGFKFVKVR 754

Query: 902  IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 961
            +R TR P++GDKF+SRHGQKG  G   + ED PF+  G+ PDLI+NPH  PSRMT+G ++
Sbjct: 755  VRSTRVPQIGDKFASRHGQKGTIGITYRTEDMPFTSEGVVPDLIINPHAIPSRMTIGHLV 814

Query: 962  ELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQ 1021
            E L  K     G     + F +      TVE+IS  L   G+   G +++Y+G TG  LQ
Sbjct: 815  ECLLSKLATLIGTTADATPFTDV-----TVEAISRELFSLGYQSRGFEVMYNGHTGRKLQ 869

Query: 1022 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP 1057
            A +F+GP YYQ+LKHMV DK+H+R  GP  +LT QP
Sbjct: 870  AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTSQP 905


>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma tsugae]
          Length = 883

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 311/856 (36%), Positives = 474/856 (55%), Gaps = 66/856 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +    +D +   +L P I+E     I  +E AL+Y+  +
Sbjct: 54   IPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDE--GFVIQDREIALDYIGNR 111

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +
Sbjct: 112  --GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDL 169

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F++S  +  ++
Sbjct: 170  DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNISLAVKHNT 226

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 227  ITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 286

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I      G+E LE    E
Sbjct: 287  QLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLE----E 342

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H       +F NG+ +G HR P      +RKLRR   I   VSV  + ++R + + +D
Sbjct: 343  NAHASTPCTKVFVNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTD 402

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVR------SFDDFLREGLIEYLDVNEENNAL 650
             GRVCRPL I +     I++ H++ L+          ++D  L++G+IE LD  EE   +
Sbjct: 403  AGRVCRPLFIVENQQLLIQKKHIESLVRAKEDPTLSYNWDSLLKDGVIELLDAEEEETVM 462

Query: 651  IALYEGD-----------------------------ATPDTTHIEIEPFTILGVIAGLIP 681
            I +   D                             +    TH EI P  ILGV A +IP
Sbjct: 463  ICMTPEDLENSRLQAAGIDPHADEENDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIP 522

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 523  FPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFREL 582

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +P
Sbjct: 583  PAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKP 642

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      RM+   +       L+DDGL APG  +   D+ I K +P+      +    +
Sbjct: 643  TRD--TTLRMKHGTYDK-----LEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTR 695

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
            T ++ R      K    E  +VD+V + ++  G   +K  +R TR P++GDKF+SRHGQK
Sbjct: 696  THTK-RDVSTPLKS--TEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQK 752

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F
Sbjct: 753  GTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEGDATPF 812

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             +      TVES+S+ L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK
Sbjct: 813  TDL-----TVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 867

Query: 1042 MHARGSGPRVMLTRQP 1057
            +H+R  GP  +LTRQP
Sbjct: 868  IHSRARGPVQILTRQP 883


>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
          Length = 942

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 329/965 (34%), Positives = 513/965 (53%), Gaps = 103/965 (10%)

Query: 183  EKVLLIQEQLSKNRVIIDTDKK------GNINASVTSSTETVKSKTVIQMEKGKM----- 231
            +KVL+ QE+ + N V +   ++        I ++V   +  + S T+   EK ++     
Sbjct: 1    DKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKEGQ 60

Query: 232  ----YLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLD 284
                Y  L      +PI +V +A+G+ SD++++  +  D   + L+    PSIEE  ++ 
Sbjct: 61   GACLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDTQLMEAIRPSIEE--SVL 118

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +  AL+++  +    + G    +R   A  I++  FL ++     +   K F++  M
Sbjct: 119  IQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGYM 178

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R+++  L +   DD+D+ G KRL+L+G L++ LF  LF  +  +V       L K   
Sbjct: 179  IYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVFS----YLKKCVE 234

Query: 405  SSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
            + R F L   + + +IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 235  AGRPFSLQSAVKQGTITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYSSTLSHLRR 294

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +VT   +  P+   
Sbjct: 295  TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQDF 354

Query: 523  CYCLGVEDLELLSGEELH-NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
               +   ++ELL   E + +P++  +  NG+ +G HR P     V++KLRR G +   +S
Sbjct: 355  ---MTQRNMELLEEYEPNVSPHATKIFINGVWVGVHRDPTQLVSVVKKLRRDGTLSPEMS 411

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKEL-------LDGVR 627
            +  + + R   I +D GRVCRPL I D       KG   +   H+ +L       + G+ 
Sbjct: 412  LIRDVRDREFKIFTDAGRVCRPLFIIDDDPFSPNKGNLALTREHIDKLEADQEIDVSGLS 471

Query: 628  S---------FDDFLREGLIEYLDVNEENNALIALYEGD--------------------- 657
                      +   L  G++EY+D  EE  A+I +   D                     
Sbjct: 472  DEERQEKRYGWQGLLHSGVVEYMDAEEEEVAMIVMTPDDLRAHHRARQGIIDEDDEETKR 531

Query: 658  --------------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
                          +    TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 532  NRDPHERVVPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 591

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RMD+++ +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED++
Sbjct: 592  VCLTNYELRMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSV 651

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+SS+DRG  R +  + YT   +K   +  ++  +P R+    + M++ H +      
Sbjct: 652  IMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRS----DTMRLKHGT---YDK 704

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDG+ APG  +   D+ I K +P+      +   GQ    +     +      E  +V
Sbjct: 705  LDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEEL---GQRTKMHIKRDVSTPLRSTENGIV 761

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D V L ++ +G   +K   R T+ P++GDKF+SRHGQKG  G   + ED PF+  G+ PD
Sbjct: 762  DSVLLTTNSDGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPD 821

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            LI+NPH  PSRMT+  +IE L  K G   G     + F +      TV  +S  L +HG+
Sbjct: 822  LIINPHAIPSRMTIAHLIECLLSKVGALRGXEGDATPFTDV-----TVXQVSSLLREHGY 876

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR
Sbjct: 877  QSRGFEIMYNGHTGKKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRAR 936

Query: 1064 NGGLR 1068
            +GGLR
Sbjct: 937  DGGLR 941


>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
          Length = 875

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 334/899 (37%), Positives = 483/899 (53%), Gaps = 76/899 (8%)

Query: 101 LNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C L
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
           Y   E +L  LGECPLD GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65  YHNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 210 SVTSSTETVKSKTVIQM--EKGKMYLLLNQFVK--------KIPIMVVMKAMGMESDQEV 259
           S+  +     S   ++M    G       Q+++        +IPI++V +A+G  +D+++
Sbjct: 125 SMAENQNRPPSTMFVRMLSRAGAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260 VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
           ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + +T G     R   A 
Sbjct: 185 LEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGATVGVTKEKRIKYAR 240

Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            IL+   L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377 SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
             LF  LF+ +  +V    QK VD       +    +L   I   +IT GL+ +L+TGN+
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVD-------QGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                   R G++QVL RL++  TL H+ R++    +  K++ PR L  SQWGM+CP +T
Sbjct: 354 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPTGREGKLAKPRQLHNSQWGMMCPAET 413

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN---PNSFLVIF 549
           PEG+ACGLVKNLALM ++T      P++        E+ E    EE+     P +  +  
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFE----EEISPAVIPQAAKIFV 469

Query: 550 NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
           NG  +G HR P      +R+LRR   +   V V  +   + + I +D GR  RPL I DK
Sbjct: 470 NGCWVGIHRDPDLLVKTLRQLRRRVDVNTEVGVVRDIHLKELRIYTDYGRCSRPLFIVDK 529

Query: 610 GISRIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD------ 657
               IK+  ++ L       DG   + D + +G IEY+D  EE   +I++   D      
Sbjct: 530 QRLLIKKRDIRALQLRETPEDG--GWHDLVAKGFIEYIDTEEEETTMISMTINDLITARV 587

Query: 658 ----ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
               A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 588 NPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFR 647

Query: 713 MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
           MD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DR
Sbjct: 648 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 707

Query: 773 GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
           GF R +  + Y    +K      +   RPDR+      M + H S      LDDDGLA P
Sbjct: 708 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNT----MGMRHGS---YDKLDDDGLAPP 760

Query: 833 GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
           G  +   DV I K +PL    +     G   +RY     +      E  +VD+V L ++ 
Sbjct: 761 GTKVSGEDVIIGKTTPLAPDEA----QGPNAARYTRRDHSISLRHSENGIVDQVLLTTNA 816

Query: 893 NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
           +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 817 DGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 875


>gi|6606125|gb|AAF19075.1|AF107803_1 DNA-dependent RNA polymerase II RPB140 [Curvularia brachyspora]
          Length = 942

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 322/966 (33%), Positives = 511/966 (52%), Gaps = 104/966 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTETVKSKTVIQMEK-----GK 230
            +EKVL+ QE+ + N V +   K+G       I ++V   T  + S  +   E      GK
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGK 60

Query: 231  ------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                   Y  L      +P+ +V +A+G+ SD+E++  +     D +   LL PSIEE +
Sbjct: 61   RIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGS 120

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               +  +E AL+++    KR       + R   A  I++  FL ++         K ++ 
Sbjct: 121  V--VQDRETALDFI---AKRGANSGTKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFF 175

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  LF  +  +V K +   +  
Sbjct: 176  GYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVEN 235

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHM 460
               +  F++   +    IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+
Sbjct: 236  ---NQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHL 292

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  S WG++CP +TPEG+ACGLVKNL+LM +V+   +  P+I
Sbjct: 293  RRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPII 352

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                   ++ LE    ++  NP++  V  NG+ +G H   +    V+++LRR G +   +
Sbjct: 353  DFMTQRNMQLLE--EYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEM 410

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM---KELLDGVRS--------- 628
            S+  + + R   I +D GRV RPL + +  I +   +H+   KE+ + +++         
Sbjct: 411  SLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEISNKLKAEQSETSTRQ 470

Query: 629  -------------FDDFLREGLIEYLDVNEENNALIALYEGD------------------ 657
                         +   +++G++EYLD  EE  A+I     D                  
Sbjct: 471  GWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEWREMKMGLPAAERST 530

Query: 658  ----------ATPDT-----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
                        PD      TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 531  EGKDRLRRLKPLPDPRIHSYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 590

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RM++++ +L YPQ+PL TTR++E + + +L AGQNA VA+ +Y GY+ ED+
Sbjct: 591  GVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDS 650

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            ++MN+SS+DRG  R +  + YT   ++   +  ++  +P R      R++   +      
Sbjct: 651  VIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA--DTLRLKGGTYDK---- 704

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDG+ APG  +  +D+ I K +P+      +   GQ  + +     +      E  +
Sbjct: 705  -LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEL---GQKTTMHTKRDVSTPLRSTENGI 760

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ P
Sbjct: 761  VDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTP 820

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            DLI+NPH  PSRMT+  ++E L  K G   G+    + F +      TV+ IS+ L   G
Sbjct: 821  DLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDV-----TVDQISQLLEDAG 875

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  L+  IF+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRA
Sbjct: 876  YQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRA 935

Query: 1063 RNGGLR 1068
            R+GGLR
Sbjct: 936  RDGGLR 941


>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
            cucurbitacearum]
          Length = 940

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 322/965 (33%), Positives = 508/965 (52%), Gaps = 104/965 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTETVKSKTVIQMEK----GK- 230
            +EKVL+ QE+ + N V +   K+G       I ++V   T  + S  +   E     GK 
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLASGKR 60

Query: 231  -----MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECAN 282
                  Y  L      +P+ +V +++G+ SD+E++  +     D +   LL PSIEE + 
Sbjct: 61   MPGPFAYATLPYIKADVPMAIVFRSLGIVSDEEILGHIVYDRTDTQMLELLKPSIEEGSV 120

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
              +  +E AL+++    +R       + R   A  I++  FL ++         K ++  
Sbjct: 121  --VQDRESALDFI---ARRGATQGTKDRRLKFARDIMQREFLPHISQREGQDTRKAYFFG 175

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ RM++ +L +   DD+D+ G KRL+L+G L++ LF  LF  +  +V K +   +   
Sbjct: 176  YMIHRMLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVEN- 234

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
              +S F++   +    IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ 
Sbjct: 235  --NSDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLR 292

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  S WG++CP +TPEG+ACGLVKNL+LM +V+   +  P+  
Sbjct: 293  RTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIAD 352

Query: 522  LCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                +G  +++LL   ++  NP++  V  NG+ +G H   +     +++LRR G +   +
Sbjct: 353  F---MGKRNMQLLEEYDQNQNPDATKVFVNGVWVGVHNNAQQLVSTVQELRRNGTLSYEM 409

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM--------------------- 619
            S+  + + R   I +D GRV RPL +    +++   +H+                     
Sbjct: 410  SLIRDIRDREFKIFTDAGRVMRPLFVVQNDVTKDDRNHLVFNQDHYNKLVQEQQAQATAG 469

Query: 620  ---KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD------------------- 657
               +E       +   +++G+IEYLD  EE  A+I +   D                   
Sbjct: 470  IGEEEKTALTYGWKGLIQDGVIEYLDAEEEETAMIVMSPEDLGEWRDMKQGIPQDARNPQ 529

Query: 658  ---------ATPDT-----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
                       PD      TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 530  GKDRLARIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG 589

Query: 704  NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
                N   RM++++ +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED++
Sbjct: 590  VALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSV 649

Query: 764  VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLI 823
            +MN+SS+DRG  R +  + YT   ++   +  ++  +P R      R++   +       
Sbjct: 650  IMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA--DTLRLKGGTYDK----- 702

Query: 824  LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVV 883
            LDDDG+ APG  +  +D+ I K +P+      M   GQ  S +     +      E  +V
Sbjct: 703  LDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEM---GQKTSLHTKRDVSTPLRSTENGIV 759

Query: 884  DRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
            D+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  G   + ED PF+  G+ PD
Sbjct: 760  DQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRDGVTPD 819

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            L++NPH  PSRMT+  ++E L  K G   GR    + F +      TV+ ISE L   G+
Sbjct: 820  LVINPHAIPSRMTIAHLVECLLSKVGAITGREGDATPFTDV-----TVDQISELLEDAGY 874

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
               G +++Y+G TG  ++  IF+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR
Sbjct: 875  QKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 934

Query: 1064 NGGLR 1068
            +GGLR
Sbjct: 935  DGGLR 939


>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 331/894 (37%), Positives = 480/894 (53%), Gaps = 73/894 (8%)

Query: 101 LNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C L
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSYCTL 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
           Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVR 124

Query: 210 SVTSSTETVKSKTVIQM-----EKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
           S+  S     S   ++M      KG +   L     +IPI++V +A+G  +D+++++ + 
Sbjct: 125 SMAESQNRPPSSMFVRMLSRTSAKGYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 184

Query: 265 ---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
               D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A  IL+ 
Sbjct: 185 YDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKYAKEILQK 240

Query: 322 VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+  LF 
Sbjct: 241 EMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFR 300

Query: 382 DLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437
            LF+ +  +V    QK VD            +L   I    IT GL+ +L+TGN+     
Sbjct: 301 MLFRKLTRDVRGYVQKCVD-------NGKDVNLQFAIKAKPITSGLKYSLATGNWGQANA 353

Query: 438 KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
              R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +TPEG+A
Sbjct: 354 AGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQA 413

Query: 498 CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
           CGLVKNLALM ++T      P++        E+ E +S   +  P +  +  NG  +G H
Sbjct: 414 CGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFVNGCWVGIH 471

Query: 558 RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
           R P      +R+LRR   +   V V  + + + + + +D GR  RPL I +K    IK+ 
Sbjct: 472 RNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 531

Query: 618 HMKELLDGVR----SFDDFLREGLIEYLDVNEENNALIALYEGD----------ATPDT- 662
            ++ L          + D + +G IEY+D  EE   +I++   D          A  DT 
Sbjct: 532 DIRALQQRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSDTY 591

Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L Y
Sbjct: 592 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 651

Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
           PQ+PL+TTR +E + + +L AG N+ VA+  YSGY+ ED+++MN+SS+DRGF R +  + 
Sbjct: 652 PQKPLVTTRAMEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 711

Query: 783 YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
           Y    +K      +   RP+R       M + H S      LDDDGLA PG  +   DV 
Sbjct: 712 YRDEEKKMGTLIKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTRVSGEDVI 764

Query: 843 INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD-----GETCVVDRVALCSDKNGDLC 897
           I K SP+           Q D++  S+R T +         E+ +VD+V L ++ +G   
Sbjct: 765 IGKTSPI----------AQDDAQGVSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 814

Query: 898 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
           +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 815 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 868


>gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Mycosphaerella punctiformis]
          Length = 935

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 338/966 (34%), Positives = 510/966 (52%), Gaps = 111/966 (11%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGN------INASVTSSTETVKSKTVIQMEKGKMYLLL 235
            +EKVL+ QE+ + N V +   K  N      + ++V   T  + S TV    +       
Sbjct: 1    SEKVLIAQERSAANIVQVFKKKGTNTPVMAELRSAVERGTRLISSTTVKLYNQAVNANNP 60

Query: 236  NQFVK--------KIPIMVVMKAMGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDI 285
             Q +K         IPI ++ +A+G+ SD++++  +    D +   +L P +EE     +
Sbjct: 61   GQTIKGSLPYIKTDIPIAIIFRALGVVSDEDILNHIVNKEDTQMLEMLKPCLEEA--FVV 118

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGR-AFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
              ++ AL++    + R    +   DR  R A  I++  FL ++     +   K F++  M
Sbjct: 119  QDRDNALDF----IGRRGQQTGTKDRRIRYARDIMQKEFLPHISQEEGSETKKAFFLGYM 174

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + RM++  L +   DD+D+ G KRL+L+G L++ +F   F  ++ E++    + L +   
Sbjct: 175  VNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKFVQLVKEMK----MYLHRCVE 230

Query: 405  SSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
              R F+++  I  + +T GL   L+TGN+ D K+    + G++QVL R ++  TL H+ R
Sbjct: 231  GGRDFNITLAIKTNILTSGLRYCLATGNWGDQKKASSAKAGVSQVLNRYTYASTLSHLRR 290

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +VT      PL   
Sbjct: 291  TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPGEPLTDF 350

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                G++ LE    + +  P S  V  NG  +G H+      + +R LRR G +   V++
Sbjct: 351  MRQRGMDLLE--EYDPVLEPKSTKVFINGTWVGVHKNAGQLTETLRSLRRKGLLSFEVTI 408

Query: 583  FVNEKQRCVYIASDGGRVCRPLVI-------ADKGISRIKEHHMKEL---------LDGV 626
              + ++R + + +D GRVCRPL +       A++G   +++  + +L         L G+
Sbjct: 409  IRDVREREIRVFTDAGRVCRPLFVVDNKPDAAERGSLVLRQDQVAKLQQDQENAASLRGI 468

Query: 627  RSFDDFLR---------EGLIEYLDVNEENNALI-----------ALYEGDATPD----- 661
               D  L          EG++EYLD  EE  A+I           AL  G    D     
Sbjct: 469  SEEDKALHSYGWMGLVNEGVVEYLDAEEEETAMIIMTPEDLDEHRALRSGAEYDDPKSDP 528

Query: 662  --------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
                           TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    
Sbjct: 529  HRRIKPKPNMQVHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVTLT 588

Query: 708  NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
            N   RMD++  +L YPQ+PL TTR++E + +  L AGQNA VA+ SYSGY+ ED+++MN+
Sbjct: 589  NYNVRMDTMANVLYYPQKPLATTRSMEFLKFRDLPAGQNAIVAIASYSGYNQEDSVIMNQ 648

Query: 768  SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDD 827
            SS+DRG  R +  + Y    ++   S  +   RP+R    A  M++ H S      LDDD
Sbjct: 649  SSIDRGLFRSLFYRAYMDQEKRVGMSVVESFERPER----AATMKMKHGS---YDKLDDD 701

Query: 828  GLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG-----PDGETCV 882
            G+ +PG  +   D+ I K +P       M+P  + +   R+  Q  +         E  V
Sbjct: 702  GIVSPGCRVSGGDMLIGKTAP-------MAPDAE-ELGMRTKMQVKRDVSTPLRSTENGV 753

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V L ++  G    K   R T+ P++GDKF+SRHGQKG  G   +QED PFS  G+ P
Sbjct: 754  VDQVLLTTNTEGLRFAKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLVP 813

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            D+I+NPH  PSRMT+  +IE L  K G   G+    + F +      TV SIS  L  HG
Sbjct: 814  DIIINPHAIPSRMTIAHLIECLLSKVGALQGQEGDATPFTDV-----TVTSISMILADHG 868

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            F   G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRA
Sbjct: 869  FQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQVLTRQPVEGRA 928

Query: 1063 RNGGLR 1068
            R+GGLR
Sbjct: 929  RDGGLR 934


>gi|6606127|gb|AAF19076.1|AF107804_1 DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
          Length = 942

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 320/966 (33%), Positives = 508/966 (52%), Gaps = 104/966 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG------NINASVTSSTETVKSKTVIQMEK-----GK 230
            +EKVL+ QE+ + N V +   K+G       I ++V   T  + S  +   E      GK
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGHGK 60

Query: 231  ------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
                   Y  L      +P+ +V +A+G+ SD+E++  +     D +   LL PSIEE +
Sbjct: 61   RIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGS 120

Query: 282  NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
               +  +E AL+++    KR       + R   A  I++  FL ++         K ++ 
Sbjct: 121  V--VQDRETALDFI---AKRGANSGTKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFF 175

Query: 342  AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
              M+ R+++ +L +   DD+D+ G KRL+L+G L++ LF  LF  +  +V K +   +  
Sbjct: 176  GYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVEN 235

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHM 460
               +  F++   +    IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+
Sbjct: 236  ---NQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHL 292

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             R +    +  K++ PR L  S WG++CP +TPEG+ACGLVKNL+LM +V+   +  P+I
Sbjct: 293  RRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPII 352

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
                   ++ LE    ++  NP++  V  NG+ +G H   +    V+++LRR G +   +
Sbjct: 353  DFMTQRNMQLLE--EYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEM 410

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM--------------------- 619
            S+  + + R   I +D GRV RPL + +    R   + +                     
Sbjct: 411  SLIRDIRDREFKIFTDAGRVMRPLFVVENDFRRENRNQLVFTKAISNKLKAEQQETSTRQ 470

Query: 620  ----KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD------------------ 657
                +E+ +    +   +++G++EYLD  EE  A+I     D                  
Sbjct: 471  GWSQEEVENATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEWREMKMGLPAVERST 530

Query: 658  ----------ATPDT-----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
                        PD      TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 531  EGKDRLRRLKPAPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 590

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RM++++ +L YPQ+PL TTR++E + + +L AGQNA VA+ +Y GY+ ED+
Sbjct: 591  GVALTNFALRMETMMNVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDS 650

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            ++MN+SS+DRG  R +  + YT   ++   +  ++  +P R      R++   +      
Sbjct: 651  VIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFEKPTRA--DTLRLKGGTYDK---- 704

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDG+ APG  +  +D+ I K +P+ T    +   GQ  + +     +      E  +
Sbjct: 705  -LDDDGVVAPGVRVSGDDIIIGKTAPIATDAQEL---GQKTTLHTKRDVSTPLRSTENGI 760

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            VD+V   ++  G   +K   R T+ P++GDKF+SRHGQKG  G   +QED PFS+ G+ P
Sbjct: 761  VDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSKEGLTP 820

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            DLI+NPH  PSRMT+  ++E L  K G   G+    + F +      TV+ +S+ L   G
Sbjct: 821  DLIINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTDV-----TVDQVSQLLEDAG 875

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            +   G +++Y+G TG  ++  IF+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRA
Sbjct: 876  YQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRA 935

Query: 1063 RNGGLR 1068
            R+GGLR
Sbjct: 936  RDGGLR 941


>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
            schweinitzii]
          Length = 887

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 307/860 (35%), Positives = 475/860 (55%), Gaps = 65/860 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI V+ +A+G+ SD+++++ +    +D +   LL P I++     I  +E AL+++  +
Sbjct: 54   IPIWVLFRALGVISDRDILEHICYDMQDAQMLELLKPCIDD--GFVIQDREVALDFIGNR 111

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L ++ +   +   K ++   M+ R++ A + ++ +
Sbjct: 112  --GTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMVHRLLLAAMEREDL 169

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L+S LF  LF+ +  +V + +   +        F+L+  +  ++
Sbjct: 170  DDRDHFGKKRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVET---HKEFNLNLAVKHNT 226

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D KR    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 227  ITNGLKYSLATGNWGDQKRTMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 286

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNL+LM+ +T      P+I      G+E LE    E
Sbjct: 287  QLHNTHWGMVCPAETPEGQACGLVKNLSLMSCITVGTLSAPVIEFLEEWGLESLE----E 342

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D
Sbjct: 343  NAHSTIPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDINAEVSVVRDIRERELRVYTD 402

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELL----DGVRSFDDFLREGLIEYLDVNEENNALIA 652
             GRV RPL I +       + H+  +L    +    +   ++ GLIE LD  EE   +I 
Sbjct: 403  AGRVSRPLFIVENQQLLFTKKHINLMLSTDEEKKLKWSALVKTGLIEMLDAEEEETVMIC 462

Query: 653  LY-------------------EGDATPDT-----------THIEIEPFTILGVIAGLIPY 682
            +                    +GD  P             TH EI P  ILGV A +IP+
Sbjct: 463  MTPEDLENSRLQSMGVDPHANDGDFDPAARLKANPNAHTWTHCEIHPSMILGVCASIIPF 522

Query: 683  PHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG 742
            P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L 
Sbjct: 523  PDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFRELP 582

Query: 743  AGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPD 802
            AGQNA VA++ YSGY+ ED+++MN+S++DRG  R +  + Y  + +K      +   +P 
Sbjct: 583  AGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSMYYRSYMDLEKKSGIQQLEEFEKPT 642

Query: 803  RTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 862
            R      RM+   +       L+DDGL APG  +   D+ I K +P+      +    + 
Sbjct: 643  RE--NTLRMKHGTYDK-----LEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRA 695

Query: 863  DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 922
             +R R      K    E+ ++D+V + ++  G   +K  +R TR P++GDKF+SRHGQKG
Sbjct: 696  HTR-RDVSTPLKST--ESGIIDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKG 752

Query: 923  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 982
              G   +QED PF+  GI PD+++NPH  PSRMT+G ++E L  K     G     + F 
Sbjct: 753  TIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVATIIGNEGDATPFT 812

Query: 983  EPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1042
            E      TVE +S+ L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK+
Sbjct: 813  EL-----TVEGVSDVLRQKGYHSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 867

Query: 1043 HARGSGPRVMLTRQPTEGRA 1062
            H+R  GP  +LTRQP EGR+
Sbjct: 868  HSRARGPVQILTRQPVEGRS 887


>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Phragmidium sp. MB]
          Length = 931

 Score =  527 bits (1358), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 335/958 (34%), Positives = 518/958 (54%), Gaps = 99/958 (10%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGN-------INASVTSSTETVKSKTVI-----QMEKG 229
            +EKVL+ QE+++ N V +      +       I ++V   ++T+ S  V      + EK 
Sbjct: 1    SEKVLIAQERMAANHVCVYAKAAPSPVSFLCEIRSAVEKGSKTISSMQVKMYGGHKAEKA 60

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECA--NL 283
                 +   L      +PI+VV +A+G+  D+E++  +  D R    +L  ++ C   + 
Sbjct: 61   GGGATIKTTLPYIRNDVPIVVVFRALGIIPDKEILDHICYD-RNDIGMLEMLKPCLEDSF 119

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I  QE AL+++ G+   ST G     R   A  IL+   L ++ +       K ++   
Sbjct: 120  PIQEQEVALDFI-GRRGTST-GLSRERRLQYAEEILQKEMLPHISMSEGQQGKKAYFFGY 177

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIIL 399
            M+ R++ A L++  +DD+D+ G KRL+L+G L++ LF  LF+ +  +V    QK V+  +
Sbjct: 178  MVHRLLLAALDRRDLDDRDHFGKKRLDLAGPLLASLFRILFRKLTKDVYRHLQKCVE--M 235

Query: 400  SKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLG 458
             KP     F+L+  +  ++IT GL+ +L+TGN+ D K+    + G++QVL R +F  TL 
Sbjct: 236  QKP-----FNLNAAVKSNTITNGLKYSLATGNWGDQKKAMQAKAGVSQVLNRYTFASTLS 290

Query: 459  HMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP 518
            H+ R +    +  K++ PR L  S WGM+CP +TPEG+ACGLVKNLALM++++      P
Sbjct: 291  HLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAP 350

Query: 519  LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGE 578
            ++      G+E L+  S +       F+   NG+  G HR P    D +++LRR G I  
Sbjct: 351  IVEFLEEWGMESLDEYSSDMASGTKVFV---NGVWQGVHRSPADLLDTIKRLRRCGDIEP 407

Query: 579  FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD------- 631
             VSV  + ++R + + +DGGRVCRPL I +     +K+ H++ L +G  S  D       
Sbjct: 408  EVSVMRDVRERELRVFTDGGRVCRPLFIVENQQLLLKKEHVEWLSNGCISASDDPNAEIP 467

Query: 632  -----------FLREGLIEYLDVNEENNALI---------------------------AL 653
                        +  G++EYLD  EE   +I                           A 
Sbjct: 468  EDEGQPFGWSQLVARGIVEYLDAEEEETVMICMTPEELEQSREYQLTGQVPREQFDPAAR 527

Query: 654  YEGDAT---PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
             +G+ +      TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N  
Sbjct: 528  LKGNVSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNFR 587

Query: 711  CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
             RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+
Sbjct: 588  MRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 647

Query: 771  DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLA 830
            DRG  R    + Y    +K    + +   +P R      R++   +       LD+DG+ 
Sbjct: 648  DRGLFRSFYYRSYMDQEKKAGALSMEEFEKPSRE--TTLRLKQGTYDK-----LDEDGII 700

Query: 831  APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 890
             PG  +  +D+ I K + +      M   GQ D  +     +      E  ++D+V + +
Sbjct: 701  NPGTRVSGDDIIIGKTASIPEGSEEM---GQRDKSHTKRDVSMPLKSTENGIIDQVLITT 757

Query: 891  DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 950
            + +    +K  IR TR PE GDKF+SRHGQKG  G + +QED PF+  G+CPD+I+NPH 
Sbjct: 758  NSDNLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHA 817

Query: 951  FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDM 1010
             PSRMT+G ++E L  K     G     + F E      TVE+IS  L ++G+   G ++
Sbjct: 818  IPSRMTIGHLVECLLSKVSTITGNEGDATPFSEV-----TVEAISSLLKENGYHSRGLEI 872

Query: 1011 IYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++G TG  L+A  ++GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 873  MFNGHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLR 930


>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 330/889 (37%), Positives = 481/889 (54%), Gaps = 68/889 (7%)

Query: 106 CRLSDMTYAAPILVNIE---YVQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVLYGKDE 160
            RL ++TY+AP+ V++      +G   E+ T   E   V IG++PIMLRS  C LY   E
Sbjct: 2   ARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQEFAKVFIGKVPIMLRSSYCTLYQNSE 61

Query: 161 AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------SVTSS 214
            +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      S+  S
Sbjct: 62  KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES 121

Query: 215 TETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEVVQMVG 264
                S   ++M           G+       +++ +IPI++V +A+G  +D+++++ + 
Sbjct: 122 QNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC 181

Query: 265 ---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRD 321
               D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A  IL+ 
Sbjct: 182 YDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKYAKEILQK 237

Query: 322 VFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381
             L +V V       K +Y   ++ R++   L + A DD+D+ GNKRL+L+G L+  LF 
Sbjct: 238 EMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR 297

Query: 382 DLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRF 437
            LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+     
Sbjct: 298 MLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANA 350

Query: 438 KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 497
              R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +TPEG+A
Sbjct: 351 AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQA 410

Query: 498 CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
           CGLVKNLALM ++T      P++        E+ E +S   +  P +  +  NG  +G H
Sbjct: 411 CGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFVNGCWVGIH 468

Query: 558 RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
           R P+     +R+LRR   +   V V  + + + + + +D GR  RPL I +K    IK+ 
Sbjct: 469 RNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKK 528

Query: 618 HMKELLDGVRS----FDDFLREGLIEYLDVNEENNALIALYEGD----------ATPDT- 662
            ++ L     S    + D + +G IEY+D  EE   +I++   D          A  +T 
Sbjct: 529 DIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETY 588

Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
           TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L Y+L Y
Sbjct: 589 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYY 648

Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
           PQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R +  + 
Sbjct: 649 PQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 708

Query: 783 YTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVY 842
           Y    +K      +   RP R       M + H S      LDDDGLA PG  +   DV 
Sbjct: 709 YRDEEKKMGTLVKEDFGRPSRENT----MGMRHGS---YDKLDDDGLAPPGTRVSGEDVI 761

Query: 843 INKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 902
           I K +P+    S     GQ+ SRY     +      E+ +VD+V L ++ +G   +K  +
Sbjct: 762 IGKTTPIAQDDS----QGQS-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRM 816

Query: 903 RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
           R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 817 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 865


>gi|298712018|emb|CBJ32957.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 451

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/468 (56%), Positives = 326/468 (69%), Gaps = 31/468 (6%)

Query: 699  KQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYD 758
            + AMG  A N   RMD LLY LV+PQ+P++TTR ++LV +D++  GQNA++AVMSYSGYD
Sbjct: 6    RHAMGTTALNMHERMDGLLYALVHPQKPMVTTRVLDLVHFDQVPGGQNASIAVMSYSGYD 65

Query: 759  IEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG--------PGAER 810
            IEDAIV+N+ SLDRGFGRC+V +K+ A  +KY N T D+I+   R          P   R
Sbjct: 66   IEDAIVLNRGSLDRGFGRCMVFRKHQAPIRKYPNGTQDKIVGKVRASEFPRGEDDPRWPR 125

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
             +           LD+DG+   G  + P  + +NK SP  T GS     G   S + S  
Sbjct: 126  YKA----------LDEDGICRVGARLDPGTIMVNKHSPASTSGS-----GPVSSDFASTP 170

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             +YK P      VD+V L +++N D  IK L+R TRRPE+GDKFSSRHGQKGVCG IV Q
Sbjct: 171  LSYKAP--AESYVDKVVLTANENEDYLIKILLRQTRRPEVGDKFSSRHGQKGVCGIIVPQ 228

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF++ GICPDLIMNPHGFPSRMTVGKM+EL+ GKAGV  G   YG+AFGE  G AD 
Sbjct: 229  EDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADR 288

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V    + LV+ G+SY GKDM+ SG  G PL  YIF GP++YQKLKHMV+DKMHAR  GPR
Sbjct: 289  VHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPR 348

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQPTEGR+R+GGLR+GEMERDCLI YGAS LI ERLM+SSD F   VC+ CGLLGY
Sbjct: 349  AVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGY 408

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
                  +G C  C++ + ++ ++LPYACKLL QELQSMNIVPRLKL +
Sbjct: 409  ------SGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQD 450


>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 330/904 (36%), Positives = 484/904 (53%), Gaps = 88/904 (9%)

Query: 101 LNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C +
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSYCTV 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSST 215
           Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A V    
Sbjct: 65  YQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 216 ETVKSKTVIQMEKGKMYLLL-----------NQFVK--------KIPIMVVMKAMGMESD 256
              +S+         M++ +            Q+V+        +IPI++V +A+G  +D
Sbjct: 125 SMAESQN---RPPSSMFVRMLSRTSAKGGSSGQYVRATLPYIRTEIPIIIVFRALGFVAD 181

Query: 257 QEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREG 313
           +++++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R  
Sbjct: 182 KDILEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIK 237

Query: 314 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSG 373
            A  IL+   L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G
Sbjct: 238 YAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAG 297

Query: 374 QLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            L+  LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+T
Sbjct: 298 PLLGGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLAT 350

Query: 430 GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
           GN+        R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP
Sbjct: 351 GNWGQANAAGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCP 410

Query: 490 CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
            +TPEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P +  +  
Sbjct: 411 AETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFV 468

Query: 550 NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
           NG  +G HR P      +R+LRR   +   V V  + + + + + +D GR  RPL I +K
Sbjct: 469 NGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEK 528

Query: 610 GISRIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD------ 657
               IK+  ++ L       DG   + D + +G IEY+D  EE   +I++   D      
Sbjct: 529 QRLLIKKKDIRALQQRESPEDG--GWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARL 586

Query: 658 ----ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
               A  DT TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 587 NPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 646

Query: 713 MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
           MD+L Y+L YPQ+PL+TTR +E + + +L AG N+ VA+  YSGY+ ED+++MN+SS+DR
Sbjct: 647 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINSIVAIACYSGYNQEDSVIMNQSSIDR 706

Query: 773 GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
           GF R +  + Y    +K      +   RP+R       M + H S      LDDDGLA P
Sbjct: 707 GFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPP 759

Query: 833 GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD-----GETCVVDRVA 887
           G  +   DV I K SP+           Q D++  S+R T +         E+ +VD+V 
Sbjct: 760 GTRVSGEDVIIGKTSPI----------AQDDAQGVSSRYTRRDHSTSLRHSESGMVDQVL 809

Query: 888 LCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
           L ++ +G   +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+N
Sbjct: 810 LTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 869

Query: 948 PHGF 951
           PH  
Sbjct: 870 PHAI 873


>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 330/896 (36%), Positives = 482/896 (53%), Gaps = 72/896 (8%)

Query: 101 LNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C +
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTV 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
           Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65  YQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVR 124

Query: 210 SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
           S+  S     S   ++M           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125 SMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260 VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
           ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A 
Sbjct: 185 LEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTREKRIKYAK 240

Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            IL+   L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377 SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
             LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                   R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +T
Sbjct: 354 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAET 413

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
           PEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P +  +  NG 
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFVNGC 471

Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +G HR P      +R+LRR   +   V V  + + + + + +D GR  RPL I +K   
Sbjct: 472 WVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531

Query: 613 RIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--------- 657
            IK+  ++ L       DG   + D + +G IEY+D  EE   +I++   D         
Sbjct: 532 LIKKKDIQALQQRESHEDG--GWHDLVAKGFIEYVDTEEEETTMISMTINDLISAKLNPE 589

Query: 658 -ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
            A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590 EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 649

Query: 716 LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
           L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776 RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
           R +  + Y    +K      +   RP+R       M + H S      LDDDGLA PG  
Sbjct: 710 RSLFFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTR 762

Query: 836 IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
           +   DV I K +P+    S     GQ  SRY     +      E+ +VD+V L ++ +G 
Sbjct: 763 VSGEDVIIGKTTPI----SQDDAQGQA-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGL 817

Query: 896 LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
             +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 818 RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|384096572|gb|AFH66782.1| RNA polymerase II second largest subunit, partial [Rhizidium
            endosporangiatum]
          Length = 911

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 329/938 (35%), Positives = 495/938 (52%), Gaps = 80/938 (8%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQMEKGK----- 230
            +EKVL+ QE+++ N V +    +    +      S+      V S   I+M   K     
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPATYSFSCEIRSLAERGSKVASTLFIKMMHAKGEKAA 60

Query: 231  ----MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANL 283
                +   L      +PI +V +A+G+ +DQE+++ +     D     LL P IEE    
Sbjct: 61   GGQVIRTSLPYIKTDVPIFIVFRALGVVADQEIMEKICYDFNDHPMLELLRPCIEEA--F 118

Query: 284  DIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAV 343
             I +QE AL ++  +   +T G     R   A  IL+   L +V    +    K ++   
Sbjct: 119  VIQSQEVALTWIGNR--GNTIGVSQEKRIKYAQDILQKEMLPHVGTKAHTETRKAYFFGY 176

Query: 344  MLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPS 403
            M+ R++ A L +   DD+D+ G KRL+L+G L+S LF  LF+ +  +V +T    L K  
Sbjct: 177  MIHRLLLAALERREFDDRDHFGKKRLDLAGALLSGLFRMLFRKLTKDVSRT----LQKCM 232

Query: 404  RSSR-FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMT 461
             ++R F++   +  + I  GL+ +L+TGN+  +   M  R G+ QVL R +F  TL H+ 
Sbjct: 233  ETNRNFNIKTAVDANIIKNGLKYSLATGNWGEQSKAMQARAGVGQVLNRYTFASTLSHLR 292

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R++    +  K++ PR L  + WGM+CP +TPEG+ACGLVKNL+LM  +T      P + 
Sbjct: 293  RMNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAVITVGCPTLPFVE 352

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                  +E+LE +    +  P++  V  NG+ +G HR P    + +R+LRR   +   VS
Sbjct: 353  FLEEWTMENLEEVGPSTI--PDATKVFLNGVWVGVHRDPDMLVNTLRELRRRVDVNAEVS 410

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK--EHHMKELLDGVR--SFDDFLREGL 637
            +  +  +  + + +D GR+CRPL I D     +K  + H++ L D     SF+D L EG+
Sbjct: 411  IVRDVAENELRLYTDAGRICRPLFIVDNETMTLKLTKEHIERLNDKETPASFNDLLCEGV 470

Query: 638  IEYLDVNEENNALIALYEGD---------------------------ATPDTTHIEIEPF 670
            I  +D  EE   +IA+   D                              + TH EI P 
Sbjct: 471  IGLIDTEEEETIMIAMTPEDLDMSRRIVHGLPVVRHQGITERAKSIPTVHNWTHCEIHPS 530

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG--NIAFNQLCRMDSLLYLLVYPQRPLL 728
             ILG+ A +IP+P HNQSPRN YQ AMGKQAMG  N  F+Q  RMD++  +L YPQ+PL 
Sbjct: 531  MILGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFNTNFHQ--RMDTMTNILFYPQKPLA 588

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQ 788
             TR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + Y    +
Sbjct: 589  ATRSMEYLRFRELPAGQNAIVAIGCYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYMDTEK 648

Query: 789  KYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
            K   +T++   +P R      R             LD+DG+ APG  +   D+ I K  P
Sbjct: 649  KEGLTTTETFEKPTRDSTLRLRHGTYEK-------LDEDGIIAPGVRVSGEDIIIGKTVP 701

Query: 849  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 908
            +      +   GQ  S +     +      E+ +VD+V + ++ +G   +K  +R  R P
Sbjct: 702  IPLDSEEL---GQRTSTHTKRDASTPLKSTESGIVDQVVVTTNHDGFKFVKVRVRSVRVP 758

Query: 909  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968
            ++GDKF+SRHGQKG CG   + ED PF+  GI PD+I+NPH  PSRMT+G ++E L GK 
Sbjct: 759  QIGDKFASRHGQKGTCGITYRMEDMPFTRDGITPDIIVNPHAIPSRMTIGHLVECLLGKV 818

Query: 969  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1028
                GR    + F   +     V  IS  L  +GF   G +++Y+G TG  L A +F GP
Sbjct: 819  ATMTGREGDATPFTSVN-----VADISNELASYGFQQRGFEVLYNGHTGRKLNAQLFFGP 873

Query: 1029 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
             YYQ+LKHMV DK+H R  GP  +L RQP EGR+R+GG
Sbjct: 874  TYYQRLKHMVDDKIHLRARGPMQILVRQPVEGRSRDGG 911


>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryphonectria parasitica]
          Length = 941

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 329/967 (34%), Positives = 511/967 (52%), Gaps = 107/967 (11%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGN---------INASVTSSTETVKSKTVIQMEKGK-- 230
            +EKVL+ QE+ + N  I+   KK           I +++   +  + S T+    KG+  
Sbjct: 1    SEKVLIAQERSAAN--IVQVFKKAQPSPDLYQAEIRSALEKGSRLISSTTLKLKAKGETA 58

Query: 231  -------MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEEC 280
                   +   L    K+IPI +V +A+G+ SD++++  V    +D +   +L P IEE 
Sbjct: 59   RGGFGQTIQATLPYVKKEIPIAIVFRALGVISDEDILNAVCYDRQDTQMMEMLRPCIEEA 118

Query: 281  ANLDIYTQEKALEYLEGKVKRSTFGSPPN--DREGRAFSILRDVFLANVPVHNNNFRPKC 338
                I  +E AL+Y+    KRS  G   +   R   A  IL+   L ++         K 
Sbjct: 119  --FAIQEREVALDYI---AKRSNSGHSASKIQRMKNAKEILQKELLPHIAQTEGCETRKA 173

Query: 339  FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDII 398
            +++  M  ++++  L +   DD+D+ G KRL+L+G L++ LF ++ K +  ++   +   
Sbjct: 174  YFLGYMTHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVKKLTGDMMAYMKRC 233

Query: 399  LSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHR-KGMTQVLARLSFIGTL 457
            +S+      FDL+  I   ++T GL+ +L+TGN+  ++  M    G++QVL R +F  TL
Sbjct: 234  VSE---GKHFDLALGIRHSTLTNGLKYSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTL 290

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
             H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +V+      
Sbjct: 291  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAE 350

Query: 518  PLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIG 577
            P+        +E LE    E   +P++  +  NG  +G H +P     ++++LRR   I 
Sbjct: 351  PIKDFMVQRNMEVLE--EYEPGASPDATKIFINGTWVGVHSQPAHLVTLVQELRRRCIIS 408

Query: 578  EFVSVFVNEKQRCVYIASDGGRVCRPLVIAD----------KGISRIKEH---------- 617
              VS+  + + R   I SD GRV RPL + +          + ++  KEH          
Sbjct: 409  HEVSLVRDIRDREFKIFSDAGRVMRPLFVVNTPDNENRSRRRDLALTKEHAGVLRMMPKY 468

Query: 618  HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD-------------------- 657
              K+  +    +D     G+IEYLD  EE  A+I +   D                    
Sbjct: 469  SRKKDDEDYFGWDGLQNSGVIEYLDAEEEETAMICMTPEDLEDFRQRKLRGKDGKDEEPE 528

Query: 658  -------------ATPDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701
                           PD    TH EI P  +LG+ A +IP+P HNQSPRNTYQ AMGKQA
Sbjct: 529  DEGRSLNARVKTRINPDIHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAMGKQA 588

Query: 702  MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
            MG    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED
Sbjct: 589  MGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQED 648

Query: 762  AIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLL 821
            +++MN+SS+DRG  R +  + YT   ++   +  +   +P R+    + +++ H +    
Sbjct: 649  SVIMNQSSIDRGLFRSLFFRSYTDSEKRVGINVVESFEKPFRS----DTLRLKHGT---Y 701

Query: 822  LILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETC 881
              LDDDG+ APG  +   D+ I K SP+      +   GQ   ++     +      E+ 
Sbjct: 702  DKLDDDGIIAPGVRVSGEDIIIGKTSPINADNQEL---GQRTEQHVKRDASTPLRSTESG 758

Query: 882  VVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 941
            ++D V + ++++G   +K  +R T+ P++GDKF+SRHGQKG  G   +QED PF+  GI 
Sbjct: 759  IIDSVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGIT 818

Query: 942  PDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKH 1001
            PD+I+NPH  PSRMT+  +IE L  K     G     + F E      TV+SISE L +H
Sbjct: 819  PDIIINPHAIPSRMTIAHLIECLMSKLATLKGMEGDATPFTEV-----TVDSISELLRQH 873

Query: 1002 GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGR 1061
            G+   G +++Y+G TG  L+A +F GP YYQ+L+HMV DK+HAR  GP  ++TRQP EGR
Sbjct: 874  GYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGR 933

Query: 1062 ARNGGLR 1068
            AR+GGLR
Sbjct: 934  ARDGGLR 940


>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
          Length = 873

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 331/896 (36%), Positives = 482/896 (53%), Gaps = 72/896 (8%)

Query: 101 LNPHMCRLSDMTYAAPILVNIE---YVQGSHTEKTT--MEKNDVVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++      +G   E+ T   E   V IG++PIMLRS  C L
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFKKVFIGKVPIMLRSSYCTL 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
           Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65  YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 210 SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
           S+  S     S   ++M           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125 SMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260 VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
           ++ +     D +   LL PS+EE     I  Q+ AL+Y+ GK + ST G     R   A 
Sbjct: 185 LEHICYDFSDTQMMELLRPSLEEA--FVIQNQQVALDYI-GK-RGSTVGVTKEKRIKYAR 240

Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            IL+   L +V +       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+
Sbjct: 241 EILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377 SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
             LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                   R G++QVL RL++  TL H+ R++    +  K++ PR L  S WGM+CP +T
Sbjct: 354 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAET 413

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
           PEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P S  +  NG 
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQSTKIFVNGC 471

Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +G HR P+     +R LRR   +   V V  + + + + + +D GR  RPL I +K   
Sbjct: 472 WVGIHRNPELLVKTLRALRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531

Query: 613 RIKEHHMKELL------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD--------- 657
            IK+  ++ L       +G   + D + +G IEY+D  EE   +I++   D         
Sbjct: 532 LIKKRDIRALQLRESPDEG--GWHDLVAKGYIEYVDTEEEETTMISMTINDLVSARLNPE 589

Query: 658 -ATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDS 715
            A  +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+
Sbjct: 590 EAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDT 649

Query: 716 LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFG 775
           L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF 
Sbjct: 650 LAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFF 709

Query: 776 RCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEI 835
           R +  + Y    +K      +   RP+R       M + H S      LDDDGLA PG  
Sbjct: 710 RSLFFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTR 762

Query: 836 IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 895
           +   DV I K +P+    S     GQ  SRY     +      E+ +VD+V L ++ +G 
Sbjct: 763 VSGEDVIIGKTTPIAQDES----QGQA-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGL 817

Query: 896 LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
             +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 818 RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
            squamosus]
          Length = 898

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 315/869 (36%), Positives = 484/869 (55%), Gaps = 75/869 (8%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +    +D +   +L P I+E     I  +E AL+++  +
Sbjct: 60   IPIWVVFRALGVISDRDILEHICYDLQDNQMLEMLKPCIDE--GFVIQDREIALDFIGNR 117

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +
Sbjct: 118  --GTTIGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDL 175

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFI 414
            DD+D+ G KRL+L+G L++ LF  LF+ +  +V    QK V++       +  F+LS  +
Sbjct: 176  DDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRHLQKCVEM-------NKEFNLSLAV 228

Query: 415  VRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKV 473
              ++IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K+
Sbjct: 229  KHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKI 288

Query: 474  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL 533
            + PR L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I      G+E LE 
Sbjct: 289  AKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE- 347

Query: 534  LSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVY 592
               E  H       +F NG+ +G HR P      +R+LRR   I   VSV  + ++R + 
Sbjct: 348  ---ENTHASTPCTKVFVNGVWMGVHRDPAGLVRTLRRLRRKDDINCEVSVVRDIRERELR 404

Query: 593  IASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR------SFDDFLREGLIEYLDVNEE 646
            + +D GRVCRPL I ++    +++ H++ L+          ++D+ ++EG+IE LD  EE
Sbjct: 405  LYTDAGRVCRPLFIVEEQQLLVQKKHIENLVRSKEDPSYEYNWDNMIKEGVIELLDAEEE 464

Query: 647  NNALIALYEGDA------------------------------TPDTTHIEIEPFTILGVI 676
               +I +   D                               +   TH EI P  ILGV 
Sbjct: 465  ETVMICMTPEDLENSRLQAAGIDPHADEEHVDPSARLKAPTFSHTWTHCEIHPSMILGVC 524

Query: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
            A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E +
Sbjct: 525  ASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYL 584

Query: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796
             + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +
Sbjct: 585  RFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLE 644

Query: 797  RILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856
               +P R      RM+   +       L++DGL APG  +   D+ I K +P+      +
Sbjct: 645  EFEKPTRE--TTLRMKHGTYDK-----LENDGLIAPGTNVNGEDIIIGKTAPIPPDSEEL 697

Query: 857  SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 916
                +T ++ R      K    E  +VD+V + ++  G   +K  +R TR P++GDKF+S
Sbjct: 698  GQRTRTHTK-RDVSTPLKST--EQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFAS 754

Query: 917  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976
            RHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G   
Sbjct: 755  RHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIGNEG 814

Query: 977  YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKH 1036
              + F        TVE++S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKH
Sbjct: 815  DATPFTNL-----TVETVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 869

Query: 1037 MVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
            MV DK+H+R  GP  +LTRQP EGR+R+G
Sbjct: 870  MVDDKIHSRARGPVQILTRQPVEGRSRDG 898


>gi|311977620|ref|YP_003986740.1| DNA-directed RNA polymerase subunit 2 [Acanthamoeba polyphaga
            mimivirus]
 gi|311788809|gb|ADO18079.2| DNA-directed RNA polymerase subunit 2 [Acanthamoeba polyphaga
            mimivirus]
 gi|339061176|gb|AEJ34480.1| DNA-directed RNA polymerase subunit 2 [Acanthamoeba polyphaga
            mimivirus]
          Length = 1193

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 388/1214 (31%), Positives = 621/1214 (51%), Gaps = 133/1214 (10%)

Query: 32   FQLLPEFLKV--RGLVKQHLDSFNYFVNTGIRKIVRANDRIVS--GIDPSIF---LRFKD 84
            F LL  F +   + LVK H+DSFN F+   I  I++  D ++S    +  I    L F D
Sbjct: 21   FALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKIIRYRLTFND 80

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS---HTEKTTME-----K 136
            + I  P  T++     L P       ++Y+A     +   Q      T+KT        +
Sbjct: 81   LGIKPP--TLENEENLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPE 138

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
             DV I +IPIM+ S  C L  + +        C  D GGYFI+ G+EKV+L  E +   +
Sbjct: 139  KDVPIAKIPIMVLSKYCNLTLRPDIAGK---HCKYDAGGYFIVNGSEKVVLSVESMIPRK 195

Query: 197  VIIDTDKKGN-----INASVTSSTETVKSKTV--IQMEKGKMYLLLNQFVKKIPIMVVMK 249
             ++ T +  N     +      +++ V +  +  ++M++    +L     K++ I   ++
Sbjct: 196  PVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIR 255

Query: 250  AMGMESDQEVVQMVGRDPRYSALLLPSIEEC---ANLDIYTQEKALEYLEGKVKRS-TF- 304
            A+G+E+D+++V  +  D +    LL  +  C   +N    T+E+ALE +  ++K + TF 
Sbjct: 256  ALGIETDEDIVDSI-LDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFT 314

Query: 305  GSPPNDREGRAFSILRDVFLANVPVH--NNNFRP------KCFYVAVMLRRMVEAML--- 353
             + P  +  +    L  +    V  H  +    P      K  Y+  M+ ++++  L   
Sbjct: 315  DTNPEVKAEQRRRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGA 374

Query: 354  ----NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK---TVDIILSKPSRSS 406
                     DD+D + NKR++L+G+L+  LF+  +  M+++  K   T +I   KP    
Sbjct: 375  REVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP--- 431

Query: 407  RFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-SP 465
              ++   I  +SI  GL + LSTGNF  +     RKG++Q+L R++ + +L +M RV +P
Sbjct: 432  --NIIPHIKPNSIEQGLRQALSTGNFGSQS----RKGLSQMLNRMNHLHSLSYMRRVITP 485

Query: 466  QFEKSR-KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
              + S  K++ PR L  +Q+G +CP ++PEG   GLVKN+A+M  +T +      I   Y
Sbjct: 486  TVDASTMKMTSPRHLHNTQYGSMCPLESPEGPKTGLVKNMAMMEGITINMNSQIPIIESY 545

Query: 525  CLG-VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
             +G +  LE  + + LH      V  NG  LG  R      + +R +R  G++   V + 
Sbjct: 546  LIGKITTLESANKKRLHQ--YVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGLV 603

Query: 584  VNEKQRCVYIASDGGRVCRP-LVIADKGISRIKEHHMKELLDGVRSFDDFLRE--GLIEY 640
            +N K    +I +DGGR+ RP L + D      K +   E+LD V S+++FL +   +IEY
Sbjct: 604  LNYKTAEFHIYTDGGRLIRPYLTVTDN-----KLNFKPEMLDEVNSWEEFLAKFPEVIEY 658

Query: 641  LDVNEENNALIAL-------------------------------YEGDATPDTTHIEIEP 669
            +D  EE N ++A+                               Y+ +     TH EI P
Sbjct: 659  VDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIHP 718

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
              ILG+I+  IP+P HNQSPR  +Q    +QAMG    +   R D + Y+L +PQ PL+T
Sbjct: 719  CMILGLISSNIPFPDHNQSPRGIFQYNQARQAMGLYISDYRERTD-ISYILYHPQIPLVT 777

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            +R  +  G     AG+N+ VA+ SY+GY+ ED++V+N S++ +G+ R   +KKY  I +K
Sbjct: 778  SRASKYTGTHIFPAGENSIVAIASYTGYNQEDSLVINDSAIQKGYMRAQALKKYMEIIKK 837

Query: 790  Y-ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
              A+S +   ++PDR     + ++  ++  L      ++G A    +I+  DV I   +P
Sbjct: 838  NPASSQTSIFMKPDRNK--VDNLRDANYDKL-----SEEGYAKVETVIRDGDVVIGVVNP 890

Query: 849  LETRGSIMSPTGQTDSR-YRSARQTYKG--PDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
                     PT + D + Y+ A   YK   P      VD+V    + +G   IK  IR  
Sbjct: 891  --------KPTAREDEKQYKDASSIYKSLIPGA----VDKVITEVNNDGYPIIKMRIRSE 938

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R P +GDKFSSR GQKG  G    + D  FS+ G+ PD+I+NP+  P RMT+G++IE L 
Sbjct: 939  RIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLL 998

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GK     G   YG A   P    D + +I++ LV  G+   G + +Y+G+ G  L   IF
Sbjct: 999  GKLCAVKGV--YGDA--TPFTSVD-LNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIF 1053

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            +GP YYQ+LK MV DK H+R  GP  +LTRQ  EGR+R+GGLR+GEMERD L A+G +  
Sbjct: 1054 IGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGEMERDALCAHGVAQF 1113

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + E+ + +SD +   VC  CG   +   + K   C+ C+N  +IS + +PYA KLL+QEL
Sbjct: 1114 LKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQEL 1173

Query: 1146 QSMNIVPRLKLAEA 1159
             S+NI+ +++ ++ 
Sbjct: 1174 ASINILGKIRTSKT 1187


>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score =  524 bits (1349), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 294/678 (43%), Positives = 395/678 (58%), Gaps = 35/678 (5%)

Query: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
            TPEG+A GLVKNLALMT++T      P++       +E+LE +S   +  P +  +  NG
Sbjct: 2    TPEGQAVGLVKNLALMTYITVGSSANPILDFLEEWTMENLEEISPALI--PTATKIFVNG 59

Query: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
              +G HR P+     +RKLRR   +   VS+  + +   + + +D GR  RPL I     
Sbjct: 60   CWVGVHRDPEMLIRTLRKLRRQLNVKSEVSMVRDVRLNELRLYTDYGRCSRPLFIVKNQR 119

Query: 612  SRIKEHHMKEL----LDGVRSFDDFLREGLIEYLDVNEENNALIALYEGD-----ATPDT 662
              IK+  +  L    + GV  +   + +G+IEY+D  EE   +IA+   D     A P+T
Sbjct: 120  LLIKKEDIDALQQKEITGV-GWHQLIAKGIIEYVDTMEEETTMIAMTINDVVSARANPET 178

Query: 663  ------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
                  TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L
Sbjct: 179  AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTL 238

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
             Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R
Sbjct: 239  AYILYYPQKPLVTTRAMEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFHR 298

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
             I  + Y    +K    T +   +P+R      R    H S      LD DG+A PG  +
Sbjct: 299  SIFYRSYRDEEKKQGTLTKEEFEKPNRDITSGMR----HGS---YDKLDSDGIAPPGTRV 351

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
               DV I K  PL    S     G    R+    Q+      E+ ++D+V L  + +G  
Sbjct: 352  AGEDVIIGKTMPLPQDDS-----GTQAQRFTKRDQSTTLRHSESGMIDQVILTINNDGFR 406

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             +K  +R  R P++GDKF+SRHGQKG  G    QED PFS+ GI PDL++NPH  PSRMT
Sbjct: 407  FVKIRVRSIRIPQIGDKFASRHGQKGTIGMTYTQEDMPFSQEGISPDLVVNPHAIPSRMT 466

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            +G +IE L GK     G+    + F +      TV+SIS  L   G+   G +++Y+G T
Sbjct: 467  IGHLIECLMGKVAALMGKEGDATPFTDV-----TVDSISRALHSCGYQMRGFEVMYNGHT 521

Query: 1017 GCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDC 1076
            G  LQA+IF+GP YYQ+LKHMV DK+H+RG GP  +LTRQP EGR+R+GGLR GEMERDC
Sbjct: 522  GRKLQAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDC 581

Query: 1077 LIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136
            +IA+GA+  + ERL   SD + V VC  CGL+   N K     C  CKN  +I  + +PY
Sbjct: 582  MIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIANANLKKSFFECRGCKNKTDIVQVHIPY 641

Query: 1137 ACKLLIQELQSMNIVPRL 1154
            ACKLL QEL SM I PR+
Sbjct: 642  ACKLLFQELMSMAIAPRM 659


>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
            dolichaula]
          Length = 882

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 307/856 (35%), Positives = 473/856 (55%), Gaps = 71/856 (8%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV + +G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 55   IPIWVVFRGLGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 112

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +D
Sbjct: 113  -GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELD 171

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+L+  +   +I
Sbjct: 172  DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLALAVKHQTI 228

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 229  TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 288

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I      G+E LE    E 
Sbjct: 289  LHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE----EN 344

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + +++ + I +D 
Sbjct: 345  AHSTTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRIYTDA 404

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD---------FLREGLIEYLDVNEENN 648
            GRVCRPL I +     +++ H++ L     SFD+          ++ G+IE LD  EE  
Sbjct: 405  GRVCRPLFIVENQQLLLQKKHIRWLNS---SFDEEGNEYKWEQLIKGGVIELLDAEEEET 461

Query: 649  ALIALY-------------------EGDATPDT-----------THIEIEPFTILGVIAG 678
             +I++                    +GD  P             TH EI P  ILG+ A 
Sbjct: 462  VMISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICAS 521

Query: 679  LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
            +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + +
Sbjct: 522  IIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLKF 581

Query: 739  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
             +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +  
Sbjct: 582  RELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEF 641

Query: 799  LRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 858
             +P R      RM+   +       L+DDGL APG  ++  D+ I K +P+      +  
Sbjct: 642  EKPTRE--TTLRMKHGTYDK-----LEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQ 694

Query: 859  TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 918
              +T +R R      K    E+ +VD+V + ++  G   +K  +R TR P++GDKF+SRH
Sbjct: 695  RTRTHTR-RDVSTPLKST--ESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRH 751

Query: 919  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 978
            GQKG  G   +QED PF+  GI PDL++NPH  PSRMT+G ++E L  K     G     
Sbjct: 752  GQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLSKVATLIGNEGDA 811

Query: 979  SAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            + F +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV
Sbjct: 812  TPFTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 866

Query: 1039 LDKMHARGSGPRVMLT 1054
             DK+H+R  GP  +LT
Sbjct: 867  DDKIHSRARGPVQILT 882


>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
          Length = 702

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/683 (41%), Positives = 400/683 (58%), Gaps = 40/683 (5%)

Query: 491  DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFN 550
            +TPEG+ACGLVKNLALM +++      P++        E+LE +   ++  PN+  +  N
Sbjct: 2    ETPEGQACGLVKNLALMAYISVGSAAAPILEFLEEWTTENLEEIHPNDI--PNTTKIFVN 59

Query: 551  GLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 610
            G+ +G HR P      ++KLRR   +   V V  + + + + + +D GR CRPL   D  
Sbjct: 60   GVWVGIHRDPDMLVKTLQKLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCCRPLFXVDNQ 119

Query: 611  ISRIKEHHMKELLDGV-----RSFDDFLREGLIEYLDVNEENNALIALYEGD-----ATP 660
               IK+HH++ELLD       R ++  +  GLIEY+D  EE   +I++   D       P
Sbjct: 120  RLVIKKHHIEELLDPTLPDEDRGWNKLVELGLIEYVDTEEEETTMISMTINDLVSARQNP 179

Query: 661  DT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRM- 713
            +       TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG I  ++L R+ 
Sbjct: 180  EEAYSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG-ILCHKLFRLA 238

Query: 714  --DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
                 +     PQ+PL TTR +E + + +L AGQNA V ++ YSGY+ ED+++MN+SS+D
Sbjct: 239  XDHXGVCPCTIPQKPLATTRAMEHLHFRQLPAGQNAIVGILCYSGYNQEDSVIMNQSSID 298

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RGF R I  + Y    +K  +   +   +P R     E +  + H +   L  DDDG+A 
Sbjct: 299  RGFFRSISYRSYRDEEKKQGSLVKEEFEKPSR-----ETVMGMRHGSYDKL--DDDGIAP 351

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  +   DV I K +PL   G+      +   R+    Q+      E+ +VD+V L ++
Sbjct: 352  PGTRVSAEDVIIGKTTPLPDDGN------EAARRFTKRDQSTSLKHSESGMVDQVLLTTN 405

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
              G   +K  +R  R P++GDKF+SRHGQKG  G    QED PF++ GI PD+I+NPH  
Sbjct: 406  DQGLRFVKMRVRSVRIPQIGDKFASRHGQKGTVGITYTQEDMPFTQEGIVPDIIVNPHAI 465

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G +IE L GK     GR    + F +      TV++IS+ L K G+   G + +
Sbjct: 466  PSRMTIGHLIECLLGKVATHIGREGDATPFTDV-----TVDNISKALHKCGYQMRGFETM 520

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGE 1071
            Y+G TG  LQA IF+GP YYQ+LKHMV DK+H+R  GP  +LTRQP EGRA++GGLR GE
Sbjct: 521  YNGHTGRKLQAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPAEGRAKDGGLRFGE 580

Query: 1072 MERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS 1131
            MERDC+IA+GA+  + ERL   SD + V VC +CGL+   N K     C  CKN  +I  
Sbjct: 581  MERDCMIAHGAAHFMKERLFDQSDAYRVHVCEICGLIAIANLKKGTFECRGCKNKTDIVQ 640

Query: 1132 MKLPYACKLLIQELQSMNIVPRL 1154
            + +PYACKLL QEL +M I PR+
Sbjct: 641  VHIPYACKLLFQELMAMAIAPRM 663


>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Taphrina deformans]
          Length = 936

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 314/893 (35%), Positives = 477/893 (53%), Gaps = 97/893 (10%)

Query: 242  IPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI++V +A+G+  D++++  +    +D +   +L P IEE     I  +E AL+++ GK
Sbjct: 74   IPIVIVFRALGVVPDRDILDHICYDAKDRQMLEMLKPCIEEA--FVIQDREVALDFI-GK 130

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
             + S  G     R   A  IL+   L ++         K F++  M+ R++   L +   
Sbjct: 131  -RGSAIGVTKEKRLRYAQDILQKEMLPHITTSEGFETRKAFFLGYMVHRLLLCALERRDP 189

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KR++L+G L++ LF  LFK +  ++++ +   +        F+L   +   +
Sbjct: 190  DDRDHFGKKRIDLAGPLLAGLFRMLFKRLTKDIRQYMTKCVDS---GKEFNLPLAVKHTT 246

Query: 419  ITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL  +L+TG +  ++ +M+ R G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 247  ITNGLRYSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPR 306

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WG++CP +TPEG+ACGLVKNLALM++V+      P+I      G+E LE     
Sbjct: 307  QLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEEWGMESLED---- 362

Query: 538  ELHNPN----SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYI 593
              +NP+    S  +  NG+ LG H  P      +R LRR   I   VSV  + +++ + +
Sbjct: 363  --YNPSAGRPSTKIFVNGVWLGVHSDPGHLVKTLRSLRRKTDISPEVSVVRDIREKELRL 420

Query: 594  ASDGGRVCRPLVI---------ADKGISRIKEHHMKELL--------DGVRSFDDFLREG 636
             +D GRVCRPL +         ++ G   +K+ H++ +         D    +   L  G
Sbjct: 421  FTDAGRVCRPLFVVHDDESAEKSEAGSLVLKKEHVQRMAYSKEHPEDDEKFGWAQVLSNG 480

Query: 637  LIEYLDVNEENNALIALYEGD------------------------------------ATP 660
            + EYLD  EE   +IA+   D                                    A  
Sbjct: 481  IAEYLDAEEEETVMIAMTPDDLEATKHMMAGYVEPEDEKERKIAAEAAKRLRPAVNKAQH 540

Query: 661  DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLL 720
              TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD++  +L
Sbjct: 541  LWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQVRMDTMANIL 600

Query: 721  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVV 780
             YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  
Sbjct: 601  YYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFRSMFY 660

Query: 781  KKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            + Y    +K   + +    +P R      +M+   +       L+DDGL APG  +   D
Sbjct: 661  RVYQDSEEKIDMNQAQEFEKPTRE--TTMKMKRSTYDK-----LEDDGLVAPGTRVSGED 713

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG-----PDGETCVVDRVALCSDKNGD 895
            V + K + L      +      D   RSA QT +         E  ++D+V + ++ +G 
Sbjct: 714  VIVGKTAGL------LKDENLADLASRSATQTKRDVSTQLRSTEAGIIDKVMVSTNSDGH 767

Query: 896  LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 955
              +K  IR T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PDLI+NPH  PSRM
Sbjct: 768  KFVKVRIRATKIPQIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIVPDLIINPHAIPSRM 827

Query: 956  TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGI 1015
            TV  ++E    K G   G     + F +      TVE++S  L + G+   G +++Y+G 
Sbjct: 828  TVAHLVECQLSKVGSLSGFEGDATPFTDV-----TVEAVSNNLREQGYHSRGFEIMYNGH 882

Query: 1016 TGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            TG  L A +F+GP YYQ+LKH+V DK+HAR  GP  +LTRQP EGRAR+GGLR
Sbjct: 883  TGRKLMAQVFLGPTYYQRLKHLVDDKIHARARGPMQILTRQPVEGRARDGGLR 935


>gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subunit, partial [Artemia salina]
          Length = 862

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 322/896 (35%), Positives = 493/896 (55%), Gaps = 80/896 (8%)

Query: 186  LLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG---------- 229
            L+ QE+++ N V +   K      K  I + + +S+  V +  V  M KG          
Sbjct: 1    LIAQEKMATNTVYVFALKDSKYCYKTEIRSCIENSSRPVSTLYVNMMAKGGQNLKKSAIG 60

Query: 230  -KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDI 285
             ++  ++    ++IPIM+V +A+G  +D+++++ +     DP    ++ PS++E     I
Sbjct: 61   QRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYEFDDPEMMEMVKPSLDEA--FVI 118

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
              Q  AL ++  +  R   G   + R   A  IL+   L +V + +     K +++  M+
Sbjct: 119  QEQNVALNFIGARGARP--GVTKDKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMV 176

Query: 346  RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSK 401
             R++ A L +  +DD+D+ GNKRL+L+G L+SLLF  LFKT+  EV    QK +D     
Sbjct: 177  HRLLLAALGRRELDDRDHYGNKRLDLAGPLMSLLFRGLFKTLTKEVRMYAQKFID----- 231

Query: 402  PSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHM 460
              R   F++   I    IT GL+ +L+TGN+ D K+    R G++QVL RL+F  TL H+
Sbjct: 232  --RGKDFNIELAIKPKFITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHL 289

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
             RV+    +  K++ PR L  + WGM+CP +TPEG A GLVKNLALM +++   +  P++
Sbjct: 290  RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 349

Query: 521  SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEF 579
                   +E+LE ++   + +     V  NG  +G HR P+     +RKLRR   I    
Sbjct: 350  EFLEEWSMENLEEIAPSAIADATKIFV--NGCWVGIHRDPEQLMTTLRKLRRQMDIIVSE 407

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRS---FDDFLREG 636
            VS+  + + R + I +D GR+CRPL+I +     +K+ H+++L +   +   ++D +  G
Sbjct: 408  VSMVRDIQDREIRIYTDAGRICRPLLIVENQRLLLKKTHIEQLKEKEYNNFVWNDLVASG 467

Query: 637  LIEYLDVNEENNALIALYEGDATPDT-------THIEIEPFTILGVIAGLIPYPHHNQSP 689
            ++EY+D  EE  A+IA+   D   D        TH EI P  ILGV A +IP+P HNQSP
Sbjct: 468  VVEYVDTLEEETAMIAMAPDDIRLDNEGYCATYTHCEIHPAMILGVCASIIPFPDHNQSP 527

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + + +L AG N+ V
Sbjct: 528  RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLCYPQKPLVTTRSMEYLRFRELPAGINSIV 587

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK--YANSTSDRILRPDR-TGP 806
            A++ Y+GY+ ED+++MN S++DRGF R +  + Y     K   A ++ +   +P R T  
Sbjct: 588  AILCYTGYNQEDSVLMNASAVDRGFFRSVFFRSYKDAETKRAMAGASEETFEKPSRDTCQ 647

Query: 807  GAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 866
            G +  Q           LD+DG+ APG  +  +DV I K        ++  P  + D   
Sbjct: 648  GMKHPQSYDK-------LDNDGIIAPGIRVSGDDVVIGK--------TVTMP--ENDDEL 690

Query: 867  RSARQTYKGPD-------GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHG 919
             SA + Y   D        ET + D+V L  +  G    K  +R  R P++GDKF+SRHG
Sbjct: 691  SSAAKRYSKRDCSTFLRNSETGITDQVMLTLNTEGFKFCKIRVRSVRIPQIGDKFASRHG 750

Query: 920  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 979
            QKG CG   +QED PFS  G  PD+I+NPH  PSRMT+G +IE + GK  VS  +   G 
Sbjct: 751  QKGTCGIQYRQEDMPFSAEGTAPDIIINPHAIPSRMTIGHLIECIQGK--VSANKGEIGD 808

Query: 980  AFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            A   P   A  V+ IS  L  +G+   G +++Y+G TG  L + +F+GP YYQ+LK
Sbjct: 809  A--TPFNDAVNVQKISNLLQDYGYQLRGNEVMYNGFTGRKLVSQVFLGPTYYQRLK 862


>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
          Length = 934

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 327/956 (34%), Positives = 516/956 (53%), Gaps = 92/956 (9%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTET-VKSKTVIQM--------EKG 229
            +EKVL+ QE+ + N V +     G   +  A + S+ E   +  + +QM        EKG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKGSPEKG 60

Query: 230  KMY----LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECAN 282
            ++     + L    + + + +V +A+G+ SD++++  +  D   + +L    P IEE   
Sbjct: 61   RLANTVSVTLPYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEA-- 118

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
              I  +E AL+++ GK      G    +R   A  +L+   L ++         K F++ 
Sbjct: 119  FCIQDREIALDFI-GKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLG 177

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ R+++  L +   DD+D+ G KRL+L+G L++ LF ++ + M  ++   +   +   
Sbjct: 178  YMVHRLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRNVIRRMTQDLMSYMKRCIDT- 236

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
              +  F L+  I   ++T GL+ +L+TGN+ D K+      G++QVL R +F  TL H+ 
Sbjct: 237  --NKNFSLALGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLR 294

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  + WG++CP DTPEG+ACGLVKNL+LM +V+      P++ 
Sbjct: 295  RTNTPIGRDGKLAKPRQLHNTHWGLVCPADTPEGQACGLVKNLSLMCYVSVGTPADPIVE 354

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                 G+E LE    E L  PN+  V  NG  +G H+ PK    +++ LRR   I   VS
Sbjct: 355  FMIARGMEVLE--EYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQGLRRKNVISFEVS 412

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVI----------ADKGISRIKEHHMKEL-LD------ 624
            +  + + R   I SD GRV RPL            A+KG   + + H+ +L LD      
Sbjct: 413  LVRDIRDREFKIFSDAGRVMRPLFTVEQEPNGESGAEKGALILNKEHIGKLKLDTEYGKY 472

Query: 625  --GVRSFDDFLREGLIEYLDVNEENNALIAL---------------YEGDAT-------- 659
                  +   L+ G IEYLD  EE   +I +               +E D +        
Sbjct: 473  HPDYWGWQGLLKSGAIEYLDAEEEETVMICMTPQDLDQFRARKQGRFEQDNSGLGNNRIK 532

Query: 660  ----PDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                P T   TH EI P  +LG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 533  TKPNPITHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRR 592

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DR
Sbjct: 593  MDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDR 652

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R +  + YT   ++   +  ++  +P+R+    + +++ H +      LD DG+ AP
Sbjct: 653  GIFRSLFFRSYTDCEKRVGINIVEQFEKPNRS----DTLRLKHST---YDKLDADGIVAP 705

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +   D+ I K  P+    + +   GQ  +++     +      E+ ++D+V + +++
Sbjct: 706  GIRVSGEDIIIGKTCPINPDNAEL---GQRSNQHVKRDASTPLRSTESGIIDQVVVTTNQ 762

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +G   +K  +R T+ P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  P
Sbjct: 763  DGMRYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIP 822

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMT+  +IE L  K     G     + F +      TV+S+S+ L +HG+   G +++Y
Sbjct: 823  SRMTIAHLIECLLSKVSTLKGMEGDATPFTDV-----TVDSVSDLLREHGYQSRGFEIMY 877

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
             G TG  L++ +F GP YYQ+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR
Sbjct: 878  HGHTGRKLRSQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLR 933


>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
 gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
            insculpta]
          Length = 936

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 325/966 (33%), Positives = 509/966 (52%), Gaps = 110/966 (11%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKGN-------INASVTSSTETVKSKTVIQMEKG----- 229
            +EKVL+ QE+ + N V +   KKG+       I ++V   +  + S  +    KG     
Sbjct: 1    SEKVLIAQERSAANIVQV-FRKKGSPTPVVAEIRSAVEKGSRLISSMQLKLFSKGDSQKG 59

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECAN 282
                 +   L      IPI +V +A+G+ SD +++  +     D +   ++ P +EE   
Sbjct: 60   GLGGTIKATLPYIKSDIPIAIVFRALGVVSDMQILDCICYDANDSQMREMIKPCLEEA-- 117

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCF 339
              I  +E AL+++  +      G     RE R   A  +++  FL ++     +   K F
Sbjct: 118  FVIQDREVALDFIGKR------GQQMGTREXRIRYARDVMQKEFLPHISQKEGSETRKAF 171

Query: 340  YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIIL 399
            ++  M+ R+++  L +   DD+D+ G KRL+L+G L++ +F   F  +I + +    + L
Sbjct: 172  FLGYMINRLLQCALGRVEEDDRDHFGKKRLDLAGPLMAQVFRLKFTQLIRDTR----VYL 227

Query: 400  SKPSRSSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTL 457
            S+     + F+L+  +  + ++ GL   L+TGN+ D K+    + G++QVL R ++  TL
Sbjct: 228  SRCVEGGKEFNLTLAVKANILSSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTL 287

Query: 458  GHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEG 517
             H+ R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +V+      
Sbjct: 288  SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPSE 347

Query: 518  PLISLCYCLGVEDLELLSG-EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
            P+I     +   ++ELL   E  +NP++  V  NG+ +G HR P     V++ LRR+G I
Sbjct: 348  PIIEF---MNQRNMELLEEYEPKNNPDATKVFVNGVWVGVHRDPAQLVKVVQSLRRSGTI 404

Query: 577  GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMK------ELLDGVRSFD 630
               +S+  + + R   I +D GRV RPL + D   +  +  H+       E L   R  D
Sbjct: 405  SFEISLIRDVRDREFKIFTDAGRVMRPLFVVDNEPTSERRGHLVLARSNIERLQTDREMD 464

Query: 631  -----------------DFLREGLIEYLDVNEENNALIALYEGD---------------- 657
                               + +G+IEYLD  EE  A+I +   D                
Sbjct: 465  LTGLSEEQRDSNIYGWKGLIGDGIIEYLDAEEEEAAMITMSPEDLDEHRQVRAGAPVYDD 524

Query: 658  ----------ATPDT-----THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
                      A P+      TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 525  VGLDPHRRFKAKPNQSVRMWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 584

Query: 703  GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
            G    N   RMD++  +L YPQ+PL TTR++E + + +L AGQNA VA+  Y GY+ ED+
Sbjct: 585  GVTLTNYNVRMDTMANVLYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYGGYNQEDS 644

Query: 763  IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLL 822
            ++MN+SS+DRG  R +  + Y    ++   S  ++  +P R    A+ +++ H +     
Sbjct: 645  VIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPTR----ADTLRMKHGT---YD 697

Query: 823  ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 882
             LDDDG+ +PG  +   D+ I K +P+      +   GQ    +     +      E+ +
Sbjct: 698  KLDDDGIISPGSRVSGEDIIIGKTAPMAPDAEEL---GQRTKLHVKRDVSTPLRSTESGI 754

Query: 883  VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 942
            +D+V L ++ +G   +K   R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ P
Sbjct: 755  IDQVLLTTNIDGHKFVKVRTRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGLVP 814

Query: 943  DLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHG 1002
            DLI+NPH  PSRMT+  +IE L  K G   G+    + F +      T+  +S+ L  HG
Sbjct: 815  DLIINPHAIPSRMTIAHLIECLLSKVGALRGQEGDATPFTDV-----TITQVSDLLRAHG 869

Query: 1003 FSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1062
            F   G +++Y+G TG    A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRA
Sbjct: 870  FQQRGFEIMYNGHTGKKQVAQVFLGPTYYQRLRHMVDDKIHARARGPXQILTRQPVEGRA 929

Query: 1063 RNGGLR 1068
            R+GGLR
Sbjct: 930  RDGGLR 935


>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
          Length = 873

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 326/894 (36%), Positives = 478/894 (53%), Gaps = 68/894 (7%)

Query: 101 LNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTTMEKND---VVIGRIPIMLRSCRCVL 155
           L P   RL ++TY+AP+ V++    ++  H  +   E  D   V IG++PIMLRS  C +
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTV 64

Query: 156 YGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA------ 209
           Y   E +L  LGECP D GGYFII G+EKVL+ QE++S N V +   ++ N  A      
Sbjct: 65  YQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124

Query: 210 SVTSSTETVKSKTVIQM---------EKGKMYLLLNQFVK-KIPIMVVMKAMGMESDQEV 259
           S+  S     S   ++M           G+       +++ +IPI++V +A+G  +D+++
Sbjct: 125 SMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDI 184

Query: 260 VQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316
           ++ +     D +   LL PS+EE     I   + AL+Y+ GK + ST G     R   A 
Sbjct: 185 LEHICYDFSDTQMMELLRPSLEEA--FVIQNHQVALDYI-GK-RGSTVGVTREKRIKYAK 240

Query: 317 SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376
            IL+   L +V V       K +Y   ++ R++   L +   DD+D+ GNKRL+L+G L+
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300

Query: 377 SLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432
             LF  LF+ +  +V    QK VD            +L   I   +IT GL+ +L+TGN+
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVD-------NGKDVNLQFAIKAKTITSGLKYSLATGNW 353

Query: 433 DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
                   R G++QVL RL++  TL H+ R++    +  K++ PR L  S W M+CP +T
Sbjct: 354 GQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWXMMCPAET 413

Query: 493 PEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGL 552
           PEG+ACGLVKNLALM ++T      P++        E+ E +S   +  P +  +  NG 
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI--PQATKIFVNGC 471

Query: 553 ILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS 612
            +G HR P      +R+LRR   +   V V  + + + + + +D GR  RPL I +K   
Sbjct: 472 WVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531

Query: 613 RIKEHHMKELLDGVR----SFDDFLREGLIEYLDVNEENNALIALYEGD----------A 658
            IK+  ++ L          + D + +G IEY+D  EE   +I++   D          A
Sbjct: 532 LIKKKDIQALQQRESHEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITARLNPEEA 591

Query: 659 TPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
             +T TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N   RMD+L 
Sbjct: 592 YSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLA 651

Query: 718 YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
           Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS+DRGF R 
Sbjct: 652 YVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRS 711

Query: 778 IVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIK 837
           +  + Y    +K      +   RP+R       M + H S      LDDDGLA PG  + 
Sbjct: 712 LFFRSYRDEEKKMGTLVKEDFGRPNRENT----MGMRHGS---YDKLDDDGLAPPGTRVS 764

Query: 838 PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897
             DV I K +P+    S     GQ  SRY     +      E+ +VD+V L ++ +G   
Sbjct: 765 GEDVIIGKTTPI----SQDDAQGQA-SRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRF 819

Query: 898 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
           +K  +R  R P++GDKFSSRHGQKG  G    QED P++  GI PD+I+NPH  
Sbjct: 820 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 873


>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
            elegans]
          Length = 859

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 312/885 (35%), Positives = 492/885 (55%), Gaps = 61/885 (6%)

Query: 186  LLIQEQLSKNRVIIDTDKKGNI------NASVTSSTETVKSKTVIQMEKG---------- 229
            L+ QE+++ N V + + K G         + + +S+    +  V  + +G          
Sbjct: 1    LIAQEKMATNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMG 60

Query: 230  -KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDI 285
             ++  +L    ++IPIM+V +A+G  SD++++  +     DP    ++ PS++E     I
Sbjct: 61   QRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEA--FVI 118

Query: 286  YTQEKALEYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVA 342
              Q  AL ++  +  +     P   RE R   A  IL+   L +V V  +    K F++ 
Sbjct: 119  QEQNVALNFIGARGAK-----PGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIG 173

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ R++ A L +  +DD+D++GNKRL+L+G L++ LF  LF+ ++ E++ T    ++K 
Sbjct: 174  YMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK- 232

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
              +  F L   +   +IT GL  +L+TGN+ D K+    R G++QVL RL++  TL H+ 
Sbjct: 233  --NDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLR 290

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  +QWGM+CP +TPEG+A GLVKNLALM +++      P++ 
Sbjct: 291  RANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILE 350

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFV 580
                  +E+LE +S   + +     V  NG  +G HR P      ++KLRR   I    V
Sbjct: 351  FLEEWSMENLEEVSPSAIADATKIFV--NGAWVGIHREPDQLMTTLKKLRRQMDIIVSEV 408

Query: 581  SVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGV-----RSFDDFLRE 635
            S+  + + R + I +D GRVCRPL+I +     +K+ H+ +L +        ++ D +  
Sbjct: 409  SMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGG 468

Query: 636  GLIEYLDVNEENNALIALYEGDATP----DT-THIEIEPFTILGVIAGLIPYPHHNQSPR 690
            G++E +D  EE  ++IA+   D       DT TH EI P  ILGV A +IP+P HNQSPR
Sbjct: 469  GVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPR 528

Query: 691  NTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVA 750
            NTYQ AMGKQAMG    N   RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA
Sbjct: 529  NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVA 588

Query: 751  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER 810
            ++SYSGY+ ED+++MN S++DRG  R +  + Y        N+  + I +P R     E+
Sbjct: 589  ILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTR-----EK 643

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
               + HS  L   LD+DG+ +PG  +  +DV I K   L      +  +G+   + R A 
Sbjct: 644  CSGMRHS--LYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPK-RDAS 700

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
               +    ET +VD+V L  + +G+  +K  +R  R P++GDKF+SRHGQKG  G + +Q
Sbjct: 701  TFLRS--SETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQ 758

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PF+  G+ PD+I+NPH  PSRMT+G +IE L GK   + G     + F +       
Sbjct: 759  EDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTV----N 814

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1035
            V+ IS  L ++G+   G +++Y+G TG  L   IF GP YYQ+LK
Sbjct: 815  VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLK 859


>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Aspergillus fumigatus]
          Length = 936

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 340/962 (35%), Positives = 508/962 (52%), Gaps = 102/962 (10%)

Query: 182  TEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQMEKG----- 229
            +EKVL+ QE+ + N V +        T     I ++V   +  +   ++    KG     
Sbjct: 1    SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKG 60

Query: 230  ----KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYS---ALLLPSIEECAN 282
                 +   L      IPI+VV +A+G+ SD++++  +  D   +    +L P IEE   
Sbjct: 61   GFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEE--G 118

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPN-DREGR-AFSILRDVFLANVPVHNNNFRPKCFY 340
              I  +E AL+++    KR +  S  N +R  R A  I++   L ++     +   K F+
Sbjct: 119  FVIQDREVALDFI---AKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFF 175

Query: 341  VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
            +  M+ R+++  L +  +DD+D+ G KRL+L+G L++ LF  LF  +  ++Q+ V   + 
Sbjct: 176  LGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVE 235

Query: 401  KPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGH 459
                +    L+  I   ++T GL+  L+TGN+ + K+    + G++QVL+R ++  TL H
Sbjct: 236  T---NREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSH 292

Query: 460  MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPL 519
            + R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNLALM ++T      P+
Sbjct: 293  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPI 352

Query: 520  ISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEF 579
            I       +E LE    E    PN+  V  NG+ +G HR P    + M  LRR   I   
Sbjct: 353  IDFMIQRNMEVLEEF--EPQVTPNATKVFVNGVWVGVHRDPAHLVNTMLSLRRRNMISHE 410

Query: 580  VSVFVNEKQRCVYIASDGGRVCRPLVIADK-------GISRIKEHHMKEL---------L 623
            VS+  + ++R   I +D GRVCRPL + D        G   + + H+++L         L
Sbjct: 411  VSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKDHIRKLEQDKELPADL 470

Query: 624  DG------VRSFDDFLREGLIEYLDVNEENNALIA-----------LYEGDATPD----- 661
            D          +D  ++ G++EY+D  EE   +I            L  G A P+     
Sbjct: 471  DPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEDDPN 530

Query: 662  -------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFN 708
                          TH EI P  ILGV A +IP+P HNQSPRNTYQ AMGKQAMG    N
Sbjct: 531  KRVRSVLSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 590

Query: 709  QLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768
               RM+++  +L YPQ+PL TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+S
Sbjct: 591  FDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQS 650

Query: 769  SLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDG 828
            S+DRG  R +  + YT   +    +  +R  +P R+     R             LD+DG
Sbjct: 651  SIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGTYDK-------LDEDG 703

Query: 829  LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
            + APG  +   D+ I K +PL      +   GQ    +     +      E  +VD+V L
Sbjct: 704  IIAPGVRVSGEDIIIGKTAPLAPEAEEL---GQRTKAHTKLDVSTPLRSTENGIVDQV-L 759

Query: 889  CSDKNGDL-CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMN 947
             S  N DL  +K  +R T+ P++GDKF+SRHGQKG  G   +QED PF+  G+ PDLI+N
Sbjct: 760  VSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLIIN 819

Query: 948  PHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD-TVESISETLVKHGFSYN 1006
            PH  PSRMT+  +IE    K  VS  R   G A    +   D TV+SIS  L +HG+   
Sbjct: 820  PHAIPSRMTIAHLIECQLSK--VSALRGFEGDA----TPFTDVTVDSISRLLREHGYQSR 873

Query: 1007 GKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGG 1066
            G +++Y+G TG  L A +F+GP YYQ+L+HMV DK+HAR  GP  +LTRQP EGRAR+GG
Sbjct: 874  GFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGG 933

Query: 1067 LR 1068
            LR
Sbjct: 934  LR 935


>gi|296421976|ref|XP_002840539.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636757|emb|CAZ84730.1| unnamed protein product [Tuber melanosporum]
          Length = 434

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/468 (56%), Positives = 327/468 (69%), Gaps = 48/468 (10%)

Query: 697  MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
            MGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++ TRTIEL+ YDKL AGQ+A VAVMSYSG
Sbjct: 1    MGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIELIQYDKLPAGQSAIVAVMSYSG 60

Query: 757  YDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI------LRPDRTGPGAER 810
            YDIEDA+V+NK+SLDRGFGRC V +KY+   +KY N  +DRI      L  D   P  E 
Sbjct: 61   YDIEDALVLNKASLDRGFGRCQVFRKYSTTLRKYQNGAADRIGDIKRELSKDPENPD-EL 119

Query: 811  MQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSAR 870
            + +  H+ L       DGLAA GE I   +VY                       Y+ A 
Sbjct: 120  VPIRKHAAL-----QADGLAAVGEKISAGEVY-----------------------YKDAP 151

Query: 871  QTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 930
             TYK  D     +D+V + + ++    IK L R TRRPELGDKFSSRHGQKGVCG I +Q
Sbjct: 152  MTYKLHD--HAYIDKVLVSTSESEQTLIKVLTRQTRRPELGDKFSSRHGQKGVCGIIARQ 209

Query: 931  EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADT 990
            ED PFS+ GI PD+IMNPHGFPSRMTVGKMIELL GKAGV  G+  YG+AFG        
Sbjct: 210  EDMPFSDTGIIPDIIMNPHGFPSRMTVGKMIELLAGKAGVLAGKLQYGTAFG-----GSK 264

Query: 991  VESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPR 1050
            V+ +++ LV +GFSY+GKD + SGITG  L+AYIF GPIYYQKLKHMV DKMH+R  GPR
Sbjct: 265  VDDMAKILVDNGFSYSGKDFVTSGITGESLEAYIFFGPIYYQKLKHMVQDKMHSRARGPR 324

Query: 1051 VMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGY 1110
             +LTRQPTEGR+R+GGLR+GEMERDCLIAYGAS L+ ERLM+SSD  E+ +C VCGL+G+
Sbjct: 325  AILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDVHEIDLCEVCGLMGH 384

Query: 1111 YNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
             N       C+TC++   +  MK+PYA KLLIQEL SMN++ R++L +
Sbjct: 385  SNW------CTTCQSSKGVVKMKIPYAAKLLIQELLSMNVLARIRLED 426


>gi|418204386|gb|AFX61747.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            aggregata]
          Length = 1109

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 355/1128 (31%), Positives = 564/1128 (50%), Gaps = 158/1128 (14%)

Query: 30   DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------SGIDPSIF- 79
            D + ++  F + +GLV Q LDSF+ F    ++++V    ++            +DP +  
Sbjct: 10   DCWTVISSFFETKGLVSQQLDSFDEFATVTMQELVEEQGQVTLDQTLNPDEDEVDPVVVR 69

Query: 80   ---LRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNIE------------- 122
               L+F  V + +PSMT  DG +  + P   RL ++TY++P+ + I              
Sbjct: 70   RYELKFGTVSLARPSMTEGDGATSVMLPQEARLRNLTYSSPMYLKIRKRISEGREKLLSQ 129

Query: 123  ------------------YVQGSHTEKTTME----KNDVVIGRIPIMLRSCRCVLYGKDE 160
                              Y+Q +  EK   E    +  + IG++P+ML+S  C+L   +E
Sbjct: 130  RDEDEEEEEDEDLRAKGTYLQWA--EKPLKEDEPAEESIFIGKMPVMLKSRYCILKDLNE 187

Query: 161  AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII----------------DTDKK 204
              L    ECP D GGYFII G+EKVL+ QE+ + N V I                   +K
Sbjct: 188  QALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAEIRSAVEK 247

Query: 205  GN-----INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK-IPIMVVMKAMGMESDQE 258
            G+     ++  + S T    S    +   G M      +++  IPIM+V +A+G+ SD++
Sbjct: 248  GSRILSQLSIKLFSKTFKATSAATGRDSNGPMIKSTLPYIRDDIPIMIVFRALGVVSDED 307

Query: 259  VVQMVGRDPR---YSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGR- 314
            ++  +  DP       LL P+I+ C  L I  +E AL+++    KR T  S   D+  R 
Sbjct: 308  ILNHICYDPNDLPMLELLKPTIQTC--LCIQEREVALDFI---AKRGTHQSMAQDKRIRF 362

Query: 315  AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQ 374
            A  I++  FL ++     +   K F+   M+ ++++  L +  +DD+D+ G KRL+L+G 
Sbjct: 363  ARDIMQKEFLPHISQSEGSETRKAFFFGYMIHKLLQCALGRRDVDDRDHFGKKRLDLAGP 422

Query: 375  LVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-D 433
            L++ LF  LF  +  ++ + V   +     + +  L+  I   +++ GL+  L+TGN+ +
Sbjct: 423  LLAGLFRTLFMRLTKDLYRYVQRCVET---NRQLHLNIGIKTATLSGGLKYALATGNWGE 479

Query: 434  VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
             K+    + G++QVL R ++  TL H+ R +    +  K++ PR L  + WG++CP +TP
Sbjct: 480  QKKAASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 539

Query: 494  EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
            EG+ACGLVKNL+LM  +T       +I       +E LE    E   +P+   V  NG+ 
Sbjct: 540  EGQACGLVKNLSLMCTITVGSGTAGIIEFLISQHMEVLEEF--EPQVSPDVTKVFLNGVW 597

Query: 554  LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
            +G HR P      ++ LRR   +    S+  + + R   I +D GRVCRPL + D   S 
Sbjct: 598  VGVHRDPSHLVSKVQNLRRQNLLPYETSLVRDIRDREFKIFTDAGRVCRPLFVVDNNPSS 657

Query: 614  -------IKEHHMKEL---------LDG------VRSFDDFLREGLIEYLDVNEENNALI 651
                   + + H+++L         LD          +   +  G+IEY+D  EE   +I
Sbjct: 658  ERCGSLALTKDHIRKLEADKDLPPDLDPEDRRQRYYGWQGLVNSGVIEYVDAEEEETIMI 717

Query: 652  ALYEGD----------ATPDT---------------------THIEIEPFTILGVIAGLI 680
             +   D          A P+                      TH EI P  ILG+ A +I
Sbjct: 718  VMTPEDLDFQKQVRQGARPEDDSYLDPNRRVRNPFTNKVHSYTHCEIHPSMILGICASII 777

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N   RM+++  +L YPQ+PL TTR++E + + +
Sbjct: 778  PFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSMEFLKFRE 837

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT   +K   +  ++   
Sbjct: 838  LPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKKIGVAVVEKFEY 897

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P +     E +++ +H       LD DG+AA G  +  ND+ I K +PL      +    
Sbjct: 898  PSK----EETLRMKNHP---YDKLDHDGIAAVGMHVSGNDIIIGKTAPLAPESEELGQRT 950

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            +  ++   + Q     +G    VD+V + +  +    +K  +R T+ P++GDKF+SRHGQ
Sbjct: 951  KQHTKLDVSTQLRSTENGH---VDQVLVSTSSDDLKFVKVRMRTTKIPQIGDKFASRHGQ 1007

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G    QED PF+  G+ PDLI+NPH  PSRMT+  +IE    K  VS  R   G A
Sbjct: 1008 KGTIGITYCQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK--VSALRGFEGDA 1065

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMG 1027
                +   D TV+S+S  L +HG+   G +++Y+G TG  L A +F+G
Sbjct: 1066 ----TPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLG 1109


>gi|398257095|gb|EJN40703.1| DNA directed RNA polymerase subunit 2 [Acanthamoeba polyphaga
            lentillevirus]
          Length = 1192

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 387/1214 (31%), Positives = 620/1214 (51%), Gaps = 134/1214 (11%)

Query: 32   FQLLPEFLKV--RGLVKQHLDSFNYFVNTGIRKIVRANDRIVS--GIDPSIF---LRFKD 84
            F LL  F +   + LVK H+DSFN F+   I  I++  D ++S    +  I    L F D
Sbjct: 21   FALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKIIRYRLTFND 80

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS---HTEKTTME-----K 136
            + I  P  T++     L P       ++Y+A     +   Q      T+KT        +
Sbjct: 81   LGIKPP--TLENEENLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPE 138

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
             DV I +IPIM+ S  C L  + +        C  D GGYFI+ G+EKV+L  E +   +
Sbjct: 139  KDVPIAKIPIMVLSKYCNLTLRPDIAGK---HCKYDAGGYFIVNGSEKVVLSVESMIPRK 195

Query: 197  VIIDTDKKGN-----INASVTSSTETVKSKTV--IQMEKGKMYLLLNQFVKKIPIMVVMK 249
             ++ T +  N     +      +++ V +  +  ++M++    +L     K++ I   ++
Sbjct: 196  PVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIR 255

Query: 250  AMGMESDQEVVQMVGRDPRYSALLLPSIEEC---ANLDIYTQEKALEYLEGKVKRS-TF- 304
            A+G+E+D+++V  +  D +    LL  +  C   +N    T+E+ALE +  ++K + TF 
Sbjct: 256  ALGIETDEDIVDSI-LDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFT 314

Query: 305  GSPPNDREGRAFSILRDVFLANVPVH--NNNFRP------KCFYVAVMLRRMVEAML--- 353
             + P  +  +    L  +    V  H  +    P      K  Y+  M+ ++++  L   
Sbjct: 315  DTNPEVKAEQRRRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGA 374

Query: 354  ----NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK---TVDIILSKPSRSS 406
                     DD+D + NKR++L+G+L+  LF+  +  M+++  K   T +I   KP    
Sbjct: 375  REVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP--- 431

Query: 407  RFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-SP 465
              ++   I  +SI  GL + LSTGNF  +     RKG++Q+L R++ + +L +M RV +P
Sbjct: 432  --NIIPHIKPNSIEQGLRQALSTGNFGSQS----RKGLSQMLNRMNHLHSLSYMRRVITP 485

Query: 466  QFEKSR-KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
              + S  K++ PR L  +Q+G +CP ++PEG   GLVKN+A+M  +T +      I   Y
Sbjct: 486  TVDASTMKMTSPRHLHNTQYGSMCPLESPEGPKTGLVKNMAMMEGITINMNSQIPIIESY 545

Query: 525  CLG-VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVF 583
             +G +  LE  + + LH      V  NG  LG  R      + +R +R  G++   V + 
Sbjct: 546  LIGKITTLESANKKRLHQ--YVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGLV 603

Query: 584  VNEKQRCVYIASDGGRVCRP-LVIADKGISRIKEHHMKELLDGVRSFDDFLRE--GLIEY 640
            +N K    +I +DGGR+ RP L + D      K +   E+LD V S+++FL +   +IEY
Sbjct: 604  LNYKTAEFHIYTDGGRLIRPYLTVTDN-----KLNFKPEMLDEVNSWEEFLAKFPEVIEY 658

Query: 641  LDVNEENNALIAL-------------------------------YEGDATPDTTHIEIEP 669
            +D  EE N ++A+                               Y+ +     TH EI P
Sbjct: 659  VDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIHP 718

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
              ILG+I+  IP+P HNQSPR  +Q    +QAMG    +   R D + Y+L +PQ PL+T
Sbjct: 719  CMILGLISSNIPFPDHNQSPRGIFQYNQARQAMGLYISDYRERTD-ISYILYHPQIPLVT 777

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            +R  +  G     AG+N+ VA+ SY+GY+ ED++V+N S++ +G+ R   +KKY  I +K
Sbjct: 778  SRASKYTGTHIFPAGENSIVAIASYTGYNQEDSLVINDSAIQKGYMRAQALKKYMEIIKK 837

Query: 790  Y-ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP 848
              A+S +   ++PDR     + ++  ++  L      ++G A    +I+  DV I   +P
Sbjct: 838  NPASSQTSIFMKPDRNK--VDNLRDANYDKL-----SEEGYAKVETVIRDGDVVIGIVNP 890

Query: 849  LETRGSIMSPTGQTDSR-YRSARQTYKG--PDGETCVVDRVALCSDKNGDLCIKFLIRHT 905
                     PT + D + Y+ A   YK   P      VD+V    + +G   IK  IR  
Sbjct: 891  --------KPTAREDEKQYKDASSIYKSLIPGA----VDKVITEVNNDGYPIIKMRIRSE 938

Query: 906  RRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG 965
            R P +GDKFSSR GQKG  G    + D  FS+ G+ PD+I+NP+  P RMT+G++IE L 
Sbjct: 939  RIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLL 998

Query: 966  GKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIF 1025
            GK     G   YG A   P    D + +I++ LV  G+   G + +Y+G+ G  L   IF
Sbjct: 999  GKLCAVKGV--YGDA--TPFTSVD-LNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIF 1053

Query: 1026 MGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASML 1085
            +GP YYQ+LK MV DK H+R  GP  +LTRQ  EGR+R+GGLR+G MERD L A+G +  
Sbjct: 1054 IGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIG-MERDALCAHGVAQF 1112

Query: 1086 IFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145
            + E+ + +SD +   VC  CG   +   + K   C+ C+N  +IS + +PYA KLL+QEL
Sbjct: 1113 LKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQEL 1172

Query: 1146 QSMNIVPRLKLAEA 1159
             S+NI+ +++ ++ 
Sbjct: 1173 ASINILGKIRTSKT 1186


>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
            trigonosporus]
          Length = 937

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 306/884 (34%), Positives = 479/884 (54%), Gaps = 77/884 (8%)

Query: 240  KKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECANLDIYTQEKALEYLE 296
            ++ PI ++ +A G+ SD++++  +  D   S +L    P IEE  +  +  +E AL+++ 
Sbjct: 75   EETPIALIFRAYGVVSDEDILNHICYDRNDSQMLEMLKPCIEE--SFVVQDREVALDHIG 132

Query: 297  GKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
             + ++  F    + R   A  IL+   L ++     +   K F++  M+ ++++  L + 
Sbjct: 133  KRGQQGGFALTRDKRIRTAKEILQKETLPHISQAEGSETRKAFFLGYMVHKLLQCALGRR 192

Query: 357  AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
             +DD+D+ G KRL+L+G L+S LF ++ + M +E+   + + +     +  F +SQ I  
Sbjct: 193  DVDDRDHFGKKRLDLAGPLLSKLFRNIMRRMNTELTSYMKMCIQN---NRNFQISQGIRI 249

Query: 417  DSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSG 475
             ++T G++ +L+TGN+ D K+      G++QVL R +F  TL H+ R +    +  K++ 
Sbjct: 250  TTLTNGMKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK 309

Query: 476  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLS 535
            PR L  + WG++CP +TPEG+ACGLVKNL+LM  V+      P+        +E +E   
Sbjct: 310  PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPTDPIEEFMIDREMEIVE--E 367

Query: 536  GEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIAS 595
             E L  PN+  V  NG  +G H+ P+   + M K RR       VS+  + + R   + S
Sbjct: 368  YEPLRFPNATKVFVNGAWVGVHQEPQRLMEEMIKARRVNSFPAEVSLVRDIRDREFKVFS 427

Query: 596  DGGRVCRP------------------LVIADKGISRIKEHHMKELLDGVRSFDDFLREGL 637
            D GRV RP                  LV++ + ++++ E            ++D +R G 
Sbjct: 428  DAGRVMRPVFVVNRENNEYEGVQKGTLVLSKEQVAQLTEERDLPTEQRKLKWEDLVRSGA 487

Query: 638  IEYLDVNEENNALIAL------------YEG------------------DATPDT---TH 664
            +EYLD  EE  A+I +             EG                  D  P T   TH
Sbjct: 488  VEYLDAEEEETAMICMTPEDLELFRQTKVEGHQVPPPNINDEPNRRLKTDLNPTTYTYTH 547

Query: 665  IEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQ 724
             EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N + RMD++  +L YPQ
Sbjct: 548  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYMRRMDTMANILYYPQ 607

Query: 725  RPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT 784
            +PL TT  +E + + +L AGQNA VA+  YSGY+ ED+++MN+SS+DRG  R +  + YT
Sbjct: 608  KPLATTMAMEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYT 667

Query: 785  AINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYIN 844
               ++   +  ++  +P R    +E +++ H +      LD+DG+ APG  +   D+ I 
Sbjct: 668  DCEKRVGINLLEQFEKPFR----SETLRLKHGT---YDKLDEDGIVAPGVRVSGEDIIIG 720

Query: 845  KESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRH 904
            K SPL      +   GQ  +++     +      E+ +VD V   ++ +G   +K  +R 
Sbjct: 721  KTSPLSPESQEL---GQRTTQHTQRDASTPLRSTESGIVDSVVFTTNADGMKYVKVRVRT 777

Query: 905  TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 964
            T+ P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+  +IE L
Sbjct: 778  TKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECL 837

Query: 965  GGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYI 1024
              K     G     + F +      TV+S+S  L   G+   G +++Y+G TG  L+A +
Sbjct: 838  LSKVATLKGLEGDATPFTDV-----TVDSVSALLRAEGYHSRGFEIMYNGHTGKKLRAQV 892

Query: 1025 FMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            F GP YYQ+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR
Sbjct: 893  FFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLR 936


>gi|73671121|ref|YP_307136.1| DNA-directed RNA polymerase subunit B' [Methanosarcina barkeri str.
            Fusaro]
 gi|72398283|gb|AAZ72556.1| DNA-directed RNA polymerase, subunit B' [Methanosarcina barkeri str.
            Fusaro]
          Length = 604

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 273/616 (44%), Positives = 368/616 (59%), Gaps = 21/616 (3%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++G H  P    D +RK+RR G I   V+V +N   R V I SD GR  RPL++
Sbjct: 6    VFINGELVGTHDNPAELVDELRKMRRQGFISRQVNVALNSNTREVIINSDMGRARRPLIV 65

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G  R+ E H++++ +   +FDD ++EG IEYLD  EE NA IALYE D     TH+E
Sbjct: 66   VENGAPRVTEEHVEKIKNKEITFDDLVKEGCIEYLDAEEEENAYIALYEADLNSKHTHME 125

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P  ILG+  G++PYP HN SPRNT   AM KQ +G    NQ  R D+  ++L YPQR 
Sbjct: 126  IDPELILGISTGMVPYPEHNASPRNTMGAAMIKQCIGVATANQKLRPDTRAHVLHYPQRA 185

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            +  TRT E +G+D   AGQN  VA++SY GY+IEDA++ NK S++RG GR   ++ +   
Sbjct: 186  MTRTRTSEAIGFDDRPAGQNFVVAILSYEGYNIEDALIFNKGSIERGLGRSHFLRTFEGE 245

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             ++Y     D+   PD    GA   +   ++N     LD DGL  P   + PNDV I K 
Sbjct: 246  ERRYPGGQEDKFEIPDSEYRGARSAEA--YAN-----LDTDGLVNPETPVGPNDVLIGKT 298

Query: 847  SP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
            SP   LE      S  G +  + R +  T +    ET +VD V L    NG    K  +R
Sbjct: 299  SPPRFLEE----PSDFGISVEQRRESSITMR--SNETGIVDTVILTESINGTRLAKVKVR 352

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              R P++GDKF+SRHGQKGV G  V   D PF+E G+ PDL++NPH  PSRMTVG ++E+
Sbjct: 353  DERIPDIGDKFASRHGQKGVIGLKVPIADMPFTESGLTPDLMINPHAIPSRMTVGHVLEM 412

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            +GGK G   GR    +AF       +  E + E L +HGF++ GK++ Y G TG  + A 
Sbjct: 413  IGGKVGSMEGRRVNATAFS-----GENEEDLREALKRHGFAHTGKEVFYDGATGKMIPAD 467

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F+G I YQKL HMV  KMHAR  GP  +LTRQPTEGRAR GGLR GEMERD L+ +GA+
Sbjct: 468  VFVGVILYQKLHHMVTSKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLVGHGAA 527

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
            M + ERL+  SD     VC  CG++  Y+ +     CSTC    +I  +++ YA KLL+ 
Sbjct: 528  MSLKERLLDESDKVVELVCSHCGMIATYDKQRNVAFCSTCGADTDIYPVEMSYAFKLLLD 587

Query: 1144 ELQSMNIVPRLKLAEA 1159
            E++S+ + PRLKL +A
Sbjct: 588  EIKSLGVAPRLKLEDA 603


>gi|357289743|gb|AET73056.1| RNA polymerase II [Phaeocystis globosa virus 12T]
 gi|357292543|gb|AET73879.1| RNA polymerase II [Phaeocystis globosa virus 14T]
          Length = 1428

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 367/1246 (29%), Positives = 580/1246 (46%), Gaps = 188/1246 (15%)

Query: 44   LVKQHLDSFNYFVNTGIRKIVRAND--RIVSGIDPSIF------------LRFKDVRIGQ 89
            L++ HLDS+N F N  I  I+  N+  +I+   DP               L+   +  G+
Sbjct: 23   LIRHHLDSYNDFFNNKIFNILNENNPMKILKDQDPDTKEYKLQADVYFGGLKGDQLYFGK 82

Query: 90   PSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND----VVIGRIP 145
            P +  +     + P+  RL +M+Y+  + +++  V     +   +E       +  G+ P
Sbjct: 83   PVIYDEDRQHYMYPNEARLRNMSYSTTLHMDVVIVYREMKDGKIVESEHTMPRIYFGKFP 142

Query: 146  IMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD--- 202
            IML S  C+L   D      +GEC  D GGYFII G EK L+ QE+ + N   I  D   
Sbjct: 143  IMLNSDLCILNKLDATAKFNMGECKNDNGGYFIIDGKEKALINQEKFADNMFYIREDYNE 202

Query: 203  ---KKGNINASVTSSTETVKSKTV------IQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253
                   I +    +++ V++ +V       + + G + + +    K IP+ +VM+A+G+
Sbjct: 203  IYSHSAEIRSVSEDASKPVRTLSVRIVRPSPKYKNGNIVVNIPNVRKPIPLFIVMRALGI 262

Query: 254  ESDQEVVQM----VGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPN 309
             SD+ +++     + R   Y  L +PSI +  N  I+ QE AL+Y+    K  T      
Sbjct: 263  VSDKAIIEYCLLDLERYENYIDLFVPSIHDAGN--IFNQEVALKYIATFTKGKTLS---- 316

Query: 310  DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRL 369
                    IL D F+ +V    NNF  K +++  M+  +++  +      D+D    KR+
Sbjct: 317  ----HVLEILMDYFMPHVG--ENNFIDKGYFLGYMVNEILKVYMGDKKATDRDSFKFKRI 370

Query: 370  ELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLST 429
            E +G L+  LF++ +K     + +T+D          + D    I  +   +  E+ L  
Sbjct: 371  ESTGSLIFDLFKEYYKIQHKHIFQTIDKEYYYKQGIYQDDFKSLIQSNQNEIFKEKILDR 430

Query: 430  GNFDVKRFKMHRKG------------MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            G      F+   KG            + Q L RLSF   + H+ + +   + S KV GPR
Sbjct: 431  G------FRQAFKGSWGSEAHTKRPEVIQDLNRLSFNAAISHLRKFNLPLDASAKVIGPR 484

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCL-GVEDLELLSG 536
             L  SQWG++ P D+P+G   GL K+++L   +T      P+I L   L  +E L   + 
Sbjct: 485  LLHSSQWGIIDPVDSPDGGNIGLHKHMSLGAFITNGYSSKPIIELLRNLVFMEILTECTT 544

Query: 537  EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
            E +   +   V  NG  +G    P+   D+++K RR G I  + S+  +  +  +YI +D
Sbjct: 545  EYISKSSKVFV--NGAWVGVVTDPEAVMDILKKYRRLGLIPMYTSISWSIIEDTIYIYTD 602

Query: 597  GGRVCRPLV-IADKGISRIKEHHMKELLDGVRSFDD-----------------FLRE--- 635
             GR+CRP+  I D  IS  K   + +LLD   +F D                 F++    
Sbjct: 603  AGRLCRPVFYIEDNQISYNKAKVLNKLLDEDYTFSDLLIGFNTFKKTNVDKKGFIKSNSV 662

Query: 636  --------------------------------GLIEYLDVNEENNALIALYEGDATPDTT 663
                                            G+IEYLD  E    LIA  E +    TT
Sbjct: 663  YSNISDLYSVTENEGITIESKDKILEKLLETPGVIEYLDTAEAETTLIATTEENINKFTT 722

Query: 664  HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
            HIEI P  +LGV+   I +P +NQ PR+ + C   KQ +     N   R+D +  +L   
Sbjct: 723  HIEIHPSLLLGVMGNQIVFPENNQLPRDVFSCGQSKQGVSLYHSNHQNRIDKMGVVLNNG 782

Query: 724  QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKY 783
            Q PL+ +R ++ +  ++   G NA VA+ SY GY++ED+I+ N+ S+ RG      +  Y
Sbjct: 783  QIPLVKSRFLKYINNEQHPYGVNAIVAIGSYGGYNVEDSILFNEGSVKRGMFNTTYLNSY 842

Query: 784  TA-----------INQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
             A           ++ K+AN  S+ ++      PG +  +           LD+ GL   
Sbjct: 843  EAREESTKVASGSMDTKFANIESEPVIG---KKPGYDYSE-----------LDEYGL--- 885

Query: 833  GEIIKPNDVYINKESPLETR----GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 888
                      I + +PL+ +    G + +     D+    +    KG  G    VD+  +
Sbjct: 886  ----------IRENTPLDDKKVIIGKVTTDMENPDNYIDGSVTPKKGQLG---FVDKSFI 932

Query: 889  CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 948
               + G    K  IR  R P +GDKF SR GQKG  G I+ ++D PF+  G+ PDLI+NP
Sbjct: 933  TDGEEGYRIAKVRIREERVPAMGDKFCSRCGQKGTVGLIIPEKDMPFTSEGVRPDLIINP 992

Query: 949  HGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGK 1008
            H  PSRMT+G++IE L GKA  + G F   +AF           S+ + +   G++ +G 
Sbjct: 993  HALPSRMTIGQLIETLMGKACATYGGFGDCTAFANKGPKHQVFGSLLKDI---GYNSSGN 1049

Query: 1009 DMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            +++YSG +G  L A +F+GP YY +LKHMV DK++ R  GPR +LTRQ  +GR+ +GGLR
Sbjct: 1050 EVLYSGESGEQLHAELFIGPCYYMRLKHMVKDKINYRAQGPRTVLTRQTVQGRSNDGGLR 1109

Query: 1069 VGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICS------- 1121
            +GEMERDC+IA+GA+  + E ++   D + V VC   G +  YN      I         
Sbjct: 1110 IGEMERDCMIAHGATTFLTESMLKRGDEYYVAVCNNSGTIAVYNETKNIFISPFADGPVK 1169

Query: 1122 -------------TCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154
                           K G + S +++PY+ KLL+QELQ MNI  R+
Sbjct: 1170 FNTNMEDELNVEVVTKYGRDFSIVRVPYSFKLLMQELQVMNIQMRI 1215


>gi|154316380|ref|XP_001557511.1| hypothetical protein BC1G_04121 [Botryotinia fuckeliana B05.10]
          Length = 450

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/462 (56%), Positives = 324/462 (70%), Gaps = 22/462 (4%)

Query: 697  MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
            MGKQA+G IA+NQ  R+D+LLYL+VYPQ+P++ TRTIEL+ YDKL AGQNATVAVMS+SG
Sbjct: 1    MGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIKYDKLPAGQNATVAVMSFSG 60

Query: 757  YDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHH 816
            YDIEDA+V+NK+S DRGFGRC V +KY+   +KY N + DRI   DR   G     +  H
Sbjct: 61   YDIEDALVLNKASCDRGFGRCQVFRKYSTQLKKYPNRSQDRI--ADRV-IGENGKPIAKH 117

Query: 817  SNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGP 876
                  IL  DG+A  GE I   +VY+NKESP     + M      +   + A   YK  
Sbjct: 118  R-----ILGTDGIALVGERINAGEVYLNKESPSNPNSTGMGNDFNLND-MKPAPMGYKLH 171

Query: 877  DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 936
            D     +D+V L   +N    +K   R TRRPELGDKFSSRHGQKGV G IV QED PF+
Sbjct: 172  D--HAYIDKVMLSQTENESGVLKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFA 229

Query: 937  ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISE 996
            + G+ PD+IMNPHGFPSRMTVGKM+ELL GKAGV  G   YG+ FG        V+ + +
Sbjct: 230  DSGVTPDIIMNPHGFPSRMTVGKMLELLSGKAGVINGSLEYGTCFG-----GSNVDVMGQ 284

Query: 997  TLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056
             L+ +GFSY+GKD + SGITG  L AY+F GPIYYQKLKHMV DKMH+R  GPR +LTRQ
Sbjct: 285  ILIDNGFSYSGKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQ 344

Query: 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLK 1116
            PTEGR+R+GGLR+GEMERDCLIAYGAS L+ ERLM+SSD  +V +C  CGL+GY      
Sbjct: 345  PTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHQVDICETCGLMGY------ 398

Query: 1117 AGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158
            +G C TCK+   +S+M +PYA KLL+QE+ SMN++ RLKL +
Sbjct: 399  SGWCQTCKSSKGVSTMTMPYAAKLLVQEMLSMNVLVRLKLED 440


>gi|312136876|ref|YP_004004213.1| DNA-directed RNA polymerase, subunit b' [Methanothermus fervidus DSM
            2088]
 gi|311224595|gb|ADP77451.1| DNA-directed RNA polymerase, subunit B' [Methanothermus fervidus DSM
            2088]
          Length = 604

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/612 (43%), Positives = 376/612 (61%), Gaps = 15/612 (2%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            +  NG ++G  + P+ F + +RK RR GKI   V++  + +   V I +D GRV RPL++
Sbjct: 6    IYLNGELVGTCKDPEKFVEEIRKKRREGKISHEVNIAYHPENNEVLIFTDPGRVRRPLIV 65

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G  ++ + H+++L +G  +++D ++EG+IEYLD  EE NA IA+ E + T + TH+E
Sbjct: 66   VENGKPKLTKEHIEKLRNGEITWNDLIKEGVIEYLDAEEEENAYIAISEDELTEEHTHLE 125

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P  + GV AGLIPY +HN SPRNT + AM KQA+G  A N   R D+  +LL YPQ P
Sbjct: 126  IDPAVMFGVSAGLIPYANHNSSPRNTMEAAMAKQALGIYASNYKYRTDTRSHLLFYPQIP 185

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L+ TR +++  YDK+ AGQN  VAV+SY GY++EDA+++NKS+++RG  R    + Y + 
Sbjct: 186  LVRTRIMDINEYDKMPAGQNFVVAVLSYEGYNMEDALIINKSAVERGLARSFFFRTYESS 245

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             ++Y     D+   P +   G        H       LD+DG+  PG  +   DV I K 
Sbjct: 246  ERRYPGGQEDKFEIPKKGIRGYRSEDSYRH-------LDEDGIINPGTEVSQGDVLIGKT 298

Query: 847  SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
            SP    G I    G    R R +  T +   GE  VVD V L     G+  +K  +R  R
Sbjct: 299  SPPRFLGEI-DEFGTVSDRRRESSVTVR--PGEKGVVDTVILTESSEGNKLVKVKVRDGR 355

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             PELGDKF+SRHGQKGV G IV +ED PF+E G+ PDLI+NPH  PSRM+VG+M+E+L G
Sbjct: 356  VPELGDKFASRHGQKGVIGLIVPEEDMPFTEDGLVPDLIINPHAIPSRMSVGQMLEMLLG 415

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K     GR   G+ F       +  E I   L K+GF   G + +Y+G+TG  ++A IF+
Sbjct: 416  KGACFEGRRIDGTPFT-----GEKEEEIKHVLKKYGFESEGLEAMYNGMTGEKIEAEIFV 470

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            G +YYQKL HM  DK++AR  GP  +LTRQPTEGRAR GGLR GEMERDCLIA+GA++ +
Sbjct: 471  GVVYYQKLHHMTADKVYARSRGPVQILTRQPTEGRAREGGLRFGEMERDCLIAHGAALTL 530

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQ 1146
             ERL+  SD +E  VC  CG+L  Y+       C  C +  +I  +++ YA KLL+ EL+
Sbjct: 531  KERLLDESDKYEALVCDKCGMLAVYDKIHDKTYCPLCGDKSDIYPVEMSYAFKLLLDELR 590

Query: 1147 SMNIVPRLKLAE 1158
            S+ I PRL+L +
Sbjct: 591  SLCIFPRLRLED 602


>gi|83415479|gb|ABC17947.1| RNA polymerase II second largest subunit, partial [Zancudomyces
            culisetae]
          Length = 718

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 289/739 (39%), Positives = 420/739 (56%), Gaps = 60/739 (8%)

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLER 425
            KRL+L+G L+++LF +LFK M  ++ +     L K   S R F+LS  +  ++IT GL+ 
Sbjct: 2    KRLDLAGPLLAMLFRNLFKKMTRDMTR----YLQKCIESRREFNLSMALKSNTITAGLKY 57

Query: 426  TLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            +L+TGN+ D K+    R G+ QVL R +F  TL H+ R +    +  K++ PR L  + W
Sbjct: 58   SLATGNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHW 117

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            G++CP +TPEG+ACGLVKNLALM H+T   + G ++       +E+LE L G+ L +   
Sbjct: 118  GLVCPAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEEWAMENLEELVGDSLADSTK 177

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
              V  NG+ +G H+     A  +++LRR  +    +S+  + ++R + I +D GRVCRPL
Sbjct: 178  IFV--NGVWVGIHKEAVRLAATLKQLRRRLEFSYELSIVHDVREREIRILTDAGRVCRPL 235

Query: 605  VIADKG--------ISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIAL--- 653
             + +          ++ I+   + E  D VR + D L EG++EYLD  EE  A+I +   
Sbjct: 236  FVVNHMRLALTKPVVAAIEARRLGER-DAVR-WHDLLSEGIVEYLDAEEEETAMIVMSPH 293

Query: 654  ---------YEGDATPD---------------TTHIEIEPFTILGVIAGLIPYPHHNQSP 689
                     + G   P                 TH EI P  ILG+ A ++P+P HNQSP
Sbjct: 294  ELDESRRFVHTGQLPPKDDGRIRSRRNIGITTWTHCEIHPSMILGICASIVPFPDHNQSP 353

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG +  N   RMD+L  LL YPQ+PL TT  +E + + +L AGQNA V
Sbjct: 354  RNTYQSAMGKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAIV 413

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            A++ Y+GY+ ED+++MN+SS+DRG  R I  + Y     K    T  R  +P R      
Sbjct: 414  AILCYTGYNQEDSLIMNQSSIDRGLFRSIFFRSYMDEEDKLGMRTMGRFEKPSRA--STL 471

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
            R+++  +       LDDDGL APG  +  +D+ I K +P+      +   GQ    +   
Sbjct: 472  RLKIGTYEK-----LDDDGLIAPGTRVTGDDIIIGKTTPIPIASLEL---GQRTLAHTKL 523

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
              +      E+ +VD+V L ++ +G   +K  +R TR P++GDKF+SRHGQKG  G +  
Sbjct: 524  DASKPLRATESGIVDQVLLXTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGTIGIVYT 583

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
             ED PF+  GI PDLI+NPH  PSRMT+G +IE L  K     G     S F +      
Sbjct: 584  SEDMPFTADGIVPDLIINPHAIPSRMTIGHLIECLLSKLATLVGTAADASPFTDV----- 638

Query: 990  TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049
            TV++IS  L   G+   G +++Y+G +G  L + +F GP YYQ+LKHMV DK+H+R  GP
Sbjct: 639  TVDAISAELFSLGYHSRGLEVMYNGHSGRKLYSQVFFGPTYYQRLKHMVDDKIHSRARGP 698

Query: 1050 RVMLTRQPTEGRARNGGLR 1068
              +LTRQP EGR+R+GGLR
Sbjct: 699  LQILTRQPVEGRSRDGGLR 717


>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 867

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 310/894 (34%), Positives = 482/894 (53%), Gaps = 69/894 (7%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDK-------KGNINASVTSSTETVKSKTVIQMEKGKMYLL 234
            +EKV++ QE+ + N V + +         +  I +      +T+ S  V       +   
Sbjct: 1    SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKMSRDQNITAS 60

Query: 235  LNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKA 291
            L    + IPIMV+ +A+G+ +D+++++ +     D +   +L PSI+      I  +E A
Sbjct: 61   LPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNA--FTIQEREIA 118

Query: 292  LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
            L+++ GK  R+  G   + R   A  +L    L ++ +       K +++  M+ R++ A
Sbjct: 119  LDFI-GKRGRN-IGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYMVHRLLLA 176

Query: 352  MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLS 411
             L +  +DD+D+ G KRL+L+G L++ LF   F+ +  +V +   + +    R   F+L+
Sbjct: 177  ALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIE---RGREFNLN 233

Query: 412  QFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKS 470
              I  ++IT GL   L+TGN+ D K+F   R G++QVL R +F  TL H+ R++    + 
Sbjct: 234  MAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTPIGRE 293

Query: 471  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVED 530
             K++ PR L  + WGM+CP +TPEG+ACGLVKNLALM +++     GP++        E+
Sbjct: 294  GKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEWTTEN 353

Query: 531  LELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRC 590
            LE ++   + +     V  NG  +G HR+P      +  LRR+G I   VSV  + +   
Sbjct: 354  LEEITASAIGSNTKVFV--NGSWVGIHRQPDSLVQTLISLRRSGDIMPEVSVVRDVRDNE 411

Query: 591  VYIASDGGRVCRPLVIADKGISRI-KEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNA 649
            + I +D GR+CRPL I ++    + +  H+  L  G   ++D L  G++EYLD  EE   
Sbjct: 412  LRIYTDAGRICRPLFIVNEQQQLVLRRDHVARLEVGEWGWEDLLANGIVEYLDTEEEETT 471

Query: 650  LI-------ALYEGDATPD---------------------TTHIEIEPFTILGVIAGLIP 681
            +I       A   GD  PD                      +H EI P  ILG+ A +IP
Sbjct: 472  MICMTPDDLAESRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGICASIIP 531

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N   RMD+L  +L YPQ+PL+ TR+++ + + +L
Sbjct: 532  FPDHNQSPRNTYQSAMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATRSMKYLRFREL 591

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA+  YSGY+ ED+I+MN+SS+DRG  R I  + Y    +K   S  +   +P
Sbjct: 592  PAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYMDQEKKSGFSDVETFEKP 651

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM-SPTG 860
             R       +++ H S      +++DGL APG  +  +D+ I K +PL    S M + T 
Sbjct: 652  TR----ETTLKLRHGS---YDKIEEDGLVAPGTRVTGDDIIIGKTAPLPPDTSEMGARTT 704

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            QT     ++ ++      E  +VD V L ++ +G   +K  +R TR P++GDKF+SRHGQ
Sbjct: 705  QTKKDVSTSLKS-----TEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQ 759

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PFS  G+ PDLI+NPH  PSRMT+G ++E L  K G   G       
Sbjct: 760  KGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSKVGSLTG------T 813

Query: 981  FGEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQK 1033
             G+ +   D TV+ I++ L   G+   G +++Y+G TG  L A +F GP YYQ+
Sbjct: 814  EGDATPFTDITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTYYQR 867


>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella allomycis]
          Length = 697

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 291/717 (40%), Positives = 420/717 (58%), Gaps = 37/717 (5%)

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLER 425
            KR++L+G L++ LF  LF+ +  +V K     L K   S+R F+L+  +  ++IT GL  
Sbjct: 2    KRMDLAGPLLAGLFRMLFRKLTKDVGK----YLQKCIDSNRDFNLTLAVKSNTITNGLRY 57

Query: 426  TLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            +++TGN+ D K+    R G++QVL R ++  TL H+ RV+    +  K++ PR L  S W
Sbjct: 58   SIATGNWGDQKKAMESRAGVSQVLNRYTYASTLSHLRRVNTPIGRDGKLAKPRQLHNSHW 117

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
            GM+CP +TPEG+ACGLVKNL+LM++++      P+I       +E L  +S   + N   
Sbjct: 118  GMVCPAETPEGQACGLVKNLSLMSYISVGTSPAPIIDALKIYQMEYLAEISPSSIGNLTK 177

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
              +  NG  +G H  PK   + ++K RR   I    SV  + +++ V I +D GR CRPL
Sbjct: 178  --IFMNGNWIGVHSDPKRLVNDLKKFRRECAISFETSVVFDVREKEVRILTDAGRCCRPL 235

Query: 605  VIADKGISRIKEHHMKEL----LDGVRSFDDFLREGLIEYLDVNEENNALIA-----LYE 655
             + +    ++KE  + +L    + G   + + L  G++EYLDV EE  ++I      L E
Sbjct: 236  FVVENQTIQLKEDQLSQLQQRDITGF-GWQNLLENGVVEYLDVEEEETSMICMTPEDLLE 294

Query: 656  GDATPD----TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
                 D     TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQAMG  + N   
Sbjct: 295  AKNITDFPTKYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGINSTNFQR 354

Query: 712  RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
            RMD+L  +L YPQ+PL+TTR++E + + +L AGQNA VA+  YSGY+ ED+++MN+S++D
Sbjct: 355  RMDTLNNILFYPQKPLVTTRSMEYLHFRELPAGQNAIVAIACYSGYNQEDSVIMNQSAID 414

Query: 772  RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAA 831
            RG  R I  K YT   +K      +  ++P  T     RM+   +       L+DDGL A
Sbjct: 415  RGLFRSICYKTYTDEEKKVGTLQVEEFMKPTFT--TTVRMRHGTYDK-----LEDDGLVA 467

Query: 832  PGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891
            PG  I   D+ I K  P+      +     T +R R A    K    E  ++D+V + ++
Sbjct: 468  PGIKISGEDIIIGKTVPIPDDSDELGQRTSTHTR-RDASTPLKS--NEHGIIDQVMISTN 524

Query: 892  KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 951
             +G   +K  +   R P++GDKF+SRHGQKG  G   +QED PF+  GI PD+I+NPH  
Sbjct: 525  ADGYRFVKIRVSSVRVPQMGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAI 584

Query: 952  PSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMI 1011
            PSRMT+G ++E L GK     G     + F +      TVESISETL+K G+   G +++
Sbjct: 585  PSRMTIGHLVECLLGKVSAITGDEGDATPFTDV-----TVESISETLLKCGYQSRGFEVL 639

Query: 1012 YSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            Y+G +G  L A IF+GP YYQ+LKHMV DK+HAR  GP  +LTRQP EGR+R+GGLR
Sbjct: 640  YNGHSGRKLNAQIFIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLR 696


>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
          Length = 878

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 301/842 (35%), Positives = 463/842 (54%), Gaps = 67/842 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
            IPI VV +A+G+ SD+++++ +    +D +   +L P I++     I  +E AL+++  +
Sbjct: 63   IPIWVVFRALGVISDRDILEHICYDLQDSQMLEMLKPCIDD--GFVIQDREVALDFIGNR 120

Query: 299  VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
               +T G     R   A  IL+   L +V +   +   K  +   M+ R++ A L +  +
Sbjct: 121  --GTTTGLSRERRIRYAQEILQKEMLPHVAMKEGSEYQKAHFFGYMIHRLLLAALERREL 178

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD+D+ G KRL+L+G L+S LF  LF+ +  +V + +   +        F+L+  +   +
Sbjct: 179  DDRDHFGKKRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVET---HKEFNLALAVKHQT 235

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 236  ITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 295

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNLALM  ++      P I      G+E LE    E
Sbjct: 296  QLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSIAAPGIEFLEEWGLESLE----E 351

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+P     IF NG+ +G HR P      ++KLRR   I   +S+  + +++ + + SD
Sbjct: 352  HSHSPAPSTKIFVNGVWIGVHRDPANLVKTLKKLRRKDDISPEISIVRDIREKELRVYSD 411

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVR------SFDDFLREGLIEYLDVNEENNAL 650
             GRVCRPL I +     +++ H++ L +G+        +D  ++ G+IE LD  EE   +
Sbjct: 412  AGRVCRPLFIVENQRLILQKRHVRWLNNGINDEGEEFKWDRLIKGGIIELLDAEEEETVM 471

Query: 651  IALY-------------------EGDATPDT-----------THIEIEPFTILGVIAGLI 680
            I++                    EG+  P             TH EI P  ILG+ A +I
Sbjct: 472  ISMTPEDLENSRLQRPGVDPQANEGEFDPAARLKAGTHAHTLTHCEIHPSMILGICASII 531

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +
Sbjct: 532  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRE 591

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +
Sbjct: 592  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGIQQLEEFEK 651

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R     E    + H       L+DDGL APG  +   D+ I K +P+      +    
Sbjct: 652  PTR-----ENTLRLKHGTYDK--LEDDGLIAPGTGVAGEDIIIGKTAPIPPDSEELGQRT 704

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            +T +R R      K    E+ +VD+V + ++  G   +K  +R +R P++GDKF+SRHGQ
Sbjct: 705  RTHTR-RDVSTPLKST--ESGIVDQVLITTNSEGQKFVKVRVRSSRIPQIGDKFASRHGQ 761

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + 
Sbjct: 762  KGTVGITYRQEDMPFTAEGIVPDVIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATP 821

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            F +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV D
Sbjct: 822  FTDL-----TVESVSIFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDD 876

Query: 1041 KM 1042
            K+
Sbjct: 877  KI 878


>gi|20090128|ref|NP_616203.1| DNA-directed RNA polymerase subunit B' [Methanosarcina acetivorans
            C2A]
 gi|19915108|gb|AAM04683.1| DNA-directed RNA polymerase, subunit B [Methanosarcina acetivorans
            C2A]
          Length = 604

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/616 (44%), Positives = 368/616 (59%), Gaps = 21/616 (3%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++G H  P   A+ +RK+RR G I + V++ +N+  R V I SD GR  RPLV+
Sbjct: 6    VFINGELVGTHDNPAELAEELRKMRRQGFISKQVNIALNDNTREVIINSDMGRARRPLVV 65

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G+ R  E H+++L     +FDD ++EG +EYLD  EE NA IALYE D T   TH+E
Sbjct: 66   VENGVLRATEEHVQKLKSKEITFDDLVKEGCVEYLDAEEEENAYIALYESDITSRHTHME 125

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P  +LG+  G++PYP HN SPRNT   AM KQ +G    NQ  R D+  ++L YPQR 
Sbjct: 126  IDPELMLGICTGMVPYPEHNASPRNTMGAAMIKQCIGVSTANQKLRPDTRAHVLHYPQRA 185

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            L  TRT E +G+D   AGQN  VA++SY GY+IEDA++ NK S++RG GR   ++ +   
Sbjct: 186  LTRTRTSEAIGFDDRPAGQNFVVAILSYEGYNIEDALIFNKGSIERGLGRSHFLRTFEGE 245

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             ++Y     D+   PD    GA   +   ++N     LD DGL  P   + PNDV I K 
Sbjct: 246  ERRYPGGQEDKFEIPDSEYRGARSAEA--YAN-----LDVDGLVNPETPVGPNDVLIGKT 298

Query: 847  SP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
            SP   LE      S  G    + R +  T +    ET +VD V L    NG    K  +R
Sbjct: 299  SPPRFLEE----PSDFGIAVEQRRESSVTMRS--NETGIVDTVILTESINGTRLAKVKVR 352

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              R P++GDKF+SRHGQKGV G  V   D PF+E G+ PDL++NPH  PSRMTVG ++E+
Sbjct: 353  DERIPDIGDKFASRHGQKGVIGLKVPIADMPFTESGLTPDLMINPHAIPSRMTVGHVLEM 412

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            +GGK G   GR    +AF       +  + + E L KHGF++ GK++ Y G TG  + A 
Sbjct: 413  IGGKVGSMEGRRVNATAFS-----GENEDDLREALKKHGFAHTGKEIFYDGATGRMIPAD 467

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            +F+G I YQKL HMV  KMHAR  GP  +LTRQPTEGRAR GGLR GEMERD L+ +GA+
Sbjct: 468  VFVGVILYQKLHHMVTSKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLVGHGAA 527

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQ 1143
            M + ERL+  SD     VC  CG++  Y+ +     CS C    +I  +++ YA KLL+ 
Sbjct: 528  MSLKERLLDESDKVVELVCSHCGMIATYDKQRNVAFCSACGADTDIYPVEMSYAFKLLLD 587

Query: 1144 ELQSMNIVPRLKLAEA 1159
            E++S+ + PRL L +A
Sbjct: 588  EIKSLGVAPRLNLEDA 603


>gi|300394768|gb|ADK11922.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
            mollusca]
          Length = 875

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 301/838 (35%), Positives = 459/838 (54%), Gaps = 66/838 (7%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAN--LDIYTQEKALEYLEGKV 299
            IPI VV +A+G+ SD+++++ +  D +  A +L  ++ C +    I  +E AL+++  + 
Sbjct: 63   IPIWVVFRALGVISDRDILEHICYDMQ-DAQMLEMLKPCIDDGFVIQDREVALDFIGNR- 120

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +D
Sbjct: 121  -GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELD 179

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LFK +  +V + +   +        F+LS  +   +I
Sbjct: 180  DRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVET---HKEFNLSLAVKHQTI 236

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 237  TNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 296

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I      G+E LE    E 
Sbjct: 297  LHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLE----EN 352

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D 
Sbjct: 353  AHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDA 412

Query: 598  GRVCRPLVIADKGISRIKEHHMKELLDGVRS-------FDDFLREGLIEYLDVNEENNAL 650
            GRVCRPL I +     +++ H+K L  G R        ++  ++ G+IE LD  EE   +
Sbjct: 413  GRVCRPLFIVENQQLALQKKHVKWLNQGFRDDDGEEYKWEQLVKGGIIELLDAEEEETVM 472

Query: 651  IAL-----------------YEGDATPD-------------TTHIEIEPFTILGVIAGLI 680
            I++                 +  DA  D              TH EI P  ILGV A +I
Sbjct: 473  ISMTPEDLENSRMQSAGIDPHSNDADYDPAARLKAGINAHTWTHCEIHPSMILGVCASII 532

Query: 681  PYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDK 740
            P+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +
Sbjct: 533  PFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRE 592

Query: 741  LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR 800
            L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R I  + Y  + +K      +   +
Sbjct: 593  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEK 652

Query: 801  PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 860
            P R      RM+   +       ++DDGL APG  +   D+ I K +P+      +    
Sbjct: 653  PTRD--TTLRMKHGTYDK-----IEDDGLIAPGTGVSGEDIIIGKTAPIPPDSEELGQRT 705

Query: 861  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 920
            +T +R R      K    E  +VD+V + ++  G   +K  +R TR P++GDKF+SRHGQ
Sbjct: 706  RTHTR-RDVSTPLKST--ENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQ 762

Query: 921  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 980
            KG  G   +QED PF+  GI PD I+NPH  P RMT+G ++E L  K     G     + 
Sbjct: 763  KGTIGITYRQEDMPFTAEGIVPDXIINPHAIPXRMTIGHLVECLLSKVATLIGNEGDATP 822

Query: 981  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMV 1038
            F +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV
Sbjct: 823  FTDL-----TVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMV 875


>gi|330038752|ref|XP_003239690.1| second-largest subunit of RNA polymerase III [Cryptomonas
           paramecium]
 gi|327206614|gb|AEA38792.1| second-largest subunit of RNA polymerase III [Cryptomonas
           paramecium]
          Length = 1087

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/766 (34%), Positives = 457/766 (59%), Gaps = 28/766 (3%)

Query: 32  FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPS 91
           F  +    + + ++ Q ++SFN+F+N G++K +     I +  + ++   F ++++G  +
Sbjct: 8   FNFINYHFRSQSIIWQQIESFNFFLNVGLKKTLYKFKCINNLQENNLSYNFSNLKLGSTT 67

Query: 92  MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 151
              +     + P+ CR+ D++Y APILV++ Y      +K    + ++ +  +PIM+RS 
Sbjct: 68  SCNESTEYTVTPNECRIRDISYMAPILVDVCYF----FKKKFFSRMNLTLCILPIMIRST 123

Query: 152 RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 211
            C+ + K E    +  ECPLD GGYFIIKG E+V+ I+E+L+ N++ I+ D+ GN+ A V
Sbjct: 124 GCIFFNKSENFFVKFKECPLDGGGYFIIKGIERVVSIRERLTFNKINIEKDQDGNLCACV 183

Query: 212 TSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSA 271
            S     + K  I ++  K Y   N F++ I ++++ KA+ +  +++ + +VG   ++  
Sbjct: 184 ISCLAERRVKNSIILKNKKFYFRSNIFLEDILVLILYKAINITDEKDFIGLVGF--QFEN 241

Query: 272 LLLPSIEECANLDIYTQEKALEYLEGKV--KRSTFGSPPNDREGRAFSILR----DVFLA 325
           +L  +++E   + I+TQ++AL Y+  ++  K   +        G  +  ++    +VF  
Sbjct: 242 ILNFTVDEMKIMGIFTQKQALLYIYQRLDLKVWKYKQFFKKNAGNTYEFIKKIVFNVFSK 301

Query: 326 NVPVH-------NNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSL 378
            + +H        +NF  K  ++++M+++++ ++     +D+KDY GNKR ELSGQ++  
Sbjct: 302 YILIHVISQKKTRDNFYGKIMFISIMIKKILASIDQTICIDNKDYYGNKRFELSGQIMIK 361

Query: 379 LFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFK 438
           LFE++FK  + +++K    +  K       D+  F   + I+   E +LS+GN+ + +F 
Sbjct: 362 LFENVFKRSVFQMEKKYFSLSKKIKGRIECDVFSFFHSNFISSSFEYSLSSGNWILSKFS 421

Query: 439 MHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498
             ++GMTQ+L+RLSFI ++  + +++  + KS K+   R+L PSQWG++CP DTPEGE+C
Sbjct: 422 QEKQGMTQILSRLSFISSISSVNKINSTYNKSTKILTLRSLYPSQWGVVCPSDTPEGESC 481

Query: 499 GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHR 558
           G++KNL+++T+++ DE+   + +LC+ LGVE    LS  ++      +V  N   +G H 
Sbjct: 482 GIIKNLSILTYISLDEKNKYIKNLCFDLGVE---FLSFSKVKTVPMDMVFLNNNYIGLHA 538

Query: 559 RPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA--DKGISRIKE 616
               F  V RK+RR   I +  S+F +   R V+I +D GR CRP  I   ++ I + K+
Sbjct: 539 NTPRFLFVFRKMRRDTIISQNTSIFWDTVNRFVFIWTDRGRACRPFFIIKLNESIDKFKK 598

Query: 617 HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676
            +  ++     S+ +  RE  +E+LD  E+NNALIA         TTH+EI P  ILG+ 
Sbjct: 599 RNTAKIF----SWKNLQRENFVEFLDTYEQNNALIANESKKINSKTTHLEISPEIILGIC 654

Query: 677 AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736
           A  IP+P+HNQSPRNTYQCAMGKQ++G I  NQ+ R D++L LLVYPQ+P++ T+  EL 
Sbjct: 655 ANNIPFPNHNQSPRNTYQCAMGKQSIGFIGLNQIYRADTILSLLVYPQKPIVGTKITELS 714

Query: 737 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
           G ++L  G NA + VMSY G+DIEDA+ +N+SS+ RGF + +++KK
Sbjct: 715 GNNRLTGGINACICVMSYRGHDIEDAMTLNRSSIQRGFMKSVLLKK 760



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 180/269 (66%), Gaps = 16/269 (5%)

Query: 887  ALCSDKNGDLC-IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLI 945
            ++ +  N D   +KF+ R TR PE+GDKFSSRHGQKGVCG +   EDFPFS  G  PD+I
Sbjct: 822  SILTHNNHDFVFVKFVFRETRTPEVGDKFSSRHGQKGVCGIVNFYEDFPFSNEGSVPDII 881

Query: 946  MNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSY 1005
            MNPHGFPSRMT+GK++ELLG K     G+F  G+ F + +          + ++K G++ 
Sbjct: 882  MNPHGFPSRMTIGKIVELLGSKLSCLSGKFFEGTPFKKFNRIV-----FEKKILKLGYNK 936

Query: 1006 NGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065
            N KD+ +SG +G PL A++F GP++YQKLKHMV DK+++R  G +  LTRQP EGR + G
Sbjct: 937  NCKDIFFSGTSGQPLYAFVFSGPVFYQKLKHMVADKIYSRSRGIKSKLTRQPVEGRNKGG 996

Query: 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKN 1125
            GLR GEMERDCL++YGAS L  ERLM+SSD +          LG ++ K       T  N
Sbjct: 997  GLRFGEMERDCLVSYGASELTLERLMISSDIY----------LGSFDTKTGTITHVTNSN 1046

Query: 1126 GDNISSMKLPYACKLLIQELQSMNIVPRL 1154
              +I+ +K PYACKLL QEL SMNI+PR+
Sbjct: 1047 KHSITLIKFPYACKLLFQELYSMNIIPRI 1075


>gi|6606099|gb|AAF19062.1|AF107790_1 DNA-dependent RNA polymerase II RPB140 [Podospora anserina]
          Length = 934

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 321/956 (33%), Positives = 500/956 (52%), Gaps = 92/956 (9%)

Query: 182  TEKVLLIQEQLSKNRVIIDTDKKG---NINASVTSSTE---------TVKSKTVIQMEKG 229
            +EKVL+ QE+ + N V +     G   +  A + S+ E          +K  T    EKG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASNEKG 60

Query: 230  KMY----LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALL---LPSIEECAN 282
            ++     + L    + + + +V +A+G+ SD++++  +  D + + +L    P IEE   
Sbjct: 61   RLANTVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEA-- 118

Query: 283  LDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVA 342
              I  +E AL+++ GK      G    +R   A  +L+   L ++         K F++ 
Sbjct: 119  FCIQDREIALDFI-GKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLG 177

Query: 343  VMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP 402
             M+ ++++  L +   DD+D+ G KRL+L+G L++ LF  + + M  ++   +   L   
Sbjct: 178  YMVNKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDT- 236

Query: 403  SRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
              +  F L+  I  +++T  L+ +L+TGN+ D K+      G++QVL R +F  TL H+ 
Sbjct: 237  --NKHFTLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLR 294

Query: 462  RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLIS 521
            R +    +  K++ PR L  + WG++CP +TPEG+ACGLVKNL+LM +V+      P++ 
Sbjct: 295  RTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVD 354

Query: 522  LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVS 581
                 G++ LE    E L  PN+  V  NG  +G H  PK    +++ LRR   I   VS
Sbjct: 355  FMTARGMDVLE--EYEPLRAPNATKVFVNGTWVGVHNDPKQLVTLVQDLRRKNVISFEVS 412

Query: 582  VFVNEKQRCVYIASDGGRVCRPLVIAD----------KGISRIKEHHMKELLDG------ 625
            +  + ++R   I SD GRV RPL   +          KG   + + H+  L         
Sbjct: 413  LVRDIREREFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNKDHIARLQRDKELGKY 472

Query: 626  ---VRSFDDFLREGLIEYLDVNEENNALIALYEGD------------------------- 657
                  +   L+ G IEYLD  EE   +I +   D                         
Sbjct: 473  HPDYWGWQGLLKSGAIEYLDAEEEETTMICMTPQDLDDFRMTKLGFHIETTSGQGNNRIR 532

Query: 658  -----ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCR 712
                  T   TH EI P  +LG+ A +IP+P HNQSPRNTYQ AMGKQAMG    N   R
Sbjct: 533  TKVNKTTHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRR 592

Query: 713  MDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 772
            MD++  +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED++VMN+SS+DR
Sbjct: 593  MDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDR 652

Query: 773  GFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAP 832
            G  R +  + YT   ++   +  +   +P R     + +++ H +      LD DG+ AP
Sbjct: 653  GIFRSLFFRSYTDCEKRVGINIVEMFEKPTR----GDTLRLKHGT---YDKLDADGIIAP 705

Query: 833  GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 892
            G  +   D+ I K SP+    + +   GQ   ++     +      E+ +VD V L +++
Sbjct: 706  GIRVSGEDIIIGKTSPINPDNAEL---GQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQ 762

Query: 893  NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 952
            +G   +K  +R T+ P++GDKF+SRHGQKG  G   + ED PF+  GI PD+I+NPH  P
Sbjct: 763  DGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIP 822

Query: 953  SRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIY 1012
            SRMT+  ++E L  K     G     + F +      TV+S+S+ L + G+   G +++Y
Sbjct: 823  SRMTIAHLVECLLSKVATLKGLEGDATPFTDV-----TVDSVSDLLREQGYQSRGFEILY 877

Query: 1013 SGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLR 1068
             G TG  L+A  F GP YYQ+L+HMV DK+HAR  GP  ++TRQP EGRAR+GGLR
Sbjct: 878  HGHTGRKLRAQCFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLR 933


>gi|333911407|ref|YP_004485140.1| DNA-directed RNA polymerase subunit B [Methanotorris igneus Kol 5]
 gi|333751996|gb|AEF97075.1| DNA-directed RNA polymerase subunit B [Methanotorris igneus Kol 5]
          Length = 613

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/621 (43%), Positives = 387/621 (62%), Gaps = 27/621 (4%)

Query: 547  VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
            V  NG ++G   +P+     +R+ RR G++  F S+  NE+   ++I++DGGR  RPL++
Sbjct: 8    VYVNGKLMGTTDKPEELVKFLREKRRNGELSPFTSIAYNEESGDIHISTDGGRAVRPLIV 67

Query: 607  ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
             + G  ++ + H+++L  G  +F D ++EG+IEYLD  EE NA IA+YE + T + TH+E
Sbjct: 68   VENGKPKLTQEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAYIAVYEDELTEEHTHLE 127

Query: 667  IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
            I+P +ILGV AG+ PYP HN +PR T   AMGKQ++G    N   R+D+  ++L YPQ P
Sbjct: 128  IDPLSILGVGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNFRWRLDTRGHILHYPQIP 187

Query: 727  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
            ++ T+  E++G+DK  AGQN  VA+MSY GY++EDA +++K+++DRG GR    + Y + 
Sbjct: 188  IVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAFIISKAAIDRGLGRSTFFRTYDSY 247

Query: 787  NQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
             ++Y     DR   P++ G    R +  + +      L +DGL  P   +K  DV I K 
Sbjct: 248  EKRYPGGQVDRFEIPEK-GVRGYRAEEAYRN------LGEDGLVEPECEVKSGDVIIGKT 300

Query: 847  SP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
            SP   LE     +    QT S+ R    T +   GE  +VD V L   K G+  +K  +R
Sbjct: 301  SPPRFLEEHEISL----QTKSQRRDTSVTVR--HGEEGIVDCVILTETKEGNRLVKVRVR 354

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              R PELGDKF+SRHGQKGV G IV QED PF+E GI PDLI+NPH  PSRMTVG+++E+
Sbjct: 355  DLRIPELGDKFASRHGQKGVIGLIVPQEDMPFTESGIVPDLIINPHAIPSRMTVGQVLEM 414

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            +GGK G    R   G+ F   SG  +    + +TL K+GF ++GK+++Y G TG   +  
Sbjct: 415  IGGKVGALECRRVDGTIF---SGEKEW--DLRKTLEKYGFKHHGKEVMYDGKTGKKFEVE 469

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            IF+G +YYQKL H+V  K+HAR  GP  +LTRQPTEGRAR GGLR GEMERD L+ +GA+
Sbjct: 470  IFIGVVYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLVGHGAA 529

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC------KNGDNISSMKLPYA 1137
            ML+ ERL+  SDP +  +C  CG +  ++H+     C  C       +   I S+++PYA
Sbjct: 530  MLLKERLLDESDPDDEYICVNCGEIAIFDHRRGIKYCPICGETEELHDNRKIPSVRIPYA 589

Query: 1138 CKLLIQELQSMNIVPRLKLAE 1158
             KLL+ EL+SM I P+LK+ +
Sbjct: 590  FKLLLDELKSMCIYPKLKIKD 610


>gi|83415485|gb|ABC17950.1| RNA polymerase II second largest subunit, partial [Rhopalomyces
            elegans]
          Length = 723

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 293/748 (39%), Positives = 432/748 (57%), Gaps = 73/748 (9%)

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            KRL+L+G L++ LF  LF+ +  +V K +  ++ +   +  F+L+  +   ++T GL+ +
Sbjct: 2    KRLDLAGPLIAGLFRMLFRKLTKDVGKYLQRVIDE---NRDFNLTLAVKSTTLTNGLKYS 58

Query: 427  LSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
            L+TGN+ D K+    R G++QVL R +F  TL H+ R +    +  K++ PR L  + WG
Sbjct: 59   LATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWG 118

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH---NP 542
            M+CP +TPEG+ACGLVKNLALMTH++      P+I       +E+  +++ +E++     
Sbjct: 119  MVCPAETPEGQACGLVKNLALMTHISVGAPSRPVIEF-----LEEWAMVNLDEMYKTGTA 173

Query: 543  NSFLVIFNGLILGKHRRPKCFADVMRKLRR----AGKIGEFVSVFVNEKQRCVYIASDGG 598
            ++  V  NG+ +G H  P     V R  RR    A ++ + VS   + ++R +++ SD G
Sbjct: 174  DATKVFVNGVWVGVHNEPTQLVSVFRNFRRHETAATRVFQEVSCVSDIRERELWMFSDAG 233

Query: 599  RVCRPLVIADKGISRIKEHHMKELLDG------VRSFDDFLREGLIEYLDVNEENNALIA 652
            R CRPL + ++   +I +  ++ L +       V  ++  + EG+IE++D  EE  A+I 
Sbjct: 234  RCCRPLYVVEQNRLKITKQQVRVLDERDEEGKRVSGWNRLISEGVIEFIDTEEEETAMIC 293

Query: 653  L-----------YE-GDATPDT----------------THIEIEPFTILGVIAGLIPYPH 684
            +           YE G   P +                TH EI P  ILG+ A +IP+P 
Sbjct: 294  MSPEDLAEAREYYETGVPRPPSRDPAARISTTIYSHTWTHCEIHPSMILGICASIIPFPD 353

Query: 685  HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
            HNQSPRNTYQ AMGKQAMG    N   RMD+L  ++ YPQ+PL+TTR +E + +  L AG
Sbjct: 354  HNQSPRNTYQSAMGKQAMGVYLTNYQLRMDTLANIIYYPQKPLVTTRAMEYLKFRDLPAG 413

Query: 745  QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT 804
            QNATVA++ YSGY+ ED+++MN+SS+DRG  R +  + Y    +K      +   +P R 
Sbjct: 414  QNATVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYMDQEKKAGVKVMEEFEKPTRD 473

Query: 805  GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDS 864
                 RM+   +       L+DDGL APG  +   D+ I K +PL    + +   GQ   
Sbjct: 474  --ATLRMKHGTYDK-----LEDDGLIAPGVRVSGEDIIIGKTAPLPEESAEL---GQ--- 520

Query: 865  RYRS-ARQTYKGP--DGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
            R RS  R+    P    ET +VD+V L +++ G   +K  +R TR P++GDKF+SRHGQK
Sbjct: 521  RTRSHTRRDISTPLRSTETGIVDQVMLTTNQEGVKFVKVRVRSTRIPQMGDKFASRHGQK 580

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PFS  GI PDLI+NPH  PSRMT+G M+E L  K     G      + 
Sbjct: 581  GTIGITYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHMVECLLSKVSTLTG------SE 634

Query: 982  GEPSGHAD-TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1040
            G+ +   D TV++IS+ L  HGF   G ++IY+G TG  L A +F+GP YYQ+LKHMV D
Sbjct: 635  GDATPFTDVTVDAISKALAVHGFHQRGFEVIYNGHTGRKLTAQVFLGPTYYQRLKHMVDD 694

Query: 1041 KMHARGSGPRVMLTRQPTEGRARNGGLR 1068
            K+H+R  GP  +LTRQP EGR+R+GGLR
Sbjct: 695  KIHSRARGPVQILTRQPVEGRSRDGGLR 722


>gi|336121473|ref|YP_004576248.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
            okinawensis IH1]
 gi|334855994|gb|AEH06470.1| DNA-directed RNA polymerase subunit B [Methanothermococcus
            okinawensis IH1]
          Length = 611

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/618 (43%), Positives = 380/618 (61%), Gaps = 27/618 (4%)

Query: 550  NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
            NG ++G    P+ F   +R+ RR G++  + S+  NE+   ++I++D GR  RPL++ + 
Sbjct: 10   NGKLIGSVDNPEEFVKYLREKRREGELSPYTSISYNEESNDIHISTDAGRAIRPLIVVEN 69

Query: 610  GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
            G  ++ + H+++L +G  +F D + EG+IEYLD  EE NA IA+YE +     TH+EI+P
Sbjct: 70   GKPKLTKEHIEKLRNGEITFSDLVNEGIIEYLDAEEEENAYIAVYEKELDEKHTHLEIDP 129

Query: 670  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
             +ILG+ AG+ PYP HN +PR T   AMGKQ++G    N   RMD+  +LL YPQ P++ 
Sbjct: 130  MSILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNLKLRMDTKGHLLHYPQVPIVR 189

Query: 730  TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
            T+  E++G+DK  AGQN  VAVMSY GY++EDA + NK+S++RG GR    + Y    ++
Sbjct: 190  TKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFIFNKASIERGLGRSSFFRSYEGFEKR 249

Query: 790  YANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESP- 848
            Y     DR   P++ G    R +  + +      L DDG+      +K  DV I K SP 
Sbjct: 250  YPGGQLDRFEVPEQ-GVRGYRAEEAYRN------LGDDGIVEVESEVKSGDVIIGKTSPP 302

Query: 849  --LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTR 906
              LE +   +    +T S+ R    T +   GE  +VD V L   K G+   K  +R  R
Sbjct: 303  RFLEEQDISL----RTKSQRRDTSVTVR--HGEGGIVDSVILSETKEGNRLAKIRVRDVR 356

Query: 907  RPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGG 966
             PELGDKF+SRHGQKGV G IV QED PF+E G+ PDLI+NPH  PSRMT+G+++E++GG
Sbjct: 357  IPELGDKFASRHGQKGVIGLIVPQEDMPFTENGVFPDLIINPHAIPSRMTIGQVLEMIGG 416

Query: 967  KAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFM 1026
            K G    R   G+ F   SG  +    + ETL K+GF ++GK+++Y G TG  L+  IF+
Sbjct: 417  KVGALECRRVDGTIF---SGEKEW--DLRETLEKYGFKHHGKEVMYDGKTGKKLECEIFV 471

Query: 1027 GPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLI 1086
            G  YYQKL H+V  K+HAR  GP  +LTRQPTEGRAR GGLR GEMERD LI +GA++L+
Sbjct: 472  GIAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAALLL 531

Query: 1087 FERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS------MKLPYACKL 1140
             ERL   SDP+E  +C  CG +  Y+HK     C  C   ++I S      + LPYA KL
Sbjct: 532  KERLFDESDPYECYICSKCGEIAIYDHKRGIKYCPVCGETEDIQSNRKIPPVNLPYAFKL 591

Query: 1141 LIQELQSMNIVPRLKLAE 1158
            L+ EL+SM I P+++L +
Sbjct: 592  LLDELRSMGINPKMELKD 609


>gi|55583688|gb|AAV53363.1| RNA polymerase II second largest subunit [Grifola frondosa]
          Length = 719

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/741 (38%), Positives = 421/741 (56%), Gaps = 59/741 (7%)

Query: 359  DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418
            DD D+ G KRL+L+G L++ LF  LF+ +  +V + +   +        F+LS  +  ++
Sbjct: 1    DDSDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET---HKEFNLSLAVKHNT 57

Query: 419  ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
            IT GL+ +L+TGN+ D K+    + G++QVL R ++  TL H+ R +    +  K++ PR
Sbjct: 58   ITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPR 117

Query: 478  ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
             L  + WGM+CP +TPEG+ACGLVKNL+LM+ ++      P+I      G+E LE    E
Sbjct: 118  QLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLE----E 173

Query: 538  ELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
              H+      +F NG+ +G HR P      ++KLRR   I   VSV  + ++R + + +D
Sbjct: 174  NAHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTD 233

Query: 597  GGRVCRPLVIADKGISRIKEHHMKELLDGVRS-----FDDFLREGLIEYLDVNEENNALI 651
             GRVCRPL I +     +++ H+++L+ G        +D+ +++G+IE LD  EE   +I
Sbjct: 234  AGRVCRPLFIVENQQLLLQKKHIEKLVKGKDDELGYKWDNLIKDGVIELLDAEEEETVMI 293

Query: 652  ALY-------------------EGDATPDT-----------THIEIEPFTILGVIAGLIP 681
             +                    EG+  P             TH EI P  ILGV A +IP
Sbjct: 294  CMTPDDLENSRLQASGVDPHANEGEFDPGARLKAPTNAHTWTHCEIHPSMILGVCASIIP 353

Query: 682  YPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKL 741
            +P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++E + + +L
Sbjct: 354  FPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLRFREL 413

Query: 742  GAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRP 801
             AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R +  + Y  + +K      +   +P
Sbjct: 414  PAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSYMDLEKKSGVQQLEEFEKP 473

Query: 802  DRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 861
             R      RM+   +       L+DDGL APG  +   D+ I K +P+      +    +
Sbjct: 474  TRD--TTLRMKHGTYDK-----LEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTR 526

Query: 862  TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 921
            T +R R      K    E+ ++D+V + ++  G   +K  +R TR P++GDKF+SRHGQK
Sbjct: 527  THTR-RDVSTPLKST--ESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQK 583

Query: 922  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 981
            G  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G     + F
Sbjct: 584  GTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPF 643

Query: 982  GEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1041
             +      TVES+S  L + G+   G +++Y G TG  LQA +++GP YYQ+LKHMV DK
Sbjct: 644  TDV-----TVESVSAVLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDK 698

Query: 1042 MHARGSGPRVMLTRQPTEGRA 1062
            +H+R  GP  +LTRQP EGR+
Sbjct: 699  IHSRARGPVQILTRQPVEGRS 719


>gi|340506559|gb|EGR32674.1| RNA polymerase ii second largest subunit, putative [Ichthyophthirius
            multifiliis]
          Length = 936

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 324/919 (35%), Positives = 490/919 (53%), Gaps = 78/919 (8%)

Query: 288  QEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRR 347
            QE AL+Y+  ++K S       +    A  +L    L +V +   +F  K F+V  M+++
Sbjct: 34   QESALQYIGLRIKSSNRSVSRQESIKIAKEVLCQYLLPHVGLDEKSFNQKAFFVGYMIQK 93

Query: 348  MVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPS 403
            ++ A L K + DD+D+ G KRL+++G L+S LF++  +  +    +++Q+ ++  L +P 
Sbjct: 94   LLNAALGKTSEDDRDHYGKKRLDMAGTLMSQLFKERLRLFLRRAKNQLQEKINKTLREPD 153

Query: 404  RSSRFDLSQFIVRDS-ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLAR-LSFIGTLGHM 460
              + F L + I     I+  L   L+TGN+      ++ + G+ QVL R  S   T+ HM
Sbjct: 154  --NEFSLREDIFDHRLISDSLRLALATGNWGQTADGEVAKTGVAQVLKRDTSLFATMSHM 211

Query: 461  TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP-- 518
             RV+   + + K++ PR L  + +G++CP +TPEG+  G+VKN+ALM  V+    EG   
Sbjct: 212  RRVNAPMKSAAKLAKPRQLHNTHYGLICPAETPEGQKIGMVKNMALMAQVSLGFSEGDNK 271

Query: 519  -----LISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
                 L S    +   D+  +S +++  P    V +NG   G   +P      ++K R +
Sbjct: 272  NFLEFLESFQEEVKPFDISQISFDDI--PKLTKVFYNGNWFGFTDKPDDLVSFIKKTRTS 329

Query: 574  GKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR--------------IKEHHM 619
             ++ + +SV  +   + + I +D GR  RPL I +   +R              I+E  +
Sbjct: 330  QEL-KGLSVVRDIINKEIKIYTDSGRCMRPLFIVENYQTRQLKITKQDINKYIQIQEEKI 388

Query: 620  KE-LLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT--------THIEIEPF 670
                +   + F +F +EG IE+LDV EE  A+IA+   D             TH EI P 
Sbjct: 389  NSGDVKEYKLFSEFCKEGFIEFLDVEEEEGAMIAIDINDFYQTEKLRKDLPFTHSEIHPA 448

Query: 671  TILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTT 730
             ILGV A +IP+ HHNQ PRNT Q AMGKQAMG  + N   R+D+L+++L YPQ PL ++
Sbjct: 449  MILGVCASIIPFGHHNQGPRNTLQSAMGKQAMGLNSTNFNLRVDTLVHILYYPQIPLASS 508

Query: 731  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKY 790
            ++ + +    +  G NA VA+  ++GY+ ED+I+MN+SS+DRG  R    + Y    +K 
Sbjct: 509  KSNDYICSKSIPFGINAIVAIACFTGYNQEDSIIMNQSSIDRGLFRSAFFRTYKTQEKKE 568

Query: 791  ---ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKES 847
               A S  + I  PD+         V+ +SN  L  LD DG+  PG  +  +D+ + K  
Sbjct: 569  EMGAFSIKETICFPDQNKT------VIPNSNSFLK-LDYDGIIPPGTQVTGDDILVGKVV 621

Query: 848  PLETRGSIMSPTGQTDSRYRSARQ----TYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 903
             L        P  Q D + ++ +Q    +      E   VD V L  DK+G   +K  +R
Sbjct: 622  EL--------PESQ-DFKSKNFKQFKDVSLCSRRSEIGYVDTVILSEDKDGFYIVKVKLR 672

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              R P++GDKF+SRHGQKG  G  ++ ED PF+ +GI  +LI+NPH  PSRMT+G MIE 
Sbjct: 673  SNRIPQIGDKFASRHGQKGTVGMTIRGEDMPFNIQGIPAELIINPHCIPSRMTIGHMIEG 732

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            L  K     G +   + F         ++ I+  L  HG+   G +++Y+  TG  L   
Sbjct: 733  LNSKLSALKGIWGDATPFS-----GLKLQDIASELHTHGYQKYGNEVLYNPYTGSRLTTQ 787

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1083
            I+ GP YYQ+L+H+V DKM++R  GP V +TRQPT GR+R GGLR GEMERDC+IA+G S
Sbjct: 788  IYFGPTYYQRLRHLVDDKMYSRARGPVVAITRQPTHGRSRGGGLRFGEMERDCIIAHGTS 847

Query: 1084 MLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTC--------KNGDNISSMKLP 1135
              + ER    SD + V VC  CGL+   N      IC  C        KN   I  + LP
Sbjct: 848  NFLKERTFGVSDQYRVHVCSECGLIASANLTDHQYICKGCQESSDQKKKNSYKIVQVFLP 907

Query: 1136 YACKLLIQELQSMNIVPRL 1154
            YA K LIQEL +M+IVPR+
Sbjct: 908  YAAKQLIQELMAMHIVPRI 926


>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Pneumocystis carinii]
          Length = 898

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 316/922 (34%), Positives = 495/922 (53%), Gaps = 90/922 (9%)

Query: 182  TEKVLLIQEQLSKNRVII-------DTDKKGNINASVTSSTETVKSKTVIQM----EKGK 230
            +EKV++ QE+ + N V +              I +++  S++ + +  +  M    EKG 
Sbjct: 1    SEKVIIAQERSAANTVQVFKKPAPSAVSYVAEIRSAIEKSSKLMSNFQIKLMSKSIEKGA 60

Query: 231  ---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECANLD 284
               +   L      IPI++V +A+G+  D+++++ +  DP   +   +L P IEE     
Sbjct: 61   GQTIRACLPYIRNDIPIVIVFRALGVVPDRDIMEHICYDPNDHQMLEMLKPCIEEA--FV 118

Query: 285  IYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVM 344
            I  +E AL+++ GK + S  G     R   A  IL+   L ++         K F++  M
Sbjct: 119  IQEREVALDFI-GK-RGSAVGINREKRLRYAQDILQKELLPHITTTEGYETRKAFFLGYM 176

Query: 345  LRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSR 404
            + R++   L +   DD+D+ G KRL+L+G L++ LF  LFK +  +V K     + K   
Sbjct: 177  IHRLLLCALERRDPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYK----YMQKCVE 232

Query: 405  SSR-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTR 462
            ++R F+L+  +  ++IT GL  +L+TGN+ D K+    R G++QVL R +F  TL H+ R
Sbjct: 233  TNREFNLTLAVKSNTITHGLRYSLATGNWGDQKKIMSARVGVSQVLNRYTFASTLSHLRR 292

Query: 463  VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
             +    +  KV+ PR L  + WG++CP +TPEG+ACGLVKNL+LM++V+      P+I  
Sbjct: 293  TNTPIGRDGKVAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYVSVGSASAPIIEF 352

Query: 523  CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
                G+E+LE  +      PN+  V  NG+ LG HR P    + ++ LRR   I   VSV
Sbjct: 353  LEEWGMENLEDYNPSA--TPNTTKVFVNGVWLGVHRDPYHLVETIKSLRRKLDISVEVSV 410

Query: 583  FVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVR-------- 627
              + +++ + I +D GRVCRPL I D       +G   +K+ H+++++D           
Sbjct: 411  VRDIREKELRIFTDAGRVCRPLFIVDNNPESNSRGQLMLKKEHVQKIIDNKNRTELDNES 470

Query: 628  --SFDDFLREGLIEYLDVNEENNALIALYEGD--------------------------AT 659
               +   +  G++EY+D  EE   +IA+   D                           +
Sbjct: 471  KFGWSSLVANGIVEYIDAEEEETVMIAMTPEDLEATRQIQAGYKIADEIDPARRVKPLVS 530

Query: 660  PDT---THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
            P+T   TH EI P  ILG+ A +IP+P HNQSPRNTYQ AMGKQA+G    N   RMD++
Sbjct: 531  PNTYLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAIGVFLTNYQVRMDTM 590

Query: 717  LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
              +L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+++MN+SS+DRG  R
Sbjct: 591  ANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 650

Query: 777  CIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEII 836
             I  + Y    +K      +   +P R       +++ H +      ++DDGL APG  +
Sbjct: 651  SIFYRSYMDQEKKIGMQIMEEFEKPMRNNC----LKLKHGT---YDKIEDDGLIAPGTRV 703

Query: 837  KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896
              +D+ I K +P+      +   GQ    +     +      E+ ++D+V + ++  G  
Sbjct: 704  SGDDIIIGKTAPIPPNAEEL---GQRTKFHTKRDVSTPLRSTESGIIDQVMVSTNAEGLK 760

Query: 897  CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 956
             +K  +R TR P++GDKF+SRHGQKG  G   + ED PF+  GI PD+I+NPH  PSRMT
Sbjct: 761  FVKVRMRSTRIPQIGDKFASRHGQKGTIGITYRHEDMPFTSEGIVPDIIINPHAIPSRMT 820

Query: 957  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGIT 1016
            V  +IE L  K     G     + F +      TVE+IS+ L +HG+   G +++Y+G T
Sbjct: 821  VAHLIECLLSKVSALSGYEGDATPFTDV-----TVEAISKMLRQHGYQSRGFEVMYNGHT 875

Query: 1017 GCPLQAYIFMGPIYYQKLKHMV 1038
            G  L A +F+GP YYQ+LKHMV
Sbjct: 876  GRKLVAQVFLGPTYYQRLKHMV 897


>gi|83415489|gb|ABC17952.1| RNA polymerase II second largest subunit, partial [Umbelopsis
            ramanniana]
          Length = 717

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/736 (37%), Positives = 423/736 (57%), Gaps = 55/736 (7%)

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSR-FDLSQFIVRDSITVGLER 425
            KR++L+G L++ LF  LFK +  +V K     L K   SSR F+L+  +   +IT GL+ 
Sbjct: 2    KRMDLAGPLMASLFRMLFKKLTKDVAK----YLQKCIESSREFNLTLAVKSSTITNGLKY 57

Query: 426  TLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQW 484
            +L+TGN+ D K+    + G++QVL R +F  TL H+ R +    +  K++ PR L  + W
Sbjct: 58   SLATGNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHW 117

Query: 485  GMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNS 544
             M+CP +TPEG+ACGLVKNLALM++++      PLI       +E+LE LS   +  P++
Sbjct: 118  DMVCPAETPEGQACGLVKNLALMSYISVGSAAAPLILFLEEWAMENLEELSASNI--PDA 175

Query: 545  FLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
              +  NG+ +G HR P      ++++RR+  I   VS+  + +++ + + +D GR CRPL
Sbjct: 176  TKIFVNGVWVGIHRDPGELITSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPL 235

Query: 605  VIADKGISRIKEHHMKELLDGVRSF--DDFLREGLIEYLDVNEENNALIALYEGDATPD- 661
             I +    ++ + H+  L D   ++   D + +G+IEY+D  EE  A+I +   D     
Sbjct: 236  FIVEDQQLKLTKDHVALLQDPDSNYRWQDLISDGIIEYIDAEEEETAMICMTPEDLAESR 295

Query: 662  -----------------------------TTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
                                          TH EI P  ILG+ A +IP+P HNQSPRNT
Sbjct: 296  YSAEYGKPLQSDRDVASRLKTQQSGYSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 355

Query: 693  YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
            YQ AMGKQAMG    N   RMD+L  +L YPQ+PL TTR++E + + +L AGQNA VA++
Sbjct: 356  YQSAMGKQAMGVYLTNYQVRMDTLANILYYPQKPLTTTRSMEFLRFRELPAGQNAIVAIL 415

Query: 753  SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ 812
             YSGY+ ED+++MN+SS+DRG  R + ++ Y    +K      +   +P R       ++
Sbjct: 416  CYSGYNQEDSVIMNQSSIDRGLFRSLFLRTYMDAEKKAGMMFMEEFEKPTRDNT----LR 471

Query: 813  VVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQT 872
            + H +      L++DGL APG  +  +D+ I K +P+      +   GQ    +     +
Sbjct: 472  LKHGT---YEKLEEDGLIAPGTRVSGDDIIIGKTAPIPADSEEL---GQRTKGHNKRDAS 525

Query: 873  YKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 932
                  ET +VD+V + ++++G   +K  +R TR P++GDKF+SRHGQKG  G   + ED
Sbjct: 526  TPLRSTETGIVDQVMVTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYRHED 585

Query: 933  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVE 992
             PFS  G+ PD+I+NPH  PSRMT+G ++E L GK     G     + F +      TVE
Sbjct: 586  LPFSGEGVTPDIIINPHAIPSRMTIGHLVECLLGKVPTLTGNEGDATPFTDV-----TVE 640

Query: 993  SISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1052
            ++S+ L + G+   G +++Y+G TG  L A +F+GP YYQ+LKHMV DK+H+R  GP  +
Sbjct: 641  AVSQALAEQGYQQRGFEVMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 700

Query: 1053 LTRQPTEGRARNGGLR 1068
            LTRQP EGR+R+GGLR
Sbjct: 701  LTRQPVEGRSRDGGLR 716


>gi|88601072|gb|ABD46532.1| RNA polymerase II second largest subunit, partial [Vuilleminia
            comedens]
          Length = 880

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 300/838 (35%), Positives = 458/838 (54%), Gaps = 73/838 (8%)

Query: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEK--ALEYLEGKV 299
            IPI +  +A+G+ SD+++++ +  D +    +L  ++ C +  I+ Q++   L+Y+  + 
Sbjct: 68   IPIWIXFRALGVISDRDILEHICYDMQ-DTQMLEMLKPCIDDGIFVQDREVCLDYIGNR- 125

Query: 300  KRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMD 359
              +T G     R   A  IL+   L +V +   +   K ++   M+ R++ A L +  +D
Sbjct: 126  -GTTTGLSRERRLXYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELD 184

Query: 360  DKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI 419
            D+D+ G KRL+L+G L++ LF  LF+ +  +V + +   +     S  F++S  +  ++I
Sbjct: 185  DRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVET---SKEFNISLAVKHNTI 241

Query: 420  TVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRA 478
            T GL+ +L+TGN+ D K+    + G +QVL R ++  TL H+ R +    +  K++ PR 
Sbjct: 242  TNGLKYSLATGNWGDQKKSMASKAGXSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 301

Query: 479  LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEE 538
            L  + WGM+CP +TPEG+ACGLVKNLALM+ ++      P+I      G+E LE    E 
Sbjct: 302  LHNTHWGMVCPAETPEGQACGLVKNLALMSTISVGSYSAPVIEFLEEWGLESLE----EN 357

Query: 539  LHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
             H+      +F NG+ +G HR P      +++LRR   I   VSV  + ++R + IA+D 
Sbjct: 358  AHSQTPCTKVFVNGVWMGVHRDPANLVKTIKQLRRKDDISPEVSVVRDIRERELRIATDA 417

Query: 598  GRVCRPLVIADKGISRIKEHHMKEL---------LDGVRS-----FDDFLREGLIEYLDV 643
            GRVCRPL I +     +K+ H+  L          DGV+      FD  ++EG+IEYLD 
Sbjct: 418  GRVCRPLFIVNNKELALKKKHIDLLNVGKHYVTTADGVQEEQDYKFDSLVKEGVIEYLDA 477

Query: 644  NEENNALIAL----------YEGDATPD--------------------TTHIEIEPFTIL 673
             EE   +I +           E  A PD                     TH EI P  IL
Sbjct: 478  EEEETVMICMTPTELDRARRIELGAKPDDEDEEYDPAARIETATLAHTWTHCEIHPSMIL 537

Query: 674  GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
            G+ A +IP+P HNQSPRNTYQ AMGKQAMG    N L RMD++  +L YPQ+PL TTR++
Sbjct: 538  GICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSM 597

Query: 734  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
            E + + +L AGQNA VA+M YSGY+ ED+++MN+SS+DRG  R +  + Y  + +K    
Sbjct: 598  EYLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSVDRGLFRSMYYRSYMDVEKKSGVQ 657

Query: 794  TSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRG 853
              ++ ++P R      RM+   +       ++DDGL APG  +   D+ I K +P+    
Sbjct: 658  ELEKFMKPTRD--TTLRMKHGTYDK-----IEDDGLIAPGTNVNGEDIIIGKTAPIPPDS 710

Query: 854  SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 913
              +    +  +R R      K    E   VD+V L ++ +G   +K  IR TR P++GDK
Sbjct: 711  EELGQRTRGHTR-RDVSTPLKST--EQGTVDQVLLTTNADGQKFVKVRIRSTRIPQIGDK 767

Query: 914  FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 973
            F+SRHGQKG  G   +QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G
Sbjct: 768  FASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLLG 827

Query: 974  RFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1031
            +    + F E      TVES+S+ L   G+   G +++Y G TG  L A I++GP YY
Sbjct: 828  QEGDATPFTEL-----TVESVSKYLRDRGYQSRGLEIMYHGHTGKKLNAQIYLGPTYY 880


>gi|81990385|sp|Q7T6X7.2|RPO2_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 2
 gi|55664869|gb|AAQ09583.2| DNA directed RNA polymerase subunit 2 [Acanthamoeba polyphaga
            mimivirus]
          Length = 1196

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 387/1217 (31%), Positives = 621/1217 (51%), Gaps = 136/1217 (11%)

Query: 32   FQLLPEFLKV--RGLVKQHLDSFNYFVNTGIRKIVRANDRIVS--GIDPSIF---LRFKD 84
            F LL  F +   + LVK H+DSFN F+   I  I++  D ++S    +  I    L F D
Sbjct: 21   FALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKIIRYRLTFND 80

Query: 85   VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS---HTEKTTME-----K 136
            + I  P  T++     L P       ++Y+A     +   Q      T+KT        +
Sbjct: 81   LGIKPP--TLENEENLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPE 138

Query: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
             DV I +IPIM+ S  C L  + +        C  D GGYFI+ G+EKV+L  E +   +
Sbjct: 139  KDVPIAKIPIMVLSKYCNLTLRPDIAGK---HCKYDAGGYFIVNGSEKVVLSVESMIPRK 195

Query: 197  VIIDTDKKGN-----INASVTSSTETVKSKTV--IQMEKGKMYLLLNQFVKKIPIMVVMK 249
             ++ T +  N     +      +++ V +  +  ++M++    +L     K++ I   ++
Sbjct: 196  PVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIR 255

Query: 250  AMGMESDQEVVQMVGRDPRYSALLLPSIEEC---ANLDIYTQEKALEYLEGKVKRS-TF- 304
            A+G+E+D+++V  +  D +    LL  +  C   +N    T+E+ALE +  ++K + TF 
Sbjct: 256  ALGIETDEDIVDSI-LDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFT 314

Query: 305  GSPPNDREGRAFSILRDVFLANVPVH--NNNFRP------KCFYVAVMLRRMVEAML--- 353
             + P  +  +    L  +    V  H  +    P      K  Y+  M+ ++++  L   
Sbjct: 315  DTNPEVKAEQRRRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGA 374

Query: 354  ----NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK---TVDIILSKPSRSS 406
                     DD+D + NKR++L+G+L+  LF+  +  M+++  K   T +I   KP    
Sbjct: 375  REVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP--- 431

Query: 407  RFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-SP 465
              ++   I  +SI  GL + LSTGNF  +     RKG++Q+L R++ + +L +M RV +P
Sbjct: 432  --NIIPHIKPNSIEQGLRQALSTGNFGSQS----RKGLSQMLNRMNHLHSLSYMRRVITP 485

Query: 466  QFEKSR-KVSGPRALQPSQWGMLCPCDTPEGE-ACGLVKNLALMTHVTTDEEEGPLISLC 523
              + S  K++ PR L  +Q+G +CP ++PEG+   GLVKN+A+M  +T +      I   
Sbjct: 486  TVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIES 545

Query: 524  YCLG-VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
            Y +G +  LE  + + LH      V  NG  LG  R      + +R +R  G++   V +
Sbjct: 546  YLIGKITTLESANKKRLHQ--YVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGL 603

Query: 583  FVNEKQRCVYIASDGGRVCRP-LVIADKGISRIKEHHMKELLDGVRSFDDFLRE--GLIE 639
             +N K    +I +DGGR+ RP L + D      K +   E+LD V S+++FL +   +IE
Sbjct: 604  VLNYKTAEFHIYTDGGRLIRPYLTVTDN-----KLNFKPEMLDEVNSWEEFLAKFPEVIE 658

Query: 640  YLDVNEENNALIAL-------------------------------YEGDATPDTTHIEIE 668
            Y+D  EE N ++A+                               Y+ +     TH EI 
Sbjct: 659  YVDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIH 718

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
            P  ILG+I+  IP+P HNQSPR  +Q    +QAMG    +   R D + Y+L +PQ PL+
Sbjct: 719  PCMILGLISSNIPFPDHNQSPRGIFQYNQARQAMGLYISDYRERTD-ISYILYHPQIPLV 777

Query: 729  TTRTIELVGYDKLGAGQNATVAVMSYSGY-DIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            T+R  +  G     AG+N+ VA+ SY+G  + ED++V+N S++ +G+ R   +KKY  I 
Sbjct: 778  TSRASKYTGTHIFPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEII 837

Query: 788  QKY-ANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKE 846
            +K  A+S +   ++PDR     + ++  ++  L      ++G A    +I+  DV I   
Sbjct: 838  KKNPASSQTSIFMKPDRNK--VDNLRDANYDKL-----SEEGYAKVETVIRDGDVVIGVV 890

Query: 847  SPLETRGSIMSPTGQTDSR-YRSARQTYKG--PDGETCVVDRVALCSDKNGDLCIKFLIR 903
            +P         PT + D + Y+ A   YK   P      VD+V    + +G   IK  IR
Sbjct: 891  NP--------KPTAREDEKQYKDASSIYKSLIPGA----VDKVITEVNNDGYPIIKMRIR 938

Query: 904  HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 963
              R P +GDKFSSR GQKG  G    + D  FS+ G+ PD+I+NP+  P RMT+G++IE 
Sbjct: 939  SERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIEC 998

Query: 964  LGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAY 1023
            L GK     G   YG A   P    D + +I++ LV  G+   G + +Y+G+ G  L   
Sbjct: 999  LLGKLCAVKGV--YGDA--TPFTSVD-LNAINDELVAAGYEEWGNETMYNGMNGKKLPVK 1053

Query: 1024 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVG-EMERDCLIAYGA 1082
            IF+GP YYQ+LK MV DK H+R  GP  +LTRQ  EGR+R+GGLR+G EMERD L A+G 
Sbjct: 1054 IFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGV 1113

Query: 1083 SMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLI 1142
            +  + E+ + +SD +   VC  CG   +   + K   C+ C+N  +IS + +PYA KLL+
Sbjct: 1114 AQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLL 1173

Query: 1143 QELQSMNIVPRLKLAEA 1159
            QEL S+NI+ +++ ++ 
Sbjct: 1174 QELASINILGKIRTSKT 1190


>gi|83415483|gb|ABC17949.1| RNA polymerase II second largest subunit, partial [Mortierella
            verticillata]
          Length = 721

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/740 (38%), Positives = 418/740 (56%), Gaps = 59/740 (7%)

Query: 367  KRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERT 426
            KR++L+G L+  LF+ LF  +  +V K +   +     +  F LS  +  ++IT GL+ +
Sbjct: 2    KRMDLAGPLLGGLFKMLFTKLTKDVSKYLRKCIDS---NKDFVLSVAVKSNTITNGLKYS 58

Query: 427  LSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
            L+TGN+  +   M  R G++QVL R +F  TL H+ R +    +  K++ PR L  + WG
Sbjct: 59   LATGNWGEQLKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKLAKPRQLHNTHWG 118

Query: 486  MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSF 545
            M+CP +TPEG+ACGLVKNLALM+ ++      P+I      G+E+LE L+   + +    
Sbjct: 119  MVCPAETPEGQACGLVKNLALMSAISVGSPSAPIIEFLEGWGMENLEELTANNILDATKV 178

Query: 546  LVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLV 605
             V  NG+  G HR P    + +++LRR   I   VS+  + +++ + + +D GR  RPL 
Sbjct: 179  FV--NGVWAGVHRDPGSLVNTLKRLRRNMDINSEVSIVKDIREKELRMYTDAGRCLRPLF 236

Query: 606  IADKGISRIKEHHMKELL------DGV----RSFDDFLREGLIEYLDVNEENNALIALYE 655
            I +     +++ H+ EL       DG       ++D L  G++E++D  EE   +I +  
Sbjct: 237  IVEDQALLLRKEHIDELTRAPYYEDGKAMEPWGWNDLLSNGIVEFVDAEEEETIMICMTP 296

Query: 656  GD---------------------ATPDT-----THIEIEPFTILGVIAGLIPYPHHNQSP 689
             D                      T  T     TH EI P  ILG+ A +IP+P HNQSP
Sbjct: 297  DDLAESRQVDHVQQPKDAAQRVKGTSSTSLHTWTHCEIHPSMILGICASIIPFPDHNQSP 356

Query: 690  RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
            RNTYQ AMGKQAMG    N   RMD+L  +L YPQ+PL TTR++E + + +L AGQNA V
Sbjct: 357  RNTYQSAMGKQAMGIYVTNYQVRMDTLANILYYPQKPLATTRSMEYLRFRELPAGQNAVV 416

Query: 750  AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809
            A++ YSGY+ ED+++MN+SS+DRG  R +  + Y    +K   +T +   +P R     E
Sbjct: 417  AILCYSGYNQEDSVIMNQSSIDRGLFRSVYFRTYMDQEKKIGMTTMEEFEKPTR-----E 471

Query: 810  RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSA 869
             +  + H       LDDDGL APG  +  +D+ I K  P+    + M   GQ    +   
Sbjct: 472  HVLRLRHGTYEK--LDDDGLIAPGTRVSGDDIIIGKTKPIPVDSTEM---GQRTGSHSKL 526

Query: 870  RQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 929
              +      ET +VD+V L ++  G   +K  +R TR P++GDKF+SRHGQKG  G   +
Sbjct: 527  DASTPLRSTETGIVDQVMLTTNHEGVKFVKVRVRSTRVPQMGDKFASRHGQKGTIGITYR 586

Query: 930  QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHAD 989
            QED PF+  GI PD+I+NPH  PSRMT+G ++E L  K     G      + G+ +   D
Sbjct: 587  QEDMPFTCEGITPDIIINPHAIPSRMTIGHLVECLLSKVSTLEG------SEGDATPFTD 640

Query: 990  -TVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSG 1048
             TVE+ISE L KH +   G +++Y+G TG  L A +F+GP YYQ+LKHMV DK+H+R  G
Sbjct: 641  VTVEAISEALKKHNYQQRGFEVMYNGHTGRKLAAQVFLGPTYYQRLKHMVDDKIHSRARG 700

Query: 1049 PRVMLTRQPTEGRARNGGLR 1068
            P  +LTRQP EGR+R+GGLR
Sbjct: 701  PVQILTRQPVEGRSRDGGLR 720


>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
          Length = 704

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/685 (40%), Positives = 387/685 (56%), Gaps = 35/685 (5%)

Query: 484  WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPN 543
            WGM+CP +TPEG+ACGLVKNLALM ++T      P++        E+ E +S   +  PN
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMAYITVGSAVNPILEFLEEWSTENFEEISPAVI--PN 58

Query: 544  SFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRP 603
            S  +  NG  +G HR P+     +R+LRR   +   V V  + + + + + +D GR  RP
Sbjct: 59   STKIFVNGSWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRP 118

Query: 604  LVIADKGISRIKEHHMKELLDGVRS---FDDFLREGLIEYLDVNEENNALIALYEGD--- 657
            L I +K    IK+  ++ L     +   + D + +G IEY+D  EE   +I++   D   
Sbjct: 119  LFIVEKQRLLIKKSDVRALQQKEATESGWYDLVSKGFIEYVDTEEEETTMISMTIADLVN 178

Query: 658  --ATPDT------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQ 709
                P+       TH EI P  ILGV   +IP+P HNQSPRNTYQ AMGKQAMG    N 
Sbjct: 179  ARNNPEASFSVTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY 238

Query: 710  LCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 769
              RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+  YSGY+ ED+++MN+SS
Sbjct: 239  QLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSS 298

Query: 770  LDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHSNLLLLILDDDGL 829
            +DRGF R I  + Y    ++      +   RP+R      R             LDDDGL
Sbjct: 299  IDRGFFRSIFYRSYRDEEKRQGTLIKEEFERPNRENTTGMRHGSYDE-------LDDDGL 351

Query: 830  AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889
            A PG  +   DV I K +PL               RY    Q+      E+ ++D+V L 
Sbjct: 352  APPGTRVSGEDVIIGKTTPLP-----QDDNASQAQRYTKRDQSTCLRHSESGMIDQVLLT 406

Query: 890  SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949
            ++ +G   +K  +R  R P++GDKFSSRHGQK   G    QED P+++ GI PD+I+NPH
Sbjct: 407  TNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKCTVGMTYTQEDMPWTQEGITPDIIVNPH 466

Query: 950  GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKD 1009
              PSRMT+G++IE + GK     G+    + F +      TV++IS+ L K G+   G +
Sbjct: 467  AIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDA-----TVDNISKALHKCGYQMRGFE 521

Query: 1010 MIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRV 1069
            ++Y+G TG  L A+IF+GP YYQ+LKHM+ DK+H+RG GP  +LTRQP EGR+R GGLR 
Sbjct: 522  VMYNGHTGRRLSAHIFLGPTYYQRLKHMMDDKIHSRGRGPVQILTRQPAEGRSRVGGLRF 581

Query: 1070 GEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129
            GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N K     C  CKN   +
Sbjct: 582  GEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTYECRACKNKQTL 641

Query: 1130 SSMKLPYACKLLIQELQSMNIVPRL 1154
             S    YA        Q +++  RL
Sbjct: 642  CSALYHYALXTFF--FQKLDVXWRL 664


>gi|159116724|ref|XP_001708583.1| DNA-directed RNA polymerase RPB2 [Giardia lamblia ATCC 50803]
 gi|21842205|gb|AAM77733.1|AF510641_1 RNA polymerase II subunit Rpb2 [Giardia intestinalis]
 gi|157436695|gb|EDO80909.1| DNA-directed RNA polymerase RPB2 [Giardia lamblia ATCC 50803]
          Length = 1293

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 384/1301 (29%), Positives = 612/1301 (47%), Gaps = 200/1301 (15%)

Query: 32   FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI-----FLRFKDVR 86
            ++++  +   RGL    +DS+N+FV   ++ I+ +   I      +       L F D +
Sbjct: 14   WKVVDSWFYCRGLAAMQIDSYNHFVKHTMKNIMASFPPIQVTRTENFCCYNHILSFSDPQ 73

Query: 87   IGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT--------EKTTMEKND 138
            + +P++        + P+ CR+   +Y A I V I Y    ++        ++ T E   
Sbjct: 74   L-EPNV-------HIKPNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKL 125

Query: 139  VVIGRIPIMLRSCRCVL-----YGKD-EAELARLGECPLDPGGYFIIKGTEKVLLIQEQL 192
            +     P+M+ SC C L      G D +A      ECP D GGYFII+G EK ++ QE  
Sbjct: 126  IDFCLFPVMVNSCLCYLNTNKVAGSDIKAHRIINDECPYDEGGYFIIRGAEKAVIAQEGN 185

Query: 193  SKNRVII---DTDKKGNINASV--TSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVV 247
              NR++I   D   K    A +  T+ST+ + SK V++      +    Q + +  I   
Sbjct: 186  RPNRLLILPGDPGSKIPYTAQLVSTNSTKNLHSKVVLKYWSTNKWGRTIQDINQPQITFT 245

Query: 248  MKAM----------------GMESDQEVVQMVGRDPRYSAL---LLPSIEECANLDIYTQ 288
            M+ +                 + + ++++ +V  D   + L   LLPS     +    ++
Sbjct: 246  MQGIRDDLPLFLLILALWQDNVYAARDLLSIVVPDESDTELIEHLLPSYNLFCSTPQSSK 305

Query: 289  EKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRM 348
            +K +E+L G++           +  R  S L    L ++ V       K F++  M   +
Sbjct: 306  DKCIEFLAGRLVVGEQMDSAKAKYDRLMSHLSTRLLPHIGVTPEFHLDKAFFIGYMTNLL 365

Query: 349  VEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV-----------DI 397
            ++ ++ + + DD+D+ G KRL+L+G L++  F   ++  +  + + +           DI
Sbjct: 366  LQTVVGRRSPDDRDHWGGKRLQLTGSLLADKFRFEYELFLRRLARKLHDTGSILKVKEDI 425

Query: 398  ILSKPS-------RSSRFDLS----------------QFIVRDSITVGLERTLSTGNFDV 434
             +  P+         S++D                  +      I+  +   LSTG +  
Sbjct: 426  SMVSPNIEGSSFIPQSKYDTHGKVPGLEDPRRLLDRIKVAATSYISKNITSALSTGTWKT 485

Query: 435  KRFKMHRK-GMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
                 + K G++Q L RLS+   L  + R S   E++ K  GPR L  +Q+G +CP +TP
Sbjct: 486  NEVVGNTKSGVSQSLVRLSYTSALSQIRRSSSSVEETSKAIGPRLLHTTQFGYMCPAETP 545

Query: 494  EGEACGLVKNLALMTHVTTD--EEEGPLISLCYCLGVEDLE-----LLSGEELHNPNSFL 546
            EG   GL+KN +LM +VT D  ++E  L  L     V+        L S   + N    +
Sbjct: 546  EGAKVGLIKNFSLMANVTLDNPKDEHDLRKLLTEYRVQASHGPISVLKSFHTVTNAKKLV 605

Query: 547  ----VIFNGLILGKHRRP---KCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGR 599
                +  NG  LG   R    +   D +++ R  GKI   VS+     ++ + I+SD GR
Sbjct: 606  SDVKIFLNGSWLGFIDREYVQRLITD-LKRWRFEGKINREVSISYLAHKQEISISSDEGR 664

Query: 600  VCRPLVIADKGIS-----------RIKEHHMKEL--LDGVRSFDDFLR-----EGLIEYL 641
            V RP+ +    I             I E  ++ L  +  +  ++  L      + +IE+L
Sbjct: 665  VTRPVFVVITDIHPTLKLVTNLSLAITEEDVETLATIPQMEQWNSLLSGLGTGKCMIEFL 724

Query: 642  DVNEENNALIA--------------------LYEGDATP-------------DTTHIEIE 668
            D NEE  ALI                     L  G+                + TH+EI 
Sbjct: 725  DPNEEEMALICMDIYHFKEEIQKAHTIRDIILAHGEDNAINYIKAHNIPLANNYTHLEIH 784

Query: 669  PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMD-SLLYLLVYPQRPL 727
            P  +L  I  LIP+P HNQSPRN YQ +MGKQA+G  A N L R D S + ++ YPQ PL
Sbjct: 785  PSMVLSAITSLIPFPDHNQSPRNLYQASMGKQAVGIYALNYLKRFDTSGINVMHYPQLPL 844

Query: 728  LTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
            +TTR++  V +  L AGQN  +A+  YSG++ ED+++M++S++DRGF R      Y    
Sbjct: 845  VTTRSMPHVKFRYLPAGQNVIIAIAVYSGFNQEDSLIMSQSAVDRGFMRATYYHTY---- 900

Query: 788  QKYANSTSDRILRPDRT-------GPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPND 840
            ++  +S +  I  PDR        GP  + ++    ++ L    + DGL   G  +    
Sbjct: 901  EEMISSAASSINAPDRIEKFCRPIGPNIKGIKDPGCASYL----EADGLPRVGNAVNSQR 956

Query: 841  VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD--------- 891
            + I K  P     +  S   +  S Y     + K    ET  VD V +  D         
Sbjct: 957  LIIGKIRP-----NKRSMNSRAVSTYDFQDVSLKVKMEETGRVDSVIIAPDLREQSFLSE 1011

Query: 892  --------KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPD 943
                      G L  K  +R +R P+LGDKFSSRHGQKG  G +++ ED PF+  GI PD
Sbjct: 1012 GVDSNTTGAEGSLLAKVRVRSSRVPQLGDKFSSRHGQKGTVGMLLRHEDLPFTLDGITPD 1071

Query: 944  LIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKHGF 1003
            +IMNPH  PSRMT+G+++E +  K G   G    G+AF  P G  D  + I+  L   G+
Sbjct: 1072 IIMNPHAIPSRMTIGQLMESVASKLGALSGHEVDGTAFNAPPGSTD--KQIAADLHARGY 1129

Query: 1004 SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRAR 1063
              +  + + +G+TG  +   IF+GP +YQ+LKHMVLDK+ +R +GP V LTRQP EGR+ 
Sbjct: 1130 QKHNYEAMMNGMTGEMMTYRIFIGPTFYQRLKHMVLDKISSRNTGPIVTLTRQPNEGRSN 1189

Query: 1064 NGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAG----- 1118
             GG+R+GEME+D  IA+GA+ ++ +RL+ SSD  E  VC+ CG++ ++    K       
Sbjct: 1190 YGGMRIGEMEKDAFIAHGATAILRDRLLFSSDVSEFLVCQNCGIICWHADSRKLTTKKSP 1249

Query: 1119 ---ICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKL 1156
               ICS     D+ + + +PYA KL  QE+  M + PR+++
Sbjct: 1250 HCMICSESSTTDSFARITIPYAAKLFFQEIIGMGVFPRIEV 1290


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,018,830,517
Number of Sequences: 23463169
Number of extensions: 782991857
Number of successful extensions: 1688061
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16698
Number of HSP's successfully gapped in prelim test: 968
Number of HSP's that attempted gapping in prelim test: 1589698
Number of HSP's gapped (non-prelim): 48543
length of query: 1159
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1005
effective length of database: 8,745,867,341
effective search space: 8789596677705
effective search space used: 8789596677705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)