Query 001092
Match_columns 1159
No_of_seqs 228 out of 1630
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:39:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 3E-295 1E-299 2760.1 43.0 1110 25-1158 11-1208(1210)
2 1twf_B DNA-directed RNA polyme 100.0 3E-291 1E-295 2757.5 74.7 1109 25-1158 24-1220(1224)
3 4ayb_B DNA-directed RNA polyme 100.0 1E-269 4E-274 2577.5 75.0 1101 24-1158 6-1120(1131)
4 2a6h_C DNA-directed RNA polyme 100.0 7E-231 3E-235 2153.2 41.8 942 28-1158 2-1105(1119)
5 3lu0_C DNA-directed RNA polyme 100.0 7E-216 2E-220 1989.0 43.4 945 24-1155 7-1340(1342)
6 3mlq_A DNA-directed RNA polyme 100.0 1.7E-30 5.9E-35 269.5 10.0 118 43-196 2-131 (188)
7 3tbi_B DNA-directed RNA polyme 99.3 8.2E-13 2.8E-17 138.6 6.1 99 778-891 2-107 (228)
8 3qqc_A DNA-directed RNA polyme 99.1 2.8E-11 9.7E-16 141.5 5.5 63 1096-1158 2-64 (436)
9 3lti_A DNA-directed RNA polyme 98.8 4.7E-08 1.6E-12 107.6 15.5 68 192-264 4-78 (296)
10 3mlq_A DNA-directed RNA polyme 96.4 0.0016 5.6E-08 67.6 3.9 64 364-432 121-184 (188)
11 1gh9_A 8.3 kDa protein (gene M 58.8 3.6 0.00012 35.7 1.6 48 1097-1146 2-55 (71)
12 1yuz_A Nigerythrin; rubrythrin 35.4 17 0.00058 38.0 2.6 28 1095-1126 167-195 (202)
13 1dl6_A Transcription factor II 22.8 51 0.0017 27.3 2.8 34 1092-1125 4-38 (58)
14 2apo_B Ribosome biogenesis pro 22.5 38 0.0013 28.4 1.9 25 1098-1128 5-29 (60)
15 3pwf_A Rubrerythrin; non heme 22.0 48 0.0016 33.6 3.0 26 1098-1126 137-162 (170)
16 1pft_A TFIIB, PFTFIIBN; N-term 21.4 49 0.0017 26.2 2.3 27 1099-1125 5-32 (50)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-295 Score=2760.06 Aligned_cols=1110 Identities=38% Similarity=0.629 Sum_probs=1009.9
Q ss_pred CcccccccccccccccccchHHHHHHHHHHHHHhChHHHHhccCceeecCC-----------CcEEEEEeEEEEcCCccc
Q 001092 25 VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVRIGQPSMT 93 (1159)
Q Consensus 25 ~~~~~~~~~~i~~~~~~~~Lv~~qi~SFn~Fl~~gL~~i~~~~~~I~~~~~-----------~~~~l~f~~i~i~~P~~~ 93 (1159)
.++.+|+|.++++||+.++||+|||||||+|+++||++|++++++|+++.+ .++.|+|++++|++|++.
T Consensus 11 ~~~~ed~w~li~aff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~~ 90 (1210)
T 3h0g_B 11 TLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTMT 90 (1210)
T ss_dssp CCCHHHHHHHHHHHHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCCB
T ss_pred cCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCcee
Confidence 378899999999999999999999999999999999999999999976542 368999999999999998
Q ss_pred cCC-cCCCCChhhHhhcCCccCccEEEEEEEEECCcc----------c---ceeeEEeeEEEeecceeeccccccCCCCC
Q 001092 94 VDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT----------E---KTTMEKNDVVIGRIPIMLRSCRCVLYGKD 159 (1159)
Q Consensus 94 ~~~-~~~~l~P~EcR~r~lTYsa~L~v~i~~~~~~~~----------~---~~~i~~~~v~lG~IPIMv~S~~C~L~~ls 159 (1159)
+++ ..+++||+|||+|++||+|||+|+|+++.++.. . .......++.+|+|||||||++|||++++
T Consensus 91 e~d~~~~~l~P~EcRlR~lTYsapl~Vdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C~L~g~s 170 (1210)
T 3h0g_B 91 EADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVS 170 (1210)
T ss_dssp CTTSCBCCCCTTTTTTTCCCCEEEEEEEEEC---------------------CCSSCCCEEEEEEECCSSSTTSSSSSCC
T ss_pred cCCCcccccCHHHHHhcCCccceeEEEEEEEEEcCccccccccccccccccccccccceEEEecCCEEeCCCcccCCCCC
Confidence 877 788999999999999999999999999865411 0 01122357999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcEEEEcCchhhhHhhhhccCCeEEEEeCCC---CcEEEEEEecCCCcc----eEEEEEee-----
Q 001092 160 EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK---GNINASVTSSTETVK----SKTVIQME----- 227 (1159)
Q Consensus 160 ~~eli~~~E~~~d~GGYFIING~ERVI~~q~~~s~N~i~~~~~~~---g~~~a~v~s~~~~~~----s~~~~~~~----- 227 (1159)
++||++.||||+|+||||||||+||||++|+++++|+|++++++. ..+.|.++|++.+.+ +.++.++.
T Consensus 171 ~~eL~~~gEcp~D~GGYFIING~EKVII~qerla~N~~iv~~~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~~~~~~~ 250 (1210)
T 3h0g_B 171 DSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTEN 250 (1210)
T ss_dssp HHHHHHTTCCTTCCCCCBCGGGSCBCCCBCBCCCCSCCCCCCCCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCCCCCTTS
T ss_pred HHHHHhcCCCCCCCCCEEEEeCEEEEEEechhhccceEEEEeecCCCCceEEEEEEEEecCCccceeEEEEEEEeccccC
Confidence 999999999999999999999999999999999999999986543 246788888876532 22233332
Q ss_pred -CCEEEEEEcceeccccHHHHHHHhcCCCHHHHHHHhC---CchhhHhhhhHhHHHHHhcCCcCHHHHHHHHhhhcccCC
Q 001092 228 -KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRST 303 (1159)
Q Consensus 228 -~g~i~~r~~~~~~~IPl~ilLrALG~~sD~eI~~~i~---~~~~~~~~l~~~l~~~~~~~i~t~~~Al~yIg~r~r~~~ 303 (1159)
++.++++++.++.+||++++|||||.+||+||++.|. .+.++.+.|.++++++. .++|+++||+|||+|++..
T Consensus 251 ~~~~i~~~~~~~~~~IPi~ivlkALg~~sD~EI~~~I~~~~~d~~~~~~l~~slee~~--~i~tq~~aL~yIG~r~~~~- 327 (1210)
T 3h0g_B 251 SGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAF--VIQDKDIALDYIGKRGSTT- 327 (1210)
T ss_dssp CSCCCCCCCTTSCSCCCSHHHHTTTTCCSTTHHHHHHCCSSCCHHHHHTHHHHHHTTS--SCCSSHHHHHTTCCCSSSC-
T ss_pred CCceEEEEEeccccCCcHHHHHHHcCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHHHhcccc-
Confidence 5689999999888999999999999999999999994 57788999999998874 4889999999999999853
Q ss_pred CCCCCCChHHHHHHHHHhhhccCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCCCcccccCcEEcchhHHHHHHHHHH
Q 001092 304 FGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDL 383 (1159)
Q Consensus 304 ~~~~~~~~~e~~~~~L~~~ll~Hl~~~~~~~~~K~~~L~~Mi~kLl~~~~g~~~~DD~D~l~NKRv~l~G~Ll~~lfr~~ 383 (1159)
..++.+ +++.|+++|++++|||++..+.++.+||.||++|+|||++++.|.+.+||+|||+||||+++|+||+.+||+.
T Consensus 328 ~~~~~~-~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~Ll~~lfr~~ 406 (1210)
T 3h0g_B 328 GVTREK-RLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRML 406 (1210)
T ss_dssp CCCHHH-HHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHHHHHHHHHH
T ss_pred CCCchh-HHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHHHHHHHHHH
Confidence 234445 7899999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccccccccchHHHHHHHhccCCCc-ccccccccccceEEccccccccccccccc
Q 001092 384 FKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD-VKRFKMHRKGMTQVLARLSFIGTLGHMTR 462 (1159)
Q Consensus 384 l~~~~~~ik~~i~k~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~-~~~~~~q~sGvsq~l~RlN~ls~LshlRr 462 (1159)
|+++++.+++.+.+.+.+. ..+++..+++++.||++|++|||||||+ .++++++++||||+|+|+||+|+||||||
T Consensus 407 ~~~~~~~i~~~l~k~~~~~---~~~~~~~~i~~~~It~~l~~~laTGNW~~~kk~~~~~sGvsqvl~R~n~~s~lShlRr 483 (1210)
T 3h0g_B 407 FRKMTRDVYKYMQKCVETN---REFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRR 483 (1210)
T ss_dssp HHHHHHHHHHHHHHHHTTC---CSCCCTTSSCSTTTSHHHHHHHSSSCSSTTSSCCSCCCCSCCBCCCSSHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHhhcC---CccCHHHhcchhhhHHHHHHHhhcCCcccccccccCcCCEEEEcccCCHHHHHHHHHh
Confidence 9999999999999987764 3567778888999999999999999998 56788899999999999999999999999
Q ss_pred cccccccccccCCCCccCCCCCccccccCCCCCCcchhhhhcccceeeccCCCchhHHHHHhhcCCeeccccCccccCCC
Q 001092 463 VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542 (1159)
Q Consensus 463 v~s~f~~~~K~t~~R~Lhps~wG~iCPveTPEG~~cGLi~~LA~~a~Vt~~~~~~~i~~~l~~lG~~~l~~~~~~~~~~~ 542 (1159)
++++|++++|+++||+||||||||+||+|||||++||||||||++|.||++.+++||.++|.++||++++.+.+... +
T Consensus 484 v~~p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~pI~~~l~~~gme~le~~~~~~~--~ 561 (1210)
T 3h0g_B 484 TNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSAS--P 561 (1210)
T ss_dssp BCCSCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSSHHHHHHHSSSCCCCSCCCSSSS--S
T ss_pred ccCchhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcHHHHHHHHHhCCcchhhcCcccC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665443 4
Q ss_pred CcEEEEEcCeEEEeecChhhHHHHHHHHhhcCCCCceeEEEecccCceEEEecCCCeeeeeEEEEecC-------cccch
Q 001092 543 NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG-------ISRIK 615 (1159)
Q Consensus 543 ~~~~V~lnG~~iG~~~~~~~~~~~lr~~Rr~~~i~~~vsi~~~~~~~~i~I~td~GRl~RPl~~v~~~-------~~~~~ 615 (1159)
+.++|||||+|||+|.+|..|++.||.+||+|.|+.+|||+++...++++||||+||+||||++|+|+ ++.++
T Consensus 562 ~~tkVfvNG~wVGvh~dp~~Lv~~lR~lRR~g~Is~eVSIvrdir~rE~~IfTDaGRv~RPLfvVen~~~~~~~g~L~l~ 641 (1210)
T 3h0g_B 562 NATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIR 641 (1210)
T ss_dssp SSCCCCSTTCCCCCCSCHHHHHHHHHHHHTTTSSCTTCCCCCCTTTCCCCCCCSSCCBCCEEEECCCSSCSSSSCCCSSC
T ss_pred CceEEEECCEEEEEeCCHHHHHHHHHHHhhcCCCCCceEEEecCCCCeEEEecCCCcccceEEEEccCCccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred hhhHHHhhcC----------CCchhhhhccCceeeeccccccceEEEeecCCCC--------------------------
Q 001092 616 EHHMKELLDG----------VRSFDDFLREGLIEYLDVNEENNALIALYEGDAT-------------------------- 659 (1159)
Q Consensus 616 ~~~~~~~~~~----------~~~~~~l~~~g~iE~id~~E~~~~~Ia~~~~~~~-------------------------- 659 (1159)
++|+++|..+ ..+|++|+++|+|||||++||++++||++++|+.
T Consensus 642 k~hi~~L~~~~~~~~~~~~~~~~w~~Lv~~GvIEylDaeEEet~mIamtpeDL~~~r~~~~g~~~~~~~d~~~r~k~~~~ 721 (1210)
T 3h0g_B 642 KEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPN 721 (1210)
T ss_dssp HHHHHHHHHHHTCCCSCTTCCCSSTTTTTTTSEEECCTTTGGGCCEESCHHHHHHHHHHTTCCCCCCSSCCSSCCCCCSC
T ss_pred HHHHHHHhcccccccccccccCCHHHHHhCCCEEEecHhhhhceeEEecHHHhhhhhhhhccccccccccchhhccccCC
Confidence 9999988642 4789999999999999999999999999998862
Q ss_pred ---CcceeeeecCccccccccccccCCCCCCCCccccccccccCCccceeeeeccccccceeeecCCCcceeeeceeeee
Q 001092 660 ---PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736 (1159)
Q Consensus 660 ---~~~th~Ei~p~~ilsv~aslIPF~~hNqspRn~yq~~M~KQa~g~~~~n~~~R~D~~~y~l~ypQ~Plv~t~~~~~~ 736 (1159)
..||||||||++|||||||+||||||||||||||||||+|||||++++|+..|+||++|+|+|||+|||+|+.++.+
T Consensus 722 ~~~~~~THcEIhPsmILGIcASiIPFpdHNQSPRNtYQ~aMgKQamG~~~~n~~~R~Dt~~~~L~yPQkPlv~T~~~e~~ 801 (1210)
T 3h0g_B 722 PHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYL 801 (1210)
T ss_dssp CSCCSCSEECSCGGGSSCSSSTTSSSSTTSCSHHHHHHHHHHTTCCSCCCTTTTTSCCSSEEEESSCBCCSSBCTTSTTT
T ss_pred CcccccccccccchhhhhheeecccCccccccchhhhhhhhhcccccccccccccccCccccEeecCcCccccchhHHHh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcceEEEEEecCCCCCCCcEEeeccccccCceeEEEEEEEEEEeccccCCCcceecCCCCCCCCccccccccc
Q 001092 737 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHH 816 (1159)
Q Consensus 737 ~~~~~p~G~N~iVAv~~~~Gyn~EDaiiink~s~~rg~~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 816 (1159)
+++|+|+|+||+||||||+||||||||||||+|+|||||||+||++|+++++++..+..+.|..|+.+... ..+
T Consensus 802 ~~~elp~G~NaiVAvmsy~GYn~EDAiIink~sv~rg~~~s~~~~~y~~~~~~~~~~~~~~~~~p~~~~~~---~~~--- 875 (1210)
T 3h0g_B 802 KFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTL---RMK--- 875 (1210)
T ss_dssp TCTTSCSCCEECBEECCCSSSSCSSCEEEEHHHHTTTTTCEEEEEEEEECCCCCSSSCCCCCCCCCTTSCC---SCC---
T ss_pred CCCcccCccceEEEEeccCCCChhhheeeehhheecCceEEEEEEEEEEEeeecCCCceeEEcCCCcchhc---ccc---
Confidence 99999999999999999999999999999999999999999999999999988776667888888764321 122
Q ss_pred chhhhccCCCCcccCCCceeCCCCEEEEEecCCCCCCCCCCCCCCCCcccccceeeecCCCCCceEEEEEEEeeCCCCcE
Q 001092 817 SNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 896 (1159)
Q Consensus 817 ~~~~~~~Ld~dGi~~~g~~v~~gd~li~k~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~vd~v~~~~~~~~~~ 896 (1159)
...|++||+||||+||++|++|||||||++|+...+..+. ++.+...++|+|++++++| .|+||+|.++.+.+|.+
T Consensus 876 -~~~~~~LD~dGi~~~G~~v~~gDiligK~~p~~~~~~~~~-~~~~~~~~rd~s~~~~~~e--~g~Vd~V~~~~~~~g~~ 951 (1210)
T 3h0g_B 876 -HGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELG-QRTQLHAKRDVSTPLRSTE--SGIVDQVMVTTNQEGLK 951 (1210)
T ss_dssp -SCCGGGCCTTSSCCTTCCCCTTCCCCCCCCCC------------CCCCCCCCCCCCCTTC--CCCCCEEEEEECSSSSE
T ss_pred -hhhHhhcCCCCCcCCCCEecCCCEEEEEecCCCCCchhhc-ccccccccceeeEEecCCC--CeEEEEEEEEEecCCCe
Confidence 2479999999999999999999999999999875432221 2234556899999999999 99999999999999999
Q ss_pred EEEEEEeeecCCCcccccccccCCccEEEeeeccCCCCCCCCCCCCcEEeCCCCCCCCccHHHHHHHhcccccccCCcee
Q 001092 897 CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 976 (1159)
Q Consensus 897 ~vkv~~r~~R~p~iGDKf~sRhGqKGvvs~i~~~eDmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~g~~~ 976 (1159)
.|||++|+.|+|++|||||||||||||||+|||+||||||+||++|||||||||||||||||||+|+++||||++.|.+.
T Consensus 952 ~vkv~~~~~R~~~~GDK~a~RhGqKGvi~~i~~~edmPf~~~G~~pDii~NP~~~PSRMtigq~~E~~~g~~~~~~g~~~ 1031 (1210)
T 3h0g_B 952 FVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEG 1031 (1210)
T ss_dssp EEEEEECCCBCCCTTCEEECTTCCCEEEEEEECTTTSCCBTTTBCCSEECCGGGSTTSCCHHHHHHHHHHHHSSSSCCCC
T ss_pred EEEEEEEEecCCCchhhhhcccCCCceeeEEeccccCCcCCCCCCCeEEECCCcCCCCccchhhhHhHHHHHHHhcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCCcHHHHHHHHHHcCCCCCCceEEEeCCCCceeeeeEeEeeeeeeecccccCcccEEecccCccccccc
Q 001092 977 YGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQ 1056 (1159)
Q Consensus 977 ~~t~F~~~~~~~~~~~~~~~~l~~~g~~~~G~e~ly~G~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~Q 1056 (1159)
|+|||+ +..++++++.|.++||+++|+|+||||+||++|+++||+|++|||||+|||+||+||||+|||+.||||
T Consensus 1032 ~~tpF~-----~~~~~~~~~~l~~~g~~~~G~~~l~~g~tg~~~~~~i~~G~~yy~kL~Hmv~dK~h~r~~gp~~~~t~Q 1106 (1210)
T 3h0g_B 1032 DATPFT-----DVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQ 1106 (1210)
T ss_dssp BCCSSC-----SCCHHHHHHHHHTTTSCTTSCBCCBCSSSCCBCSSCBEECCEECEECSCCSTTTCEECSSCCBCSSSCS
T ss_pred eeccCC-----CCcHHHHHHHHHHcCcCCCCCEEEEcCCCCCCccccEEEEehHhhcchhhcccCcEEeccCCCchhccC
Confidence 999999 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCceeeeehhhhHHHHcccHHHHHHhhccCCCcccceeccccccceeecccccceecccccCCCccccccccH
Q 001092 1057 PTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPY 1136 (1159)
Q Consensus 1057 P~~Gr~~~GG~R~GEMErd~l~a~Gas~~L~erl~~~SD~~~~~vC~~cg~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy 1136 (1159)
|++||+|+|||||||||||||+|||||++|||||+.+||.+.++||..||++++.+...+..+|+.|+++.++.++.|||
T Consensus 1107 P~~gr~~~GG~r~GEME~~~l~a~Gaa~~l~e~l~~~SD~~~~~vC~~cg~~~~~~~~~~~~~c~~c~~~~~i~~~~~p~ 1186 (1210)
T 3h0g_B 1107 PVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPY 1186 (1210)
T ss_dssp BCCSSTTCCCCCCCHHHHHHHHHHTBHHHHHHHHHTTTTCCEEEEESSSCCBCCCCSSSCCCCCTTTCCSSCEEEEECCH
T ss_pred CcccccccCCeeeehhhhhhhhhccHHHHHHHHhhcCCCcceeEeecCCCCeeeecccCCceEcCccCCCCccceecCCH
Confidence 99999999999999999999999999999999999999999999999999998765556667899999999999999999
Q ss_pred hHHHHHHHHHhCCcccEEEecc
Q 001092 1137 ACKLLIQELQSMNIVPRLKLAE 1158 (1159)
Q Consensus 1137 ~~k~L~~EL~sm~i~~~l~~~~ 1158 (1159)
|||||+|||+||||.+||.+++
T Consensus 1187 ~~k~l~~El~~~~i~~rl~~~~ 1208 (1210)
T 3h0g_B 1187 AAKLLFQELMSMNIAPRLFTKN 1208 (1210)
T ss_dssp HHHHHHHHHHTTTCCEECCCST
T ss_pred HHHHHHHHHHhCCCceEEEecC
Confidence 9999999999999999999876
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=3e-291 Score=2757.48 Aligned_cols=1109 Identities=38% Similarity=0.639 Sum_probs=972.1
Q ss_pred CcccccccccccccccccchHHHHHHHHHHHHHhChHHHHhccCceeecCC-----------CcEEEEEeEEEEcCCccc
Q 001092 25 VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVRIGQPSMT 93 (1159)
Q Consensus 25 ~~~~~~~~~~i~~~~~~~~Lv~~qi~SFn~Fl~~gL~~i~~~~~~I~~~~~-----------~~~~l~f~~i~i~~P~~~ 93 (1159)
.++.+|+|.++++||+.++|++|||+|||||+++||+++++++++|+++.+ .++.|+|++++|++|++.
T Consensus 24 ~~~~~d~w~li~~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~~ 103 (1224)
T 1twf_B 24 PITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVN 103 (1224)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEEC
T ss_pred ccCHHHHHHhHHHHHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCcee
Confidence 358999999999999999999999999999999999999999999975322 148899999999999998
Q ss_pred cCC-cCCCCChhhHhhcCCccCccEEEEEE--EEECCccc-c-e-------e--eE--EeeEEEeecceeeccccccCCC
Q 001092 94 VDG-VSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTE-K-T-------T--ME--KNDVVIGRIPIMLRSCRCVLYG 157 (1159)
Q Consensus 94 ~~~-~~~~l~P~EcR~r~lTYsa~L~v~i~--~~~~~~~~-~-~-------~--i~--~~~v~lG~IPIMv~S~~C~L~~ 157 (1159)
+.+ ..+++||+|||+|++||+|||+|+|+ ++.++... . . + ++ +++|++|+|||||||++|||++
T Consensus 104 e~~~~~~~l~P~EcRlR~lTYsapl~v~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlrS~~C~L~~ 183 (1224)
T 1twf_B 104 ESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSE 183 (1224)
T ss_dssp CSSSCCEECCHHHHHHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTSTTSGGGT
T ss_pred ccCCccccCCHHHHhhcCCccceeEEEEEEEEEEeCCcccccccccccccccccccccceeeEeCCCCeEeccCcccCCC
Confidence 876 77899999999999999999999994 43222100 0 0 1 22 4579999999999999999999
Q ss_pred CCHHHHHhcCCCCCCCCcEEEEcCchhhhHhhhhccCCeEEEEeCCCCc---EEEEEEecCCCc----ceEEEEEee---
Q 001092 158 KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN---INASVTSSTETV----KSKTVIQME--- 227 (1159)
Q Consensus 158 ls~~eli~~~E~~~d~GGYFIING~ERVI~~q~~~s~N~i~~~~~~~g~---~~a~v~s~~~~~----~s~~~~~~~--- 227 (1159)
++++||+++||||+|+||||||||+|||||+||++++|+|++++++++. +.+.++|...+. .+..+.+.+
T Consensus 184 ~s~~el~~~gEcp~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~~~~~~~~~~~~~irsv~~~~~~~~~~~~l~~~~~~~ 263 (1224)
T 1twf_B 184 ATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREG 263 (1224)
T ss_dssp CCHHHHHHTTCCTTCCCCSEEETTEEEEECEEEEECSSCCEEEECCTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCSS
T ss_pred CCHHHHHhhccCccCCCCEEEEeCcEEEEEEeeeccCCeEEEEeccCCCcceEEEEEEEEeccCCcceeEEEEEEecccc
Confidence 9999999999999999999999999999999999999999998765433 677887754332 344445556
Q ss_pred --CCEEEEEEcceeccccHHHHHHHhcCCCHHHHHHHhC---CchhhHhhhhHhHHHHHhcCCcCHHHHHHHHhhh-ccc
Q 001092 228 --KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK-VKR 301 (1159)
Q Consensus 228 --~g~i~~r~~~~~~~IPl~ilLrALG~~sD~eI~~~i~---~~~~~~~~l~~~l~~~~~~~i~t~~~Al~yIg~r-~r~ 301 (1159)
+|.+|+++++++++||+++||||||++||+||++.|+ +++.+.+.+.++|+++. .++|+++||+|||++ +++
T Consensus 264 ~~~~~i~vr~~~~k~~IPi~illkALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~e~~--~~~t~~~AL~yIg~r~~~~ 341 (1224)
T 1twf_B 264 SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGF--VIQDRETALDFIGRRGTAL 341 (1224)
T ss_dssp CSSCCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHTT--TCCSHHHHHHHHHHTTSCT
T ss_pred CCCCEEEEEEecccccccHHHHHHHhcCCCHHHHHHHhcccCCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHHHhhccC
Confidence 7899999999878899999999999999999999996 77888999999998765 478999999999999 766
Q ss_pred CCCCCCCCChHHHHHHHHHhhhccCCCCCCCCCCCcchhHHHHHHHHHHhccCCCCCCCcccccCcEEcchhHHHHHHHH
Q 001092 302 STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFE 381 (1159)
Q Consensus 302 ~~~~~~~~~~~e~~~~~L~~~ll~Hl~~~~~~~~~K~~~L~~Mi~kLl~~~~g~~~~DD~D~l~NKRv~l~G~Ll~~lfr 381 (1159)
+ .+++. +++.|+++|++.||||++..+.+...|++||++|++||+.+..|.+.+||+|||+||||+++|+||++|||
T Consensus 342 g--~~~~~-~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G~Ll~~lfr 418 (1224)
T 1twf_B 342 G--IKKEK-RIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFK 418 (1224)
T ss_dssp T--SCHHH-HHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHHHHHHH
T ss_pred C--CCCcc-HHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhhHHHHHHHH
Confidence 4 23445 78999999999999999976545568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccchHHHHHHHhccCCCccc-ccccccccceEEccccccccccccc
Q 001092 382 DLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK-RFKMHRKGMTQVLARLSFIGTLGHM 460 (1159)
Q Consensus 382 ~~l~~~~~~ik~~i~k~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~~~-~~~~q~sGvsq~l~RlN~ls~Lshl 460 (1159)
++|++|++.+++.+.+.+++. ..+++..++++++||++|++|||||||+.+ .++++++||||+|+|+||+|+||||
T Consensus 419 ~~~~r~~~~i~~~l~~~~~~~---~~~~~~~~i~~~~It~~lk~~~aTGNw~~~k~~~~~~sGvSQvldr~n~ls~LSH~ 495 (1224)
T 1twf_B 419 TLFKKLTKDIFRYMQRTVEEA---HDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 495 (1224)
T ss_dssp HHHHHHHHHHHHHHHSCCC-----------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc---cccchhhhhcccchhhcchhheeeccccccccccccccceeEeecccchhhhhhhh
Confidence 999999999999998865432 357788888999999999999999999854 4567889999999999999999999
Q ss_pred cccccccccccccCCCCccCCCCCccccccCCCCCCcchhhhhcccceeeccCCCchhHHHHHhhcCCeeccccCccccC
Q 001092 461 TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELH 540 (1159)
Q Consensus 461 Rrv~s~f~~~~K~t~~R~Lhps~wG~iCPveTPEG~~cGLi~~LA~~a~Vt~~~~~~~i~~~l~~lG~~~l~~~~~~~~~ 540 (1159)
||+|+++++++|+++||+||||||||+||+|||||+|||||||||++|+|+++.++++|.++|.++||.+++..++...
T Consensus 496 RRi~~~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~pi~~~l~~~G~~~l~e~~~~~~- 574 (1224)
T 1twf_B 496 RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQS- 574 (1224)
T ss_dssp TEEECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEGGGCCGGGC-
T ss_pred hcccccccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHHHHHHHHHHcCCcceeecccccC-
Confidence 9999999999999999999999999999999999999999999999999999988999999999999999887665443
Q ss_pred CCCcEEEEEcCeEEEeecChhhHHHHHHHHhhcCCCCceeEEEecccCceEEEecCCCeeeeeEEEEecC------cccc
Q 001092 541 NPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG------ISRI 614 (1159)
Q Consensus 541 ~~~~~~V~lnG~~iG~~~~~~~~~~~lr~~Rr~~~i~~~vsi~~~~~~~~i~I~td~GRl~RPl~~v~~~------~~~~ 614 (1159)
+..++|||||+|||++.+|..+++.||.+||.|.|+.+||++++...++++||||+||++|||++|+|+ ++.+
T Consensus 575 -~~~~kVfvnG~~vG~~~~p~~lv~~lr~lRR~g~i~~evsiv~d~r~~ei~I~TD~GRv~RPl~vV~~~~~~~~~~l~l 653 (1224)
T 1twf_B 575 -PDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKV 653 (1224)
T ss_dssp -TTCEEEEETTEEEEEESCHHHHHHHHHHHHHHTSSCTTCEEEEETTTTEEEEECCSCCEEEEEEEEECCCTTSSCEESC
T ss_pred -CCceEEEECCEEEEEeCCHHHHHHHHHHHHhccCCCCeEEEEEecccCeEEEeccCceeeeeEEEecCCCcccccccee
Confidence 257999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred hhhhHHHhhcC-------------CCchhhhhccCceeeeccccccceEEEeecCCCCC---------------------
Q 001092 615 KEHHMKELLDG-------------VRSFDDFLREGLIEYLDVNEENNALIALYEGDATP--------------------- 660 (1159)
Q Consensus 615 ~~~~~~~~~~~-------------~~~~~~l~~~g~iE~id~~E~~~~~Ia~~~~~~~~--------------------- 660 (1159)
+++|++++..+ ..+|++|++.|.|||||++||++++||++++++..
T Consensus 654 ~k~hi~~L~~~~~~~~~~~~~~~~~~~w~~Lv~~G~iEyldaeEEe~~~Ia~~~~dl~~~~~~~~~~~~~~~~~R~~~~~ 733 (1224)
T 1twf_B 654 RKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSH 733 (1224)
T ss_dssp CHHHHHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGGCC---------CCCTTSCCCCCC
T ss_pred cHHHHHHhhhccccccccccccccccchhHhccCCcEEEcChhhhcCcEEeccccccCcccccccccccccccccccCCc
Confidence 99999988643 27999999999999999999999999999988755
Q ss_pred ---cceeeeecCccccccccccccCCCCCCCCccccccccccCCccceeeeeccccccceeeecCCCcceeeeceeeeec
Q 001092 661 ---DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737 (1159)
Q Consensus 661 ---~~th~Ei~p~~ilsv~aslIPF~~hNqspRn~yq~~M~KQa~g~~~~n~~~R~D~~~y~l~ypQ~Plv~t~~~~~~~ 737 (1159)
.||||||||++||||+||+||||||||||||||||||||||||++.+|+..|+|++.|+|+|||+|||+|+.++.++
T Consensus 734 ~~~~~Th~EI~Ps~ILgV~ASlIPF~dHNqSpRn~yqs~M~kQA~g~~~~n~~~r~dt~~~~l~ypQkPlV~t~~~~~~~ 813 (1224)
T 1twf_B 734 HATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLK 813 (1224)
T ss_dssp CCSCCCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHHHGGGBCBCSCTTTTTCCCSEEEEESSCBCCSEECTTHHHHT
T ss_pred CchhhcccccCCccccceeecccCCccccccchhhhcccccccccccccceeeeecccccceeecCcCCeEEcccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEecCCCCCCCcEEeeccccccCceeEEEEEEEEEEeccccCCCcceecCCCCCCCCcccccccccc
Q 001092 738 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQVVHHS 817 (1159)
Q Consensus 738 ~~~~p~G~N~iVAv~~~~Gyn~EDaiiink~s~~rg~~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 817 (1159)
++|+|+|+||+||||||+||||||||||||+|+|||+|||+||++|++++++++.|..|.|..|+.++.. +++
T Consensus 814 ~~elp~G~N~iVAvm~y~GYN~EDAiIin~~sv~rg~~~s~~~~~y~~~~~~~~~~~~e~~~~P~~~~~~---~~~---- 886 (1224)
T 1twf_B 814 FRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTL---RMK---- 886 (1224)
T ss_dssp TTTSCCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSC---BCC----
T ss_pred cccCCCCeeEEEEEecccCcccchhhhhhhhHHhcCCeeEEEEEEEEEEeeeCCCCceeEecCCChhhcc---Ccc----
Confidence 9999999999999999999999999999999999999999999999999988766778889888753211 222
Q ss_pred hhhhccCCCCcccCCCceeCCCCEEEEEecCCCCCCCCCCCCCCCCcccccceeeecCCCCCceEEEEEEEeeCCCCcEE
Q 001092 818 NLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 897 (1159)
Q Consensus 818 ~~~~~~Ld~dGi~~~g~~v~~gd~li~k~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~vd~v~~~~~~~~~~~ 897 (1159)
...|++||+||||++|++|++|||||||++|+...+..+. .+.+...++|+|++++++| .|+||+|.++.+.+|.+.
T Consensus 887 ~~~~~~LD~dGiv~~G~~V~~gDilvgK~~p~~~~~~~~~-~~~~~~~~rd~s~~~~~~e--~g~Vd~V~~~~~~~g~~~ 963 (1224)
T 1twf_B 887 HGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELG-QRTAYHSKRDASTPLRSTE--NGIVDQVLVTTNQDGLKF 963 (1224)
T ss_dssp SSCGGGCCTTSBCCTTCEECTTCEEECEECCCC--------------CCBBCCEECCTTC--CEEEEEEEEEECSSSCEE
T ss_pred HHHHhhcccCCccCCccEecCCCEEEEEecCCCccccccc-cccccCccceeEEEeeCCC--CeEEEEEEEEecCCCCEE
Confidence 2579999999999999999999999999999875432221 1334467899999999999 999999999999999999
Q ss_pred EEEEEeeecCCCcccccccccCCccEEEeeeccCCCCCCCCCCCCcEEeCCCCCCCCccHHHHHHHhcccccccCCceee
Q 001092 898 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 977 (1159)
Q Consensus 898 vkv~~r~~R~p~iGDKf~sRhGqKGvvs~i~~~eDmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~g~~~~ 977 (1159)
|||++|++|+|+||||||||||||||||+|||+||||||+||++|||||||||||||||||||+||++||||++.|.+.|
T Consensus 964 vkV~ir~~R~p~iGDKfasRHGqKGvis~i~p~eDMPf~~dG~~pDiIiNPhg~PSRMtiGqllE~~lgka~~~~G~~~d 1043 (1224)
T 1twf_B 964 VKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGD 1043 (1224)
T ss_dssp EEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEE
T ss_pred EEEEEEecCCCCchhhhhhhccCcceeeeecccccCCcCCCCCCccEEeCCCcCccccccchhHHHHhhHHHHhcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCCcHHHHHHHHHHcCCCCCCceEEEeCCCCceeeeeEeEeeeeeeecccccCcccEEecccCcccccccC
Q 001092 978 GSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQP 1057 (1159)
Q Consensus 978 ~t~F~~~~~~~~~~~~~~~~l~~~g~~~~G~e~ly~G~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP 1057 (1159)
||||+ +.+++++++.|+++||+++|+|+||||+||++|+++||+||+|||||+|||+|||||||+|||++|||||
T Consensus 1044 atpF~-----~~~~~~i~~~L~~~g~~~~G~e~ly~G~TG~~~~~~i~vG~~YyqkL~HmV~DKihaRs~GP~~~lT~QP 1118 (1224)
T 1twf_B 1044 ASPFT-----DITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQP 1118 (1224)
T ss_dssp CCSSS-----SCCHHHHHHHHHTTTSCTTSEECEECTTTCCBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC--------
T ss_pred cCCCC-----CccHHHHHHHHHHcCCCCCCCEEeecCCCCCCccceEEEehhHhhcchhhcccCceEEeeCCCcccccCC
Confidence 99999 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceeeeehhhhHHHHcccHHHHHHhhccCCCcccceeccccccc-eeecccccceecccccCCCccccccccH
Q 001092 1058 TEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLL-GYYNHKLKAGICSTCKNGDNISSMKLPY 1136 (1159)
Q Consensus 1058 ~~Gr~~~GG~R~GEMErd~l~a~Gas~~L~erl~~~SD~~~~~vC~~cg~~-~~~~~~~~~~~C~~c~~~~~~~~v~iPy 1136 (1159)
++||||+|||||||||||||+|||||++|||||+.+||++.++||..||++ ++.+..++.++|+.|+++.++.++.|||
T Consensus 1119 ~~Gr~r~GG~RfGEMErd~L~a~Gaa~~L~ErL~~~SD~~~~~vC~~cG~~~~~~~~~~~~~~c~~c~~~~~i~~~~iPy 1198 (1224)
T 1twf_B 1119 VEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPY 1198 (1224)
T ss_dssp --------CCCCCHHHHHHHHHHTCHHHHHHHHCCSSCCCEEEEESSSCSSCCEEETTTTEEEBTTTTBSSSEEEEECCH
T ss_pred CcccccCCceecchhhhhhHHhccHHHHHHHHHhcCCccceeEeeccCCCeeeecccccCceECCcCCCCCccccccCCH
Confidence 999999999999999999999999999999999999999999999999999 7765555567799999889999999999
Q ss_pred hHHHHHHHHHhCCcccEEEecc
Q 001092 1137 ACKLLIQELQSMNIVPRLKLAE 1158 (1159)
Q Consensus 1137 ~~k~L~~EL~sm~i~~~l~~~~ 1158 (1159)
|||||+|||+||||++||.+++
T Consensus 1199 sfklL~~EL~sm~i~~~l~~~~ 1220 (1224)
T 1twf_B 1199 AAKLLFQELMAMNITPRLYTDR 1220 (1224)
T ss_dssp HHHHHHHHHHHTTBCCEEESCS
T ss_pred hHHHHHHHHHHCCCeeEEEecc
Confidence 9999999999999999999875
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=1.2e-269 Score=2577.45 Aligned_cols=1101 Identities=37% Similarity=0.635 Sum_probs=1007.7
Q ss_pred CCcccccccccccccccccchHHHHHHHHHHHHHhChHHHHhccCceeecCCCcEEEEEeEEEEcCCccccCC-cCCCCC
Q 001092 24 PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG-VSEKLN 102 (1159)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~~~Lv~~qi~SFn~Fl~~gL~~i~~~~~~I~~~~~~~~~l~f~~i~i~~P~~~~~~-~~~~l~ 102 (1159)
..++.+|+|.+|++||+.++||+|||||||||+++||++++++++||+.. .+++.|+|++++|++|++.+.+ ..+++|
T Consensus 6 ~~~~~~d~w~~i~~~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~-~~~~~l~f~~~~l~~P~~~e~d~~~~~l~ 84 (1131)
T 4ayb_B 6 SNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTE-IPGLKVRLGKIRIGKPRVRESDRGEREIS 84 (1131)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCS-STTCEEEEEEEEECCSEEEETTTEEEECC
T ss_pred ccCChhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeec-CCCEEEEEEEEEEeCCeeecCCCCcCccC
Confidence 67789999999999999999999999999999999999999999999754 4679999999999999998877 678899
Q ss_pred hhhHhhcCCccCccEEEEEEEEECCcccceeeEEeeEEEeecceeeccccccCCCCCHHHHHhcCCCCCCCCcEEEEcCc
Q 001092 103 PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182 (1159)
Q Consensus 103 P~EcR~r~lTYsa~L~v~i~~~~~~~~~~~~i~~~~v~lG~IPIMv~S~~C~L~~ls~~eli~~~E~~~d~GGYFIING~ 182 (1159)
|+|||+|++||+|||+|++.+..++ .++++++|++|+|||||+|++|||++++++||++.||||+|+||||||||+
T Consensus 85 P~EcR~r~~TYsapl~v~v~~~~~~----~~~~~~~v~lG~iPiM~~S~~C~L~~~s~~el~~~gEc~~D~GGyFIING~ 160 (1131)
T 4ayb_B 85 PMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGS 160 (1131)
T ss_dssp HHHHHHHTCCCEEEEEEEEEEEETT----EECCCEEEEEEEEECCTTSTTSGGGGCCHHHHHHHTCCTTCCCCCEEETTE
T ss_pred HHHHHhcCCCccceEEEEEEEEECC----cEEEEEEEEEEECCEEeCCCcccCCCCCHHHHHhcCCCcCCCCcEEEeCCE
Confidence 9999999999999999999998876 566778999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhccCCeEEEEeCCCC-c--EEEEEEecCCCcc-eEEEEEeeCCEEEEEEcceeccccHHHHHHHhcCCCHHH
Q 001092 183 EKVLLIQEQLSKNRVIIDTDKKG-N--INASVTSSTETVK-SKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258 (1159)
Q Consensus 183 ERVI~~q~~~s~N~i~~~~~~~g-~--~~a~v~s~~~~~~-s~~~~~~~~g~i~~r~~~~~~~IPl~ilLrALG~~sD~e 258 (1159)
|||||+|++++||.+++++++.+ . +.|.++|+++.++ +.++...++|.+++++++.+++||+++||||||+.||+|
T Consensus 161 ERVIv~Q~~~spn~~~~~~~~~~~~~~~~a~ii~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~iPi~illrALG~~sD~e 240 (1131)
T 4ayb_B 161 ERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRD 240 (1131)
T ss_dssp EEEECEEEEECCSSCEEEECCTTCSEEEEEECEEECSSCEEECCEEEETTTCCEECCSSSCCCEEHHHHHHHHTCCSHHH
T ss_pred EEEEEEeeccCCCeEEEEeccCCCcEEEEEEEEECCCCceeeEEEEEeCCCEEEEEEcCcCceeeHHHHHHHhCCcchhh
Confidence 99999999999999888765443 3 5688888876432 344555688999999999877899999999999999999
Q ss_pred HHHHhCCchhhHhhhhHhHHHHHhcCCcCHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHhhhccCCCCCCCCCCCcc
Q 001092 259 VVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338 (1159)
Q Consensus 259 I~~~i~~~~~~~~~l~~~l~~~~~~~i~t~~~Al~yIg~r~r~~~~~~~~~~~~e~~~~~L~~~ll~Hl~~~~~~~~~K~ 338 (1159)
|++.++.++++.+.+..+++++ ..+.|+++||.||+++++.. .+..+ ..+.|+++|++++|||++....++..|+
T Consensus 241 I~~~i~~~~~~~~~l~~~~~~~--~~i~~~~~al~~i~~r~~~~--~~~~~-~~~~a~~il~~~~l~hl~~~~~~~~~K~ 315 (1131)
T 4ayb_B 241 IVYAVSLDPEIQNELFPSLEQA--SSIANVDDALDFIGSRVAIG--QKREN-RIEKAQQIIDKYFLPHLGTSADDRRKKA 315 (1131)
T ss_dssp HHHHHCSCHHHHTTTHHHHHHH--TTTCCSSHHHHHHHHHHHCS--SCHHH-HHHHHHHHHHTTSSTTSCSSTTSHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHh--cccccHHHHHHHHhhhhhcC--CCCch-hHHHHHHHHHHhhcccccccccchhHHH
Confidence 9999987777777777777765 46889999999999999876 22334 6789999999999999998877778899
Q ss_pred hhHHHHHHHHHHhccCCCCCCCcccccCcEEcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccc
Q 001092 339 FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418 (1159)
Q Consensus 339 ~~L~~Mi~kLl~~~~g~~~~DD~D~l~NKRv~l~G~Ll~~lfr~~l~~~~~~ik~~i~k~~~~~~~~~~~~~~~~i~~~~ 418 (1159)
.+|++|++||+.+..|.+.+||+|||+||||+++|+||++|||.+|.+|++.+++++.+...+. ..+++..+++++.
T Consensus 316 ~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~~~fr~~l~r~~r~ir~~~~~~~~~~---~~~~~~~li~~~~ 392 (1131)
T 4ayb_B 316 YYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRG---RKLALKALVRPDI 392 (1131)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC---SCCCHHHHCCTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHHHHHHHHHHHHHHHhhhhcccchhcc---cccchhhhcCCch
Confidence 9999999999999999999999999999999999999999999999999999999998874432 3467778889999
Q ss_pred hHHHHHHHhccCCCcccccccccccceEEccccccccccccccccccccccccccCCCCccCCCCCccccccCCCCCCcc
Q 001092 419 ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498 (1159)
Q Consensus 419 It~~i~~~~sTGnw~~~~~~~q~sGvsq~l~RlN~ls~LshlRrv~s~f~~~~K~t~~R~Lhps~wG~iCPveTPEG~~c 498 (1159)
||++|++|||||||. .+++|+||+|||+||+|+|||+||+++++++++|.++||+|||||||||||||||||+||
T Consensus 393 it~~i~~~~aTGn~~-----~~~sglSQ~mdq~NpLs~lsH~RRlsagl~rera~~evRdlHpShyGriCPIETPEG~ni 467 (1131)
T 4ayb_B 393 VTERIRHALATGNWV-----GGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNS 467 (1131)
T ss_dssp HHHHHHHHHHTTBCS-----SSCBCCEEECCCSSHHHHHHHHTEEEECSCSSSCCHHHHSCCGGGTTTBCSSCCCSSTTB
T ss_pred hhhhhHHHHhhcccc-----cCCCceEEEeccCCHHHHHHhhhhhcCCcccccccccccccCHhhccccccccCCCCccc
Confidence 999999999999996 367999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccceeeccCCCchhHHHHHhhcCCeeccc----cCcccc---CCCCcEEEEEcCeEEEeecChhhHHHHHHHHh
Q 001092 499 GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL----LSGEEL---HNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571 (1159)
Q Consensus 499 GLi~~LA~~a~Vt~~~~~~~i~~~l~~lG~~~l~~----~~~~~~---~~~~~~~V~lnG~~iG~~~~~~~~~~~lr~~R 571 (1159)
|||||||++|+|+.+.++.++++++.++|+.+++. ++.... .......||+||+|+|++.++..++..+|..|
T Consensus 468 GLI~sLA~~a~I~~g~~e~~i~~~l~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~v~lng~~vg~~~~~~~~~~~~~~~~ 547 (1131)
T 4ayb_B 468 GLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERR 547 (1131)
T ss_dssp TTEEEBBSSCEECCCCCHHHHHHHHHHTTCEEHHHHHHTTTTC-----CCCCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred cccccceeeEEEecCCCCcceeeehhhcCceeeeeeehhhcccccccchhhhhcceeecCceEEEeccchhhhhhhhhhh
Confidence 99999999999999899999999999999987652 221110 11134579999999999999999999999999
Q ss_pred hcCCCCceeEEEec--ccCceEEEecCCCeeeeeEEEEecCcccchhhhHHHhhcCCCchhhhhccCceeeeccccccce
Q 001092 572 RAGKIGEFVSVFVN--EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNA 649 (1159)
Q Consensus 572 r~~~i~~~vsi~~~--~~~~~i~I~td~GRl~RPl~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~iE~id~~E~~~~ 649 (1159)
+.+.++.++|+.+. ...+.++|++|+||++|||++++++++.++.++++.+..+...|.++++.|.|||+|++|++++
T Consensus 548 ~~~~i~~~vsi~~~~~~~~~~~~i~~d~~r~~rpv~~~~~~~p~v~~~~~~~~~~g~~~~~~~~~~g~veyvd~~e~~~~ 627 (1131)
T 4ayb_B 548 RKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENA 627 (1131)
T ss_dssp HHTSSCTTCEEEEECTTTCCEEEEECCTTCEEEEEEEBSSSSBSCCHHHHHHHHTTTCCHHHHHHTTSEEEEEHHHHTTC
T ss_pred ccCccCceEEEeeccccccceeeeecCCcccccceEEeecccccccHHHHHHHhcCChhHHHHhhCCceeeeecccccee
Confidence 99999999998654 3458999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCcceeeeecCccccccccccccCCCCCCCCccccccccccCCccceeeeeccccccceeeecCCCcceee
Q 001092 650 LIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729 (1159)
Q Consensus 650 ~Ia~~~~~~~~~~th~Ei~p~~ilsv~aslIPF~~hNqspRn~yq~~M~KQa~g~~~~n~~~R~D~~~y~l~ypQ~Plv~ 729 (1159)
+||+.++++...+||+||+|+.++|++|++|||++|||||||+|||||+|||||++.+|+..|+|++.|+|+|||+|||+
T Consensus 628 ~ia~~~~~~~~~~th~ei~p~~il~v~a~lipf~~~NqspRn~yq~~m~KQa~G~~~~~~~~r~D~~~~~l~ypQ~PlV~ 707 (1131)
T 4ayb_B 628 YVALEPSDLTPEHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQ 707 (1131)
T ss_dssp CEESSGGGCCTTCSEECSCGGGGSBTTGGGCSSGGGSCHHHHHHHHHHGGGBCSCCCGGGGTCCCSEEEEESSCCCCSSB
T ss_pred EEEeecccccccccceeeccccccccccceecccccCccchheeccccccccCCceeecceeeeccccceeecCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceeeeecCCCCCCCcceEEEEEecCCCCCCCcEEeeccccccCceeEEEEEEEEEEeccccCCCcceecCCCCCCCCcc
Q 001092 730 TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAE 809 (1159)
Q Consensus 730 t~~~~~~~~~~~p~G~N~iVAv~~~~Gyn~EDaiiink~s~~rg~~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 809 (1159)
|+.++.++++++|+|+||+||||||+||||||||||||++++||+|||+||++|++++++++.|.+|.++.|......
T Consensus 708 t~~~~~~~~~e~p~G~N~lVA~m~w~GYN~EDAIIine~~v~rg~ftSihi~~y~~e~r~~~~g~~e~it~~~p~v~~-- 785 (1131)
T 4ayb_B 708 TRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRG-- 785 (1131)
T ss_dssp CHHHHHHTCTTSCCSEEEEEEECCCSSCCCTTCEEEEHHHHTTTTTCEEEEEEEEEECCCCTTSCCCCCCCCCSSCSS--
T ss_pred cchhhhhccCCCCCceeEEEEEEccCCccHHHhhhhhcchhhcccceeeEEEEEEEEEEecCCCCceEEecCCccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999988877764332111
Q ss_pred cccccccchhhhccCCCCcccCCCceeCCCCEEEEEecCCCCCCCCCCCCCCCCcccccceeeecCCCCCceEEEEEEEe
Q 001092 810 RMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 889 (1159)
Q Consensus 810 ~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gd~li~k~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~vd~v~~~ 889 (1159)
+.+...+++||+||||++|++|++|||||||++|+...+.....++ ....+|+|+++++++ .|+||.|.++
T Consensus 786 -----~~~~~~~~~LDe~Gii~iGa~V~~gDilvGKvtP~~~~~~~~~~~~--~~~~~d~sl~~~~g~--~g~Vd~v~~~ 856 (1131)
T 4ayb_B 786 -----YKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSP--EQAKRDTSIVTRHGE--MGIVDLVLIT 856 (1131)
T ss_dssp -----CCCGGGGTTCCTTSBCCTTCEECTTCEEECCCCCCC-------------CCCCCCCEECCTTC--CEEEEEEEEE
T ss_pred -----cchHHHhhcCCccccccCCcEecCCCEEEEEecCCcchhhhhhcCc--ceeeeeeeEEccCCC--ceEEEEEEEe
Confidence 1124689999999999999999999999999999865432111111 223589999999998 9999999999
Q ss_pred eCCCCcEEEEEEEeeecCCCcccccccccCCccEEEeeeccCCCCCCCCCCCCcEEeCCCCCCCCccHHHHHHHhccccc
Q 001092 890 SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 969 (1159)
Q Consensus 890 ~~~~~~~~vkv~~r~~R~p~iGDKf~sRhGqKGvvs~i~~~eDmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~ 969 (1159)
.+.++++.|||++|+.|+|+||||||||||||||||+|||+|||||++||++|||||||||||||||||||+|+++||||
T Consensus 857 ~~~~~~~~vkV~i~~~R~~~vGDK~agRHGnKGvvs~i~p~eDMPf~~dG~~~DiilNP~gvPSRMniGqilE~~~gk~~ 936 (1131)
T 4ayb_B 857 ETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYA 936 (1131)
T ss_dssp ECSSSCEEEEEEEEEEECCCTTCEEEETTSCEEEEEEEECTTTSEEETTSCCCSEECCTTSSTTTTCHHHHHHHHHHHHH
T ss_pred eccCCceEEEEEEeccccCcccccccccccccceeeeecccccCCcCCCCCCccEEECCCCCcccCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeeeeccCCCCCCCcHHHHHHHHHHcCCCCCCceEEEeCCCCceeeeeEeEeeeeeeecccccCcccEEecccC
Q 001092 970 VSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1049 (1159)
Q Consensus 970 ~~~g~~~~~t~F~~~~~~~~~~~~~~~~l~~~g~~~~G~e~ly~G~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp 1049 (1159)
++.|.+.|||||. ...++++.+.|.++||+++|+|+||||+||++|+++||+|++|||||+|||+||||||||||
T Consensus 937 ~~~g~~~~atpf~-----~~~~e~~~~~l~~~g~~~~g~~~lydG~TGe~~~~~i~vG~~Yy~kL~HmV~DKihaRs~GP 1011 (1131)
T 4ayb_B 937 ALSGNIVDATPFY-----KTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGP 1011 (1131)
T ss_dssp HHHCCCCBCCTTS-----SCCTHHHHHHHHHTTSCTTSEECEEETTTCCBCSSCEEEEEEEEEEBSCCHHHHCEEESSCC
T ss_pred HhCCCceecCccC-----CCcHHHHHHHHHHcCCCCCCCEEEeCCCCCCEecCcEEEEhhhhhccchhhccCCEeeccCC
Confidence 9999999999998 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccCCceeeeehhhhHHHHcccHHHHHHhhccCCCcccceeccccccceeecccccceecccccCCCcc
Q 001092 1050 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNI 1129 (1159)
Q Consensus 1050 ~~~lT~QP~~Gr~~~GG~R~GEMErd~l~a~Gas~~L~erl~~~SD~~~~~vC~~cg~~~~~~~~~~~~~C~~c~~~~~~ 1129 (1159)
|++|||||++||||+|||||||||||||+|||||++||||||.|||++.++||..||++++.+...+..+|+.|+++.++
T Consensus 1012 ~s~~TqQPl~Gra~~GG~RfGEME~~aL~a~Gaa~~LqE~L~~~SD~~~~~vc~~cG~~~~~~~~~~~~~c~~~~~~~~i 1091 (1131)
T 4ayb_B 1012 VQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNL 1091 (1131)
T ss_dssp BCTTTCCBCSSGGGTCCCEECHHHHHHHHHHTCHHHHHHHTTTTTCEEEEEECSSSCCBCEEETTTTEEECSSCSSSSCC
T ss_pred CCCcccCCCCCcccCCCcceeHHHHHHHHHHhHHHHHHHHhhccCCccceeeccCCCceEEEeccCCceeCCccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999887666677789999999999
Q ss_pred ccccccHhHHHHHHHHHhCCcccEEEecc
Q 001092 1130 SSMKLPYACKLLIQELQSMNIVPRLKLAE 1158 (1159)
Q Consensus 1130 ~~v~iPy~~k~L~~EL~sm~i~~~l~~~~ 1158 (1159)
.++.||||||||+|||+||||++||.++|
T Consensus 1092 ~~~~iP~sfk~L~~EL~sm~i~~~l~~~d 1120 (1131)
T 4ayb_B 1092 FPVTVSYAFKLLIQELMSMIISPRLILED 1120 (1131)
T ss_dssp EEEEEEHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHCCcceEEEecc
Confidence 99999999999999999999999999876
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=7.4e-231 Score=2153.18 Aligned_cols=942 Identities=24% Similarity=0.400 Sum_probs=797.7
Q ss_pred cccccccccccccccchHHHHHHHHHHHH----------HhChHHHHhccCceeec--CCCcEEEEEeEEEEcCCccccC
Q 001092 28 VVDKFQLLPEFLKVRGLVKQHLDSFNYFV----------NTGIRKIVRANDRIVSG--IDPSIFLRFKDVRIGQPSMTVD 95 (1159)
Q Consensus 28 ~~~~~~~i~~~~~~~~Lv~~qi~SFn~Fl----------~~gL~~i~~~~~~I~~~--~~~~~~l~f~~i~i~~P~~~~~ 95 (1159)
.+.+|+.++++|+.++|+++|++|||||+ ++||++++++++||+.+ .++++.|+|.+++|++|++
T Consensus 2 ~r~~~~~~~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~~~~~~~~l~f~~~~l~~P~~--- 78 (1119)
T 2a6h_C 2 EIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPF--- 78 (1119)
T ss_dssp EEEECCCCCCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECCSSSCCEEEEECCCCBCCCSS---
T ss_pred cceecccccccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccCCCCCeEEEEEEEEEEcCCCC---
Confidence 35789999999999999999999999999 99999999999999864 4578999999999999986
Q ss_pred CcCCCCChhhHhhcCCccCccEEEEEEEEECCcccceeeEEeeEEEeecceeeccccccCCCCCHHHHHhcCCCCCCCCc
Q 001092 96 GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175 (1159)
Q Consensus 96 ~~~~~l~P~EcR~r~lTYsa~L~v~i~~~~~~~~~~~~i~~~~v~lG~IPIMv~S~~C~L~~ls~~eli~~~E~~~d~GG 175 (1159)
+|+|||+|++||+|||+|+++++.++. +++++++|++|+||||+ +||
T Consensus 79 ------~p~Ecr~r~lTYsapL~V~v~l~~~~~---~~ik~~~V~iG~iPiMt------------------------~gG 125 (1119)
T 2a6h_C 79 ------PQDECREKDLTYQAPLYARLQLIHKDT---GLIKEDEVFLGHIPLMT------------------------EDG 125 (1119)
T ss_dssp ------CHHHHHHTTCCCEEEBCCCEEECCSSS---CCEECCCCCCCEEECCC------------------------TTS
T ss_pred ------CHHHHHhcCCcccceEEEEEEEEECCC---ceeeeeEEEecCCCeEC------------------------CCc
Confidence 799999999999999999999986542 45566789999999999 799
Q ss_pred EEEEcCchhhhHhhhhccCCeEEEEe-CCCCc--EEEEEEecCCCcceEEEEEeeCCEEEEEEcceeccccHHHHHHHhc
Q 001092 176 YFIIKGTEKVLLIQEQLSKNRVIIDT-DKKGN--INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252 (1159)
Q Consensus 176 YFIING~ERVI~~q~~~s~N~i~~~~-~~~g~--~~a~v~s~~~~~~s~~~~~~~~g~i~~r~~~~~~~IPl~ilLrALG 252 (1159)
||||||+||||++|++++||.++... ++.|. +.+.+++.+. .|..+...+++.+|+++++ ++||+++||||||
T Consensus 126 yFIING~ERVIVsQ~~rspgv~~~~~~~~~g~~~ysa~ii~~rg--s~l~~~~d~~~~i~vri~r--~kIPi~ilLrALG 201 (1119)
T 2a6h_C 126 SFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRG--PWIDLEVEPNGVVSMKVNK--RKFPLVLLLRVLG 201 (1119)
T ss_dssp CCCSSSSCEEECEEEEECSCEEEECCSSCSSCCEEEECCCSSSS--CCEEEEEETTTEEEEESSS--SEECHHHHHHHHT
T ss_pred EEEEeCeEEEEEEEEecCCcEEEEeeccCCCceEEEEEEEeccC--ceEEEEEcCCCEEEEEEeC--cceeHHHHHHHHC
Confidence 99999999999999999999555433 23453 6677776543 4555555688999999999 6899999999999
Q ss_pred CCCHHHHHHHhCCchhhHhhhhHhHHHHHhcCCcCHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHhhh-------cc
Q 001092 253 MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF-------LA 325 (1159)
Q Consensus 253 ~~sD~eI~~~i~~~~~~~~~l~~~l~~~~~~~i~t~~~Al~yIg~r~r~~~~~~~~~~~~e~~~~~L~~~l-------l~ 325 (1159)
+ ||+||++.|+.++.+.+.+.... ..+.++++||.||+++++++ ... ..+.|+++|.+.| |+
T Consensus 202 ~-sD~eIl~~~~~~~~~~~tl~~d~-----~~~~~~~eAl~~i~~~lr~g----~~~-~~e~a~~~l~~~ff~~~rydl~ 270 (1119)
T 2a6h_C 202 Y-DQETLARELGAYGELVQGLMDES-----VFAMRPEEALIRLFTLLRPG----DPP-KRDKAVAYVYGLIADPRRYDLG 270 (1119)
T ss_dssp C-CHHHHHHHHHSSCTTHHHHSSCH-----HHHTCHHHHHHHHHHHSSSC----CCS-CCSSHHHHHTSSSSSSCCSCTT
T ss_pred C-CHHHHHHHHccCHHHHHHHHhhh-----cccCCHHHHHHHHHHHhcCC----CCC-cHHHHHHHHHHhhCCcccccch
Confidence 9 99999999976555544443210 02458999999999999986 233 5577999999988 57
Q ss_pred CCCCCCCCC-----------------CCcchhHHHHHHHHHHhccCCC--CCCCcccccCcEEcchhHHHHHHHHHHHHH
Q 001092 326 NVPVHNNNF-----------------RPKCFYVAVMLRRMVEAMLNKD--AMDDKDYVGNKRLELSGQLVSLLFEDLFKT 386 (1159)
Q Consensus 326 Hl~~~~~~~-----------------~~K~~~L~~Mi~kLl~~~~g~~--~~DD~D~l~NKRv~l~G~Ll~~lfr~~l~~ 386 (1159)
|+|....+. .-+...+++|++||+.+..|.+ .+||+|||+||||+++|+||+++||.+|.+
T Consensus 271 ~vGr~~ln~kl~l~~~~~~~~~~~~~~l~~~di~~mi~~Ll~l~~G~~~~~~DD~DhlgNkRv~~~GeLl~~~fr~~l~r 350 (1119)
T 2a6h_C 271 EAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLAR 350 (1119)
T ss_dssp TSSHHHHHTTSCSCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHHTSCSSCCCCCTTSTTTEEEECHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhccCCccccccccccccccHHHHHHHHHHHHHhhcCCCCCCCcCcchhhceEehhhhHHHHHHHHHHHHH
Confidence 776321100 0111336789999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccccccccchHHHHHHHhccCCCcccccccccccceEEcccccccccccccccccc-
Q 001092 387 MISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP- 465 (1159)
Q Consensus 387 ~~~~ik~~i~k~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~~~~~~~q~sGvsq~l~RlN~ls~LshlRrv~s- 465 (1159)
+.+.+++++.+. ....+++..+++++.||++|++||+||| |||+|+|+||+|+|||+||+++
T Consensus 351 ~~~~i~~~~~~~-----~~~~~~~~~~i~~~~It~~lk~ff~tg~------------lSQ~Ldq~N~ls~LsH~RRissl 413 (1119)
T 2a6h_C 351 LARGVRERMLMG-----SEDSLTPAKLVNSRPLEAAIREFFSRSQ------------LSQFKDETNPLSSLRHKRRISAL 413 (1119)
T ss_dssp HHHHHHHHHHHS-----CSSCCSSTTTCCSHHHHHHHHHHHHTCS------------SEEECCCSSTHHHHHHHHEEESS
T ss_pred HHHHHHHHhhhh-----cccccchHHhhccchhHHHHHHHhhccC------------ccccccccchHhhhhhhheeccc
Confidence 999999999764 1235677778899999999999999986 4899999999999999999986
Q ss_pred ---ccccccccCCCCccCCCCCccccccCCCCCCcchhhhhcccceeeccCCCchhHHHHHhhcCCeeccccCccccCCC
Q 001092 466 ---QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNP 542 (1159)
Q Consensus 466 ---~f~~~~K~t~~R~Lhps~wG~iCPveTPEG~~cGLi~~LA~~a~Vt~~~~~~~i~~~l~~lG~~~l~~~~~~~~~~~ 542 (1159)
++++++|+++||+||||||||+||+|||||+|||||||||++|+|+. +|+.+
T Consensus 414 gpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~~-------------~G~~e------------ 468 (1119)
T 2a6h_C 414 GPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDE-------------LGFIR------------ 468 (1119)
T ss_dssp SSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEECS-------------SSCEE------------
T ss_pred CCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeecc-------------cCccc------------
Confidence 59999999999999999999999999999999999999999999984 45532
Q ss_pred CcEEEEEcCeEEEeecChhhHHHHHHHHhhcCCCCceeEEEecccCceEEEecCCCeeeeeEEEEecCcccchhhhHHHh
Q 001092 543 NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKEL 622 (1159)
Q Consensus 543 ~~~~V~lnG~~iG~~~~~~~~~~~lr~~Rr~~~i~~~vsi~~~~~~~~i~I~td~GRl~RPl~~v~~~~~~~~~~~~~~~ 622 (1159)
.++.+.+||+|.+.+.--....+ ... -| ....+.+ |.||++||++.++++
T Consensus 469 ~p~~~V~nG~v~~~i~yl~a~ee-------~~~-----~i----~~~~~~l--~~gr~~r~~i~~r~~------------ 518 (1119)
T 2a6h_C 469 TPYRRVVGGVVTDEVVYMTATEE-------DRY-----TI----AQANTPL--EGNRIAAERVVARRK------------ 518 (1119)
T ss_dssp EEEEEEETTEEEEEEEEECHHHH-------HHS-----CE----ECTTSCB--SSSBBCCSSEEEESS------------
T ss_pred CCcEEEECCEEeeeeEEeChhcc-------cce-----EE----ecCceee--cCCccccCceeEEec------------
Confidence 12444469998653321100000 000 01 1112222 459999999887631
Q ss_pred hcCCCchhhhhccCceeeeccccccceEEEeecCCCCCcceeeeecCccccccccccccCCCCCCCCccccccccccCCc
Q 001092 623 LDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702 (1159)
Q Consensus 623 ~~~~~~~~~l~~~g~iE~id~~E~~~~~Ia~~~~~~~~~~th~Ei~p~~ilsv~aslIPF~~hNqspRn~yq~~M~KQa~ 702 (1159)
-||+ .+.+ ..+|||||||++||||+||+|||+|||||||||||||||||||
T Consensus 519 ---------------~e~~----------~~~~----~~~~~~ei~P~~ilsv~aslIPF~ehn~s~R~lmgsnM~kQAv 569 (1119)
T 2a6h_C 519 ---------------GEPV----------IVSP----EEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQAV 569 (1119)
T ss_dssp ---------------SSEE----------EECT----TTCCEEECCTTTTSCHHHHTCTTGGGBCHHHHHHHHHHHTTBC
T ss_pred ---------------ccee----------eech----hHeEEEEeccccccccccccCCCcccCCCcccccccccccccc
Confidence 1332 1222 2369999999999999999999999999999999999999999
Q ss_pred cceee-----------------------------------eeccccc---cceeee----------cCCCcceeeecee-
Q 001092 703 GNIAF-----------------------------------NQLCRMD---SLLYLL----------VYPQRPLLTTRTI- 733 (1159)
Q Consensus 703 g~~~~-----------------------------------n~~~R~D---~~~y~l----------~ypQ~Plv~t~~~- 733 (1159)
|++.. ++..|.| ++.|.| +|||+|||+++.+
T Consensus 570 ~l~~~~~p~vgTg~e~~~a~ds~~~~~a~~~G~v~~vd~~~i~ir~~~~~~~~y~L~~~~rsnq~t~~~QkPiV~~g~~v 649 (1119)
T 2a6h_C 570 PLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRV 649 (1119)
T ss_dssp CBSSCCCCSEECSCHHHHHHHTTCSEECSSSEEEEEECSSBEEEEETTTEEECCBCCCSEECTTSCEECCEECCCSSCCB
T ss_pred cccccCCCeeeccccceeeeccCceeEeccCCEEEEecCceEEEEccCCcceeEEeeccccccccccccccceEeeCcee
Confidence 98654 3445663 457776 8999999999864
Q ss_pred ---e------eecCCCCCCCcceEEEEEecCCCCCCCcEEeeccccccCceeEEEEEEEEEEeccccCCCcceecC-CCC
Q 001092 734 ---E------LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR-PDR 803 (1159)
Q Consensus 734 ---~------~~~~~~~p~G~N~iVAv~~~~Gyn~EDaiiink~s~~rg~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~~ 803 (1159)
+ .++++|+|+|+||+||||||+||||||||||||++++||+|||+|+++|++++++++.|.++++.. |+.
T Consensus 650 ~~g~~ladg~~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~rg~~tSihi~~~e~~~r~~~~g~eeit~~ip~~ 729 (1119)
T 2a6h_C 650 RKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPHL 729 (1119)
T ss_dssp CTTCEEEECTTBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHHTTCSEEEEEEEEEEEEECCTTCCCBCCSCCSSS
T ss_pred eccceeccccccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHhcCCceEEEEEEEEeeeeecCCCceeeeccCCCc
Confidence 2 367899999999999999999999999999999999999999999999999999988887775543 554
Q ss_pred CCCCcccccccccchhhhccCCCCcccCCCceeCCCCEEEEEecCCCCCCCCCC------CCCCCCcccccceeeecCCC
Q 001092 804 TGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS------PTGQTDSRYRSARQTYKGPD 877 (1159)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gd~li~k~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~~~ 877 (1159)
+ ...|++||+||||++|++|++|||||||++|+.+.+.... .++++...++|+|+++++++
T Consensus 730 ~-------------~~~~~~LD~dGiv~iG~~V~~gDiLvgK~tP~~~~~~~~ee~ll~aifg~k~~~~rd~Sl~~~~~e 796 (1119)
T 2a6h_C 730 S-------------EAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGE 796 (1119)
T ss_dssp C-------------SGGGSSCCSSSBCCTTCBCCTTSEEECCEEESSSSSCCHHHHHHHHHHHSCCCCEEECCEECCSSC
T ss_pred c-------------hhhhhccCCCcccCCCCEECCCCEEEEEecCCccccCChhhhhhhhhhcccccccceeeEEccCCc
Confidence 2 2478999999999999999999999999999976543211 01234567899999999999
Q ss_pred CCceEEEEEEEeeCCC-Cc-------EEEEEEEeeecCCCcccccccccCCccEEEeeeccCCCCCCCCCCCCcEEeCCC
Q 001092 878 GETCVVDRVALCSDKN-GD-------LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 949 (1159)
Q Consensus 878 ~~~~~vd~v~~~~~~~-~~-------~~vkv~~r~~R~p~iGDKf~sRhGqKGvvs~i~~~eDmPf~~~G~~pDiI~NPh 949 (1159)
.|+|++|.++.+++ |. +.|||++|++|+|+||||||||||||||||+|||+|||||++||++||||||||
T Consensus 797 --~G~V~~V~~~~~~~~g~~l~~~~~~~vkV~i~~~R~~~vGDKfasRHGqKGVis~i~p~eDMPf~~dG~~pDiIlNPh 874 (1119)
T 2a6h_C 797 --GGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPL 874 (1119)
T ss_dssp --CCEEEEEEEECSSCSSCCCCTTEEEEEEEEEEEEEECCTTCEEECTTSCEEEEEEEECTTTSCBCSSSCBCSEECCST
T ss_pred --cEEEEEEEEEccCCCCcccCCCcceEEEEEEcccCCcccCchhhhccCCCceEEeeeccCCCccccCCCCccEEeCCC
Confidence 99999999988766 53 789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHhcccccccCCceeeeee-ccCCCCCCCcHHHHHHHHHHc---------------------------
Q 001092 950 GFPSRMTVGKMIELLGGKAGVSCGRFHYGSA-FGEPSGHADTVESISETLVKH--------------------------- 1001 (1159)
Q Consensus 950 ~~PSRMtiGql~E~~~gk~~~~~g~~~~~t~-F~~~~~~~~~~~~~~~~l~~~--------------------------- 1001 (1159)
|||||||||||+|+++||||++.|.. .+|| |+ +.+++++.+.|.++
T Consensus 875 gvPSRMtiGqllE~~lG~a~~~~g~~-~atp~F~-----~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1119)
T 2a6h_C 875 GVPSRMNLGQILETHLGLAGYFLGQR-YISPIFD-----GAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAE 948 (1119)
T ss_dssp TTTTTTBTHHHHHHHHHHHHHHTTEE-EECCTTT-----SCCHHHHHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHHHH
T ss_pred cCccccchhhhhHHHhhhHHhhcCCc-eEecccC-----CCCHHHHHHHHHHhhhhccccccccccccchhhhhhhhhhh
Confidence 99999999999999999999999985 4999 99 78999999999999
Q ss_pred --CC--------------CCCCceEEEeCCCCceeeeeEeEeeeeeeecccccCcccEEecccCcccccccCccccccCC
Q 001092 1002 --GF--------------SYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNG 1065 (1159)
Q Consensus 1002 --g~--------------~~~G~e~ly~G~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~Gr~~~G 1065 (1159)
|| +++|+++||||+||++|+++||+|++|||||+|||+|||||||+|||++|||||++||||+|
T Consensus 949 ~~g~~~~~~~~~~~~~~~~~~Gk~~lydG~TGe~~~~~I~vG~~Yy~kL~HmVdDKihaRs~GP~s~lTqQP~~Gra~~G 1028 (1119)
T 2a6h_C 949 KLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFG 1028 (1119)
T ss_dssp TTTSSCTTSCHHHHHHHHHHTTEECCBCSSSCCBCSSCEEEEEEEEEEBCCCTTTSCEEESSCCBCSSSCSBCCCSSSCC
T ss_pred cCCcccccccchhhhcccCCCCceEeecCCCCCCccceEEEEhHHhhcchhhcccCcEEeeccccceeecCCCcccccCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeehhhhHHHHcccHHHHHHhhccCCCcccceeccccccceeecccccceecccccCCCccccccccHhHHHHHHHH
Q 001092 1066 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQEL 1145 (1159)
Q Consensus 1066 G~R~GEMErd~l~a~Gas~~L~erl~~~SD~~~~~vC~~cg~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~k~L~~EL 1145 (1159)
||||||||||||+|||||++|||||+.+||++.+++ ..+|..|+ +.++.++.||||||||+|||
T Consensus 1029 GqRfGEME~~aL~a~GAa~~L~E~L~~kSD~~~gr~---------------~~~~~~~~-~~~i~~~~iP~sfk~L~~EL 1092 (1119)
T 2a6h_C 1029 GQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRN---------------AAYEAIIK-GEDVPEPSVPESFRVLVKEL 1092 (1119)
T ss_dssp CEEECHHHHHHHHHTTCSHHHHHHHTTTTTCHHHHH---------------HHHHHHHT-TCCCCCCCCCHHHHHHHHHH
T ss_pred CeeeehhehhhhhhccHHHHHHHHhccCCccccccc---------------ceEEEeec-CCccCccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999985442 14577774 67899999999999999999
Q ss_pred HhCCcccEEEecc
Q 001092 1146 QSMNIVPRLKLAE 1158 (1159)
Q Consensus 1146 ~sm~i~~~l~~~~ 1158 (1159)
+||||++++.+++
T Consensus 1093 ~sl~i~~~l~~~~ 1105 (1119)
T 2a6h_C 1093 QALALDVQTLDEK 1105 (1119)
T ss_dssp HHSSCEECCBCSS
T ss_pred HhCCCceEEEecC
Confidence 9999999998753
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=7.3e-216 Score=1988.97 Aligned_cols=945 Identities=23% Similarity=0.380 Sum_probs=796.5
Q ss_pred CCcccccccccccccccccchHHHHHHHHHHHHH------hChHHHHhccCceeecCCCcEEEEEeEEEEcCCccccCCc
Q 001092 24 PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVN------TGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97 (1159)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~~~Lv~~qi~SFn~Fl~------~gL~~i~~~~~~I~~~~~~~~~l~f~~i~i~~P~~~~~~~ 97 (1159)
.-.+.+.+|+.++..++.++|+++|++||+||++ .||++++++++||+ +.++++.|+|.++++++|.+.
T Consensus 7 ~~~~~R~~f~k~~~~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~-d~~~~~~Lef~~y~l~~Pk~~---- 81 (1342)
T 3lu0_C 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLGEPVFD---- 81 (1342)
T ss_dssp -CCCCCCCSSCCCCSSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCE-ETTTTEECCEEEECCCCCSCC----
T ss_pred CCceeEeccccCCcCCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEE-CCCCCEEEEEeeEEeCCCCCC----
Confidence 3446678899999999999999999999999997 89999999999997 456789999999999999885
Q ss_pred CCCCChhhHhhcCCccCccEEEEEEEEECCc---c-cceeeEEeeEEEeecceeeccccccCCCCCHHHHHhcCCCCCCC
Q 001092 98 SEKLNPHMCRLSDMTYAAPILVNIEYVQGSH---T-EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDP 173 (1159)
Q Consensus 98 ~~~l~P~EcR~r~lTYsa~L~v~i~~~~~~~---~-~~~~i~~~~v~lG~IPIMv~S~~C~L~~ls~~eli~~~E~~~d~ 173 (1159)
+.||++|++||+|||+|+++++..+. + .++++++++|++|+||+|+ .
T Consensus 82 -----~~Ec~~r~lTYsapL~v~~rL~~~~~d~~~~~~~eikeq~Vy~GdiPLMT------------------------~ 132 (1342)
T 3lu0_C 82 -----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT------------------------D 132 (1342)
T ss_dssp -----SSTTTSSCCCCCCCCBEEECCEECCCSSCCCCCCCCCBCCCBCCCCCCCC------------------------S
T ss_pred -----HHHHHhcCCCcccceEEEEEEEEeccccccccccceEEEEEEEecCceEC------------------------C
Confidence 59999999999999999999986431 1 1356778899999999999 7
Q ss_pred CcEEEEcCchhhhHhhhhccCCeEEEEeC--C---CCc--EEEEEEecCCCcceEEEEEeeCCEEEEEEcceeccccHHH
Q 001092 174 GGYFIIKGTEKVLLIQEQLSKNRVIIDTD--K---KGN--INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMV 246 (1159)
Q Consensus 174 GGYFIING~ERVI~~q~~~s~N~i~~~~~--~---~g~--~~a~v~s~~~~~~s~~~~~~~~g~i~~r~~~~~~~IPl~i 246 (1159)
+|||||||+|||||+|+++||+ ||+..+ + .|. |.|.++|.++ +|..+..++++.+|+|+++ +++||+++
T Consensus 133 ~GtFIING~ERVIVsQl~RSPG-Vyf~~~~~k~~~~gk~lysa~IIP~RG--sWlefe~D~kd~l~vrIdr-~rKipvt~ 208 (1342)
T 3lu0_C 133 NGTFVINGTERVIVSQLHRSPG-VFFDSDKGKTHSSGKVLYNARIIPYRG--SWLDFEFDPKDNLFVRIDR-RRKLPATI 208 (1342)
T ss_dssp SSCEESSSSEEECCEEEECCSS-CCCCSCCSCSSSCCCSCCEEEECCSSS--CCEEEEEETTTEEEEEESS-CSCEETTH
T ss_pred CcEEEEcCceEEEEEeecccCc-eeEeccccccCCCCceEEEEEEecCCC--ccEEEEEcCCCeEEEEecC-CCceeeeh
Confidence 9999999999999999999998 877643 1 243 7899998765 6777888889999999999 57999999
Q ss_pred HHHHhcCCCHHHHHHHhCCchhh------------H--------------------------------------------
Q 001092 247 VMKAMGMESDQEVVQMVGRDPRY------------S-------------------------------------------- 270 (1159)
Q Consensus 247 lLrALG~~sD~eI~~~i~~~~~~------------~-------------------------------------------- 270 (1159)
||||||++ ++||++.|+....+ .
T Consensus 209 lLrALG~~-~~~Il~~f~~~~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~~it~~~~~~l~~~g~~~i~v 287 (1342)
T 3lu0_C 209 ILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 (1342)
T ss_dssp HHHTTTCC-HHHHHTTTSCEEEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSSEECSHHHHHHHHTTCCCEEC
T ss_pred hHhHhCCC-HHHHHHHhcccceEEeccCceeeecchhhhcccccccchhccccceecccccccHHHHHHHHhccCccccc
Confidence 99999995 68999888421000 0
Q ss_pred -------------------------------hhhhHhHHHH-----------------------HhcCCcCHHHHHHHHh
Q 001092 271 -------------------------------ALLLPSIEEC-----------------------ANLDIYTQEKALEYLE 296 (1159)
Q Consensus 271 -------------------------------~~l~~~l~~~-----------------------~~~~i~t~~~Al~yIg 296 (1159)
+.+...+.++ ..+...++++||.+|+
T Consensus 288 ~~~~l~g~~la~divd~~tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i~~tl~~d~~~~~~eAl~~iy 367 (1342)
T 3lu0_C 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 (1342)
T ss_dssp CSHHHHTSEECSCEECTTTCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSGGGTTTTCCCCSSHHHHHHHH
T ss_pred CHHHhhcchhhheeeecCCCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHHHHHHhhccCCCHHHHHHHHH
Confidence 0001111111 1123567999999999
Q ss_pred hhcccCCCCCCCCChHHHHHHHHHhhhc-------cCCCC---------C--CCCCCCcchhHHHHHHHHHHhccCCCCC
Q 001092 297 GKVKRSTFGSPPNDREGRAFSILRDVFL-------ANVPV---------H--NNNFRPKCFYVAVMLRRMVEAMLNKDAM 358 (1159)
Q Consensus 297 ~r~r~~~~~~~~~~~~e~~~~~L~~~ll-------~Hl~~---------~--~~~~~~K~~~L~~Mi~kLl~~~~g~~~~ 358 (1159)
+++|++ ++. ..+.|+.+|++.|| +|+|. . ..+..-+...+..++++|+.+..|.+..
T Consensus 368 r~lrpg----ep~-t~e~a~~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~DIi~~i~~Li~l~~g~~~~ 442 (1342)
T 3lu0_C 368 RMMRPG----EPP-TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 (1342)
T ss_dssp HHHSCS----SCC-CTTHHHHHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTHHHHHHHHHHHHHHTSSCC
T ss_pred HhcCCC----CCC-CHHHHHHHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHHHHHHHHHHHHHhhCCCCC
Confidence 999998 444 56889999998886 66661 1 1122234556778999999999999999
Q ss_pred CCcccccCcEEcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccchHHHHHHHhccCCCcccccc
Q 001092 359 DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFK 438 (1159)
Q Consensus 359 DD~D~l~NKRv~l~G~Ll~~lfr~~l~~~~~~ik~~i~k~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~~~~~~ 438 (1159)
||+|||+||||+++|+||++|||.+|.++.+.++++|.+. ....+.+..+++++++++++++||+|
T Consensus 443 DDiDHLgNrRvr~vGeLl~~qfr~~l~r~~r~i~~~~~~~-----~~~~~~~~~lin~~~i~~~~k~ffg~--------- 508 (1342)
T 3lu0_C 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-----DLDTLMPQDMINAKPISAAVKEFFGS--------- 508 (1342)
T ss_dssp CCSSSTTTSEEECHHHHHHHTHHHHHHHHHHHHTTHHHHC-----CSSCCSSTTTCCSSTTHHHHTTTTTT---------
T ss_pred cchhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccccCCHHHHhccchHHHHHHHHhCc---------
Confidence 9999999999999999999999999999999999999763 22356777889999999999999843
Q ss_pred cccccceEEccccccccccccccccc----cccccccccCCCCccCCCCCccccccCCCCCCcchhhhhcccceeeccCC
Q 001092 439 MHRKGMTQVLARLSFIGTLGHMTRVS----PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514 (1159)
Q Consensus 439 ~q~sGvsq~l~RlN~ls~LshlRrv~----s~f~~~~K~t~~R~Lhps~wG~iCPveTPEG~~cGLi~~LA~~a~Vt~~~ 514 (1159)
+|+||+|||+||+|.|+|+||++ +++.++++.+.+|+|||||||||||+|||||+|||||+|||++|+|+.
T Consensus 509 ---s~lSQ~lDqtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI~sLA~~a~in~-- 583 (1342)
T 3lu0_C 509 ---SQLSQFMVQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE-- 583 (1342)
T ss_dssp ---CSSCEECCCSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSCCBCCSSCCBCS--
T ss_pred ---cccceeecCCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeeecchhheEEecc--
Confidence 68999999999999999999998 357899999999999999999999999999999999999999999974
Q ss_pred CchhHHHHHhhcCCeeccccCccccCCCCcEEEEEcCeEEEeecChhhHHHHHHHHhhcCCCCceeEEEecc-cCceEEE
Q 001092 515 EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNE-KQRCVYI 593 (1159)
Q Consensus 515 ~~~~i~~~l~~lG~~~l~~~~~~~~~~~~~~~V~lnG~~iG~~~~~~~~~~~lr~~Rr~~~i~~~vsi~~~~-~~~~i~I 593 (1159)
+|+.. .+|.+..||++-..+. |+.. ......|
T Consensus 584 -----------~Gfie------------tPyr~V~~g~v~~~i~------------------------yLsA~eE~~~~I 616 (1342)
T 3lu0_C 584 -----------YGFLE------------TPYRKVTDGVVTDEIH------------------------YLSAIEEGNYVI 616 (1342)
T ss_dssp -----------SSCBC------------EEEEEEETTEEEEEEE------------------------EECTTTGGGSCB
T ss_pred -----------CCccc------------CCcEEEECCEEcCcee------------------------eCChHHhcCceE
Confidence 55532 2577778998743211 1111 0011111
Q ss_pred ------ecCCCeeeeeEEEEecCcccchhhhHHHhhcCCCchhhhhccCceeeeccccccceEEEeecCCCCCcceeeee
Q 001092 594 ------ASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEI 667 (1159)
Q Consensus 594 ------~td~GRl~RPl~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~iE~id~~E~~~~~Ia~~~~~~~~~~th~Ei 667 (1159)
..+.|++.++++.++.. | ||+- +.+ .++|||+|
T Consensus 617 Aqan~~l~~~g~~~~~~v~~R~~-------------------------~--e~~~----------~~~----~~v~~~dv 655 (1342)
T 3lu0_C 617 AQANSNLDEEGHFVEDLVTCRSK-------------------------G--ESSL----------FSR----DQVDYMDV 655 (1342)
T ss_dssp CCSSSCCSSSSCCSCSSEEEECS-------------------------S--CEEE----------ECT----TTCCEEES
T ss_pred EecCcccCCCCcccCCeEEEEec-------------------------C--ceEE----------eCh----HHCeeEec
Confidence 14678888888776521 1 2221 112 23799999
Q ss_pred cCccccccccccccCCCCCCCCccccccccccCCccce-----------------------------------eeeeccc
Q 001092 668 EPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI-----------------------------------AFNQLCR 712 (1159)
Q Consensus 668 ~p~~ilsv~aslIPF~~hNqspRn~yq~~M~KQa~g~~-----------------------------------~~n~~~R 712 (1159)
+|.||+||+||||||+|||||||++|||||||||||+. +.++..|
T Consensus 656 sP~qivSvaaslIPFLEhdDAnRaLMGsNMQRQAVPLl~~e~p~VgTG~E~~~a~dsg~~i~a~~~G~v~~vda~~I~Ir 735 (1342)
T 3lu0_C 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK 735 (1342)
T ss_dssp CTTTTSCHHHHSCTTSTTBCHHHHHHHHHTTTTBCCCSSCCCCSSBCSCHHHHHHHTTTSCBCSSCBEECCCCSSBCCEE
T ss_pred CHHHhcchhhccCCCcccCCccccchhhhccccccccccCCCCeEecccchheeecCCceEEecCCCEEEEecCCeEEEE
Confidence 99999999999999999999999999999999999976 4455566
Q ss_pred ccc----------ceee----------ecCCCcceeeecee----ee------ecCCCCCCCcceEEEEEecCCCCCCCc
Q 001092 713 MDS----------LLYL----------LVYPQRPLLTTRTI----EL------VGYDKLGAGQNATVAVMSYSGYDIEDA 762 (1159)
Q Consensus 713 ~D~----------~~y~----------l~ypQ~Plv~t~~~----~~------~~~~~~p~G~N~iVAv~~~~Gyn~EDa 762 (1159)
.|. ..|. +||+|||+|+++.. +. +..+|+|+|+|++||||||.|||||||
T Consensus 736 ~~~~~~~~~~~~~~~y~L~kf~RSNq~Tc~~QrPiV~~G~~V~~GdilADG~st~~GElaLG~N~lVAfMpW~GYNfEDA 815 (1342)
T 3lu0_C 736 VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 (1342)
T ss_dssp ECSSSSSSSCCEEECCBCCCSCBCSSSCBCCCCBCCCSSCCBCTTCBCBCCSSCSSSSCCCSEECCEECCCCSSTTSSSE
T ss_pred eCCCccccccCcceEEEecccccccccccccccceeecCCEEecCcEecccccccCCeeecccccEEEEecccCcccccc
Confidence 664 2333 48999999999965 43 378999999999999999999999999
Q ss_pred EEeeccccccCceeEEEEEEEEEEeccccCCCcceecC-CCCCCCCcccccccccchhhhccCCCCcccCCCceeCCCCE
Q 001092 763 IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILR-PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDV 841 (1159)
Q Consensus 763 iiink~s~~rg~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gd~ 841 (1159)
||||+++|++|+|||+|+++|++++++++.|.+|++.+ |+.+ +..+++||++|||++|++|++|||
T Consensus 816 IlISErlV~eD~fTSIHIee~e~~aRdtklG~EeiTrdIPnv~-------------e~al~~LDe~GIv~iGa~V~~GDI 882 (1342)
T 3lu0_C 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG-------------EAALSKLDESGIVYIGAEVTGGDI 882 (1342)
T ss_dssp EEECTHHHHTTTSCEEEEEEEEEECCEETTEECCCCSCCSSCC-------------HHHHHSBCSSSCBCTTCCCCTTCE
T ss_pred hhhhhhhhhcCCceeEEEEEEeeeeeecCCCCceecccCCCCC-------------hHHHhcCCCCCCeecCcEECCCCE
Confidence 99999999999999999999999999999998887655 7762 368999999999999999999999
Q ss_pred EEEEecCCCCCCCCC------CCCCCCCcccccceeeecCCCCCceEEEEEEEeeCC-----------------------
Q 001092 842 YINKESPLETRGSIM------SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK----------------------- 892 (1159)
Q Consensus 842 li~k~~~~~~~~~~~------~~~~~~~~~~~~~s~~~~~~~~~~~~vd~v~~~~~~----------------------- 892 (1159)
||||++|+++.+..+ .-++++....+|+|+++++++ .|+|..|.+++..
T Consensus 883 LVGKvtPkge~~~tpEekLLraIFGeka~~vkDtSL~vp~g~--~G~Vidv~~f~r~~~~k~~~~~~~~~~~~~~~~~~~ 960 (1342)
T 3lu0_C 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV--SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 (1342)
T ss_dssp EECCCCBCCTTTCCHHHHHGGGTSCSSSSSBCCCCEECCTTC--CCEEEECCCCCCGGGCCCTHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCCCCcCChHHHHHHHHhcCcccccccCcEecCCCC--cEEEEEEEEEecccccchhhhhHHHHHHHHHHHHhH
Confidence 999999998754321 125778888999999999988 9999888755321
Q ss_pred --------------------------------------------------------------------------------
Q 001092 893 -------------------------------------------------------------------------------- 892 (1159)
Q Consensus 893 -------------------------------------------------------------------------------- 892 (1159)
T Consensus 961 ~~~~~~l~~~~~~~l~~~l~~~g~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~gd 1040 (1342)
T 3lu0_C 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 (1342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHTTSCGGGTTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhCCHHHhhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence
Q ss_pred ----CCcEEEEEEEeeecCCCcccccccccCCccEEEeeeccCCCCCCCCCCCCcEEeCCCCCCCCccHHHHHHHhcccc
Q 001092 893 ----NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 968 (1159)
Q Consensus 893 ----~~~~~vkv~~r~~R~p~iGDKf~sRhGqKGvvs~i~~~eDmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~ 968 (1159)
+..+.|||++|+.|+|++|||||||||||||||+|||+|||||++||++|||||||||||||||||||+|+++|||
T Consensus 1041 ~l~~gv~k~VkV~ia~kRk~qvGDK~AgRHGnKGVis~I~p~EDMPf~~dG~~pDIIlNP~gvPSRMnIGqilE~~lG~a 1120 (1342)
T 3lu0_C 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 (1342)
T ss_dssp CCCSSSSCEEEEEEEEEECCCTTCEEECSSSCCEEECCCCCTTTSCEETTEEECSEECCGGGTTSSCBTHHHHHHHHHHG
T ss_pred ccCcCCceEEEEEEEEeccCCCCCCcccccCCCceEEEEecccCCCCCCCCCCCcEEeCCCCCCCccchhhhhHHhhhHH
Confidence 1357899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcee-----------------------------------------------------eeee-ccCCCCCCCcHHHH
Q 001092 969 GVSCGRFH-----------------------------------------------------YGSA-FGEPSGHADTVESI 994 (1159)
Q Consensus 969 ~~~~g~~~-----------------------------------------------------~~t~-F~~~~~~~~~~~~~ 994 (1159)
|+..|... .||| |+ +++.+++
T Consensus 1121 a~~~G~~i~~~~~~~~~~~~~r~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~aTPvFd-----ga~~~~i 1195 (1342)
T 3lu0_C 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD-----GAKEAEI 1195 (1342)
T ss_dssp GGTSSTHHHHTTTHHHHCTTTHHHHHHHTTTTCCCSSSCCTTTSCHHHHHHTTTTTSSCTTCBCCSSS-----SCCHHHH
T ss_pred HHhcCchHHHHHHhhhhhHHHHHHHHHHhhcccccchhhhhcccchHHHHHHhhhhccCCcccCCCCC-----CCCHHHH
Confidence 99987521 1565 55 8999999
Q ss_pred HHHHHHcCCCCCCceEEEeCCCCceeeeeEeEeeeeeeecccccCcccEEecccCcccccccCccccccCCceeeeehhh
Q 001092 995 SETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMER 1074 (1159)
Q Consensus 995 ~~~l~~~g~~~~G~e~ly~G~tG~~~~~~if~G~~yy~rL~Hmv~DK~~~R~~Gp~~~lT~QP~~Gr~~~GG~R~GEMEr 1074 (1159)
.+.|.++||+++|+++||||+||++|+++||+|++|||||+|||+|||||||+|||++|||||++||+|+||||||||||
T Consensus 1196 ~~~L~~aG~~~~Gk~~LydGrTGe~f~~~V~vG~~YylKL~HmVdDKiHaRs~GPysllTqQPl~Gkaq~GGqRfGEMEv 1275 (1342)
T 3lu0_C 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 (1342)
T ss_dssp HHHTSSSSSCSSSCBCCBCSSSCSBCSSCBCEECCEEEEBCCCGGGSCCCBSSCCBCSSSCCBCCCSSSCCCCCCCHHHH
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCcccceeeeehhHhhhhhccccceEEeccCCCcccccCCCCccccCCCeeeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHcccHHHHHHhhccCCCcccceeccccccceeecccccceecccccCCCccccccccHhHHHHHHHHHhCCcccEE
Q 001092 1075 DCLIAYGASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRL 1154 (1159)
Q Consensus 1075 d~l~a~Gas~~L~erl~~~SD~~~~~vC~~cg~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~k~L~~EL~sm~i~~~l 1154 (1159)
|||+|||||++|||||+.+||++ |.+|+ .+|..| ++.++..+.||||||+|++||+||||++++
T Consensus 1276 waL~a~GAa~~LqE~Lt~kSDdv----~gr~~-----------~y~~i~-~g~~~~~~~iPesfkvL~~EL~sl~l~v~l 1339 (1342)
T 3lu0_C 1276 WALEAYGAAYTLQEMLTVKSDDV----NGRTK-----------MYKNIV-DGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 (1342)
T ss_dssp HHHHHSSCSHHHHHHTTTSSSCH----HHHHH-----------HHHHHT-TTSCCCCCCCCHHHHHHHHHHHTSSCCEEC
T ss_pred HHHHhccHHHHHHHHhhcCCCcc----ccchh-----------hhhhhc-CCCCCCcCCCCHHHHHHHHHHHhCCCCeEe
Confidence 99999999999999999999985 44443 345555 468899999999999999999999999987
Q ss_pred E
Q 001092 1155 K 1155 (1159)
Q Consensus 1155 ~ 1155 (1159)
.
T Consensus 1340 ~ 1340 (1342)
T 3lu0_C 1340 E 1340 (1342)
T ss_dssp C
T ss_pred c
Confidence 4
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.96 E-value=1.7e-30 Score=269.51 Aligned_cols=118 Identities=26% Similarity=0.553 Sum_probs=108.0
Q ss_pred chHHHHHHHHHHHH----------HhChHHHHhccCceeecC--CCcEEEEEeEEEEcCCccccCCcCCCCChhhHhhcC
Q 001092 43 GLVKQHLDSFNYFV----------NTGIRKIVRANDRIVSGI--DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSD 110 (1159)
Q Consensus 43 ~Lv~~qi~SFn~Fl----------~~gL~~i~~~~~~I~~~~--~~~~~l~f~~i~i~~P~~~~~~~~~~l~P~EcR~r~ 110 (1159)
+|+++|++|||||+ ++||++++++++||+... ++++.|+|.++++++|.+ +|+|||+|+
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~~~~~~~~L~f~~~~l~~P~~---------~p~Ecr~r~ 72 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPF---------SQDECREKD 72 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECCSSSCCEEEEEEEEEECCCSS---------CHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeeccCCCCeEEEEEEEEEecCCCC---------CHHHHHhcC
Confidence 68999999999999 899999999999998653 378999999999999975 899999999
Q ss_pred CccCccEEEEEEEEECCcccceeeEEeeEEEeecceeeccccccCCCCCHHHHHhcCCCCCCCCcEEEEcCchhhhHhhh
Q 001092 111 MTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190 (1159)
Q Consensus 111 lTYsa~L~v~i~~~~~~~~~~~~i~~~~v~lG~IPIMv~S~~C~L~~ls~~eli~~~E~~~d~GGYFIING~ERVI~~q~ 190 (1159)
+||+|||+|+++++..+. +++++++|++|+||||+ +||||||||+||||++||
T Consensus 73 lTYsapl~v~v~l~~~~~---~~i~~~~v~iG~iPlMt------------------------~gGyFIING~ERVIVsQe 125 (188)
T 3mlq_A 73 LTYQAPLYARLQLIHKDT---GLIKEDEVFLGHLPLMT------------------------EDGSFIINGADRVIVSQG 125 (188)
T ss_dssp CCCEEEEEEEEEEEETTT---CCEEEEEEEEEEEECCC------------------------TTSCEEETTEEEECCCCS
T ss_pred CCcceeEEEEEEEEECCC---ceEEEEEEEEcccCEEC------------------------CCCEEEECCEEEEEEEee
Confidence 999999999999987542 56778899999999999 899999999999999999
Q ss_pred hccCCe
Q 001092 191 QLSKNR 196 (1159)
Q Consensus 191 ~~s~N~ 196 (1159)
++++|.
T Consensus 126 ~r~~ge 131 (188)
T 3mlq_A 126 GRTVGE 131 (188)
T ss_dssp SSCHHH
T ss_pred cccCCe
Confidence 999974
No 7
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=99.33 E-value=8.2e-13 Score=138.57 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=81.0
Q ss_pred EEEEEEEEEeccccCCCcceecC-CCCCCCCcccccccccchhhhccCCCCcccCCCceeCCCCEEEEEecCCCCCCCCC
Q 001092 778 IVVKKYTAINQKYANSTSDRILR-PDRTGPGAERMQVVHHSNLLLLILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM 856 (1159)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gd~li~k~~~~~~~~~~~ 856 (1159)
+|+..|+++++.++.|.++++.. |+.+ ...+++||++||+++|++|++|||||||++|++..+..+
T Consensus 2 iHIeeyei~~r~tk~G~EeIT~dIPnv~-------------e~~l~~LDe~GIV~iGs~V~~GDILVGKvTPk~~~~~tp 68 (228)
T 3tbi_B 2 IHIQELACVSRDTKLGPEEITADIPNVG-------------EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 68 (228)
T ss_dssp CEEEEEEEEEEEETTEECEESSCCSSCC-------------HHHHHTBCTTSBBCTTCCCBTTCEEECEEEECCGGGCCH
T ss_pred ccEEEEEEEEEEcCCCCeEEecCCCCcc-------------HHHHhcCCCCCCeecCCEECCCCEEEeccCCCCCCCCCh
Confidence 69999999999999887444433 7652 368999999999999999999999999999998654322
Q ss_pred C------CCCCCCcccccceeeecCCCCCceEEEEEEEeeC
Q 001092 857 S------PTGQTDSRYRSARQTYKGPDGETCVVDRVALCSD 891 (1159)
Q Consensus 857 ~------~~~~~~~~~~~~s~~~~~~~~~~~~vd~v~~~~~ 891 (1159)
. -++.+....+|+|+++++++ .|+|+.|.+++.
T Consensus 69 EekLL~aIfg~k~~~vkDtSL~vp~G~--~G~VidV~if~r 107 (228)
T 3tbi_B 69 EEKLLRAIFGEKASDVKDSSLRVPNGV--SGTVIDVQVFTR 107 (228)
T ss_dssp HHHHHHHHHCTTSSCEEECCEECCSSC--BEEEEEEEEEEB
T ss_pred HHHHHHHHhCCccccceeCcEecCCCC--cEEEEEEEEEec
Confidence 1 14567778999999999988 999999998764
No 8
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=99.12 E-value=2.8e-11 Score=141.53 Aligned_cols=63 Identities=37% Similarity=0.703 Sum_probs=57.7
Q ss_pred cccceeccccccceeecccccceecccccCCCccccccccHhHHHHHHHHHhCCcccEEEecc
Q 001092 1096 PFEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1158 (1159)
Q Consensus 1096 ~~~~~vC~~cg~~~~~~~~~~~~~C~~c~~~~~~~~v~iPy~~k~L~~EL~sm~i~~~l~~~~ 1158 (1159)
+++++||..||++++.+.+++..+|+.|+++..+.+|.||||||||+|||+||||.+||.+++
T Consensus 2 k~~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~iPYa~KlL~qEL~smnI~~rl~~~d 64 (436)
T 3qqc_A 2 KTEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLSE 64 (436)
T ss_dssp CEEEEEETTTCCBCEEETTTTEEECTTTCCSSSEEEEEECHHHHHHHHHHHHTTBCCEEEEEC
T ss_pred ceEEEEeCCCCceeeeccccCccCCCCCCCCCeEEEEEcChHHHHHHHHHHhCCeeceeeccc
Confidence 467899999999998766666789999999999999999999999999999999999999874
No 9
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.80 E-value=4.7e-08 Score=107.57 Aligned_cols=68 Identities=18% Similarity=0.365 Sum_probs=53.3
Q ss_pred ccCCeEEEEeCC-----CC--cEEEEEEecCCCcceEEEEEeeCCEEEEEEcceeccccHHHHHHHhcCCCHHHHHHHhC
Q 001092 192 LSKNRVIIDTDK-----KG--NINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264 (1159)
Q Consensus 192 ~s~N~i~~~~~~-----~g--~~~a~v~s~~~~~~s~~~~~~~~g~i~~r~~~~~~~IPl~ilLrALG~~sD~eI~~~i~ 264 (1159)
+||+ ||+..+. .| .|.|.++|.++ +|..+....++.+|+|+++ ++++|+++||||||++ ++||++.|+
T Consensus 4 ~SPG-v~f~~~~~~ths~g~~~y~~~iIP~RG--sWlefe~d~~d~~~vrIdr-~rK~p~t~lLrAlG~~-~edIL~~Fy 78 (296)
T 3lti_A 4 MSPG-VFFDSDKGKTHSSGKVLYNARIIPYRG--SWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYT-TEQILDLFF 78 (296)
T ss_dssp CCCE-EEEEEC---------CCEEEEEECSBS--CCEEEEECTTSCEEEEETT-CCCEETHHHHHHTTCC-HHHHHHHHC
T ss_pred CCCE-EEEecccCCcCCCCcEEEEEEEecCCC--ceEEEEEcCCCeEEEEEcC-cccchHHHHHHHcCCC-hHHHHHhcc
Confidence 5674 7776532 34 37899998764 6777777888999999998 4699999999999995 789999984
No 10
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=96.43 E-value=0.0016 Score=67.63 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=56.5
Q ss_pred ccCcEEcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccchHHHHHHHhccCCC
Q 001092 364 VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432 (1159)
Q Consensus 364 l~NKRv~l~G~Ll~~lfr~~l~~~~~~ik~~i~k~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw 432 (1159)
+-+|+.+++|+||+..++.+|.|+++.+|+++... +...+.+.+++|.++++.+|+.||.|+++
T Consensus 121 IVsQe~r~~gell~~q~r~gl~r~ek~~~e~~~~~-----~~~~~~~~~l~n~kp~~~~ik~ff~ss~L 184 (188)
T 3mlq_A 121 IVSQGGRTVGELMADQFRVGLARLARGVRERMVMG-----SPDTLTPAKLVNSRPLEAALREFFSRSQL 184 (188)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CGGGCCHHHHCCCHHHHHHHHHHHHTCEE
T ss_pred EEEeecccCCeeeEEehhhHHHHHHHHHHhhhccc-----cccccCcccchhhHHHHHHHHHhhccccc
Confidence 56889999999999999999999999999999764 23467888999999999999999988764
No 11
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=58.83 E-value=3.6 Score=35.75 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=31.4
Q ss_pred ccceeccccccceeecccccceecccccCCCcccc------ccccHhHHHHHHHHH
Q 001092 1097 FEVQVCRVCGLLGYYNHKLKAGICSTCKNGDNISS------MKLPYACKLLIQELQ 1146 (1159)
Q Consensus 1097 ~~~~vC~~cg~~~~~~~~~~~~~C~~c~~~~~~~~------v~iPy~~k~L~~EL~ 1146 (1159)
|.+..|+ ||...+.....++.-|+ |+..-++.+ +.-.....-+...|+
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lq 55 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQ 55 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHS
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHH
Confidence 4567899 99999887766777798 986444433 344444455555444
No 12
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.38 E-value=17 Score=37.96 Aligned_cols=28 Identities=21% Similarity=0.552 Sum_probs=20.3
Q ss_pred Ccccceeccccccceeecccccce-ecccccCC
Q 001092 1095 DPFEVQVCRVCGLLGYYNHKLKAG-ICSTCKNG 1126 (1159)
Q Consensus 1095 D~~~~~vC~~cg~~~~~~~~~~~~-~C~~c~~~ 1126 (1159)
|....|+|..||-+ |.. ..+ .|+.|+.+
T Consensus 167 ~~~~~~~C~~CG~i-~~g---~~p~~CP~C~~~ 195 (202)
T 1yuz_A 167 DDDKFHLCPICGYI-HKG---EDFEKCPICFRP 195 (202)
T ss_dssp CSCCEEECSSSCCE-EES---SCCSBCTTTCCB
T ss_pred CCCcEEEECCCCCE-EcC---cCCCCCCCCCCC
Confidence 66678999999976 432 233 49999864
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=22.79 E-value=51 Score=27.28 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=22.6
Q ss_pred cCCCcccceecccccc-ceeecccccceecccccC
Q 001092 1092 VSSDPFEVQVCRVCGL-LGYYNHKLKAGICSTCKN 1125 (1159)
Q Consensus 1092 ~~SD~~~~~vC~~cg~-~~~~~~~~~~~~C~~c~~ 1125 (1159)
-.|+...+..|+.||. -+..+...+..+|..|+-
T Consensus 4 ~~~~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred chhhccccccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 3566667778999986 233334555678999963
No 14
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.51 E-value=38 Score=28.41 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=17.9
Q ss_pred cceeccccccceeecccccceecccccCCCc
Q 001092 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNGDN 1128 (1159)
Q Consensus 1098 ~~~vC~~cg~~~~~~~~~~~~~C~~c~~~~~ 1128 (1159)
.+++|.+||..... ..|+.|+....
T Consensus 5 ~mr~C~~CgvYTLk------~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGLYTLK------EICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCCEESS------SBCSSSCSBCB
T ss_pred hceeCCCCCCEecc------ccCcCCCCcCC
Confidence 56789999965443 56999986543
No 15
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.03 E-value=48 Score=33.55 Aligned_cols=26 Identities=23% Similarity=0.671 Sum_probs=17.7
Q ss_pred cceeccccccceeecccccceecccccCC
Q 001092 1098 EVQVCRVCGLLGYYNHKLKAGICSTCKNG 1126 (1159)
Q Consensus 1098 ~~~vC~~cg~~~~~~~~~~~~~C~~c~~~ 1126 (1159)
..|+|..||-+... . -...|+.|+.+
T Consensus 137 ~~~~C~~CG~i~~~-~--~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD-E--APEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES-C--CCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCC-C--CCCCCCCCCCC
Confidence 57999999976432 1 11269999853
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.38 E-value=49 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=18.8
Q ss_pred ceecccccc-ceeecccccceecccccC
Q 001092 1099 VQVCRVCGL-LGYYNHKLKAGICSTCKN 1125 (1159)
Q Consensus 1099 ~~vC~~cg~-~~~~~~~~~~~~C~~c~~ 1125 (1159)
..+|..||. -+..+...+..+|..|+.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 457999987 444444555678999974
Done!