Citrus Sinensis ID: 001092
Local Sequence Feature Prediction
| Prediction and Method | Result |
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Function Prediction
Annotation transfered from Closely Related SWISS-PROT Entries 
| Annotation | Function Description | Confidence Level | Reference Protein |
| DNA-directed RNA polymerase III subunit RPC2 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. | probable | P22276 |
| DNA-directed RNA polymerase III subunit RPC2 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway. | probable | P59470 |
| DNA-directed RNA polymerase III subunit RPC2 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft (By similarity). Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts, such as Epstein-Barr virus-encoded RNAs (EBERs) induce type I interferon and NF- Kappa-B through the RIG-I pathway. | probable | Q9NW08 |
Prediction of Enzyme Commission Number
| EC Number | Description | Confidence Level | |||||||||
| 2.-.-.- | Transferases. | probable | |||||||||
| 2.7.-.- | Transferring phosphorous-containing groups. | probable | |||||||||
| 2.7.7.- | Nucleotidyltransferases. | probable | |||||||||
| 2.7.7.6 | DNA-directed RNA polymerase. | probable |
Spatial Structural Prediction
Structural Models Based on Templates
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Template: 3MLQ, chain A Confidence level:very confident Coverage over the Query: 43-148,173-196 View the alignment between query and template View the model in PyMOL |
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Template: 3QQC, chain A Confidence level:confident Coverage over the Query: 1096-1158 View the alignment between query and template View the model in PyMOL |
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Template: 3TBI, chain B Confidence level:confident Coverage over the Query: 778-804,818-891 View the alignment between query and template View the model in PyMOL |
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Template: 3MLQ, chain A Confidence level:confident Coverage over the Query: 364-432 View the alignment between query and template View the model in PyMOL |
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Template: 3LTI, chain A Confidence level:probable Coverage over the Query: 193-264 View the alignment between query and template View the model in PyMOL |
Templates for Structure Prediction
| ID | Alignment Graph | Confidence Level |
View Alignment and Template |
| Query | |||
| 3lu0, chain C | very confident | Alignment | Template Structure | |
| 3h0g, chain B | very confident | Alignment | Template Structure |