Your job contains 1 sequence.
>001094
MPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPG
KGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQ
MVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLL
SQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS
TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQ
PARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSK
ASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILA
DDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC
RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS
SRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRK
CPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA
KRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLK
TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV
KQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA
ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNS
LSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRH
SFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLL
EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL
LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE
TGGQQTRLTVDDLNYLFMV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001094
(1159 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 1442 5.1e-234 4
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 2221 3.3e-230 1
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 1229 1.7e-220 3
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 389 3.3e-139 5
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 484 3.4e-91 5
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 433 3.8e-87 5
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 429 1.9e-85 6
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 433 1.8e-83 5
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 344 4.9e-82 5
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 388 1.3e-81 7
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 328 7.5e-81 6
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 383 1.1e-80 5
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 427 4.0e-80 5
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 424 7.3e-80 7
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 424 3.7e-79 7
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 437 1.7e-75 5
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 313 8.3e-75 6
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 426 1.6e-74 6
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 417 4.1e-74 5
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 392 5.9e-74 7
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 427 6.4e-74 6
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 337 3.3e-72 5
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 290 2.0e-71 6
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 290 2.3e-71 6
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 297 2.7e-71 5
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 322 2.2e-70 6
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 305 2.0e-68 5
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 349 5.7e-68 4
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 341 2.1e-67 5
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 285 3.5e-67 6
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 297 2.1e-66 6
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 293 1.4e-65 6
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 297 1.6e-65 5
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 297 2.9e-65 5
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 332 3.9e-65 5
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 319 4.3e-64 4
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 319 4.3e-64 4
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 288 1.1e-63 6
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 367 1.4e-63 5
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 278 4.2e-62 5
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 442 3.4e-60 2
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 286 1.1e-59 4
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 322 1.6e-58 6
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 280 3.0e-57 7
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 332 3.4e-56 5
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 302 4.4e-53 5
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 351 4.8e-53 6
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 300 9.7e-49 4
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 286 1.2e-48 3
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 249 8.3e-48 5
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 249 8.3e-48 5
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 242 3.9e-46 7
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 242 6.5e-46 6
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 243 9.8e-46 6
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 238 1.0e-45 7
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 296 2.0e-45 3
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 296 2.0e-45 3
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 248 1.6e-44 5
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 245 3.4e-44 5
UNIPROTKB|D4A1K7 - symbol:Ttf2 "Protein Ttf2" species:101... 267 2.0e-42 4
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 242 6.4e-42 5
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 257 7.4e-42 3
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 332 8.3e-42 4
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 391 9.6e-40 4
TAIR|locus:2064786 - symbol:AT2G40770 species:3702 "Arabi... 232 1.1e-39 5
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 263 1.2e-39 4
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 236 1.6e-39 4
TIGR_CMR|BA_1804 - symbol:BA_1804 "helicase, putative" sp... 266 2.0e-39 5
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 237 2.7e-39 5
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 255 1.5e-38 5
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 258 1.7e-38 4
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 258 1.7e-38 4
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 273 1.2e-37 5
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 255 1.6e-37 5
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 257 2.9e-37 5
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 219 1.1e-36 4
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 304 1.1e-36 4
UNIPROTKB|Q71Z25 - symbol:LMOf2365_1665 "Helicase, Snf2 f... 272 1.8e-36 4
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 237 2.9e-36 4
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 286 3.4e-36 4
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 264 3.8e-36 6
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 278 4.7e-36 4
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 294 5.7e-36 4
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 293 6.6e-36 4
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 242 7.7e-36 4
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 248 8.6e-36 5
TAIR|locus:2051678 - symbol:ETL1 species:3702 "Arabidopsi... 300 1.2e-35 4
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 312 1.3e-35 5
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 240 3.6e-35 4
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 242 4.4e-35 5
POMBASE|SPAC144.05 - symbol:SPAC144.05 "ATP-dependent DNA... 197 5.8e-35 5
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 242 6.1e-35 5
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 229 1.3e-34 5
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 335 1.6e-34 5
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 227 1.9e-34 5
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 227 2.1e-34 5
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 241 2.3e-34 5
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 241 2.3e-34 5
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 241 2.3e-34 5
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 293 2.3e-34 4
WARNING: Descriptions of 476 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 1442 (512.7 bits), Expect = 5.1e-234, Sum P(4) = 5.1e-234
Identities = 324/616 (52%), Positives = 413/616 (67%)
Query: 318 RSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ 377
+SA + +A+ PVV+S++S+ S GG+K +++ E +I Q A+Q ++Q
Sbjct: 488 QSAIPHRPLAMKMPVVSSEYSTVSHN-------FNQSGGLKLQSNKENMIFQAALQDLTQ 540
Query: 378 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437
PN+EA PDGVL VPLLRHQRIALSWM QKETS CSGGILADDQGLGKT+STIALILK
Sbjct: 541 PNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILK 600
Query: 438 ERP-PSFRTEDDNKRQLETLNLDE-EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 495
ER P+ E+ K+++ L + E ++ +G + ++ +++ N + + V
Sbjct: 601 ERSKPAQACEESTKKEIFDLESETGECAPLKPSGRS---KHFEHSQLLSNENKVGG-DSV 656
Query: 496 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 555
+ GRPAAGTLVVCPTSV+RQWA+EL KVTS+ +LSVLVYHGSSRTKDP ELAK+DVV
Sbjct: 657 GKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVV 716
Query: 556 ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKG 615
+TT+SIVSMEVPKQPL + GSK+KK
Sbjct: 717 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKK-GSKKKK- 774
Query: 616 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 675
++ ++GPLAKV WFRVVLDEAQSIKN++TQVARACWGLRAKRRWCLSGTPIQN+I
Sbjct: 775 -----VEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSI 829
Query: 676 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 735
DDLYSYFRFL+YDP++ Y FCS IK PI++NPVKGY+KLQA+LKT+MLRRTKG+LLDG+
Sbjct: 830 DDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGK 889
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
PII+LPPK I L++VDFT EERDFYS+LE SR QF+EYA AGTVKQNYVNILLMLLRLR
Sbjct: 890 PIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLR 949
Query: 796 QACDHPLLVKGFDSNSLLRSSVEMAKK-LPQERQMYLLN-CLEAS----LAICG--ICND 847
QACDHPLLV G + + SSV +AKK + + + + C +A ++CG C
Sbjct: 950 QACDHPLLVNG-EYSFTWESSVGLAKKQIQSDASLAICGICNDAPEDAVASVCGHVFCKQ 1008
Query: 848 PPEDAVVSICGHVFCNQCICE-RLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQP 906
+ + H C C RLT TR + ++ + +AT +NSLS
Sbjct: 1009 CIYERLTGDSNH--CPFANCNVRLTISSLSSKTR---LDDAMPDMQERAT-SNSLSPCSD 1062
Query: 907 GQEIPTDYSDSKLVEA 922
+++P Y SK+ A
Sbjct: 1063 -EDLP--YGSSKIKAA 1075
Score = 697 (250.4 bits), Expect = 5.1e-234, Sum P(4) = 5.1e-234
Identities = 139/164 (84%), Positives = 152/164 (92%)
Query: 996 SID-SIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP 1054
S+D IK+ GEKAIVFSQWTKML+LLEASL S IQYRRLDGTMSV ARDKAV+DFNTLP
Sbjct: 1114 SVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLP 1173
Query: 1055 EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
EV+VMIMSLKAASLGLNMVAACHVL+LDLWWNPTTEDQAIDRAHRIGQTRPV+V+R TVK
Sbjct: 1174 EVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVK 1233
Query: 1115 NTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1158
+TVEDRILALQQKKR MVASAFGEDE G +Q+ LTV+DL+YLFM
Sbjct: 1234 DTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLFM 1277
Score = 317 (116.6 bits), Expect = 3.8e-31, Sum P(3) = 3.8e-31
Identities = 90/254 (35%), Positives = 136/254 (53%)
Query: 815 SSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADD 874
SSV +AKK Q +ASLAICGICND PEDAV S+CGHVFC QCI ERLT D
Sbjct: 968 SSVGLAKKQIQS---------DASLAICGICNDAPEDAVASVCGHVFCKQCIYERLTGDS 1018
Query: 875 NQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSK 934
N CP NC +RL++SS+ SK L++++ Q + + S + S E + Y SSK
Sbjct: 1019 NHCPFANCNVRLTISSLSSKTRLDDAMPDMQ-------ERATSNSLSPCSDEDLPYGSSK 1071
Query: 935 IKAALEVLQSLAKPRGNTVTNH-SLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAA 993
IKAALE+LQSL K T +N S ++G P N+ D ++ E + +
Sbjct: 1072 IKAALEILQSLPKAHDLTDSNQISENREYSGLSITPV-KNEGMSVDVPIKVAGEKAIVFS 1130
Query: 994 KCSIDSIKLGGEKAIVFS--QWTKMLDLLEASLKDSSIQ-YRRL-DGTMSVFARDKAVKD 1049
+ + + L E ++V S Q+ ++ + + +D ++Q + L + T+ + + A
Sbjct: 1131 QWT-KMLNLL-EASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAASLG 1188
Query: 1050 FNTLPEVSVMIMSL 1063
N + V+++ L
Sbjct: 1189 LNMVAACHVLMLDL 1202
Score = 105 (42.0 bits), Expect = 5.1e-234, Sum P(4) = 5.1e-234
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 239 PSTLNKKELDGVKEDMEAE-IKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILED 297
P T N + D + + E I+ R + S S ES+QS+SS+C S DD+ D+CI+E
Sbjct: 426 PVTQNNEYKDFQIQQGDREYIQPRGIDSQFSNASFESVQSHSSECISDSDDDSDVCIIEP 485
Query: 298 ISQPARSNQSLVLGKTLSMNRSACSNHS 325
Q A ++ L + + + + +H+
Sbjct: 486 YGQSAIPHRPLAMKMPVVSSEYSTVSHN 513
Score = 66 (28.3 bits), Expect = 5.1e-234, Sum P(4) = 5.1e-234
Identities = 47/200 (23%), Positives = 78/200 (39%)
Query: 3 CYINTGDTIFGD--PSS---FNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQG 57
CY NT T D P+S F F+ + EE D E + + +S ++ + G
Sbjct: 210 CY-NTSGTSLSDHTPNSVQNFAFEFFPNKEEAVN---DVESGVSESQSDGASRMIFDRHG 265
Query: 58 GPGKGSMLKVPAIDYLDAKR---QCEDSKNGLPI----YGNSLSNITLGDGKRSAQPCTY 110
GS+ + P ID+ A+ + E + + P Y + S++ D R P Y
Sbjct: 266 RVDNGSLERKPPIDFSSARGISFKFESNPSVSPACVKPYNSFDSHLADSDLDR---PNNY 322
Query: 111 SHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAV--GRNSSYHDGCNSFPFK-- 166
S S V K E + +S+V D+A G + + G +S
Sbjct: 323 SCSFQDNKTVHVKVKPEAESEKV-VYSSVPGEFSVRDDAYLSGETNRWWSGASSSAVSYQ 381
Query: 167 ---DSGQSFIGLSPSLLSQN 183
+ G S++ +L SQ+
Sbjct: 382 TDIEKGYSYMAPQTALPSQD 401
Score = 53 (23.7 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 414 CSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL--D 471
C GG +D I T+ IL E+P S +N + + + DE + +NG +
Sbjct: 19 CDGGFEFEDDDETIDIETLYRILDEKPDSAEGSQENLSPVGS-SADELKDSQLLNGSFDE 77
Query: 472 LVKQES 477
VK E+
Sbjct: 78 HVKMEA 83
Score = 41 (19.5 bits), Expect = 2.2e-231, Sum P(4) = 2.2e-231
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 136 WSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQ 170
WS S S + + SY + P +DSG+
Sbjct: 370 WSGASSSAVSYQTDIEKGYSYMAPQTALPSQDSGK 404
Score = 37 (18.1 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 476 ESDYCRVVPNGSSA 489
+SD C + P G SA
Sbjct: 477 DSDVCIIEPYGQSA 490
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 2221 (786.9 bits), Expect = 3.3e-230, P = 3.3e-230
Identities = 478/853 (56%), Positives = 595/853 (69%)
Query: 325 SVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASA 384
SVA G S + SD P + G+G ++ +DERLI Q A+Q ++QP +E
Sbjct: 163 SVAHGTSASPSHFNGLSD----P-MHRNGIGEERNSENDERLIYQAALQELNQPKSEVDL 217
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE-RPPSF 443
P G+L+VPL++HQ+IAL+WM QKET+SLHC GGILADDQGLGKT+STIALILK+
Sbjct: 218 PAGLLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKL 277
Query: 444 RTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKG--- 500
++++ ++ E L+LD +D N + K ES NGS + +++AKG
Sbjct: 278 KSKNSGNQEAEALDLDADDES--ENAFE--KPESK----ASNGSGVNGDSGIKKAKGEEA 329
Query: 501 ----------RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 550
RPAAGTL+VCP SV+RQWA EL KVT + LSVL+YHG +RTKDP ELA
Sbjct: 330 STSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELA 389
Query: 551 KFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGS 610
K+DVV+TTY+IVS EVPKQPL L + S
Sbjct: 390 KYDVVMTTYAIVSNEVPKQPL-VDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKK--S 446
Query: 611 KQKKGPD--GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSG 668
K+KKG + G D +G LAKVGWFRVVLDEAQ+IKNHRTQVARAC GLRAKRRWCLSG
Sbjct: 447 KKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSG 506
Query: 669 TPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 728
TPIQN IDDLYSYFRFL+YDP+AVYKSFC IK PIS+N ++GYKKLQAVL+ IMLRRTK
Sbjct: 507 TPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTK 566
Query: 729 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 788
GTLLDG+PIINLPPK I L QVDF+ EER FY +LE +SR QFK YAAAGT+ QNY NIL
Sbjct: 567 GTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANIL 626
Query: 789 LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDP 848
LMLLRLRQACDHP LVK ++S+S+ + S E KKLP+E + LL+ LE+S IC +C+DP
Sbjct: 627 LMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVKKLPKEDLVSLLSRLESS-PICCVCHDP 685
Query: 849 PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQ 908
PED VV++CGH+FC QC+ + +T D++ CP C+ +L+ VFSK+TL + ++ G
Sbjct: 686 PEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQLAHDVVFSKSTLRSCVAD-DLGC 744
Query: 909 EIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICC 968
D S K V + ++SSKIKA L++LQSL+ N T++S + NG +
Sbjct: 745 SSSEDNSHDKSV----FQNGEFSSSKIKAVLDILQSLS----NQGTSNSTQ---NGQMA- 792
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKD 1026
S+ D D+ D++ I K S+ S G K I+FSQWT MLDL+E SL +
Sbjct: 793 ---SSSQQPNDD-DDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTGMLDLVELSLIE 848
Query: 1027 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086
+SI++RRLDGTMS+ ARD+AVK+F+ P+V VMIMSLKA +LGLNM+AACHV+LLDLWWN
Sbjct: 849 NSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWN 908
Query: 1087 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1146
PTTEDQAIDRAHRIGQTRPV+V R+T+KNTVEDRILALQ++KR+MVASAFGED G T
Sbjct: 909 PTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSAT 968
Query: 1147 RLTVDDLNYLFMV 1159
RLTVDDL YLFMV
Sbjct: 969 RLTVDDLKYLFMV 981
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 1229 (437.7 bits), Expect = 1.7e-220, Sum P(3) = 1.7e-220
Identities = 252/475 (53%), Positives = 321/475 (67%)
Query: 501 RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 560
RPAAGTL+VCP SV+RQWA EL KV+ + LSVLVYHGS+RTKDP ELA++DVV+TTY+
Sbjct: 411 RPAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYA 470
Query: 561 IVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKGPDGLL 620
IV+ E P + L L + + +K +
Sbjct: 471 IVTNEAPNKFL-VDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTS 529
Query: 621 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 680
+ GPL KVGWFR+VLDEAQ+IKN+RTQ+AR+C LRAKRRWCLSGTPIQN IDDLYS
Sbjct: 530 SEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYS 589
Query: 681 YFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINL 740
YFRFLRYDP+AVYKSF S IKVPIS+N +GYKKLQAVL+ IMLRRTKGTLLDG+PIINL
Sbjct: 590 YFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINL 649
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 800
PPKV+ L QVDF+ ER FY +LE +SR QFK YA AGT+ QNY NILL+LLRLRQACDH
Sbjct: 650 PPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDH 709
Query: 801 PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHV 860
P LVK ++S+ + + S ++LP+E + L+N LE+S AIC CN+PPE VV++CGH+
Sbjct: 710 PQLVKRYNSDPVGKVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHI 769
Query: 861 FCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV 920
FC +C+ E +T D+N CP CK +L+ VFS+++L N S + D +
Sbjct: 770 FCYECVLEYITGDENTCPVPRCKQQLARDVVFSESSLRNCTSDDSGCSSSHDNGLDRSVF 829
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDL 975
+ + SSKIKA L++LQSL++P + +S +H S P D +D+
Sbjct: 830 QKRD-----FCSSKIKAVLDILQSLSQPD----SPNSAQHGQMPSSSRPYDDDDV 875
Score = 630 (226.8 bits), Expect = 1.7e-220, Sum P(3) = 1.7e-220
Identities = 136/228 (59%), Positives = 168/228 (73%)
Query: 932 SSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKI 991
SSKIKA L++LQSL++P + +S +H S P D +D+ T+ E +
Sbjct: 836 SSKIKAVLDILQSLSQPD----SPNSAQHGQMPSSSRPYDDDDV----TIV------EPM 881
Query: 992 AAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFN 1051
S S G K I+FSQWT MLDL+E + +S I++RRLDGTMS+ ARD+AVK+F+
Sbjct: 882 RLHSSSPS--QGAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFS 939
Query: 1052 TLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRL 1111
P+V VM+MSLKA +LGLNMVAACHV+LLDLWWNPTTEDQAIDRAHRIGQTRPV+V R+
Sbjct: 940 KKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRI 999
Query: 1112 TVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159
T+K+TVEDRIL LQ++KR MVASAFGE+ G TRLTVDDL YLFMV
Sbjct: 1000 TIKDTVEDRILKLQEEKRTMVASAFGEEHGGSSATRLTVDDLKYLFMV 1047
Score = 310 (114.2 bits), Expect = 1.7e-220, Sum P(3) = 1.7e-220
Identities = 63/116 (54%), Positives = 85/116 (73%)
Query: 350 PLTGLGGMKSKA--SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQK 407
P+ GG + + +DERL+ Q A+Q ++QP E+ P G L+VPL+RHQ+IAL+WM QK
Sbjct: 236 PMHRFGGGEDRNPDNDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQK 295
Query: 408 ETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTEDDNKRQLETLNLDEED 462
ETSS +C GGILADDQGLGKT+STIALILK++ S ++E K++ E L LD +D
Sbjct: 296 ETSSFNCPGGILADDQGLGKTVSTIALILKQKIVSQLKSESSCKQETEALVLDADD 351
Score = 42 (19.8 bits), Expect = 3.2e-192, Sum P(3) = 3.2e-192
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 247 LDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILED 297
LD E A+ ++ S LK+S S S S C + +D D+ ED
Sbjct: 347 LDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDSSDMEKAED 397
Score = 42 (19.8 bits), Expect = 8.5e-58, Sum P(3) = 8.5e-58
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 429 ISTIALILKERPPSFRTEDDNKRQLET 455
++T A++ E P F ++D + T
Sbjct: 466 VTTYAIVTNEAPNKFLVDEDENDEKNT 492
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 389 (142.0 bits), Expect = 3.3e-139, Sum P(5) = 3.3e-139
Identities = 74/113 (65%), Positives = 88/113 (77%)
Query: 617 DGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 675
DG L+ G L +V W RVVLDEA +IKNHRT +A+AC+ LRAKRRWCL+GTPI+N +
Sbjct: 196 DGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKV 255
Query: 676 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 728
DDLYSYFRFLRY P+A+ SF IK PI K P+ GYKKLQA+L+ IMLRRTK
Sbjct: 256 DDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTK 308
Score = 353 (129.3 bits), Expect = 3.3e-139, Sum P(5) = 3.3e-139
Identities = 67/184 (36%), Positives = 112/184 (60%)
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
IML++ +E FY +LE+NSR +F+EYAA GT+ ++ +L+MLLRLRQAC+HP LV
Sbjct: 302 IMLRRT----KEWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLV 357
Query: 805 KGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 864
G+ + R + + P+E + L+ L+ S C +C+DPP+D VV++CGHVFC +
Sbjct: 358 NGYSHSDTTRKMSDGVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYE 417
Query: 865 CICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL--VEA 922
C+ + D+N CP NC +L VF+++ + + ++ ++ + ++ +E
Sbjct: 418 CVSVNINGDNNTCPALNCHSQLKHDVVFTESAVRSCINDYDDPEDKNALVASRRVYFIEN 477
Query: 923 PSCE 926
PSC+
Sbjct: 478 PSCD 481
Score = 332 (121.9 bits), Expect = 3.3e-139, Sum P(5) = 3.3e-139
Identities = 69/116 (59%), Positives = 86/116 (74%)
Query: 1042 ARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1101
+R KD + V M+MSLKA +LGLNMVAA HV+LLDLWWNPTTEDQAIDRAHRIG
Sbjct: 493 SRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIG 552
Query: 1102 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE-------DETGGQQTRLTV 1150
QTR V+V R+ +KNTVE+RIL L ++KR +VASA GE D T +++R++V
Sbjct: 553 QTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGEKNWQKFCDSTNTRRSRISV 608
Score = 257 (95.5 bits), Expect = 3.3e-139, Sum P(5) = 3.3e-139
Identities = 52/90 (57%), Positives = 64/90 (71%)
Query: 363 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 422
+ER+I Q A+Q + QP E P GVL VPL+RHQ+IAL+WM +KE S HC GGILADD
Sbjct: 23 NERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADD 82
Query: 423 QGLGKTISTIALILKERPPSFRTEDDNKRQ 452
QGLGKTISTI+LIL ++ S + K Q
Sbjct: 83 QGLGKTISTISLILLQKLKSQSKQRKRKGQ 112
Score = 242 (90.2 bits), Expect = 3.3e-139, Sum P(5) = 3.3e-139
Identities = 45/82 (54%), Positives = 64/82 (78%)
Query: 490 KSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 549
KS + + KG+ + GTL+VCP SV++QWA E++ KV+ + LSVLV+HGS RTKDP E+
Sbjct: 101 KSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEI 160
Query: 550 AKFDVVITTYSIVSMEVPKQPL 571
A +DVV+TTY+IV+ EVP+ P+
Sbjct: 161 AIYDVVMTTYAIVTNEVPQNPM 182
Score = 39 (18.8 bits), Expect = 1.5e-108, Sum P(5) = 1.5e-108
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 928 VWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHS 961
+W+N + A++ + + R TVT +++++
Sbjct: 534 LWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNT 567
Score = 39 (18.8 bits), Expect = 1.4e-68, Sum P(4) = 1.4e-68
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 956 HSLRHSFNGSICCPGDSNDLHGGDTLDNI 984
+++ +SF+ I P D LHG L I
Sbjct: 270 YAMCNSFHQRIKAPIDKKPLHGYKKLQAI 298
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 484 (175.4 bits), Expect = 3.4e-91, Sum P(5) = 3.4e-91
Identities = 104/304 (34%), Positives = 172/304 (56%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
P + W+RV+LDEAQ+IKN T AR C L + RWCLSGTP+QN +++ YS +FLR
Sbjct: 527 PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLR 586
Query: 687 YDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
P++ + SF +P+S N K+ + +LK ++LRRTK T +DG+PI+ LPPK
Sbjct: 587 IKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKT 646
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
+ + D + E +FY+ L+ ++ Q ++Y GT+ +Y ++L++LLRLRQAC HP L+
Sbjct: 647 AVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLI 706
Query: 805 KGFDSNSLLRSSVEMAKKLPQERQMY--LLNCLEASLAI-CGICNDPPEDAVVSI-CGHV 860
++ S + AK Q+Y +N L+ + C +C D + ++ + CGH
Sbjct: 707 VAREAAVDDNDSFQ-AKNRAIYNQIYPEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHF 765
Query: 861 FCNQCICERLTADDN---QCPTRNCKIRLSLSSVF--SKATLNNSLSQRQPGQEIPTDYS 915
C +C+ +T+ ++ Q N + S+ + ++ L+ +L +R G D +
Sbjct: 766 LCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVD-A 824
Query: 916 DSKL 919
D+KL
Sbjct: 825 DNKL 828
Score = 352 (129.0 bits), Expect = 3.4e-91, Sum P(5) = 3.4e-91
Identities = 66/153 (43%), Positives = 104/153 (67%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
+K ++FSQ+ L+L + I+Y G +S R++A+ +F P V V+++SLK
Sbjct: 884 DKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLK 943
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A ++GLN+ A HV++LD +WNP E+QA+DRAHRIGQ +PV++LR+ NT+E+R+LAL
Sbjct: 944 AGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLAL 1003
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
Q +KRE++ SA GE + +RL +L++LF
Sbjct: 1004 QDRKRELIDSALGEKGLR-EISRLNTKELSFLF 1035
Score = 136 (52.9 bits), Expect = 3.4e-91, Sum P(5) = 3.4e-91
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 364 ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 423
E L + Q ++ P P G++ L+ HQ+ L W+ + E SS GGILADD
Sbjct: 362 EELFKDLDEQLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESSK--KGGILADDM 418
Query: 424 GLGKTISTIALILKERPPSFRT 445
GLGKT+ +AL++ RPP ++
Sbjct: 419 GLGKTVQALALLVT-RPPESKS 439
Score = 124 (48.7 bits), Expect = 3.4e-91, Sum P(5) = 3.4e-91
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAKFDVVITTYSIVSM 564
TL++ P S+L+QW E+ K+ +V ++HGSS+ E L +D+V+TTY++++
Sbjct: 443 TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAY 502
Query: 565 E 565
E
Sbjct: 503 E 503
Score = 44 (20.5 bits), Expect = 3.3e-11, Sum P(4) = 3.3e-11
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 988 NEKIAAKCSIDSIKLGGEKAI---VFSQWTKMLDLLEASLK 1025
NE I+ KCS+ + E+ + +F +++ M +++A K
Sbjct: 787 NENISPKCSVCEEYIDTERLLSYALFRRYSGMAPIVDADNK 827
Score = 43 (20.2 bits), Expect = 5.3e-44, Sum P(5) = 5.3e-44
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 883 KIRL-SLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV 941
K+R ++S + K +N L RQ G +I TD P W S+KI+ AL
Sbjct: 827 KLRTENISELLPKQ-YSNILENRQMGMKIFTD---------PKH---WTTSTKIEKALNA 873
Query: 942 LQSLAK 947
++ + K
Sbjct: 874 VKEIIK 879
Score = 42 (19.8 bits), Expect = 2.0e-81, Sum P(5) = 2.0e-81
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 444 RTEDDNKRQLETL--NLDEE 461
+ +DD ++QLE L +LDE+
Sbjct: 352 KVQDDQQQQLEELFKDLDEQ 371
Score = 38 (18.4 bits), Expect = 3.4e-91, Sum P(5) = 3.4e-91
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 73 LDAKRQCEDSKNGLPIYGNSLSN 95
LD K +KN P Y +S S+
Sbjct: 20 LDDKHNIGFNKNNTPDYSSSASS 42
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 433 (157.5 bits), Expect = 3.8e-87, Sum P(5) = 3.8e-87
Identities = 94/247 (38%), Positives = 139/247 (56%)
Query: 626 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685
GP +K W+RV++DEAQ IKN TQ A AC L RWC+SGTP+ N +++L+S +FL
Sbjct: 615 GPTSK--WYRVIIDEAQCIKNRATQSAIACCRLNTTYRWCMSGTPMMNNVEELHSLLKFL 672
Query: 686 RYDPFAVYKSFCSMIKVPISKN----PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 741
R P+A F P+ N K +L+ +LK ++LRRTK + +DG+PI ++P
Sbjct: 673 RIRPYANLDRFKRDFSAPLKTNNKHLQEKAMTQLRILLKAVLLRRTKHSKIDGKPIFDIP 732
Query: 742 PKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
P+ F+++E + Y LE ++ QF Y AGTV +NY NIL++LLRLRQAC HP
Sbjct: 733 PRFSEKVHAVFSEDELELYKALEAKTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHP 792
Query: 802 LLVKGFDSNSLLRSS--VEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSI-CG 858
L+ F S L +S V+ Q + + C +C D ++ ++ CG
Sbjct: 793 HLITDF-SVKLNEASEGVDFIANAEQFSNEVVARLRDNENLECPVCIDAVDNPIIFFPCG 851
Query: 859 HVFCNQC 865
H C++C
Sbjct: 852 HGTCSEC 858
Score = 371 (135.7 bits), Expect = 3.8e-87, Sum P(5) = 3.8e-87
Identities = 78/154 (50%), Positives = 102/154 (66%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
EK I+FSQ+T +LDLLE + +YRR DG+M R+ AV DF P VM++SLK
Sbjct: 1021 EKIIIFSQFTSLLDLLEIPIAREGHRYRRYDGSMKPADRNSAVLDFTDDPSCKVMLVSLK 1080
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A + GLN+VAA HV++ D +WNP E+QA+DRAHRIGQ R V V R+ V TVEDRI+ L
Sbjct: 1081 AGNSGLNLVAANHVIIFDPFWNPYVEEQAVDRAHRIGQLREVHVHRILVPETVEDRIIEL 1140
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1158
Q KKR ++ A E E+ RL+ +L YLF+
Sbjct: 1141 QDKKRAIIDGALDEKESKNI-ARLSTRELGYLFV 1173
Score = 141 (54.7 bits), Expect = 3.8e-87, Sum P(5) = 3.8e-87
Identities = 35/71 (49%), Positives = 43/71 (60%)
Query: 377 QPNAEASAPD-----GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTIST 431
+P+A+ SA D L PLL HQ++ L+WM KE GGILADD GLGKTI
Sbjct: 450 RPDADLSAKDREGTPAALKYPLLDHQKLGLAWMRSKEECDQ--KGGILADDMGLGKTIQA 507
Query: 432 IALILKERPPS 442
IAL++ RP S
Sbjct: 508 IALMVS-RPSS 517
Score = 109 (43.4 bits), Expect = 3.8e-87, Sum P(5) = 3.8e-87
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
TL++ P ++++QW E+ ++ L V + HG +L K+DVV+TT+ +++ E
Sbjct: 524 TLIIAPVALMQQWKREIEKMLSPGHRLQVYILHGDKGRTSFSDLKKYDVVLTTFGMLASE 583
Query: 566 VPK 568
+ +
Sbjct: 584 LKR 586
Score = 53 (23.7 bits), Expect = 3.8e-87, Sum P(5) = 3.8e-87
Identities = 37/120 (30%), Positives = 50/120 (41%)
Query: 210 DGSSSRSPIDGRHLS-LNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLL 268
DG S +D L L L+G Q Q ++ +KE E E + A HL+
Sbjct: 169 DGLDSEFDVDDDILGILGLDG--QDMRALQEE--QRRAEQWLKERKEQERRDAEFARHLM 224
Query: 269 KLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKT---LSMNRSACSNHS 325
SP S Q+ S ++ P L I Q + SN SL LG LS S +NH+
Sbjct: 225 SASP-SAQTLSYISRAE-PPTPTRENLPSIPQFSSSN-SLFLGTRPAGLSAAPSLNANHA 281
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 429 (156.1 bits), Expect = 1.9e-85, Sum P(6) = 1.9e-85
Identities = 96/283 (33%), Positives = 157/283 (55%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
++ W+R+VLDEA +IK+ +TQ A+A + L + RWCL+GTP+QN ++DLYS FL +P
Sbjct: 813 RIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEP 872
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLK 748
+ + + +I+ P +G K ++A+L+ +MLRRTK T +G I+ LPP + +
Sbjct: 873 WCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVI 932
Query: 749 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG-- 806
+ + ++ ERDFY+ L S+ QF ++ A G V NY NIL +LLRLRQ C+HP LV
Sbjct: 933 ECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRA 992
Query: 807 -----FDSNSLLRSSVE-----MAKKLPQERQM--YLLNCLEASLAICGICNDPPEDAVV 854
D +SL R ++ +++ P + + + + + C IC + +D V+
Sbjct: 993 DSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVL 1052
Query: 855 SICGHVFCNQCICERLTADD-NQCPTRNCKIRLSLSSVFSKAT 896
+ C H C +C+ + CP C+ L + + S T
Sbjct: 1053 TPCAHRMCRECLLTSWRSPSCGLCPI--CRTILKRTELISCPT 1093
Score = 379 (138.5 bits), Expect = 1.9e-85, Sum P(6) = 1.9e-85
Identities = 85/196 (43%), Positives = 122/196 (62%)
Query: 966 ICCPGDSNDLHGGDTLDNISDENEKIAA--KCSIDSIKLGG--EKAIVFSQWTKMLDLLE 1021
I CP DS + D + N E+ K++ KC ++ IK G EK+IVFSQWT LDLLE
Sbjct: 1089 ISCPTDS--IFRVDVVKNWK-ESSKVSELLKC-LEKIKKSGSGEKSIVFSQWTSFLDLLE 1144
Query: 1022 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1081
L+ ++ R DG ++ R+K +K+FN + ++++MSLKA +GLN+ AA V L+
Sbjct: 1145 IPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLM 1204
Query: 1082 DLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1141
D WWNP E+QAI R HRIGQ R V V R VK+TVE+R+ +Q +K+ M+A A ++E
Sbjct: 1205 DPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEV 1264
Query: 1142 GGQQTRLTVDDLNYLF 1157
+ RL ++L LF
Sbjct: 1265 --RSARL--EELKMLF 1276
Score = 143 (55.4 bits), Expect = 1.9e-85, Sum P(6) = 1.9e-85
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 497 QAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVI 556
+AKG GTL++CP ++L QW +EL + ++SVLVY+G RT D +A DVV+
Sbjct: 738 KAKG----GTLIICPMALLSQWKDELETH-SKPDTVSVLVYYGGDRTHDAKAIASHDVVL 792
Query: 557 TTYSIVS 563
TTY +++
Sbjct: 793 TTYGVLT 799
Score = 92 (37.4 bits), Expect = 1.9e-85, Sum P(6) = 1.9e-85
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 464
+Q T++ GGILAD GLGKT+ TIALIL RP E+++ + +N D+ N
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALILA-RPGRGNPENEDVLVAD-VNADKR-NR 727
Query: 465 IQVN-GLDLVKQESDYCRVVP 484
+++ L VK + + P
Sbjct: 728 KEIHMALTTVKAKGGTLIICP 748
Score = 53 (23.7 bits), Expect = 1.9e-85, Sum P(6) = 1.9e-85
Identities = 37/140 (26%), Positives = 59/140 (42%)
Query: 175 LSPSLLSQNQVVHAKEEHEDLILESKRARFCQEI-----CDGSSSRSPIDGRHLSLNLNG 229
+ P LL +N VV AKEE E++I++S + + CD + +D NL
Sbjct: 142 VEPELLVENLVV-AKEE-EEMIVDSIEDSVVEIVSTASGCDCNVKVEVVDPELCVDNLVV 199
Query: 230 SRQYFPYAQPSTLNKKELDGVKEDMEA-EIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 288
++ A + E D E ++K + KL +S+ N + K V
Sbjct: 200 VKEEEMIADSIAESVVETVSRGLDYECVDVKVKEEPDLGTKLEEDSVFPNVLEKKDEV-- 257
Query: 289 EPDICILEDISQPARSNQSL 308
I +LED QP+ N+ L
Sbjct: 258 ---IKVLED--QPSEINKKL 272
Score = 40 (19.1 bits), Expect = 1.9e-85, Sum P(6) = 1.9e-85
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 381 EASAPDGVLAVPLLRHQRIALSWMVQKE 408
E AP L L +Q+ AL WM + E
Sbjct: 605 EMEAPS-TLTCNLRPYQKQALYWMSESE 631
Score = 40 (19.1 bits), Expect = 2.7e-29, Sum P(4) = 2.7e-29
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 422 DQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCR 481
+ G + + I IL RP R + + + +L L+ +QV + + E D+
Sbjct: 888 ENGDPRGLKLIKAIL--RPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYT 945
Query: 482 VVPNGSSAKSFNFVEQAK 499
+ S + FV Q K
Sbjct: 946 ALFKRSKVQFDQFVAQGK 963
Score = 39 (18.8 bits), Expect = 2.4e-50, Sum P(6) = 2.4e-50
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 929 WYNSSKIKAALEVLQSLAK 947
W SSK+ L+ L+ + K
Sbjct: 1105 WKESSKVSELLKCLEKIKK 1123
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 433 (157.5 bits), Expect = 1.8e-83, Sum P(5) = 1.8e-83
Identities = 92/263 (34%), Positives = 148/263 (56%)
Query: 625 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 684
+ PL V W RVVLDE ++N ++A L+++RRW LSGTPIQN++ DL+ F
Sbjct: 483 SSPLHNVKWLRVVLDEGHVVRNPNALQSKAVLELQSERRWILSGTPIQNSLKDLFMLLSF 542
Query: 685 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
L+ PF V + + +I+ P++ G K LQA++K I LRRTK + + G ++ LP +
Sbjct: 543 LKLKPFDVKEWWSRIIQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVGGRTLVQLPERR 602
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
+ ++ V + ER+ Y +++ ++ Y GT NY ++L +L+RLRQ C HP LV
Sbjct: 603 VFVQYVTLSGMEREKYERVKGEGKNIVGRYFQEGTFMANYADVLTILMRLRQCCCHPSLV 662
Query: 805 KGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 864
+ + + + E+ ++L Q+ + +LN S C IC D V++ C HVFC
Sbjct: 663 GNYTAADVPGTPSELRERLIQKITL-VLN--SGSDEECAICLDSLRQPVITYCAHVFCRP 719
Query: 865 CICERLTADDNQ--CPTRNCKIR 885
CICE + ++ Q CP +I+
Sbjct: 720 CICEVIRSEKEQAKCPLCRAQIK 742
Score = 330 (121.2 bits), Expect = 1.8e-83, Sum P(5) = 1.8e-83
Identities = 73/195 (37%), Positives = 123/195 (63%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE----KAIVFSQWTKMLDLLEASL 1024
PG+ + DT +N ++ +A ++ +KL E K++V SQ+T LD+LE +L
Sbjct: 750 PGEQAETRS-DTGENWRSSSKALALMSNL--LKLRNEDPTVKSMVVSQFTGFLDVLEVAL 806
Query: 1025 KDSSIQYRRLDGTMSVFARDKAVKDF-NTLP-EVSVMIMSLKAASLGLNMVAACHVLLLD 1082
++ + RLDG++ AR KA++DF ++ P ++M++SLKA +GLN+ AA V ++D
Sbjct: 807 REYGFSFTRLDGSLIQRARAKAIEDFQDSTPGSPTIMLLSLKAGGVGLNLTAASQVFVMD 866
Query: 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG-EDET 1141
WNP EDQ +DR HR+GQ+R V + + VK++VE+ ++ +Q+KK+E+V AFG ++
Sbjct: 867 PAWNPAAEDQCVDRCHRLGQSRDVVITKFIVKDSVEENMVKIQKKKQELVDKAFGVKNSQ 926
Query: 1142 GGQQTRLTVDDLNYL 1156
+Q R +DD+ L
Sbjct: 927 DAKQAR--IDDIRAL 939
Score = 141 (54.7 bits), Expect = 1.8e-83, Sum P(5) = 1.8e-83
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 476 ESDYCRVVPNGSSAKSFNFVEQ-AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 534
E +VVP+ K + + + G A TL+VCP SVL W ++ + + ++ V
Sbjct: 387 ECSSSQVVPSKKCVKKSSVPSEISAGSVARATLIVCPLSVLSNWLDQFEQHIRTDVTVKV 446
Query: 535 LVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
+Y+GS R + L++ DVV+TTY+++S +
Sbjct: 447 YLYYGSERNRSVSLLSEQDVVLTTYNVLSSD 477
Score = 87 (35.7 bits), Expect = 1.8e-83, Sum P(5) = 1.8e-83
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILADD GLGKT++TIALI+
Sbjct: 275 GGILADDMGLGKTLTTIALIV 295
Score = 70 (29.7 bits), Expect = 1.8e-83, Sum P(5) = 1.8e-83
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 352 TGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSS 411
T L + A + + + + + P + PLL HQ+ ALSWM +E S+
Sbjct: 185 TKLSAIPLSAEELKNAFDKLFDDLMEDKTKEMEPAEAVCTPLLSHQKQALSWMSSRENSN 244
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 344 (126.2 bits), Expect = 4.9e-82, Sum P(5) = 4.9e-82
Identities = 74/158 (46%), Positives = 101/158 (63%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
G KAIVFSQ+T LDL+ +L + +L G+M++ ARD A+ F P+ V +MS
Sbjct: 679 GSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMS 738
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LKA + LN+ A HV ++D WWNP E QA DR HRIGQ +P+ V+R ++NTVE+RIL
Sbjct: 739 LKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERIL 798
Query: 1123 ALQQKKREMVASAFGEDETGGQQT---RLTVDDLNYLF 1157
LQ KK+E+V F E GG Q +LT +D+ +LF
Sbjct: 799 RLQ-KKKELV---F-EGTVGGSQEAIGKLTEEDMRFLF 831
Score = 242 (90.2 bits), Expect = 4.9e-82, Sum P(5) = 4.9e-82
Identities = 63/164 (38%), Positives = 87/164 (53%)
Query: 718 VLKTIMLRRTK-GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA 776
VLK I+LRRTK G D + LPP++I L++ +E D+Y L NS+ +F Y
Sbjct: 474 VLKDILLRRTKLGRAAD----LALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIE 529
Query: 777 AGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLE 836
AGT+ NY +I +L RLRQA DHP LV + ++S +++ K QE
Sbjct: 530 AGTLMNNYAHIFDLLTRLRQAVDHPYLVV-YSNSSGANANLVDENKSEQE---------- 578
Query: 837 ASLAICGICNDPPEDAVVSICGHVFCNQCICE-RLTADDNQCPT 879
CG+C+DP ED VV+ C HVFC C+ + CPT
Sbjct: 579 -----CGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPT 617
Score = 179 (68.1 bits), Expect = 4.9e-82, Sum P(5) = 4.9e-82
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L V W R++LDEA IK R+ ARA + L A RW LSGTP+QN + +LYS RFL+
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Query: 688 DPFAVYKSFC 697
P++ Y FC
Sbjct: 409 RPYSYY--FC 416
Score = 153 (58.9 bits), Expect = 4.9e-82, Sum P(5) = 4.9e-82
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 495 VEQAKGRPAAG-TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 553
V++A+ AAG TLV+CP + QW E+ + TS GS VLVYHG+ R K+ E +D
Sbjct: 184 VDRAQFGEAAGCTLVLCPLVAVSQWLNEIA-RFTSPGSTKVLVYHGAKRAKNIKEFMNYD 242
Query: 554 VVITTYSIVSME 565
V+TTYS V E
Sbjct: 243 FVLTTYSTVESE 254
Score = 134 (52.2 bits), Expect = 4.9e-82, Sum P(5) = 4.9e-82
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 363 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 422
DE + V + + AE + P L +PLLR+Q+ L+W ++E S +GGILAD+
Sbjct: 109 DEHMSEDVDLDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQEQS---VAGGILADE 165
Query: 423 QGLGKTISTIALILKER 439
G+GKTI I+L+L R
Sbjct: 166 MGMGKTIQAISLVLARR 182
Score = 50 (22.7 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 71 DYLDAKRQCEDSKNGLPIYGNSL-SNITLGDGKRSAQPCTYSH 112
D L RQ D L +Y NS +N L D +S Q C H
Sbjct: 542 DLLTRLRQAVDHPY-LVVYSNSSGANANLVDENKSEQECGLCH 583
Score = 42 (19.8 bits), Expect = 5.2e-47, Sum P(4) = 5.2e-47
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQ 796
I+L + + E R ++ ++ +A +GT QN V L L+R Q
Sbjct: 357 IILDEAHYIKERRSNTARAVFALEATYR-WALSGTPLQNRVGELYSLIRFLQ 407
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 388 (141.6 bits), Expect = 1.3e-81, Sum P(7) = 1.3e-81
Identities = 78/191 (40%), Positives = 117/191 (61%)
Query: 622 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 681
+I + + V WFRVVLDEA +IK T+ ++A + L + RWC++GTPIQN +DDL+S
Sbjct: 1111 NITSSGIHSVKWFRVVLDEAHTIKERSTRTSKATYALESIIRWCVTGTPIQNKLDDLFSL 1170
Query: 682 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 741
FLR +PF Y + I P G+ +L+ +L I+LRR K ++ PI+ LP
Sbjct: 1171 LHFLRVEPFHNYSWWNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQKINNTPILKLP 1230
Query: 742 PKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
+ IM+K+ F++EE Y L ++ +F +G++ +NY ++L MLLRLRQ CDHP
Sbjct: 1231 DRTIMIKRDIFSEEEEQIYQDLWKTAKTKFNNLFQSGSLLKNYAHVLEMLLRLRQVCDHP 1290
Query: 802 LLV-KGFDSNS 811
LV K D+N+
Sbjct: 1291 YLVQKKQDNNN 1301
Score = 376 (137.4 bits), Expect = 1.3e-81, Sum P(7) = 1.3e-81
Identities = 81/187 (43%), Positives = 119/187 (63%)
Query: 971 DSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQ 1030
+SN+ +D++ DE K+ K DS K ++FSQWT MLDLLE L + Q
Sbjct: 1662 NSNNWKSSTKIDSLLDELNKVF-KNEPDS------KCLIFSQWTSMLDLLEYPLNLNQFQ 1714
Query: 1031 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTE 1090
+ RLDG + R+ A+K F P V + ++S+KA LGLN+VAA HV L+D WWNP+TE
Sbjct: 1715 FVRLDGKIPQKQREVAIKRFKEEPNVKIFLISIKAGGLGLNLVAASHVFLMDPWWNPSTE 1774
Query: 1091 DQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTV 1150
+QAIDR +RIGQ + V+V+R +K+++E+RIL LQ+ K+++ A T +QTR +
Sbjct: 1775 EQAIDRVYRIGQNKNVNVIRFLIKDSIEERILNLQKSKKDLAKEALN---TMKKQTR--I 1829
Query: 1151 DDLNYLF 1157
++L LF
Sbjct: 1830 EELKMLF 1836
Score = 141 (54.7 bits), Expect = 1.3e-81, Sum P(7) = 1.3e-81
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
TL+VCP SVL+QW E+ N SL+V +YHG +R +D L K D+++TTY+ + E
Sbjct: 944 TLIVCPVSVLQQWHSEIINNTNP--SLNVYIYHGPNRNRDRSFLMKHDIILTTYTTLVAE 1001
Score = 92 (37.4 bits), Expect = 1.3e-81, Sum P(7) = 1.3e-81
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 842 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRN 881
C IC + E+ ++ CGH FC CI + L AD PT N
Sbjct: 1369 CTICMETLENPSITTCGHFFCTLCIQKNLIADTKLVPTIN 1408
Score = 84 (34.6 bits), Expect = 1.3e-81, Sum P(7) = 1.3e-81
Identities = 40/133 (30%), Positives = 54/133 (40%)
Query: 362 SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETS------SL--- 412
S + L Q I++ E P + L +QR AL WM +E S SL
Sbjct: 815 STDNLFKQQIESIITETKLEMDEPKQ-FKLTLRTYQRQALYWMHHRELSEPEEIISLVDL 873
Query: 413 -------HCSGGILADDQGLGKTISTIALIL--KERPP---SFRTEDDNKRQLETLNLDE 460
GG+L DD G+GKTI IA IL K P S E++N N +
Sbjct: 874 DGSKDLSFVKGGLLCDDMGMGKTIEIIATILANKSNYPINSSSDIENNNNNNNNYNNNNN 933
Query: 461 EDNGIQVNGLDLV 473
N +Q + L+
Sbjct: 934 NTNQVQQSNCTLI 946
Score = 41 (19.5 bits), Expect = 1.3e-81, Sum P(7) = 1.3e-81
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 301 PARSNQSLVLGKTLSMNRSACSNHS 325
PA SNQS+ L + N S +N++
Sbjct: 727 PATSNQSIPLFHNNNNNNSNSNNNN 751
Score = 38 (18.4 bits), Expect = 1.3e-81, Sum P(7) = 1.3e-81
Identities = 21/76 (27%), Positives = 30/76 (39%)
Query: 99 GDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHD 158
G S P TY H SS T V+ N +S+ S S N++ ++
Sbjct: 437 GSNLVSPSPTTYPHYISSST---VW-----NQQYISFFSSSSASSSASVNIKSTNNNNNN 488
Query: 159 GCNSFPFKDSGQSFIG 174
N+ S +SFIG
Sbjct: 489 NNNNMNNTISKESFIG 504
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 328 (120.5 bits), Expect = 7.5e-81, Sum P(6) = 7.5e-81
Identities = 68/152 (44%), Positives = 97/152 (63%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K+IVFSQ+T MLDL+E LK + Q +L G+MS RD+ +K F + V ++SLKA
Sbjct: 639 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKA 698
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+ LN+ A V +LD WWNP+ E Q+ DR HRIGQ RPV + R +++++E RI+ LQ
Sbjct: 699 GGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQ 758
Query: 1126 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+KK M+ + +DE +RLT DL +LF
Sbjct: 759 EKKANMIHATINQDEAA--ISRLTPADLQFLF 788
Score = 187 (70.9 bits), Expect = 7.5e-81, Sum P(6) = 7.5e-81
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + ++RV+LDEA +IK+ ++ ARA L+ ++RWCLSGTP+QN I ++YS RFL
Sbjct: 311 LHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNI 370
Query: 688 DPFAVYKSFCS 698
+PF Y FC+
Sbjct: 371 NPFTKY--FCT 379
Score = 182 (69.1 bits), Expect = 7.5e-81, Sum P(6) = 7.5e-81
Identities = 35/96 (36%), Positives = 57/96 (59%)
Query: 709 VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR 768
++ + +Q +LK IMLRRTK D + LPP+++ +++ F +EE+D Y L +S+
Sbjct: 428 LESFNNIQTLLKNIMLRRTKVERADD---LGLPPRIVTVRRDFFNEEEKDLYRSLYTDSK 484
Query: 769 DQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
++ + G V NY NI ++ R+RQ DHP LV
Sbjct: 485 RKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLV 520
Score = 143 (55.4 bits), Expect = 7.5e-81, Sum P(6) = 7.5e-81
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
+LVV PT L QW E+ +KG L + +YHG+SRT D +L +DVV+TTY+++
Sbjct: 233 SLVVAPTVALMQWKNEIEQH--TKGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 566 VPKQPLG 572
KQ G
Sbjct: 291 FRKQNYG 297
Score = 122 (48.0 bits), Expect = 7.5e-81, Sum P(6) = 7.5e-81
Identities = 41/129 (31%), Positives = 61/129 (47%)
Query: 836 EASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA---DDNQ--CPTRNCKIRLSLSS 890
+ + IC +CND E+ + S C H FC CI E + + ++N+ CP C I LS+
Sbjct: 531 DIGVVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPV--CHIGLSID- 587
Query: 891 VFSKATLNNSLSQRQPGQEIPTD-YSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPR 949
LSQ P E+ D + +V + G W +S+KI+A +E L L R
Sbjct: 588 ----------LSQ--PALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKL---R 632
Query: 950 GNTVTNHSL 958
N T S+
Sbjct: 633 SNKRTIKSI 641
Score = 118 (46.6 bits), Expect = 7.5e-81, Sum P(6) = 7.5e-81
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE--RPPS 442
PDG + + LL Q L W++ +E S++ +GG+LAD+ G+GKTI TIAL++ + + PS
Sbjct: 177 PDG-MTIKLLPFQLEGLHWLISQE-ESIY-AGGVLADEMGMGKTIQTIALLMNDLTKSPS 233
Score = 41 (19.5 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 658 LRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 700
L +W S T I+ +++LY R V+ F SM+
Sbjct: 609 LNMSGKW-QSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSML 650
Score = 41 (19.5 bits), Expect = 2.0e-40, Sum P(4) = 2.0e-40
Identities = 17/84 (20%), Positives = 35/84 (41%)
Query: 712 YKKLQAVLK--TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRD 769
Y L++V + RR G + N+ ++L + ++R + +N+
Sbjct: 284 YAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAH-NIKDRQSNTARAVNNLK 342
Query: 770 QFKEYAAAGTVKQNYVNILLMLLR 793
K + +GT QN + + L+R
Sbjct: 343 TQKRWCLSGTPLQNRIGEMYSLIR 366
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 383 (139.9 bits), Expect = 1.1e-80, Sum P(5) = 1.1e-80
Identities = 90/246 (36%), Positives = 128/246 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W+R+VLDEA +I+N T A+ C L AK RWCLSGTPIQN ID+ YS +FLR
Sbjct: 386 LLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRI 445
Query: 688 DPFAVYKSFCSMIKVPISK---NPVKG-YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
P+ V+ F I P+ + V+ K+L+ +L + + RRTK T ++ PI+NLPPK
Sbjct: 446 KPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPK 505
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
I V+ EER Y++ +++ Y Y +L+ LLRLRQ C HP L
Sbjct: 506 TIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWL 565
Query: 804 VKG--FDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSI-CGHV 860
VK D++ +R S + + + C +C DP V I CGH
Sbjct: 566 VKSSSLDNSFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHF 625
Query: 861 FCNQCI 866
C +C+
Sbjct: 626 TCQECM 631
Score = 341 (125.1 bits), Expect = 1.1e-80, Sum P(5) = 1.1e-80
Identities = 70/153 (45%), Positives = 107/153 (69%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
EK +V+SQ+++ L L+ LK +I++ R DGTMS R K++ FN +V VM++SLK
Sbjct: 742 EKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLK 801
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A S+GLN+ A HV+L + ++NP+ EDQAIDR HR+GQ +PV+V R K+T+E+RI+++
Sbjct: 802 AGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSV 861
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
Q+KKR++V A +E +RL ++L YLF
Sbjct: 862 QRKKRQLVKEALDSNENN-PLSRLDKEELLYLF 893
Score = 142 (55.0 bits), Expect = 1.1e-80, Sum P(5) = 1.1e-80
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVSME 565
L+V ++L QWAEEL KV LSV ++HGS++ D EL+++DVV+TTYS+++ E
Sbjct: 304 LIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYE 363
Query: 566 VPKQ 569
+ KQ
Sbjct: 364 M-KQ 366
Score = 121 (47.7 bits), Expect = 1.1e-80, Sum P(5) = 1.1e-80
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
L V LL HQ +WM E SS C GG++ADD GLGKTI TIAL+L ++
Sbjct: 246 LLVSLLPHQVEGHAWMESMEQSS-KC-GGVMADDMGLGKTIQTIALLLTQK 294
Score = 51 (23.0 bits), Expect = 1.1e-80, Sum P(5) = 1.1e-80
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 9 DTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSS 49
D++ P FQ L + EE A + +DE + A SSS
Sbjct: 2 DSLSAYPPQSTFQQLQNDEELARRLQDEWNSSSPSSAPSSS 42
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 427 (155.4 bits), Expect = 4.0e-80, Sum P(5) = 4.0e-80
Identities = 117/323 (36%), Positives = 166/323 (51%)
Query: 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690
V WFR+VLDEA +IKN ++Q++ A L A RRWCL+GTPIQN ++DLYS RFLR +P+
Sbjct: 565 VRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPW 624
Query: 691 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKG-TLLDGEPIINLPPKVIMLKQ 749
+ + +++ P + +G K +Q++LK IMLRRTK T +G PI+ LPP +
Sbjct: 625 GTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIY 684
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 809
+ ++ ERDFY L S+ +F ++ G V NY +IL +LLRLRQ CDHP LV
Sbjct: 685 CELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGD 744
Query: 810 NSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDA----VVSICGHVFCNQC 865
+ +++K+ L+ + L G D P +A VV +C
Sbjct: 745 TAEYSDLNKLSKRF--------LSGKSSGLEREG--KDVPSEAFVQEVVEELRKGEQGEC 794
Query: 866 -ICERLTADD--NQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA 922
IC D C R C+ L S S + L QE+ T ++S+
Sbjct: 795 PICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVSKQELITAPTESRF--Q 852
Query: 923 PSCEGVWYNSSKIKAALEVLQSL 945
E W SSKI A LE L+ L
Sbjct: 853 VDVEKNWVESSKITALLEELEGL 875
Score = 355 (130.0 bits), Expect = 4.0e-80, Sum P(5) = 4.0e-80
Identities = 70/172 (40%), Positives = 111/172 (64%)
Query: 987 ENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDK 1045
E+ KI A ++ ++ G K+I+FSQWT LDLL+ L ++ + RLDGT+S R+K
Sbjct: 861 ESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREK 920
Query: 1046 AVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105
+K+F+ + V++MSLKA +G+N+ AA + ++D WWNP E+QA+ R HRIGQT+
Sbjct: 921 VLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKE 980
Query: 1106 VSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
V + R VK TVE+R+ A+Q +K+ M++ A + E + R +++L LF
Sbjct: 981 VKIRRFIVKGTVEERMEAVQARKQRMISGALTDQEV--RSAR--IEELKMLF 1028
Score = 172 (65.6 bits), Expect = 4.0e-80, Sum P(5) = 4.0e-80
Identities = 54/154 (35%), Positives = 77/154 (50%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 475
GGILAD GLGKT+ TI+L+L S++ N E D I + DL
Sbjct: 414 GGILADAMGLGKTVMTISLLLAH---SWKAASTG---FLCPNY-EGDKVISSSVDDLTSP 466
Query: 476 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVL 535
+ + G + +EQ G L+VCP ++L QW E+ GSLSV
Sbjct: 467 PVKATKFL--GFDKR---LLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KPGSLSVY 520
Query: 536 VYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ 569
V++G SR KD L++ DVVITTY +++ E ++
Sbjct: 521 VHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQE 554
Score = 42 (19.8 bits), Expect = 1.5e-25, Sum P(5) = 1.5e-25
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 421 DDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC 480
D++GL S + I+ R S + D R + L L D +V +L + E D+
Sbjct: 642 DERGLKLVQSILKPIMLRRTKS--STDREGRPI--LVLPPAD--ARVIYCELSESERDFY 695
Query: 481 RVVPNGSSAKSFNFVEQAK 499
+ S K FVEQ K
Sbjct: 696 DALFKRSKVKFDQFVEQGK 714
Score = 41 (19.5 bits), Expect = 4.0e-80, Sum P(5) = 4.0e-80
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 374 GISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 408
G S E P +L L +Q+ AL WM Q E
Sbjct: 330 GDSSGLKEMETPHTLLC-ELRPYQKQALHWMTQLE 363
Score = 41 (19.5 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 690 FAVYKSFCSMIKVPISKN 707
F+ + +F ++++P+S+N
Sbjct: 885 FSQWTAFLDLLQIPLSRN 902
Score = 39 (18.8 bits), Expect = 4.0e-80, Sum P(5) = 4.0e-80
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 12 FGDPSSFNFQHLLSSEETATKPKDEEGEFTTE---IACSS-SGL 51
FGD S H + E + EE E + CS +GL
Sbjct: 78 FGDSGSVGANHRVEEENESVNGGGEESVSGNEWWFVGCSELAGL 121
Score = 39 (18.8 bits), Expect = 1.4e-25, Sum P(4) = 1.4e-25
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 265 SHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQ 306
S L KLS + SS + D P ++++ + R +
Sbjct: 749 SDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGE 790
Score = 38 (18.4 bits), Expect = 8.2e-80, Sum P(5) = 8.2e-80
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 126 DEGNDDLFPCWST--VSDSVEPIDEAVGRNSSYHDGCNSFP 164
DE L PCW ++D E + V NS D FP
Sbjct: 369 DEAATMLHPCWEAYCLADKRELV---VYLNSFTGDATIHFP 406
Score = 37 (18.1 bits), Expect = 9.7e-66, Sum P(5) = 9.7e-66
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 313 TLSMNRSACSNHSVALGKPVVT 334
TL M R ++ LGK V+T
Sbjct: 408 TLQMARGGILADAMGLGKTVMT 429
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 424 (154.3 bits), Expect = 7.3e-80, Sum P(7) = 7.3e-80
Identities = 90/261 (34%), Positives = 144/261 (55%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 604
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 605 LKPFVDREWWHRTIQRPVTMGDEAGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 664
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 805
++ + +DEER Y ++ + Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 665 IQHITLSDEERKIYQSVKNEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLAN 724
Query: 806 GFDSNSLLRSSV--EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 863
S+ + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 725 AVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEE---CAICLDSLMAPVITHCAHVFCK 781
Query: 864 QCICERLTADDNQCPTRNCKI 884
CIC+ + N+ P C +
Sbjct: 782 PCICQVI---QNEQPHAKCPL 799
Score = 289 (106.8 bits), Expect = 7.3e-80, Sum P(7) = 7.3e-80
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1063
K++V SQ+T L L+E L+ S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 853 KSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 912
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 913 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 972
Query: 1124 LQQKKREMVASAFGEDETGGQQTR 1147
+Q KRE+ A AFG +T + +
Sbjct: 973 IQNTKRELAAGAFGTKKTNASEMK 996
Score = 144 (55.7 bits), Expect = 7.3e-80, Sum P(7) = 7.3e-80
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 481 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
+++ G+SA + + +P TL++CP SVL W ++ + S L+ VY+G
Sbjct: 454 KMLKRGASAVESSKKTDVEDKPRT-TLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGP 512
Query: 541 SRTKDPCELAKFDVVITTYSIVS 563
R +DP L+K D+V+TTY+I++
Sbjct: 513 DRVRDPTLLSKQDIVLTTYNILT 535
Score = 92 (37.4 bits), Expect = 7.3e-80, Sum P(7) = 7.3e-80
Identities = 32/86 (37%), Positives = 41/86 (47%)
Query: 416 GGILADDQGLGKTISTIALILKE--RPPSFRTEDDNKRQLET-LNLDEED-----NGIQV 467
GGILADD GLGKT++ IA+IL S E K QL+ N+ +E N
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGKSLPVERIKKNQLKKECNVYDESMELGGNNTSE 348
Query: 468 NGLDLVKQESDYCRVVPNGSSAKSFN 493
L+K E C P+ S K+ N
Sbjct: 349 KAAGLIK-EGSRCSGEPSISDVKTQN 373
Score = 69 (29.3 bits), Expect = 7.3e-80, Sum P(7) = 7.3e-80
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETS 410
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 7.3e-80, Sum P(7) = 7.3e-80
Identities = 21/74 (28%), Positives = 28/74 (37%)
Query: 891 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEGV------WYNSSKIKA 937
VF K + + QP + P D L+E P +C W +SSKI A
Sbjct: 778 VFCKPCICQVIQNEQPHAKCPLCRNDIHGDSLIECPPEELACNTEKKSNMEWTSSSKINA 837
Query: 938 ALEVLQSLAKPRGN 951
+ L L K N
Sbjct: 838 LMHALIDLRKKNPN 851
Score = 49 (22.3 bits), Expect = 1.2e-27, Sum P(6) = 1.2e-27
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 892 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPR 949
+ K+ ++S S+R+P T+ SDS+ VE PS E K+K L+ QS K R
Sbjct: 375 YPKSEFSSSRSKRKPAAVQYTESSDSEEVE-PS-E----LPQKMKGKLKRTQSETKIR 426
Score = 45 (20.9 bits), Expect = 7.0e-72, Sum P(5) = 7.0e-72
Identities = 17/66 (25%), Positives = 26/66 (39%)
Query: 62 GSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQM 121
G L V I K++C + + GN+ S G K ++ C+ S S Q
Sbjct: 315 GKSLPVERIKKNQLKKECNVYDESMELGGNNTSEKAAGLIKEGSR-CSGEPSISDVKTQN 373
Query: 122 VFAKDE 127
+ K E
Sbjct: 374 KYPKSE 379
Score = 39 (18.8 bits), Expect = 7.3e-80, Sum P(7) = 7.3e-80
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 244 KKELDGVKEDMEAEIKTRSM 263
K E D + ED++ + KT+ M
Sbjct: 211 KTEFDKLFEDLKEDDKTQEM 230
Score = 38 (18.4 bits), Expect = 2.0e-78, Sum P(7) = 2.0e-78
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 968 CPGDSNDLHGGDTL 981
CP ND+HG D+L
Sbjct: 797 CPLCRNDIHG-DSL 809
Score = 38 (18.4 bits), Expect = 2.2e-20, Sum P(4) = 2.2e-20
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 309 VLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYP 344
VLG L + + C H +A V+S S +D P
Sbjct: 705 VLGLLLRLRQICCHTHLLA---NAVSSSGPSGNDTP 737
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 424 (154.3 bits), Expect = 3.7e-79, Sum P(7) = 3.7e-79
Identities = 91/261 (34%), Positives = 145/261 (55%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 543 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 602
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 603 LKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 662
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H L+
Sbjct: 663 IQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTN 722
Query: 807 FDSNSLLRSS---VEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 863
S+S + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 723 AGSSSGPSGNDTPEELRKKLIRKMKLILSSGSDEE---CAICLDSLTVPVITHCAHVFCK 779
Query: 864 QCICERLTADDNQCPTRNCKI 884
CIC+ + N+ P C +
Sbjct: 780 PCICQVI---QNEQPHAKCPL 797
Score = 289 (106.8 bits), Expect = 3.7e-79, Sum P(7) = 3.7e-79
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1063
K++V SQ+T L L+E L+ S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 851 KSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 910
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 911 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 970
Query: 1124 LQQKKREMVASAFGEDETGGQQTR 1147
+Q KRE+ A AFG +T + +
Sbjct: 971 IQNTKRELAAGAFGTKKTNANEMK 994
Score = 148 (57.2 bits), Expect = 3.7e-79, Sum P(7) = 3.7e-79
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 481 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
R++ G+SA + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 452 RMLKKGASAVEGSKKTDIEDRPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 510
Query: 541 SRTKDPCELAKFDVVITTYSIVS 563
R +DP L+K D+V+TTY+I++
Sbjct: 511 DRIRDPALLSKQDIVLTTYNILT 533
Score = 82 (33.9 bits), Expect = 3.7e-79, Sum P(7) = 3.7e-79
Identities = 16/21 (76%), Positives = 19/21 (90%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILADD GLGKT++ IA+IL
Sbjct: 289 GGILADDMGLGKTLTAIAVIL 309
Score = 69 (29.3 bits), Expect = 3.7e-79, Sum P(7) = 3.7e-79
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETS 410
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 3.7e-79, Sum P(7) = 3.7e-79
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 891 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEGV------WYNSSKIKA 937
VF K + + QP + P D L+E P +C+ W +SSKI A
Sbjct: 776 VFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNTEWTSSSKINA 835
Query: 938 ALEVLQSLAKPRGN 951
+ L L K N
Sbjct: 836 LMHALIDLRKKNPN 849
Score = 44 (20.5 bits), Expect = 3.3e-72, Sum P(5) = 3.3e-72
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 62 GSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQM 121
G L V I K++C + + + GN+ S DG C+ S S +
Sbjct: 315 GKPLPVERIKKNQMKKECNVNDQSMKLGGNNASE--KADGLIKGSRCSGEPSISDVKGKK 372
Query: 122 VFAKDE 127
+ K E
Sbjct: 373 KYTKSE 378
Score = 41 (19.5 bits), Expect = 5.0e-78, Sum P(7) = 5.0e-78
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 968 CPGDSNDLHGGDTLD 982
CP ND+HG + L+
Sbjct: 795 CPLCRNDIHGDNLLE 809
Score = 38 (18.4 bits), Expect = 3.7e-79, Sum P(7) = 3.7e-79
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 244 KKELDGVKEDMEAEIKTRSM 263
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 437 (158.9 bits), Expect = 1.7e-75, Sum P(5) = 1.7e-75
Identities = 93/260 (35%), Positives = 147/260 (56%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 539 PLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLK 598
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
PF + + +I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 599 LKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 658
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 805
++ + ++EER Y ++ + Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 659 IQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLTN 718
Query: 806 GFDSNSLLRSSV-EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 864
G S+ RS E +K+ E+ +L+ S C IC D V++ C HVFC
Sbjct: 719 GMSSSGPSRSDTPEELRKMLIEKMKIILS--SGSDEECAICLDSLTFPVITHCAHVFCKP 776
Query: 865 CICERLTADDN--QCPT-RN 881
CIC+ + ++ +CP RN
Sbjct: 777 CICQVIHSEQPHAKCPLCRN 796
Score = 288 (106.4 bits), Expect = 1.7e-75, Sum P(5) = 1.7e-75
Identities = 59/138 (42%), Positives = 89/138 (64%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1063
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSL 906
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 907 KAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 966
Query: 1124 LQQKKREMVASAFGEDET 1141
+Q KR++ A AFG +T
Sbjct: 967 IQNTKRDLAAGAFGTKKT 984
Score = 133 (51.9 bits), Expect = 1.7e-75, Sum P(5) = 1.7e-75
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 500 GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTY 559
G TL++CP SVL W ++ V S+ L+ VY+G R +D L+K D+++TTY
Sbjct: 466 GERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTY 525
Query: 560 SIVS 563
+I++
Sbjct: 526 NILT 529
Score = 87 (35.7 bits), Expect = 1.7e-75, Sum P(5) = 1.7e-75
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 402 SWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436
++ V++ ++H GGILADD GLGKT++ IA+IL
Sbjct: 277 NFSVKERPENVH--GGILADDMGLGKTLTAIAVIL 309
Score = 67 (28.6 bits), Expect = 2.0e-73, Sum P(5) = 2.0e-73
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETS 410
P + PLL HQ+ AL+WM+ +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMIARENS 257
Score = 42 (19.8 bits), Expect = 1.7e-75, Sum P(5) = 1.7e-75
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 891 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEG------VWYNSSKIKA 937
VF K + + QP + P + L+E P +C+ W +SSKI A
Sbjct: 772 VFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLECPPEELACDSDKESSMEWKSSSKINA 831
Query: 938 ALEVLQSL 945
+ L L
Sbjct: 832 LMHALIEL 839
Score = 39 (18.8 bits), Expect = 3.5e-75, Sum P(5) = 3.5e-75
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 960 HSFNGSICCPGDSNDLHGGDTLD 982
HS CP N++HG + L+
Sbjct: 783 HSEQPHAKCPLCRNEIHGDNLLE 805
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 313 (115.2 bits), Expect = 8.3e-75, Sum P(6) = 8.3e-75
Identities = 60/152 (39%), Positives = 98/152 (64%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K+IVFSQ+T MLDL+ L+ + +LDG M+ AR ++ F+ +++ ++SLKA
Sbjct: 710 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKA 769
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+ LN+ A V ++D WWN + QA+DR HRIGQ RP+ V+ L ++N++E +I+ LQ
Sbjct: 770 GGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQ 829
Query: 1126 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+KK +M+ + +DE Q L+V+D+ +LF
Sbjct: 830 EKKAQMIHATIDQDEKALNQ--LSVEDMQFLF 859
Score = 196 (74.1 bits), Expect = 8.3e-75, Sum P(6) = 8.3e-75
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 699 MIKVPISK----NPVK-GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFT 753
M+K PI K P K +KK+ ++LK IMLRRTK L+ + LPP+V+ +++ F
Sbjct: 485 MLK-PIQKFGYEGPGKLAFKKVHSLLKHIMLRRTK---LERADDLGLPPRVVEVRKDLFN 540
Query: 754 DEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
+EE D Y L ++S+ +F Y A G V NY NI ++ R+RQ DHP LV
Sbjct: 541 EEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLV 591
Score = 182 (69.1 bits), Expect = 8.3e-75, Sum P(6) = 8.3e-75
Identities = 36/70 (51%), Positives = 48/70 (68%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ ++R++LDEA IK+ ARA GLR R+ CLSGTP+QN I +L+S RFLR
Sbjct: 382 LHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRA 441
Query: 688 DPFAVYKSFC 697
DPFA Y +C
Sbjct: 442 DPFAYY--YC 449
Score = 118 (46.6 bits), Expect = 8.3e-75, Sum P(6) = 8.3e-75
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 495 VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDV 554
+ + +G+P TLVV P + QW EE+ T+K +LS +Y+G +R EL+ +DV
Sbjct: 296 LSEPRGKP---TLVVAPVVAIMQWKEEIDTH-TNK-ALSTYLYYGQARDISGEELSSYDV 350
Query: 555 VITTYSIVSMEVPKQPLG 572
V+T+Y+++ K+ G
Sbjct: 351 VLTSYNVIESVYRKERSG 368
Score = 116 (45.9 bits), Expect = 8.3e-75, Sum P(6) = 8.3e-75
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 438
L + LL QR + W+ ++E SS GGILAD+ G+GKTI TIAL+L E
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSF--GGGILADEMGMGKTIQTIALLLSE 298
Score = 103 (41.3 bits), Expect = 8.3e-75, Sum P(6) = 8.3e-75
Identities = 37/115 (32%), Positives = 54/115 (46%)
Query: 841 ICGICNDPPEDAVVSICGHVFCNQCICERLTA-DDNQ---CPTRNCKIRLSLSSVFSKAT 896
+C IC++ +DA+ S C H FC C+ E + A D + CP+ C I LS+
Sbjct: 608 VCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPS--CFIPLSID------- 658
Query: 897 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGV----WYNSSKIKAALEVLQSLAK 947
LS P E D+S+ K A + W +S+KI+A +E L L K
Sbjct: 659 ----LSA--PALE---DFSEEKFKNASILNRIDMNSWRSSTKIEALVEELYLLRK 704
Score = 39 (18.8 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 191 EHEDLILESKR 201
+H DL+L SKR
Sbjct: 586 DHPDLVLASKR 596
Score = 37 (18.1 bits), Expect = 9.4e-44, Sum P(5) = 9.4e-44
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 772 KEYAAAGTVKQNYVNILLMLLRLRQA 797
++ +GT QN + L LLR +A
Sbjct: 416 RKICLSGTPLQNRIGELFSLLRFLRA 441
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 426 (155.0 bits), Expect = 1.6e-74, Sum P(6) = 1.6e-74
Identities = 91/261 (34%), Positives = 145/261 (55%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 547 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLK 606
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 607 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 666
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 805
++ + +DEER Y ++ + R Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 667 IQHITLSDEERKIYQSVKNDGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTN 726
Query: 806 GFDSNSLLRSSV--EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 863
S+ + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 727 AVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEE---CAICLDSLTVPVITHCAHVFCK 783
Query: 864 QCICERLTADDNQCPTRNCKI 884
CIC+ + N+ P C +
Sbjct: 784 PCICQVI---QNEQPHAKCPL 801
Score = 289 (106.8 bits), Expect = 1.6e-74, Sum P(6) = 1.6e-74
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1063
K++V SQ+T L L+E L+ S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 855 KSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 914
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 915 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 974
Query: 1124 LQQKKREMVASAFGEDETGGQQTR 1147
+Q KRE+ A AFG +T + +
Sbjct: 975 IQNTKRELAAGAFGTKKTNASEMK 998
Score = 146 (56.5 bits), Expect = 1.6e-74, Sum P(6) = 1.6e-74
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 481 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
+++ G+SA + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 456 KMLKKGASAVEGSKKTDVEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 514
Query: 541 SRTKDPCELAKFDVVITTYSIVS 563
R +DP L+K D+V+TTY+I++
Sbjct: 515 DRVRDPALLSKQDIVLTTYNILT 537
Score = 94 (38.1 bits), Expect = 4.6e-69, Sum P(6) = 4.6e-69
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 416 GGILADDQGLGKTISTIALILKE----RPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471
GGILADD GLGKT++ IA+IL +P F E K QL+ + D +Q+ G +
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGKPLPF--ERIKKNQLKK-ECNVYDESVQLGGNN 345
Query: 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGR 501
+++D GS + KG+
Sbjct: 346 -TSEKADGLTKEMEGSRCSGEPSISDVKGK 374
Score = 68 (29.0 bits), Expect = 1.6e-74, Sum P(6) = 1.6e-74
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETS 410
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAVETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 1.6e-74, Sum P(6) = 1.6e-74
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 891 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAP----SCEGV------WYNSSKIKA 937
VF K + + QP + P D L+E P +C+ W +SSKI A
Sbjct: 780 VFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNMEWTSSSKINA 839
Query: 938 ALEVLQSLAKPRGN 951
+ L L K N
Sbjct: 840 LMHALIDLRKKNPN 853
Score = 41 (19.5 bits), Expect = 2.2e-73, Sum P(6) = 2.2e-73
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 968 CPGDSNDLHGGDTLD 982
CP ND+HG + L+
Sbjct: 799 CPLCRNDIHGDNLLE 813
Score = 38 (18.4 bits), Expect = 1.6e-74, Sum P(6) = 1.6e-74
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 244 KKELDGVKEDMEAEIKTRSM 263
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 417 (151.9 bits), Expect = 4.1e-74, Sum P(5) = 4.1e-74
Identities = 89/256 (34%), Positives = 142/256 (55%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+S FL+
Sbjct: 540 PLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLK 599
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
PF + + +I+ P++ G ++LQ+++K+I LRRTK + + G+P++ LP + +
Sbjct: 600 LKPFTDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRRTKTSKIKGKPVLELPERKVF 659
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL-VK 805
++ + + EER Y ++ + Y GTV +Y ++L +LLRLRQ C H L
Sbjct: 660 IQHITLSVEERKIYQSVKNEGKATIARYFTEGTVLAHYADVLGLLLRLRQICCHVHLPTN 719
Query: 806 GFDSNSLLRSSV-EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 864
G S+ RS E +K+ + +L+ S C IC D V++ C HVFC
Sbjct: 720 GTSSSDPSRSDTPEELRKMLVTKMKLILS--SGSDEECSICLDSLTFPVITHCAHVFCKP 777
Query: 865 CICERLTADDN--QCP 878
CIC+ + + +CP
Sbjct: 778 CICQVIQREQPHAKCP 793
Score = 292 (107.8 bits), Expect = 4.1e-74, Sum P(5) = 4.1e-74
Identities = 60/144 (41%), Positives = 91/144 (63%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1063
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 848 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLSL 907
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 908 KAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 967
Query: 1124 LQQKKREMVASAFGEDETGGQQTR 1147
+Q KRE+ A AFG +T + +
Sbjct: 968 IQNMKRELAAGAFGTKKTDADEMK 991
Score = 137 (53.3 bits), Expect = 4.1e-74, Sum P(5) = 4.1e-74
Identities = 34/125 (27%), Positives = 65/125 (52%)
Query: 450 KRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSA-------KSFNFVEQAK--- 499
K +L+ LD + +V G +K+++ + + A K + +E +K
Sbjct: 409 KGKLKNTQLDTKS---KVKGSSKIKEDTQFALALTYFGPATKKKMLKKGTSVMESSKKCD 465
Query: 500 -GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITT 558
G TL++CP SVL W +++ + S+ L++ VY+G R +D L+K D+++TT
Sbjct: 466 TGERTRTTLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRIRDSTWLSKQDIILTT 525
Query: 559 YSIVS 563
Y+I++
Sbjct: 526 YNILT 530
Score = 87 (35.7 bits), Expect = 4.1e-74, Sum P(5) = 4.1e-74
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 402 SWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436
++ V++ ++H GGILADD GLGKT++ IA+IL
Sbjct: 276 NFSVKERPENVH--GGILADDMGLGKTLTAIAVIL 308
Score = 66 (28.3 bits), Expect = 6.2e-72, Sum P(5) = 6.2e-72
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETS 410
P + PLL HQ+ AL+WM+ +E S
Sbjct: 231 PAEAVETPLLPHQKQALAWMIARENS 256
Score = 43 (20.2 bits), Expect = 4.1e-74, Sum P(5) = 4.1e-74
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 891 VFSKATLNNSLSQRQPGQEIPTDYSD---SKLVEAP----SCEG------VWYNSSKIKA 937
VF K + + + QP + P S+ L+E P +C+ W +SSKI A
Sbjct: 773 VFCKPCICQVIQREQPHAKCPLCRSNIHGHNLLECPPEELACDSDNKSDMEWTSSSKINA 832
Query: 938 ALEVLQSL 945
+ L L
Sbjct: 833 LMNALIEL 840
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 392 (143.0 bits), Expect = 5.9e-74, Sum P(7) = 5.9e-74
Identities = 76/186 (40%), Positives = 117/186 (62%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L V WFRVVLDE +I+N ++ A+AC + ++ RW ++GTPI N +DDLYS +F+RY
Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRY 704
Query: 688 DPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVI 745
+P+ Y + + + +P SK+ +K +Q++L+ ++LRRTK T +G I+ LPPK +
Sbjct: 705 EPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTV 764
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
++ +DF+D ER Y L ++ AGT+ +NY IL +LLRLRQAC P+L+
Sbjct: 765 KIEYLDFSDSERKIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLS 824
Query: 806 GFDSNS 811
NS
Sbjct: 825 NMTINS 830
Score = 331 (121.6 bits), Expect = 5.9e-74, Sum P(7) = 5.9e-74
Identities = 66/153 (43%), Positives = 100/153 (65%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
EK ++FSQ+T LD++ L+ + Y R DGTMS R A++ F P+V+V+I+SLK
Sbjct: 982 EKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISLK 1041
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A +GLN+ A HV ++D WW+ + E QAIDR HR+GQ +PV V R V++TVE+R+L +
Sbjct: 1042 AGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKI 1101
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
Q++K + G E G QQ + +++D+ LF
Sbjct: 1102 QERKN-FITGTLGMSE-GKQQVQ-SIEDIKMLF 1131
Score = 89 (36.4 bits), Expect = 5.9e-74, Sum P(7) = 5.9e-74
Identities = 28/113 (24%), Positives = 49/113 (43%)
Query: 810 NSLLRSSVEMAKKLPQE-RQMYLLNCLEASLAICGIC-NDPPEDAVVSICGHVFCNQCIC 867
NSL+ V K +P + ++ L EA + C IC N+P ++ ++ C H C C+
Sbjct: 844 NSLINQFVVTGKPIPSDILKIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLS 903
Query: 868 ERLTADD--NQCPT--RNCKIRLSLSSVFSKATLNNSLSQRQ--PGQEIPTDY 914
E + N P C+ + V+ + N+ +Q G+E+ Y
Sbjct: 904 EHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQSTLLVGEEVKWKY 956
Score = 79 (32.9 bits), Expect = 5.9e-74, Sum P(7) = 5.9e-74
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTED 447
GGILAD+ GLGKTI ++LI P F T++
Sbjct: 524 GGILADEMGLGKTIEVLSLIHSR--PCFSTDE 553
Score = 79 (32.9 bits), Expect = 5.9e-74, Sum P(7) = 5.9e-74
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFD---VVITTYS 560
TLVV P S+L QW E KV+ ++Y+GS + D C + ++IT+Y
Sbjct: 572 TLVVAPMSLLDQWHSEAC-KVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITSYG 630
Query: 561 IVSMEVPKQ 569
++ E +Q
Sbjct: 631 VLLSEFSQQ 639
Score = 49 (22.3 bits), Expect = 5.9e-74, Sum P(7) = 5.9e-74
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 362 SDERLIL--QVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 408
SD+ IL +V G P+A + A+ L +Q+ AL WM KE
Sbjct: 415 SDQLAILYDKVKTSGAELPSAPKPS---TFALDLREYQKQALYWMCCKE 460
Score = 45 (20.9 bits), Expect = 5.9e-74, Sum P(7) = 5.9e-74
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 117 RTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDE 148
+T + A+DE N DL P S+ D + + +
Sbjct: 387 KTSSLPEARDESNSDLTP--SSTEDEEDVVSD 416
Score = 39 (18.8 bits), Expect = 2.5e-73, Sum P(7) = 2.5e-73
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 250 VKEDME-AEIKTRSMASHLLKLS--PESIQSNSSDCK-SHVDDEPDI 292
++ D+E K +LK S PE+ ++SD S +DE D+
Sbjct: 367 LEPDLEDCNTKESIHIDDILKTSSLPEARDESNSDLTPSSTEDEEDV 413
Score = 38 (18.4 bits), Expect = 4.3e-32, Sum P(6) = 4.3e-32
Identities = 24/97 (24%), Positives = 42/97 (43%)
Query: 930 YNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENE 989
Y S + AL V+QS+ + T + + N + P + + + LD SD
Sbjct: 721 YQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKI---EYLD-FSDSER 776
Query: 990 KI------AAKCSIDSIKLGGEKAIVFSQWTKMLDLL 1020
KI AK ++++ + G +F +T +L LL
Sbjct: 777 KIYDSLYTKAKSTVNANIVAGT---LFRNYTTILGLL 810
Score = 37 (18.1 bits), Expect = 3.9e-73, Sum P(7) = 3.9e-73
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 296 EDISQPARSNQSLVLGKTLSMNRSACSN 323
+ +S ++S S K LS+N S SN
Sbjct: 234 QKLSIKSQSRNSRKKSKLLSINSSCYSN 261
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 427 (155.4 bits), Expect = 6.4e-74, Sum P(6) = 6.4e-74
Identities = 91/261 (34%), Positives = 144/261 (55%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+
Sbjct: 545 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLK 604
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 605 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 664
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 805
++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 665 IQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTN 724
Query: 806 GFDSNSLLRSSV--EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCN 863
SN + E+ KKL ++ ++ L + + C IC D V++ C HVFC
Sbjct: 725 AVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEE---CAICLDSLTVPVITHCAHVFCK 781
Query: 864 QCICERLTADDNQCPTRNCKI 884
CIC+ + N+ P C +
Sbjct: 782 PCICQVI---QNEQPHAKCPL 799
Score = 291 (107.5 bits), Expect = 6.4e-74, Sum P(6) = 6.4e-74
Identities = 60/144 (41%), Positives = 91/144 (63%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1063
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 853 KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 912
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 913 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 972
Query: 1124 LQQKKREMVASAFGEDETGGQQTR 1147
+Q KKRE+ A AFG + + +
Sbjct: 973 IQNKKRELAAGAFGTKKPNADEMK 996
Score = 136 (52.9 bits), Expect = 6.4e-74, Sum P(6) = 6.4e-74
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 481 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
+++ G+ A + + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 454 KMLKKGACAVEGSKKTDVEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 512
Query: 541 SRTKDPCELAKFDVVITTYSIVS 563
R ++P L+K D+V+TTY+I++
Sbjct: 513 DRIREPALLSKQDIVLTTYNILT 535
Score = 88 (36.0 bits), Expect = 7.0e-69, Sum P(6) = 7.0e-69
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 416 GGILADDQGLGKTISTIALILKE----RPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL- 470
GGILADD GLGKT++ IA+IL RP N + E N++++ + N
Sbjct: 289 GGILADDMGLGKTLTAIAVILTNFHDGRPLPIERVKKNLLKKE-YNVNDDSMKLGGNNTS 347
Query: 471 ---DLVKQESDYCRVVPNGSSAKS---FNFVEQAKGRP 502
D + +++ C P+ S K F E + RP
Sbjct: 348 EKADGLSKDASRCSEQPSISDIKEKSKFRMSELSSSRP 385
Score = 69 (29.3 bits), Expect = 6.4e-74, Sum P(6) = 6.4e-74
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETS 410
P + PLL HQ+ AL+WMV +E S
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENS 257
Score = 52 (23.4 bits), Expect = 6.4e-74, Sum P(6) = 6.4e-74
Identities = 21/74 (28%), Positives = 28/74 (37%)
Query: 891 VFSKATLNNSLSQRQPGQEIP---TDYSDSKLVEAPSCEGV----------WYNSSKIKA 937
VF K + + QP + P D + L+E P E W +SSKI A
Sbjct: 778 VFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINA 837
Query: 938 ALEVLQSLAKPRGN 951
+ L L K N
Sbjct: 838 LMHALTDLRKKNPN 851
Score = 50 (22.7 bits), Expect = 5.7e-65, Sum P(6) = 5.7e-65
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 483 VPNGSSAKSFNFVEQAKGRPAAGTLVVCP----TSVLRQWAEELRNKVTSKGSLSVLVYH 538
+P K N + KGR AG+ V L + K+ KG+ +V
Sbjct: 408 LPQKMKGKLKNVQSETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAV---E 464
Query: 539 GSSRTKDPCELAKFDVVITTYSIVS 563
GS +T D E + ++I S++S
Sbjct: 465 GSKKT-DVEERPRTTLIICPLSVLS 488
Score = 39 (18.8 bits), Expect = 1.0e-21, Sum P(4) = 1.0e-21
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 870 LTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVW 929
L+ D ++C + + S F + L++S +R+ + SDS+ +E
Sbjct: 353 LSKDASRCSEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELP--- 409
Query: 930 YNSSKIKAALEVLQSLAKPR 949
K+K L+ +QS K R
Sbjct: 410 ---QKMKGKLKNVQSETKGR 426
Score = 38 (18.4 bits), Expect = 6.4e-74, Sum P(6) = 6.4e-74
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 244 KKELDGVKEDMEAEIKTRSM 263
K E D + ED++ + KT M
Sbjct: 211 KTEFDKLFEDLKEDDKTHEM 230
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 337 (123.7 bits), Expect = 3.3e-72, Sum P(5) = 3.3e-72
Identities = 73/177 (41%), Positives = 105/177 (59%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W+R++LDEA +IKN ++ A AC L+ RWCL+GTP+QN +D+LYS +FL +PF
Sbjct: 378 WWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFND 437
Query: 693 YKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTKGTLL------DGEP-IINLPPKV 744
+ I +P+ + +K+L+ +L IMLRRTK TLL DG + L ++
Sbjct: 438 QSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTK-TLLEANAGKDGTGGALKLSKRL 496
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
+ F + ERDFYS L N + +G + +NY NIL +LLRLRQAC+HP
Sbjct: 497 VYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHP 553
Score = 332 (121.9 bits), Expect = 3.3e-72, Sum P(5) = 3.3e-72
Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 998 DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS 1057
D+++ G K I+FSQ+T LD+++ L+ + I + R DG M+ AR+K++ +
Sbjct: 665 DTVR-GLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQ 723
Query: 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117
V++ SLK +LGLN+ A V+L D+WWNP E+QAIDR HRIGQ R V V +L V+NT+
Sbjct: 724 VLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTI 783
Query: 1118 EDRILALQQKKREMVASAFGEDETGG-QQTRLTVDDLNYLF 1157
E++I+ LQ KR++ A G+ + +LT++DL +LF
Sbjct: 784 EEKIVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFLF 824
Score = 125 (49.1 bits), Expect = 3.3e-72, Sum P(5) = 3.3e-72
Identities = 29/52 (55%), Positives = 33/52 (63%)
Query: 391 VPLLRHQRIALSWMVQKET-SSLHCSGGILADDQGLGKTISTIALILKERPP 441
+ LL HQ L+W+ +ET S SGGILADD GLGKTI IALIL P
Sbjct: 231 IRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLP 282
Score = 125 (49.1 bits), Expect = 3.3e-72, Sum P(5) = 3.3e-72
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
TLVV P S+++QW E++ K SK L+ +VYHG+SR K + ++DVVITTY I+ E
Sbjct: 291 TLVVAPLSLIKQWESEVQTK--SK--LTAIVYHGASRYKLLKVIHEYDVVITTYQILVSE 346
Score = 39 (18.8 bits), Expect = 3.3e-72, Sum P(5) = 3.3e-72
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 918 KLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTV 953
K ++ P+ + Y SSKI+ L++L + +TV
Sbjct: 633 KGIQDPN-DKTLYKSSKIREILKILSLDEQEEDDTV 667
Score = 37 (18.1 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 453 LETLNLDEEDNGIQVNGL 470
L+ L+LDE++ V GL
Sbjct: 653 LKILSLDEQEEDDTVRGL 670
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 290 (107.1 bits), Expect = 2.0e-71, Sum P(6) = 2.0e-71
Identities = 68/182 (37%), Positives = 107/182 (58%)
Query: 981 LDNISDENEKIA-AKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1037
L IS E+ K++ + +I+ E K++V SQWT ML ++ L+ ++Y LDG+
Sbjct: 988 LFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGS 1047
Query: 1038 MSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
++ R V++FN P+ VM++SL A +GLN+ H+ LLD+ WNP EDQA DR
Sbjct: 1048 VNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLTGGNHLFLLDMHWNPALEDQACDR 1107
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF-GEDETGGQQTRLTVDDLNY 1155
+R+GQ + V + R + TVE++IL LQ +K+ + G+ ET ++LT+ DL
Sbjct: 1108 IYRVGQKKDVVIHRFVCEGTVEEKILQLQTRKKGLAQQVLAGKGET----SKLTLADLKT 1163
Query: 1156 LF 1157
LF
Sbjct: 1164 LF 1165
Score = 286 (105.7 bits), Expect = 2.0e-71, Sum P(6) = 2.0e-71
Identities = 61/149 (40%), Positives = 89/149 (59%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL +V W RV+LDEA +IKN + Q + A LRA RW ++GTPIQN + D+YS RFLR
Sbjct: 728 PLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLR 787
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVI 745
PF YK + K + N KG +L + ++++LRRTK L G+P+++LP + +
Sbjct: 788 CSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSM 843
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEY 774
L Q+ + EE+ Y+ L SR + Y
Sbjct: 844 QLHQLKLSAEEQSVYNVLFARSRSTLQSY 872
Score = 163 (62.4 bits), Expect = 2.0e-71, Sum P(6) = 2.0e-71
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 502 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 561
P+ TL++CP S++ W +E+ +V S G L V +YHG +R K L+++D+V+TTYS+
Sbjct: 640 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 698
Query: 562 VSMEVP 567
+S EVP
Sbjct: 699 LSKEVP 704
Score = 163 (62.4 bits), Expect = 2.0e-71, Sum P(6) = 2.0e-71
Identities = 69/234 (29%), Positives = 107/234 (45%)
Query: 240 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSP-ESIQSNSSDCKSHVDDEPDICILEDI 298
+T+N + L + + E++ A L +S ++I+ + EP +
Sbjct: 415 ATVNIQVLPDKGQRLVKEVQDLEAALSALNISTTDTIEKGENSASGGRCGEP---LPNSF 471
Query: 299 SQPARSN--QSLVLGKTLSMNRSACSNH--SVALGKPVVTSQ-HSSYSDYPGYPGVPLTG 353
S+P + L LG + S+ +H + ALG S G +T
Sbjct: 472 SRPGGTKLITPLPLGDHKAGTSSSSHSHPSAAALGSSEYFGHGFGMNSGVQNLYGGRMTE 531
Query: 354 --LGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSS 411
+ + S SD L +++ A A P G L VPLL HQR AL+W++ +E S
Sbjct: 532 VRIRAVHSAISDAINHLHKSLESCPTEQAVAEDPSG-LKVPLLLHQRQALAWLLWRE-SQ 589
Query: 412 LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
C GGILADD GLGKT++ IALIL ++ +TE +K+ LE L D+ +
Sbjct: 590 RPC-GGILADDMGLGKTLTMIALILTQK--QMKTEKGSKK-LEVW-LSRNDSTV 638
Score = 63 (27.2 bits), Expect = 2.0e-71, Sum P(6) = 2.0e-71
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 767 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK-GFDSNSLLRSSVEMA 820
S+ +F + + + ++L MLLRLRQ C H L+K D +L + ++
Sbjct: 901 SQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLKVALDQANLANEGLSLS 955
Score = 46 (21.3 bits), Expect = 2.0e-71, Sum P(6) = 2.0e-71
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 137 STVSDSVEPID-EAVGRNSSYHDGCNSFP-FKDSGQSFIGLSPSLLSQNQVVHA-KEEHE 193
ST S E D E + C S P K+S S L S + + H KE++
Sbjct: 172 STSGSSTEKEDLEELKTVKKQSKECRSDPELKESAVSESKLCLSETWKGKNTHQDKEKYG 231
Query: 194 DLILESKRARFCQEICDGSSSRSPI 218
+ ESK++ ++ G S P+
Sbjct: 232 GSVRESKKSEHVEKEPGGRSELFPV 256
Score = 45 (20.9 bits), Expect = 4.9e-22, Sum P(4) = 4.9e-22
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 244 KKELDGVKEDMEAEIKTRSMASHLLKLSPE 273
K +LD + + + RSM H LKLS E
Sbjct: 825 KDQLDSTGKPL-VSLPQRSMQLHQLKLSAE 853
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 290 (107.1 bits), Expect = 2.3e-71, Sum P(6) = 2.3e-71
Identities = 68/182 (37%), Positives = 107/182 (58%)
Query: 981 LDNISDENEKIA-AKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1037
L IS E+ K++ + +I+ E K++V SQWT ML ++ L+ ++Y LDG+
Sbjct: 971 LFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGS 1030
Query: 1038 MSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
++ R V++FN P+ VM++SL A +GLN+ H+ LLD+ WNP EDQA DR
Sbjct: 1031 VNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLTGGNHLFLLDMHWNPALEDQACDR 1090
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF-GEDETGGQQTRLTVDDLNY 1155
+R+GQ + V + R + TVE++IL LQ +K+ + G+ ET ++LT+ DL
Sbjct: 1091 IYRVGQKKDVVIHRFVCEGTVEEKILQLQTRKKGLAQQVLAGKGET----SKLTLADLKT 1146
Query: 1156 LF 1157
LF
Sbjct: 1147 LF 1148
Score = 286 (105.7 bits), Expect = 2.3e-71, Sum P(6) = 2.3e-71
Identities = 61/149 (40%), Positives = 89/149 (59%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL +V W RV+LDEA +IKN + Q + A LRA RW ++GTPIQN + D+YS RFLR
Sbjct: 711 PLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRFLR 770
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVI 745
PF YK + K + N KG +L + ++++LRRTK L G+P+++LP + +
Sbjct: 771 CSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQRSM 826
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEY 774
L Q+ + EE+ Y+ L SR + Y
Sbjct: 827 QLHQLKLSAEEQSVYNVLFARSRSTLQSY 855
Score = 163 (62.4 bits), Expect = 2.3e-71, Sum P(6) = 2.3e-71
Identities = 29/66 (43%), Positives = 46/66 (69%)
Query: 502 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 561
P+ TL++CP S++ W +E+ +V S G L V +YHG +R K L+++D+V+TTYS+
Sbjct: 623 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 681
Query: 562 VSMEVP 567
+S EVP
Sbjct: 682 LSKEVP 687
Score = 162 (62.1 bits), Expect = 2.3e-71, Sum P(6) = 2.3e-71
Identities = 46/107 (42%), Positives = 62/107 (57%)
Query: 359 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 418
S SD L +++ A A P G L VPLL HQR AL+W++ +E S C GGI
Sbjct: 522 SAISDAINHLHKSLESCPTEQAVAEDPSG-LKVPLLLHQRQALAWLLWRE-SQRPC-GGI 578
Query: 419 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
LADD GLGKT++ IALIL ++ +TE +K+ LE L D+ +
Sbjct: 579 LADDMGLGKTLTMIALILTQK--QMKTEKGSKK-LEVW-LSRNDSTV 621
Score = 63 (27.2 bits), Expect = 2.3e-71, Sum P(6) = 2.3e-71
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 767 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK-GFDSNSLLRSSVEMA 820
S+ +F + + + ++L MLLRLRQ C H L+K D +L + ++
Sbjct: 884 SQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLKVALDQANLANEGLSLS 938
Score = 46 (21.3 bits), Expect = 2.3e-71, Sum P(6) = 2.3e-71
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 137 STVSDSVEPID-EAVGRNSSYHDGCNSFP-FKDSGQSFIGLSPSLLSQNQVVHA-KEEHE 193
ST S E D E + C S P K+S S L S + + H KE++
Sbjct: 172 STSGSSTEKEDLEELKTVKKQSKECRSDPELKESAVSESKLCLSETWKGKNTHQDKEKYG 231
Query: 194 DLILESKRARFCQEICDGSSSRSPI 218
+ ESK++ ++ G S P+
Sbjct: 232 GSVRESKKSEHVEKEPGGRSELFPV 256
Score = 45 (20.9 bits), Expect = 4.5e-22, Sum P(4) = 4.5e-22
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 244 KKELDGVKEDMEAEIKTRSMASHLLKLSPE 273
K +LD + + + RSM H LKLS E
Sbjct: 808 KDQLDSTGKPL-VSLPQRSMQLHQLKLSAE 836
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 297 (109.6 bits), Expect = 2.7e-71, Sum P(5) = 2.7e-71
Identities = 58/153 (37%), Positives = 96/153 (62%)
Query: 1008 IVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAA 1066
++ SQWT ML ++ L+ +++ +DGT++ R V++FNT P+ VM++SL A
Sbjct: 999 VIVSQWTSMLKIVAVHLEKMGLKFAVIDGTVNPKRRMDLVEEFNTNPKGPQVMLVSLCAG 1058
Query: 1067 SLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1126
+G+N++ H+ L+D+ WNP EDQA DR +R+GQ++ V++ R TVED+I +LQ+
Sbjct: 1059 GVGINLIGGNHLFLIDMHWNPALEDQACDRIYRVGQSKDVTIHRFVCDGTVEDKISSLQE 1118
Query: 1127 KKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159
KK+E+ TG T+L++ DL +F V
Sbjct: 1119 KKKELAQKVLSG--TGSSFTKLSLADLRVIFGV 1149
Score = 275 (101.9 bits), Expect = 2.7e-71, Sum P(5) = 2.7e-71
Identities = 59/165 (35%), Positives = 94/165 (56%)
Query: 611 KQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 670
K K D + D+ PL +V W RV+LDEA SIKN + Q + A LRA+ RW ++GTP
Sbjct: 695 KPSKDSDHVASDLP--PLLRVAWARVILDEAHSIKNPKVQTSMAVCKLRARSRWAVTGTP 752
Query: 671 IQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGT 730
IQN + D+YS +FLR PF YK + K + +G ++L + + ++LRRTK
Sbjct: 753 IQNNLLDMYSLLKFLRCSPFDEYKLW----KAQVDNGSKRGGERLNILTRALLLRRTKDQ 808
Query: 731 L-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 774
L G+P+++LP + + ++ +++E+ Y + SR + Y
Sbjct: 809 LDATGKPLVSLPDRTCEIHRLKLSEDEQAVYDVVFAQSRSTLQNY 853
Score = 164 (62.8 bits), Expect = 2.7e-71, Sum P(5) = 2.7e-71
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 505 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 564
GTL++CP S++ W +E+ +V S L+V +YHG +R + LA+ DVVITTYS+VS
Sbjct: 626 GTLIICPASLVHHWKKEIDKRVKSS-RLTVYLYHGPNRQRSASVLAEHDVVITTYSLVSK 684
Query: 565 EVPKQ 569
E+P Q
Sbjct: 685 EIPVQ 689
Score = 162 (62.1 bits), Expect = 2.7e-71, Sum P(5) = 2.7e-71
Identities = 62/213 (29%), Positives = 96/213 (45%)
Query: 240 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSP-ESIQSNSSDCK---SHVDDEPDICIL 295
S +N L E ++ ++K A L L+ ES + ++ + +H P C
Sbjct: 410 SVVNVSALPDKGERLKRQVKDLEEALESLSLTATESQDKDRAEAEHKTAHSFSNPFSCPG 469
Query: 296 EDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG-YPGVPLTGL 354
I P L + S+ + +S G V Q ++ Y G L +
Sbjct: 470 GTILLPTAPAAMLKESSSASLGLNLSQGYSQMFG--AVNPQSQAF--YGGRMTENRLLAV 525
Query: 355 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHC 414
++A D L +++ N EA P G L V LL HQ+ AL+W++ +ET C
Sbjct: 526 RNATTEAIDH---LHDSLESCPTENTEAHDPKG-LKVELLPHQKRALTWLLWRETQK-PC 580
Query: 415 SGGILADDQGLGKTISTIALILKERPPSFRTED 447
GGILADD GLGKT++ IALIL ++ + E+
Sbjct: 581 -GGILADDMGLGKTLTMIALILSQKKKDEKLEE 612
Score = 67 (28.6 bits), Expect = 2.7e-71, Sum P(5) = 2.7e-71
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 785 VNILLMLLRLRQACDH-PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEAS 838
++IL +LLRLRQ C H LL K D + L V ++ E Q+ L+ E S
Sbjct: 899 IHILSLLLRLRQCCCHLSLLKKTLDQSELQGDGVALSL----EEQLCALSLSEPS 949
Score = 49 (22.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 935 IKAALEVLQSLA---KPRGNTVTNHSLRHSFNGSICCPG 970
++ ALE L A + + H HSF+ CPG
Sbjct: 431 LEEALESLSLTATESQDKDRAEAEHKTAHSFSNPFSCPG 469
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 322 (118.4 bits), Expect = 2.2e-70, Sum P(6) = 2.2e-70
Identities = 74/182 (40%), Positives = 116/182 (63%)
Query: 982 DNISDENEKIAAKCSIDSI-----KLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG 1036
DN + + KI KC ++ I K GEK IVFSQ+T + DL+ L++ I++ R DG
Sbjct: 919 DNGFESSAKIH-KC-LEMILELFSKNPGEKVIVFSQFTSLFDLMALVLQNQHIEFLRYDG 976
Query: 1037 TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
TMS+ ++ +K+F + +V+++SL+A + GL + A HV ++D +WNP E+QA+ R
Sbjct: 977 TMSMDVKNNVIKEFYQSSK-NVLLLSLRAGNAGLTLTCANHVFIMDPFWNPFVEEQAMGR 1035
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQ-TRLTVDDLNY 1155
AHRIGQTR V V R+ + TVE+RI+ LQ+ K+ ++ SA DE G + ++L +L +
Sbjct: 1036 AHRIGQTREVFVHRVLIAGTVENRIMELQESKKHLIESAL--DERGMKSISQLNRRELGF 1093
Query: 1156 LF 1157
LF
Sbjct: 1094 LF 1095
Score = 317 (116.6 bits), Expect = 2.2e-70, Sum P(6) = 2.2e-70
Identities = 75/179 (41%), Positives = 109/179 (60%)
Query: 635 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 694
R++LDEAQ+IKN + ++A LRA+ R+CL+GTP+QN I++LY RFL+ P+ +
Sbjct: 575 RIILDEAQAIKNKQALASKAMTYLRAQYRFCLTGTPMQNGIEELYPLLRFLKIQPYCSEE 634
Query: 695 SFCSMIKVPI-SKNPV-------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
F + I PI SK + + KK+Q +LK+I+LRRTK +L+DG PI+NLP K ++
Sbjct: 635 KFRADILTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTKDSLIDGVPILNLPEKHVL 694
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
V ++E +Y +E SR Q G +N L +LLRLRQAC H LV+
Sbjct: 695 SDYVTLENDELAYYQSIE--SRVQKAAKKILGEHTKN-APALTLLLRLRQACCHSYLVE 750
Score = 137 (53.3 bits), Expect = 2.2e-70, Sum P(6) = 2.2e-70
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 381 EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436
E + P+ L V LL+HQR+ L+WM + E S GGILADD GLGKTI T+AL++
Sbjct: 415 EPTPPE--LKVNLLKHQRMGLTWMKRMEASK--AKGGILADDMGLGKTIQTLALMM 466
Score = 114 (45.2 bits), Expect = 2.2e-70, Sum P(6) = 2.2e-70
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAK-FDVVITTYSIVSM 564
L+V P S+LRQW E+ +K S LSV +YHG + K +L K +D+V+ +Y+ +
Sbjct: 473 LIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDKKKMKDFDLMKEYDIVLVSYTTLVQ 532
Query: 565 EVPK 568
E K
Sbjct: 533 EWKK 536
Score = 57 (25.1 bits), Expect = 2.2e-70, Sum P(6) = 2.2e-70
Identities = 30/97 (30%), Positives = 47/97 (48%)
Query: 809 SNSLL--RSSVEMAKKLPQ--ERQMY-LLNCL--EASLA---ICGICND--PPEDAVVSI 856
SNS L RS + A+ L + ++Q++ L+ L E ++ C +C D E +++
Sbjct: 768 SNSKLDWRSMLNNARNLKESVKQQVHSLIGSLNGEGNIENTPACPVCFDNIDIESSLLIF 827
Query: 857 --CGHVFCNQCIC----ERLTA--DDNQCPTR--NCK 883
CGH+ C C C E A DD++ P R CK
Sbjct: 828 GECGHIICKGC-CNTFFENCNAGDDDDESPHRIGECK 863
Score = 49 (22.3 bits), Expect = 2.2e-70, Sum P(6) = 2.2e-70
Identities = 41/183 (22%), Positives = 68/183 (37%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYL 73
DP + ++ T K ++ E+ S+ +A P + S P I
Sbjct: 23 DPQPSSPASFVTGNGTDVKQATDQHEYKNPFPTISAVNSASANTLPLRPSFSHQPPIK-- 80
Query: 74 DAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLF 133
+ + S+N P N N + + A+P T R V A + +DD
Sbjct: 81 KPRLESLHSRNTSPFSLNHNINNNNMNPQLLARPIT-----KPREPIEVIALSDSDDDKK 135
Query: 134 PCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE 193
P + + +E +DE N S+ D SF D S PS + +Q V K + E
Sbjct: 136 PDNESDDEDIEVLDEQQVANISWKD--TSF---DQSNSI----PSTTTSHQQVTEKLKPE 186
Query: 194 DLI 196
++
Sbjct: 187 PVL 189
Score = 38 (18.4 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 1045 KAVKDFNTLPEVSVMIMS 1062
K +KDF+ + E ++++S
Sbjct: 509 KKMKDFDLMKEYDIVLVS 526
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 305 (112.4 bits), Expect = 2.0e-68, Sum P(5) = 2.0e-68
Identities = 61/155 (39%), Positives = 94/155 (60%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
G +K+++ SQWT ML ++ LK + + Y +DG+++ R V+ FN VM++S
Sbjct: 984 GSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLIS 1043
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
L A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL
Sbjct: 1044 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKIL 1103
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+KK+++ E G T+LT+ DL LF
Sbjct: 1104 QLQEKKKDLAKQVLSGSE--GPVTKLTLADLKILF 1136
Score = 264 (98.0 bits), Expect = 2.0e-68, Sum P(5) = 2.0e-68
Identities = 59/168 (35%), Positives = 96/168 (57%)
Query: 610 SKQKKGPDGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLS 667
+KQ+ G L + + PL +V W R++LDEA ++KN R Q + A L+A+ RW ++
Sbjct: 682 TKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVT 741
Query: 668 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRT 727
GTPIQN + D+YS +FLR PF + S+ K + +KG ++L + K+++LRRT
Sbjct: 742 GTPIQNNLLDMYSLMKFLRCSPFDEF----SLWKSQVDNGSMKGGERLSILTKSLLLRRT 797
Query: 728 KGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 774
K L G+P++ LP + L ++ +++ER Y SR + Y
Sbjct: 798 KDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIFLARSRSALQSY 845
Score = 159 (61.0 bits), Expect = 2.0e-68, Sum P(5) = 2.0e-68
Identities = 27/65 (41%), Positives = 46/65 (70%)
Query: 503 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 562
++GTL+VCP S++ W E+ +VTS L + +YHG +R++ L+ +D+VITTYS++
Sbjct: 617 SSGTLIVCPASLIHHWKNEVEKRVTSN-RLRIYLYHGPNRSRHAKVLSTYDIVITTYSLL 675
Query: 563 SMEVP 567
+ E+P
Sbjct: 676 AKEIP 680
Score = 147 (56.8 bits), Expect = 2.0e-68, Sum P(5) = 2.0e-68
Identities = 64/223 (28%), Positives = 102/223 (45%)
Query: 240 STLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDIS 299
+ +N + L E + +I+ A L LSPE Q C + EP+ +I+
Sbjct: 405 AAVNIQALPDKGEKLLKQIQALEDALSALALSPE--QGTKEKCSAQ---EPE---QSNIT 456
Query: 300 QPARSNQSLVLGKTLSMNR-SACSNHSVALGKPVVTSQHSSYSDYPGYPGVP-LTGLGGM 357
+ A + LV + L S+ + G+ S S G+ L + +
Sbjct: 457 KAAAAPLHLVPPQPLPRPLIQPASSLGLKAGRQETPEGASQCSG--GHMNQHHLYNVWKI 514
Query: 358 KSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGG 417
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GG
Sbjct: 515 TSEAIDE---LHRSLKSCPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GG 568
Query: 418 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 460
ILADD GLGKT++ IALIL ++ E + + L+ ++
Sbjct: 569 ILADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWLSKND 611
Score = 62 (26.9 bits), Expect = 2.0e-68, Sum P(5) = 2.0e-68
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 776 AAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
AA + + + V++L LLRLRQ C H L+K
Sbjct: 881 AADSQRPSTVHVLSQLLRLRQCCCHLSLLK 910
Score = 37 (18.1 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 609 GSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 651
G K+G +L I GP R V ++ ++++ TQ+
Sbjct: 212 GMASKQGHGEVLQGIPKGPHMSESESRGVPNKPETLREKETQL 254
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 349 (127.9 bits), Expect = 5.7e-68, Sum P(4) = 5.7e-68
Identities = 71/152 (46%), Positives = 100/152 (65%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
KAIVFSQ+T LDL+ +L S + +L G+MS A+D A+K+F P+ V++MSL+A
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQA 586
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+ LN+ AA HV ++D WWNP E QA DR HRIGQ +PV V+R ++ TVE++IL LQ
Sbjct: 587 GGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQ 646
Query: 1126 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+KK ++ S G+ E Q +L DD+ LF
Sbjct: 647 KKKEDLFESTLGDSEEAVVQ-KLGEDDIKSLF 677
Score = 248 (92.4 bits), Expect = 5.7e-68, Sum P(4) = 5.7e-68
Identities = 67/209 (32%), Positives = 107/209 (51%)
Query: 621 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 680
+D PL + W R+++DEA IKN ++ A+A + L A RW LSGTP+QN +D+LYS
Sbjct: 257 VDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYS 316
Query: 681 Y--FRFLRYDPFAVYKSFCSM-IKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPI 737
+ FL + ++ Y SF + ++N + +L + R + + I
Sbjct: 317 LVSYSFLNFF-YSTYASFAFRHTHITFARNVTVKFLIGGNILPLSIPVRIEN--VPAVLI 373
Query: 738 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQA 797
+ + + ++ + E DFY L S+ F Y AGT+ NY +I +L+RLRQA
Sbjct: 374 MQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQA 433
Query: 798 CDHPLLVKGFDSNSLLRSSVEMAKKLPQE 826
DHP LV + S S +++ A K +E
Sbjct: 434 VDHPYLVS-YSSPSGANANLLDANKNEKE 461
Score = 145 (56.1 bits), Expect = 5.7e-68, Sum P(4) = 5.7e-68
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 495 VEQAKGRPAAG-TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 553
V++AK R A G TLV+ P L QW +E+ +++TS GS VL YHG R K+ +L +D
Sbjct: 180 VDRAKSREAVGHTLVLVPPVALSQWLDEI-SRLTSPGSTRVLQYHGPKRDKNVQKLMNYD 238
Query: 554 VVITTYSIVSMEVPK 568
V+TT IV E K
Sbjct: 239 FVLTTSPIVENEYRK 253
Score = 123 (48.4 bits), Expect = 5.7e-68, Sum P(4) = 5.7e-68
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 380 AEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
AEA+ L +PLL++Q+ L+W +E S++ GGILAD+ G+GKTI I+L+L R
Sbjct: 121 AEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVR--GGILADEMGMGKTIQAISLVLARR 178
Score = 121 (47.7 bits), Expect = 9.3e-55, Sum P(4) = 9.3e-55
Identities = 37/104 (35%), Positives = 50/104 (48%)
Query: 756 ERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRS 815
E DFY L S+ F Y AGT+ NY +I +L+RLRQA DHP LV + S S +
Sbjct: 392 EADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVS-YSSPSGANA 450
Query: 816 SVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGH 859
++ A K +E CG +DP +D V+ H
Sbjct: 451 NLLDANKNEKE---------------CGFGHDPSKDYFVTSSEH 479
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 341 (125.1 bits), Expect = 2.1e-67, Sum P(5) = 2.1e-67
Identities = 67/153 (43%), Positives = 98/153 (64%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K+IVFSQ+T MLDL++ LK + +L G+MS RD +K F EV V ++SLKA
Sbjct: 701 KSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTEVEVFLVSLKA 760
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+ LN+ A V L+D WWNP+ E Q++DR HRIGQ RP+ + R +++++E +I+ LQ
Sbjct: 761 GGVALNLCEASQVFLMDPWWNPSVEWQSMDRVHRIGQKRPIRITRFCIEDSIESKIIELQ 820
Query: 1126 QKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1158
+KK M+ + D+ +RLT DDL +LFM
Sbjct: 821 EKKANMIHATINNDDAA--ISRLTPDDLQFLFM 851
Score = 201 (75.8 bits), Expect = 2.1e-67, Sum P(5) = 2.1e-67
Identities = 61/216 (28%), Positives = 105/216 (48%)
Query: 709 VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR 768
++G+ L+++L +MLRRTK D + LPP+V+ +++ F +EE+D Y L +S+
Sbjct: 485 LEGFNNLRSLLDHVMLRRTKIERADD---LGLPPRVVEIRRDFFNEEEKDLYQSLYSDSK 541
Query: 769 DQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVKGFDSNSLLRS--SVEMAKKLPQ 825
+F +Y A G V NY NI ++ R+RQ DHP L++K SN++ V M +
Sbjct: 542 RKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGVIMCQLCDD 601
Query: 826 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 885
E + + + + C +C ++ + + C C L+ D Q P I
Sbjct: 602 EAEEPIES--KCHHRFCRMCIQEYMESFMGASNKLECPVCHIG-LSIDLEQ-PA----IE 653
Query: 886 LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE 921
+ +F+KA++ N + G E + LVE
Sbjct: 654 VD-EELFTKASIVNRIKSGAHGGEWRSSTKIEALVE 688
Score = 182 (69.1 bits), Expect = 2.1e-67, Sum P(5) = 2.1e-67
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 614 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 673
K +GL+ + A + + ++RV+LDEA +IK+ + +RA L K+RWCL+GTP+QN
Sbjct: 356 KRKNGLVKEKSA--IHNIEFYRVILDEAHNIKDRNSNTSRAAGKLNTKKRWCLTGTPLQN 413
Query: 674 AIDDLYSYFRFLRYDPFAVYKSFCS 698
I ++YS R+++ DPF Y FC+
Sbjct: 414 RIGEMYSLIRYMKLDPFHSY--FCT 436
Score = 144 (55.7 bits), Expect = 2.1e-67, Sum P(5) = 2.1e-67
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 452 QLETLN-LDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVC 510
QLE LN L ++++G + NG ++ E + + + F +++KG P LV+
Sbjct: 244 QLEGLNWLIKQEDG-EFNG-GILADEMGMGKTI---QTIGLFMH-DRSKG-P---NLVIG 293
Query: 511 PTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQP 570
PT L QW E+ K T G L VL+YHGS+R+ EL+++DV++T+YS++ KQ
Sbjct: 294 PTVALMQWKNEIE-KHTEPGMLKVLLYHGSNRSNSIQELSQYDVILTSYSVLESVYRKQN 352
Query: 571 LG 572
G
Sbjct: 353 YG 354
Score = 112 (44.5 bits), Expect = 4.3e-64, Sum P(5) = 4.3e-64
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
A P G + + LL Q L+W++++E + GGILAD+ G+GKTI TI L + +R
Sbjct: 230 AEHPPG-MTIKLLPFQLEGLNWLIKQEDGEFN--GGILADEMGMGKTIQTIGLFMHDR 284
Score = 100 (40.3 bits), Expect = 5.9e-57, Sum P(5) = 5.9e-57
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 841 ICGICNDPPEDAVVSICGHVFCNQCICERL-----TADDNQCPTRNCKIRLSLSSVFSKA 895
+C +C+D E+ + S C H FC CI E + ++ +CP C I LS+ +
Sbjct: 595 MCQLCDDEAEEPIESKCHHRFCRMCIQEYMESFMGASNKLECPV--CHIGLSID--LEQP 650
Query: 896 TLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPR 949
+ + +E+ T S +++ + G W +S+KI+A +E L L R
Sbjct: 651 AI-------EVDEELFTKASIVNRIKSGAHGGEWRSSTKIEALVEELYKLRSDR 697
Score = 45 (20.9 bits), Expect = 2.1e-67, Sum P(5) = 2.1e-67
Identities = 16/74 (21%), Positives = 24/74 (32%)
Query: 61 KGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQ 120
K AID D D +P+ GKR+ + S+ RT
Sbjct: 144 KNGSTSAEAIDLADDLDLNNDPDENVPLASRKAPKKRAKGGKRTKKEPKPKMSYYERTTN 203
Query: 121 MVFAKDEGNDDLFP 134
+F ++FP
Sbjct: 204 RLFEHHPSLKEVFP 217
Score = 37 (18.1 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 963 NGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1006
NGS ++ DL L+N DEN +A++ + GG++
Sbjct: 145 NGSTSA--EAIDLADDLDLNNDPDENVPLASRKAPKKRAKGGKR 186
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 285 (105.4 bits), Expect = 3.5e-67, Sum P(6) = 3.5e-67
Identities = 61/181 (33%), Positives = 102/181 (56%)
Query: 979 DTLDNISDENEKIAAKCSIDSIK--LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG 1036
+ DN ++ + +++I+ G +K+++ SQWT ML ++ LK + Y ++G
Sbjct: 970 ELFDNTRASSKISSLLVELEAIRGNSGSQKSVIVSQWTSMLQIVAWHLKKRGLTYATING 1029
Query: 1037 TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
++ R V+ FN+ VM++SL A +GLN+ H+ LLD+ WNP+ EDQA DR
Sbjct: 1030 SVRPKQRMDLVEAFNSSRSPQVMLISLSAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1089
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
+R+GQ + V V + + TVE++IL LQ+KK+ + +G +LT+ DL L
Sbjct: 1090 IYRVGQQKDVVVHKFICEGTVEEKILHLQEKKKTLAKQVLSG--SGTSVKKLTLADLKVL 1147
Query: 1157 F 1157
F
Sbjct: 1148 F 1148
Score = 269 (99.8 bits), Expect = 3.5e-67, Sum P(6) = 3.5e-67
Identities = 56/158 (35%), Positives = 91/158 (57%)
Query: 622 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 681
DI PL ++ W R++LDEA ++N R Q + A L+A RW ++GTPIQN + D+YS
Sbjct: 706 DIAKTPLLRIVWARIILDEAHCVRNPRVQTSMAVCKLQAHARWAVTGTPIQNTLLDMYSL 765
Query: 682 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINL 740
+FLR PF ++ + K + KG ++L + K+++LRRTK L G+P++ L
Sbjct: 766 LKFLRCSPFDDFQLW----KSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGKPLVML 821
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 778
P + + ++ +++E + YS L SR + Y AG
Sbjct: 822 PQRQFHVHRLKLSEDEENVYSVLLAKSRSALQSYLKAG 859
Score = 169 (64.5 bits), Expect = 3.5e-67, Sum P(6) = 3.5e-67
Identities = 44/102 (43%), Positives = 60/102 (58%)
Query: 359 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 418
SKA DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ H GGI
Sbjct: 524 SKAIDE---LHESLESRPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPH--GGI 577
Query: 419 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 460
LADD GLGKT++ IALIL ++ E+D L L+ D+
Sbjct: 578 LADDMGLGKTLTMIALILTQKNREKTKEEDKNVALTWLSKDD 619
Score = 151 (58.2 bits), Expect = 3.5e-67, Sum P(6) = 3.5e-67
Identities = 26/65 (40%), Positives = 45/65 (69%)
Query: 505 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 564
GTL++CP S++ W E+ +V+S +L V +YHG +R + L+ +D+VITTY++++
Sbjct: 627 GTLIICPASLIHHWKNEVMKRVSSN-TLRVCLYHGPNRDQRAKVLSTYDIVITTYNLLAK 685
Query: 565 EVPKQ 569
E+P Q
Sbjct: 686 EIPTQ 690
Score = 56 (24.8 bits), Expect = 3.5e-67, Sum P(6) = 3.5e-67
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 787 ILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 846
+L LLRLRQ C H SLL+S+++ A+ + + L L A + + +C+
Sbjct: 904 LLTRLLRLRQCCCHL---------SLLKSALDPAELKSEGLALSLEEQLSA-MTLSEVCD 953
Query: 847 DPPEDAVVSICGHVF 861
P ++S+ G F
Sbjct: 954 MEPSP-IISLNGERF 967
Score = 40 (19.1 bits), Expect = 3.5e-67, Sum P(6) = 3.5e-67
Identities = 35/142 (24%), Positives = 55/142 (38%)
Query: 164 PFK--DSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGR 221
PFK D Q PSL Q K E E+ +++ K+ + D R P
Sbjct: 124 PFKVLDKNQE-----PSLWKQ----FTKGEGEEKMVDKKQKEKGDVLLDQKEERKPEPNC 174
Query: 222 HLSLNLNGS-----RQYFPYAQP----STLNK--KELDGVKEDMEAEIKTRSMASHLLKL 270
+ NL+ +Q P Q + L KE G+ + +E+K++ L+
Sbjct: 175 CMKKNLSSGLEVKKKQPAPQEQQRGEKTELQHEAKENKGMHKRNLSEVKSKQCHVEELRK 234
Query: 271 SPESIQSNSSDCKSHVD--DEP 290
S+Q S+ HV+ EP
Sbjct: 235 PSGSLQVKSNIESHHVEKKSEP 256
Score = 39 (18.8 bits), Expect = 4.6e-20, Sum P(3) = 4.6e-20
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 72 YLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAK 125
YL A R+ + +G GN S + G PC + S T ++ +
Sbjct: 855 YLKAGREGGGNLSGRSP-GNPFSKVAQEFGSSRPGPCVAADSQRPGTPHLLLTR 907
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 297 (109.6 bits), Expect = 2.1e-66, Sum P(6) = 2.1e-66
Identities = 60/155 (38%), Positives = 95/155 (61%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
G +K+++ SQWT ML+++ LK + Y +DG+++ R V+ FN+ VM++S
Sbjct: 1015 GSQKSVIVSQWTSMLEVVALHLKRHRVTYATIDGSVNPKQRMDLVEAFNSSGGPQVMLIS 1074
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
L A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL
Sbjct: 1075 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQASDRIYRVGQQKDVVIHRFVCEGTVEEKIL 1134
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+KK+++ +G T+LT+ DL LF
Sbjct: 1135 QLQEKKKDLAKQILSG--SGEFVTKLTLADLKILF 1167
Score = 273 (101.2 bits), Expect = 2.1e-66, Sum P(6) = 2.1e-66
Identities = 59/169 (34%), Positives = 98/169 (57%)
Query: 610 SKQKKGP-DGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 666
+K+++G G L + A PL ++ W R++LDEA ++KN R Q + A L+A+ RW +
Sbjct: 711 TKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAV 770
Query: 667 SGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 726
+GTPIQN + D+YS +FLR PF + S+ K + KG ++L + K+++LRR
Sbjct: 771 TGTPIQNNLLDMYSLLKFLRCSPFDEF----SLWKSQVDNGSKKGGERLNILTKSLLLRR 826
Query: 727 TKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 774
TK L G+P++ LP + L ++ +++E Y+ L SR + Y
Sbjct: 827 TKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVLFARSRSDLQSY 875
Score = 143 (55.4 bits), Expect = 2.1e-66, Sum P(6) = 2.1e-66
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
TL++CP S++ W E++ +V + L V +YHG +R ++ L+ +D+VITTYS+++ E
Sbjct: 650 TLIICPASLIHHWKNEVQKRVCNN-ELRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 708
Query: 566 VP 567
+P
Sbjct: 709 IP 710
Score = 137 (53.3 bits), Expect = 2.1e-66, Sum P(6) = 2.1e-66
Identities = 39/92 (42%), Positives = 53/92 (57%)
Query: 359 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 418
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 544 SEAIDE---LHRSLESRPDETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKP--PGGI 597
Query: 419 L--ADDQGLGKTISTIALILKERPPSFRTEDD 448
L ADD GLGKT++ IALIL ++ E D
Sbjct: 598 LFPADDMGLGKTLTMIALILTQKNQEKNKEKD 629
Score = 60 (26.2 bits), Expect = 2.1e-66, Sum P(6) = 2.1e-66
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 777 AGTVK-QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL 835
AG ++ + V+IL LLRLRQ C H L+K + L+S + L ++ L+ L
Sbjct: 912 AGDLQGSSTVHILSQLLRLRQCCCHLSLLKSALDPTELKSE-GLVLSLEEQLSALTLSEL 970
Query: 836 E-----ASLAICGIC 845
AS+++ G C
Sbjct: 971 HSSESSASVSLNGTC 985
Score = 52 (23.4 bits), Expect = 2.1e-66, Sum P(6) = 2.1e-66
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 245 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 290
KEL+G+ + E+K+R + L+ P S ++ + D + EP
Sbjct: 210 KELEGMHQRKVFEMKSRQVHKDELREPPVSQETANGDSYIRKESEP 255
Score = 45 (20.9 bits), Expect = 3.5e-41, Sum P(5) = 3.5e-41
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 774 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 833
+A GT QN + + LL+ + C P FD SL +S V+ K ER LN
Sbjct: 768 WAVTGTPIQNNLLDMYSLLKFLR-CS-P-----FDEFSLWKSQVDNGSKKGGER----LN 816
Query: 834 CLEASLAI 841
L SL +
Sbjct: 817 ILTKSLLL 824
Score = 41 (19.5 bits), Expect = 9.9e-21, Sum P(2) = 9.9e-21
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 870 LTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYS-DSKLVE 921
L D+ Q P C + LSS +++ ++Q G++ T++ D+K +E
Sbjct: 163 LDQDNVQKPESKCWMEKDLSSGLVVKEKPSAVQEKQRGEK--TEFQCDTKELE 213
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 293 (108.2 bits), Expect = 1.4e-65, Sum P(6) = 1.4e-65
Identities = 63/174 (36%), Positives = 104/174 (59%)
Query: 987 ENEKIAAKCS-IDSIKLGG--EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
E+ KI++ + +++I+ +K+++ SQWT ML ++ LK + Y +DG+++ R
Sbjct: 989 ESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQR 1048
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V+ FN VM++SL A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ
Sbjct: 1049 MDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQ 1108
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+ V + R + TVE++IL LQ+KK+++ +G T+LT+ DL LF
Sbjct: 1109 KDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSG--SGESVTKLTLADLRVLF 1160
Score = 251 (93.4 bits), Expect = 1.4e-65, Sum P(6) = 1.4e-65
Identities = 56/168 (33%), Positives = 92/168 (54%)
Query: 610 SKQKKGPDGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLS 667
+KQ+ G L++ + PL ++ W R++LDEA ++KN R Q + A L+A RW ++
Sbjct: 706 NKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVT 765
Query: 668 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRT 727
GTPIQN + D+YS +FLR PF + + S + KG ++L + K+++LRRT
Sbjct: 766 GTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQV----DNGSKKGGERLSILTKSLLLRRT 821
Query: 728 KGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 774
K L G P++ LP + L + +++E Y+ SR + Y
Sbjct: 822 KDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 869
Score = 151 (58.2 bits), Expect = 1.4e-65, Sum P(6) = 1.4e-65
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 505 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 564
GTL++CP S++ W E+ +V S L V +YHG +R L+ +D+VITTYS+V+
Sbjct: 643 GTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAK 701
Query: 565 EVP 567
E+P
Sbjct: 702 EIP 704
Score = 149 (57.5 bits), Expect = 1.4e-65, Sum P(6) = 1.4e-65
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 441
A P G L VPLL HQ+ AL+W++ +E+ GGILADD GLGKT++ IALIL ++
Sbjct: 560 AEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTQKNQ 616
Query: 442 SFRTEDDNKRQLETLNLDE 460
+ E + L L+ D+
Sbjct: 617 EKKEEKEKSTALTWLSKDD 635
Score = 68 (29.0 bits), Expect = 1.4e-65, Sum P(6) = 1.4e-65
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 763 LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
LE S + + AA + + + V+IL LLRLRQ C H L+K
Sbjct: 893 LEFGSEEP-RHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLK 934
Score = 42 (19.8 bits), Expect = 1.4e-65, Sum P(6) = 1.4e-65
Identities = 31/128 (24%), Positives = 50/128 (39%)
Query: 259 KTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI----CILEDISQPARSNQSLVLGKTL 314
K +S+ + IQ + +H D +I C ++++P+ S+Q GK+
Sbjct: 186 KKQSVVQEKKQEEGAEIQCEAETGGTHKRDFSEIKSQQCQGNELTRPSASSQEKSSGKSQ 245
Query: 315 SMNR-SACSNHSVALGKPVVTSQHSSYSDYPGYPGVPL----TGLGGMKSKASDERLILQ 369
+ R S V P H+S S P G PL T ++KA D I Q
Sbjct: 246 DVQRESEPLREKVTQLLPQNVHSHNSISK-P-QKGGPLNKEYTNWEAKETKAKDGPSI-Q 302
Query: 370 VAMQGISQ 377
+ + Q
Sbjct: 303 ATQKSLPQ 310
Score = 42 (19.8 bits), Expect = 1.8e-41, Sum P(5) = 1.8e-41
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 774 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 833
+A GT QN + + LL+ + C P FD +L RS V+ K ER L
Sbjct: 762 WAVTGTPIQNNLLDMYSLLKFLR-CS-P-----FDEFNLWRSQVDNGSKKGGERLSILTK 814
Query: 834 CL 835
L
Sbjct: 815 SL 816
Score = 38 (18.4 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 898 NNSLSQRQPGQEIPTDYSDSKLVEAPSCEG 927
+NS+S+ Q G + +Y++ + E + +G
Sbjct: 269 HNSISKPQKGGPLNKEYTNWEAKETKAKDG 298
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 297 (109.6 bits), Expect = 1.6e-65, Sum P(5) = 1.6e-65
Identities = 60/155 (38%), Positives = 95/155 (61%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
G +K+++ SQWT ML+++ LK + Y +DG+++ R V+ FN+ VM++S
Sbjct: 993 GSQKSVIVSQWTSMLEVVALHLKRHRVTYATIDGSVNPKQRMDLVEAFNSSGGPQVMLIS 1052
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
L A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL
Sbjct: 1053 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQASDRIYRVGQQKDVVIHRFVCEGTVEEKIL 1112
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+KK+++ +G T+LT+ DL LF
Sbjct: 1113 QLQEKKKDLAKQILSG--SGEFVTKLTLADLKILF 1145
Score = 273 (101.2 bits), Expect = 1.6e-65, Sum P(5) = 1.6e-65
Identities = 59/169 (34%), Positives = 98/169 (57%)
Query: 610 SKQKKGP-DGLLLDI--VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 666
+K+++G G L + A PL ++ W R++LDEA ++KN R Q + A L+A+ RW +
Sbjct: 689 TKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAV 748
Query: 667 SGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRR 726
+GTPIQN + D+YS +FLR PF + S+ K + KG ++L + K+++LRR
Sbjct: 749 TGTPIQNNLLDMYSLLKFLRCSPFDEF----SLWKSQVDNGSKKGGERLNILTKSLLLRR 804
Query: 727 TKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 774
TK L G+P++ LP + L ++ +++E Y+ L SR + Y
Sbjct: 805 TKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVLFARSRSDLQSY 853
Score = 143 (55.4 bits), Expect = 1.6e-65, Sum P(5) = 1.6e-65
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
TL++CP S++ W E++ +V + L V +YHG +R ++ L+ +D+VITTYS+++ E
Sbjct: 628 TLIICPASLIHHWKNEVQKRVCNN-ELRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 686
Query: 566 VP 567
+P
Sbjct: 687 IP 688
Score = 137 (53.3 bits), Expect = 1.6e-65, Sum P(5) = 1.6e-65
Identities = 39/92 (42%), Positives = 53/92 (57%)
Query: 359 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 418
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 522 SEAIDE---LHRSLESRPDETAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKP--PGGI 575
Query: 419 L--ADDQGLGKTISTIALILKERPPSFRTEDD 448
L ADD GLGKT++ IALIL ++ E D
Sbjct: 576 LFPADDMGLGKTLTMIALILTQKNQEKNKEKD 607
Score = 60 (26.2 bits), Expect = 1.6e-65, Sum P(5) = 1.6e-65
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 777 AGTVK-QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL 835
AG ++ + V+IL LLRLRQ C H L+K + L+S + L ++ L+ L
Sbjct: 890 AGDLQGSSTVHILSQLLRLRQCCCHLSLLKSALDPTELKSE-GLVLSLEEQLSALTLSEL 948
Query: 836 E-----ASLAICGIC 845
AS+++ G C
Sbjct: 949 HSSESSASVSLNGTC 963
Score = 45 (20.9 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 774 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 833
+A GT QN + + LL+ + C P FD SL +S V+ K ER LN
Sbjct: 746 WAVTGTPIQNNLLDMYSLLKFLR-CS-P-----FDEFSLWKSQVDNGSKKGGER----LN 794
Query: 834 CLEASLAI 841
L SL +
Sbjct: 795 ILTKSLLL 802
Score = 41 (19.5 bits), Expect = 9.4e-21, Sum P(2) = 9.4e-21
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 870 LTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYS-DSKLVE 921
L D+ Q P C + LSS +++ ++Q G++ T++ D+K +E
Sbjct: 163 LDQDNVQKPESKCWMEKDLSSGLVVKEKPSAVQEKQRGEK--TEFQCDTKELE 213
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 297 (109.6 bits), Expect = 2.9e-65, Sum P(5) = 2.9e-65
Identities = 76/200 (38%), Positives = 110/200 (55%)
Query: 622 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 681
D AG + V W+R++LDEA +IKN + +A + L A+ RWCLSGTP+QN +D+L S
Sbjct: 487 DKKAG-IFSVYWYRIILDEAHTIKNRNAKATQAAYALDAEYRWCLSGTPMQNNLDELQSL 545
Query: 682 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGY--KKLQAVLKTIMLRRTKGTL-------- 731
RFLR P+ ++ I P++ N G ++LQ VLK M RRTK L
Sbjct: 546 IRFLRIKPYNDLANWKDQITRPLA-NGRGGLAIERLQVVLKAFMKRRTKDVLKLNANLKP 604
Query: 732 ---LDGE---PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYV 785
DGE P + + ++ VDF E++FY +LE + + ++ G K +Y
Sbjct: 605 GEEADGEKKNPGFQIVKREVVKVAVDFMPGEKNFYERLEQRTDNSLEKMM--GDSKIDYA 662
Query: 786 NILLMLLRLRQACDHPLLVK 805
L +LLRLRQ C+HP LV+
Sbjct: 663 GALTLLLRLRQCCNHPDLVR 682
Score = 295 (108.9 bits), Expect = 2.9e-65, Sum P(5) = 2.9e-65
Identities = 73/190 (38%), Positives = 112/190 (58%)
Query: 971 DSND---LHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS 1027
DS+D L+ GD + + KI I + K IVFS +T MLD +E L +
Sbjct: 880 DSDDDIYLNPGDDENQVLPST-KIRQLMKILRREAPDFKFIVFSVFTSMLDKIEPFLSRA 938
Query: 1028 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
I Y R DG+M R+ +++ V++ SL+A +LGLN+ AA V++L+ +WNP
Sbjct: 939 GIGYARYDGSMRNDLREASLEKLRNHRGTRVLLCSLRAGALGLNLTAASRVVILEPFWNP 998
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTR 1147
E+QAIDR HR+ QT V + ++ +K+TVE+RIL LQ++KRE+ A+ E +T +
Sbjct: 999 FVEEQAIDRVHRLNQTVDVKIYKMIIKDTVEERILDLQERKREL-ANVTIEGKTAA--AK 1055
Query: 1148 LTVDDLNYLF 1157
LT++D+ LF
Sbjct: 1056 LTMNDMMALF 1065
Score = 147 (56.8 bits), Expect = 2.9e-65, Sum P(5) = 2.9e-65
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 477 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLV 536
SD+ R P + +S KG + TLVV P ++++QW E++ KV L VLV
Sbjct: 393 SDHDRK-PEDTDEESAESRNLPKGL-SKSTLVVAPLALIKQWESEIKTKVEPSHRLRVLV 450
Query: 537 YHGSSRTKDPCELAKFDVVITTYSIVSME 565
YHG++R K L +DVVITTY ++ E
Sbjct: 451 YHGNARAKATDSLDDYDVVITTYGTLTSE 479
Score = 130 (50.8 bits), Expect = 2.9e-65, Sum P(5) = 2.9e-65
Identities = 37/89 (41%), Positives = 49/89 (55%)
Query: 376 SQPNAEASAPDGV---LAVPLLRHQRIALSWMVQKETSSLHC---------SGGILADDQ 423
++ ++E DGV L V LL HQR ++WM KE SL GGILADD
Sbjct: 305 TEEDSEDEDDDGVVEGLRVQLLPHQRQGVNWMCAKEIGSLKPRKEEKGVLPKGGILADDM 364
Query: 424 GLGKTISTIALILKERPPSFRTEDDNKRQ 452
GLGKT+ IAL+L + P +D ++RQ
Sbjct: 365 GLGKTVQAIALMLTNQKP----KDGSRRQ 389
Score = 43 (20.2 bits), Expect = 1.1e-45, Sum P(4) = 1.1e-45
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 240 STLNKKELDGVKEDMEAEIKTRSMASHLLKL 270
STL L +K+ E+EIKT+ SH L++
Sbjct: 419 STLVVAPLALIKQ-WESEIKTKVEPSHRLRV 448
Score = 38 (18.4 bits), Expect = 2.9e-65, Sum P(5) = 2.9e-65
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 934 KIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 981
K KA+ + A P + N R N I D + G+ L
Sbjct: 776 KKKASEHIADPTASPSERRLQNRMARFRRNRKIVMDSDDEEEDDGEWL 823
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 332 (121.9 bits), Expect = 3.9e-65, Sum P(5) = 3.9e-65
Identities = 89/271 (32%), Positives = 139/271 (51%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
++R++LDE Q+IKN T+ ++AC + RW LSGTPIQN++D+LYS RFLR P+
Sbjct: 1102 FYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHK 1161
Query: 693 YKSFCSMIKVPISKNPVKGY---------KKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
+ F I +N Y +K++ +L IMLRR+K +DG+P++ LPPK
Sbjct: 1162 EQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPK 1221
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-L 802
++ + + EE FY+ LE ++ K+ T + +Y ++L +LLRLRQAC H L
Sbjct: 1222 IVEVDESRLKGEELKFYTALESKNQALAKKLLNNST-RGSYSSVLTLLLRLRQACCHSEL 1280
Query: 803 LVKGFDSNSLLRSSVEMAKKLPQE--RQMYLLNCL--EASLAI--------CGICNDPPE 850
+V G + V K + R Y + + EA + C C + E
Sbjct: 1281 VVMG--EKKAEGTKVANGKSFEDDWLRLYYKITHMSGEAQAQVITSMNSMTCFWCMEQLE 1338
Query: 851 DAVVSI---CGHVFCNQCICERLTADDNQCP 878
+S+ CGH+ C+ CI E + + P
Sbjct: 1339 PEAMSVLTGCGHLICDTCI-EPFIEESSMLP 1368
Score = 278 (102.9 bits), Expect = 3.9e-65, Sum P(5) = 3.9e-65
Identities = 60/154 (38%), Positives = 96/154 (62%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
EK I+FSQ+T ++LE LK+ + Y + G+M+ R + +F PE ++++S+
Sbjct: 1462 EKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISM 1521
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA + GL + A HV+++D +WNP E+QA DR +RI QT+ V V +L +K++VEDRI
Sbjct: 1522 KAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISE 1581
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ++K+EMV SA + + L +L +LF
Sbjct: 1582 LQKRKKEMVDSAMDPGKIK-EVNSLGRRELGFLF 1614
Score = 151 (58.2 bits), Expect = 3.9e-65, Sum P(5) = 3.9e-65
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 365 RLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQG 424
R +L+ Q S + EA P+ + V LL+HQR+ L W++Q E S+ GG+LADD G
Sbjct: 916 RALLENVKQSESIIDGEALTPED-MTVNLLKHQRLGLHWLLQVENSAK--KGGLLADDMG 972
Query: 425 LGKTISTIALILKER 439
LGKTI IAL+L R
Sbjct: 973 LGKTIQAIALMLANR 987
Score = 105 (42.0 bits), Expect = 3.9e-65, Sum P(5) = 3.9e-65
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSM 564
L+V P SVLR W EL KV + + ++ GS + K +LA++D V+ +Y ++
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLARYDAVLVSYQTLAN 1056
Query: 565 EVPK 568
E K
Sbjct: 1057 EFKK 1060
Score = 48 (22.0 bits), Expect = 3.9e-65, Sum P(5) = 3.9e-65
Identities = 33/140 (23%), Positives = 60/140 (42%)
Query: 216 SPIDGRHLSLNLNG--SRQYF--PYAQPSTL---NKKELDGVKEDMEAEIKTRSMASHLL 268
S +D + LNLN S+Q F P + ++L NK ++ GV ++ S A
Sbjct: 188 SNLDFQEEKLNLNNKPSQQQFSDPETKDNSLKSENKDQIKGVTTTSYRDLPIESSA---- 243
Query: 269 KLSPESIQSNSSDCKSHVDDE---PDI-CILEDISQPARSNQSLVLGKTLSMNRSACSNH 324
Q+NS + ++ +E P + L + ++ + V GKT ++ N+
Sbjct: 244 -FQDSETQNNSKNTIPNIVNEKRTPALPSNLSSVESSLKNETAKVEGKT-TVRLPGLQNN 301
Query: 325 SVALGKPVVTSQHSSYSDYP 344
VAL + + +S+ P
Sbjct: 302 -VALLEQEQSELFKHFSEQP 320
Score = 46 (21.3 bits), Expect = 6.3e-65, Sum P(5) = 6.3e-65
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 245 KELDGVKEDMEAEIKTRSMASHLLK---LSPESIQSNSSDCKSHVD 287
KE G +E +S +S +L+ ++ ++ QS+ +C S +D
Sbjct: 426 KEASGSNSIPTSETDAQSSSSSVLQGTIMTEQATQSSQHECNSSLD 471
Score = 41 (19.5 bits), Expect = 9.0e-54, Sum P(5) = 9.0e-54
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 426 GKTISTIALILKERPPSFRTEDDNKRQLETLNLD 459
G+TIS+ IL + + + KRQL LD
Sbjct: 534 GRTISSTQQILVDEAENQLNKLKEKRQLTKSKLD 567
Score = 41 (19.5 bits), Expect = 3.4e-47, Sum P(5) = 3.4e-47
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSI--KN-HRTQVAR 653
+L IV PLAK F +D A+ + KN RT++ +
Sbjct: 665 VLPIVRQPLAKRDLFIKSIDTAKDLLAKNTSRTEMTK 701
Score = 37 (18.1 bits), Expect = 5.4e-64, Sum P(5) = 5.4e-64
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 240 STLNKKELDGVKEDME 255
S+ K+ DGV++D E
Sbjct: 166 SSYVSKDYDGVEDDFE 181
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 319 (117.4 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 64/153 (41%), Positives = 100/153 (65%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
+K ++FSQ+ MLDL+E LK +I +L G MS+ +R+ + +FN ++ V+++SLK
Sbjct: 1495 DKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISLK 1554
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A GLN+ A + ++D WWNP E QAI RAHRIGQT+ V +R ++NTVE++I+ L
Sbjct: 1555 AGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQL 1614
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
Q KK+ + S G+ +G +L+ +DL +LF
Sbjct: 1615 QNKKQLVFDSTIGD--SGNAMQKLSKEDLAFLF 1645
Score = 195 (73.7 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 63/200 (31%), Positives = 93/200 (46%)
Query: 676 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 728
D+ Y YF + + F I PI +G Y K + VL I+LRRTK
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNE-VLDKILLRRTK 1170
Query: 729 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 788
G + + INL P +I +++ + EE+DFY L + QF Y + TV NY +I
Sbjct: 1171 G---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIF 1227
Query: 789 LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGIC--N 846
+L RLRQA DHP L+ F ++ L S + KK ++ + +CGIC N
Sbjct: 1228 DLLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK-----NTTIIPAISNDY-VCGICLEN 1280
Query: 847 DPPEDAVVSICGHVFCNQCI 866
+ + + C H F C+
Sbjct: 1281 VQKRNNISTKCNHNFHKSCL 1300
Score = 181 (68.8 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 610 SKQKKGPDGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA-KRRWCLS 667
SK+KK + + + D A L ++ W R++LDEA IKN T ++ L+ RWCL+
Sbjct: 1013 SKEKKKRENMKIFDESA--LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLT 1070
Query: 668 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 698
GTP+QN I +LYS RF+ + P+A Y FCS
Sbjct: 1071 GTPLQNRISELYSLIRFIEFYPYAYY--FCS 1099
Score = 163 (62.4 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 407 KETSS-LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
K +SS L+C +DD + K S ++IL E + + ++K + N + +N +
Sbjct: 343 KNSSSILYCKNST-SDDLKV-KEESDCSVILIESDDTQNEKMNHKNDVMAENKIDTENVL 400
Query: 466 QVNGLDLVKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWA 519
V + +K+E + + N S+ K +F+ + KG+ TL++ P + + QW
Sbjct: 401 NVKKIKNIKKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQ----TLIIAPVAAVMQWK 456
Query: 520 EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPK 568
E+ K + L+V VYHG+S+ EL K+D+VIT+Y++V + K
Sbjct: 457 SEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVVEVNFRK 504
Score = 119 (46.9 bits), Expect = 1.6e-59, Sum P(4) = 1.6e-59
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL-------KERPP 441
L LL++Q+ + WM+ +E S++ GGILAD+ G+GKTI I LIL KE
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNV--KGGILADEMGMGKTIQAITLILCQKLNKLKEIKK 279
Query: 442 SFRTEDDNKRQLETLNLDEED 462
R++D +K + N DEED
Sbjct: 280 DERSDDHDKVGYK--NDDEED 298
Score = 51 (23.0 bits), Expect = 1.9e-52, Sum P(4) = 1.9e-52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 254 MEAEIKTRSMASHLLKLSPESIQSNS--SDCKSHVDDEPDICILEDISQPARSNQSLVLG 311
M+ + +TR AS+ K + + +NS SD KS+ + D DI + +
Sbjct: 878 MKIKGETREYASNKGKNNNDDDNNNSYYSDAKSYTSESSDESYQGDICSKKKEPKKNTKS 937
Query: 312 KTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 343
S +S C + S+ K + + +DY
Sbjct: 938 IRRSQRKSYCKS-SLESEKKEESDNSYNTNDY 968
Score = 48 (22.0 bits), Expect = 2.0e-35, Sum P(4) = 2.0e-35
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1020 LEASLKDSSI-QYRRLDGTMSVFARDKAVKDF 1050
LE K S+ +++ DG +++ + D+ VKD+
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDY 1421
Score = 46 (21.3 bits), Expect = 1.3e-48, Sum P(4) = 1.3e-48
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCS 996
P SND G L+N+ N I+ KC+
Sbjct: 1266 PAISNDYVCGICLENVQKRNN-ISTKCN 1292
Score = 44 (20.5 bits), Expect = 1.0e-51, Sum P(4) = 1.0e-51
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 151 GRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEE---HEDLILESKRARFCQE 207
G+N++ D NS+ + D+ +S+ S Q + K+E + I S+R +C+
Sbjct: 892 GKNNNDDDNNNSY-YSDA-KSYTSESSDESYQGDICSKKKEPKKNTKSIRRSQRKSYCKS 949
Query: 208 ICDGSSSRSPIDGRHLSLNLN 228
+ S + D + + + N
Sbjct: 950 SLE-SEKKEESDNSYNTNDYN 969
Score = 40 (19.1 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 345 GYPGVPLTGLGGMKSKASDERLI 367
GY G L+G+ +K++ D+ L+
Sbjct: 1144 GYRGEGLSGMSYLKNEVLDKILL 1166
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 319 (117.4 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 64/153 (41%), Positives = 100/153 (65%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
+K ++FSQ+ MLDL+E LK +I +L G MS+ +R+ + +FN ++ V+++SLK
Sbjct: 1495 DKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISLK 1554
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A GLN+ A + ++D WWNP E QAI RAHRIGQT+ V +R ++NTVE++I+ L
Sbjct: 1555 AGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQL 1614
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
Q KK+ + S G+ +G +L+ +DL +LF
Sbjct: 1615 QNKKQLVFDSTIGD--SGNAMQKLSKEDLAFLF 1645
Score = 195 (73.7 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 63/200 (31%), Positives = 93/200 (46%)
Query: 676 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTK 728
D+ Y YF + + F I PI +G Y K + VL I+LRRTK
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNE-VLDKILLRRTK 1170
Query: 729 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 788
G + + INL P +I +++ + EE+DFY L + QF Y + TV NY +I
Sbjct: 1171 G---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIF 1227
Query: 789 LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGIC--N 846
+L RLRQA DHP L+ F ++ L S + KK ++ + +CGIC N
Sbjct: 1228 DLLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK-----NTTIIPAISNDY-VCGICLEN 1280
Query: 847 DPPEDAVVSICGHVFCNQCI 866
+ + + C H F C+
Sbjct: 1281 VQKRNNISTKCNHNFHKSCL 1300
Score = 181 (68.8 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 610 SKQKKGPDGL-LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA-KRRWCLS 667
SK+KK + + + D A L ++ W R++LDEA IKN T ++ L+ RWCL+
Sbjct: 1013 SKEKKKRENMKIFDESA--LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLT 1070
Query: 668 GTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 698
GTP+QN I +LYS RF+ + P+A Y FCS
Sbjct: 1071 GTPLQNRISELYSLIRFIEFYPYAYY--FCS 1099
Score = 163 (62.4 bits), Expect = 4.3e-64, Sum P(4) = 4.3e-64
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 407 KETSS-LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
K +SS L+C +DD + K S ++IL E + + ++K + N + +N +
Sbjct: 343 KNSSSILYCKNST-SDDLKV-KEESDCSVILIESDDTQNEKMNHKNDVMAENKIDTENVL 400
Query: 466 QVNGLDLVKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWA 519
V + +K+E + + N S+ K +F+ + KG+ TL++ P + + QW
Sbjct: 401 NVKKIKNIKKECVNNKKIKNNNNNNNKSNFKKNDFINKLKGQ----TLIIAPVAAVMQWK 456
Query: 520 EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPK 568
E+ K + L+V VYHG+S+ EL K+D+VIT+Y++V + K
Sbjct: 457 SEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVVEVNFRK 504
Score = 119 (46.9 bits), Expect = 1.6e-59, Sum P(4) = 1.6e-59
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL-------KERPP 441
L LL++Q+ + WM+ +E S++ GGILAD+ G+GKTI I LIL KE
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNV--KGGILADEMGMGKTIQAITLILCQKLNKLKEIKK 279
Query: 442 SFRTEDDNKRQLETLNLDEED 462
R++D +K + N DEED
Sbjct: 280 DERSDDHDKVGYK--NDDEED 298
Score = 51 (23.0 bits), Expect = 1.9e-52, Sum P(4) = 1.9e-52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 254 MEAEIKTRSMASHLLKLSPESIQSNS--SDCKSHVDDEPDICILEDISQPARSNQSLVLG 311
M+ + +TR AS+ K + + +NS SD KS+ + D DI + +
Sbjct: 878 MKIKGETREYASNKGKNNNDDDNNNSYYSDAKSYTSESSDESYQGDICSKKKEPKKNTKS 937
Query: 312 KTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 343
S +S C + S+ K + + +DY
Sbjct: 938 IRRSQRKSYCKS-SLESEKKEESDNSYNTNDY 968
Score = 48 (22.0 bits), Expect = 2.0e-35, Sum P(4) = 2.0e-35
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1020 LEASLKDSSI-QYRRLDGTMSVFARDKAVKDF 1050
LE K S+ +++ DG +++ + D+ VKD+
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDY 1421
Score = 46 (21.3 bits), Expect = 1.3e-48, Sum P(4) = 1.3e-48
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCS 996
P SND G L+N+ N I+ KC+
Sbjct: 1266 PAISNDYVCGICLENVQKRNN-ISTKCN 1292
Score = 44 (20.5 bits), Expect = 1.0e-51, Sum P(4) = 1.0e-51
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 151 GRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEE---HEDLILESKRARFCQE 207
G+N++ D NS+ + D+ +S+ S Q + K+E + I S+R +C+
Sbjct: 892 GKNNNDDDNNNSY-YSDA-KSYTSESSDESYQGDICSKKKEPKKNTKSIRRSQRKSYCKS 949
Query: 208 ICDGSSSRSPIDGRHLSLNLN 228
+ S + D + + + N
Sbjct: 950 SLE-SEKKEESDNSYNTNDYN 969
Score = 40 (19.1 bits), Expect = 1.3e-22, Sum P(4) = 1.3e-22
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 345 GYPGVPLTGLGGMKSKASDERLI 367
GY G L+G+ +K++ D+ L+
Sbjct: 1144 GYRGEGLSGMSYLKNEVLDKILL 1166
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 288 (106.4 bits), Expect = 1.1e-63, Sum P(6) = 1.1e-63
Identities = 67/196 (34%), Positives = 113/196 (57%)
Query: 969 PGDSNDLHGGDTLDNISD---ENEKIAAKCS-IDSIKL--GGEKAIVFSQWTKMLDLLEA 1022
P S L+G + D E+ KI++ + +++++ G +K+++ SQWT ML ++
Sbjct: 969 PSASVSLNGKSFKVELFDDKRESTKISSLLAELEAVRRNSGSQKSVIVSQWTSMLKVVAL 1028
Query: 1023 SLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082
LK Y +DG+++ R V+ FN+ VM++SL A +GLN+ H+ LLD
Sbjct: 1029 HLKRCGFTYATIDGSVNPKQRMDLVEAFNSPRGPQVMLISLLAGGVGLNLTGGNHLFLLD 1088
Query: 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF-GEDET 1141
+ WNP+ EDQA DR +R+GQ + V + + + TVE++IL LQ+KK+++ G +E
Sbjct: 1089 MHWNPSLEDQACDRIYRVGQQKDVVIHKFVCEETVEEKILQLQEKKKDLAKQILSGSEEF 1148
Query: 1142 GGQQTRLTVDDLNYLF 1157
T+L++ DL LF
Sbjct: 1149 ---VTKLSLADLKVLF 1161
Score = 255 (94.8 bits), Expect = 1.1e-63, Sum P(6) = 1.1e-63
Identities = 55/151 (36%), Positives = 88/151 (58%)
Query: 625 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 684
+ PL +V W R++LDEA ++KN R Q + A L+A+ RW ++GTPIQN + D+YS +F
Sbjct: 724 SSPLLRVVWARLILDEAHNVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKF 783
Query: 685 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPK 743
LR PF +K + K + KG ++L + ++++LRRTK L G+P++ LP +
Sbjct: 784 LRCSPFDEFKLW----KSQVDNGSKKGGERLNILTRSLLLRRTKDQLDSTGKPLVVLPHR 839
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEY 774
L + +++E YS L SR + Y
Sbjct: 840 KFQLHHLKLSEDEETVYSVLFARSRLALQYY 870
Score = 146 (56.5 bits), Expect = 1.1e-63, Sum P(6) = 1.1e-63
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 505 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 564
GTL++CP S++ W E+ V S L V +YHG +R + L+ +D+VITTYS+++
Sbjct: 644 GTLIICPASLIHHWKNEVEKHV-SHNRLRVCLYHGPNRNQHAKVLSTYDIVITTYSLLAK 702
Query: 565 EVP 567
E+P
Sbjct: 703 EIP 705
Score = 138 (53.6 bits), Expect = 1.1e-63, Sum P(6) = 1.1e-63
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 359 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 418
S+A DE L +++ A A P G L + LL HQ+ AL+W++ +E+ GGI
Sbjct: 544 SEAIDE---LHRSLESCPGETAMAEDPAG-LKISLLPHQKQALAWLLWRESQKPR--GGI 597
Query: 419 LADDQGLGKTISTIALILKERPPSFRTE 446
LADD GLGKT++ IALIL ++ + E
Sbjct: 598 LADDMGLGKTLTMIALILTQKKSKEKDE 625
Score = 59 (25.8 bits), Expect = 1.1e-63, Sum P(6) = 1.1e-63
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 776 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL 835
A + V+IL LLRLRQ C H L+K + L+S +A L E Q+ L
Sbjct: 906 AGSQATSSAVHILSQLLRLRQCCCHLSLLKSALDPTELKSE-GLALSL--EEQLSALTLS 962
Query: 836 E 836
E
Sbjct: 963 E 963
Score = 50 (22.7 bits), Expect = 1.1e-63, Sum P(6) = 1.1e-63
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 245 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH 285
KE++G+ + E+K++ + ++L+ P + Q S D +SH
Sbjct: 210 KEIEGMHKRNLLEMKSKQVRGNVLR-EPSAFQVKS-DSESH 248
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 367 (134.2 bits), Expect = 1.4e-63, Sum P(5) = 1.4e-63
Identities = 74/186 (39%), Positives = 122/186 (65%)
Query: 978 GDTLDNISDENEKIAAKCS--IDSIKLGGE----KAIVFSQWTKMLDLLEASLKDSSIQY 1031
G+ D++S + + ++K I + G+ K ++FSQWT L L+E L+++ IQ+
Sbjct: 785 GENTDDVSADPDNPSSKIEALIKILTAHGQVEATKTVIFSQWTSFLTLVEPHLQNAGIQF 844
Query: 1032 RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTED 1091
R+DG M+ ARD++++ F+T P+ +V++ SL S+GLN+VAA +L D WW P ED
Sbjct: 845 ARIDGKMTSIARDRSMRRFSTDPKCTVLLASLSVCSVGLNLVAANQAILADSWWAPAIED 904
Query: 1092 QAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLT-V 1150
QA+DR +R+GQTR +V RL +++++EDR+LA+Q++KR+++ +AF E + R T V
Sbjct: 905 QAVDRVYRLGQTRETTVWRLVMEDSIEDRVLAIQEQKRKLMLAAFREKASKKVDDRATRV 964
Query: 1151 DDLNYL 1156
DL L
Sbjct: 965 ADLEKL 970
Score = 310 (114.2 bits), Expect = 1.4e-63, Sum P(5) = 1.4e-63
Identities = 91/307 (29%), Positives = 143/307 (46%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L V W RVVLDE +I+N R++ A LRA RW L+GTPI N + DLYS RFL
Sbjct: 515 LFSVKWRRVVLDEGHTIRNPRSKGFSAACALRADSRWALTGTPIVNTLKDLYSQIRFLGL 574
Query: 688 ----DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
+ FAV+ S +I+ +S +P LQA++ TI LRR K G + LP
Sbjct: 575 TGGLEDFAVFNSV--LIRPLMSDDP-DSRLLLQALMSTICLRRRKDM---GFVNLRLPTL 628
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ ++ F E++ Y + ++ ++ + Y ++L ++LRLRQ C+H L
Sbjct: 629 TSRVLRIKFHPHEKEKYDMFQSEAKGMLLDFKSNNKTGTTYSHLLEVILRLRQVCNHWAL 688
Query: 804 VKG-FDSNSLLRSSVEMAKKLPQERQMY--LLNCLEASLAICGICNDPPEDAVVSICGHV 860
K D + + + P + +L S IC IC D E V++ C H
Sbjct: 689 AKNRLDKLAAILDKHQTVPLTPDNIKALQDMLQIRIESQEICPICLDILETPVITACAHA 748
Query: 861 FCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV 920
F + CI E++ ++CP +I S V A L + + P+ ++ L+
Sbjct: 749 FDHDCI-EQVIVRQHKCPICRAEIENKSSLVAPAADLGENTDDVSADPDNPSSKIEA-LI 806
Query: 921 EAPSCEG 927
+ + G
Sbjct: 807 KILTAHG 813
Score = 107 (42.7 bits), Expect = 1.4e-63, Sum P(5) = 1.4e-63
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 497 QAKGRPAA-GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 555
Q K + ++ TL++ P ++ W +++ + + VL+YHG R +D L +DVV
Sbjct: 434 QPKTKESSKATLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKED-ANLDHYDVV 492
Query: 556 ITTYSIVSME 565
+T+Y ++ E
Sbjct: 493 VTSYGTLATE 502
Score = 98 (39.6 bits), Expect = 1.2e-62, Sum P(5) = 1.2e-62
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 415 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQL 453
SGGILADD GLGKTI I+LIL P +T++ +K L
Sbjct: 409 SGGILADDMGLGKTIQIISLILSNSQP--KTKESSKATL 445
Score = 57 (25.1 bits), Expect = 1.4e-63, Sum P(5) = 1.4e-63
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCS 415
L+ LL +QR L+WM+ KE L S
Sbjct: 351 LSTTLLPYQRQGLAWMISKENPGLPTS 377
Score = 39 (18.8 bits), Expect = 8.8e-56, Sum P(3) = 8.8e-56
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 259 KTRSMASHLLKLSPESIQSN-SSDCKSHVDDE 289
KT+ + L +SP I SN + + H + E
Sbjct: 436 KTKESSKATLIISPVGIMSNWRNQIQEHTNPE 467
Score = 39 (18.8 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 244 KKELDGVKEDMEAEIKTRSMASHLLKL 270
+ E G+ D ++ KT + SHLL++
Sbjct: 649 QSEAKGMLLDFKSNNKTGTTYSHLLEV 675
Score = 38 (18.4 bits), Expect = 1.4e-63, Sum P(5) = 1.4e-63
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 238 QPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQS 277
Q ST N +E++ V E +K + + + SP S+ +
Sbjct: 316 QSSTFNPREINRVTESFG--LKESDLENMPMVESPSSLST 353
Score = 38 (18.4 bits), Expect = 1.4e-63, Sum P(5) = 1.4e-63
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 230 SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 288
SR+ F Y + +K G + ++ TRS + L P+ ++S S+ H+ D
Sbjct: 10 SRKRFSYLNKVSGLRKRAPGWYILIRLQL-TRSPTKLEVPLQPKIMESRSTKRSIHLVD 67
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 278 (102.9 bits), Expect = 4.2e-62, Sum P(5) = 4.2e-62
Identities = 58/154 (37%), Positives = 89/154 (57%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSL 1063
EK ++ SQWT +L+L+E ++ Y + G + V R + V FN VM++SL
Sbjct: 840 EKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEKGGAQVMLLSL 899
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
A +GLN++ H++++DL WNP E QA DR +R+GQ + V + RL VK T+E R++
Sbjct: 900 TAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRLIVKGTIEQRVMD 959
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+KK + AS E + +LT D+ LF
Sbjct: 960 LQEKKLALAASVL-EGTATRKLNKLTTADIRMLF 992
Score = 228 (85.3 bits), Expect = 4.2e-62, Sum P(5) = 4.2e-62
Identities = 54/137 (39%), Positives = 78/137 (56%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PLA+V W RV+LDEA +IKN +Q ++A L + RWCLSGTPI N + DLYS RFLR
Sbjct: 544 PLARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLR 603
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKV 744
F K + I +P+ ++ + K +MLRRTK L + I+NL K
Sbjct: 604 IPLFGDRKFWAESI-MPMKTGMAD---RVNLLTKNLMLRRTKDQQCALTNKKIVNLKEKK 659
Query: 745 IMLKQVDFTDEERDFYS 761
I + +++ +E + Y+
Sbjct: 660 IEIHELEMVGDEANGYA 676
Score = 157 (60.3 bits), Expect = 4.2e-62, Sum P(5) = 4.2e-62
Identities = 74/259 (28%), Positives = 121/259 (46%)
Query: 229 GSRQYFPYAQPSTLNKKELDGVK-EDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD 287
GS + P P EL + +++EA K + + LLK S ++ N + K VD
Sbjct: 215 GSPEASPQPSPPKNTASELQKLSIKELEAN-KDKKLK--LLKFS-SNLPDNGARVKLQVD 270
Query: 288 DEPDICILEDISQPARSN--QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG 345
+ I E+I + + ++V+ KT ++ + +A P+ ++ D G
Sbjct: 271 E-----ITEEIERRIINGVTDTMVVDKTTAIPPPPQPKNLIA---PI-PQDFAAMLDKNG 321
Query: 346 YPGVP--LTGLGGMKSKASDERLILQVAMQGISQPNAEAS---APDGVLAVPLLRHQRIA 400
+ +T +K +RL+ Q+A + P AE PDG+L V L+ HQ+
Sbjct: 322 RKVMSGRMTEQKILKVNKISDRLMQQLADATHTIP-AETDLTDTPDGLL-VELMPHQKAG 379
Query: 401 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTED-DNKRQLETLNL 458
L W+V +E H SGGILADD GLGKT+S ++LI+ ++ R E DN E +
Sbjct: 380 LRWLVWREGQP-H-SGGILADDMGLGKTLSMLSLIVHQKAARRARKESGDNAADKEKRRV 437
Query: 459 DEEDNGIQVNGLDLVKQES 477
+E+ NG ++ S
Sbjct: 438 AKEEGLYPSNGTLIIAPAS 456
Score = 146 (56.5 bits), Expect = 4.2e-62, Sum P(5) = 4.2e-62
Identities = 27/67 (40%), Positives = 47/67 (70%)
Query: 502 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTY 559
P+ GTL++ P S++ QW E+ ++ S LSV ++HG+ + + +P ELA++DVVITTY
Sbjct: 445 PSNGTLIIAPASLIHQWEAEINRRLESD-LLSVFMFHGTKKQRQIEPKELARYDVVITTY 503
Query: 560 SIVSMEV 566
++ + E+
Sbjct: 504 TLAANEL 510
Score = 65 (27.9 bits), Expect = 4.2e-62, Sum P(5) = 4.2e-62
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 782 QNYVNILLMLLRLRQACDHPLLVK-GFD 808
QN ILL+L+RLRQAC H + K G D
Sbjct: 732 QNMSCILLLLMRLRQACVHFHITKSGMD 759
Score = 39 (18.8 bits), Expect = 2.3e-39, Sum P(4) = 2.3e-39
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 616 PDGLLLDIVAGPLAKVGW 633
PDGLL++++ A + W
Sbjct: 365 PDGLLVELMPHQKAGLRW 382
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 442 (160.7 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 109/331 (32%), Positives = 170/331 (51%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL+
Sbjct: 9 PLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLK 68
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 69 LKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKVF 128
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVK 805
++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 129 IQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTN 188
Query: 806 GFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAI-----CGICNDPPEDAVVSICGHV 860
SN S+ + P+E + L+ ++ L+ C IC D V++ C HV
Sbjct: 189 AVSSNG--PSAFSLGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHV 246
Query: 861 FCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV 920
FC CIC+ + N+ P C L + + +N L P +E+ D S+ K
Sbjct: 247 FCKPCICQVI---QNEQPHAKCP--LCRNDIHE----DNLLEC--PPEELARD-SEKK-- 292
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSLAKPRGN 951
+ W +SSKI A + L L K N
Sbjct: 293 ----SDMEWTSSSKINALMHALTDLRKKNPN 319
Score = 215 (80.7 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 46/105 (43%), Positives = 67/105 (63%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF-NT-LPEVSVMIMSL 1063
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F NT ++M++SL
Sbjct: 321 KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSL 380
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1108
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V +
Sbjct: 381 KAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVII 425
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 286 (105.7 bits), Expect = 1.1e-59, Sum P(4) = 1.1e-59
Identities = 68/166 (40%), Positives = 96/166 (57%)
Query: 994 KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL 1053
K SI +K +KAIV SQWT +LD+L L + L+GT+ V R V +FN
Sbjct: 900 KTSI--LKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDR 957
Query: 1054 P-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1112
+ V+++SL A +GLN++ A H+LLLDL WNP E QA DR +R+GQ + V + +
Sbjct: 958 NNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFM 1017
Query: 1113 VKNTVEDRILALQQKKREMVASAFGEDETGGQ-QTRLTVDDLNYLF 1157
+TVE RI LQ KK ++ TG + ++LT+DDL LF
Sbjct: 1018 CVDTVEQRIKGLQDKKLDLADGVL----TGAKVSSKLTIDDLKGLF 1059
Score = 233 (87.1 bits), Expect = 1.1e-59, Sum P(4) = 1.1e-59
Identities = 52/144 (36%), Positives = 79/144 (54%)
Query: 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690
V W R++LDEA ++NH++Q + A LR K RW L+GTPIQN D+Y+ +FLR PF
Sbjct: 595 VKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPF 654
Query: 691 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
++ K I G +L ++K++MLRRTK L + +LP K + L ++
Sbjct: 655 DDLHTW----KKWIDNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEI 710
Query: 751 DFTDEERDFYSQLEINSRDQFKEY 774
EE + Y + SR F ++
Sbjct: 711 SLDKEEMNVYQTVMTYSRTLFAQF 734
Score = 158 (60.7 bits), Expect = 1.1e-59, Sum P(4) = 1.1e-59
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 497 QAKGRP---AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 553
++KGR GTLVVCP S+LRQW E+ +KV S+ L+V V+HG++R L +D
Sbjct: 515 KSKGRKDTRRGGTLVVCPASLLRQWESEVESKV-SRQKLTVCVHHGNNRETKGKYLRDYD 573
Query: 554 VVITTYSIVSME 565
+V+TTY IV+ E
Sbjct: 574 IVVTTYQIVARE 585
Score = 130 (50.8 bits), Expect = 1.1e-59, Sum P(4) = 1.1e-59
Identities = 34/94 (36%), Positives = 49/94 (52%)
Query: 344 PGYPGVP-LTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALS 402
P Y G + K+ + L V+++ + P A P G L V L+ HQ+ AL+
Sbjct: 390 PVYTGAQGMATFNNQKALTLESLKDLHVSLEDLPGPEVLAEDPVG-LKVSLMNHQKHALA 448
Query: 403 WMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436
WM +E GGILADD GLGKT++ I+ +L
Sbjct: 449 WMSWRERKLPR--GGILADDMGLGKTLTMISSVL 480
Score = 72 (30.4 bits), Expect = 5.5e-43, Sum P(4) = 5.5e-43
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 748 KQVDF---TDEERDFYSQLEINSRDQFK---EYAA-AGTVKQ-NYVNILLMLLRLRQACD 799
++ DF +D + Y+Q++ + +K ++A AG+ K+ +IL++LLRLRQ C
Sbjct: 741 RETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQICC 800
Query: 800 HPLLV 804
HP L+
Sbjct: 801 HPGLI 805
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 322 (118.4 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 66/189 (34%), Positives = 109/189 (57%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
++ L V ++R+++DE +I+N T ++A L+ K +W L+GTPI N +DDLYS +
Sbjct: 666 ISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVK 725
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLP 741
FL DP+ + + + P SKN + + + A+L+ ++LRRTK DG+P++ LP
Sbjct: 726 FLELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELP 785
Query: 742 PKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
PK +++K++ F+ + Y L + K A G + + Y IL+ +LRLRQ C HP
Sbjct: 786 PKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHP 845
Query: 802 LLVKGFDSN 810
L+ D N
Sbjct: 846 GLIGSQDEN 854
Score = 290 (107.1 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 60/161 (37%), Positives = 99/161 (61%)
Query: 1004 GEKAIVFSQWTKMLDLLEASL-----KDSSIQYRRLDGTMSVFARDKAVKDF--NTLPEV 1056
GE+ ++FSQ++ LD+LE L KD + Y+ DG +S+ R + DF
Sbjct: 1012 GEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYK-FDGRLSLKERTSVLADFAVKDYSRQ 1070
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
++++SLKA +GLN+ A H ++D WW+P+ EDQAIDR HRIGQT V V+R ++++
Sbjct: 1071 KILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDS 1130
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+E+++L +Q+KKR + A DE ++ R ++++ LF
Sbjct: 1131 IEEKMLRIQEKKRT-IGEAMDTDEDERRKRR--IEEIQMLF 1168
Score = 83 (34.3 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 28/82 (34%), Positives = 38/82 (46%)
Query: 497 QAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD- 553
Q +P A TL+V P S+L QW+ E K + + VY+G + + L K
Sbjct: 577 QDNKKPYASKTTLIVVPMSLLTQWSNEF-TKANNSPDMYHEVYYGGNVSSLKTLLTKTKT 635
Query: 554 ---VVITTYSIVSMEVPKQPLG 572
VV+TTY IV E K G
Sbjct: 636 PPTVVLTTYGIVQNEWTKHSKG 657
Score = 79 (32.9 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 842 CGICNDPPED---AVVSICGHVFCNQCICERLTADDNQ-----CPTRNCKIRLSLSSVFS 893
C IC P D A+ + CGH FC +C+ E + +++ CP NC+ ++ + +
Sbjct: 914 CSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCP--NCRNQIDACRLLA 971
Query: 894 KATLNNS 900
N++
Sbjct: 972 LVQTNSN 978
Score = 72 (30.4 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 371 AMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTIS 430
A Q + Q + DG+ L +L+ + K GGIL+D+ GLGKT++
Sbjct: 488 AAQNLQQDHVNVE--DGIFFYANLHSGEFSLAKPILKTM----IKGGILSDEMGLGKTVA 541
Query: 431 TIALIL 436
+L+L
Sbjct: 542 AYSLVL 547
Score = 45 (20.9 bits), Expect = 9.3e-56, Sum P(6) = 9.3e-56
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 376 SQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 408
S P E S V + L +Q+ L+WM+++E
Sbjct: 422 SLPETEPSRD--VFKLELRNYQKQGLTWMLRRE 452
Score = 37 (18.1 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 92 SLSNITLGDGKRSAQP 107
S+S+ T G+G RS P
Sbjct: 50 SVSDTTEGEGDRSIVP 65
Score = 37 (18.1 bits), Expect = 1.6e-58, Sum P(6) = 1.6e-58
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 284 SHVDDEPDICILEDISQPARSNQSLV 309
SH DD+ D+ + + ++S+V
Sbjct: 39 SHNDDDDDVVVSVSDTTEGEGDRSIV 64
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 280 (103.6 bits), Expect = 3.0e-57, Sum P(7) = 3.0e-57
Identities = 58/162 (35%), Positives = 93/162 (57%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE- 1055
+++I EK ++ SQWT +L+L+E +K S +Y + G + V R + V FN
Sbjct: 926 VENIMEKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFNREKGG 985
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
VM++SL A +GLN+ H++++DL WNP E QA DR +R+GQ + V + RL K
Sbjct: 986 ARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRLVTKG 1045
Query: 1116 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
T+E R++ LQ+ K + +S + T + +LT D+ LF
Sbjct: 1046 TIEQRVVMLQKDKVALASSVLDGNATR-KMNKLTTADIKMLF 1086
Score = 225 (84.3 bits), Expect = 3.0e-57, Sum P(7) = 3.0e-57
Identities = 51/135 (37%), Positives = 80/135 (59%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
LA++ W RV+LDEA +IKN ++ ++A L A RWCLSGTPI N + DLYS RFLR
Sbjct: 645 LAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRFLRI 704
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVI 745
PF+ K + I +P+ P+ ++ + K ++LRRTK + + ++ LPPK +
Sbjct: 705 RPFSDDKYWKESI-MPMK--PIMA-DRVNLLTKNLLLRRTKDQTCAVTNQKLVQLPPKNV 760
Query: 746 MLKQVDFTDEERDFY 760
+ +++ +E Y
Sbjct: 761 EVHELELDGDEAQAY 775
Score = 137 (53.3 bits), Expect = 3.0e-57, Sum P(7) = 3.0e-57
Identities = 57/199 (28%), Positives = 86/199 (43%)
Query: 287 DDEPD-ICILEDISQPARSNQS--LVLGKTLSMNRSACSNHSV-ALGKPVVTSQHSSYSD 342
DDE D I ++ED +P+ + G ++ N H V L P D
Sbjct: 361 DDEDDEIFVIED-DEPSHRQVAPKFPSGSVMTQNGLLPKRHIVDPLKAPQPDFNAMLEKD 419
Query: 343 YPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAE--ASAPDGVLAVPLLRHQRIA 400
+T + + +R++ Q+A + P+ P G + L+ HQ+
Sbjct: 420 NKKMMSGKMTDEKYKRIQLVSDRVVRQLAEATHTIPDETELTDTPKG-FKLELMPHQKAG 478
Query: 401 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS-FRTEDDNK-RQLETLNL 458
L+WM +ET GGILADD GLGKT+S I+LI ++ R ED N + E +
Sbjct: 479 LTWMRWRETQPQ--PGGILADDMGLGKTLSMISLIAHQKAARRARREDGNDDKDKEKRKV 536
Query: 459 DEEDNGIQVNGLDLVKQES 477
+E I NG +V S
Sbjct: 537 VKEQGLIPSNGTLIVAPAS 555
Score = 126 (49.4 bits), Expect = 3.0e-57, Sum P(7) = 3.0e-57
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 502 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFDVVITTY 559
P+ GTL+V P S++ QW E+ ++ LS ++HG+ + +D LA++DVVITT+
Sbjct: 544 PSNGTLIVAPASLIHQWDAEIDRRLDDS-VLSTYMFHGTKKQRDIDARRLARYDVVITTF 602
Query: 560 SIVSMEV 566
++++ E+
Sbjct: 603 NLIANEL 609
Score = 64 (27.6 bits), Expect = 3.0e-57, Sum P(7) = 3.0e-57
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 776 AAGTVKQNYVNILLMLLRLRQACDHPLLVK-GFDSNS 811
AAG+ + +L++LLRLRQAC H + K G D ++
Sbjct: 827 AAGSNFEKMSCVLMLLLRLRQACVHFNITKTGVDMDA 863
Score = 53 (23.7 bits), Expect = 1.2e-49, Sum P(7) = 1.2e-49
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 436 LKERPPSFRT--EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 485
LK P F E DNK+ + DE+ IQ+ +V+Q ++ +P+
Sbjct: 405 LKAPQPDFNAMLEKDNKKMMSGKMTDEKYKRIQLVSDRVVRQLAEATHTIPD 456
Score = 49 (22.3 bits), Expect = 1.2e-49, Sum P(7) = 1.2e-49
Identities = 29/138 (21%), Positives = 56/138 (40%)
Query: 251 KEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVL 310
++ E++ + S+ +K I + S SH + + ++SN S L
Sbjct: 35 RQSKESDDQEDSVVDESMKSVNSPIVNTPSSTASHCTNS-----FATSTPKSKSNASTRL 89
Query: 311 GKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQV 370
G + +RS+ NH + S+ Y PLT + ++++D R Q+
Sbjct: 90 GSSYGSSRSSSQNHESH-------DRSRSFVQYD--ENKPLTPISKKLAESTDLRSKAQL 140
Query: 371 A---MQGISQPNAEASAP 385
++ + NAE S+P
Sbjct: 141 RERLLRKSLKQNAEDSSP 158
Score = 40 (19.1 bits), Expect = 3.0e-57, Sum P(7) = 3.0e-57
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 930 YNSSKIKAALEVLQSLAKPRGNTV 953
Y S KIK LE+++++ + + V
Sbjct: 914 YLSCKIKNTLEIVENIMEKKEKVV 937
Score = 40 (19.1 bits), Expect = 3.0e-57, Sum P(7) = 3.0e-57
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 92 SLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVE 144
S SN + G + S +H S + F + + N L P +++S +
Sbjct: 81 SKSNASTRLGSSYGSSRSSSQNHESHDRSRSFVQYDENKPLTPISKKLAESTD 133
Score = 39 (18.8 bits), Expect = 3.8e-57, Sum P(7) = 3.8e-57
Identities = 34/154 (22%), Positives = 59/154 (38%)
Query: 132 LFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDS--GQSFIGLSPSLLS--QNQVVH 187
+F S S S E ID+ + R+S S +DS +S ++ +++ + H
Sbjct: 10 MFDTSSDDSQSDEKIDDFICRSSPQRQSKESDDQEDSVVDESMKSVNSPIVNTPSSTASH 69
Query: 188 AKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKEL 247
+SK + SSRS H S + SR + Y + K L
Sbjct: 70 CTNSFATSTPKSKSNASTRLGSSYGSSRSSSQN-HESHDR--SRSFVQYDE-----NKPL 121
Query: 248 DGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSD 281
+ + + RS A +L +S++ N+ D
Sbjct: 122 TPISKKLAESTDLRSKAQLRERLLRKSLKQNAED 155
Score = 38 (18.4 bits), Expect = 4.8e-57, Sum P(7) = 4.8e-57
Identities = 16/69 (23%), Positives = 26/69 (37%)
Query: 152 RNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDG 211
+N HD SF D + +S L + + E L+ +S + Q D
Sbjct: 101 QNHESHDRSRSFVQYDENKPLTPISKKLAESTDLRSKAQLRERLLRKSLK----QNAEDS 156
Query: 212 SSSRSPIDG 220
S +R+ G
Sbjct: 157 SPTRAASGG 165
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 332 (121.9 bits), Expect = 3.4e-56, Sum P(5) = 3.4e-56
Identities = 77/247 (31%), Positives = 131/247 (53%)
Query: 626 GPLAKVG-----WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 680
G L KVG +FR++LDE +I+N T+ A++ + L++ R+W L+GTPI N +DDLYS
Sbjct: 576 GELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDLYS 635
Query: 681 YFRFLRYDPFAVYKSFCSMIKVPISKNPV-KGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
+FL DP+ + + + + +P + + + ++++L+ I LRRTK +G+P++
Sbjct: 636 LTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVE 695
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
LP K ++++Q+ F D+E Y + + F E +G + + Y IL +LRLRQ C
Sbjct: 696 LPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCC 755
Query: 800 HPLLVKG---FDSNSL-LRSSVEMAKKLP--QERQMYLLNCLEASLAICGICNDPPEDAV 853
H L+ G D + +M K L +E Q+ N + + + E+
Sbjct: 756 HVDLIGGAHEMDDEIIEAEQDEDMRKFLTSIKENQIRFANDTDVKEKMYNLYGKIKEENE 815
Query: 854 VSICGHV 860
SIC V
Sbjct: 816 CSICTQV 822
Score = 282 (104.3 bits), Expect = 3.4e-56, Sum P(5) = 3.4e-56
Identities = 55/157 (35%), Positives = 103/157 (65%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYR--RLDGTMSVFARDKAVKDFNTLPE---VSVMI 1060
K IVFSQ++ LD++++ LK +S ++ + DG +++ R K ++ FN E V++++
Sbjct: 929 KVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMNDRTKLLESFNQPLEDGKVAILL 988
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+SLKA +GLN+ A ++D WW+P+ EDQAIDR HRIGQ V V+R ++N++E +
Sbjct: 989 LSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVKVVRFIMENSIETK 1048
Query: 1121 ILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+L +Q++K+++ + E+E ++ + ++++ LF
Sbjct: 1049 MLKIQERKKQIGEAVAAEEE---ERRKRRIEEIQILF 1082
Score = 96 (38.9 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 41/153 (26%), Positives = 64/153 (41%)
Query: 811 SLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCIC 867
S+ + + A + +MY L C IC P + VV+ C H FC CI
Sbjct: 785 SIKENQIRFANDTDVKEKMYNLYGKIKEENECSICTQVPIPYSEMVVTPCAHTFCLSCIL 844
Query: 868 ERLTAD-----DNQCPTRNCKIRLSLSSVF---SKATLNNSLSQRQPGQEIPTDYSDSKL 919
E L + CP NC+ +S +F ++ T N + R Q+ DYS
Sbjct: 845 EHLDFQKELKKEKLCP--NCRSPISKYQLFRIRNQPTKGNEI--RFHTQKDAPDYSFQLY 900
Query: 920 VEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNT 952
+ P+ +SSKI+A + L++L N+
Sbjct: 901 LYDPN-----RSSSKIQALVRHLKALHSQSPNS 928
Score = 82 (33.9 bits), Expect = 3.4e-56, Sum P(5) = 3.4e-56
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 410 SSLHCSGGILADDQGLGKTISTIALI 435
SSL GGILAD+ GLGKTI+T+AL+
Sbjct: 454 SSLR--GGILADEMGLGKTIATLALV 477
Score = 70 (29.7 bits), Expect = 3.4e-56, Sum P(5) = 3.4e-56
Identities = 27/81 (33%), Positives = 32/81 (39%)
Query: 493 NFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 550
NF E RP A TL+V P S+L QW E + + L Y T L
Sbjct: 484 NFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLC 543
Query: 551 KFD------VVITTYSIVSME 565
D V+ITTY V E
Sbjct: 544 NPDNSKIPIVMITTYGTVLNE 564
Score = 49 (22.3 bits), Expect = 3.4e-56, Sum P(5) = 3.4e-56
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 333 VTSQHSSYSDYPGYPGVPLTGLGGMKS-KASDERLILQVAMQGISQPNAEASAPDGVLAV 391
++SQ + D +P VP L MK S+ +L + ++G+ + + P A+
Sbjct: 311 ISSQEINSGDVE-HP-VPEINLDQMKEFYQSNNQLKI---LEGLPETT---TPPKENFAL 362
Query: 392 PLLRHQRIALSWMVQKE 408
L +Q+ LSWM+ +E
Sbjct: 363 DLRSYQKHGLSWMLARE 379
Score = 48 (22.0 bits), Expect = 6.7e-25, Sum P(3) = 6.7e-25
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 747 LKQVDFTDEERDFYSQLEINSRD 769
LK D T++E D SQ EINS D
Sbjct: 299 LKVNDDTEDEEDISSQ-EINSGD 320
Score = 46 (21.3 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 244 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD-DEPDICILEDISQPA 302
+KEL KE + ++ L ++ + + N + + H D PD + P
Sbjct: 850 QKELK--KEKLCPNCRSPISKYQLFRIRNQPTKGN--EIRFHTQKDAPDYSFQLYLYDPN 905
Query: 303 RSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSD 342
RS+ + + L + A + S K +V SQ SSY D
Sbjct: 906 RSSSKI---QALVRHLKALHSQSPN-SKVIVFSQFSSYLD 941
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 302 (111.4 bits), Expect = 4.4e-53, Sum P(5) = 4.4e-53
Identities = 62/152 (40%), Positives = 93/152 (61%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K+I+FSQ+T ML L+E L+ + I LDG+M+ R ++ F +V ++SLKA
Sbjct: 834 KSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTPAQRAASIDHFMNNVDVECFLVSLKA 893
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+ LN+ A V ++D WWNP E Q+ DR HRIGQTRPV + RL +++++E RI+ LQ
Sbjct: 894 GGVALNLTEASRVFIVDPWWNPAAEWQSADRVHRIGQTRPVVITRLCIEDSIESRIVELQ 953
Query: 1126 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+KK +M+ S D+ L +DL +LF
Sbjct: 954 EKKTKMINSTVNSDDVALDS--LEPEDLQFLF 983
Score = 230 (86.0 bits), Expect = 4.4e-53, Sum P(5) = 4.4e-53
Identities = 81/300 (27%), Positives = 138/300 (46%)
Query: 610 SKQKKG---PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 666
+KQ+KG DG+ + L + + RV+LDEA IK+ T ++AC L+ RWCL
Sbjct: 495 AKQEKGVSKKDGIYKE--KSLLHSIDFHRVILDEAHYIKSRTTMTSKACLALKTTYRWCL 552
Query: 667 SGTPIQNAIDDLYSYFRFLRYDPFAVY---KSFCSMIKVPIS-KNPVK--GYKKLQ--AV 718
+GTP+QN I + +S RFL+ +PFA Y CS + ++ K K G+ L+ +V
Sbjct: 553 TGTPLQNRIGEFFSLVRFLKIEPFANYLCRDCDCSALDWCLNDKYQCKKCGHGGLRHVSV 612
Query: 719 LKTIMLR--RTKGTLLDGEPI---INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 773
+L +T G L G + L IML++ +++D +E+ ++ +
Sbjct: 613 FNQELLNPIQTYGRTLKGAEAFRKLRLLTSKIMLRR-----QKKDHMDSMELPLKEIIID 667
Query: 774 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR--SSVEMAKKLPQERQMYL 831
G V+++ ++ Q + +G N+ + +++ + L
Sbjct: 668 RQFFGEVEKDLAG---SIMHNNQRKFDTYVAQGVVLNNYANIFGLLSQMRQVADHPDLIL 724
Query: 832 LNCLE--ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQ-CPTRNCKIRLSL 888
E ++ +C IC+D EDA+ S C H FC C + + CP C I LS+
Sbjct: 725 KKNNEPGVNIMVCCICDDTAEDAIKSQCKHEFCRACASSYVNSTPQPTCP--RCHIVLSI 782
Score = 104 (41.7 bits), Expect = 4.4e-53, Sum P(5) = 4.4e-53
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-RTKD--PCELAKFDVVITTYSIV 562
+LV+ P L QW E+++ ++G+L +VYHGS+ +TK EL +DV+I +Y+ +
Sbjct: 433 SLVLAPPVALMQWMSEIQSY--TEGTLKTIVYHGSNAKTKKMTKAELKGYDVIIMSYNSL 490
Query: 563 SMEVPKQPLG 572
KQ G
Sbjct: 491 QSMYAKQEKG 500
Score = 87 (35.7 bits), Expect = 4.4e-53, Sum P(5) = 4.4e-53
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERP 440
AS P + + L Q L+WM K GG+L D+ GLGKTI ++L++ + P
Sbjct: 373 ASQPTNI-SRNLKPFQLQGLAWM--KAMEQTEWKGGLLGDEMGLGKTIQAVSLVMSDWP 428
Score = 61 (26.5 bits), Expect = 4.4e-53, Sum P(5) = 4.4e-53
Identities = 57/244 (23%), Positives = 95/244 (38%)
Query: 90 GNSLS-NITL---GDGKRSAQPCTYSHSHSSRTK-QMVFAKDEGNDDLFPCWSTVSDSVE 144
G+ L NI L D K+ + YS + +S+ K V DE D P + ++ ++
Sbjct: 92 GSRLEINIPLQPPADSKKVLRKSVYSLNGASKRKWNEVDDSDEELSDSSPD-AVLARRLQ 150
Query: 145 PIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLI-------L 197
+E SS ++ SG S S L Q VVH + +D++
Sbjct: 151 KAEETDFTGSS-----SAKQAMYSGTSSTRRSTRSLKQRPVVHDLDSEDDVLTASIKSKF 205
Query: 198 ESKR----ARFCQEICDGSSSRSPIDGRHL----SLNLNGSRQYFPYAQPSTLNKKELDG 249
+SKR A+F + DGS+ S D ++ +NGS F +T +K+
Sbjct: 206 KSKRQATPAKFVADSEDGSAFSSAPDANDSDQADNIAVNGSSDEFDDEVQTTKPRKQAHR 265
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLV 309
V I R L +S +S+ D + D + + S+ R+ +
Sbjct: 266 VDRRASQPIPKRRKIVPRATLVLDSESESSAPPSEWTDSDDDEGLGDAPSETPRAVTRVR 325
Query: 310 LGKT 313
G+T
Sbjct: 326 RGRT 329
Score = 41 (19.5 bits), Expect = 1.6e-46, Sum P(4) = 1.6e-46
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 404 MVQKETSSLHCSGGILADD 422
M ++ SSL +G +LADD
Sbjct: 1 MTRRTRSSLARAGKVLADD 19
Score = 40 (19.1 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 112 HSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYH 157
H +++TK+M A+ +G D + ++++ ++ V + +
Sbjct: 463 HGSNAKTKKMTKAELKGYDVIIMSYNSLQSMYAKQEKGVSKKDGIY 508
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 351 (128.6 bits), Expect = 4.8e-53, Sum P(6) = 4.8e-53
Identities = 75/194 (38%), Positives = 116/194 (59%)
Query: 613 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 672
KK + +L ++ PL + W R+++DEA IKN + + A W LR +R WCL+GTPIQ
Sbjct: 861 KKKTNTMLYNMKEYPLYNITWRRIIIDEAHVIKNKNSIQSVAVWKLRGERNWCLTGTPIQ 920
Query: 673 NAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTKGTL 731
N+I D++ FRFL P+ + + I ++KN + ++ + I+LRRTK +
Sbjct: 921 NSIFDIFPLFRFLGIKPYGTIEWWNKEIVDYVNKNKLNLALDVVRKISSPILLRRTKKSK 980
Query: 732 L-DGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLM 790
+G II+LP K I L++++F+ EE DFY + S+ +F Y G V +Y ++L +
Sbjct: 981 TKNGNSIISLPKKNIHLEKLEFSLEEEDFYRAIFYRSKTKFDTYMHDGNVLSHYSHVLQL 1040
Query: 791 LLRLRQACDHPLLV 804
LLRLRQ C HPLL+
Sbjct: 1041 LLRLRQCCSHPLLL 1054
Score = 202 (76.2 bits), Expect = 4.8e-53, Sum P(6) = 4.8e-53
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117
V++ SLKA +GLN+ + V L+DLWWNP EDQA +R HRIGQ + V++ + ++ TV
Sbjct: 1334 VLLCSLKAGGVGLNLTVSSKVYLMDLWWNPAIEDQAFERVHRIGQLKEVNIYKFVLEKTV 1393
Query: 1118 EDRILALQQKKR 1129
E+RIL + Q K+
Sbjct: 1394 EERILQIHQSKQ 1405
Score = 120 (47.3 bits), Expect = 4.8e-53, Sum P(6) = 4.8e-53
Identities = 33/114 (28%), Positives = 60/114 (52%)
Query: 459 DEEDNGIQVNGLDLVKQESDYCRVVP---NGSSAKSFNF-VEQA-KGR--PAAGTLVVCP 511
DE G + + L+ + + ++ N + K+F + +E KG GTLV+ P
Sbjct: 685 DEMGLGKTIQSIGLITHDIYHNKLYSKNNNLENKKNFTYLIENTIKGVHFKRGGTLVIAP 744
Query: 512 TSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
+++ QW EE+ T +G ++ +Y+G+S+ EL+ + VV+TTYS + E
Sbjct: 745 LALIYQWKEEIERH-TKEGFVTCYIYYGTSKDISSEELSGYSVVLTTYSTLVSE 797
Score = 75 (31.5 bits), Expect = 1.8e-48, Sum P(6) = 1.8e-48
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 416 GGILADDQGLGKTISTIALI 435
GGILAD+ GLGKTI +I LI
Sbjct: 680 GGILADEMGLGKTIQSIGLI 699
Score = 65 (27.9 bits), Expect = 4.8e-53, Sum P(6) = 4.8e-53
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 842 CGICNDPPEDAVVSICGHVFCNQCICE--RLTA-DDNQCPTRNCKIRLSLSSV 891
C IC + ++S C H+ C +C + LT D +CP C +SL S+
Sbjct: 1166 CCICLEDATYPLISKCLHIMCKKCADDYFHLTQIADKKCP--QCDNYISLKSL 1216
Score = 60 (26.2 bits), Expect = 4.8e-53, Sum P(6) = 4.8e-53
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1008 IVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFN 1051
+VFSQW L ++E L +I + DG+++ R + FN
Sbjct: 1262 VVFSQWIGFLKIIEKLLNLYNIANKIYDGSLTFEQRKATLNWFN 1305
Score = 42 (19.8 bits), Expect = 9.4e-11, Sum P(4) = 9.4e-11
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 908 QEI-PTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGN 951
+EI P +Y +++ EGVW+ ++ E + L + + N
Sbjct: 448 EEIYPNEYYFKPMLKTYQAEGVWWMYTRENPP-EYTKKLERQKSN 491
Score = 37 (18.1 bits), Expect = 4.8e-53, Sum P(6) = 4.8e-53
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 180 LSQNQVVHAKEEHEDLILESKRAR 203
LS+N++ EE +L+ ++ R
Sbjct: 416 LSENEIEEKNEEATNLVFVEEKFR 439
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 300 (110.7 bits), Expect = 9.7e-49, Sum P(4) = 9.7e-49
Identities = 67/176 (38%), Positives = 94/176 (53%)
Query: 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690
V W RVVLDEA +IKNH ++ ++AC LR+K RW LSGTPI N I++LY Y RFLR +
Sbjct: 665 VDWHRVVLDEAHAIKNHLSRTSKACVHLRSKHRWALSGTPIHNTIEELYPYMRFLRVEWA 724
Query: 691 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK-VIMLKQ 749
A K F N + +L AV+ ++M+RR G+PI+ +PP +
Sbjct: 725 ADMKDFKKKFGGTPGDNDSEN-SRLAAVVPSLMIRRRVHDTFMGQPILRIPPTHPVKTIS 783
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
V+ + EE+ Y +LE RD + G + L RLRQ HP L++
Sbjct: 784 VELSTEEKLIYHRLEDRFRDNLNSHIKEGVSSKKLRTYFTYLTRLRQCTSHPFLLE 839
Score = 227 (85.0 bits), Expect = 9.7e-49, Sum P(4) = 9.7e-49
Identities = 81/328 (24%), Positives = 147/328 (44%)
Query: 841 ICGICNDPPEDA-VVSICGHVFCNQCICERLTAD---DNQCPTRNCKIRLSLSSVFSKAT 896
IC C + P+D+ + CGH FC CI E + + NQ P C ++ + +
Sbjct: 928 ICRSCTELPQDSQITEPCGHTFCRDCI-EPIVHNAEASNQEP--KCPHCSTVVKTYKRMP 984
Query: 897 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSL--AKPRGNTVT 954
+ ++R ++ D ++ +L + G ++ K + L +P+ + V
Sbjct: 985 KPGNRNKRYD-EDTDED-AEEELDDLGRALGNRRKKARAKKGPQPGDDLLGVQPKSSDVA 1042
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDN-ISDENEKIAAKCSI-DSI-KLGGEKAIVFS 1011
IC D T D ++ + A K + + + K +K I+F+
Sbjct: 1043 KFL-------EIC---DR-------TPDKPVTPSAKTTAIKMQVLEWLHKYPDDKIIIFT 1085
Query: 1012 QWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL--PEV-SVMIMSLKAASL 1068
W + +L + I++ G+M + R AV+ F T+ P ++I S +
Sbjct: 1086 HWVPLARILGRVFEAEKIRFLYYFGSMGMGQRKTAVEKFTTIIGPLAPKLLIASSRCGGQ 1145
Query: 1069 GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1128
LN+ AA V+L+DLWWN E QA R HRIGQT+ +++ + T+++R+L +Q +K
Sbjct: 1146 ALNLTAANRVILVDLWWNTAVERQAFGRVHRIGQTKDTYYVKIVTRKTIDERLLDMQDEK 1205
Query: 1129 REMVASAFGEDETGGQQTRLTVDDLNYL 1156
+++ + E + LT D+ YL
Sbjct: 1206 DAKISNTLQDGEH--KVKPLTHADIRYL 1231
Score = 104 (41.7 bits), Expect = 9.7e-49, Sum P(4) = 9.7e-49
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
+ PL HQ + + +M+ KE S L GGILAD GLGKT+ +A + + +
Sbjct: 519 MKTPLFNHQLVGVHFMLGKEFSPLGPYGGILADQMGLGKTVQMLACMAQNQ 569
Score = 77 (32.2 bits), Expect = 9.7e-49, Sum P(4) = 9.7e-49
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 498 AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD--PCELAKFDVV 555
A+ + TL+V P + + QW EL+ T + ++H S + ++ P L K VV
Sbjct: 566 AQNQGEGPTLIVAPAAAIEQWKSELKKHCT----FAKRIWHYSDKNENQIPEVLKKEKVV 621
Query: 556 ITTYSIVSMEVP 567
I +Y ++ P
Sbjct: 622 IASYQAIAKAFP 633
Score = 46 (21.3 bits), Expect = 9.8e-43, Sum P(4) = 9.8e-43
Identities = 24/107 (22%), Positives = 47/107 (43%)
Query: 378 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ-----GLGKTISTI 432
P+AE ++P V+ L++ + L +K+ +GG L+ ++ + IS
Sbjct: 202 PDAERASPAAVVRHNLVKMRNKYLRLTAKKDNLKAKEAGGPLSQEEIKLLEQIESEISEK 261
Query: 433 ALILKERPPSFRTEDDNKRQLETLNLDEEDNG-IQVNGLDLVKQESD 478
IL + DD+ + + D+ NG ++ DL +E+D
Sbjct: 262 EKILNDNQGDDDFSDDDDDDFDGSD-DDAPNGHVEEIENDLDGEEND 307
Score = 40 (19.1 bits), Expect = 1.9e-29, Sum P(4) = 1.9e-29
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQ--QKKREMVASAFGEDE-TGGQQTRLTVDDL 1153
A R GQ RP+ T K R+ + + + KR EDE GG Q ++ + L
Sbjct: 1282 AVRQGQKRPLGPGADTRKGIKRRRVPSKRRPESKRRATDEDDDEDEGPGGSQEQVLDESL 1341
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 286 (105.7 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 58/139 (41%), Positives = 95/139 (68%)
Query: 998 DSIKLG-GE---KAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNT 1052
+S KL GE K++VFS WT LDL+E +L+D + Y RLDGTMS+ AR+KA+ +F
Sbjct: 1004 ESAKLPEGEAPIKSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNKALDNFRD 1063
Query: 1053 LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1112
++++ ++ A +GLN+ AA HV +++ +NP QAIDR HR+GQTR V+ ++
Sbjct: 1064 DNNTTILLATIGAGGVGLNLTAASHVYIMEPQYNPAAVAQAIDRVHRLGQTREVTTVQFI 1123
Query: 1113 VKNTVEDRILALQQKKREM 1131
+K+++E++I L +KK+++
Sbjct: 1124 MKDSIEEKIAELAKKKQQL 1142
Score = 188 (71.2 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 65/242 (26%), Positives = 107/242 (44%)
Query: 625 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 684
+ PL K+ FR+VLDEA +I+ +A + L A+RRW ++GTPIQN +DDL S +F
Sbjct: 655 SSPLTKMNMFRIVLDEAHTIREQSAAQTQAIFRLNAQRRWSVTGTPIQNRLDDLLSVTKF 714
Query: 685 LRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
L P+ F I L+ ++ + LRR K I+LP +
Sbjct: 715 LGIYPYDDRSRFNMHILSRFKTGDATVLASLRVLVDSFTLRRVKDK-------IDLPARH 767
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN---YVNILLMLLRLRQACDHP 801
+ ++F++ E + S + A K Y +IL ++ LRQ H
Sbjct: 768 DKIVMLEFSESEAQLHEFFRKESNVMMRVIAGEDKSKMKGRMYHHILKAMMILRQISAHG 827
Query: 802 LLVKGFDSNSLLRS-SVEMAKKLPQ---------ERQMYLLNCL--EASLAICGICNDPP 849
+ D + ++ SV A L + +++ Y + L E+S +C IC+
Sbjct: 828 KELLDSDERARIKGLSVHDAIDLEEGPSADAVATDKKAYEMFTLMQESSADMCAICSKRL 887
Query: 850 ED 851
E+
Sbjct: 888 EE 889
Score = 182 (69.1 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 74/269 (27%), Positives = 110/269 (40%)
Query: 310 LGKTLSMNRS-ACSNHSVALGKPVVTSQHSSYSDYPGY-PGVPLTGLGGMKSKASDERLI 367
+G L N + SV G PV P Y P G+ + +
Sbjct: 385 VGNYLGQNNVWLATPFSVEQGVPVFNPHAERRRLQPSYAPTGSQRNRSGVNYEVRSAEEV 444
Query: 368 LQVAMQGISQ----PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 423
M+ Q N P V+ PLLRHQ+ AL +M +KE G D+
Sbjct: 445 TDAVMKMFDQLQSADNLPEMDPPAVVTTPLLRHQKQALWFMTEKEAPRKF--GPKEEDNN 502
Query: 424 GLGKTISTIALILKERP--PSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV----KQES 477
L + + K R + + + L L D G ++ L LV Q
Sbjct: 503 SLWREEYSANGTKKYREVISGIVLDQEPPQSLGGLLADMMGLGKTLSILSLVISSLAQAQ 562
Query: 478 DYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVY 537
++ R++P KS + K TL+V P S + W +++ + G+L+ V+
Sbjct: 563 EWARMIPQPGLVKSRPGIRNTKT-----TLLVAPLSTVNNWVSQVKEHLRD-GALTSYVF 616
Query: 538 HGSSRTKDPCELAKFDVVITTYSIVSMEV 566
HGSSRT EL+K+D+VITTYSIV E+
Sbjct: 617 HGSSRTTSVDELSKYDLVITTYSIVLSEL 645
Score = 48 (22.0 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 207 EICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASH 266
++C+G S S + ++ G + Y +K+ + E KT+++ SH
Sbjct: 943 DVCEGWISAS-----YSAITAAGLQDYLMEQAREKQTRKQAKVLGEYEGPHTKTKALLSH 997
Query: 267 LLKLSPES 274
LL + ES
Sbjct: 998 LLATAEES 1005
Score = 37 (18.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVL 719
F+ + S +I++ + + GY +L +
Sbjct: 1020 FSAWTSHLDLIEIALRDQGLTGYTRLDGTM 1049
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 249 (92.7 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 71/231 (30%), Positives = 113/231 (48%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 684 FLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
FL DP+ V + ++ P + K + L +++ IM R K ++D I +PP+
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYCR---KNSQPLYSLIAKIMWRSAKKDVIDQ---IQIPPQ 917
Query: 744 VIMLKQVDFTDEERDFYS-QLEINSRDQFKEYAAAG--TVK------QNYVNILLMLLRL 794
+ + F+ ER FY Q E+ +D + T+K + +IL LLRL
Sbjct: 918 TENIHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRL 977
Query: 795 RQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 844
RQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 978 RQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCAL 1027
Score = 226 (84.6 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 54/155 (34%), Positives = 93/155 (60%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G K++VFS W +LD++ +L D+++ + +++G +S F + + ++ P+++++++ L
Sbjct: 1527 GAKSLVFSTWQDVLDIIAKALYDNNMTFSQING-ISKFQENLSAFKYD--PKINILLLPL 1583
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GLN++ A HVLL++ NP E QAI R HRIGQT+ V R +K T+E+R+
Sbjct: 1584 HTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQT 1643
Query: 1124 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
L+ R +S+ + E + LTV DL LF
Sbjct: 1644 MLKTVDRSHTSSSMKQSEA----SVLTVADLADLF 1674
Score = 118 (46.6 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ DVVITTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 564 MEV 566
E+
Sbjct: 777 TEL 779
Score = 84 (34.6 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN 457
GGILAD+ GLGKT+ +ALIL + +D + E +N
Sbjct: 371 GGILADEMGLGKTVEVLALILTHTREDIKQDDLTLPEGELVN 412
Score = 75 (31.5 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 25/85 (29%), Positives = 35/85 (41%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 899
C IC + V CGH FCN+CI + + TR I+ ++ S ++
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNECIA--IIIEQYSVGTRRSSIKCAICRQTTSHKEISY 1488
Query: 900 SLSQRQPGQE--IPTDYSDSKLVEA 922
+ QE IP S S VEA
Sbjct: 1489 VFTAETANQEDDIPVKGSHSTKVEA 1513
Score = 57 (25.1 bits), Expect = 4.9e-45, Sum P(5) = 4.9e-45
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 243 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCK---SHVDDEPDICI-LEDI 298
N KE + E KT S +LS + Q+N S S +E D C +++
Sbjct: 515 NYKEQKRRERTKEQAAKT-SERIQKKQLSDANTQTNESKIPLRTSIATEEHDYCATIKND 573
Query: 299 SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDY 343
+ N++ + + ++ ++A S GKP+++ SS+SD+
Sbjct: 574 RKSETDNENSM--EENNIQKAAVSKSPDLHGKPLISGDISSHSDF 616
Score = 54 (24.1 bits), Expect = 9.9e-45, Sum P(5) = 9.9e-45
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 445 TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFN 493
+E K+QL N ++ I + + +E DYC + N +++ N
Sbjct: 533 SERIQKKQLSDANTQTNESKIPLR-TSIATEEHDYCATIKNDRKSETDN 580
Score = 47 (21.6 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 19/82 (23%), Positives = 31/82 (37%)
Query: 3 CYINTGDTIFGDPSSFNFQHLLSSEETATKP--KDEEGEFTTEIACSSSGLVLNAQGGPG 60
C D +F + S F H + + + +DEEG + +S GL ++
Sbjct: 1240 CVFCKADELFTEYESKLFSHTVKGQMAIFEEMIEDEEGLVDDRLPTTSRGLWATSETERA 1299
Query: 61 KGSMLKVPAIDYLDAKRQCEDS 82
++L LD K E S
Sbjct: 1300 LKAILSFAKAHRLDVKLTEEGS 1321
Score = 38 (18.4 bits), Expect = 9.1e-19, Sum P(4) = 9.1e-19
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDG 734
FA++K ++ + I +N + L+ ++ ++ + KG L G
Sbjct: 464 FAIFKYISAVYRYDIQRNRRLLKRTLEKLIAEQVVEQVKGHGLAG 508
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 249 (92.7 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 71/231 (30%), Positives = 113/231 (48%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVL 863
Query: 684 FLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
FL DP+ V + ++ P + K + L +++ IM R K ++D I +PP+
Sbjct: 864 FLGIDPYWVKHWWDQLLYRPYCR---KNSQPLYSLIAKIMWRSAKKDVIDQ---IQIPPQ 917
Query: 744 VIMLKQVDFTDEERDFYS-QLEINSRDQFKEYAAAG--TVK------QNYVNILLMLLRL 794
+ + F+ ER FY Q E+ +D + T+K + +IL LLRL
Sbjct: 918 TENIHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRL 977
Query: 795 RQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 844
RQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 978 RQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCRTECEEAHRQLVCAL 1027
Score = 226 (84.6 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 54/155 (34%), Positives = 93/155 (60%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G K++VFS W +LD++ +L D+++ + +++G +S F + + ++ P+++++++ L
Sbjct: 1527 GAKSLVFSTWQDVLDIIAKALYDNNMTFSQING-ISKFQENLSAFKYD--PKINILLLPL 1583
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GLN++ A HVLL++ NP E QAI R HRIGQT+ V R +K T+E+R+
Sbjct: 1584 HTGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQT 1643
Query: 1124 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
L+ R +S+ + E + LTV DL LF
Sbjct: 1644 MLKTVDRSHTSSSMKQSEA----SVLTVADLADLF 1674
Score = 118 (46.6 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ DVVITTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 564 MEV 566
E+
Sbjct: 777 TEL 779
Score = 84 (34.6 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN 457
GGILAD+ GLGKT+ +ALIL + +D + E +N
Sbjct: 366 GGILADEMGLGKTVEVLALILTHTREDIKQDDLTLPEGELVN 407
Score = 75 (31.5 bits), Expect = 8.3e-48, Sum P(5) = 8.3e-48
Identities = 25/85 (29%), Positives = 35/85 (41%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 899
C IC + V CGH FCN+CI + + TR I+ ++ S ++
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNECIA--IIIEQYSVGTRRSSIKCAICRQTTSHKEISY 1488
Query: 900 SLSQRQPGQE--IPTDYSDSKLVEA 922
+ QE IP S S VEA
Sbjct: 1489 VFTAETANQEDDIPVKGSHSTKVEA 1513
Score = 47 (21.6 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 19/82 (23%), Positives = 31/82 (37%)
Query: 3 CYINTGDTIFGDPSSFNFQHLLSSEETATKP--KDEEGEFTTEIACSSSGLVLNAQGGPG 60
C D +F + S F H + + + +DEEG + +S GL ++
Sbjct: 1240 CVFCKADELFTEYESKLFSHTVKGQMAIFEEMIEDEEGLVDDRLPTTSRGLWATSETERA 1299
Query: 61 KGSMLKVPAIDYLDAKRQCEDS 82
++L LD K E S
Sbjct: 1300 LKAILSFAKAHRLDVKLTEEGS 1321
Score = 43 (20.2 bits), Expect = 1.3e-43, Sum P(5) = 1.3e-43
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 445 TEDDNKRQLETLNLD-EEDNGIQVNGLDLVK---------QESDYCRVVPNGSSAKSFN 493
+E K+QL N E V D++K +E DYC + N +++ N
Sbjct: 528 SERIQKKQLSDANTQTNESKDSDVTSTDVLKIPLRTSIATEEHDYCATIKNDRKSETDN 586
Score = 38 (18.4 bits), Expect = 9.1e-19, Sum P(4) = 9.1e-19
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDG 734
FA++K ++ + I +N + L+ ++ ++ + KG L G
Sbjct: 459 FAIFKYISAVYRYDIQRNRRLLKRTLEKLIAEQVVEQVKGHGLAG 503
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 242 (90.2 bits), Expect = 3.9e-46, Sum P(7) = 3.9e-46
Identities = 70/232 (30%), Positives = 115/232 (49%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 802 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCVSGTPVQRGLEDLFGLVV 861
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
FL +P+ V + ++ P KNP + L + + IM R K ++D I +PP
Sbjct: 862 FLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAKKDVIDQ---IQIPP 914
Query: 743 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 793
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 915 QTEEMHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVSSILYPLLR 974
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 844
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 975 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1025
Score = 231 (86.4 bits), Expect = 3.9e-46, Sum P(7) = 3.9e-46
Identities = 53/158 (33%), Positives = 92/158 (58%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K G KA+VFS W +LD++ +L D+++ + ++ + F + + ++ P+++++
Sbjct: 1542 LKDPGAKALVFSTWQDVLDIISKALTDNNMGFTQIS-RIKTFQENLSAFKYD--PQINIL 1598
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
++ L S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+
Sbjct: 1599 LLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEE 1658
Query: 1120 RILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
R+ A+ + S+ G+ + + LTV DL LF
Sbjct: 1659 RMQAMLKTAERSHTSSSGKHS---EASALTVADLADLF 1693
Score = 111 (44.1 bits), Expect = 3.9e-46, Sum P(7) = 3.9e-46
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 716 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 774
Query: 564 MEV 566
E+
Sbjct: 775 SEL 777
Score = 79 (32.9 bits), Expect = 3.9e-46, Sum P(7) = 3.9e-46
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 361 GGILADEMGLGKTVEVLALIL 381
Score = 67 (28.6 bits), Expect = 3.9e-46, Sum P(7) = 3.9e-46
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQC---ICERLTADDNQCPTRNCKIRLSLSSVFSKATL 897
C IC + V CGH FCN+C I E+ + ++ + C I +S + +
Sbjct: 1450 CPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGSHRSSIK-CAICRQTTSHKEVSYV 1508
Query: 898 NNSLSQRQPGQEIPTDYSDSKLVEA 922
S Q +IP S S VEA
Sbjct: 1509 FTSEKANQE-DDIPVKGSHSTKVEA 1532
Score = 54 (24.1 bits), Expect = 3.9e-46, Sum P(7) = 3.9e-46
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 391 VPLLR-HQRIALSWMVQKE 408
+P+LR +QR A++WM+Q+E
Sbjct: 295 IPVLRPYQREAVNWMLQQE 313
Score = 41 (19.5 bits), Expect = 1.4e-41, Sum P(5) = 1.4e-41
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 430 STIALILKERPPSFRTEDDNKRQLET---LNLDEEDNGIQV 467
S+ +I+ + PP D KR E+ LN E++ + V
Sbjct: 48 SSDCIIIDDDPPEGAAHRDKKRCTESVSILNSTEKETPLSV 88
Score = 41 (19.5 bits), Expect = 1.4e-41, Sum P(5) = 1.4e-41
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 244 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 290
KK+ G + +E E++ + P I + +D DD+P
Sbjct: 516 KKQAVGSPQKIEKELRKSVNKDTDSEYMPSDIYDDDNDNDDDDDDDP 562
Score = 39 (18.8 bits), Expect = 3.9e-46, Sum P(7) = 3.9e-46
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 237 AQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEP 290
A P ++++ ++ +M +++ ++ L + ++SSDC +DD+P
Sbjct: 8 APPMKVDEERQQQLRWNMHEDLRNEPLS--LTEEERACWDADSSDCII-IDDDP 58
Score = 37 (18.1 bits), Expect = 4.5e-24, Sum P(6) = 4.5e-24
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLL 1020
IKL +KA+ SQ K L L
Sbjct: 1408 IKLVNDKAVATSQLQKKLGQL 1428
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 242 (90.2 bits), Expect = 6.5e-46, Sum P(6) = 6.5e-46
Identities = 69/232 (29%), Positives = 115/232 (49%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 806 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 865
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 866 FLGIEPYCVKHWWVRLLYRPYCKKNP----QHLYSFIAKILWRSAKKDVIDQ---IQIPP 918
Query: 743 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 793
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 919 QTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLR 978
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 844
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 979 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1029
Score = 224 (83.9 bits), Expect = 6.5e-46, Sum P(6) = 6.5e-46
Identities = 53/155 (34%), Positives = 91/155 (58%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1530 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKHDPQINILLLPL 1586
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1587 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1646
Query: 1124 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
L+ ++ +S+ E + LT+ DL LF
Sbjct: 1647 MLKTAEKSHTSSSVKHPEA----SVLTLADLADLF 1677
Score = 111 (44.1 bits), Expect = 6.5e-46, Sum P(6) = 6.5e-46
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 720 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 778
Query: 564 MEV 566
E+
Sbjct: 779 SEL 781
Score = 79 (32.9 bits), Expect = 6.5e-46, Sum P(6) = 6.5e-46
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 370 GGILADEMGLGKTVEVLALIL 390
Score = 68 (29.0 bits), Expect = 6.5e-46, Sum P(6) = 6.5e-46
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 899
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1434 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1491
Query: 900 SLSQRQPGQE--IPTDYSDSKLVEA 922
+ + QE IP S S VEA
Sbjct: 1492 VFTSEKASQEEDIPVKGSHSTKVEA 1516
Score = 54 (24.1 bits), Expect = 6.5e-46, Sum P(6) = 6.5e-46
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 391 VPLLR-HQRIALSWMVQKE 408
+P+LR +QR A++WM+Q+E
Sbjct: 303 IPVLRPYQREAVNWMLQQE 321
Score = 37 (18.1 bits), Expect = 1.3e-40, Sum P(5) = 1.3e-40
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 437 KERPPSFRTEDDNKRQLETLNLDEE 461
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKQQQLHW-NMHED 28
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 243 (90.6 bits), Expect = 9.8e-46, Sum P(6) = 9.8e-46
Identities = 70/232 (30%), Positives = 115/232 (49%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 795 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 854
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
FL +P+ V + ++ P KNP + L + + IM R K ++D I +PP
Sbjct: 855 FLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAKKDVIDQ---IQIPP 907
Query: 743 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 793
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 908 QTEEMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLR 967
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 844
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 968 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1018
Score = 223 (83.6 bits), Expect = 9.8e-46, Sum P(6) = 9.8e-46
Identities = 51/154 (33%), Positives = 89/154 (57%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G KA+VFS W +LD++ +L D+++++ ++ + F + + ++ P ++++++ L
Sbjct: 1519 GAKALVFSTWQDVLDIISKALTDNNMEFTQIS-RIKTFQENLSAFKYD--PHINILLLPL 1575
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1576 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1635
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+ + S+ G+ + + LTV L LF
Sbjct: 1636 MLKTAERSHTSSSGKHS---EASVLTVAGLADLF 1666
Score = 110 (43.8 bits), Expect = 9.8e-46, Sum P(6) = 9.8e-46
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 709 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVLR 767
Query: 564 MEV 566
E+
Sbjct: 768 SEL 770
Score = 79 (32.9 bits), Expect = 9.8e-46, Sum P(6) = 9.8e-46
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 363 GGILADEMGLGKTVEVLALIL 383
Score = 67 (28.6 bits), Expect = 9.8e-46, Sum P(6) = 9.8e-46
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQC---ICERLTADDNQCPTRNCKIRLSLSSVFSKATL 897
C IC + V CGH FCN+C I E+ + ++ + C I +S + +
Sbjct: 1423 CPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGSHRSSIK-CAICRQTTSHKEVSYV 1481
Query: 898 NNSLSQRQPGQEIPTDYSDSKLVEA 922
S Q +IP S S VEA
Sbjct: 1482 FTSEKANQE-DDIPVKGSHSTKVEA 1505
Score = 54 (24.1 bits), Expect = 9.8e-46, Sum P(6) = 9.8e-46
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 391 VPLLR-HQRIALSWMVQKE 408
+P+LR +QR A++WM+Q+E
Sbjct: 296 IPVLRPYQREAVNWMLQQE 314
Score = 50 (22.7 bits), Expect = 9.7e-42, Sum P(5) = 9.7e-42
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 430 STIALILKERPPSFRTEDDNKRQLETLNL---DEEDNGIQV 467
S+ +I+ E PP D KR+ ET+++ EE+ + V
Sbjct: 49 SSDCIIIDEGPPESALHRDKKRRSETVSVLEATEEETRLSV 89
Score = 37 (18.1 bits), Expect = 1.8e-24, Sum P(5) = 1.8e-24
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLL 1020
IKL +KA+ SQ K L L
Sbjct: 1381 IKLVNDKAVATSQLQKKLGQL 1401
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 238 (88.8 bits), Expect = 1.0e-45, Sum P(7) = 1.0e-45
Identities = 70/232 (30%), Positives = 113/232 (48%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
FL +P+ V + ++ P KNP L + + IM R K ++D I +PP
Sbjct: 869 FLGVEPYCVRHWWVRLLYRPYCKKNP----HFLYSFIAKIMWRSAKKDVIDQ---IQIPP 921
Query: 743 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 793
+ + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 922 QTEETHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLR 981
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 844
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 982 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1032
Score = 223 (83.6 bits), Expect = 1.0e-45, Sum P(7) = 1.0e-45
Identities = 53/154 (34%), Positives = 89/154 (57%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G KA+VFS W +LD++ +L D+++++ ++ + F + + ++ P+++++++ L
Sbjct: 1533 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSAFKYD--PQINILLLPL 1589
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1590 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1649
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+ K E S + + LTV DL LF
Sbjct: 1650 ML-KTAER--SHTNPSAKHSEASVLTVADLADLF 1680
Score = 111 (44.1 bits), Expect = 1.0e-45, Sum P(7) = 1.0e-45
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 564 MEV 566
E+
Sbjct: 782 SEL 784
Score = 79 (32.9 bits), Expect = 1.0e-45, Sum P(7) = 1.0e-45
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 373 GGILADEMGLGKTVEVLALIL 393
Score = 71 (30.1 bits), Expect = 1.0e-45, Sum P(7) = 1.0e-45
Identities = 24/85 (28%), Positives = 35/85 (41%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 899
C IC + V CGH FCN+CI + + + IR ++ S ++
Sbjct: 1437 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIRCAICRQTTSHKEISY 1494
Query: 900 SLSQRQPGQE--IPTDYSDSKLVEA 922
+ + QE IP S S VEA
Sbjct: 1495 VFTSEKASQEEDIPVKGSHSTKVEA 1519
Score = 58 (25.5 bits), Expect = 3.8e-29, Sum P(7) = 3.8e-29
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 935 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLD 982
IKA +E +Q++ K + TN S +HS S+ D DL DT D
Sbjct: 1639 IKATIEERMQAMLKTAERSHTNPSAKHS-EASVLTVADLADLFTKDTED 1686
Score = 51 (23.0 bits), Expect = 1.0e-45, Sum P(7) = 1.0e-45
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 392 PLLR-HQRIALSWMVQKE 408
P+LR +QR A++WM+Q+E
Sbjct: 307 PVLRPYQREAVNWMLQQE 324
Score = 46 (21.3 bits), Expect = 1.0e-45, Sum P(7) = 1.0e-45
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 219 DGRHLSLNLNGSRQYFPYAQPSTLNKKELD-GVKEDMEAEIKTR 261
D R+ L L Q +P PS ++ LD +KE++ K R
Sbjct: 28 DRRNEPLTLTDDEQSYPGLDPSPAHRIILDDSLKEEVAHREKKR 71
Score = 38 (18.4 bits), Expect = 1.8e-40, Sum P(5) = 1.8e-40
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 437 KERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 485
++R P R +++ ++QL N+ E+ L L E Y + P+
Sbjct: 5 RKRAPPVRVDEETQQQL-CWNMHEDRRN---EPLTLTDDEQSYPGLDPS 49
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 296 (109.3 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 66/153 (43%), Positives = 94/153 (61%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G K ++FSQ+T ML L+E L D+ I Y +L G S R + V F EV V ++SL
Sbjct: 981 GRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKFQR-GEVPVFLISL 1037
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
+A +GLN+ AA V+ D WWNP E+QA DRA+RIGQ +PV V +L ++N++E++I
Sbjct: 1038 RAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQK 1097
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
+QQ K E+ A A +E + LT D L+ L
Sbjct: 1098 IQQNKAEL-AKALLSEEVSDNKLSLTDDILDSL 1129
Score = 230 (86.0 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 60/205 (29%), Positives = 109/205 (53%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
++ +VLDEA IKN +T++ +A L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 693 YKSFCSMIKVPISKNPVKGYKKL-QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVD 751
+ F + + PI K+ K+L +K +LRRTK + LPPK +++ +
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLR 900
Query: 752 FTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 811
++ + Y + + + K+ A +K++ + +L LL+LRQ C+HP L+K
Sbjct: 901 IEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLLK------ 954
Query: 812 LLRSSVEMAKKLPQERQM-YLLNCL 835
+E AKK+ Q ++ YL+ L
Sbjct: 955 -----LEGAKKVNQSAKLDYLMETL 974
Score = 98 (39.6 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 341 SDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA 400
S + G+ + + GM +K + + L ++ Q P+G+ A L +Q
Sbjct: 612 SRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQQVTT-IPVPEGLNAT-LRTYQHQG 669
Query: 401 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
L+W+ L+ GILADD GLGKTI T+A +L E+
Sbjct: 670 LNWLQFLREYQLN---GILADDMGLGKTIQTLAHLLIEK 705
Score = 95 (38.5 bits), Expect = 4.0e-45, Sum P(3) = 4.0e-45
Identities = 52/201 (25%), Positives = 93/201 (46%)
Query: 378 PNAEASAPDGVLAVPLLR-HQRIAL---SWMVQKETSSLHCSGGILADDQGLGKTISTIA 433
PNA + DG + + + HQ +++ M+ K TS L L D Q ++TI
Sbjct: 600 PNALSH--DGTIELSRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQ----QVTTIP 653
Query: 434 LILKERPPSFRT-EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 492
+ + + RT + L+ L + + NGI + + L K ++
Sbjct: 654 -VPEGLNATLRTYQHQGLNWLQFLR-EYQLNGILADDMGLGKTIQTLAHLL--------- 702
Query: 493 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC---- 547
+E+ +GR L+V PTSV+ WA E+ +K T + LS V HG+ R + C
Sbjct: 703 --IEKQQGRLTKPILIVAPTSVIFNWANEI-DKFTPQ--LSYQVLHGNKRHEQFGCLEGV 757
Query: 548 ELAK--FDVVITTYSIVSMEV 566
E + D++IT+Y++++ ++
Sbjct: 758 ENGENQVDIIITSYALITKDL 778
Score = 43 (20.2 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 743 KVIMLKQVDFTDEERDFYSQLEINSRDQFK 772
++I + + F DEE++ + ++ N++ F+
Sbjct: 262 RIIKAQPLCFYDEEKNCFGKINTNTQCDFE 291
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 296 (109.3 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 66/153 (43%), Positives = 94/153 (61%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G K ++FSQ+T ML L+E L D+ I Y +L G S R + V F EV V ++SL
Sbjct: 981 GRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKFQR-GEVPVFLISL 1037
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
+A +GLN+ AA V+ D WWNP E+QA DRA+RIGQ +PV V +L ++N++E++I
Sbjct: 1038 RAGGVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQK 1097
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
+QQ K E+ A A +E + LT D L+ L
Sbjct: 1098 IQQNKAEL-AKALLSEEVSDNKLSLTDDILDSL 1129
Score = 230 (86.0 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 60/205 (29%), Positives = 109/205 (53%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
++ +VLDEA IKN +T++ +A L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 693 YKSFCSMIKVPISKNPVKGYKKL-QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVD 751
+ F + + PI K+ K+L +K +LRRTK + LPPK +++ +
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLR 900
Query: 752 FTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 811
++ + Y + + + K+ A +K++ + +L LL+LRQ C+HP L+K
Sbjct: 901 IEGKQAELYESVRLAMDSRLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLLK------ 954
Query: 812 LLRSSVEMAKKLPQERQM-YLLNCL 835
+E AKK+ Q ++ YL+ L
Sbjct: 955 -----LEGAKKVNQSAKLDYLMETL 974
Score = 98 (39.6 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 341 SDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA 400
S + G+ + + GM +K + + L ++ Q P+G+ A L +Q
Sbjct: 612 SRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQQVTT-IPVPEGLNAT-LRTYQHQG 669
Query: 401 LSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
L+W+ L+ GILADD GLGKTI T+A +L E+
Sbjct: 670 LNWLQFLREYQLN---GILADDMGLGKTIQTLAHLLIEK 705
Score = 95 (38.5 bits), Expect = 4.0e-45, Sum P(3) = 4.0e-45
Identities = 52/201 (25%), Positives = 93/201 (46%)
Query: 378 PNAEASAPDGVLAVPLLR-HQRIAL---SWMVQKETSSLHCSGGILADDQGLGKTISTIA 433
PNA + DG + + + HQ +++ M+ K TS L L D Q ++TI
Sbjct: 600 PNALSH--DGTIELSRFQGHQTLSMLDDQGMIAKGTSKLRALADKLKDFQ----QVTTIP 653
Query: 434 LILKERPPSFRT-EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 492
+ + + RT + L+ L + + NGI + + L K ++
Sbjct: 654 -VPEGLNATLRTYQHQGLNWLQFLR-EYQLNGILADDMGLGKTIQTLAHLL--------- 702
Query: 493 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PC---- 547
+E+ +GR L+V PTSV+ WA E+ +K T + LS V HG+ R + C
Sbjct: 703 --IEKQQGRLTKPILIVAPTSVIFNWANEI-DKFTPQ--LSYQVLHGNKRHEQFGCLEGV 757
Query: 548 ELAK--FDVVITTYSIVSMEV 566
E + D++IT+Y++++ ++
Sbjct: 758 ENGENQVDIIITSYALITKDL 778
Score = 43 (20.2 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 743 KVIMLKQVDFTDEERDFYSQLEINSRDQFK 772
++I + + F DEE++ + ++ N++ F+
Sbjct: 262 RIIKAQPLCFYDEEKNCFGKINTNTQCDFE 291
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 248 (92.4 bits), Expect = 1.6e-44, Sum P(5) = 1.6e-44
Identities = 109/419 (26%), Positives = 176/419 (42%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNP----QHLYSFIAKILWRSAKKDVIDQ---IQIPP 916
Query: 743 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 793
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 917 QTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLR 976
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGI-CNDPPEDA 852
LRQAC HP V+G + L +S + LL L+ CG C +
Sbjct: 977 LRQACCHPQAVRG-EFLPLQKSFEQSTFSFSTMTMEELLTSLQKK---CGTECEEAHRQL 1032
Query: 853 VVSICG----HVFCNQ-CICERLTADD-NQCPTRNCKIRL-SLSSVFSKATLNNSLSQRQ 905
V ++ G H+ + + L + K++ SL + + L L R
Sbjct: 1033 VCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARH 1092
Query: 906 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 965
PG IP D +L E Y S E Q+L P T+ H L+ + +
Sbjct: 1093 PG--IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALY-PVQQTI--HELQRKIHSN 1147
Query: 966 ICCPGDSNDLHGGD--TLDN--ISDENEKIAAKCSIDSIKLG-GEKAIVFSQWTKMLDL 1019
P N +H T+D + +I + + KL EK + F T+M +L
Sbjct: 1148 --SPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQMEEL 1204
Score = 228 (85.3 bits), Expect = 1.6e-44, Sum P(5) = 1.6e-44
Identities = 55/155 (35%), Positives = 90/155 (58%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1532 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKRDPQINILLLPL 1588
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1589 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1648
Query: 1124 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
L+ +R S+ E + LTV DL LF
Sbjct: 1649 MLKTAERSHTNSSAKHSEA----SVLTVADLADLF 1679
Score = 111 (44.1 bits), Expect = 1.6e-44, Sum P(5) = 1.6e-44
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 564 MEV 566
E+
Sbjct: 777 SEL 779
Score = 79 (32.9 bits), Expect = 1.6e-44, Sum P(5) = 1.6e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 368 GGILADEMGLGKTVEVLALIL 388
Score = 68 (29.0 bits), Expect = 4.4e-26, Sum P(5) = 4.4e-26
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 899
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1436 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
Query: 900 SLSQRQPGQE--IPTDYSDSKLVEA 922
+ + QE IP S S VEA
Sbjct: 1494 VFTSEKANQEEDIPVKGSHSTKVEA 1518
Score = 54 (24.1 bits), Expect = 1.6e-44, Sum P(5) = 1.6e-44
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 391 VPLLR-HQRIALSWMVQKE 408
+P+LR +QR A++WM+Q+E
Sbjct: 301 IPVLRPYQREAVNWMLQQE 319
Score = 52 (23.4 bits), Expect = 4.1e-08, Sum P(5) = 4.1e-08
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 935 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDT 980
IKA +E +Q++ K + TN S +HS S+ D DL +T
Sbjct: 1638 IKATIEERMQAMLKTAERSHTNSSAKHS-EASVLTVADLADLFTKET 1683
Score = 42 (19.8 bits), Expect = 6.1e-40, Sum P(4) = 6.1e-40
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKER 439
+KE S+ C GIL + G+ + + + K+R
Sbjct: 164 KKEPMSI-CDKGILVESSFSGEMLEDLGWLQKKR 196
Score = 38 (18.4 bits), Expect = 1.6e-39, Sum P(4) = 1.6e-39
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 437 KERPPSFRTEDDNKRQLETLNLDEE 461
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKRQQLHW-NMHED 28
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 245 (91.3 bits), Expect = 3.4e-44, Sum P(5) = 3.4e-44
Identities = 95/356 (26%), Positives = 157/356 (44%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 804 IPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 863
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 864 FLGIEPYCVKHWWVRLLYRPYCKKNP----QHLYSFIAKILWRSAKKDVIDQ---IQIPP 916
Query: 743 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 793
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 917 QTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLR 976
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAV 853
LRQAC HP V+G + L +S++ M + L ++ C EA + +C A+
Sbjct: 977 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQL--VC------AL 1027
Query: 854 VSICG-HVFCNQ-CICERLTADD-NQCPTRNCKIRL-SLSSVFSKATLNNSLSQRQPGQE 909
+ G H+ + + L + K++ SL + + L L R PG
Sbjct: 1028 NGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPG-- 1085
Query: 910 IPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 965
IP D +L E Y S E Q+L P T+ H L+ + +
Sbjct: 1086 IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALY-PVQQTI--HELQRKIHSN 1138
Score = 228 (85.3 bits), Expect = 3.4e-44, Sum P(5) = 3.4e-44
Identities = 55/155 (35%), Positives = 90/155 (58%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1528 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKRDPQINILLLPL 1584
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1585 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1644
Query: 1124 -LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
L+ +R S+ E + LTV DL LF
Sbjct: 1645 MLKTAERSHTNSSAKHSEA----SVLTVADLADLF 1675
Score = 111 (44.1 bits), Expect = 3.4e-44, Sum P(5) = 3.4e-44
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 564 MEV 566
E+
Sbjct: 777 SEL 779
Score = 79 (32.9 bits), Expect = 3.4e-44, Sum P(5) = 3.4e-44
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 416 GGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 368 GGILADEMGLGKTVEVLALIL 388
Score = 68 (29.0 bits), Expect = 4.3e-26, Sum P(5) = 4.3e-26
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 899
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1432 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1489
Query: 900 SLSQRQPGQE--IPTDYSDSKLVEA 922
+ + QE IP S S VEA
Sbjct: 1490 VFTSEKANQEEDIPVKGSHSTKVEA 1514
Score = 54 (24.1 bits), Expect = 3.4e-44, Sum P(5) = 3.4e-44
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 391 VPLLR-HQRIALSWMVQKE 408
+P+LR +QR A++WM+Q+E
Sbjct: 301 IPVLRPYQREAVNWMLQQE 319
Score = 52 (23.4 bits), Expect = 2.7e-26, Sum P(5) = 2.7e-26
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 935 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDT 980
IKA +E +Q++ K + TN S +HS S+ D DL +T
Sbjct: 1634 IKATIEERMQAMLKTAERSHTNSSAKHS-EASVLTVADLADLFTKET 1679
Score = 42 (19.8 bits), Expect = 1.3e-39, Sum P(4) = 1.3e-39
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKER 439
+KE S+ C GIL + G+ + + + K+R
Sbjct: 164 KKEPMSI-CDKGILVESSFSGEMLEDLGWLQKKR 196
Score = 38 (18.4 bits), Expect = 3.3e-39, Sum P(4) = 3.3e-39
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 437 KERPPSFRTEDDNKRQLETLNLDEE 461
++R P R +++ ++QL N+ E+
Sbjct: 5 RKRAPPVRVDEEKRQQLHW-NMHED 28
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 267 (99.0 bits), Expect = 2.0e-42, Sum P(4) = 2.0e-42
Identities = 56/157 (35%), Positives = 93/157 (59%)
Query: 619 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDL 678
L ++ ++ PL +V W R++LDEA ++KN R Q + A L+A+ RW ++GTPIQN + D+
Sbjct: 697 LSVEGISAPLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDM 756
Query: 679 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPI 737
YS +FLR PF + S+ K + +KG ++L + K+++LRRTK L G+P+
Sbjct: 757 YSLMKFLRCSPFDEF----SLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPL 812
Query: 738 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 774
+ LP + L ++ +++ER Y SR + Y
Sbjct: 813 VPLPARSCQLHRLKLSEDERAVYDVFLARSRSALQSY 849
Score = 157 (60.3 bits), Expect = 2.0e-42, Sum P(4) = 2.0e-42
Identities = 43/107 (40%), Positives = 61/107 (57%)
Query: 359 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 418
S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E+ GGI
Sbjct: 520 SEAIDE---LHRSLESCPGKTAVAEDPAG-LKVPLLLHQKQALAWLLWRESQKPQ--GGI 573
Query: 419 LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
LADD GLGKT++ IALIL ++ E D R L + L + D+ +
Sbjct: 574 LADDMGLGKTLTMIALILTKKNQQKSKEKD--RSLPVMWLSKNDSSV 618
Score = 152 (58.6 bits), Expect = 2.0e-42, Sum P(4) = 2.0e-42
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 503 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 562
+ GTL+VCP S++ W E+ +V S L + +YHG +R + L+ +D+VITTYS++
Sbjct: 621 STGTLIVCPASLIHHWKNEIEKRVNSN-KLRIYLYHGPNRIQHAKVLSTYDIVITTYSLL 679
Query: 563 SMEVP 567
+ E+P
Sbjct: 680 AKEIP 684
Score = 63 (27.2 bits), Expect = 2.0e-42, Sum P(4) = 2.0e-42
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 776 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSV 817
AA + + + V++L LLRLRQ C H L+K + S + ++V
Sbjct: 885 AADSRRPSTVHVLSQLLRLRQCCCHLSLLKSVRAPSGVTATV 926
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 242 (90.2 bits), Expect = 6.4e-42, Sum P(5) = 6.4e-42
Identities = 69/232 (29%), Positives = 115/232 (49%)
Query: 624 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 809 IPSPLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVV 868
Query: 684 FLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
FL +P+ V + ++ P KNP + L + + I+ R K ++D I +PP
Sbjct: 869 FLGIEPYCVKHWWVRLLYRPYCKKNP----QPLYSFIAKILWRSAKKDVIDQ---IQIPP 921
Query: 743 KVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYAA--AGTVKQNYVNILLMLLR 793
+ + + F+ ER FY Q E+ +D + ++A + ++ +IL LLR
Sbjct: 922 QTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLR 981
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA-ICGI 844
LRQAC HP V+G + L +S++ M + L ++ C EA +C +
Sbjct: 982 LRQACCHPQAVRG-EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL 1032
Score = 223 (83.6 bits), Expect = 6.4e-42, Sum P(5) = 6.4e-42
Identities = 54/154 (35%), Positives = 88/154 (57%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P+++++++ L
Sbjct: 1533 GAKALVFSTWQDVLDIISKALTDNNMEFAQIS-RVKTFQENLSA--FKHDPQINILLLPL 1589
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1590 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1649
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+ K E S + + LTV DL LF
Sbjct: 1650 ML-KTAER--SHTNPSAKHSEASVLTVADLADLF 1680
Score = 111 (44.1 bits), Expect = 6.4e-42, Sum P(5) = 6.4e-42
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVS 563
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 564 MEV 566
E+
Sbjct: 782 SEL 784
Score = 80 (33.2 bits), Expect = 8.9e-39, Sum P(5) = 8.9e-39
Identities = 36/135 (26%), Positives = 57/135 (42%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI---QVNGLDL 472
GGILAD+ GLGKT+ +ALIL T D K+ TL + N Q +G ++
Sbjct: 373 GGILADEMGLGKTVEVLALILTH------TRQDVKQDALTLPEGKVVNYFIPSQYSGENV 426
Query: 473 VKQESDYCRVVPNG------SSAKSFNFVEQAKGRPAAGTLVVCP--TSVLRQWAEELRN 524
E+ + P + V++ G+ L + +S+ R + RN
Sbjct: 427 KNTETQHMEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQ--RN 484
Query: 525 KVTSKGSLSVLVYHG 539
+ K L L++ G
Sbjct: 485 RSLLKRMLKCLIFEG 499
Score = 68 (29.0 bits), Expect = 6.4e-42, Sum P(5) = 6.4e-42
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS-SVFSKATLNN 899
C IC + V CGH FCN+CI + + + I+ ++ S ++
Sbjct: 1437 CPICARQLGKQWAVLTCGHCFCNECIS--IIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1494
Query: 900 SLSQRQPGQE--IPTDYSDSKLVEA 922
+ + QE IP S S VEA
Sbjct: 1495 VFTSEKASQEEDIPVKGSHSTKVEA 1519
Score = 54 (24.1 bits), Expect = 9.4e-25, Sum P(5) = 9.4e-25
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 935 IKAALEV-LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLD 982
IKA +E +Q++ K + TN S +HS S+ D DL +T D
Sbjct: 1639 IKATIEERMQAMLKTAERSHTNPSAKHS-EASVLTVADLADLFTKETED 1686
Score = 51 (23.0 bits), Expect = 6.4e-42, Sum P(5) = 6.4e-42
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 392 PLLR-HQRIALSWMVQKE 408
P+LR +QR A++WM+Q+E
Sbjct: 307 PVLRPYQREAVNWMLQQE 324
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 257 (95.5 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 62/165 (37%), Positives = 93/165 (56%)
Query: 994 KCSIDSIK--LGG--EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKD 1049
K ID ++ L G +K IV SQW L ++ L+D S + +G ++ R+ ++D
Sbjct: 773 KMVIDKLEELLTGTNDKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLRD 832
Query: 1050 FNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVL 1109
FN E V+++SL A +GLN+ A H+L++DL WNP E QA DR +R GQT+P +
Sbjct: 833 FNANNEKRVLLLSLTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFIY 892
Query: 1110 RLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLN 1154
R ++TVE RI +LQ K E+ E+ GG+ T+ LN
Sbjct: 893 RYMCQDTVEQRIKSLQDCKLEIAKVVLPEE--GGEVTKCVGGGLN 935
Score = 180 (68.4 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 48/148 (32%), Positives = 76/148 (51%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL V W RV+LDEA I+N +T + LRA W L+GTP+QN D+++ RF+
Sbjct: 440 PLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDVFALLRFVN 499
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
F + + K ++++ + G+++L ++K +MLRRTK L + LP I
Sbjct: 500 VPNFQDLQQW----KKNLNESML-GHRRLNFIIKPLMLRRTKQKLQASGDMPALPSLKIE 554
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEY 774
L V + E Y L S+ F ++
Sbjct: 555 LICVQLSKTEMAVYQILSAISKKIFTQF 582
Score = 157 (60.3 bits), Expect = 1.5e-41, Sum P(4) = 1.5e-41
Identities = 43/133 (32%), Positives = 72/133 (54%)
Query: 440 PPSFRTEDDNKRQLETLN-LDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQ- 497
PP RT +++ LD++DN + + ++ D P S E
Sbjct: 304 PPEKRTCHVKTKKINQFRILDDDDNDAGDKAV-VEDEQKDLLAKTPEPEVFSSDEEEEHL 362
Query: 498 AKGR-PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-FDVV 555
+ GR P+A TLVVCP SV+ QWA E+ +KV ++ ++ VL +HG +R + E + +D+V
Sbjct: 363 SNGRYPSANTLVVCPMSVMCQWAHEVASKV-AQNAIRVLTFHGPNRHEIGIEAFRSYDLV 421
Query: 556 ITTYSIVSMEVPK 568
IT+Y++V E+ +
Sbjct: 422 ITSYNLVVNELKR 434
Score = 151 (58.2 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED 447
+L V LL+HQ+ L WM +E + SGGILADD GLGKT+S IALIL R +
Sbjct: 204 LLLVRLLKHQQSCLKWMQFRERQKI--SGGILADDMGLGKTLSMIALILASEETKNRKRE 261
Query: 448 DNKRQLETLNLDEEDNGI 465
+ K+ L TL +E N +
Sbjct: 262 EKKKAL-TLKWTQEFNRV 278
Score = 74 (31.1 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 39/127 (30%), Positives = 56/127 (44%)
Query: 699 MIKVPISKNPVKGYKKLQAVLKTI----MLRRTKGTLLDGEPIINLPPKVIMLKQVDFTD 754
+I V +SK + Y+ L A+ K I +L+R KG + P+ I
Sbjct: 555 LICVQLSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSLERTPQFI----AGHMS 610
Query: 755 EERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR 814
+ER Y+ EI R K K + IL++LLRLRQ C HP L+ G +L
Sbjct: 611 DER--YN--EIYERF-LKSLGYNPGEKILGIYILVLLLRLRQFCCHPGLMIGMLRGALTA 665
Query: 815 SSVEMAK 821
V+ K
Sbjct: 666 EDVQNVK 672
Score = 41 (19.5 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 212 SSSRSPIDG-RHLSLNLNGSRQYFPYAQPSTLNKKELDGVKE 252
SS +D R L L LN F + +PS K +D ++E
Sbjct: 741 SSFEDQLDSARALKL-LNPQNPIFQFIRPSAKLKMVIDKLEE 781
Score = 37 (18.1 bits), Expect = 1.5e-41, Sum P(4) = 1.5e-41
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 23 LLSSEETATKPKDEEGEFTT 42
+L+SEET + ++E+ + T
Sbjct: 249 ILASEETKNRKREEKKKALT 268
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 332 (121.9 bits), Expect = 8.3e-42, Sum P(4) = 8.3e-42
Identities = 135/522 (25%), Positives = 215/522 (41%)
Query: 415 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 474
SGG+L D GLGKT+ ++L LK P + + + +K E LN D Q L+K
Sbjct: 637 SGGMLCDKMGLGKTLMILSLSLKNHP-IYSSHEIHK---EILN----DIKPQ-----LIK 683
Query: 475 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSK--GSL 532
+ Y + S S + K TLV+ P SVL+QW +L + L
Sbjct: 684 RRKKYFIGTDSSSDLSSSSSSSPTKITLPKSTLVILPFSVLKQWRNQLELHLQPDFLKKL 743
Query: 533 SVLVYHGSSR---TKDPCELAKFDVVITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLP 589
++++YHG++R T+D +L K D V TT+ S+E +P
Sbjct: 744 NIIIYHGTNRKSITQD--QLIKADFVFTTHQTFSIEYSFYEKERKNKSSSAISTSLIPIP 801
Query: 590 PMYXXXXXXXXXXXXXXXXGSKQKKGPDGLLLD----IVAGPLAKVGWFRVVLDEAQSIK 645
+ + + + I+ PL + W+RV++DE+ K
Sbjct: 802 LINEDVIITTTTTTTTTTNNNNSNNNNNQKQISSKFTIIPPPLLCIHWWRVIIDESHKFK 861
Query: 646 NHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 705
H++ R+ L + RWCL+GTP QN DL+ FL P A K+ + K+ S
Sbjct: 862 -HKSLFFRSLQNLDSVNRWCLTGTPYQNNCTDLFPMLYFLNVFPIA--KNIATWRKLVES 918
Query: 706 KNPVKGYKK-LQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLE 764
KK L+ L I+L R+K + + + ++I +++F E D YS +
Sbjct: 919 IQDQSEKKKILKKYLNPIILSRSKKDVRIQQNQVY--EEII---ELEFDQNESDAYSLVF 973
Query: 765 INSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR----SSVEMA 820
+S + F+ G + +Y +L ++LRLR+ CDH L K S L SS
Sbjct: 974 KDSNETFERIQDRGDLNHHYNLVLHLILRLRRCCDHSSLTKPIQSTLNLGQFFCSSCFEE 1033
Query: 821 KKLPQERQMYLLNCLEASLAICGI-----CNDPPEDAVVSICGHVFCNQCICERLTADDN 875
P + + +C C I P D + S V C +C L N
Sbjct: 1034 IPSPHNENLLISDCDHLYCKACYIYLLVVVVRPINDQLNSHA-IVSCERCDTNPLQFTMN 1092
Query: 876 QCPTRNCKIRLSLSSVFSK-----ATLNNSLSQRQPGQEIPT 912
+ +++ +F K TL++S S + G PT
Sbjct: 1093 LQQEKYKQLKKKQKDLFDKFKEDSTTLSSSSSSQMGGASTPT 1134
Score = 227 (85.0 bits), Expect = 8.3e-42, Sum P(4) = 8.3e-42
Identities = 81/271 (29%), Positives = 129/271 (47%)
Query: 898 NNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHS 957
NN+ + +DYSD + + E + + KI + K N N+S
Sbjct: 1244 NNNNNNNNNNNNNNSDYSDDLVSKDDELE--FEQTFKITPKKGTRKRDIKSNNN---NYS 1298
Query: 958 LRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE-KAIVFSQWTKM 1016
+ GSI D N+++ +L N S +N I A ++ + K + K IVFS WT
Sbjct: 1299 KKK--RGSII---DENEIN---SLKN-SQKN--IIA--NLKNAKGKNQLKGIVFSHWTMF 1345
Query: 1017 LDLLEASL--KD--SSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-----VMIMSLKAAS 1067
LDL+E SL D + + R+DG + + R+ + F +M+MS+
Sbjct: 1346 LDLIEESLIANDWIKDVDFCRIDGKLPISKREAIIDSFQAKSNNGNGGPRLMLMSITCGG 1405
Query: 1068 LGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1127
+GLN+ A V L++ W P+ E+QAI R RIGQTR + V R +K T+E +L L
Sbjct: 1406 IGLNLERANIVYLMEPSWTPSIEEQAIGRVDRIGQTRDIFVKRFIIKKTIEVGMLKLHDA 1465
Query: 1128 KREMVASAFGEDETGGQQT-RLTVDDLNYLF 1157
K+ + +DE ++ +LTV ++ LF
Sbjct: 1466 KKNNSNAFLTDDEIELEENPKLTVQEMKSLF 1496
Score = 45 (20.9 bits), Expect = 8.3e-42, Sum P(4) = 8.3e-42
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILAD 421
LL HQ+ + WM ++E +G L++
Sbjct: 574 LLEHQKEGIWWMRKRELEPFITNGQTLSE 602
Score = 37 (18.1 bits), Expect = 8.3e-42, Sum P(4) = 8.3e-42
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 96 ITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLF 133
I++ D + + S + R + F+KDE DD +
Sbjct: 127 ISIDDDEEIIDDIPFVDSENCRIT-IDFSKDEHEDDYY 163
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 391 (142.7 bits), Expect = 9.6e-40, Sum P(4) = 9.6e-40
Identities = 83/234 (35%), Positives = 135/234 (57%)
Query: 626 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685
G L V +FRV+LDEA IKN R++ ARAC+ L+A RW L+GTPI N ++DL+S RFL
Sbjct: 641 GNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFL 700
Query: 686 RYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLL-DGEPIINLPPK 743
R +P+ + + + I P SK V+ +Q VL+ ++LRRTK +GEP++ LP +
Sbjct: 701 RVEPWNNFSFWKTFITAPFESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKR 760
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
I +++V+ ++ER+ Y+ + ++ F AAGT+ ++Y I LLRLRQ C HP+L
Sbjct: 761 TIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPIL 820
Query: 804 VKG---FDSNSLLRSSVEMAKKLPQERQMY-LLNCLEASLAICGICNDPPEDAV 853
+ ++ + L + + L+N A+ + N+PP+ ++
Sbjct: 821 TRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSM 874
Score = 237 (88.5 bits), Expect = 5.5e-23, Sum P(4) = 5.5e-23
Identities = 93/379 (24%), Positives = 164/379 (43%)
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEA----SLAICGICNDPP 849
L+ D L+ F + + S E + + P + + L S C IC++ P
Sbjct: 843 LKDDMDLQELINRFTATT---SDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEP 899
Query: 850 E-DAVVSICGHVFCNQCICERLTAD-DNQCPTR--NCKIRLSLSSVFSKATLNNSLSQRQ 905
D V+ C H C C+ + + D R +C+ L+ +F + + Q
Sbjct: 900 MIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDIFE-------VVRYQ 952
Query: 906 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 965
PT+ + S + + V Y+SS+ + P + + H+
Sbjct: 953 SPNTTPTEQTPSSI----GGDNV-YSSSQPPPPPRISLRRINPLSPSAHTSAKIHALLAH 1007
Query: 966 IC-CP-GDSNDLHGGDT--LDNISDENEKIAAK-CSIDSIKLGGEKAIVFSQWTKMLDLL 1020
+ P G + + T LD I + K +D +A V +Q+TK
Sbjct: 1008 LVRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEVLAQFTKF---- 1063
Query: 1021 EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080
E ++ Q + K K ++ +V+++SLKA +GLN+ AA +V +
Sbjct: 1064 ETFTQEELDQAESTSAPSGLTPTPKTPKQSSSPSSPTVLLISLKAGGVGLNLTAASNVFM 1123
Query: 1081 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1140
+D WW+ E QAIDR HR+GQ R V+V+R VK+++E+R+L +Q++K +A + G
Sbjct: 1124 MDPWWSFAIEAQAIDRVHRMGQLRDVNVVRFIVKDSIEERMLRVQERKMG-IAGSLGLMG 1182
Query: 1141 TGGQQTRLT--VDDLNYLF 1157
G ++ R +++L LF
Sbjct: 1183 EGNEEERRKERIEELRLLF 1201
Score = 92 (37.4 bits), Expect = 9.6e-40, Sum P(4) = 9.6e-40
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 413 HCSGGILADDQGLGKTISTIALILKER--PPS 442
HC GGILAD+ GLGKTI ++L+ R PP+
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNLPPT 540
Score = 81 (33.6 bits), Expect = 9.6e-40, Sum P(4) = 9.6e-40
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 542
TLVV P S+L QW E K + GS+ VL+Y+G+ +
Sbjct: 561 TLVVAPMSLLAQWEGEAL-KASRNGSMKVLMYYGNEK 596
Score = 47 (21.6 bits), Expect = 9.6e-40, Sum P(4) = 9.6e-40
Identities = 24/98 (24%), Positives = 38/98 (38%)
Query: 66 KVPAIDYLDAKRQCED---SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMV 122
K PA+D + D S NG P + +G + QP T + + + + +
Sbjct: 31 KSPALDASSSASTHTDPNYSANGSPAQIQTQQEYNFSNGGHATQPATAAGTRTHQAQSP- 89
Query: 123 FAKDEGND-DLFPCWSTVSDSVEPIDEAVGRNSSYHDG 159
A D +D D S V + V P E + + DG
Sbjct: 90 -AHDTLSDFDTEAFVSIVGEQVSP--ETLSQIRKLSDG 124
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 232 (86.7 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 63/217 (29%), Positives = 102/217 (47%)
Query: 623 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYF 682
++ PL ++ W+R+ LDEAQ ++++ L K RWC++GTPIQ +DDL+
Sbjct: 590 VIPTPLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLL 649
Query: 683 RFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
+FL+ +PF V + + +I+ P + K + K +M R +K + D + LPP
Sbjct: 650 KFLKANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADE---LQLPP 706
Query: 743 KVIMLKQVDFTDEERDFYSQ------------LEINSRDQFKEYAAAG----TVKQNYVN 786
+ + + F+ E FYS+ +E RD K +
Sbjct: 707 QEECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAK 766
Query: 787 ILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKL 823
+L LL+LRQAC HP V SL +S + M + L
Sbjct: 767 LLNSLLKLRQACCHPQ-VGSSGLRSLQQSPMTMEEIL 802
Score = 205 (77.2 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 57/164 (34%), Positives = 87/164 (53%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDG------TMSVF-ARDKAVKDFNTLPE--- 1055
K +VFS W +LD+LE + +SI R+ G +S F +K + N+ +
Sbjct: 1451 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1510
Query: 1056 -VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
+ V+++ ++ + GLN++ A HV+L++ NP E QA+ R HRIGQ +P V R V
Sbjct: 1511 SIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVS 1570
Query: 1115 NTVEDRILALQQKKREMVASAFGEDETGGQ-QTRLTVDDLNYLF 1157
TVE+ I L + K ++S F T Q Q LT+ DL LF
Sbjct: 1571 GTVEESIYKLNRNKNTNLSS-FSSRNTKNQDQQFLTLKDLESLF 1613
Score = 104 (41.7 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG---SSRTKDPC----ELAKFDVVITT 558
TL+VCP +L QW E+ + T GSL +Y G +S +++P EL D+V+TT
Sbjct: 502 TLIVCPAPILPQWHSEI-TRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTT 560
Query: 559 YSIVSMEV 566
Y ++ ++
Sbjct: 561 YDVLKEDL 568
Score = 82 (33.9 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 408 ETSSLHCSGGILADDQGLGKTISTIALILKERPPS 442
E S GGILAD+ GLGKT+ +A I R P+
Sbjct: 349 EYFSPRIQGGILADEMGLGKTVELLACIFSHRKPA 383
Score = 70 (29.7 bits), Expect = 4.5e-23, Sum P(5) = 4.5e-23
Identities = 59/269 (21%), Positives = 111/269 (41%)
Query: 723 MLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYS----QLEI----NSRDQFKEY 774
+L R + LL IN+ + L++ ++++ Y+ +L++ N+ D+F
Sbjct: 1230 VLARDQAQLLRAYDEINMSTMRLQLRE---SEDDTSIYALGRDELDVASVLNTNDKFMAQ 1286
Query: 775 AAAGTVKQNYVNIL-LMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 833
++ ++K + LM + +Q + P D +S + +V+ + QE + N
Sbjct: 1287 SSLLSIKGKLRYLKGLMKSKQKQESESP------DLSSPIHETVDASDPAEQESE----N 1336
Query: 834 CLEASLAICGICNDPPEDA-VVSICGHVFCNQC---ICERLTADDN-----QCPTRNCKI 884
L+ A C IC++ + +V CGH C C + ER + + CP C+
Sbjct: 1337 LLKRDEA-CPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQETLQKWVMCPI--CRQ 1393
Query: 885 RLSLSSVFSKATLNNSLSQRQPGQE----IPTDYSDSKLVEAPSCEGVWYNSSKIKAALE 940
+ ++ NS S Q ++ + S +EA + +W SS + +
Sbjct: 1394 HTDVRNIAYADDRRNSSSSDQDHKDSEASLVVQGSYGTKIEAVTRRILWIKSSDPQTKVL 1453
Query: 941 VLQSLAKPRGNTVTNHSLRHSFNG-SICC 968
V S N V + L H+F SI C
Sbjct: 1454 VFSSW-----NDVLD-VLEHAFAANSITC 1476
Score = 50 (22.7 bits), Expect = 1.1e-39, Sum P(5) = 1.1e-39
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 373 QGISQPNAEASAPDGVL-AVPLLR-HQRIALSWMVQKE 408
+ I +A D + +P LR +QR A WMVQ+E
Sbjct: 266 EAIKPSKTDAMLGDDIADLLPELRPYQRRAAYWMVQRE 303
Score = 44 (20.5 bits), Expect = 2.5e-23, Sum P(5) = 2.5e-23
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1094 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1126
+DR ++ T+ + L + K V R+LA Q
Sbjct: 1203 LDRESKLAATKHLHTLEVMRKEYVHARVLARDQ 1235
Score = 37 (18.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 188 AKEEHEDLILESKRARFCQEI 208
A++E E+L+ + C EI
Sbjct: 1330 AEQESENLLKRDEACPICHEI 1350
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 263 (97.6 bits), Expect = 1.2e-39, Sum P(4) = 1.2e-39
Identities = 56/153 (36%), Positives = 89/153 (58%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLK 1064
K ++FSQWTK+LD+++ + + R+DG++ + R + +KDF+ S+ ++S +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL-- 1122
A LG+N+ AA +L D WNP + QA+DR HRIGQT+PV V RL+ ++E R+L
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKR 661
Query: 1123 ALQQKKREMVASAFGE--DETGGQQTRLTVDDL 1153
A + K E V G+ E T L +D+
Sbjct: 662 AYSKLKLEHVVIGQGQFHQERAKSSTPLEEEDI 694
Score = 179 (68.1 bits), Expect = 1.2e-39, Sum P(4) = 1.2e-39
Identities = 58/198 (29%), Positives = 93/198 (46%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W VV+DE +KNH+ ++ R L+ + L+GTP+QN + +L+S F+ D F
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTS 386
Query: 693 YKSFCSMI-----------KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 741
+ F S K K + KL +L+ +LRR K D E ++LP
Sbjct: 387 HDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMK---CDVE--LSLP 441
Query: 742 PKVIMLKQVDFTDEERDFYSQLEINSRD-QFKEYAAAGTVKQNYVNILLMLLRLRQACDH 800
K ++ TD ++ F L N+ + E A G + +N L+ ++LR+ C+H
Sbjct: 442 RKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLV--IQLRKNCNH 499
Query: 801 PLLVKGFDSNSLLRSSVE 818
P L++G S L VE
Sbjct: 500 PDLLQGQIDGSYLYPPVE 517
Score = 92 (37.4 bits), Expect = 1.2e-39, Sum P(4) = 1.2e-39
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 544
G + ++ F+ KG G LV+ P S L W E+ + T S++ ++YHG +
Sbjct: 232 GKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIA-RFTP--SINAIIYHGDKNQR 288
Query: 545 D-------PCELA-KFDVVITTYSIVSMEVPKQPL 571
D P + KF +VIT+Y V+M K+ L
Sbjct: 289 DELRRKHMPKTVGPKFPIVITSYE-VAMNDAKRIL 322
Score = 72 (30.4 bits), Expect = 1.2e-39, Sum P(4) = 1.2e-39
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q + W++ + L+ GILAD GLGKTI TI +
Sbjct: 202 LKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIGFL 241
Score = 46 (21.3 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 930 YNSSKIKAALEVLQSLAKPRGNTVTN 955
YN++K K A+ + S +K G T+ +
Sbjct: 153 YNNTKAKRAVAAMISRSKEDGETINS 178
Score = 37 (18.1 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 18/88 (20%), Positives = 37/88 (42%)
Query: 421 DDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC 480
D++ S +A L E + E + QL + L E+ I +NG++ Q+++
Sbjct: 80 DEEKANNAGSAVAPNLNETQFTKLDELLTQTQLYSEFLLEKMEDITINGIESESQKAEPE 139
Query: 481 RVVPNGSSAKSFNFVEQAKGRPAAGTLV 508
+ G K+ + K + A ++
Sbjct: 140 KT-GRGRKRKAASQYNNTKAKRAVAAMI 166
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 236 (88.1 bits), Expect = 1.6e-39, Sum P(4) = 1.6e-39
Identities = 58/164 (35%), Positives = 92/164 (56%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTLPE 1055
I++IK E ++F+Q+ M ++L+ L++ Q L+G++ RDK ++ F
Sbjct: 759 IENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQN-GT 817
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
+ I+SLKA GLN+ AA HV+ D WWNP E+QA DRA+RIGQ R V V +L
Sbjct: 818 YDIFILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTG 877
Query: 1116 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159
T+E++I + ++K+ + + D T L+ D+L L V
Sbjct: 878 TLEEKIDEMLERKQSLNNAVITSDSW---MTELSTDELKELLGV 918
Score = 222 (83.2 bits), Expect = 1.6e-39, Sum P(4) = 1.6e-39
Identities = 61/193 (31%), Positives = 101/193 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L+ + W V+LDEAQ+IKN T+ ++A L+A + L+GTP++N + +L+S F F+ +
Sbjct: 566 LSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINH 625
Query: 688 DPFAVYKSFCSMIKVPISKNPVKG-YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
F PI K+ +G +++Q + +LRRTK D +NLP K
Sbjct: 626 GYLGSLGQFQRRFVSPIEKDRDEGKIQQVQRFISPFLLRRTKK---DQTVALNLPDKQEQ 682
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL-VK 805
T E+ Y QL + Q E +G ++ + ILLML +L+Q C+HP L +K
Sbjct: 683 KAYCPLTGEQASLYEQL-VQDTLQNVE-GLSGIERRGF--ILLMLNKLKQICNHPALYLK 738
Query: 806 GFDSNSLLRSSVE 818
+ ++ S++
Sbjct: 739 ETEPKDIIERSMK 751
Score = 82 (33.9 bits), Expect = 1.6e-39, Sum P(4) = 1.6e-39
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE---LAKFDVVITTYSIVS 563
L+V PTSVL W +E + L V +++GS+R K L DVV+T+Y++
Sbjct: 504 LIVAPTSVLGNWQKEFERFAPN---LRVQLHYGSNRAKGESFKDFLQSADVVLTSYALAQ 560
Query: 564 ME 565
++
Sbjct: 561 LD 562
Score = 72 (30.4 bits), Expect = 1.6e-39, Sum P(4) = 1.6e-39
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRT 445
L L +Q+ + W++ G +LADD GLGK+I TI +L + + +T
Sbjct: 447 LHATLRPYQQHGIEWLLYLRKLGF---GALLADDMGLGKSIQTITYLLYIKENNLQT 500
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 266 (98.7 bits), Expect = 2.0e-39, Sum P(5) = 2.0e-39
Identities = 56/164 (34%), Positives = 94/164 (57%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
++ + G++ ++FSQ+TKML ++ L +I Y LDG R + FN E
Sbjct: 905 LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNE-GEG 963
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++SLKA GLN+ A V+L DLWWNP E QA DRA+R+GQ V V++L T
Sbjct: 964 DLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGT 1023
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQ-TRLTVDDLNYLFMV 1159
+E+++ LQ+ K+ ++A E G ++ + +T +++ + M+
Sbjct: 1024 IEEKMHELQESKKNLIAEVI---EPGEEKLSSITEEEIRDILMI 1064
Score = 186 (70.5 bits), Expect = 2.0e-39, Sum P(5) = 2.0e-39
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 638 LDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 697
LDEAQ+ KN TQ ARA ++A+ R+ L+GTP++N++++L+S F + + K F
Sbjct: 737 LDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKEFG 796
Query: 698 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 757
+ + I+K +K +LRR K +L LP K+ L+ + +++
Sbjct: 797 DLRREDIAKR-----------VKPFVLRRLKEDVLK-----ELPDKIEHLQSSELLPDQK 840
Query: 758 DFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLVKGFDSNS 811
Y+ R++ ++ T+++N + IL L RLRQ C HP L V + +S
Sbjct: 841 RLYAAYLAKLREETLKHLDKDTLRKNKIRILAGLTRLRQICCHPALFVDDYKGSS 895
Score = 92 (37.4 bits), Expect = 2.0e-39, Sum P(5) = 2.0e-39
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 368 LQVAMQGISQPNA-EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLG 426
+Q ++ I P + + P + AV + +Q WM +T + + GGILADD GLG
Sbjct: 588 VQDLVESIQNPKKLKFTVPQTLRAV-MREYQVYGFEWM---KTLAYYRFGGILADDMGLG 643
Query: 427 KTISTIALI 435
KT+ +IA I
Sbjct: 644 KTLQSIAYI 652
Score = 75 (31.5 bits), Expect = 2.0e-39, Sum P(5) = 2.0e-39
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEV 566
LVV P+S++ W EL+ K + + + R K ++A+FDVVIT+Y ++ ++
Sbjct: 667 LVVSPSSLVYNWLSELK-KFAPHIRAVIADGNQAERRKILKDVAEFDVVITSYPLLRRDI 725
Score = 37 (18.1 bits), Expect = 2.0e-39, Sum P(5) = 2.0e-39
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 113 SHSSRTKQMVFAKDEGNDD 131
+H TK++ A +GN+D
Sbjct: 34 NHYDETKEICEATVKGNED 52
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 237 (88.5 bits), Expect = 2.7e-39, Sum P(5) = 2.7e-39
Identities = 58/221 (26%), Positives = 119/221 (53%)
Query: 910 IPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCP 969
+ TD + +LV+ + +G + +KI++ ++ + ++ K T+ + + + + +
Sbjct: 1620 LSTDKENGELVDNSNVKGSY--GTKIESLVQSVINIQKKSIKTIQPNIIPTTTSTTTTTT 1677
Query: 970 GDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSI 1029
+ + + T NI+ + + +SI +K I+FSQW +L+++ +LK++ I
Sbjct: 1678 TTTTNTNTNTTNSNINIKKD--------ESI----QKIIIFSQWADVLEIISRALKENEI 1725
Query: 1030 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1089
Q+ + S F + A+ F P V+V+++ L GLN++ A HV L++ NP
Sbjct: 1726 QFAKAVHRGSSF--EMAINQFRKDPNVNVLLLPLIKGGNGLNLIEATHVFLVEPILNPAL 1783
Query: 1090 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1130
E QAI+R HR GQ + ++ R +KNT+E++++ + Q K +
Sbjct: 1784 EKQAINRVHRFGQNKETNIHRFIIKNTIEEKVVQMNQLKEQ 1824
Score = 202 (76.2 bits), Expect = 2.7e-39, Sum P(5) = 2.7e-39
Identities = 62/206 (30%), Positives = 105/206 (50%)
Query: 631 VGWFRVVLDEAQSIKNH-RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+ W+R+ LDEAQ +++ +T+ + GL + RWCL+GTPIQ ++DD++ F FLR +P
Sbjct: 847 IKWWRICLDEAQMVESSSQTKYKKLALGLESHYRWCLTGTPIQRSLDDMFGLFEFLRLEP 906
Query: 690 FAV-YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM-L 747
F+ Y C ++ ++ ++ ++M+R +K ++ E + LP +
Sbjct: 907 FSSRYWWNCIILHKYLALGEQSFLDWFHCIVHSVMIRNSKA-MIRNE--LQLPNQYDNDT 963
Query: 748 KQVDFTDEERDFYSQLEINSRDQ-----FKEYAAAGTVKQN----YVN-ILLMLLRLRQA 797
K + F+ E +Y Q + N Q F++Y G Q+ ++N IL LL LRQ
Sbjct: 964 KLLRFSMVEAHYY-QKKANECSQEARLLFQKYFRGGRSIQDISISHLNSILAPLLVLRQT 1022
Query: 798 CDHPLLVKGFDSNSLLRSSVEMAKKL 823
C H V G L S++ M + L
Sbjct: 1023 CQH-FQVGGHAVKPLTMSTMTMEQLL 1047
Score = 114 (45.2 bits), Expect = 2.7e-39, Sum P(5) = 2.7e-39
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVS 563
TL+V P ++ QW EE+ V L V +Y+G + K +P +LA +D+V+TTY ++S
Sbjct: 762 TLIVAPNTIFTQWQEEI---VKHTNGLKVYIYNGIYKDKINPFQLADYDLVLTTYDVLS 817
Score = 81 (33.6 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 33/161 (20%), Positives = 73/161 (45%)
Query: 840 AICGICNDP-PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLN 898
+IC IC + ++ V+ +CGH FC C+ + N C T C I + S++
Sbjct: 1563 SICAICQEVFGKNVVMLLCGHSFCYDCVMFMIEKVPN-CRTIQCPICRARSNI------- 1614
Query: 899 NSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSL 958
+S + TD + +LV+ + +G + +KI++ ++ + ++ K T+ + +
Sbjct: 1615 EEISY------LSTDKENGELVDNSNVKGSY--GTKIESLVQSVINIQKKSIKTIQPNII 1666
Query: 959 RHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDS 999
+ + + + + + T NI+ + ++ K I S
Sbjct: 1667 PTTTSTTTTTTTTTTNTNTNTTNSNINIKKDESIQKIIIFS 1707
Score = 79 (32.9 bits), Expect = 2.7e-39, Sum P(5) = 2.7e-39
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 404 MVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 441
++ + L GGILAD+ GLGKT+ + L+L P
Sbjct: 539 LLSDKKDDLSLMGGILADEMGLGKTVEFLGLVLSHPKP 576
Score = 40 (19.1 bits), Expect = 2.7e-39, Sum P(5) = 2.7e-39
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 143 VEPIDEAVGRNSSYHDGCNSFPFKDS 168
+E +DE ++SS +D NS DS
Sbjct: 357 IEMVDEPDNQDSSNNDHNNSLSTIDS 382
Score = 38 (18.4 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 270 LSPES-IQSNSSDCKSHVDDEPDICIL 295
LS +S +N+++ S V DE IC +
Sbjct: 1541 LSTKSNTNTNNNNNNSTVTDEKSICAI 1567
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 255 (94.8 bits), Expect = 1.5e-38, Sum P(5) = 1.5e-38
Identities = 55/141 (39%), Positives = 86/141 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1044 DKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1101
++A++ FN +P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHRIG
Sbjct: 545 EEAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 603
Query: 1102 QTRPVSVLRLTVKNTVEDRIL 1122
Q +PV V RL NTVE+RI+
Sbjct: 604 QKKPVRVFRLITDNTVEERIV 624
Score = 195 (73.7 bits), Expect = 1.5e-38, Sum P(5) = 1.5e-38
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 1.5e-38, Sum P(5) = 1.5e-38
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.5e-38, Sum P(5) = 1.5e-38
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 562 VSME 565
V E
Sbjct: 296 VIKE 299
Score = 38 (18.4 bits), Expect = 1.5e-38, Sum P(5) = 1.5e-38
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 258 (95.9 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 62/154 (40%), Positives = 84/154 (54%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G K ++FSQ+T ML L+E L+ I Y +L G + R + F + V ++SL
Sbjct: 947 GRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQE-GDTPVFLISL 1003
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA GLN+ AA V+ D WWNP E QA DRAHRIGQ PV V +L + TVE++I
Sbjct: 1004 KAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQE 1063
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+QQ K+ + S G Q + D+L LF
Sbjct: 1064 MQQHKQGLADSILEGKGNGAWQG--SADELLSLF 1095
Score = 196 (74.1 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 636 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 695
+VLDEAQ IKN + +V++ L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 696 FCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTD 754
F + I + + K L + +LRRTK E + LPPK + + ++
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEK 869
Query: 755 EERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
++R+ Y + ++ + +E A V +++ L LL+LRQAC P LVK
Sbjct: 870 DQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVK 920
Score = 114 (45.2 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 486 GSSAKSFNFV-EQAKGRPAAG----TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
G + ++ F+ +Q + + AAG +L++CPTS++ WA+E S L++ V HG+
Sbjct: 662 GKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPS---LTLAVIHGA 718
Query: 541 SRTKDPCELAKFDVVITTYSIV 562
R L++FDVV+TTY ++
Sbjct: 719 QRGPLLARLSEFDVVVTTYPLM 740
Score = 100 (40.3 bits), Expect = 4.7e-37, Sum P(4) = 4.7e-37
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
L L +Q+ L+W+ + L GGILADD GLGKTI T+A +LK++
Sbjct: 628 LQAELRPYQQQGLNWLCFLKEYQL---GGILADDMGLGKTIQTLAFLLKQK 675
Score = 37 (18.1 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDY 72
DP + + L KD G F E+ G +GG KGS + + + Y
Sbjct: 122 DPRLNDVESLYDDRVLYILSKDNNGVFI-ELRRGKLG----KKGGYNKGSKIALSDVQY 175
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 258 (95.9 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 62/154 (40%), Positives = 84/154 (54%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G K ++FSQ+T ML L+E L+ I Y +L G + R + F + V ++SL
Sbjct: 947 GRKILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL--RQVQIDKFQE-GDTPVFLISL 1003
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA GLN+ AA V+ D WWNP E QA DRAHRIGQ PV V +L + TVE++I
Sbjct: 1004 KAGGTGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQE 1063
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+QQ K+ + S G Q + D+L LF
Sbjct: 1064 MQQHKQGLADSILEGKGNGAWQG--SADELLSLF 1095
Score = 196 (74.1 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 636 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 695
+VLDEAQ IKN + +V++ L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 696 FCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTD 754
F + I + + K L + +LRRTK E + LPPK + + ++
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEK 869
Query: 755 EERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
++R+ Y + ++ + +E A V +++ L LL+LRQAC P LVK
Sbjct: 870 DQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACCDPRLVK 920
Score = 114 (45.2 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 486 GSSAKSFNFV-EQAKGRPAAG----TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
G + ++ F+ +Q + + AAG +L++CPTS++ WA+E S L++ V HG+
Sbjct: 662 GKTIQTLAFLLKQKQLKSAAGPHLPSLIICPTSLVGNWAKEAAKFAPS---LTLAVIHGA 718
Query: 541 SRTKDPCELAKFDVVITTYSIV 562
R L++FDVV+TTY ++
Sbjct: 719 QRGPLLARLSEFDVVVTTYPLM 740
Score = 100 (40.3 bits), Expect = 4.7e-37, Sum P(4) = 4.7e-37
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
L L +Q+ L+W+ + L GGILADD GLGKTI T+A +LK++
Sbjct: 628 LQAELRPYQQQGLNWLCFLKEYQL---GGILADDMGLGKTIQTLAFLLKQK 675
Score = 37 (18.1 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDY 72
DP + + L KD G F E+ G +GG KGS + + + Y
Sbjct: 122 DPRLNDVESLYDDRVLYILSKDNNGVFI-ELRRGKLG----KKGGYNKGSKIALSDVQY 175
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 273 (101.2 bits), Expect = 1.2e-37, Sum P(5) = 1.2e-37
Identities = 53/132 (40%), Positives = 82/132 (62%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K G +A++F+Q TKMLD+ E L + Y RLDG+ + R + FNT P++ +
Sbjct: 1391 LKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTERFNTDPKIFLF 1450
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ LGLN+ A V+ D WNP+ + QA DR HRIGQTR V++ R ++T+E+
Sbjct: 1451 ILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRFITQHTIEE 1510
Query: 1120 RILALQQKKREM 1131
IL +KR++
Sbjct: 1511 NILKKSNQKRQL 1522
Score = 173 (66.0 bits), Expect = 1.2e-37, Sum P(5) = 1.2e-37
Identities = 52/177 (29%), Positives = 89/177 (50%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEA IKN +TQ + +RR L+GTP+QN + +L+S FL D F
Sbjct: 903 WVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQS 962
Query: 693 YKSFCSMIKVPISKNPVKG--------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
++ F P++ ++G +L AVL+ +LRR K D E +PPK
Sbjct: 963 HREFQDWFSNPVT-GMIEGGDDVNEDIINRLHAVLRPFLLRRLKK---DVEK--QMPPKH 1016
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
+ + ++ Y + INS + ++G+ + +I+ +L++LR+ C+HP
Sbjct: 1017 THIVPCSMSRRQKFLYEEF-INSSST-QSTLSSGS----FFSIINILMQLRKVCNHP 1067
Score = 107 (42.7 bits), Expect = 1.2e-37, Sum P(5) = 1.2e-37
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL 434
++ N P +L PL +Q I L W+V +L+ GILAD+ GLGKTI TI+L
Sbjct: 764 LNTSNVRTKVPF-LLKFPLREYQHIGLDWLVSLYEKNLN---GILADEMGLGKTIMTISL 819
Query: 435 I 435
I
Sbjct: 820 I 820
Score = 75 (31.5 bits), Expect = 1.2e-37, Sum P(5) = 1.2e-37
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-----CELAKFDVVITTYSI 561
L+V P+SVL W E+ K G L + YHG+SR + + F V IT+YS+
Sbjct: 834 LIVVPSSVLFNW--EMEFKRWCPG-LKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSM 890
Query: 562 V 562
V
Sbjct: 891 V 891
Score = 47 (21.6 bits), Expect = 1.5e-31, Sum P(5) = 1.5e-31
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 443 FRTEDDNKRQL--ETLNLDEEDNGIQVNG---LDLVKQESD 478
F T D++ L + +N +E+D+G Q+ L+ +K ES+
Sbjct: 657 FNTSDESSCDLSDDNINEEEDDDGEQLESKEYLEELKLESE 697
Score = 43 (20.2 bits), Expect = 3.7e-32, Sum P(4) = 3.7e-32
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 447 DDNKRQ--LETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVE 496
DD K+Q L LNLD++ + +NG K E ++C NG S S F++
Sbjct: 197 DDIKQQQQLSLLNLDQDKLQL-ING----KVE-EFCN--SNGFSFYSQIFID 240
Score = 39 (18.8 bits), Expect = 1.2e-13, Sum P(5) = 1.2e-13
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 951 NTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDN 983
N N++ +++ GS+ D+N+L+ + N
Sbjct: 1869 NNNNNNNNNNNYGGSLTNQYDNNNLNNNNNNKN 1901
Score = 38 (18.4 bits), Expect = 1.2e-37, Sum P(5) = 1.2e-37
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 153 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQN 183
N + CNS F Q FI SL S++
Sbjct: 219 NGKVEEFCNSNGFSFYSQIFIDNLSSLTSKS 249
Score = 37 (18.1 bits), Expect = 1.5e-37, Sum P(5) = 1.5e-37
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 146 IDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESK 200
+DE G Y+D N+ S ++ + + +KE E+L LES+
Sbjct: 644 VDED-GNEIEYNDDFNTSDESSCDLSDDNINEEEDDDGEQLESKEYLEELKLESE 697
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 255 (94.8 bits), Expect = 1.6e-37, Sum P(5) = 1.6e-37
Identities = 55/141 (39%), Positives = 86/141 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1044 DKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1101
++A++ FN +P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHRIG
Sbjct: 545 EEAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 603
Query: 1102 QTRPVSVLRLTVKNTVEDRIL 1122
Q +PV V RL NTVE+RI+
Sbjct: 604 QKKPVRVFRLITDNTVEERIV 624
Score = 195 (73.7 bits), Expect = 1.6e-37, Sum P(5) = 1.6e-37
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 1.6e-37, Sum P(5) = 1.6e-37
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.6e-37, Sum P(5) = 1.6e-37
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 562 VSME 565
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 1.3e-15, Sum P(5) = 1.3e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 862 ANEKYGRDDIDNIAREVE 879
Score = 38 (18.4 bits), Expect = 1.6e-37, Sum P(5) = 1.6e-37
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 257 (95.5 bits), Expect = 2.9e-37, Sum P(5) = 2.9e-37
Identities = 73/226 (32%), Positives = 117/226 (51%)
Query: 931 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 990
NSS + +L L + R NH + F+G+ P + D H + + +
Sbjct: 443 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVGNSGKM 492
Query: 991 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDF 1050
+A + IK G + ++FSQ T++LD+LE +Y RLDG R++A+ F
Sbjct: 493 VALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAF 552
Query: 1051 NTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1108
N P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ +PV V
Sbjct: 553 NA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRV 611
Query: 1109 LRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1153
RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 612 FRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 657
Score = 192 (72.6 bits), Expect = 2.9e-37, Sum P(5) = 2.9e-37
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 306 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 365
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 366 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 420
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 421 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 472
Score = 91 (37.1 bits), Expect = 2.9e-37, Sum P(5) = 2.9e-37
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 178 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 226
Score = 58 (25.5 bits), Expect = 2.9e-37, Sum P(5) = 2.9e-37
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G + D ++DV +T+Y +
Sbjct: 240 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 296
Query: 562 VSME 565
V E
Sbjct: 297 VIKE 300
Score = 42 (19.8 bits), Expect = 4.0e-15, Sum P(5) = 4.0e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 863 ANEKYGRDDIDNIAREVE 880
Score = 37 (18.1 bits), Expect = 2.9e-37, Sum P(5) = 2.9e-37
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 141 SLISVGDYRHRRTEQEEDEELLSESRK 167
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 219 (82.2 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 56/165 (33%), Positives = 86/165 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR----LDGTMSVFARDKAVKDFNT 1052
++ I G++ + F+Q+T+ +LL L + R L G RD+ V F +
Sbjct: 842 LEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 901
Query: 1053 LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1112
+ ++SLKA GLN+ AA HV+ LD WWNP E+QA DRA RIGQ R V V +
Sbjct: 902 GDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRRTVQVRKFI 961
Query: 1113 VKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
T+E++I + ++K+ + + E G T L+ DL +F
Sbjct: 962 CTGTLEEKIDEMIEEKKALADLVVTDGE--GWLTELSTRDLREVF 1004
Score = 205 (77.2 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 53/175 (30%), Positives = 93/175 (53%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
LA+ W RVVLDEAQ++KN ++ A+A LRA R L+GTP++N + +L+S FL
Sbjct: 651 LAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSIMDFLNP 710
Query: 688 DPFAVYKSFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
+ F + +PI ++ + ++L+A + +LRR K D I +LP K+ +
Sbjct: 711 GLLGSSERFRTRYAIPIERHGHTEPAERLRASTRPYILRRLK---TDPAIIDDLPEKIEI 767
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
+ T E+ Y + + ++ + G ++ N+L + +L+Q C+HP
Sbjct: 768 KQYCQLTTEQASLYQAVVADMMEKIEN--TEGIERRG--NVLAAMAKLKQVCNHP 818
Score = 83 (34.3 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL 434
PDG A L +Q+ L+W+ + L G LADD GLGKT+ +AL
Sbjct: 526 PDGFTAT-LRPYQQRGLAWLAFLSSLGL---GSCLADDMGLGKTVQLLAL 571
Score = 81 (33.6 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 495 VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---ELAK 551
V++ + R TL++CP S++ W +E + L V +HG +R L +
Sbjct: 577 VQRHQDRGVGPTLLLCPMSLVGNWPQEAARFAPN---LRVYAHHGGARLHGEALRDHLER 633
Query: 552 FDVVITTYSIVSMEV 566
D+V++TY+ + ++
Sbjct: 634 TDLVVSTYTTATRDI 648
Score = 41 (19.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 15/44 (34%), Positives = 16/44 (36%)
Query: 911 PTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVT 954
P D V A +G W AA LQ L P G T T
Sbjct: 490 PDDVDTPLEVTAVRADG-WLGDLLAGAAAASLQPLDPPDGFTAT 532
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 304 (112.1 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 64/168 (38%), Positives = 99/168 (58%)
Query: 965 SICCP-GDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEAS 1023
++C P G + + D I+D + + +K G + +++SQ TKM+DLLE
Sbjct: 1132 ALCKPHGGWSSIVVPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEY 1191
Query: 1024 LKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083
+ +Y RLDG+ + AR V DF T ++ V ++S +A LG+N+ AA V+ D
Sbjct: 1192 MWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDS 1251
Query: 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
WNPT + QA+DRAHR+GQT+ V+V RL K T+E+RIL ++K E+
Sbjct: 1252 DWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 1299
Score = 159 (61.0 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 51/193 (26%), Positives = 93/193 (48%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
++ W +VLDEAQ+IK+ +Q + G + R LSGTPIQN++ +L++ F+
Sbjct: 660 RIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTL 719
Query: 690 FAVYKSFCSMIKVPI---SKNPV----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F + F I ++N K +L +LK MLRR K + + E L
Sbjct: 720 FDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDV-ENE----LSD 774
Query: 743 KVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV----KQNYVNILLMLLRLRQAC 798
K+ ++ T ++ Y L+ R + + +G+ + N++ ++++ R+ C
Sbjct: 775 KIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVC 834
Query: 799 DHPLLVKGFDSNS 811
+HP L + D+ S
Sbjct: 835 NHPELFERRDARS 847
Score = 74 (31.1 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 358 KSKASDERLILQVAMQGIS-QPNAEAS-APDGVLAVPLLRHQRI-ALSWMVQKETSSLHC 414
K K +E Q +++ I +P E P + L+ +I ++W+ +
Sbjct: 497 KKKEKEEEEQAQESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGI-- 554
Query: 415 SGGILADDQGLGKTISTIALI 435
GILAD+ GLGKT+ +IA +
Sbjct: 555 -SGILADEMGLGKTVQSIAFL 574
Score = 57 (25.1 bits), Expect = 1.1e-36, Sum P(4) = 1.1e-36
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-------DPCEL----AKFDVV 555
LV+ P S L W +E+ V V+ Y GS + D L A F VV
Sbjct: 588 LVISPASTLHNWQQEMSRFVPD---FKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVV 644
Query: 556 ITTYSIV 562
IT+Y +V
Sbjct: 645 ITSYQLV 651
Score = 46 (21.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 772 KEYAAAGTVKQN-YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMY 830
KE +K N + +L R+ C + + +S +++ +V AK+L +E Y
Sbjct: 320 KESGRLQRIKSNNHKEMLANCKRVAGMCAKVVRQRAINSQRIMKETVWRAKRLTREMLAY 379
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 272 (100.8 bits), Expect = 1.8e-36, Sum P(4) = 1.8e-36
Identities = 64/169 (37%), Positives = 93/169 (55%)
Query: 981 LDNISDENEKIAAKC-SIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1039
++N E+ K+ +I + + G++ ++FSQ+T ML ++ L++ +DG
Sbjct: 889 VENYQGESGKLLQLFDTIQTARENGKRILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTP 948
Query: 1040 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1099
R V FN E + ++SLKA GLN+V A V+L DLWWNP E+QA RAHR
Sbjct: 949 SKTRLDMVNAFNE-GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHR 1007
Query: 1100 IGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQT 1146
IGQ R V V R+ K T+E+RI LQ+KK+ +V GE G T
Sbjct: 1008 IGQKRVVQVFRMITKGTIEERIFDLQKKKQALVDELIQPGEQMLGKLST 1056
Score = 143 (55.4 bits), Expect = 1.8e-36, Sum P(4) = 1.8e-36
Identities = 41/139 (29%), Positives = 73/139 (52%)
Query: 622 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 681
DIV A V + V++DE+Q+IKN+ T+ ++A L+ + LSGTP++N+ID+L++
Sbjct: 726 DIVH--FADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAI 783
Query: 682 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 741
F+ L F + F ++P Y + +++ +LRR K ++ LP
Sbjct: 784 FQTLMPGFFPSLRKFK---EIP--------YDNIAKMIRPFLLRRLKQDVVK-----ELP 827
Query: 742 PKVIMLKQVDFTDEERDFY 760
K+ + TDE++ Y
Sbjct: 828 DKIETNLYSELTDEQKTIY 846
Score = 111 (44.1 bits), Expect = 1.8e-36, Sum P(4) = 1.8e-36
Identities = 67/263 (25%), Positives = 107/263 (40%)
Query: 188 AKEEHEDLILES--KRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQY-FPYAQ-PSTLN 243
++EE+E +++ K AR I S+ G + +N Y F Y P
Sbjct: 409 SEEENEKIMIRDVEKEARVMNII---ESAPVHFSGTKMVVNKQEKDLYQFYYRTIPKLAE 465
Query: 244 KKEL---DGVKEDMEAEIKTRSMASHLLKLSPES-IQSNSSDCKSHVDDEPDICILEDIS 299
E+ DG++E +E + R + + L +S ++ S S D K ++E +LE +
Sbjct: 466 YAEIYMEDGLEEMVEENV--RPVTT--LDVSGDNDYLSVSFDFKGIPEEEVQN-VLESLR 520
Query: 300 QPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQH-SSYSDYPGYPGVPL---TGLG 355
+ RS L G+ LS+ L V + + P Y G+ + G G
Sbjct: 521 EK-RSYHRLKSGRFLSLESENYKQMEDVLQMLEVRKKDVQANMQVPLYRGMQIYDILGAG 579
Query: 356 GMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCS 415
R ++ +Q + P G+ A L +Q WM +L
Sbjct: 580 AQDEHHKFSRSFRELLTDITTQSEDSFALPKGLKA-ELRDYQLTGFEWMKSLAKYNL--- 635
Query: 416 GGILADDQGLGKTISTIALILKE 438
GGILADD GLGKT+ TI+ + E
Sbjct: 636 GGILADDMGLGKTVQTISFLASE 658
Score = 85 (35.0 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 30/116 (25%), Positives = 55/116 (47%)
Query: 712 YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF 771
Y + +++ +LRR K ++ LP K+ + TDE++ Y L + Q
Sbjct: 803 YDNIAKMIRPFLLRRLKQDVVK-----ELPDKIETNLYSELTDEQKTIY--LAYLEKIQA 855
Query: 772 KEYAAAGTVKQNYVNILLMLLRLRQ-ACDHPLLVKGF--DSNSLLR--SSVEMAKK 822
A+ G + + +L L RLRQ CD L V+ + +S LL+ +++ A++
Sbjct: 856 DLEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQLFDTIQTARE 911
Score = 58 (25.5 bits), Expect = 1.8e-36, Sum P(4) = 1.8e-36
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 486 GSSAKSFNFV-EQAKGRP-AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--S 541
G + ++ +F+ + + P L++ P S+L W EL + + V V HG+ S
Sbjct: 646 GKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPA---IPVTVLHGTKQS 702
Query: 542 RTKDPCELAKFDVVITTYSIVSMEV 566
R + E+ V + +Y + ++
Sbjct: 703 RIAEMEEMKHGHVYLISYPSLRQDI 727
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 237 (88.5 bits), Expect = 2.9e-36, Sum P(4) = 2.9e-36
Identities = 49/156 (31%), Positives = 94/156 (60%)
Query: 980 TLDNISDENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTM 1038
T +++ D + K+A + +K G + ++FSQ ++MLD+LE + +Y R+DG+
Sbjct: 572 TGEHLIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGST 631
Query: 1039 SVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1097
R+ +++++N ++ +++ +A LG+ + A V+L D WNP + QA DRA
Sbjct: 632 ESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRA 691
Query: 1098 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
HRIGQT+PV+V R +N++E++++ + K ++ A
Sbjct: 692 HRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDA 727
Score = 178 (67.7 bits), Expect = 2.9e-36, Sum P(4) = 2.9e-36
Identities = 51/178 (28%), Positives = 89/178 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +++DEA IKN + +++ ++ R ++GTP+QN + +L+S FL D
Sbjct: 395 KFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDV 454
Query: 690 FAVYKSFCSMIKVPIS-KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 748
F+ F + + +N + KL VL+ +LRR K T ++ +LPPK +
Sbjct: 455 FSSSDDFDKWFDLANNTENQQEVIDKLHKVLRPFLLRRIK-TEVEK----SLPPKKEIKL 509
Query: 749 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + ++++Y +L D A T + +NI + +LR+AC+HP L G
Sbjct: 510 FVGLSTMQKEWYKRLLSKDLDAVVVGAKGNTGRVRLLNICM---QLRKACNHPYLFDG 564
Score = 95 (38.5 bits), Expect = 2.9e-36, Sum P(4) = 2.9e-36
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 352 TGLGGMKSKASDERLILQVAMQGISQP---NAEASAPDGVLAVPLLRHQRIALSWMVQKE 408
T G + +A DE I+ M+ +P N S+P + + + +Q L+W++Q
Sbjct: 234 TKRGHITEEAEDEA-IMNETMEE-EEPHSFNFFTSSPPYIKSGTMRDYQVYGLNWLIQLY 291
Query: 409 TSSLHCSGGILADDQGLGKTISTIALI 435
++ GILAD+ GLGKT+ TI+L+
Sbjct: 292 ERGIN---GILADEMGLGKTLQTISLL 315
Score = 77 (32.2 bits), Expect = 2.9e-36, Sum P(4) = 2.9e-36
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-----LAKFDVVITTYSI 561
L++ P S L WA+E L V+ +HGS ++ + KFDV ITTY +
Sbjct: 329 LIIAPKSTLSGWAKEFTRWCPF---LRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEV 385
Query: 562 VSME 565
E
Sbjct: 386 AIRE 389
Score = 41 (19.5 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKE 773
LKQ+ +++R +LE N R Q +E
Sbjct: 141 LKQI--REQQRKQLQELEKNQRQQLQE 165
Score = 39 (18.8 bits), Expect = 1.6e-30, Sum P(4) = 1.6e-30
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 409 TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 468
T++ S + + + TIS+ + P S +++N+ E + +E D+ + N
Sbjct: 32 TTTTSSSSSSVGNKRNESPTISSSG---NQSPKSMENDNENEED-EVMEEEEVDDN-EEN 86
Query: 469 GLD 471
G D
Sbjct: 87 GND 89
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 286 (105.7 bits), Expect = 3.4e-36, Sum P(4) = 3.4e-36
Identities = 58/140 (41%), Positives = 91/140 (65%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF P++ V
Sbjct: 1333 LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVF 1392
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL ++T+E+
Sbjct: 1393 LLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRSTIEE 1452
Query: 1120 RIL--ALQQKKREMVASAFG 1137
RI ALQ+++ + V + G
Sbjct: 1453 RIRKRALQKEEVQRVVISGG 1472
Score = 161 (61.7 bits), Expect = 3.4e-36, Sum P(4) = 3.4e-36
Identities = 52/191 (27%), Positives = 89/191 (46%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
KV W ++LDEAQ+IK+ ++ ++ G + R L+GTPIQN + +L++ F+
Sbjct: 924 KVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTL 983
Query: 690 FAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F + F I + K +L +LK MLRR K + L
Sbjct: 984 FDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQ-----ELGD 1038
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 800
KV D T +R Y+ L ++ D E AA G + + ++ ++++ R+ C+H
Sbjct: 1039 KVEKDVFCDLTYRQRALYTNLRNRVSIMDLI-EKAAVGD-ETDSTTLMNLVMQFRKVCNH 1096
Query: 801 PLLVKGFDSNS 811
P L + ++ S
Sbjct: 1097 PDLFERAETKS 1107
Score = 83 (34.3 bits), Expect = 3.4e-36, Sum P(4) = 3.4e-36
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 381 EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
E S P +L L +Q L+W+V ++ GILAD+ GLGKTI +I+++
Sbjct: 787 EISQPT-MLTAKLKEYQLKGLNWLVNLYEQGIN---GILADEMGLGKTIQSISVM 837
Score = 60 (26.2 bits), Expect = 3.4e-36, Sum P(4) = 3.4e-36
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF-DVVITTYS 560
LV+ P S L W +E+ V + + VL Y G++ KD L KF D TY+
Sbjct: 851 LVIAPASTLHNWQQEITKFVPN---IKVLPYWGNA--KDRKILRKFWDRKHITYT 900
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 264 (98.0 bits), Expect = 3.8e-36, Sum P(6) = 3.8e-36
Identities = 57/137 (41%), Positives = 81/137 (59%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
+ ++F+Q +KMLD+L+ L QY RLDGT V R ++ FN P+V I+S ++
Sbjct: 1206 RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRS 1265
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+G+N+ A V+ D WNPT + QA DR HRIGQTR VS+ RL + T+E+ IL
Sbjct: 1266 GGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKA 1325
Query: 1126 QKKREMVASAFGEDETG 1142
+KR + A DE G
Sbjct: 1326 TQKRRLGELAI--DEAG 1340
Score = 183 (69.5 bits), Expect = 3.8e-36, Sum P(6) = 3.8e-36
Identities = 56/180 (31%), Positives = 93/180 (51%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEAQ+IKN ++Q +A +RA+RR L+GTP+QN++ +L+S FL F+
Sbjct: 680 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSS 739
Query: 693 YKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
+ F P++ P+ G +L VL+ +LRR K + E LP K
Sbjct: 740 HDDFKDWFSNPLTGMMEGNMEFNAPLIG--RLHKVLRPFILRRLKKEV---EK--QLPEK 792
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ + +R Y + SR KE +G N +++L ++++LR+ C+HP L
Sbjct: 793 TEHIVNCSLSKRQRYLYD--DFMSRRSTKENLKSG----NMMSVLNIVMQLRKCCNHPNL 846
Score = 97 (39.2 bits), Expect = 3.8e-36, Sum P(6) = 3.8e-36
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 357 MKSKASDERL--ILQVAMQGIS-QPNAEASAPDGVLA-VPLL------RHQRIALSWMVQ 406
+ S+ SDER + +A + + QP V VP L +Q + L WMV
Sbjct: 512 LNSQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPFLIRGQLREYQMVGLDWMVT 571
Query: 407 KETSSLHCSGGILADDQGLGKTISTIALI 435
+L+ GILAD+ GLGKTI TI+L+
Sbjct: 572 LYEKNLN---GILADEMGLGKTIQTISLL 597
Score = 67 (28.6 bits), Expect = 3.8e-36, Sum P(6) = 3.8e-36
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-------FDVVITTY 559
L+V PTSV+ W E + + L +L Y G++ K+ E K F V IT+Y
Sbjct: 611 LIVVPTSVILNWEMEFKKWCPA---LKILTYFGTA--KERAEKRKGWMKPNCFHVCITSY 665
Query: 560 SIVSMEV 566
V+ ++
Sbjct: 666 KTVTQDI 672
Score = 57 (25.1 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 78 QCEDSKNGLPIY-GNSLSNITL 98
QC S +GLP Y N+LSNI L
Sbjct: 1131 QCRPSSSGLPSYIRNNLSNIEL 1152
Score = 45 (20.9 bits), Expect = 2.4e-14, Sum P(5) = 2.4e-14
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 910 IPTDYSDSKLVEAPSCEGVWYNSSKI 935
I D SDS L+ PS +Y SS +
Sbjct: 1483 IDLDDSDSLLLNDPSTSADFYQSSSL 1508
Score = 42 (19.8 bits), Expect = 1.4e-30, Sum P(6) = 1.4e-30
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 445 TEDDNKRQLETLNLDEEDNGIQVNGLDL 472
++D ++RQ E N+ EE Q G L
Sbjct: 514 SQDSDERQQELANIAEEALKFQPKGYTL 541
Score = 41 (19.5 bits), Expect = 3.8e-36, Sum P(6) = 3.8e-36
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 236 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICIL 295
Y + L +++L+ +K + E K R A + E +S SSD + D+
Sbjct: 427 YLKAYGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSDLTA- 485
Query: 296 EDISQP 301
E + P
Sbjct: 486 EQLQDP 491
Score = 40 (19.1 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 331 PVVTSQHSSYSDYPGYPGVPLTGL--GGMKSKA 361
P + S H + D+ + PLTG+ G M+ A
Sbjct: 734 PTIFSSHDDFKDW--FSN-PLTGMMEGNMEFNA 763
Score = 39 (18.8 bits), Expect = 3.8e-36, Sum P(6) = 3.8e-36
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 868 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEG 927
E + D QC + + + + S LN+ T S S+ ++ P
Sbjct: 1123 EPVLTDAWQCRPSSSGLPSYIRNNLSNIELNSRSLLLNTSTNFDTRMSISRALQFPELRL 1182
Query: 928 VWYNSSKIKAALEVLQSL 945
+ Y+ K++ +L+ L
Sbjct: 1183 IEYDCGKLQTLAVLLRQL 1200
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 278 (102.9 bits), Expect = 4.7e-36, Sum P(4) = 4.7e-36
Identities = 55/130 (42%), Positives = 82/130 (63%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K GG +A++F+Q TKMLD+LEA + Y RLDG+ R ++ FNT P++ +
Sbjct: 1087 LKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLF 1146
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ +G+N+V A V+ D WNP + QA DR HRIGQTR V + RL ++T+E+
Sbjct: 1147 ILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEE 1206
Query: 1120 RILALQQKKR 1129
IL +KR
Sbjct: 1207 NILKKANQKR 1216
Score = 154 (59.3 bits), Expect = 4.7e-36, Sum P(4) = 4.7e-36
Identities = 52/182 (28%), Positives = 87/182 (47%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEA IKN ++Q + +KRR L+GTP+QN + +L+S FL F
Sbjct: 658 WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQS 717
Query: 693 YKSFCSMIKVPISKNPVKGYKK--------LQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
++ F PI+ V+G +K L VL+ +LRR K D E LP K
Sbjct: 718 HQEFKDWFCNPIA-GMVEGQEKINKEVIDRLHNVLRPFLLRRLKR---DVEK--QLPSKH 771
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
+ + +R+ Y ++ Q A ++ ++ ++++LR+ C+HP L
Sbjct: 772 EHVIFCRLSKRQRNLYEDFIASTETQ------ATLTSGSFFGMISIIMQLRKVCNHPDLF 825
Query: 805 KG 806
+G
Sbjct: 826 EG 827
Score = 95 (38.5 bits), Expect = 4.7e-36, Sum P(4) = 4.7e-36
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q I L W+V L+ GILAD+ GLGKTI TIAL+
Sbjct: 536 LREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIMTIALL 575
Score = 67 (28.6 bits), Expect = 4.7e-36, Sum P(4) = 4.7e-36
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-----CELAKFDVVITTYSI 561
L+V PTSV+ W E + +L Y GS++ + +L F V ITTY +
Sbjct: 589 LIVVPTSVMLNWETEFLKWCPA---FKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRL 645
Query: 562 V 562
V
Sbjct: 646 V 646
Score = 45 (20.9 bits), Expect = 7.0e-12, Sum P(4) = 7.0e-12
Identities = 24/86 (27%), Positives = 37/86 (43%)
Query: 978 GDTLDNISD-ENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG 1036
G D I D + EK + K + K I + Q + +LD LE S S+ +D
Sbjct: 1569 GKKRDLIVDTDEEKTSKKKAKKHKKSLPNSDIKYKQTSALLDELEPSKPSDSMV---VDN 1625
Query: 1037 TMSVFARDKAV-KDFNTLPEVSVMIM 1061
+ + R K V K F T + ++M
Sbjct: 1626 ELKLTNRGKTVGKKFITSMPIKRVLM 1651
Score = 37 (18.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 318 RSACSNHSVALGKPVVTS 335
R C++ + G+P+V+S
Sbjct: 816 RKVCNHPDLFEGRPIVSS 833
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 294 (108.6 bits), Expect = 5.7e-36, Sum P(4) = 5.7e-36
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 980 TLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1037
++D E+ K+A + ID +K GG + +++ Q T+M+ + E L S +Y RLDG+
Sbjct: 1227 SMDRFIAESGKLAKLDELLID-LKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGS 1285
Query: 1038 MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1097
++ +R + V+ + T PE+ + ++S +A LGLN+ +A V+ D WNPT + QA+DRA
Sbjct: 1286 TTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRA 1345
Query: 1098 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
HRIGQT+ V V RL +NT+E +IL ++K E+
Sbjct: 1346 HRIGQTKQVKVFRLVTRNTIEQKILERAKEKEEI 1379
Score = 161 (61.7 bits), Expect = 5.7e-36, Sum P(4) = 5.7e-36
Identities = 53/192 (27%), Positives = 88/192 (45%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K+ W ++LDEAQ+IK+ + ++ L + R L+GTPIQN++ +L++ F+
Sbjct: 798 KMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSI 857
Query: 690 FAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F + F I + ++L +LK MLRR K + L
Sbjct: 858 FDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKPFMLRRIKKNVQS-----ELGD 912
Query: 743 KVIMLKQVDFTDEERDFYSQL--EINSRD-QFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
KV + D T ++ Y QL +I+ D E + T + + L+M + R+ C+
Sbjct: 913 KVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLANLVM--QFRKVCN 970
Query: 800 HPLLVKGFDSNS 811
HP L + D NS
Sbjct: 971 HPDLFERADVNS 982
Score = 76 (31.8 bits), Expect = 3.0e-27, Sum P(4) = 3.0e-27
Identities = 55/208 (26%), Positives = 83/208 (39%)
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL---MLLRLRQAC--DHP 801
L+ ++ + E YSQ +I SR + T K +N L + + ++ DH
Sbjct: 1055 LQGINVSPNELKHYSQKDILSRAIEMQNKPTETEKLERINYLYEGDYIPKNKKLLITDHS 1114
Query: 802 LLVKG-FDSNSLLRSS-VEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGH 859
F SNSL+ S V + +K+ Q+ MYL N LE A+ I + PP V+
Sbjct: 1115 TSTNSSFISNSLVFSDLVSIKEKVSQD--MYL-NKLEP--AVTPIASAPP--ITVNCSSM 1167
Query: 860 VFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL 919
F N+ D N R+ I LSLS+ L Q +P D
Sbjct: 1168 NFTNKM--NNTLFDSN---IRSSLIPLSLSTELKLMKDQIPLEQYPKSNMLPMPIFDYSN 1222
Query: 920 VEAPSCEGVWYNSSKIKAALEVLQSLAK 947
+ PS + S K+ E+L L +
Sbjct: 1223 IRMPSMDRFIAESGKLAKLDELLIDLKR 1250
Score = 73 (30.8 bits), Expect = 5.7e-36, Sum P(4) = 5.7e-36
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+L L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 667 MLKCTLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVL 711
Score = 56 (24.8 bits), Expect = 5.7e-36, Sum P(4) = 5.7e-36
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 552
LVV P S L W +E+ V VL Y G++ KD L KF
Sbjct: 725 LVVTPASTLHNWQQEITKFVPE---FKVLPYWGNA--KDRKILRKF 765
Score = 37 (18.1 bits), Expect = 2.9e-23, Sum P(4) = 2.9e-23
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 758 DFYSQLEINSRDQFKEYAAAGT 779
D + + ++NS F ++A G+
Sbjct: 973 DLFERADVNSPFSFGKFAETGS 994
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 293 (108.2 bits), Expect = 6.6e-36, Sum P(4) = 6.6e-36
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1094 ITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1153
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF T ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1154 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1213
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1214 KQVTVYRLICKGTIEERILQRAKEKSEI 1241
Score = 151 (58.2 bits), Expect = 6.6e-36, Sum P(4) = 6.6e-36
Identities = 54/217 (24%), Positives = 104/217 (47%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 639 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 698
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 699 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 753
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 799
K+ +L T ++ Y L+ I+ D + + QN + L+ ++++ R+ C+
Sbjct: 754 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCN 813
Query: 800 HPLLVKGFDSNSLLRSSV---EMAKKLPQERQMYLLN 833
HP L + ++ S S+ E++K + + Q+ + N
Sbjct: 814 HPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFN 850
Score = 75 (31.5 bits), Expect = 6.6e-36, Sum P(4) = 6.6e-36
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 439
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 523 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 565
Score = 67 (28.6 bits), Expect = 6.6e-36, Sum P(4) = 6.6e-36
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRTKDPC---ELAKFDVVITTYSI 561
L++ P S L W +E V VL Y G+ R K + A F VVIT+Y +
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQL 629
Query: 562 VSMEV 566
V +V
Sbjct: 630 VVQDV 634
Score = 42 (19.8 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSL 945
E+ S +G YN SK+K + + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRKWLKSI 129
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 242 (90.2 bits), Expect = 7.7e-36, Sum P(4) = 7.7e-36
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2066 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2125
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2126 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2185
Query: 1120 RILALQQKKR 1129
IL +KR
Sbjct: 2186 NILKKANQKR 2195
Score = 180 (68.4 bits), Expect = 7.7e-36, Sum P(4) = 7.7e-36
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 748 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 807
Query: 693 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 808 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 861
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 862 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 914
Score = 116 (45.9 bits), Expect = 7.7e-36, Sum P(4) = 7.7e-36
Identities = 52/201 (25%), Positives = 88/201 (43%)
Query: 243 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 302
++ E++ D E E T + + S QS+S++ +S +DE + E+ S+ +
Sbjct: 472 DEDEVEANSSDCEPEGATEAEEA---PQEDSSSQSDSAEEQSEDEDE-EHSEEEETSESS 527
Query: 303 RSNQSLVLGKTLSMNRSACSNHSVA---LGKPVVTSQHSSYSDYPGYPGVPLTGLG---G 356
S +S S ++S G + ++ S+ G G P G G
Sbjct: 528 ESEESESEESEESQSQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSGPPTPGPTTTLG 587
Query: 357 MKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLHC 414
K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 588 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN- 646
Query: 415 SGGILADDQGLGKTISTIALI 435
GILAD+ GLGKTI TI+L+
Sbjct: 647 --GILADEMGLGKTIQTISLL 665
Score = 64 (27.6 bits), Expect = 7.7e-36, Sum P(4) = 7.7e-36
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 679 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 735
Query: 562 V 562
V
Sbjct: 736 V 736
Score = 44 (20.5 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 901 LSQRQPGQEIPTDYSDSKLVEAP 923
LS G+E+PT S+S +E P
Sbjct: 2644 LSVLPDGEEMPTCLSESNRLELP 2666
Score = 43 (20.2 bits), Expect = 2.4e-28, Sum P(4) = 2.4e-28
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 137 STVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLI 196
S+ SDS E +++ + + + + +S +S S SQ+Q +EE +D
Sbjct: 500 SSQSDSAE--EQSEDEDEEHSEEEETSESSESEESESEESEESQSQSQADEEEEEDDDFG 557
Query: 197 LESKRARFCQEI-CDGSSSRSPIDG 220
+E AR ++ DG S P G
Sbjct: 558 VEYLLARDEEQSEADGGSG-PPTPG 581
Score = 38 (18.4 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 264 ASHLLKLSPESIQSNSSDCKSHV 286
A+ L L+P S QS +S S V
Sbjct: 1813 AAQTLALAPASTQSPASQASSLV 1835
Score = 37 (18.1 bits), Expect = 9.8e-28, Sum P(4) = 9.8e-28
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 26 SEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPG 60
S+ A + ++E+ +F E + A GG G
Sbjct: 542 SQSQADEEEEEDDDFGVEYLLARDEEQSEADGGSG 576
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 248 (92.4 bits), Expect = 8.6e-36, Sum P(5) = 8.6e-36
Identities = 60/175 (34%), Positives = 98/175 (56%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 495 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 554
Query: 1044 DK--AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1099
+K A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DRAHR
Sbjct: 555 EKKEAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHR 613
Query: 1100 IGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1153
IGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 614 IGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 668
Score = 187 (70.9 bits), Expect = 8.6e-36, Sum P(5) = 8.6e-36
Identities = 54/178 (30%), Positives = 92/178 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 314 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 373
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 374 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKVY 428
Query: 750 VDFTDEERDF-YSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++ Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 429 LGLSKMQREWWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 481
Score = 91 (37.1 bits), Expect = 8.6e-36, Sum P(5) = 8.6e-36
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 186 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 234
Score = 57 (25.1 bits), Expect = 8.6e-36, Sum P(5) = 8.6e-36
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 248 MVLVPKSTLYNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 304
Query: 562 VSME 565
V E
Sbjct: 305 VIKE 308
Score = 42 (19.8 bits), Expect = 1.2e-14, Sum P(5) = 1.2e-14
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 39 (18.8 bits), Expect = 8.6e-36, Sum P(5) = 8.6e-36
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 166 KDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKR 201
KD QS I +++ +EE E+L+ ES++
Sbjct: 141 KDDKQSLISAGEYFSYRHRRTE-QEEDEELLSESRK 175
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 300 (110.7 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 64/162 (39%), Positives = 97/162 (59%)
Query: 979 DTLDNISDENEKIAAKCS-----IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
DT +SD++ ++AKC + S+K G + ++FSQWT MLD+LE +L + YRR
Sbjct: 574 DTKGTLSDKHVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRR 633
Query: 1034 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1093
LDG+ V R V FN + ++S +A GLN+ A V++ D+ +NP + QA
Sbjct: 634 LDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQA 693
Query: 1094 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1135
DR HRIGQT+PV++ RL K+TV++ I + KR++V A
Sbjct: 694 EDRCHRIGQTKPVTIFRLVTKSTVDENIYEIA--KRKLVLDA 733
Score = 110 (43.8 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 46/205 (22%), Positives = 95/205 (46%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690
W V++DEA ++K+ + + + A +R L+GTP+QN + +L+S F+ D F
Sbjct: 347 WSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIF 406
Query: 691 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
+K ++ + +++++L +LRR K ++ L PK+ ++ V
Sbjct: 407 TTENVD---LKKLLNAEDTELITRMKSILGPFILRRLKSDVMQ-----QLVPKIQRVEYV 458
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVK--QNYVNILLMLL----------RLRQAC 798
++ D Y + + ++++ + A VK +N L L + R+
Sbjct: 459 LMERKQEDAYKE----AIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIA 514
Query: 799 DHPLLVKGFDSNSLLRSSVEMAKKL 823
+HPLL++ S+ + +A+KL
Sbjct: 515 NHPLLIRRIYSDE---DVIRIARKL 536
Score = 89 (36.4 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR---TKDPCELAK------FDVVIT 557
LVVCP SVL W ELR S +VL YHG++R +++ L+K F+V++
Sbjct: 267 LVVCPASVLENWERELRKWCPS---FTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLV 323
Query: 558 TYSIVSMEVPKQ 569
YS+ +Q
Sbjct: 324 CYSLFERHSEQQ 335
Score = 65 (27.9 bits), Expect = 1.2e-35, Sum P(4) = 1.2e-35
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 392 PLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
P+L+ +Q + +++++ + G ILAD+ GLGKTI I +
Sbjct: 211 PILKPYQLVGVNFLLLLYKKGIE--GAILADEMGLGKTIQAITYL 253
Score = 37 (18.1 bits), Expect = 2.5e-23, Sum P(3) = 2.5e-23
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 659 RAKRRWCLSGTPIQ 672
R R+WC S T +Q
Sbjct: 280 RELRKWCPSFTVLQ 293
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 312 (114.9 bits), Expect = 1.3e-35, Sum P(5) = 1.3e-35
Identities = 75/241 (31%), Positives = 133/241 (55%)
Query: 913 DYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDS 972
D + LV+ + G+ N + K E L ++ P N + +L+ NG + G
Sbjct: 1692 DCKEISLVKL-TMNGLITNETT-KELSESLPTVLPPSSNQIVLDNLKE--NGGLM--GGL 1745
Query: 973 NDLHGGDTL------DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1026
N L G ++ +++D + + +K+GG + +++SQ+TKM+++LE +
Sbjct: 1746 NRLFGSTSIWMPSFSKSLNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIF 1805
Query: 1027 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086
+Y RLDG+ + R V DF + P + ++S +A +G+N+ +A V+ D WN
Sbjct: 1806 RKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWN 1865
Query: 1087 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM--VASAFGEDETGGQ 1144
PT ++QA DRAHR+GQTRPV+V RL KNT+E++IL ++K ++ + A G+ E+ +
Sbjct: 1866 PTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPE 1925
Query: 1145 Q 1145
+
Sbjct: 1926 E 1926
Score = 136 (52.9 bits), Expect = 1.3e-35, Sum P(5) = 1.3e-35
Identities = 47/191 (24%), Positives = 84/191 (43%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
++ W +VLDEA +IK+ + + + R L+GTPIQN++ +L++ F+
Sbjct: 1287 RLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFIMPTF 1346
Query: 690 FAVYKSFCSMIKVPISKNPV-KG------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F + F I + + +G +L +LK MLRR K + + E +P
Sbjct: 1347 FDSHDEFAEWFSKDIENHAMSQGGLNEHQLNRLHMILKPFMLRRIKRDV-ENE----MPS 1401
Query: 743 KVIMLKQVDFTDEERDFYSQLEINSRDQFKEY-AAAGTVKQNYVNILL-MLLRLRQACDH 800
K + + T ++ Y I S E A +Q + L+ +++ R+ C+H
Sbjct: 1402 KTEVEVYCNLTHRQKKLYQS--IRSNISITELLGGASFSEQGSMKALMNFVMQFRKVCNH 1459
Query: 801 PLLVKGFDSNS 811
P K + S
Sbjct: 1460 PETFKRSECES 1470
Score = 78 (32.5 bits), Expect = 1.3e-35, Sum P(5) = 1.3e-35
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+L L +Q ++W+V ++ GILAD+ GLGKTI +IA++
Sbjct: 1157 ILNADLKPYQLKGMTWIVNLYDQGIN---GILADEMGLGKTIQSIAVL 1201
Score = 57 (25.1 bits), Expect = 1.3e-35, Sum P(5) = 1.3e-35
Identities = 49/217 (22%), Positives = 82/217 (37%)
Query: 174 GLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQY 233
G SP + S N ++ +D S+ + S SRSP+ + ++N NG++Q
Sbjct: 58 GRSPVMYSPN-----RDSSDDDSSSSRSGLYLSSSSSRSRSRSPLPPLN-NIN-NGNQQS 110
Query: 234 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC 293
+ N + + + S S+ S SN S K+ ++ P+I
Sbjct: 111 NNFINNKN-NNNNFNNINNNYNNNNGINSSNSN-----NSSNSSNKS--KNSNNNIPNIL 162
Query: 294 --ILEDISQPARSNQSLVLGKTLSMNRSACSNH-SVALGKPVVTSQHSSYSDYPGYPGVP 350
I + S + S++ L S S+ SN S + + + SS S YP
Sbjct: 163 PYISLNGSGSSSSSKQFSLPPLKSTTTSSSSNSTSSSSSRSSKSHSSSSSSSSSSYPIKS 222
Query: 351 LTG-LGGMKSKASDERLILQVAMQGISQPNAEASAPD 386
+ G +GG SK S G S ++ D
Sbjct: 223 IFGNIGGGSSKGSSSSSSRSSKSSGSSSSRSDRDKSD 259
Score = 52 (23.4 bits), Expect = 1.3e-35, Sum P(5) = 1.3e-35
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-------DPCEL----AKFDVV 555
L+V P S L W E V + V+ Y G+ + + +P +L + F V+
Sbjct: 1215 LIVTPKSTLHNWKNEFAKFVPA---FKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVL 1271
Query: 556 ITTYSIV 562
IT+Y+++
Sbjct: 1272 ITSYNVI 1278
Score = 43 (20.2 bits), Expect = 1.1e-33, Sum P(6) = 1.1e-33
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 330 KPV-VTSQHSSYSDYPGYPGVPLTGLGGMK--SKASDERLILQVAMQGISQPNAEASAPD 386
KP+ TS H S S G P + L+ K S S + QG S + S+
Sbjct: 428 KPIGTTSPHLSSSSNQGLPPISLSSSSKHKLSSSLSSSSSLSSSTNQGAS---SAISSSI 484
Query: 387 GVLAVP 392
VL+ P
Sbjct: 485 SVLSSP 490
Score = 42 (19.8 bits), Expect = 4.5e-34, Sum P(5) = 4.5e-34
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 86 LPIYGNSLSNITLGDGKRSAQPCTYSHSHS 115
+P+ GNS +++G+ +R++ Y +S++
Sbjct: 586 MPLSGNSFEPLSIGN-QRNSTDNLYDNSNN 614
Score = 39 (18.8 bits), Expect = 1.1e-33, Sum P(6) = 1.1e-33
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 88 IYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGND 130
I+GN + G S++ S S SSR+ + +D +D
Sbjct: 223 IFGNIGGGSSKGSSSSSSRSSKSSGSSSSRSDRDKSDRDSRSD 265
Score = 37 (18.1 bits), Expect = 4.6e-33, Sum P(6) = 4.6e-33
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 242 LNKKELDGVKEDMEAEIKTRSMASHLLKLSP 272
LN+ E D D++ T +++SH+ K SP
Sbjct: 546 LNEHESDS---DVDFST-TPTLSSHISKYSP 572
Score = 37 (18.1 bits), Expect = 8.8e-22, Sum P(3) = 8.8e-22
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 889 SSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPS 924
SS S ++LNN+ + P S S PS
Sbjct: 378 SSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQPS 413
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 240 (89.5 bits), Expect = 3.6e-35, Sum P(4) = 3.6e-35
Identities = 48/140 (34%), Positives = 82/140 (58%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L ++ + Y RLDG++ R +AV FN P + V++++
Sbjct: 1738 RVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLT 1797
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V RL + +E++I+
Sbjct: 1798 THVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIM 1857
Query: 1123 ALQQKKREMVASAFGEDETG 1142
LQ+ K + ++ + G
Sbjct: 1858 GLQRFKMNVASTVVNQQNAG 1877
Score = 214 (80.4 bits), Expect = 3.6e-35, Sum P(4) = 3.6e-35
Identities = 68/196 (34%), Positives = 94/196 (47%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W VLDE IKN R ++ +A LR+ R LSGTPIQN + +L+S F FL
Sbjct: 1483 LVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMP 1542
Query: 688 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGE 735
K+F PI SK +G L+A+ K + MLRR K +L
Sbjct: 1543 GFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVL--- 1599
Query: 736 PIINLPPKVIMLKQVDFTDEER----DFYSQLEINSR---DQFKEYAAAGTVKQNYVNIL 788
+LPPK+I D +D +R DF SQL IN D+ ++ K +I
Sbjct: 1600 --ADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIF 1657
Query: 789 LMLLRLRQACDHPLLV 804
L +R+ C+HP L+
Sbjct: 1658 QALQYMRKLCNHPALI 1673
Score = 90 (36.7 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 32/109 (29%), Positives = 51/109 (46%)
Query: 461 EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPA-AGTLVVCPTSVLRQWA 519
E +GI + + L K C V + + + F E + A +L+VCP+++ W
Sbjct: 1376 ELHGILCDDMGLGKTLQTICIVASDHYNRQKL-FEESGSPKFAHVPSLIVCPSTLAGHWQ 1434
Query: 520 EELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVSMEV 566
+EL T L V Y G + R K ++ K DVV+T+Y I +V
Sbjct: 1435 QELS---TYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICRNDV 1480
Score = 89 (36.4 bits), Expect = 3.6e-35, Sum P(4) = 3.6e-35
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 364 ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQ 423
ER L+ Q ++ EA + ++ L ++Q+ ++W+ LH GIL DD
Sbjct: 1332 ERKFLE---QMLNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELH---GILCDDM 1385
Query: 424 GLGKTISTIALILKE 438
GLGKT+ TI ++ +
Sbjct: 1386 GLGKTLQTICIVASD 1400
Score = 45 (20.9 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSN 810
D T ++ + Y L DQF A ++NY N++ L +R C+ LL D
Sbjct: 847 DLTIQKDELYHLL----CDQF-----ATVPRENYANLVSQLHVVRAQCN-ALLNTFLDVG 896
Query: 811 SLLRSSV 817
L RS +
Sbjct: 897 RLSRSKI 903
Score = 43 (20.2 bits), Expect = 3.6e-35, Sum P(4) = 3.6e-35
Identities = 33/145 (22%), Positives = 58/145 (40%)
Query: 168 SGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNL 227
S QS + +S +L S ++V +K E E L S ++ + I D + L+ L
Sbjct: 113 SSQSQVVVSSNLTSNSEV--SKLEEERLSTRS-HSQEIKPIVDFGPDEET--AKELNTEL 167
Query: 228 NG-------SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSS 280
G S + F A KK L D + + + ++H L+ +++S
Sbjct: 168 KGKFENSLLSFESFDIANVLKAGKKLLGSASRDYD--VNPANYSTHYLQ-QLSNLKSRLD 224
Query: 281 DCKSHVDDEPDICILEDISQPARSN 305
++DD I+ D+ SN
Sbjct: 225 LAGEYLDDS----IMNDLGDNVGSN 245
Score = 39 (18.8 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 442 SFRTEDDNKRQLETLNLDEEDN 463
S T DDN Q+ +D+ D+
Sbjct: 1073 SIGTSDDNDEQVSGKLVDDSDD 1094
Score = 38 (18.4 bits), Expect = 5.6e-13, Sum P(3) = 5.6e-13
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 916 DSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDL 975
D+ L+ PS G Y S + + L+ R T H + GS C D L
Sbjct: 722 DTTLIVKPS--GQPYAPSTSRERNNNISELSNSR----TKHRAKDDPKGSFCFSVDEPML 775
Query: 976 HG 977
+G
Sbjct: 776 NG 777
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 242 (90.2 bits), Expect = 4.4e-35, Sum P(5) = 4.4e-35
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2043 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2102
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2103 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2162
Query: 1120 RILALQQKKR 1129
IL +KR
Sbjct: 2163 NILKKANQKR 2172
Score = 180 (68.4 bits), Expect = 4.4e-35, Sum P(5) = 4.4e-35
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 750 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 809
Query: 693 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 810 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 863
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 864 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 916
Score = 118 (46.6 bits), Expect = 4.4e-35, Sum P(5) = 4.4e-35
Identities = 52/206 (25%), Positives = 89/206 (43%)
Query: 243 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 302
+++E++ D E E +TR + + + E S S + H +DE D E++S +
Sbjct: 470 DEEEVEANSSDCELE-ETRDVE----EAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGSS 524
Query: 303 RSNQSLVLGKTLSMNRSACSNHSVA--------LGKPVVTSQHSSYSDYPGYPGVPLTGL 354
+S +S + ++S G + ++ S+ G G P G
Sbjct: 525 QSEESESDESEDAQSQSQADEEQEDEGDDDDDDFGVEYLLARDDERSEVDGGSGPPTPGP 584
Query: 355 G---GMKSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKET 409
G K + +D + + +G + + P +L LR +Q I L W+V
Sbjct: 585 TTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYE 644
Query: 410 SSLHCSGGILADDQGLGKTISTIALI 435
L+ GILAD+ GLGKTI TI+L+
Sbjct: 645 KKLN---GILADEMGLGKTIQTISLL 667
Score = 64 (27.6 bits), Expect = 4.4e-35, Sum P(5) = 4.4e-35
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 681 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 737
Query: 562 V 562
V
Sbjct: 738 V 738
Score = 39 (18.8 bits), Expect = 4.4e-35, Sum P(5) = 4.4e-35
Identities = 20/64 (31%), Positives = 24/64 (37%)
Query: 89 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFA-KDEGND-DLFPCWSTVSDSV 143
Y + LS N L K + PC S S +S V DE D D P D
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRLDDEAIDGDFQPQEEEEEDDE 302
Query: 144 EPID 147
E I+
Sbjct: 303 ETIE 306
Score = 38 (18.4 bits), Expect = 5.1e-19, Sum P(4) = 5.1e-19
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 500 GRPA-AGTLVVCPTSVL 515
G P + TLV PTSVL
Sbjct: 1631 GAPLPSSTLVSAPTSVL 1647
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 197 (74.4 bits), Expect = 5.8e-35, Sum P(5) = 5.8e-35
Identities = 47/127 (37%), Positives = 68/127 (53%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K +VFSQW +LD+L S + + I + R DG +++ +K F + V+ + ++
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGK----SKNTCLKRFKEERSLQVLTLHARS 1261
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
S GL + A HV + + N E QAI R HRIGQTRP V V++TVE IL L
Sbjct: 1262 QSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEGHILNLS 1321
Query: 1126 QKKREMV 1132
K E +
Sbjct: 1322 LTKHEQL 1328
Score = 181 (68.8 bits), Expect = 5.8e-35, Sum P(5) = 5.8e-35
Identities = 53/187 (28%), Positives = 92/187 (49%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL V W+R+ +DEAQ ++ ++ VA+ + + W +SGTP+++ +DDL+ LR
Sbjct: 415 PLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLR 474
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP--KV 744
Y P +YK M ++ I K V+ + L +++ R +K D E + LPP ++
Sbjct: 475 YSPMYLYKKQAWM-QI-IEKKRVREFCDL---FGSLVCRHSKQ---DVEEELKLPPQHRI 526
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
M ++ +E Y L + + + ++ L+RLRQAC HP +
Sbjct: 527 CMTTRLSVVEETN--YQDLLSEAAKSLHFFKDRNLDLCDEESMRRWLVRLRQACCHPQV- 583
Query: 805 KGFDSNS 811
GF + S
Sbjct: 584 -GFGNKS 589
Score = 94 (38.1 bits), Expect = 5.8e-35, Sum P(5) = 5.8e-35
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 825 QERQMYLLNCLE------ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 878
+ R+ YL N E S IC IC D + ++ CGH++C+ C+ E + CP
Sbjct: 1069 ESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCL-EAWLKHSSSCP 1127
Query: 879 TRNCKIRLSLSSVF 892
CK +L+ ++ +
Sbjct: 1128 M--CKTKLNKNNAY 1139
Score = 76 (31.8 bits), Expect = 5.8e-35, Sum P(5) = 5.8e-35
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTE 446
GGILAD+ G+GKT+ + L+L + P T+
Sbjct: 285 GGILADEMGMGKTLEVLGLVLHHQLPISLTD 315
Score = 76 (31.8 bits), Expect = 5.8e-35, Sum P(5) = 5.8e-35
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF----DVVITTYSI 561
TL++ P+++L QW E+ V S L V Y G R + + AK D+V+T+YS
Sbjct: 333 TLIITPSTILDQWLSEIDLHVPS---LKVFHYQGI-RKSNGLKSAKIFLDCDIVVTSYSD 388
Query: 562 VSMEV 566
+ E+
Sbjct: 389 LRFEL 393
Score = 40 (19.1 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 17/73 (23%), Positives = 36/73 (49%)
Query: 245 KELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSS--DCKSHVDDEPDICILEDISQPA 302
KEL+ KE + IK R HL+KL +S+ + + + ++ + +I D+ +
Sbjct: 782 KELNDQKEVL---IKFRDRLIHLMKLPLLDQESDPTGDEYEESLNAQSEISYCIDVYRQM 838
Query: 303 RSNQSLVLGKTLS 315
S++ + T++
Sbjct: 839 LSDRVAAVSGTIN 851
Score = 38 (18.4 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 70 IDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKR 103
I+Y ++ DS P+ SL+N D K+
Sbjct: 966 IEYYKQLQEISDSLMPPPVSNISLNNYVKDDEKK 999
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 242 (90.2 bits), Expect = 6.1e-35, Sum P(5) = 6.1e-35
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2055 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2114
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2115 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2174
Query: 1120 RILALQQKKR 1129
IL +KR
Sbjct: 2175 NILKKANQKR 2184
Score = 180 (68.4 bits), Expect = 6.1e-35, Sum P(5) = 6.1e-35
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 747 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 806
Query: 693 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 807 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 860
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 861 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 913
Score = 117 (46.2 bits), Expect = 6.1e-35, Sum P(5) = 6.1e-35
Identities = 54/200 (27%), Positives = 90/200 (45%)
Query: 244 KKELDGVKEDM-EAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA 302
++E D V+ D E+E + + A S QS+S++ +S D+E + E+ S+ +
Sbjct: 470 EEEEDEVEADSSESEPEGAAEAEEAPH-EDSSSQSDSAEEQSE-DEEDEHSEEEETSRSS 527
Query: 303 RSNQSLVLGKTLSMNRSACSNHSVA--LGKPVVTSQHSSYSDYPGYPGVPLTGLG---GM 357
S +S S ++S G + ++ S+ G G P G G
Sbjct: 528 ESEESESEESEESQSQSQADEEEEDDDFGVEYLLARDEERSEADGGSGPPTPGPTTTLGP 587
Query: 358 KSKASDERLILQ-VAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLHCS 415
K + +D + + +G + + P +L LR +Q I L W+V L+
Sbjct: 588 KKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLN-- 645
Query: 416 GGILADDQGLGKTISTIALI 435
GILAD+ GLGKTI TI+L+
Sbjct: 646 -GILADEMGLGKTIQTISLL 664
Score = 64 (27.6 bits), Expect = 6.1e-35, Sum P(5) = 6.1e-35
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 678 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 734
Query: 562 V 562
V
Sbjct: 735 V 735
Score = 41 (19.5 bits), Expect = 1.8e-14, Sum P(5) = 1.8e-14
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 901 LSQRQPGQEIPTDYSDSKLVEAP 923
LS G+E+P S+S +E P
Sbjct: 2634 LSVLPDGEEVPACLSESSKLELP 2656
Score = 39 (18.8 bits), Expect = 6.1e-35, Sum P(5) = 6.1e-35
Identities = 19/63 (30%), Positives = 23/63 (36%)
Query: 89 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKD-EGNDDLFPCWSTVSDSVE 144
Y + LS N L K + PC S S +S V D E D F D E
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRMDDEAIDGDFQPQEEEEDDEE 302
Query: 145 PID 147
I+
Sbjct: 303 TIE 305
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 229 (85.7 bits), Expect = 1.3e-34, Sum P(5) = 1.3e-34
Identities = 55/153 (35%), Positives = 88/153 (57%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT------ 1037
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1038 ----MSVFARDK--AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1089
+ ++ R + A++ FN +P S + ++S +A LG+N+ +A V+L D WNP
Sbjct: 545 ENGFLQIYFRRRREAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 603
Query: 1090 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+ QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 604 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 195 (73.7 bits), Expect = 1.3e-34, Sum P(5) = 1.3e-34
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 1.3e-34, Sum P(5) = 1.3e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.3e-34, Sum P(5) = 1.3e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 562 VSME 565
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 38 (18.4 bits), Expect = 1.3e-34, Sum P(5) = 1.3e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 335 (123.0 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 105/347 (30%), Positives = 161/347 (46%)
Query: 830 YLLNCLEASL-AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQ------CPTRNC 882
+L+ ++ S IC C D + V + CGH FC C + + DN CP C
Sbjct: 1301 HLIRHIDTSTDVICNSCKDIAVNPVKNHCGHDFCLDCFEDLVRNPDNNNNRVSLCP--EC 1358
Query: 883 KIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV- 941
L L + NN + G+ I K+ + + N SK L++
Sbjct: 1359 DSELILQDNTNGDDSNN----KNNGKSI------KKIANLNNSKKSKTNLSKKSQYLDIE 1408
Query: 942 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNI-SDENEKIAAKCS---I 997
Q + + L + N I ++ + +D++ S + + + I
Sbjct: 1409 RQDQLYNQTERQFQNELHNRLNQLIERQRENQEAKQMSKIDSLFSTKVKTLLGDIQNDLI 1468
Query: 998 DSIKLGGEKAIVFSQWTKMLDLLEASLKDS----SIQYRRLDGTMSVFARDKAVKDFNTL 1053
D+ EK ++ SQWT MLDL+E SLK + + Y R DG S +DKA+K N
Sbjct: 1469 DNEDNADEKCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQKDKAIKQLNED 1528
Query: 1054 PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV 1113
+V VM++SLK+ +GLN+ A V ++D WWN +E QA R HRIGQTR V V R +
Sbjct: 1529 DDVRVMLVSLKSGGVGLNLTRANRVYMVDPWWNEASEVQAEGRVHRIGQTREVFVKRYIM 1588
Query: 1114 KNTVEDRILALQQKKREMVASAFGEDETGGQ---QTRLTVDDLNYLF 1157
N++E RIL LQ+ K E+ + +D + +L V+D+ LF
Sbjct: 1589 NNSIEIRILELQESKNEIANALLSDDYDPTKPFKNFKLNVEDIKLLF 1635
Score = 276 (102.2 bits), Expect = 3.7e-28, Sum P(5) = 3.7e-28
Identities = 90/292 (30%), Positives = 141/292 (48%)
Query: 615 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 674
G DG I L + W+RV++DE+Q K +T + + L A +WCLSGTPI N
Sbjct: 1127 GNDG---SIPLPALLTIHWWRVIIDESQVCKI-KTLIFKGLQNLDAIHKWCLSGTPISNY 1182
Query: 675 IDDLYSYFRFLRYDPFAV-YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLD 733
+DD+Y FL P A K++ +I P K + L+ V+ I+LRR K +LD
Sbjct: 1183 LDDIYPSLHFLNCYPIAQDLKTWRKLIDRP------KNLELLKKVINPILLRREKSEILD 1236
Query: 734 GEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLR 793
LP K + +DF + E D Y L +++ ++ + G + +NY +L +LLR
Sbjct: 1237 ----FKLPKKNKEIVYLDFNENEADDYDTLFSVAQETLQKISCRGGILKNYATVLALLLR 1292
Query: 794 LRQACDHPLLVKGFDSNS--LLRSSVEMAKKLPQERQM---YLLNCLEASLAICGICNDP 848
LRQ CDH L++ D+++ + S ++A P + + L+C E L + N
Sbjct: 1293 LRQCCDHFHLIRHIDTSTDVICNSCKDIAVN-PVKNHCGHDFCLDCFE-DL----VRNPD 1346
Query: 849 PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNS 900
+ VS+C +C E + D+ N K + S+ A LNNS
Sbjct: 1347 NNNNRVSLCP-----ECDSELILQDNTNGDDSNNKN--NGKSIKKIANLNNS 1391
Score = 110 (43.8 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 501 RPAAGTLVVCPTSVLRQWAEELRNKVTSK--GSLSVLVYHGSSRTK--DPCELAKFDVVI 556
+P A TL++CP S++ QW E++ + L + YHG++R K +L D+VI
Sbjct: 1042 KPKA-TLIICPPSLVSQWKSEIKKHLKPDYFNKLEIFEYHGANRKKKLSGVDLNLMDIVI 1100
Query: 557 TTYSIVSMEVPK 568
TT++ +E K
Sbjct: 1101 TTHNTFGIEFKK 1112
Score = 84 (34.6 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 415 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETL 456
+GG+L D+ GLGKT+ +IALI+ P F T K + +
Sbjct: 982 AGGLLCDEMGLGKTVMSIALIMSNHPV-FSTHRQQKEAYDEI 1022
Score = 46 (21.3 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 355 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKE 408
GG K++ + L ++ A+ APD L L HQ+ L WM+ +E
Sbjct: 884 GGNKNEINPRDLFVKKAL-------LTTEAPDS-LKSQLKHHQKEGLWWMLGRE 929
Score = 41 (19.5 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 288 DEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 325
D+ D L D P+RSN + T + N + +N++
Sbjct: 621 DDLDSKRLIDFRTPSRSNSTTTTTTTTTNNNNNNNNNN 658
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 1076 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPV--SVLRLTVKNTVEDRILALQQKKREMVA 1133
C+ + DL T + IDR + + V +L K+ + D L +K +E+V
Sbjct: 1195 CYPIAQDL----KTWRKLIDRPKNLELLKKVINPILLRREKSEILD--FKLPKKNKEIVY 1248
Query: 1134 SAFGEDETGGQQTRLTV 1150
F E+E T +V
Sbjct: 1249 LDFNENEADDYDTLFSV 1265
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 227 (85.0 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 54/153 (35%), Positives = 87/153 (56%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT------ 1037
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1038 ------MSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1089
+ + + +A++ FN +P S + ++S +A LG+N+ +A V+L D WNP
Sbjct: 545 EDKFLEVELLGQREAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 603
Query: 1090 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+ QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 604 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 195 (73.7 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 562 VSME 565
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 1.3e-15, Sum P(5) = 1.3e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 38 (18.4 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 227 (85.0 bits), Expect = 2.1e-34, Sum P(5) = 2.1e-34
Identities = 54/153 (35%), Positives = 87/153 (56%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT------ 1037
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1038 ------MSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1089
+ + + +A++ FN +P S + ++S +A LG+N+ +A V+L D WNP
Sbjct: 545 EDKFLEVELLGQREAIEAFN-VPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 603
Query: 1090 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+ QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 604 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 636
Score = 195 (73.7 bits), Expect = 2.1e-34, Sum P(5) = 2.1e-34
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 365 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 91 (37.1 bits), Expect = 2.1e-34, Sum P(5) = 2.1e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 2.1e-34, Sum P(5) = 2.1e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 562 VSME 565
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 874 ANEKYGRDDIDNIAREVE 891
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(5) = 2.1e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISAGDYRHRRTEQEEDEELLSESRK 166
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 241 (89.9 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 65/201 (32%), Positives = 103/201 (51%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1073
++LD+LE + +Y RLDG R +++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1134 SAFGEDETGGQQTRLTVDDLN 1154
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 564
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 565 E 565
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 213
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 241 (89.9 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 65/201 (32%), Positives = 103/201 (51%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1073
++LD+LE + +Y RLDG R +++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1134 SAFGEDETGGQQTRLTVDDLN 1154
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 564
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 565 E 565
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 213
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 241 (89.9 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 65/201 (32%), Positives = 103/201 (51%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1073
++LD+LE + +Y RLDG R +++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1134 SAFGEDETGGQQTRLTVDDLN 1154
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 564
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 565 E 565
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 2.3e-34, Sum P(5) = 2.3e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 213
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 293 (108.2 bits), Expect = 2.3e-34, Sum P(4) = 2.3e-34
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1100 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1159
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF T ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1160 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1219
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1220 KQVTVYRLICKGTIEERILQRAKEKSEI 1247
Score = 151 (58.2 bits), Expect = 2.3e-34, Sum P(4) = 2.3e-34
Identities = 54/217 (24%), Positives = 104/217 (47%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 645 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 704
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 705 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 759
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 799
K+ +L T ++ Y L+ I+ D + + QN + L+ ++++ R+ C+
Sbjct: 760 KIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCN 819
Query: 800 HPLLVKGFDSNSLLRSSV---EMAKKLPQERQMYLLN 833
HP L + ++ S S+ E++K + + Q+ + N
Sbjct: 820 HPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFN 856
Score = 75 (31.5 bits), Expect = 2.3e-34, Sum P(4) = 2.3e-34
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 439
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 523 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 565
Score = 52 (23.4 bits), Expect = 2.3e-34, Sum P(4) = 2.3e-34
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 555
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 629
Query: 556 ITTYSIVSMEV 566
IT+Y +V +V
Sbjct: 630 ITSYQLVVQDV 640
Score = 44 (20.5 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 679 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTK 728
YS YDPF Y+ ++ P K K KKL+A LK + +R +
Sbjct: 188 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEDKKLKAKLKKVKKKRRR 233
Score = 42 (19.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSL 945
E+ S +G YN SK+K + + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRKWLKSI 129
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 230 (86.0 bits), Expect = 2.5e-34, Sum P(5) = 2.5e-34
Identities = 74/238 (31%), Positives = 119/238 (50%)
Query: 931 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 990
NSS + +L L + R NH + F+G+ P + D H +S+ +
Sbjct: 419 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVSNSGKM 468
Query: 991 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD------ 1044
+A + IK G + ++FSQ T++LD+LE +Y RLDG R+
Sbjct: 469 VALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHK 528
Query: 1045 ------KAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
+A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DR
Sbjct: 529 HNLFSTEAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDR 587
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1153
AHRIGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 588 AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 645
Score = 192 (72.6 bits), Expect = 2.5e-34, Sum P(5) = 2.5e-34
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 282 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 341
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 342 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 396
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 397 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 448
Score = 91 (37.1 bits), Expect = 2.5e-34, Sum P(5) = 2.5e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 154 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 202
Score = 58 (25.5 bits), Expect = 2.5e-34, Sum P(5) = 2.5e-34
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G + D ++DV +T+Y +
Sbjct: 216 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 272
Query: 562 VSME 565
V E
Sbjct: 273 VIKE 276
Score = 41 (19.5 bits), Expect = 4.6e-15, Sum P(5) = 4.6e-15
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DN++ E E
Sbjct: 851 ANEKYGRDDIDNVAREVE 868
Score = 37 (18.1 bits), Expect = 2.5e-34, Sum P(5) = 2.5e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 117 SLISVGDYRHRRTEQEEDEELLSESRK 143
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 272 (100.8 bits), Expect = 2.6e-34, Sum P(5) = 2.6e-34
Identities = 56/149 (37%), Positives = 96/149 (64%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
++S+K G++ ++FSQ+T MLD+LE L+ +Y RLDG+ + R + FNT ++
Sbjct: 791 LNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQDI 850
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ +A V+L D+ NP + QA R HR+GQT+ V V++L K++
Sbjct: 851 FVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDS 910
Query: 1117 VEDRILALQQKK----REMVASAFGEDET 1141
+ED +L + ++K +EM A+ GE++T
Sbjct: 911 IEDTMLRIGERKLKLEQEMTATQDGEEDT 939
Score = 131 (51.2 bits), Expect = 2.6e-34, Sum P(5) = 2.6e-34
Identities = 49/197 (24%), Positives = 93/197 (47%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS- 695
V DE +KN + R + AK R L+GTP+QN + +L S F+ + F+ S
Sbjct: 558 VFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQ 617
Query: 696 FCSMIKVPISKNPVKGYKK-----LQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
M + S+ +++ + ++K +LRR K +L LP K ++
Sbjct: 618 IAKMFSMKSSEEQ-SSFERDRITHAKLIMKPFILRRVKSEVLK-----QLPAKEEQVEFC 671
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSN 810
++ +++ YS L + K +++ G K+ N+++ +LR+ +HPLL + F +
Sbjct: 672 AMSERQQELYSAL----LHKLK-HSSNGE-KRELTNVMM---QLRKMSNHPLLHRQFYTT 722
Query: 811 SLLRSSVEMAKKLPQER 827
L++ ++ K P R
Sbjct: 723 EKLKAMSKLMLKEPSHR 739
Score = 87 (35.7 bits), Expect = 2.6e-34, Sum P(5) = 2.6e-34
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 356 GMKSKASDERL-ILQVAMQGISQPNAEASAPDGVLAVPLLR-HQRIALSWMVQKETSSLH 413
G+ SK + + ++Q Q + + + P+ + + L+ +Q I L+W+V + L
Sbjct: 390 GLMSKCEEISVKLIQDVTQVMDKGPGSMTQPEILSSTFQLKPYQLIGLNWLVLLHQNKL- 448
Query: 414 CSGGILADDQGLGKTISTIALI 435
GILAD+ GLGKTI I+ +
Sbjct: 449 --SGILADEMGLGKTIQAISFL 468
Score = 64 (27.6 bits), Expect = 2.6e-34, Sum P(5) = 2.6e-34
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKDPCELAKFDVVITTYS 560
L+ P S L W EL S VLVY+GS+ R + ++ +++++++TY+
Sbjct: 481 LITVPASTLDNWVRELNLWCPS---FKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYN 537
Query: 561 I 561
+
Sbjct: 538 L 538
Score = 48 (22.0 bits), Expect = 2.6e-34, Sum P(5) = 2.6e-34
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 253 DMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARS 304
D ++EI SM + KL P ++ SS + V DE + +++ +P S
Sbjct: 47 DSDSEISGSSMMP-VRKLRPRKRKAASSADEYSVSDEEEEIVVKTKRRPTHS 97
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 227 (85.0 bits), Expect = 2.7e-34, Sum P(5) = 2.7e-34
Identities = 74/238 (31%), Positives = 118/238 (49%)
Query: 931 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 990
NSS + +L L + R NH + F+G+ P + D H +S+ +
Sbjct: 418 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVSNSGKM 467
Query: 991 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG-TMSVFARDK---- 1045
+ + +K G + ++FSQ T++LD+LE +Y RLDG T DK
Sbjct: 468 VVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEV 527
Query: 1046 -------AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DR
Sbjct: 528 EFLGQREAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDR 586
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1153
AHRIGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 587 AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 644
Score = 192 (72.6 bits), Expect = 2.7e-34, Sum P(5) = 2.7e-34
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 281 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 340
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 341 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 395
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 396 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 447
Score = 91 (37.1 bits), Expect = 2.7e-34, Sum P(5) = 2.7e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 153 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 201
Score = 59 (25.8 bits), Expect = 2.7e-34, Sum P(5) = 2.7e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 215 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 271
Query: 562 VSME 565
V E
Sbjct: 272 VIKE 275
Score = 42 (19.8 bits), Expect = 2.0e-15, Sum P(5) = 2.0e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 850 ANEKYGRDDIDNIAREVE 867
Score = 38 (18.4 bits), Expect = 2.7e-34, Sum P(5) = 2.7e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 116 SLISAGDYRHRRTEQEEDEELLSESRK 142
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 227 (85.0 bits), Expect = 3.7e-34, Sum P(5) = 3.7e-34
Identities = 74/238 (31%), Positives = 118/238 (49%)
Query: 931 NSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEK 990
NSS + +L L + R NH + F+G+ P + D H +S+ +
Sbjct: 439 NSSGKMDKMRLLNILMQLR--KCCNHP--YLFDGAEPGPPYTTDEH------IVSNSGKM 488
Query: 991 IAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG-TMSVFARDK---- 1045
+ + +K G + ++FSQ T++LD+LE +Y RLDG T DK
Sbjct: 489 VVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEV 548
Query: 1046 -------AVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
A++ FN P S + ++S +A LG+N+ +A V+L D WNP + QA+DR
Sbjct: 549 EFLGQREAIEAFNA-PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDR 607
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT-RLTVDDL 1153
AHRIGQ +PV V RL NTVE+RI+ + K + + + QQ+ +L +++
Sbjct: 608 AHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEM 665
Score = 192 (72.6 bits), Expect = 3.7e-34, Sum P(5) = 3.7e-34
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 302 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 361
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L AVLK +LRR K D E +LPPK +
Sbjct: 362 FNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 416
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D ++G K + + +L +L++LR+ C+HP L G
Sbjct: 417 LGLSKMQREWYTKILMKDIDVLN---SSG--KMDKMRLLNILMQLRKCCNHPYLFDG 468
Score = 91 (37.1 bits), Expect = 3.7e-34, Sum P(5) = 3.7e-34
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 174 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 222
Score = 59 (25.8 bits), Expect = 3.7e-34, Sum P(5) = 3.7e-34
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 236 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 292
Query: 562 VSME 565
V E
Sbjct: 293 VIKE 296
Score = 42 (19.8 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 871 ANEKYGRDDIDNIAREVE 888
Score = 38 (18.4 bits), Expect = 3.7e-34, Sum P(5) = 3.7e-34
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 137 SLISAGDYRHRRTEQEEDEELLSESRK 163
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 239 (89.2 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 457 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 508
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1073
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 509 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 568
Query: 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 569 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 626
Query: 1134 SAFGEDETGGQQTRLTVDDLN 1154
D QQ RL +LN
Sbjct: 627 -----DSIVIQQGRLVDQNLN 642
Score = 193 (73.0 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 358 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 412
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 413 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 464
Score = 79 (32.9 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 53 (23.7 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 564
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 565 E 565
E
Sbjct: 292 E 292
Score = 42 (19.8 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 213
+LLS H + EE E+L+ ES +A C D S
Sbjct: 133 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 172
Score = 37 (18.1 bits), Expect = 8.0e-29, Sum P(4) = 8.0e-29
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 266 HLLKLSPESIQSN-SSDCKSHVDDEPDICILEDISQPARSNQSLVL 310
H++ L P+S N S+ K V +C++ D Q A + ++L
Sbjct: 231 HMV-LVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLL 275
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 239 (89.2 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 457 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 508
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1073
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 509 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 568
Query: 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 569 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 626
Query: 1134 SAFGEDETGGQQTRLTVDDLN 1154
D QQ RL +LN
Sbjct: 627 -----DSIVIQQGRLVDQNLN 642
Score = 193 (73.0 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 358 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 412
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 413 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 464
Score = 79 (32.9 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 53 (23.7 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 564
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 565 E 565
E
Sbjct: 292 E 292
Score = 42 (19.8 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 213
+LLS H + EE E+L+ ES +A C D S
Sbjct: 133 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 172
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 239 (89.2 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 458 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 509
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1073
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 510 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 569
Query: 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 570 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 627
Query: 1134 SAFGEDETGGQQTRLTVDDLN 1154
D QQ RL +LN
Sbjct: 628 -----DSIVIQQGRLVDQNLN 643
Score = 193 (73.0 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 359 FNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 413
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 414 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 465
Score = 79 (32.9 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 53 (23.7 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 564
+V+ P S L W E + V + S+ ++ ++ +D ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 565 E 565
E
Sbjct: 293 E 293
Score = 42 (19.8 bits), Expect = 3.8e-34, Sum P(5) = 3.8e-34
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKRA-RFCQEICDGSS 213
+LLS H + EE E+L+ ES +A C D S
Sbjct: 134 NLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPS 173
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 253 (94.1 bits), Expect = 5.9e-34, Sum P(3) = 5.9e-34
Identities = 62/196 (31%), Positives = 104/196 (53%)
Query: 967 CCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1026
C G + + + S + ++ S D + + +A++F Q MLD++E L
Sbjct: 1650 CGIGSQDSEYNNNVSKKKSLQQQQQQQLISADGV-ISEHRALIFCQLKDMLDIVENELLR 1708
Query: 1027 S---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083
S+ + RLDG+ R V+ FN P + V++++ K LGLN+ A V+ ++
Sbjct: 1709 KYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVLLLTTKVGGLGLNLTGADTVIFVEH 1768
Query: 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG 1143
WNP + QA+DRAHR+GQ + V+V RL K+T+E++I+ LQ+ K +AS + G
Sbjct: 1769 DWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGLQKFKMN-IASTIVNQQNAG 1827
Query: 1144 QQTRLTVDDLNYLFMV 1159
Q+ + + L LF V
Sbjct: 1828 LQS-MDTNQLLDLFDV 1842
Score = 172 (65.6 bits), Expect = 5.9e-34, Sum P(3) = 5.9e-34
Identities = 55/189 (29%), Positives = 89/189 (47%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K + VLDE IKN ++++++ ++A+ R LSGTPIQN + +L+S F FL
Sbjct: 1427 LTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLELWSLFDFLMP 1486
Query: 688 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGE 735
K F PI SK G ++++ K + MLRR K +L
Sbjct: 1487 GFLGTEKVFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLS-- 1544
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
+LPPK+I + +D ++ Y ++ K G+ K+ ++ L +R
Sbjct: 1545 ---DLPPKIIQDYYCELSDLQKKLYKDFAKTQKETIKT-DVQGSEKEGKTHVFQALQYMR 1600
Query: 796 QACDHPLLV 804
+ C+HP LV
Sbjct: 1601 KLCNHPALV 1609
Score = 99 (39.9 bits), Expect = 5.9e-34, Sum P(3) = 5.9e-34
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 463 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGR-PAAGTLVVCPTSVLRQWAEE 521
+GI + + L K C +V + + NF E +LV+CP S++ W +E
Sbjct: 1322 HGILCDDMGLGKTLQTIC-IVSSDHHIREENFKETGSAEYRKLPSLVICPPSLIGHWEQE 1380
Query: 522 LRNKVTSKGSLSVLVYHGSSRTKDPC--ELAKFDVVITTYSIVSMEV 566
+ N+ + VLVY GS + P ++ DVV+T+Y + +V
Sbjct: 1381 I-NQYAP--FMKVLVYAGSPSIRIPLRGQIPDADVVVTSYDVCRNDV 1424
Score = 85 (35.0 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE---RPPSFR-TEDD 448
L ++Q+ ++W+ LH GIL DD GLGKT+ TI ++ + R +F+ T
Sbjct: 1302 LRKYQQEGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIVSSDHHIREENFKETGSA 1358
Query: 449 NKRQLETL 456
R+L +L
Sbjct: 1359 EYRKLPSL 1366
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 230 (86.0 bits), Expect = 6.6e-34, Sum P(5) = 6.6e-34
Identities = 42/118 (35%), Positives = 75/118 (63%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G + ++F+Q +ML++LE +K++ Y ++DGT ++ +R + FN ++ V I++
Sbjct: 833 GHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDIFVFILTT 892
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1121
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 893 RVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKI 950
Score = 161 (61.7 bits), Expect = 6.6e-34, Sum P(5) = 6.6e-34
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
+ + W V+LDE I+N V AC R R+ LSG+P+QN + +L+S F F+
Sbjct: 612 IQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFP 671
Query: 688 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 735
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 672 GKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKA---DVK 728
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
++LP K + T+++R Y Q ++S++ ++ + + + L+ LR
Sbjct: 729 ANLSLPDKNEQVLFCRLTEDQRQVY-QTFLDSKEVYQ-------ILNGDMQVFSGLIALR 780
Query: 796 QACDHPLLVKG 806
+ C+HP L G
Sbjct: 781 KICNHPDLFTG 791
Score = 96 (38.9 bits), Expect = 6.6e-34, Sum P(5) = 6.6e-34
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 444
G L L ++Q+ + WM + LHC +GGIL D+ GLGKTI IA + +
Sbjct: 478 GFLWKKLFKYQQTGVRWMWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKLK 532
Query: 445 TEDDNKR 451
T N R
Sbjct: 533 TRGSNYR 539
Score = 70 (29.7 bits), Expect = 6.6e-34, Sum P(5) = 6.6e-34
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GSSRTKD----PCELAKFDVVITTY 559
T++VCP +V+ QW +E T V V H GS +K P +A ++IT+Y
Sbjct: 546 TVIVCPATVMHQWVKEFH---TWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHGILITSY 602
Query: 560 SIV 562
S +
Sbjct: 603 SYI 605
Score = 55 (24.4 bits), Expect = 6.6e-34, Sum P(5) = 6.6e-34
Identities = 30/129 (23%), Positives = 57/129 (44%)
Query: 184 QVVHAKEEHEDLILESKRARFCQEICDG-SSSRSPIDGRHLSLNLNGSRQYFPYAQPSTL 242
QV A +E +++ + + + D S S + +H++ L Q P+A S
Sbjct: 100 QVDRAIQEANQAAAKAEAQKEYESVLDDVRSCTSAL--KHINKILE---QLTPHAASSKD 154
Query: 243 NKKELDGVK---EDMEAEIKT-RSMASHLLKL-SPESIQSNSSDCKSHVDDEPDICILED 297
++++ VK E+ E ++K R+ L L E IQ ++ D+EP L
Sbjct: 155 ISRKIESVKRQKENKEKQLKKIRAKQKRLQALLDGEDIQKLEAELLIEDDEEPGPSTLGS 214
Query: 298 ISQPARSNQ 306
+ PA+ ++
Sbjct: 215 MLMPAQESE 223
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 242 (90.2 bits), Expect = 6.6e-34, Sum P(4) = 6.6e-34
Identities = 68/204 (33%), Positives = 105/204 (51%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 443 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 494
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNM 1072
++LD+LE + +Y RLDG R ++ +N P S V ++S +A LG+N+
Sbjct: 495 RVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNE-PGSSKFVFMLSTRAGGLGINL 553
Query: 1073 VAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 554 ATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL- 612
Query: 1133 ASAFGEDETGGQQTRLTVDDLNYL 1156
D QQ RL +LN L
Sbjct: 613 ------DSIVIQQGRLVDQNLNKL 630
Score = 190 (71.9 bits), Expect = 6.6e-34, Sum P(4) = 6.6e-34
Identities = 53/177 (29%), Positives = 91/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L++ FL D
Sbjct: 284 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 343
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F + F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 344 FNSSEDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 398
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 399 VGLSKMQREWYTRILMKDIDILN---SAG--KLDKMRLLNILMQLRKCCNHPYLFDG 450
Score = 79 (32.9 bits), Expect = 6.6e-34, Sum P(4) = 6.6e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++ L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 165 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 204
Score = 49 (22.3 bits), Expect = 6.6e-34, Sum P(4) = 6.6e-34
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVL--VYHGSSRTKDPCELAKFDVVITTYSIVSM 564
+V+ P S L W E + V + ++ ++ ++ +D ++DV +T+Y ++
Sbjct: 218 MVLVPKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIK 277
Query: 565 E 565
E
Sbjct: 278 E 278
Score = 46 (21.3 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1025 KDSSIQYRRLDGTMSVFARDKAVK 1048
K SS Q R++DGT R K +K
Sbjct: 1014 KPSSAQKRKMDGTPDGRGRKKKLK 1037
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 231 (86.4 bits), Expect = 7.3e-34, Sum P(4) = 7.3e-34
Identities = 53/157 (33%), Positives = 89/157 (56%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ +++LD+LE +Y R+DG+ S R +A+ ++N E V
Sbjct: 502 LKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFV 561
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
+++ +A LG+N+V A V+L D WNP + QA+DRAHRIGQ + V V R +N +E
Sbjct: 562 FLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIE 621
Query: 1119 DRILALQQKKREMVASAFGEDETGGQQTRL--TVDDL 1153
++++ +K + + TG + L + DDL
Sbjct: 622 EKVIERAAQKLRLDQLVI-QQGTGKKTASLGNSKDDL 657
Score = 172 (65.6 bits), Expect = 7.3e-34, Sum P(4) = 7.3e-34
Identities = 51/180 (28%), Positives = 90/180 (50%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ W +V+DEA IKN ++ +++ +K R ++GTP+QN + +L++ FL
Sbjct: 301 LKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLP 360
Query: 688 DPFAVYKSFCSMIKVPISKNPVK-GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
D F + F + S+ + ++L +VL +LRR K D E +L PK+
Sbjct: 361 DIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKA---DVEK--SLLPKIET 415
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V TD + +Y L D A G ++ +L ++++LR+ C+HP L +G
Sbjct: 416 NVYVGMTDMQIQWYKSLLEKDIDAVN--GAVGK-REGKTRLLNIVMQLRKCCNHPYLFEG 472
Score = 82 (33.9 bits), Expect = 7.3e-34, Sum P(4) = 7.3e-34
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+ +P V + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 173 SESPSFVKSGKLRDYQVQGLNWLISLHENKL---SGILADEMGLGKTLQTISFL 223
Score = 77 (32.2 bits), Expect = 7.3e-34, Sum P(4) = 7.3e-34
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 494 FVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL---- 549
+V+Q +G P L++ P S L W E K T +++VLV HG T+
Sbjct: 228 YVKQIEG-PF---LIIVPKSTLDNWRREFL-KWTP--NVNVLVLHGDKDTRADIVRNIIL 280
Query: 550 -AKFDVVITTYSIVSME 565
A+FDV+IT+Y +V E
Sbjct: 281 EARFDVLITSYEMVIRE 297
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 234 (87.4 bits), Expect = 7.4e-34, Sum P(4) = 7.4e-34
Identities = 50/134 (37%), Positives = 83/134 (61%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G + ++FSQ +++LD+LE + +Y R+DG+ + R +A+ D+N P+
Sbjct: 511 LKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNA-PDS 569
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V +++ +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ + V V RL
Sbjct: 570 KKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTD 629
Query: 1115 NTVEDRILALQQKK 1128
N+VE++IL +K
Sbjct: 630 NSVEEKILERATQK 643
Score = 188 (71.2 bits), Expect = 7.4e-34, Sum P(4) = 7.4e-34
Identities = 51/181 (28%), Positives = 94/181 (51%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL K+ W +++DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 312 PLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLL 371
Query: 687 YDPFAVYKSFCSMIKVPISKNPV-KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745
D F+ + F ++ K K+L VL+ +LRR K D E + LP K +
Sbjct: 372 PDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKS---DVETSL-LPKKEL 427
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
L V + ++ +Y + I +D + G+ K++ +L ++++LR+ C+HP L
Sbjct: 428 NL-YVGMSSMQKKWYKK--ILEKDLDAVNGSNGS-KESKTRLLNIMMQLRKCCNHPYLFD 483
Query: 806 G 806
G
Sbjct: 484 G 484
Score = 74 (31.1 bits), Expect = 7.4e-34, Sum P(4) = 7.4e-34
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 394 LRHQRI-ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR +I ++W+V + + GILAD+ GLGKT+ TI+ +
Sbjct: 196 LRPYQIQGVNWLVSLHKNKI---AGILADEMGLGKTLQTISFL 235
Score = 66 (28.3 bits), Expect = 7.4e-34, Sum P(4) = 7.4e-34
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-----FDVVITTYSI 561
LV+ P S L W E+ N+ T ++ + G + K FDVVI +Y I
Sbjct: 249 LVIAPKSTLNNWLREI-NRWTP--DVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEI 305
Query: 562 VSMEVPKQPL 571
+ E K PL
Sbjct: 306 IIRE--KSPL 313
Score = 44 (20.5 bits), Expect = 2.8e-14, Sum P(4) = 2.8e-14
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 891 VFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIK 936
V AT + + + G+ I +++D E + +GV +KI+
Sbjct: 1062 VLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIE 1107
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 242 (90.2 bits), Expect = 8.1e-34, Sum P(5) = 8.1e-34
Identities = 52/130 (40%), Positives = 75/130 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K G + ++F+Q T+MLD+LE L Y RLDG+ V R ++ FN +
Sbjct: 2055 LKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCF 2114
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + TVE+
Sbjct: 2115 ILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEE 2174
Query: 1120 RILALQQKKR 1129
IL +KR
Sbjct: 2175 NILKKANQKR 2184
Score = 180 (68.4 bits), Expect = 8.1e-34, Sum P(5) = 8.1e-34
Identities = 52/179 (29%), Positives = 96/179 (53%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEAQ+IKN ++Q ++ ++RR L+GTP+QN++ +L+S FL F
Sbjct: 740 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 799
Query: 693 YKSFCSMIKVPISKNPVKG---Y-----KKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
++ F P++ ++G Y K+L VL+ +LRR K +D E +P K
Sbjct: 800 HREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKY 853
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ + + +R Y + ++ KE A G ++++++ +L++LR+ C+HP L
Sbjct: 854 EHVIRCRLSKRQRCLYD--DFMAQTTTKETLATG----HFMSVINILMQLRKVCNHPNL 906
Score = 103 (41.3 bits), Expect = 8.1e-34, Sum P(5) = 8.1e-34
Identities = 45/168 (26%), Positives = 74/168 (44%)
Query: 274 SIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVA--LGKP 331
S QS+S + +S D+E + E+ S + S +S + ++S G
Sbjct: 494 SSQSDSVEDRSE-DEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEEDDDFGVE 552
Query: 332 VVTSQHSSYSDYPGYPGVPLTGLG--GMKSKASDERLILQ-VAMQGISQPNAEASAPDGV 388
+ ++ S+ G P G G K + +D + + +G + + P +
Sbjct: 553 YLLARDEEQSEADAGSGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPL 612
Query: 389 LAVPLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L LR +Q I L W+V L+ GILAD+ GLGKTI TI+L+
Sbjct: 613 LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 657
Score = 64 (27.6 bits), Expect = 8.1e-34, Sum P(5) = 8.1e-34
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
L++ PTSV+ W EL+ S +L Y+G+ + + F V IT+Y +
Sbjct: 671 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 727
Query: 562 V 562
V
Sbjct: 728 V 728
Score = 42 (19.8 bits), Expect = 8.1e-34, Sum P(5) = 8.1e-34
Identities = 17/62 (27%), Positives = 23/62 (37%)
Query: 89 YGNSLS---NITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEP 145
Y + LS N L K + PC S S +S D+ + D P D E
Sbjct: 243 YSDLLSQSLNQPLTSSKAGSSPCLGSSSAASSPPPPASRLDDEDGDFQPQEDEEEDDEET 302
Query: 146 ID 147
I+
Sbjct: 303 IE 304
Score = 41 (19.5 bits), Expect = 1.4e-11, Sum P(4) = 1.4e-11
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 323 NHSVALG-KPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAE 381
N +VA PV+ + S +P P P + + AS A Q ++ P A
Sbjct: 1538 NSTVAPACSPVLVPASALASPFPSAPN-PAPAQASLLAPASS-------ASQALATPLAP 1589
Query: 382 ASAPDGVLAVP 392
+AP + P
Sbjct: 1590 MAAPQTAILAP 1600
Score = 40 (19.1 bits), Expect = 4.8e-28, Sum P(4) = 4.8e-28
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 446 EDDNKRQLETLNLDEEDNG----IQVNGLDLVKQESD 478
ED+ + ET+ ++E+ G Q ++L+++E +
Sbjct: 293 EDEEEDDEETIEVEEQQEGNDAEAQRREIELLRREGE 329
Score = 38 (18.4 bits), Expect = 3.2e-27, Sum P(5) = 3.2e-27
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 273 ESIQSNSSDCKSHVDDEPDICILEDISQPARS 304
+ + +NSSDC+ E + ED S + S
Sbjct: 468 DEVDANSSDCEPEGPVEAEEPPQEDSSSQSDS 499
Score = 38 (18.4 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 264 ASHLLKLSPESIQSNSSDCKSHV 286
A+ L L+P S QS +S S V
Sbjct: 1802 AAQTLALAPASTQSPASQASSLV 1824
Score = 37 (18.1 bits), Expect = 3.6e-11, Sum P(4) = 3.6e-11
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 315 SMNRSACSNHSVALGKPVVTSQHSSYSDYPGYP 347
S+ S S + AL + T+ S S PG+P
Sbjct: 1492 SLAPSGASPSASALTLGLATAPSLSSSQTPGHP 1524
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 249 (92.7 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 59/155 (38%), Positives = 85/155 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K+ G + ++F+Q TKMLD+LEA L Y RLDG+ V R ++ FN +
Sbjct: 1670 LKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCF 1729
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ +G+N+ A V+ D WNPT + QA DR HRIGQTR V + RL + T+E
Sbjct: 1730 ILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIEV 1789
Query: 1120 RILALQQKKREMVASAF-GEDETGGQQTRLTVDDL 1153
IL +KR + A G + T T+ DL
Sbjct: 1790 NILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDL 1824
Score = 158 (60.7 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 49/177 (27%), Positives = 90/177 (50%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W ++LDEAQ+IKN ++Q + +RR L+GTP+QN + +L+S FL F+
Sbjct: 1036 WKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSS 1095
Query: 693 YKSFCSMIKVPISKNPVKG---YK-----KLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
++ F P++ ++G Y +L V++ +LRR K + E +P K
Sbjct: 1096 HREFKEWFSNPMT-GMIEGNMEYNETLITRLHKVIRPFLLRRLKKEV---EK--QMPKKY 1149
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
+ ++ +R Y + SR + +E G N ++++ +L++LR+ C+HP
Sbjct: 1150 EHVITCRLSNRQRYLYE--DFMSRAKTRETLQTG----NLLSVINVLMQLRKVCNHP 1200
Score = 110 (43.8 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 74/330 (22%), Positives = 130/330 (39%)
Query: 115 SSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIG 174
S + ++ K E +DD P S D E I +A + + + K+S F
Sbjct: 643 SLNSSRLTSPKRESDDDFRP-ESGSEDDEETIAKAEEDAADVKEEVTALA-KESEMDF-- 698
Query: 175 LSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYF 234
L N + E+ D +++ +++ + S S + + S + +
Sbjct: 699 --DDFL--NDLPPGYLENRDKLMKEEQSSAIKTETPDDSDDSEFEAKEASDDDENTISKQ 754
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICI 294
A+ +KKE+D ++ D + ++ + +A + + P + + +D + D
Sbjct: 755 EEAEQEIDHKKEIDELEADNDLSVE-QLLAKYKSEQPPSPKRRKLAPRDPELDSDDDSTA 813
Query: 295 LEDI--SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 352
++ S+ A + L T+ + G + + + S G
Sbjct: 814 VDSTEESEDAATEDEEDLS-TVKTDTDMEEQDEQEDGLKSLMADADATSGAAGSGST--A 870
Query: 353 GLGGMKSKASDERLILQVAMQGISQPNAEA-SAPDGVLAVP-LLRH-----QRIALSWMV 405
G G K D+ L A+ QP S+ + V VP LL+H Q I L W+V
Sbjct: 871 GASGNK----DDMLNDAAALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLV 926
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALI 435
L+ GILAD+ GLGKTI TIAL+
Sbjct: 927 TMNERKLN---GILADEMGLGKTIQTIALL 953
Score = 62 (26.9 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
L+V P+SV+ W E+ K G +L Y+GS + + + F V IT+Y +
Sbjct: 967 LIVVPSSVMLNW--EMEFKKWCPG-FKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKL 1023
Query: 562 V 562
V
Sbjct: 1024 V 1024
Score = 39 (18.8 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 401 LSWMV-QKETSSLHCSGGI---LADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETL 456
LS++V Q E S G+ +AD L S + +E FR E ++ ET+
Sbjct: 616 LSFIVDQTEKFSQQLVEGMNKSVADTPSLNS--SRLTSPKRESDDDFRPESGSEDDEETI 673
Query: 457 NLDEED 462
EED
Sbjct: 674 AKAEED 679
Score = 39 (18.8 bits), Expect = 6.6e-12, Sum P(4) = 6.6e-12
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 1105 PVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTV 1150
P V+ +T T + +LQQ++++ G + QQ R V
Sbjct: 3143 PAEVMTITQTTTTLPTVGSLQQQQQQQQQQG-GISQPTTQQVRKLV 3187
Score = 38 (18.4 bits), Expect = 3.8e-26, Sum P(4) = 3.8e-26
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 422 DQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCR 481
D L + A+ E TED+ + D E+ Q +GL + ++D
Sbjct: 802 DPELDSDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQDEQEDGLKSLMADADATS 861
Query: 482 -VVPNGSSA 489
+GS+A
Sbjct: 862 GAAGSGSTA 870
Score = 38 (18.4 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 294 ILEDISQPARSNQSLVLGKTLSM-N-----RSACSNHSVALGKPVVT 334
+ ED A++ ++L G LS+ N R C++ ++ +P ++
Sbjct: 1164 LYEDFMSRAKTRETLQTGNLLSVINVLMQLRKVCNHPNMFEARPTIS 1210
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 264 (98.0 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 61/155 (39%), Positives = 83/155 (53%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K GG +A++F+Q TKMLD+LE L +Y RLDGT V R FN +
Sbjct: 1385 LKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAF 1444
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
I+S ++ LG+N+ A V+ DL WNP + Q DR HRIGQTR V + R + T+E
Sbjct: 1445 ILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTIES 1504
Query: 1120 RILALQQKKREMVASAFGEDE-TGGQQTRLTVDDL 1153
IL +KR + E E T T+L V D+
Sbjct: 1505 NILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDM 1539
Score = 156 (60.0 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 55/188 (29%), Positives = 89/188 (47%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR- 686
L + W ++LDEA +IKN R+Q +A R + R L+GTP+QN + +L+S FL
Sbjct: 942 LKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMP 1001
Query: 687 -------YDPFAVYKSFCSMIKVPISKNPVKGYKKL-----QAVLKT-IMLRRTKGTLLD 733
+ FA ++F + P+ + G + + Q V K +LR L
Sbjct: 1002 TDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLHTVLRPYILRRLK 1061
Query: 734 GEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLR 793
+ +P K + + +R Y SR Q KE A+G NY++I+ L++
Sbjct: 1062 ADVEKQMPGKYEHVVYCRLSKRQRYLYDGFM--SRAQTKETLASG----NYLSIINCLMQ 1115
Query: 794 LRQACDHP 801
LR+ C+HP
Sbjct: 1116 LRKVCNHP 1123
Score = 93 (37.8 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 32/100 (32%), Positives = 46/100 (46%)
Query: 337 HSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ-PNAEASAPDGVLAVPLLR 395
HS + PG T +S +S E + A S P + P +L L
Sbjct: 769 HSRAASSEASPGTVATKPSEPESVSSIEAPAEKHAQPSESPGPGLKTPIPH-LLRGTLRE 827
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L W+ ++ ++ GILAD+ GLGKTI TIAL+
Sbjct: 828 YQHFGLDWLAGLYSNHIN---GILADEMGLGKTIQTIALL 864
Score = 59 (25.8 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD-----VVITTYSI 561
LVV PTSV+ W E+ K G ++ Y+G+ + D V+IT+Y +
Sbjct: 878 LVVVPTSVILNW--EMEFKKWCPG-FKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQL 934
Query: 562 V 562
V
Sbjct: 935 V 935
Score = 47 (21.6 bits), Expect = 8.5e-29, Sum P(5) = 8.5e-29
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 299 SQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMK 358
++P RS+Q + K +S R+A A+ P+ S S + GV + G
Sbjct: 117 AKPTRSSQKQYVSKAVSSQRNA------AVSSPLPMSPSRSGINRRSLAGVAVNGSPSTT 170
Query: 359 SKAS 362
+K S
Sbjct: 171 AKGS 174
Score = 43 (20.2 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 80 EDSKNGL-PIYGNSLSNITLGDGKR 103
E ++G P+YG+SL D K+
Sbjct: 1245 ESKRHGRRPVYGSSLIEFLTADSKQ 1269
Score = 39 (18.8 bits), Expect = 1.8e-33, Sum P(5) = 1.8e-33
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 866 ICERLTADDNQCPTRNCKIR 885
+ E LTAD Q PT + +R
Sbjct: 1259 LIEFLTADSKQRPTAHGPLR 1278
Score = 39 (18.8 bits), Expect = 9.0e-27, Sum P(5) = 9.0e-27
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 511 PTSVLRQWAEELRNK 525
P +LR+ EE+R K
Sbjct: 385 PEDILREQQEEMRGK 399
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 293 (108.2 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1107 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1166
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF T ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1167 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1226
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1227 KQVTVYRLICKGTIEERILQRAKEKSEI 1254
Score = 142 (55.0 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 711
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 712 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 766
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 799
K+ +L T ++ Y L+ I+ D + + Q + L+ ++++ R+ C+
Sbjct: 767 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCN 826
Query: 800 HPLL 803
HP L
Sbjct: 827 HPEL 830
Score = 75 (31.5 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 439
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 530 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 572
Score = 52 (23.4 bits), Expect = 2.0e-33, Sum P(4) = 2.0e-33
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 555
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 580 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 636
Query: 556 ITTYSIVSMEV 566
IT+Y +V +V
Sbjct: 637 ITSYQLVVQDV 647
Score = 49 (22.3 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 679 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 735
YS YDPF Y+ ++ P K K KKL+A LK + +R + L E
Sbjct: 195 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRRDEELSSE 247
Score = 42 (19.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 899 NSLSQRQPG---QEIPTDYSDSKLVEAPSC--EGVWYNSSKIKAALEVLQS-LAKPRGNT 952
NSL G E+ YS + ++++ S +G YN SK+K + + L+S L +
Sbjct: 78 NSLLGETSGASTSEMLNTYSLNGVLQSESKFDKGNLYNFSKLKKSRKWLKSILLSDESSE 137
Query: 953 VTNHS 957
+HS
Sbjct: 138 ADSHS 142
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 233 (87.1 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 59/176 (33%), Positives = 97/176 (55%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D H +DN + + + K G + ++FSQ++
Sbjct: 410 NHP--YLFDGAEPGPPFTTDQH---LVDN---SGKMVVLDKLLMKFKEQGSRVLIFSQFS 461
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNM 1072
+MLDLLE +Y RLDG+ R A++ +N P+ + +++ +A LG+N+
Sbjct: 462 RMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNA-PDSKKFIFMLTTRAGGLGINL 520
Query: 1073 VAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1128
A V++ D WNP ++ QA+DRAHRIGQ + V V RL +NTV++RI+ + K
Sbjct: 521 ATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAK 576
Score = 177 (67.4 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 49/179 (27%), Positives = 90/179 (50%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W +++DEA IKN +++++ L ++ R ++GTP+QN + +L++ FL
Sbjct: 249 LKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLP 308
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
D F F S ++L VL+ +LRR K D E + LP K + +
Sbjct: 309 DIFTSSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKS---DVEKSL-LPKKEVKV 364
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D AG V++ ++ +L+ LR+ +HP L G
Sbjct: 365 -YVGLSKMQREWYTKVLMKDIDIIN---GAGKVEK--ARLMNILMHLRKCVNHPYLFDG 417
Score = 96 (38.9 bits), Expect = 4.4e-33, Sum P(3) = 4.4e-33
Identities = 42/161 (26%), Positives = 73/161 (45%)
Query: 276 QSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS-VALGKPVVT 334
+S+ +D VDDEP+ D + + + L L KT + + S + +A G PV T
Sbjct: 23 ESSGNDPSMEVDDEPES---SDAADSFKRFERL-LQKTENFSHCLSSGDAKLATGAPVDT 78
Query: 335 SQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLL 394
+ S G G + DE ++ A++ + S P + +
Sbjct: 79 KKRGRPSKKNGIDG---DHRHRKTEQEEDEEMVAD-AIKSDDLVIFDKS-PFYIENGEMR 133
Query: 395 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ + + ++ GILAD+ GLGKT+ TI++I
Sbjct: 134 DYQVRGLNWLASLQHNKIN---GILADEMGLGKTLQTISMI 171
Score = 82 (33.9 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 37/154 (24%), Positives = 72/154 (46%)
Query: 421 DDQGLGKTISTIALILKERPPSFRTEDDNKR--QLETLNLDEEDNGIQVNGLDLVKQESD 478
D++ + I + L++ ++ P F E+ R Q+ LN ++NG+ + E
Sbjct: 104 DEEMVADAIKSDDLVIFDKSP-FYIENGEMRDYQVRGLNWLASLQHNKINGI--LADEMG 160
Query: 479 YCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH 538
+ + + +++ K + A+ LV+ P S L+ WA E + S ++ VL+
Sbjct: 161 LGKTL---QTISMIGYMKHYKNK-ASPHLVIVPKSTLQNWANEFKKWCPSINAV-VLIGD 215
Query: 539 GSSRT---KDPCELAKFDVVITTYSIVSMEVPKQ 569
++R +D KFDV TTY ++ ++V Q
Sbjct: 216 EAARNQVLRDVILPQKFDVCCTTYEMM-LKVKTQ 248
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 230 (86.0 bits), Expect = 5.1e-33, Sum P(4) = 5.1e-33
Identities = 49/130 (37%), Positives = 78/130 (60%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ +++LD+LE +Y R+DG + R A+ ++N E V
Sbjct: 502 LKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEKFV 561
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
+++ +A LG+N+ A V+L D WNP + QA+DRAHRIGQT+ V V R V NT+E
Sbjct: 562 FLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIE 621
Query: 1119 DRILALQQKK 1128
+++L +K
Sbjct: 622 EKVLERAAQK 631
Score = 179 (68.1 bits), Expect = 5.1e-33, Sum P(4) = 5.1e-33
Identities = 51/179 (28%), Positives = 92/179 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K W +++DEA IKN + +A+ ++ R ++GTP+QN I +L++ FL
Sbjct: 303 LKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLP 362
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
D F ++F ++ ++L VL+ +LRR K D E + LP K + L
Sbjct: 363 DVFGDSEAFDQWFSGE-GQDSDTVVQQLHRVLRPFLLRRVKA---DVEKSL-LPKKEVNL 417
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ T+ +R +Y + I +D A G +++ +L ++++LR+ C+HP L +G
Sbjct: 418 -YLKMTEMQRTWYQK--ILEKDIDAVNGANGK-RESKTRLLNIVMQLRKCCNHPYLFEG 472
Score = 86 (35.3 bits), Expect = 5.1e-33, Sum P(4) = 5.1e-33
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 358 KSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIA-LSWMVQKETSSLHCSG 416
+++A ++ +L+ G S +P + +R +IA L+W++ SLH +G
Sbjct: 152 RTEAEEDAELLKDEKHGGSAETVFRESPAFIQGT--MRDYQIAGLNWLI-----SLHENG 204
Query: 417 --GILADDQGLGKTISTIALI 435
GILAD+ GLGKT+ TI+ +
Sbjct: 205 ISGILADEMGLGKTLQTISFL 225
Score = 59 (25.8 bits), Expect = 5.1e-33, Sum P(4) = 5.1e-33
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK-----FDVVITTYSI 561
LV+ P S L W E K T + ++VLV G+ + + FDV IT+Y +
Sbjct: 239 LVIVPKSTLDNWKREF-GKWTPE--VNVLVLQGAKEERAALIAERLVDESFDVCITSYEM 295
Query: 562 VSME 565
+ E
Sbjct: 296 ILRE 299
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 288 (106.4 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1101 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1160
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1161 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1220
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1221 KQVTVYRLICKGTIEERILQRAKEKSEI 1248
Score = 142 (55.0 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 646 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 705
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 706 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 760
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 799
K+ +L T ++ Y L+ I+ D + + Q + L+ ++++ R+ C+
Sbjct: 761 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCN 820
Query: 800 HPLL 803
HP L
Sbjct: 821 HPEL 824
Score = 75 (31.5 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 439
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 524 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 566
Score = 52 (23.4 bits), Expect = 6.9e-33, Sum P(4) = 6.9e-33
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 555
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 574 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 630
Query: 556 ITTYSIVSMEV 566
IT+Y +V +V
Sbjct: 631 ITSYQLVVQDV 641
Score = 49 (22.3 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 679 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 735
YS YDPF Y+ ++ P K K KKL+A LK + +R + L E
Sbjct: 189 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRRDEELSSE 241
Score = 42 (19.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSL 945
E+ S +G YN SK+K + + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRKWLKSI 129
Score = 38 (18.4 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKE 773
LK + +DE + SQ E N ++ +E
Sbjct: 126 LKSILLSDESSEADSQSEDNEEEEEEE 152
Score = 37 (18.1 bits), Expect = 5.4e-29, Sum P(4) = 5.4e-29
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 427 KTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 462
K + +I L + ++ED+ + + E L+L E+
Sbjct: 124 KWLKSILLSDESSEADSQSEDNEEEEEEELHLSREE 159
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 288 (106.4 bits), Expect = 7.0e-33, Sum P(4) = 7.0e-33
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1107 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1166
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1167 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1226
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1227 KQVTVYRLICKGTIEERILQRAKEKSEI 1254
Score = 142 (55.0 bits), Expect = 7.0e-33, Sum P(4) = 7.0e-33
Identities = 47/184 (25%), Positives = 87/184 (47%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 711
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 712 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 766
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 799
K+ +L T ++ Y L+ I+ D + + Q + L+ ++++ R+ C+
Sbjct: 767 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCN 826
Query: 800 HPLL 803
HP L
Sbjct: 827 HPEL 830
Score = 75 (31.5 bits), Expect = 7.0e-33, Sum P(4) = 7.0e-33
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 439
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 530 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 572
Score = 52 (23.4 bits), Expect = 7.0e-33, Sum P(4) = 7.0e-33
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 555
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 580 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 636
Query: 556 ITTYSIVSMEV 566
IT+Y +V +V
Sbjct: 637 ITSYQLVVQDV 647
Score = 49 (22.3 bits), Expect = 4.1e-19, Sum P(3) = 4.1e-19
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 679 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 735
YS YDPF Y+ ++ P K K KKL+A LK + +R K + E
Sbjct: 195 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRKDEEVSSE 247
Score = 41 (19.5 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSL 945
E+ S +G YN SK+K + L+S+
Sbjct: 105 ESKSDKGNLYNFSKLKKSRRWLKSI 129
Score = 39 (18.8 bits), Expect = 3.5e-29, Sum P(4) = 3.5e-29
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 446 EDDNKRQLETLNLDEED 462
E+D++ + E LNL E+
Sbjct: 149 EEDDEEEEEELNLSREE 165
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 253 (94.1 bits), Expect = 9.5e-33, Sum P(3) = 9.5e-33
Identities = 51/140 (36%), Positives = 84/140 (60%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+A++F Q MLD++E L S+ Y RLDG++ R K V+ FN P + ++++
Sbjct: 1648 RALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLT 1707
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
K LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V R+ K T+E++I+
Sbjct: 1708 TKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIM 1767
Query: 1123 ALQQKKREMVASAFGEDETG 1142
LQ+ K + ++ + +G
Sbjct: 1768 GLQKFKMNIASTVVNQQNSG 1787
Score = 167 (63.8 bits), Expect = 9.5e-33, Sum P(3) = 9.5e-33
Identities = 56/189 (29%), Positives = 85/189 (44%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K + VLDE IKN ++++A+A + A R L+GTPIQN + +L+S F FL
Sbjct: 1397 LNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMP 1456
Query: 688 DPFAVYKSFCSMIKVPI---------SKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGE 735
K F PI SK G L+A+ K + MLRR K +L
Sbjct: 1457 GFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLS-- 1514
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
+LPPK+I + D ++ Y ++ ++ + +I L +R
Sbjct: 1515 ---DLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMR 1571
Query: 796 QACDHPLLV 804
+ C+HP LV
Sbjct: 1572 KLCNHPALV 1580
Score = 92 (37.4 bits), Expect = 9.5e-33, Sum P(3) = 9.5e-33
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNK-R 451
L ++Q+ ++W+ LH GIL DD GLGKT+ TI +I ++ R ED K R
Sbjct: 1272 LRKYQQDGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIIASDQ--YLRKEDYEKTR 1326
Query: 452 QLET 455
+E+
Sbjct: 1327 SVES 1330
Score = 71 (30.1 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 25/103 (24%), Positives = 44/103 (42%)
Query: 463 NGIQVNGLDLVKQESDYCRVVPNGSSAKS-FNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 521
+GI + + L K C + + K + + R A +L++CP S+ W E
Sbjct: 1292 HGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESR-ALPSLIICPPSLTGHWENE 1350
Query: 522 LRNKVTSKGSLSVLVYHGSSR---TKDPCELAKFDVVITTYSI 561
L V+VY G T P +L+ D+++T+Y +
Sbjct: 1351 FDQYAPF---LKVVVYAGGPTVRLTLRP-QLSDADIIVTSYDV 1389
Score = 42 (19.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 29/109 (26%), Positives = 47/109 (43%)
Query: 742 PKVIMLKQVDFTDEERDFYSQLEINSRDQ-FK-EYAAAGTVK---QNYVNILLMLLRLRQ 796
PK + + V + ERDF Q+ S+ + FK A T++ Q+ VN L L +
Sbjct: 1232 PKGLPEELVASRERERDFIQQMMDPSKAKPFKLPIAIKATLRKYQQDGVNWLAFLNKYHL 1291
Query: 797 ---ACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAIC 842
CD L K + ++ S + +K E+ + + SL IC
Sbjct: 1292 HGILCDDMGLGKTLQTICIIASD-QYLRKEDYEKTRSVESRALPSLIIC 1339
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 288 (106.4 bits), Expect = 9.8e-33, Sum P(5) = 9.8e-33
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1097 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1156
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1157 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1216
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1217 KQVTVYRLICKGTIEERILQRAKEKSEI 1244
Score = 148 (57.2 bits), Expect = 9.8e-33, Sum P(5) = 9.8e-33
Identities = 48/184 (26%), Positives = 88/184 (47%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 643 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 702
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 703 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 757
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYVNILL-MLLRLRQACD 799
K+ +L T ++ Y L+ I+ D + + QN + L+ ++++ R+ C+
Sbjct: 758 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCN 817
Query: 800 HPLL 803
HP L
Sbjct: 818 HPEL 821
Score = 75 (31.5 bits), Expect = 9.8e-33, Sum P(5) = 9.8e-33
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 439
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 521 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 563
Score = 52 (23.4 bits), Expect = 9.8e-33, Sum P(5) = 9.8e-33
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 555
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 571 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 627
Query: 556 ITTYSIVSMEV 566
IT+Y +V +V
Sbjct: 628 ITSYQLVVQDV 638
Score = 49 (22.3 bits), Expect = 6.4e-19, Sum P(3) = 6.4e-19
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 679 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 735
YS YDPF Y+ ++ P K K KKL+A LK + +R + L E
Sbjct: 186 YSAGLLSTYDPF--YEQQRHLLG-P-KKKKFKEEKKLKAKLKKVKKKRRRDEELSSE 238
Score = 42 (19.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 914 YSDSKLVEAPS-CE-GVWYNSSKIKAALEVLQSL 945
YS + ++++ S C+ G YN SK+K + + L+S+
Sbjct: 96 YSLNGVLQSESKCDKGNLYNFSKLKKSRKWLKSI 129
Score = 37 (18.1 bits), Expect = 9.8e-33, Sum P(5) = 9.8e-33
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 259 KTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDI 292
K+R +L LS ES + +D +S DDE ++
Sbjct: 121 KSRKWLKSIL-LSDES---SEADSQSEDDDEEEL 150
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 280 (103.6 bits), Expect = 1.0e-32, Sum P(5) = 1.0e-32
Identities = 61/163 (37%), Positives = 96/163 (58%)
Query: 980 TLDNISDENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTM 1038
++D E+ K+ + +K G + +++ Q TKM+DL+E L + RLDG+
Sbjct: 1290 SMDRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSS 1349
Query: 1039 SVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1098
+ R V D+ T PE+ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAH
Sbjct: 1350 KLEDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAH 1409
Query: 1099 RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1141
R+GQTR V+V RL V+ T+E+R+ + K++E V E +T
Sbjct: 1410 RLGQTRQVTVYRLLVRGTIEERMRD-RAKQKEQVQQVVMEGKT 1451
Score = 149 (57.5 bits), Expect = 1.0e-32, Sum P(5) = 1.0e-32
Identities = 52/202 (25%), Positives = 90/202 (44%)
Query: 625 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 684
A L K+ W ++LDEAQ+IK+ ++ + + R L+GTPIQN++ +L++ F
Sbjct: 827 ANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHF 886
Query: 685 LRYDPFAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTK-------GT 730
+ F + F I + K +L +LK MLRR K G
Sbjct: 887 IMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGD 946
Query: 731 LLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLE-INSRDQFKEYAAAGTVKQNYVNILL 789
++ + + +L + L QV + Y +E + D A+ QN +N ++
Sbjct: 947 KIEIDVLCDLTQRQAKLYQV-LKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVM 1005
Query: 790 MLLRLRQACDHPLLVKGFDSNS 811
+ R+ C+HP L + D +S
Sbjct: 1006 ---QFRKVCNHPDLFERADVDS 1024
Score = 80 (33.2 bits), Expect = 1.0e-32, Sum P(5) = 1.0e-32
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+LA L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 701 ILACTLKEYQLKGLNWLANLYDQGIN---GILADEMGLGKTVQSISVL 745
Score = 49 (22.3 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 266 HLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 325
H++ L P ++ + +S + D+ +I +L D++Q ++ VL +S N A N
Sbjct: 925 HMI-LKPFMLRRVKKNVQSELGDKIEIDVLCDLTQ-RQAKLYQVLKSQISTNYDAIEN-- 980
Query: 326 VALGKPVVTSQHSSYSD 342
A S +S SD
Sbjct: 981 AATNDSTSNSASNSGSD 997
Score = 48 (22.0 bits), Expect = 1.0e-32, Sum P(5) = 1.0e-32
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 552
LVV P S L W E+ +K + +L Y G++ D L KF
Sbjct: 759 LVVTPASTLHNWVNEI-SKFLPQ--FKILPYWGNAN--DRKVLRKF 799
Score = 43 (20.2 bits), Expect = 1.9e-28, Sum P(5) = 1.9e-28
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED-DNKRQLETLNLDEEDN 463
+K+ ++ G + DDQ T+ T+ E ED DN E N ++ DN
Sbjct: 185 KKDAAAAAAIGKAIKDDQTHADTVVTVNG--DENEDGNNGEDEDNDNDNENNNDNDNDN 241
Score = 42 (19.8 bits), Expect = 1.0e-32, Sum P(5) = 1.0e-32
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 74 DAKRQCEDSKNGLPIYGNSLS 94
DA ++ ++++GLP YG ++
Sbjct: 438 DANKRKFNTRHGLPTYGMKMN 458
Score = 40 (19.1 bits), Expect = 3.9e-28, Sum P(5) = 3.9e-28
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 446 EDDNKRQLETLNLDEEDNG 464
+++N+ ++ N DEE+NG
Sbjct: 240 DNENENDNDSDNDDEEENG 258
Score = 39 (18.8 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 778
++ + D ++E D +LE D ++ A+ G
Sbjct: 135 IINEKDADEDEEDDEDELEDGEEDMEEDEASTG 167
Score = 37 (18.1 bits), Expect = 3.4e-32, Sum P(5) = 3.4e-32
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 232 QYFPYAQPSTL-NKKELDGVKEDMEAEIK 259
Q F A S + N+K+ D +ED E E++
Sbjct: 125 QSFKNANLSDIINEKDADEDEEDDEDELE 153
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 284 (105.0 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 57/148 (38%), Positives = 89/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1128 ITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1187
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF + ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1188 RDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1247
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1248 KQVTVYRLICKGTIEERILQRAKEKSEI 1275
Score = 146 (56.5 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 53/205 (25%), Positives = 100/205 (48%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 644 RVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 703
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 704 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 758
Query: 743 KVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNYV---NILLMLLRLRQA 797
K+ +L T +R Y L+ I+ D + ++ G+ +Q + +++ ++++ R+
Sbjct: 759 KIEILTYCQLTSRQRLLYQALKNKISIEDLLQ--SSMGSAQQAHSTTSSLMNLVMQFRKV 816
Query: 798 CDHPLLVKGFDSNSLLRSSVEMAKK 822
C+HP L F+ + RS M+ K
Sbjct: 817 CNHPDL---FERQEI-RSPFHMSLK 837
Score = 77 (32.2 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 375 ISQPNAEASA--PDGVLAVPLLR-HQRIALSWMVQKETSSLHCSGGILADDQGLGKTIST 431
+S P+ +A P + L+ +Q ++W+ ++ GILAD+ GLGKT+ +
Sbjct: 498 LSNPSIQAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 554
Query: 432 IALI--LKER 439
IAL+ L ER
Sbjct: 555 IALLAHLAER 564
Score = 53 (23.7 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC-----------ELAKFDVV 555
L++ P S L W +E V VL Y G+ + + A F VV
Sbjct: 572 LIISPASTLNNWHQEFSRFVPK---FKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVV 628
Query: 556 ITTYSIVSMEV 566
IT+Y +V +V
Sbjct: 629 ITSYQLVVQDV 639
Score = 46 (21.3 bits), Expect = 1.0e-29, Sum P(5) = 1.0e-29
Identities = 28/101 (27%), Positives = 39/101 (38%)
Query: 210 DGSSSRSPID-GRHLSLNLNGSRQYFPYAQPSTL-NKKELDGVKEDMEAEIKTRSMASHL 267
D SS R ID G + +N++ Y + L N KE + + + S
Sbjct: 421 DNSSQRQ-IDIGGGVMVNVSQEDYDSDYYKSQALKNAKEAYQIHQARTRLFDEEAKDSRC 479
Query: 268 LKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSL 308
L S+ S S +S+ P I EDI QP N L
Sbjct: 480 ASLHAASM-SGSGFGESYSLSNPSIQAGEDIPQPTIFNGKL 519
Score = 45 (20.9 bits), Expect = 1.9e-21, Sum P(5) = 1.9e-21
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 516 RQWAEELRNKVTSKGSLSVL 535
RQW EE ++V +G L L
Sbjct: 932 RQWEEEKMSEVKGRGRLEKL 951
Score = 42 (19.8 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 848 PPEDAVVSICGHV 860
P +D VV +C HV
Sbjct: 1024 PRKDRVVCVCAHV 1036
Score = 41 (19.5 bits), Expect = 1.1e-32, Sum P(6) = 1.1e-32
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 167 DSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLN 226
D +G SL S N ++ K++H E+K + C+ DG + ++G L +
Sbjct: 60 DDSDDGLGEGSSLASSNPLLAVKKDHISPEDETKDS--CR---DGETECGTLNGAVLQEH 114
Query: 227 LNGSRQYFPYAQPSTLNKKELDGV 250
+ +++ ++K L G+
Sbjct: 115 KADKASLYNFSRLKK-SRKWLKGI 137
Score = 37 (18.1 bits), Expect = 2.7e-32, Sum P(6) = 2.7e-32
Identities = 21/96 (21%), Positives = 37/96 (38%)
Query: 20 FQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQC 79
+ H + ++ A +E E ++ +SS ++ GG G M+ V DY +
Sbjct: 396 YAHFMGGKQNAGGDCTQE-EILRKLEDNSSQRQIDI-GG---GVMVNVSQEDYDSDYYKS 450
Query: 80 EDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHS 115
+ KN Y + L D + C H+ S
Sbjct: 451 QALKNAKEAYQIHQARTRLFDEEAKDSRCASLHAAS 486
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 261 (96.9 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 58/158 (36%), Positives = 87/158 (55%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G +A++F+Q TK+LD+LE L Y RLDG + R + FNT +
Sbjct: 1255 LQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRI 1314
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+V I+S ++ LG+N+ A V+ D WNP + Q DR HRIGQTR V + R ++T
Sbjct: 1315 TVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHT 1374
Query: 1117 VEDRILALQQKKREMVASAFGE-DETGGQQTRLTVDDL 1153
+E IL +KR++ E D T ++L+V DL
Sbjct: 1375 IESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDL 1412
Score = 140 (54.3 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 57/201 (28%), Positives = 92/201 (45%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL------- 685
W +VLDEA +IKN R+ +A +RR L+GTP+QN + +L+S FL
Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVID 877
Query: 686 --RYDPFAVYKSFCSMIKVPISKNPVKG--YKKLQAVLKTI-----MLRRTKGTLLDGEP 736
+ FA +F P+ K G + + + KT+ +LR L +
Sbjct: 878 GKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADV 937
Query: 737 IINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQ 796
+P K + + +R Y + SR Q K A+G N+++I+ L++LR+
Sbjct: 938 EKQMPAKYEHIVYCKLSKRQRFLYD--DFMSRAQTKATLASG----NFMSIVNCLMQLRK 991
Query: 797 ACDHPLLVKGFDSNSLLRSSV 817
C+HP L F+ +L S V
Sbjct: 992 VCNHPNL---FEVRPILTSFV 1009
Score = 92 (37.4 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 65/290 (22%), Positives = 110/290 (37%)
Query: 153 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE---DLILESKRARFCQEIC 209
N DG +S P DS + S + + E+ E D+ LE+ A E
Sbjct: 464 NQVNDDGRSSTPSSDSND-VLSESDDDMDDELSTSSDEDEEVDADVGLENSPAS--TEAT 520
Query: 210 DGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS----TLNKKELDGVKEDMEAEIKTRSMAS 265
S + I + + NGS + TL+K E E+ + T +S
Sbjct: 521 PTDESLNLIQLKEKYGHFNGSSTVYDSRNKDEKFPTLDKHE----SSSSESSVMTGEESS 576
Query: 266 HLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHS 325
+ S E+ N +D +S D P + + + S+ L L + ++ S
Sbjct: 577 --IYSSSENESQNENDRESD-DKTPSVGLSALFGKGEESDGDLDLDDSEDFTVNSSSVEG 633
Query: 326 VALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAP 385
L K V + +++ + +K D +Q + + P
Sbjct: 634 EELEKDQVDNSAATFERAGDFVHTQNENRDDIKDVEEDAETKVQEEQLSV----VDVPVP 689
Query: 386 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+L L +Q+ L+W+ + H + GILAD+ GLGKTI TI+L+
Sbjct: 690 S-LLRGNLRTYQKQGLNWLASLYNN--H-TNGILADEMGLGKTIQTISLL 735
Score = 62 (26.9 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
L+V PTSVL W E+ K + G VL Y+GS + + F V I +Y +
Sbjct: 749 LIVVPTSVLLNW--EMEFKRFAPG-FKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQL 805
Query: 562 V 562
V
Sbjct: 806 V 806
Score = 47 (21.6 bits), Expect = 5.3e-28, Sum P(4) = 5.3e-28
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 127 EGNDDLFPCWSTVSDSVEPIDEAVGRNSS 155
E +DD+ ST SD E +D VG +S
Sbjct: 485 ESDDDMDDELSTSSDEDEEVDADVGLENS 513
Score = 47 (21.6 bits), Expect = 4.2e-23, Sum P(4) = 4.2e-23
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 695 SFCSMI-KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745
+F M+ K+ + P+ G + + K ++ K +++D E I L +V+
Sbjct: 1120 NFLKMVNKLRCDRRPIFGKNLIDLLTKDRRVKYDKSSIIDNELIKPLQTRVL 1171
Score = 43 (20.2 bits), Expect = 1.3e-16, Sum P(4) = 1.3e-16
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 225 LNLNGSRQYFPYAQPSTLNKKELDG 249
LN + QYF Y+ NK++L+G
Sbjct: 1095 LNFQDANQYFKYS-----NKQKLEG 1114
Score = 37 (18.1 bits), Expect = 5.6e-27, Sum P(4) = 5.6e-27
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 288
+++D E ++K HL K+ +S Q + DD
Sbjct: 431 LRKDEEEQLKRIEGKQHLSKMLEKSTQLLEAQLNQVNDD 469
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 252 (93.8 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 58/155 (37%), Positives = 90/155 (58%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+A+VF Q +MLD++++ + S+Q+ RLDG + R V FN+ P V++++
Sbjct: 1687 RALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLT 1746
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V RL + T+E++IL
Sbjct: 1747 TSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKIL 1806
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+ K + VAS + G T + D L LF
Sbjct: 1807 NLQRFKID-VASTVVNQQNAGLNT-MDTDQLLDLF 1839
Score = 170 (64.9 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 65/237 (27%), Positives = 104/237 (43%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VLDE IKN + +V A + + R LSGTPIQN + +L+S F FL
Sbjct: 1443 LRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMP 1502
Query: 688 DPFAVYKSFCSMIKVPI--------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEP 736
K F PI SK G ++A+ K ++ LRR K +L+
Sbjct: 1503 GFLGTEKVFLDRFAKPIATSRFSKSSKEQEAGALAIEALHKQVLPFLLRRLKEEVLN--- 1559
Query: 737 IINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQ 796
+LPPK+I D ++ ++ + + +E + K + +I L +R+
Sbjct: 1560 --DLPPKIIQNYYCDPSELQKKLFEDFTKKEQKALQEKMGSSE-KADKEHIFQALQYMRR 1616
Query: 797 ACDHPLLV--KGFDSNSLLRSSVEMAKK-LPQERQMYLLNCLEASLAICGICNDPPE 850
C+ P LV +G + ++ ++ K L L+ L+ L CGI +P E
Sbjct: 1617 LCNSPALVVKEGHKQYNEVQQYLQEKKSYLRDVSHAPKLSALKDLLLDCGIGVEPTE 1673
Score = 93 (37.8 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 34/109 (31%), Positives = 49/109 (44%)
Query: 345 GYPGVPLTGLGGMKSKASD-ERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSW 403
G P P GL + D ER + + S+ E P + A L +Q+ ++W
Sbjct: 1274 GIPDPP--GLSEKLLEGRDRERKFMSQMLD--SRKVEEFKLPVAIKA-ELRPYQQEGVNW 1328
Query: 404 MVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQ 452
+ +LH GIL DD GLGKT+ TI ++ + R ED K Q
Sbjct: 1329 LAFLNRYNLH---GILCDDMGLGKTLQTICIVASDH--HMRAEDFAKTQ 1372
Score = 84 (34.6 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 463 NGIQVNGLDLVKQESDYCRVVPNGSS-AKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 521
+GI + + L K C V + A+ F ++ + R +L++CP S+ W +E
Sbjct: 1338 HGILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQRPESRKVP-SLIICPPSLSGHWQQE 1396
Query: 522 LRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSI 561
++ L+ + Y G + R+K LA D+V+T+Y I
Sbjct: 1397 VKQYAPF---LNCVAYVGPPAERSKLQGSLADADIVVTSYDI 1435
Score = 45 (20.9 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 20/94 (21%), Positives = 34/94 (36%)
Query: 169 GQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLN 228
G F L L ++ +K +E + F +E D R +N
Sbjct: 910 GPDFEKLKRLLSPAQRITASKVLNETRVTAENAINFAKEARDTRDMRIKAAAAGALINFG 969
Query: 229 GSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRS 262
P +P L K ++ +K + AE++ RS
Sbjct: 970 A----IP-KKPGNLIKGVMESIKTEESAELQQRS 998
Score = 43 (20.2 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 730 TLLDGEPI-INLP-PKVIMLKQVDFTDEERDFYSQLEINSR--DQFK 772
TL+ P+ +P P + K ++ D ER F SQ+ ++SR ++FK
Sbjct: 1264 TLVKLVPLEAGIPDPPGLSEKLLEGRDRERKFMSQM-LDSRKVEEFK 1309
Score = 37 (18.1 bits), Expect = 8.9e-32, Sum P(4) = 8.9e-32
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 181 SQNQVVHAKEEHEDLILESKRARFCQEICDGSS 213
S+ +EHE LIL ++ +E D ++
Sbjct: 1034 SETPEFERNKEHEGLILSLRKEEDRREHADAAT 1066
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 286 (105.7 bits), Expect = 1.5e-32, Sum P(6) = 1.5e-32
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1105 ITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1164
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1165 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1224
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1225 KQVTVYRLICKGTIEERILQRAKEKSEI 1252
Score = 141 (54.7 bits), Expect = 1.5e-32, Sum P(6) = 1.5e-32
Identities = 48/185 (25%), Positives = 90/185 (48%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 648 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 707
Query: 690 FAVYKSFCSMIKVPI-----SKNPV--KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F ++ F I +K+ + +L +LK MLRR K + + E L
Sbjct: 708 FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDV-ENE----LSD 762
Query: 743 KVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYV---NILLMLLRLRQAC 798
K+ +L T ++ Y L+ S D + ++ GT +Q +++ ++++ R+ C
Sbjct: 763 KIEILMYCQQTSRQKLLYQALKNKISIDDLLQ-SSMGTTQQAQTTTSSLMNLVMQFRKVC 821
Query: 799 DHPLL 803
+HP L
Sbjct: 822 NHPEL 826
Score = 75 (31.5 bits), Expect = 1.5e-32, Sum P(6) = 1.5e-32
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKER 439
+Q ++W+ ++ GILAD+ GLGKT+ +IAL+ L ER
Sbjct: 526 YQLKGMNWLANLYEQGIN---GILADEMGLGKTVQSIALLAHLAER 568
Score = 52 (23.4 bits), Expect = 1.5e-32, Sum P(6) = 1.5e-32
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL-----------AKFDVV 555
L++ P S L W +E V VL Y G+ + A F VV
Sbjct: 576 LIISPASTLNNWHQEFARFVPK---FKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFHVV 632
Query: 556 ITTYSIVSMEV 566
IT+Y +V +V
Sbjct: 633 ITSYQLVVQDV 643
Score = 45 (20.9 bits), Expect = 1.5e-32, Sum P(6) = 1.5e-32
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 23 LLSSEETAT-KPKDEEGEFTTEIACSSSGL 51
LLS + + T P DE+GE E + S L
Sbjct: 133 LLSDDSSDTDSPSDEDGEDEEEFSLSREEL 162
Score = 42 (19.8 bits), Expect = 1.5e-32, Sum P(6) = 1.5e-32
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 59 PGKGSMLKVPAIDYLDAKRQ---CEDSKNGLP-IYGNSLS--NITLGDGKRSAQPC 108
P GS K +I+ L+A+R+ K LP Y S N+ L + K+ A C
Sbjct: 264 PPPGSKKKHMSIEQLNARRRKVWLSIVKKELPKAYKQKASARNLFLTNSKKLAHQC 319
Score = 42 (19.8 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSL 945
E+ S +G YN SK+K + + L+S+
Sbjct: 108 ESKSEKGSLYNFSKLKKSRKWLKSI 132
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(3) = 1.1e-18
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 679 YSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 735
YS YDP+ Y+ ++ P K K KKL+ LK + +R + L E
Sbjct: 191 YSAGLLSTYDPY--YEQQRHLLG-P-KKKKFKEEKKLKGKLKKVKKKRRRDEDLSSE 243
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 248 (92.4 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 54/151 (35%), Positives = 81/151 (53%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G +A++F+Q TK+LD+LE L +Y RLDG + R + FN P++ V I+S
Sbjct: 1382 GHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILST 1441
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
++ LG+N+ A V+ D WNP + Q DR HRIGQ R V + R + T+E I+
Sbjct: 1442 RSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIK 1501
Query: 1124 LQQKKREMVASAFGEDE-TGGQQTRLTVDDL 1153
+KR++ E E T + +V DL
Sbjct: 1502 KANQKRQLDNVVIQEGEFTTDYFGKFSVRDL 1532
Score = 105 (42.0 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685
W ++LDEA +IKN R+ RA + R L+GTP+QN + +L+S FL
Sbjct: 945 WTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFL 997
Score = 97 (39.2 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 252 EDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLG 311
ED+ E +R M S L S SI + S +S D E D +S+P RS+++ G
Sbjct: 686 EDLNQESDSR-MNSLLDSDSVSSISDSESSEESSSDTEMD---QSTVSEPPRSSET---G 738
Query: 312 KTLSMNRSACSNHSVALGKP---VVTSQHSSYSDYPGYPG---VPLTGLGGMKSKASDER 365
+ S +N ++ + ++S + SD + + G G + AS +
Sbjct: 739 SNTGL-ASLFTNGTIVSDEEDDVSISSNFENESDESMNSSDRELEVNGNGKIDKIASTDE 797
Query: 366 LILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGL 425
V + S+ + P +L L +Q+ L+W+ ++ + GILAD+ GL
Sbjct: 798 DDSNVEIVNGSKVK-DVPIPS-LLRGTLRPYQKQGLNWLASLYNNN---TNGILADEMGL 852
Query: 426 GKTISTIALI 435
GKTI TI+L+
Sbjct: 853 GKTIQTISLL 862
Score = 85 (35.0 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 33/115 (28%), Positives = 57/115 (49%)
Query: 714 KLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 773
+L VL+ +LRR K D E +P K + + +R Y + SR + KE
Sbjct: 1060 RLHQVLRPYLLRRLKK---DVEK--QMPGKYEHIVYCRLSKRQRFLYD--DFMSRAKTKE 1112
Query: 774 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ 828
A+G N+++I+ L++LR+ C+HP L F+ ++ +S M + +P Q
Sbjct: 1113 TLASG----NFLSIINCLMQLRKVCNHPDL---FEVRPIV-TSFAMPRSIPSYYQ 1159
Score = 65 (27.9 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS-----SRTKDPCELAKFDVVITTYSI 561
L++ PTSV+ W E+ K + G VL Y+GS + K + F V IT+Y +
Sbjct: 876 LIIVPTSVMLNW--EMEFKKFAPG-FKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQL 932
Query: 562 V 562
V
Sbjct: 933 V 933
Score = 50 (22.7 bits), Expect = 1.4e-27, Sum P(5) = 1.4e-27
Identities = 15/71 (21%), Positives = 37/71 (52%)
Query: 227 LNGSRQYFPYAQPS-----TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSD 281
+NG+++Y + + +L+ +EL D+E ++ ++S++ +++S D
Sbjct: 586 INGNKKYDVNGKSNDENDMSLSVEELRKKYADLETSVEP--LSSNVTSDKERESETSSED 643
Query: 282 CKSHVDDEPDI 292
+S DD+ D+
Sbjct: 644 AESSDDDDTDV 654
Score = 47 (21.6 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 26/106 (24%), Positives = 52/106 (49%)
Query: 892 FSKATLNNSLSQRQPGQEIPTDYSDSK---LVEAPSCEGVWYNSSKIKAA--LEVLQSLA 946
F+ T S +++ +++ + SDS+ L+++ S + + S +++ E+ QS
Sbjct: 670 FATTTFEYSAEEKKLIEDLNQE-SDSRMNSLLDSDSVSSISDSESSEESSSDTEMDQSTV 728
Query: 947 K--PRGN-TVTNHSLRHSF-NGSICCPGDSNDLHGGDTLDNISDEN 988
PR + T +N L F NG+I + +D+ +N SDE+
Sbjct: 729 SEPPRSSETGSNTGLASLFTNGTIVSD-EEDDVSISSNFENESDES 773
Score = 43 (20.2 bits), Expect = 3.9e-11, Sum P(5) = 3.9e-11
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 972 SNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1002
S D G+ L DE +++AA ++ + +
Sbjct: 1550 SGDAKMGNVLAQAEDEEDRVAAGAALKEVAI 1580
Score = 38 (18.4 bits), Expect = 2.3e-26, Sum P(5) = 2.3e-26
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 433 ALILKERPPSFRTE-DDNKRQLETLNLDEEDN 463
A + R P+ E DDN + N ++ DN
Sbjct: 538 AQLTSSREPTVEAESDDNSTTFDD-NTNDSDN 568
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1126 QKKREMVASAFGEDETGG-QQTRLTV---DDLNY 1155
Q E+V F +DET Q L V +++NY
Sbjct: 1159 QSTNELVKRQFNKDETVSFQALNLDVTGCENMNY 1192
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 274 (101.5 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 58/151 (38%), Positives = 92/151 (60%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYR---RLDGTMSVFARDKAVKDFNTLPEVSVMI 1060
G K ++F+Q+TK+LDLLE L++S + + RLDG+ + RD+ + FN P+ V +
Sbjct: 627 GHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFL 686
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
S +A LG+N+VAA V+L+D WNP + QAIDR HRIGQ PV + R +K+++E+
Sbjct: 687 SSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEV 746
Query: 1121 ILALQQKKR--EMVASAFGEDETGGQQTRLT 1149
+++ KR E + G+ + +LT
Sbjct: 747 LISRSGSKRFLERLVIQMGQFKFSNFNKKLT 777
Score = 104 (41.7 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W +++DE +KN + + + L R L+GTP+QN +++L+S F+
Sbjct: 290 LVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILP 349
Query: 688 DPF 690
D F
Sbjct: 350 DIF 352
Score = 69 (29.3 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L W++ + L+ GILAD+ GLGKT+ I+ +
Sbjct: 178 YQMDGLEWLITLFQNGLN---GILADEMGLGKTLQCISFL 214
Score = 68 (29.0 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 698 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 757
++IK+ I + +K L +LK MLRR K ++ NLPPK L + T ++
Sbjct: 387 NLIKLNIQETLIKN---LHTILKPFMLRRLKRDVIK-----NLPPKKEYLLHIPMTKLQK 438
Query: 758 DFYSQLEINSR--DQFKEYAAAGTVKQNY 784
Y +N + D E +K N+
Sbjct: 439 KIYYDA-VNDKLFDSLVETNLKAFIKFNH 466
Score = 64 (27.6 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK----FDVVITTYSI 561
LVV P S L W E+R K K + V Y G+ + ++ +L + ++++T+Y I
Sbjct: 227 LVVVPVSTLSNWYNEIR-KFAPK--IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEI 282
Score = 40 (19.1 bits), Expect = 9.4e-08, Sum P(5) = 9.4e-08
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 886 LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 932
+ LS + K+T N SQ ++ SD ++ E YNS
Sbjct: 798 MELSKIHFKSTQNGQTSQDSAEEDEKILLSDQEIDELLDRSVECYNS 844
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 274 (101.5 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 58/151 (38%), Positives = 92/151 (60%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYR---RLDGTMSVFARDKAVKDFNTLPEVSVMI 1060
G K ++F+Q+TK+LDLLE L++S + + RLDG+ + RD+ + FN P+ V +
Sbjct: 627 GHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFL 686
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
S +A LG+N+VAA V+L+D WNP + QAIDR HRIGQ PV + R +K+++E+
Sbjct: 687 SSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEV 746
Query: 1121 ILALQQKKR--EMVASAFGEDETGGQQTRLT 1149
+++ KR E + G+ + +LT
Sbjct: 747 LISRSGSKRFLERLVIQMGQFKFSNFNKKLT 777
Score = 104 (41.7 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W +++DE +KN + + + L R L+GTP+QN +++L+S F+
Sbjct: 290 LVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILP 349
Query: 688 DPF 690
D F
Sbjct: 350 DIF 352
Score = 69 (29.3 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L W++ + L+ GILAD+ GLGKT+ I+ +
Sbjct: 178 YQMDGLEWLITLFQNGLN---GILADEMGLGKTLQCISFL 214
Score = 68 (29.0 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 698 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 757
++IK+ I + +K L +LK MLRR K ++ NLPPK L + T ++
Sbjct: 387 NLIKLNIQETLIKN---LHTILKPFMLRRLKRDVIK-----NLPPKKEYLLHIPMTKLQK 438
Query: 758 DFYSQLEINSR--DQFKEYAAAGTVKQNY 784
Y +N + D E +K N+
Sbjct: 439 KIYYDA-VNDKLFDSLVETNLKAFIKFNH 466
Score = 64 (27.6 bits), Expect = 2.4e-32, Sum P(5) = 2.4e-32
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK----FDVVITTYSI 561
LVV P S L W E+R K K + V Y G+ + ++ +L + ++++T+Y I
Sbjct: 227 LVVVPVSTLSNWYNEIR-KFAPK--IKVTKYIGTKQERNDIDLLQQQETTNIILTSYEI 282
Score = 40 (19.1 bits), Expect = 9.4e-08, Sum P(5) = 9.4e-08
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 886 LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 932
+ LS + K+T N SQ ++ SD ++ E YNS
Sbjct: 798 MELSKIHFKSTQNGQTSQDSAEEDEKILLSDQEIDELLDRSVECYNS 844
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 286 (105.7 bits), Expect = 2.9e-32, Sum P(5) = 2.9e-32
Identities = 62/160 (38%), Positives = 93/160 (58%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G K ++FSQ T MLD+L + RLDG+MS R+K + FNT PEV
Sbjct: 608 LPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEV 667
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 668 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 727
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
++ +I+ KR++ ++ G Q+ L + N+L
Sbjct: 728 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSK-NFL 766
Score = 117 (46.2 bits), Expect = 2.9e-32, Sum P(5) = 2.9e-32
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 407
Query: 693 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 747
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 408 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 467
Query: 748 KQVDFTDEERDFYSQL 763
+ ++ FY+ +
Sbjct: 468 VYAPLSKKQEIFYTAI 483
Score = 68 (29.0 bits), Expect = 2.9e-32, Sum P(5) = 2.9e-32
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 417 GILADDQGLGKT---ISTIALILKERPP 441
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 244 GILADEMGLGKTVQCIATIALMIQRGVP 271
Score = 58 (25.5 bits), Expect = 2.9e-32, Sum P(5) = 2.9e-32
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL--MLLRLRQACDHPLLVK 805
DF +E SQ++ D+ + ++ VN+ L +++ LR+ C+HP L++
Sbjct: 523 DFPNELEKLISQIQPEV-DRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIE 578
Score = 47 (21.6 bits), Expect = 2.9e-32, Sum P(5) = 2.9e-32
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 66
+ S+N ++S EE + K + E E + S++ V + Q S++K
Sbjct: 132 EDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIK 184
Score = 45 (20.9 bits), Expect = 4.0e-23, Sum P(4) = 4.0e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 731 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 787
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 439
Query: 788 LLMLL 792
L +L
Sbjct: 440 LHQIL 444
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 235 (87.8 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 978 GDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1037
GD L +++ + + + +K + ++FSQ T++LD+LE L QY R+DG
Sbjct: 487 GDHL--VTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGN 544
Query: 1038 MSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDR 1096
RD +++ +N E V ++S +A LG+N+ A V+L D WNP + QA DR
Sbjct: 545 TGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDR 604
Query: 1097 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDL 1153
AHRIGQ + V V R +N +E +++ KK + A + Q+T + D+L
Sbjct: 605 AHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKT-VNKDEL 660
Score = 175 (66.7 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W +++DEA IKN + +++ R ++GTP+QN + +L++ FL
Sbjct: 311 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 370
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+ F+ ++F ++ + + ++L VL+ +LRR K + G LPPK +
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 425
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V + ++ +Y L +D E G ++ +NI + +LR+ C+HP L +G
Sbjct: 426 LKVGMSQMQKQYYKALL--QKDL--EVVNGGGERKRLLNIAM---QLRKCCNHPYLFQG 477
Score = 83 (34.3 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 394 LRHQRIA-LSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LR ++A L+W+++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 194 LRDYQLAGLNWLIRLYENGIN---GILADEMGLGKTLQTISLL 233
Score = 52 (23.4 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR-TKDPCELA-KFDVVITTYSIVSM 564
+VV P S L W E+R ++ L R ++ +A KFD+ +T++ +
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIK 306
Query: 565 E 565
E
Sbjct: 307 E 307
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 242 (90.2 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 53/144 (36%), Positives = 85/144 (59%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+A++F Q MLD++E L S+ Y RLDG++ R V +FN+ P + V++++
Sbjct: 1716 RALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLT 1775
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V RL +N++E++I+
Sbjct: 1776 TMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIM 1835
Query: 1123 ALQQKKREMVASAFGEDETGGQQT 1146
LQ K + + A+ E QT
Sbjct: 1836 GLQ-KFKILTANTVVSAENASLQT 1858
Score = 156 (60.0 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 66/230 (28%), Positives = 104/230 (45%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
VLDE IKN +T+ ++A L+A R LSGTPIQN + +L+S F FL K F
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1541
Query: 697 CSMIKVPI-----SKNPVK----GYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 744
PI +K+ K G ++A+ + ++ LRR K +L +LPPK+
Sbjct: 1542 VQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLK-----DLPPKI 1596
Query: 745 IMLKQVDFTDEE----RDFYSQLEINSRDQFKEYAAAGTVKQNY---VNILLMLLRLRQA 797
+ + + DF ++ + D+ + ++A V +N +I L L+
Sbjct: 1597 TQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNV 1656
Query: 798 CDHPLLVKGFDSNSLLRSSVEMA---KKLPQERQMYLLNCLEASLAICGI 844
C+HP LV S L + + ++A L L L+ L CGI
Sbjct: 1657 CNHPKLVLR-QSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGI 1705
Score = 95 (38.5 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 357 MKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG 416
++++ + +R L S PN + P ++V L +Q+ ++W+ +LH
Sbjct: 1318 LQARKTRDREFLDYLFNPKSIPNYKVPVP---ISVELRCYQQAGINWLWFLNKYNLH--- 1371
Query: 417 GILADDQGLGKTISTIALI 435
GIL DD GLGKT+ TI ++
Sbjct: 1372 GILCDDMGLGKTLQTICIL 1390
Score = 64 (27.6 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGS-LSVLVYHGS--SRTKDPCELA-KFDVVITTYSI 561
+LV+CP ++ W E+ K +GS L L Y+G R K ++ K ++V+ +Y
Sbjct: 1407 SLVICPPTLTGHWVYEVE-KFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDT 1465
Query: 562 VSMEV 566
V ++
Sbjct: 1466 VRKDI 1470
Score = 40 (19.1 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 782 QNYVNILLMLLRLRQACD--HPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEA 837
Q VNILL L++ + D H L+ G ++R + + LPQ L+ L+A
Sbjct: 431 QRIVNILLQLIQHKNEWDVRHGGLL-GLKYVFVVREEL-LPIYLPQSISNILIGLLDA 486
Score = 39 (18.8 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 288
VKED+ ++ + L +LSP ++ H+ D
Sbjct: 1584 VKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKD 1622
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 236 (88.1 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 60/167 (35%), Positives = 95/167 (56%)
Query: 982 DNISDENEKIAAKCSIDSIKL----GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT 1037
D+I + + K+ C +D + GG + ++FSQ TK+LD+L+ + Y RLDG+
Sbjct: 340 DHIVEASGKL---CLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGS 396
Query: 1038 MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1097
+ R A+K+F P + V ++S +A +G+N+ AA V+ D +NP + QAI RA
Sbjct: 397 VRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIARA 455
Query: 1098 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQ 1144
HRIGQ +PV ++RL ++TVE+ I K + +A E GGQ
Sbjct: 456 HRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLT-NAIVE---GGQ 498
Score = 150 (57.9 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 50/178 (28%), Positives = 82/178 (46%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYD--PF 690
W +V+DEA +KN + + L L+GTPIQN++ +LYS F+ D P
Sbjct: 168 WAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQELYSLLSFIEPDIFPR 227
Query: 691 AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
K F + + K K+L +L+ +LRR K E +LP KV ++
Sbjct: 228 KQVKEFVEYYQA-VEKESEPA-KELHNLLQPFLLRRVKS-----EVTADLPKKVEVVLYH 280
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
+ +R +Y + D F+ GT ++ V + +L++LR+ HP L G +
Sbjct: 281 GMSALQRKYYKAILTKDLDAFE----GGTGRK--VMLQNVLIQLRKCVAHPYLFNGVE 332
Score = 78 (32.5 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436
G+ + L +Q ++W+VQ C IL D+ GLGKT TI+L+L
Sbjct: 40 GLTGIKLRPYQLDGVNWLVQCYQVQHGC---ILGDEMGLGKTCQTISLLL 86
Score = 76 (31.8 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC-----ELAKFDVVITTYS 560
+L++CP SVL W EEL + G LS + Y G+ + E + F V++TTY
Sbjct: 98 SLILCPLSVLSNWKEELER--FAPG-LSFVTYVGNKEERYKLQQNLKEQSHFRVLLTTYE 154
Query: 561 I 561
I
Sbjct: 155 I 155
Score = 39 (18.8 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1017 LDLLEASLKDSSIQYRRLDGTMSVFAR-DKAVKDFN 1051
L LE LK + ++ + T+ F R A KDFN
Sbjct: 818 LSALEKGLKKIYVAAKKRNATVH-FPRIGYATKDFN 852
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 225 (84.3 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 42/118 (35%), Positives = 73/118 (61%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G++ ++FSQ +MLD+LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 844 GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNEDASIFVFLLTT 903
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1121
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 904 RVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 961
Score = 163 (62.4 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 54/195 (27%), Positives = 87/195 (44%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
+++ W V+LDE I+N + AC R R LSG+P+QN + +L+S F F+
Sbjct: 624 ISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 683
Query: 688 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 735
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 684 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 740
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
++LP K + TDE+ Y I+S++ ++ + + I L+ LR
Sbjct: 741 MSLSLPDKNEQVLFCRLTDEQHKVYQNF-IDSKEVYR-------ILNGEMQIFSGLVALR 792
Query: 796 QACDHPLLVKGFDSN 810
+ C+HP L G N
Sbjct: 793 KICNHPDLFSGGPKN 807
Score = 97 (39.2 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 444
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 490 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 544
Query: 445 TEDDNKR 451
T N R
Sbjct: 545 TRGSNYR 551
Score = 67 (28.6 bits), Expect = 3.5e-32, Sum P(4) = 3.5e-32
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 559
T++VCPT+V+ QW +E T V + H GS + K+ ++A ++IT+Y
Sbjct: 558 TIIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSFTHKKEKLVRDIAHCHGILITSY 614
Query: 560 SIVSM 564
S + +
Sbjct: 615 SYIRL 619
Score = 40 (19.1 bits), Expect = 2.4e-26, Sum P(4) = 2.4e-26
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 440 PPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQES 477
P S RT++ + Q + ++ EE Q NG+ + ES
Sbjct: 7 PHSSRTQEQDCLQSQDVSESEEATIKQENGVGVELGES 44
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 217 (81.4 bits), Expect = 3.7e-32, Sum P(4) = 3.7e-32
Identities = 49/133 (36%), Positives = 74/133 (55%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G + ++FSQ T+++DLLE L + Y RLDG+ R +K FN
Sbjct: 704 LPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSP 763
Query: 1057 SVM-IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
M ++S +A LGLN+ A +++ D WNP + QA DRAHRIGQ + V V L
Sbjct: 764 YFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIG 823
Query: 1116 TVEDRILALQQKK 1128
++E+ IL ++K
Sbjct: 824 SIEEVILERAKQK 836
Score = 171 (65.3 bits), Expect = 3.7e-32, Sum P(4) = 3.7e-32
Identities = 56/203 (27%), Positives = 93/203 (45%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
L K+ W +++DE +KNH +A+ G R KRR L+GTPIQN++ +L+S FL
Sbjct: 502 LKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLL 561
Query: 687 YDPFAVYKSFCSMIKVPISK---------NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPI 737
F +F P ++ + +L V++ +LRR K + E
Sbjct: 562 PHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEV---EKF 618
Query: 738 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQA 797
LP K ++ + D + ++ +Y Q+ D + +G K + L M +LR+
Sbjct: 619 --LPGKTQVILKCDMSAWQKLYYKQVT----DVGRVGLHSGNGKSKSLQNLTM--QLRKC 670
Query: 798 CDHPLLVKGFDSNSLLRSSVEMA 820
C+HP L G D N + + A
Sbjct: 671 CNHPYLFVGADYNMCKKPEIVRA 693
Score = 88 (36.0 bits), Expect = 3.7e-32, Sum P(4) = 3.7e-32
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q L WMV + + GILAD+ GLGKTI TIALI
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYN---GILADEMGLGKTIQTIALI 425
Score = 69 (29.3 bits), Expect = 3.7e-32, Sum P(4) = 3.7e-32
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELA--KFDVVITTYSIV 562
L++ P +VL W E S+S +Y GS RT+ +A KF+V+IT Y ++
Sbjct: 439 LILAPKAVLPNWENEF---ALWAPSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLI 495
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 236 (88.1 bits), Expect = 4.6e-32, Sum P(4) = 4.6e-32
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 474 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 533
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 534 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 593
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+ K + + ++ + Q + D L LF
Sbjct: 594 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 626
Score = 131 (51.2 bits), Expect = 4.6e-32, Sum P(4) = 4.6e-32
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 230 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 289
Query: 697 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 744
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 290 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 344
Query: 745 IMLKQVDFTDEERDFYSQL-EINSRDQFKEYAAAGTVKQNYV--------NILLMLLRLR 795
I + + Y + ++ E ++ T+ + ++ L LR
Sbjct: 345 IQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLR 404
Query: 796 QACDHPLLV 804
+ C+HP LV
Sbjct: 405 KLCNHPALV 413
Score = 91 (37.1 bits), Expect = 4.6e-32, Sum P(4) = 4.6e-32
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 345 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 404
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 50 GIPDPPNMSAELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 105
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ +I ++
Sbjct: 106 AFLNKYKLH---GILCDDMGLGKTLQSICIL 133
Score = 73 (30.8 bits), Expect = 4.6e-32, Sum P(4) = 4.6e-32
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 563
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 157 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 215
Query: 564 MEV 566
++
Sbjct: 216 NDI 218
Score = 51 (23.0 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 305
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 332 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLK 391
Query: 306 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 340
+ + + L R C NH AL V+T QH +
Sbjct: 392 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 421
Score = 49 (22.3 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
+ E L +G + Q L K + AL+L + P F+T + K ++ +L + +
Sbjct: 384 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAE-KLAVQNSSLHDIQHAP 442
Query: 466 QVNGLDLVKQESDYCRVVPNGSSAKS 491
+++ L KQ C + NGS+++S
Sbjct: 443 KLSAL---KQLLLDCGL-GNGSTSES 464
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 286 (105.7 bits), Expect = 4.6e-32, Sum P(5) = 4.6e-32
Identities = 61/160 (38%), Positives = 94/160 (58%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G K ++FSQ T+MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 609 LPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDV 668
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 669 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 728
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
++ +I+ KR++ ++ G Q+ L N+L
Sbjct: 729 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN-QSKNFL 767
Score = 117 (46.2 bits), Expect = 4.6e-32, Sum P(5) = 4.6e-32
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 349 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 408
Query: 693 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 747
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 409 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 468
Query: 748 KQVDFTDEERDFYSQL 763
+ ++ FY+ +
Sbjct: 469 VYAPLSKKQEIFYTAI 484
Score = 68 (29.0 bits), Expect = 4.6e-32, Sum P(5) = 4.6e-32
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 417 GILADDQGLGKT---ISTIALILKERPP 441
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 245 GILADEMGLGKTVQCIATIALMIQRGVP 272
Score = 58 (25.5 bits), Expect = 4.6e-32, Sum P(5) = 4.6e-32
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL--MLLRLRQACDHPLLVK 805
DF +E SQ++ D+ + ++ VN+ L +++ LR+ C+HP L++
Sbjct: 524 DFPNELEKLISQMQPEV-DRERAVVETNIPVESEVNLKLQNIMMLLRKCCNHPYLIE 579
Score = 45 (20.9 bits), Expect = 4.6e-32, Sum P(5) = 4.6e-32
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 66
+ S+N ++S EE + K + E + + SS+ V + Q S++K
Sbjct: 133 EDESYNIAEVMSKEEILSVAKKNKKENEQKESSSSNLCVEDLQKNKDSNSIIK 185
Score = 45 (20.9 bits), Expect = 6.4e-23, Sum P(4) = 6.4e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 731 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 787
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 381 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 440
Query: 788 LLMLL 792
L +L
Sbjct: 441 LHQIL 445
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 261 (96.9 bits), Expect = 5.0e-32, Sum P(4) = 5.0e-32
Identities = 56/147 (38%), Positives = 93/147 (63%)
Query: 996 SIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE 1055
++ +K G++ ++FSQ+T MLD++E LK QY RLDG+ + R + +NT PE
Sbjct: 809 TLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPE 868
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
+ V ++S +A G+N+ +A V+L D+ NP + QA DR HR+GQTR V V++L K+
Sbjct: 869 IFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTVQVIKLISKD 928
Query: 1116 TVEDRILALQQKKREM---VASAFGED 1139
++ED +L + Q+K ++ + + GED
Sbjct: 929 SIEDCMLRVGQEKLKLEQDMTTDEGED 955
Score = 127 (49.8 bits), Expect = 5.0e-32, Sum P(4) = 5.0e-32
Identities = 52/193 (26%), Positives = 84/193 (43%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
V DE +KN + R + A+ R L+GTP+QN + +L S F+ F+ S
Sbjct: 577 VFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNLLELMSLLNFIMPSMFSSSTSQ 636
Query: 697 CSMIKVPISKNPVKGYKK---LQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVD 751
S + S + K QA ++K +LRR K +L LPPK+ ++
Sbjct: 637 ISKMFSTRSSEEESSFHKDRIAQARLIMKPFILRRVKSEVLK-----ELPPKMEKIEMCP 691
Query: 752 FTDEERDFYSQLEINSRDQFKEYAAAGTV-KQNYVNILLMLLRLRQACDHPLLVKGF-DS 809
+D + Y L FK K+ N+++ +LR+ +HPLL + + S
Sbjct: 692 MSDAQHKLYDIL-------FKRLKKTPNGDKRELCNVMM---QLRKMANHPLLHRQYYTS 741
Query: 810 NSLLRSSVEMAKK 822
+ L S M K+
Sbjct: 742 DKLAAMSKAMLKE 754
Score = 86 (35.3 bits), Expect = 5.0e-32, Sum P(4) = 5.0e-32
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 363 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADD 422
D +++ M I QP S + L +Q I L W++ L GILAD+
Sbjct: 424 DVTQVIEAGMGSIKQPKVLNSN------LKLQAYQLIGLKWLILLHQHKL---SGILADE 474
Query: 423 QGLGKTISTIALI 435
GLGKTI IA +
Sbjct: 475 MGLGKTIQAIAFL 487
Score = 65 (27.9 bits), Expect = 5.0e-32, Sum P(4) = 5.0e-32
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 544
G + ++ F+ + G L+ P+S L W EL S L VL+Y+GS +
Sbjct: 478 GKTIQAIAFLAHLYEKGIKGPHLITVPSSTLDNWVRELGLWCPS---LKVLIYYGSVEDR 534
Query: 545 DPCE------LAKFDVVITTYSI 561
L F+++++TY++
Sbjct: 535 KYLRQDILTGLIDFNIIVSTYNL 557
Score = 54 (24.1 bits), Expect = 6.5e-18, Sum P(3) = 6.5e-18
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 870 LTADDNQCPTRNCKIRLSLS-SVFSKATLNNSLSQRQPGQEIP-TDYSDSK 918
LTA + P + L S SK+T NS +R+ G E+P D S S+
Sbjct: 259 LTAASSHVPEVSSMSALKTQKSALSKSTSKNSSFKRKRGDEMPLNDVSASE 309
Score = 42 (19.8 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 420 ADDQ-GLGKTISTIALILKERPPSFRTEDDNKRQLET-LNLDEEDNGIQVNGLDLVKQES 477
AD Q GKT + + R D+ L+ +N D ED I++ + K +
Sbjct: 41 ADGQFPSGKTSRQVLEDVSSDDEVVRMGKDSASDLQQHINKDMEDKIIKLLEIFPQKSKK 100
Query: 478 DYCRVVPNGSS 488
D V+ N S+
Sbjct: 101 DLLEVIENTST 111
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 281 (104.0 bits), Expect = 5.0e-32, Sum P(5) = 5.0e-32
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + A C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 842 MDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 901
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 902 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 961
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1140
GQT+ V V++L + T+E+ +L + Q+K ++ DE
Sbjct: 962 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE 1001
Score = 118 (46.6 bits), Expect = 5.0e-32, Sum P(5) = 5.0e-32
Identities = 45/196 (22%), Positives = 94/196 (47%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A+ R L+GTP+QN + +L S F+ F+
Sbjct: 621 IFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 680
Query: 692 VYKSFCSMIKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 748
+ + F S K P + + +++ + ++K +LRR K +L LPPK ++
Sbjct: 681 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----LLPPKKDRIE 734
Query: 749 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
++++ YS L N + K+ + +++N + ++++LR+ +HPLL + +
Sbjct: 735 LCAMSEKQEQLYSGL-FN---RLKK--SINNLEKN-TEMCNVMMQLRKMANHPLLHRQYY 787
Query: 809 SNSLLRSSVEMAKKLP 824
+ L+ ++ K P
Sbjct: 788 TPEKLKEMSQLMLKEP 803
Score = 83 (34.3 bits), Expect = 5.0e-32, Sum P(5) = 5.0e-32
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 489 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 531
Score = 60 (26.2 bits), Expect = 5.0e-32, Sum P(5) = 5.0e-32
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 560
L+V P S + W E+ S L+VL Y+GS + ++V++TTY+
Sbjct: 544 LIVVPASTIDNWLREVNLWCPS---LNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 600
Score = 39 (18.8 bits), Expect = 5.0e-32, Sum P(5) = 5.0e-32
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 16 SSFNFQHLLSSEETATKPKDEEGEFTTEIACSSS 49
SS + + ++ +++ +P+ + GE + E A +SS
Sbjct: 210 SSSSEEDDVNDDQSVKQPRGDRGEESNESAEASS 243
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 226 (84.6 bits), Expect = 5.7e-32, Sum P(3) = 5.7e-32
Identities = 64/192 (33%), Positives = 97/192 (50%)
Query: 939 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSID 998
L VL L K NH + F+G+ P + DLH + + + + +
Sbjct: 430 LNVLMQLRK-----CCNHP--YLFDGAEPGPPYTTDLH------LVVNSGKMVVLDKLLP 476
Query: 999 SIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS- 1057
+K G + ++FSQ T++LD+LE + Y RLDG R ++ FN P S
Sbjct: 477 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNE-PNSSK 535
Query: 1058 -VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ A V++ D WNP + QA+DRAHRIGQ + V V R NT
Sbjct: 536 FLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNT 595
Query: 1117 VEDRILALQQKK 1128
VE+RI+ + K
Sbjct: 596 VEERIVERAEMK 607
Score = 189 (71.6 bits), Expect = 5.7e-32, Sum P(3) = 5.7e-32
Identities = 54/187 (28%), Positives = 94/187 (50%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
+L I K W +V+DEA IKN +++++ + R L+GTP+QN + +L+
Sbjct: 272 MLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 331
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
+ FL D F + F + K ++L VL+ +LRR K D E +
Sbjct: 332 ALLNFLLPDVFNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKA---DVEKSL- 387
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
LP K I + V + +R++Y+++ + D +AG K + + +L +L++LR+ C+
Sbjct: 388 LPKKEIKI-YVGLSKMQREWYTKILMKDIDILN---SAG--KMDKMRLLNVLMQLRKCCN 441
Query: 800 HPLLVKG 806
HP L G
Sbjct: 442 HPYLFDG 448
Score = 81 (33.6 bits), Expect = 5.7e-32, Sum P(3) = 5.7e-32
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V L +Q L+W++ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 154 SPSYVKTGKLRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 202
Score = 39 (18.8 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1025 KDSSIQYRRLDGTMSVFARDKAVK 1048
+ SS Q R+ DGT R K +K
Sbjct: 1011 RTSSAQKRKQDGTPDGRGRKKKLK 1034
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 284 (105.0 bits), Expect = 6.0e-32, Sum P(5) = 6.0e-32
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 988 NEKIA---AKCS-ID----SIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1039
NE++A KC +D I+ G+K ++FSQ+T MLD+LE L Y+RLDG
Sbjct: 745 NEQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTP 804
Query: 1040 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1099
V R + + +FN ++ V ++S +A LG+N+ +A H+++ D+ +NP + QA DR HR
Sbjct: 805 VLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHR 864
Query: 1100 IGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
+GQ +PV V RL K TVE +LAL +KK ++
Sbjct: 865 MGQEKPVHVTRLVSKGTVEVGMLALAKKKLQL 896
Score = 115 (45.5 bits), Expect = 6.0e-32, Sum P(5) = 6.0e-32
Identities = 49/180 (27%), Positives = 88/180 (48%)
Query: 636 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS--YFR----FLRY-- 687
V+ DE +KN ++ R ++ K++ L+GTP+QN + +L S YF F +Y
Sbjct: 522 VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCE 581
Query: 688 DPFAVYKSFCSMIKVPISKNPV----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
D + + F + +KN ++ +A+L+ +LRR K +L +LP K
Sbjct: 582 DITHLLQHFKQLGPALDTKNKALYQQDRIEEAKAILQPYILRRLKNQVLG-----SLPSK 636
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ +V+ ++ Y + + + Q +E +G +Y + L+RLRQA +HPLL
Sbjct: 637 SEQIIEVEMKKPQKQLYDNI-VEALQQSEE---SG---DSYGS----LMRLRQAANHPLL 685
Score = 75 (31.5 bits), Expect = 6.0e-32, Sum P(5) = 6.0e-32
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 386 DGVLAVPLLR-------HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+G L +PLL+ +Q I + W++ L+ IL D+ GLGKTI +A +
Sbjct: 380 EGPLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNA---ILGDEMGLGKTIQIVAFL 433
Score = 64 (27.6 bits), Expect = 6.0e-32, Sum P(5) = 6.0e-32
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKDPCELAKFDVVITTYS 560
L+V P+S + W E S + +L Y+GS R + + DV++TTY+
Sbjct: 446 LIVVPSSTIENWIGEFHKWCPS---IQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYN 502
Query: 561 IVS 563
+V+
Sbjct: 503 MVT 505
Score = 41 (19.5 bits), Expect = 6.0e-32, Sum P(5) = 6.0e-32
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 244 KKELDGVKEDMEAEIKT----RSMASHLLKLSPESIQSNSSDCKSHVDDEPDI 292
K+E +G +D E E T +S+ + + K E + SD + +DE D+
Sbjct: 211 KEESEGSGKDSETEEVTMKQGQSLKAAMAKAQKEQKKKAESD-EDWEEDEDDM 262
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 215 (80.7 bits), Expect = 6.6e-32, Sum P(4) = 6.6e-32
Identities = 55/161 (34%), Positives = 85/161 (52%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-- 1057
+K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1182 LKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK-PDSDRF 1240
Query: 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+
Sbjct: 1241 VFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1300
Query: 1118 EDRILALQQKK----REMVASAFGEDETGGQQ-TRLTVDDL 1153
E +L K R ++ S G E+ QQ ++ ++DL
Sbjct: 1301 EREMLDKASLKLGLDRAVLQSMSGNKESSIQQFSKKEIEDL 1341
Score = 214 (80.4 bits), Expect = 6.6e-32, Sum P(4) = 6.6e-32
Identities = 58/180 (32%), Positives = 95/180 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ W VV+DEA +KN ++ + L + + L+GTP+QN +++L+S FL
Sbjct: 973 LREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHFL-- 1030
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+P A + S ++ + +KLQ++LK +MLRR K D E NL PK +
Sbjct: 1031 EP-AQFPSEIEFLREFGDLKTEEQVQKLQSILKPMMLRRLKE---DVEK--NLAPKQETI 1084
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ TD ++ +Y LE N F + T N N+L ++ LR+ C+HP L+ G
Sbjct: 1085 IEVELTDVQKKYYRAILERN----FSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLITG 1140
Score = 72 (30.4 bits), Expect = 6.6e-32, Sum P(4) = 6.6e-32
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +IAL+
Sbjct: 847 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIALL 886
Score = 59 (25.8 bits), Expect = 6.6e-32, Sum P(4) = 6.6e-32
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CE---------LA 550
+++ P S + W E N ++ +VYHGS ++ C+
Sbjct: 899 MIIAPLSTITNWEREFSNWT----DMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAY 954
Query: 551 KFDVVITTYSIVSMEVPK 568
KFD +ITT+ ++ + P+
Sbjct: 955 KFDALITTFEMILSDCPE 972
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 265 (98.3 bits), Expect = 6.7e-32, Sum P(5) = 6.7e-32
Identities = 52/142 (36%), Positives = 84/142 (59%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K + +++ Q T+M+DL+E L +Y RLDG+ + R V ++ T PE+ V
Sbjct: 1441 LKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELFVF 1500
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
++S +A LG+N+ AA V+ D WNP+ + QA+DRAHRIGQ + V+V R + T+E+
Sbjct: 1501 LLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEE 1560
Query: 1120 RILALQQKKREMVASAFGEDET 1141
RI+ ++K E+ ET
Sbjct: 1561 RIVIRAKEKEEVQKVVISGGET 1582
Score = 154 (59.3 bits), Expect = 6.7e-32, Sum P(5) = 6.7e-32
Identities = 50/191 (26%), Positives = 83/191 (43%)
Query: 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690
V W ++LDEAQ+IK+ + ++ + + R L+GTPIQN + +L++ F+ F
Sbjct: 969 VKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLF 1028
Query: 691 AVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
+ F I + K+L +LK MLRR K + L K
Sbjct: 1029 DSHNEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKNVQS-----ELGEK 1083
Query: 744 VIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPL 802
+ D T ++ Y L S + E A G +I+ ++++ R+ C+HP
Sbjct: 1084 IEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGG-DDTVASIMNLVMQFRKVCNHPD 1142
Query: 803 LVKGFDSNSLL 813
L + D S L
Sbjct: 1143 LFEREDVRSPL 1153
Score = 74 (31.1 bits), Expect = 6.7e-32, Sum P(5) = 6.7e-32
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 379 NA-EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
NA E P +L L +Q L+W+ ++ GILAD+ GLGKT+ +I+++
Sbjct: 828 NAFEVKQPK-MLMCKLKEYQLKGLNWLANLYEQGIN---GILADEMGLGKTVQSISVM 881
Score = 60 (26.2 bits), Expect = 6.7e-32, Sum P(5) = 6.7e-32
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKF 552
LV+ P S L W +E+ V L + Y GS TKD L KF
Sbjct: 895 LVIAPASTLHNWQQEITRFVPK---LKCIPYWGS--TKDRKILRKF 935
Score = 51 (23.0 bits), Expect = 6.1e-17, Sum P(3) = 6.1e-17
Identities = 22/63 (34%), Positives = 25/63 (39%)
Query: 153 NSSYHDGCNSFPFKDSGQSFIGLSPSLLSQ---NQVVHAKEEHEDLILESKRARFC-QEI 208
N S PF S F+ SP L Q N VVH +E E K + C QE
Sbjct: 1225 NDSIKSNPEGSPF--SWLRFVDESPQTLFQTFQNPVVHYLDEAE-ASSSLKEEQLCRQEF 1281
Query: 209 CDG 211
C G
Sbjct: 1282 CYG 1284
Score = 48 (22.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 940 EVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDS 999
++ + +P NTV+ H+ R + S+ P ++++ D ++ DE+ A S S
Sbjct: 167 DLYNMVPRPDANTVSPHAARSA--SSLPVPKEASETPFRDASTDLFDEHAHAAPMHSSIS 224
Query: 1000 I 1000
I
Sbjct: 225 I 225
Score = 41 (19.5 bits), Expect = 6.7e-32, Sum P(5) = 6.7e-32
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 175 LSPSLLSQNQVVHAKEEHE 193
LSP+ SQ+Q+ H + +H+
Sbjct: 271 LSPNS-SQSQITHNRRKHK 288
Score = 40 (19.1 bits), Expect = 2.1e-20, Sum P(5) = 2.1e-20
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 553 DVVITTYSIVSMEVPKQPL 571
D++I ++ + +P++PL
Sbjct: 1384 DLIINNQAVSKLPIPRKPL 1402
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 272 (100.8 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 57/154 (37%), Positives = 93/154 (60%)
Query: 987 ENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDK 1045
++ K+ C + K G++ +VFSQ+ +D+LE L++ +++ RLDGT SV R
Sbjct: 924 DSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQS 983
Query: 1046 AVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105
+ F+ ++ V ++S KA G+N+ A V++ D +NP + QA +RAHR+GQTR
Sbjct: 984 IMDTFHENTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTRE 1043
Query: 1106 VSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1139
V V+RL K+T+E++I AL Q K + + GED
Sbjct: 1044 VEVIRLVTKDTIEEQIYALGQTKLALDQAVAGED 1077
Score = 140 (54.3 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 57/202 (28%), Positives = 96/202 (47%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS- 695
V DE +K+ + + +RA+ R L+GTP+QN + +L S F+ F K
Sbjct: 692 VYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQNNLQELASLLGFILPKVFQERKDD 751
Query: 696 ----FCSMIK-VPISKNPVKGYKKLQ---AVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F + K V S + + ++++ ++LK +LRR K +I+LP K+ +
Sbjct: 752 LQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFVLRRKK------HQVIDLPAKISRV 805
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY-VNILLMLLRLRQACDHPLLVKG 806
+ + +R+ Y E N + E AAG N NIL+ +LRQA HPLL +
Sbjct: 806 EYCEMNAAQREIYEH-EKNEVKKLLEDRAAGKKTGNKSANILM---KLRQAAIHPLLHRR 861
Query: 807 FDSNSLLRSSVEMAKKLPQERQ 828
++ +L +M+K QE +
Sbjct: 862 HYNDKIL---TKMSKACLQEEK 880
Score = 82 (33.9 bits), Expect = 7.6e-32, Sum P(3) = 7.6e-32
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 352 TGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLA--VPLLRHQRIALSWMVQKET 409
+G+G S+ SDE G A + G++A + + +Q + ++W+
Sbjct: 525 SGIGTPASQPSDE----DSDGPGSRSRKARFISQPGIMAEDLKMKNYQIVGINWLSLLFE 580
Query: 410 SSLHCSGGILADDQGLGKTISTIALI 435
+ L C ILADD GLGKT IA +
Sbjct: 581 NELSC---ILADDMGLGKTCQVIAFL 603
Score = 65 (27.9 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 28/112 (25%), Positives = 51/112 (45%)
Query: 465 IQVNGLDLVKQESDYCRVVPN---GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAE 520
+ +N L L+ + C + + G + + F+ + G LVV P+S + W
Sbjct: 570 VGINWLSLLFENELSCILADDMGLGKTCQVIAFLAHLYEKGIKGPHLVVVPSSTIENWLR 629
Query: 521 ELRNKVTSKGSLSVLVYHGS----SRTKDPCELAKFD--VVITTYSIVSMEV 566
E + + LSV+ Y+ ++ ++ E + D VVITTY+I +V
Sbjct: 630 EFQKFCPT---LSVMPYYADQNVRAQIREQIEGNRDDINVVITTYTIAKGKV 678
Score = 47 (21.6 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 25/101 (24%), Positives = 43/101 (42%)
Query: 813 LRSSVE-MAKKLPQERQMYLLNCLEASLAICGICNDPPE--DAVVSICGHVFCNQCICER 869
+R VE M K LP++ + +C++A LA G D E + GH ++
Sbjct: 224 VRIKVERMLKVLPRKS---VHDCVQALLAKKGSYEDALECLASTEDQNGHADSSEDELST 280
Query: 870 LTADDNQCPTR-NCKIRLSLSSVFSKATLNNSLSQRQPGQE 909
+ P + N K R + ++ L S Q+QP ++
Sbjct: 281 IKKTSPVAPAKQNIKARGRIQDKWTAPNLPKSTLQKQPEED 321
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 223 (83.6 bits), Expect = 9.4e-32, Sum P(4) = 9.4e-32
Identities = 55/166 (33%), Positives = 88/166 (53%)
Query: 970 GDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK--AIVFSQWTKMLDLLEASLKDS 1027
G D++ LD I + K+ + ++L K ++FSQ +MLD+L L
Sbjct: 920 GYGGDINDNSKLDKIILSSGKLVILDKL-LVRLRETKHRVLIFSQMVRMLDILAEYLSLR 978
Query: 1028 SIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086
Q++RLDG+ R +A+ FN + ++S +A LG+N+ A V++ D WN
Sbjct: 979 GFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWN 1038
Query: 1087 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132
P + QA+ RAHRIGQ V++ R +VE+ IL ++ KR+MV
Sbjct: 1039 PQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEIL--ERAKRKMV 1082
Score = 184 (69.8 bits), Expect = 9.4e-32, Sum P(4) = 9.4e-32
Identities = 53/182 (29%), Positives = 93/182 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L+K+ W +++DEA +KN Q+ A K + ++GTP+QN++++L++ FL
Sbjct: 749 LSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 808
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F F K S N + L L+ +LRR + D E +LPPK+ +
Sbjct: 809 GKFKNKDEFVENYKNLSSFNESE-LANLHLELRPHILRRV---IKDVEK--SLPPKIERI 862
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ + ++ +Y LE N D K G V+ N V++L +++ L++ C+HP L +
Sbjct: 863 LRVEMSPLQKQYYKWILERNFHDLNK-----G-VRGNQVSLLNIVVELKKCCNHPFLFES 916
Query: 807 FD 808
D
Sbjct: 917 AD 918
Score = 77 (32.2 bits), Expect = 9.4e-32, Sum P(4) = 9.4e-32
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 488 SAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 547
S F++ + P LVV P S L WA+E R + ++++VY G+ +++ C
Sbjct: 660 SVSMLGFLQNTQQIPGP-FLVVVPLSTLANWAKEFRKWLPG---MNIIVYVGTRASREVC 715
Query: 548 EL------------AKFDVVITTYSIV 562
+ KF+ ++TTY +V
Sbjct: 716 QQYEFYNEKKVGRPIKFNALLTTYEVV 742
Score = 67 (28.6 bits), Expect = 9.4e-32, Sum P(4) = 9.4e-32
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 359 SKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGI 418
S A +++ Q +G + P+ ++ L +Q L+++V S L+ + I
Sbjct: 591 SIAVQGKMVEQQRTKGKASLRKLDEQPEWLIGGTLRDYQLEGLNFLVN---SWLNDTNVI 647
Query: 419 LADDQGLGKTISTIALI 435
LAD+ GLGKT+ +++++
Sbjct: 648 LADEMGLGKTVQSVSML 664
Score = 49 (22.3 bits), Expect = 6.6e-30, Sum P(4) = 6.6e-30
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 407 KETSSLHCSGGILADDQGLG---KTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 463
K S LHC L+D Q L K ++ + +E +RT ++ ++E ++ +E +
Sbjct: 469 KGQSHLHCQWKTLSDLQNLSGFKKVLNYTKKVTEEI--RYRTAL-SREEIEVNDVSKEMD 525
Query: 464 GIQVNGLDLVKQESDYCRVV 483
LD++KQ S R++
Sbjct: 526 ------LDIIKQNSQVERII 539
Score = 49 (22.3 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 29/129 (22%), Positives = 56/129 (43%)
Query: 868 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQ-EIPTD--YSDS--KLVEA 922
E ++DN R+ K+ + +N +++ Q GQ ++P D SD + E
Sbjct: 126 EAYHSEDNHSNDRSEKLDSENENDNENEEEDNEMNKHQSGQADVPADEMLSDEYYEQDED 185
Query: 923 PSCEGVWYNS-SKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDT- 980
+ V Y S + + ++ + N+ T+ ++ + + S DSN H GD
Sbjct: 186 NQSDHVHYKGYSNPTNSRSLPKAGSAVHSNSRTSRAIHKNIHYS-----DSNHDHNGDAD 240
Query: 981 LDNISDENE 989
+D +E+E
Sbjct: 241 MDYEEEEDE 249
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 280 (103.6 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 58/152 (38%), Positives = 91/152 (59%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G K ++FSQ T +LD+L +Y RLDG+MS RD+ +K F++ PEV
Sbjct: 624 LPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEV 683
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ +A V++ D WNP + QA DR HRIGQT+PV V RL NT
Sbjct: 684 FLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANT 743
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRL 1148
++++IL KR++ +++ G + L
Sbjct: 744 IDEKILERASAKRKLEKMVIHKNKFKGSKAEL 775
Score = 121 (47.7 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 38/139 (27%), Positives = 66/139 (47%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W +++DE IKN ++ + L + L+GTP+QN + +L+S FL
Sbjct: 353 LQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLSELWSLLNFLLP 412
Query: 688 DPFAVYKSFCSMIKVPI----SKNPVKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLP 741
D F KSF S + ++N V ++ Q +L + L T L L + + +P
Sbjct: 413 DVFDDLKSFESWFDISTITSDAENIVANERE-QNILHMLHLILTPFLLRRLKSDVTLEVP 471
Query: 742 PKVIMLKQVDFTDEERDFY 760
PK ++ T+++ FY
Sbjct: 472 PKKEIVVYAPLTNKQEAFY 490
Score = 65 (27.9 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAK 551
LVV P S L W E + + T + +SVL+YHG K+ +L K
Sbjct: 285 LVVAPLSTLPNWISEFK-RFTPE--VSVLLYHGPQ--KERLDLVK 324
Score = 64 (27.6 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 417 GILADDQGLGKTISTIALI 435
GILAD+ GLGKTI IA I
Sbjct: 254 GILADEMGLGKTIQCIAHI 272
Score = 52 (23.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 230 SRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKL-SPESIQSN 278
SR+ Y +P+T + K+L+ E ++ E+ +++ ++ ++ + P Q N
Sbjct: 524 SRKVVNYTEPNTDSMKDLEKYLEKVQQELDSQASSTPVVNVFMPVDAQVN 573
Score = 46 (21.3 bits), Expect = 3.8e-24, Sum P(5) = 3.8e-24
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 723 MLRRTKGTLLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGT 779
ML LL G P+ N ++ L D D+ + F S +I++ E A
Sbjct: 382 MLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVANE 441
Query: 780 VKQNYVNILLMLL 792
+QN +++L ++L
Sbjct: 442 REQNILHMLHLIL 454
Score = 45 (20.9 bits), Expect = 4.8e-24, Sum P(5) = 4.8e-24
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 742 PKVIMLKQVDFTDEERDFYSQLE--INSRDQFKEYAAAGTVKQNY-------VNILL--M 790
PK K V++T+ D LE + Q + A+ T N VN+ L +
Sbjct: 520 PKRRSRKVVNYTEPNTDSMKDLEKYLEKVQQELDSQASSTPVVNVFMPVDAQVNLKLQNI 579
Query: 791 LLRLRQACDHPLLVK 805
L+ L++ C+H L++
Sbjct: 580 LMLLKRCCNHAYLIE 594
Score = 42 (19.8 bits), Expect = 9.8e-32, Sum P(5) = 9.8e-32
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 273 ESIQSNSSDC-KSHVDDEPDICILEDISQPARSNQSLVLGKTL 314
E +S S C K + +EP+ +E+ + ++ +V+ K +
Sbjct: 7 EETRSISPHCPKPNESEEPEGTTIEETTMEKSKHEEMVITKEM 49
Score = 42 (19.8 bits), Expect = 7.5e-07, Sum P(5) = 7.5e-07
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1061 MSLKAASLGLNMVAAC-HVLLLDLWWNPTTEDQAID 1095
++LK ++ + + C H L++ +PTT D ID
Sbjct: 572 VNLKLQNILMLLKRCCNHAYLIEYPLDPTTGDFKID 607
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 178 (67.7 bits), Expect = 1.0e-31, Sum P(5) = 1.0e-31
Identities = 68/230 (29%), Positives = 111/230 (48%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL K+ W+RV LDEAQ I++ + A+ + W ++GTP++ + DL FLR
Sbjct: 409 PLIKISWWRVCLDEAQMIESGISNAAKVARLIPRHIAWAVTGTPLRKDVTDLLGLLLFLR 468
Query: 687 YDPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKV 744
Y+PF ++K C P+ L ++ TI LR +K + + ++LPP+
Sbjct: 469 YEPFCGPIWKRLCDATFKPV----------LARIVNTITLRHSKNFIREE---LHLPPQK 515
Query: 745 IMLKQVDFTDEERDFYSQL-EINSRDQFKEYAAAGTVKQNYVN------ILLM---LLRL 794
++ V FT E Y QL E D + ++G+ + N N I M L+RL
Sbjct: 516 RIVITVPFTAVEEQSYRQLYEEMCEDCGLD--SSGSPRNNDWNPNDPSVIDRMRSWLVRL 573
Query: 795 RQACDHPL--LVKGFDS-NSLLRSSVEMAKKLPQERQMYLLNCLEASLAI 841
RQ+C +P K F + N LRS ++ + + + L++ E SL +
Sbjct: 574 RQSCLYPTGNRRKVFAAGNGPLRSVNDVLEVMIDQNDA-LIHAEERSLLL 622
Score = 170 (64.9 bits), Expect = 1.0e-31, Sum P(5) = 1.0e-31
Identities = 46/126 (36%), Positives = 65/126 (51%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G ++IVFSQ+ LD L + + I Y +D + + +K KD P + ++
Sbjct: 1185 GAQSIVFSQYKGFLDYLANAFRRFKIGYSSVDESDGI---EKFKKD----PGIECFLLHA 1237
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA S GLN+V A HV L + N E QAI R HRIGQ RP +V + +TVE I
Sbjct: 1238 KAHSSGLNLVNATHVFLCEPLINTAIELQAIARVHRIGQHRPTTVWMYLISDTVEKSIYD 1297
Query: 1124 LQQKKR 1129
+ +R
Sbjct: 1298 ISVSRR 1303
Score = 90 (36.7 bits), Expect = 1.0e-31, Sum P(5) = 1.0e-31
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 501 RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR--TKDPCELAKF----DV 554
RP+ TL++ P +L QW +E+ L V Y G R T EL + DV
Sbjct: 318 RPSGATLIITPPVILGQWKQEIELHAPK---LQVFHYTGIQRHPTLSDQELVELMADNDV 374
Query: 555 VITTYSIVSMEV 566
V+TTY++++ E+
Sbjct: 375 VLTTYNVLAREI 386
Score = 82 (33.9 bits), Expect = 1.0e-31, Sum P(5) = 1.0e-31
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 841 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQ-CPTRNCKIRLSLSSVF 892
IC IC E V+++CGH +C C+ RL ++ CP CK RL + +
Sbjct: 1066 ICIICQGTFEIGVLTVCGHKYCKDCL--RLWWRQHRTCPV--CKKRLGANDFY 1114
Score = 74 (31.1 bits), Expect = 1.0e-31, Sum P(5) = 1.0e-31
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 413 HCSGGILADDQGLGKTISTIALILKER 439
H GG+LA++ GLGKT+ I+L+ R
Sbjct: 274 HLKGGVLAEEMGLGKTVEMISLMCLNR 300
Score = 45 (20.9 bits), Expect = 8.8e-29, Sum P(5) = 8.8e-29
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 381 EASAPD--GVLAVPLLRHQRIALSWMVQKETSSLHCSGGIL 419
E SAP + L QR A+ W++ +E L+ +G ++
Sbjct: 187 ELSAPVKCDLTECELFPFQRRAVRWLLNREGKELNSNGQVV 227
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 277 (102.6 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 58/160 (36%), Positives = 94/160 (58%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 845 MDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 904
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 905 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 964
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1140
GQT+ V V++L + T+E+ +L + Q+K ++ DE
Sbjct: 965 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE 1004
Score = 119 (46.9 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 45/196 (22%), Positives = 94/196 (47%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A+ R L+GTP+QN + +L S F+ F+
Sbjct: 624 IFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 683
Query: 692 VYKSFCSMIKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 748
+ + F S K P + + +++ + ++K +LRR K +L LPPK ++
Sbjct: 684 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----LLPPKKDQIE 737
Query: 749 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
++++ YS L N + K+ + +++N + ++++LR+ +HPLL + +
Sbjct: 738 LCAMSEKQEQLYSGL-FN---RLKK--SINNLEKN-TEMCNVMMQLRKMANHPLLHRQYY 790
Query: 809 SNSLLRSSVEMAKKLP 824
+ L+ ++ K P
Sbjct: 791 TAEKLKEMSQLMLKEP 806
Score = 83 (34.3 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 492 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 534
Score = 57 (25.1 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 560
L+V P S + W E+ + L+VL Y+GS + ++V++TTY+
Sbjct: 547 LIVVPASTIDNWLREVNLWCPT---LNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 603
Score = 38 (18.4 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 943 QSLAKPRGNT--VTNHSLRHSFN 963
QSL KPRG+ +N S S N
Sbjct: 225 QSLKKPRGDRREESNESAEASSN 247
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 223 (83.6 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 53/184 (28%), Positives = 92/184 (50%)
Query: 939 LEVLQSLAKPRGNTVTNHSLRHSFNGSIC-CPGDSNDLHGGDTLDNISDENEKIAAKCSI 997
++V L R + NH S I C D+ DL D + I + +
Sbjct: 788 MQVFSGLVALR--KICNHPDLFSGGPKILKCVPDA-DLEEADQFGYWKRSGKMIVVESLL 844
Query: 998 DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS 1057
G + + F+Q +ML +LE L+D + Y R+DGT ++ +R + +N +
Sbjct: 845 KIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNEDKSIF 904
Query: 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117
+ +++ + +G+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+
Sbjct: 905 IFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTI 964
Query: 1118 EDRI 1121
E++I
Sbjct: 965 EEKI 968
Score = 164 (62.8 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 54/186 (29%), Positives = 84/186 (45%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 635 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGT 694
Query: 693 YKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F VPI+ +PV+ YK L+ + +LRR K D + ++L
Sbjct: 695 LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKA---DVKMSLSL 751
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 800
P K + TDE+R Y I+S++ ++ + + + L+ LR+ C+H
Sbjct: 752 PDKNEQVLFCRLTDEQRQVYQNF-IDSKEVYQ-------ILNGDMQVFSGLVALRKICNH 803
Query: 801 PLLVKG 806
P L G
Sbjct: 804 PDLFSG 809
Score = 97 (39.2 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 444
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 496 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 550
Query: 445 TEDDNKR 451
T N R
Sbjct: 551 TRGSNYR 557
Score = 64 (27.6 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS---SRTKDPCELAK-FDVVITTY 559
T++VCP +V+ QW +E T V + H GS + K E+A ++IT+Y
Sbjct: 564 TVIVCPATVMHQWVKEFH---TWWPPFRVAILHETGSYTNKKVKLIREIASCHGILITSY 620
Query: 560 SIVSM 564
S + +
Sbjct: 621 SYIRL 625
Score = 44 (20.5 bits), Expect = 1.2e-31, Sum P(5) = 1.2e-31
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 270 LSPESIQSNSSDCKSHVDDEPD 291
L PE+++ SH +++ D
Sbjct: 381 LEPEAVEEEEEQASSHAENDSD 402
Score = 44 (20.5 bits), Expect = 2.2e-13, Sum P(5) = 2.2e-13
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 935 IKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGG-DTLDNISDENEKIAA 993
+K L + +S + + ++H RH N S S + G +T D S +
Sbjct: 1045 LKGGLHLKKSSSPKYSKSSSSHLTRHRANSSEAIE-TSEEAKGNLETFDQNSYAKDNAET 1103
Query: 994 KCSIDSIKLGGEKAI 1008
I+S+ ++++
Sbjct: 1104 ATDINSVNKSKQESL 1118
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 277 (102.6 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 60/171 (35%), Positives = 98/171 (57%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 849 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 908
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 909 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 968
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVD 1151
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + + D
Sbjct: 969 GQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTVDE--GDEGSMPAD 1017
Score = 117 (46.2 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 43/196 (21%), Positives = 93/196 (47%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 628 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 687
Query: 692 VYKSFCSMIKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 748
+ + F S K P + + +++ + ++K +LRR K +L LPPK ++
Sbjct: 688 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDRIE 741
Query: 749 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
++++ Y +N ++ K+ + +++N + ++++LR+ +HPLL + +
Sbjct: 742 LCAMSEKQEQLY----MNLFNRLKK--SINNMEKN-TEMCNVMMQLRKMANHPLLHRQYY 794
Query: 809 SNSLLRSSVEMAKKLP 824
+ L+ ++ K P
Sbjct: 795 TAEKLKEMSQLMLKEP 810
Score = 83 (34.3 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 496 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 538
Score = 57 (25.1 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 560
L+V P S + W E+ + L VL Y+GS + +++V++TTY+
Sbjct: 551 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYN 607
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 267 (99.0 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 55/150 (36%), Positives = 90/150 (60%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ IK G++ ++FSQ+T MLD++E L+ +Y RLDG + R + +FNT ++
Sbjct: 840 LSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDI 899
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S KA LG+N+ +A V+L D+ NP + QA DR HR+GQT+ V V++L K T
Sbjct: 900 FIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGT 959
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQT 1146
+E+ +L + Q+K + D TG + T
Sbjct: 960 IEESMLKISQQKLRLEQDMTTND-TGDEGT 988
Score = 126 (49.4 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 50/195 (25%), Positives = 86/195 (44%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
V DE +KN + L A+ R L+GTP+QN + +L S F+ F+
Sbjct: 603 VFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 662
Query: 692 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
+ + F S K + + + A ++K +LRR K +L LPPK +K
Sbjct: 663 IKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKSEVLK-----QLPPKQDKIKF 717
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 809
+ ++ YS L +N + K+ A N+++ LR+ +HPLL + + +
Sbjct: 718 CQMSKKQEQLYSDL-LN---KLKKSIDATEKNSELCNVMM---HLRKMANHPLLHRQYYT 770
Query: 810 NSLLRSSVEMAKKLP 824
LR+ ++ K P
Sbjct: 771 ADRLRTMSKLMLKEP 785
Score = 72 (30.4 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q+I L+W+ ++ ILAD+ GLGKT+ IA +
Sbjct: 477 YQKIGLNWLALLHKHKVNM---ILADEMGLGKTVQAIAFL 513
Score = 69 (29.3 bits), Expect = 1.8e-31, Sum P(4) = 1.8e-31
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 560
LVV P S + W E S +++L+Y+GS + ++ +F+V++TTY+
Sbjct: 526 LVVVPASTMDNWIREFNQWCPS---MNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYN 582
Score = 37 (18.1 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 887 SLSSVFSKATLNNSLSQ 903
S S+F K T +N LS+
Sbjct: 399 SWESLFEKMTKSNGLSE 415
Score = 37 (18.1 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 938 ALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSND 974
ALE L+ A+ + + N + + NG + ND
Sbjct: 255 ALEALKLFAEDETDALQNAAKKEVSNGKEFSRSNKND 291
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 238 (88.8 bits), Expect = 2.0e-31, Sum P(5) = 2.0e-31
Identities = 50/126 (39%), Positives = 73/126 (57%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G + ++F+Q TK+LD+LE L +Y RLDG + R + FN ++ V I+S
Sbjct: 1007 GHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILST 1066
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
++ LG+N+ A V+ D WNP + QA DR+HRIGQTR V + RL + TVE +L
Sbjct: 1067 RSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLR 1126
Query: 1124 LQQKKR 1129
+KR
Sbjct: 1127 RANQKR 1132
Score = 153 (58.9 bits), Expect = 2.0e-31, Sum P(5) = 2.0e-31
Identities = 53/189 (28%), Positives = 87/189 (46%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL- 685
P + W ++LDEA +IKN R+Q ++ A+ R L+GTP+QN + +L+S FL
Sbjct: 563 PFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLM 622
Query: 686 ------RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTI-----MLRRTKGTLLDG 734
FA K F P+ + +G + T+ +LR L
Sbjct: 623 PAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHRVLRPYLLRRLKT 682
Query: 735 EPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRL 794
E +P K + + +R Y IN R + +E A+G N+++I+ L++L
Sbjct: 683 EVEKQMPAKYEHVVYCQLSKRQRFLYDDF-IN-RARTREILASG----NFMSIINCLMQL 736
Query: 795 RQACDHPLL 803
R+ C+HP L
Sbjct: 737 RKVCNHPNL 745
Score = 99 (39.9 bits), Expect = 2.0e-31, Sum P(5) = 2.0e-31
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 358 KSKASDERLILQVAMQGISQ------PNAEASAPDGVLAVPLL------RHQRIALSWMV 405
K + +D+ L + ++ GIS+ PN + VP L +Q+ L W+
Sbjct: 400 KRRVNDDGLARKKSIAGISEQRKFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLT 459
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALI 435
S+ + GILAD+ GLGKTI TIAL+
Sbjct: 460 ALHDSN---TNGILADEMGLGKTIQTIALL 486
Score = 55 (24.4 bits), Expect = 2.0e-31, Sum P(5) = 2.0e-31
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRTKDPCELAKFD---VVITTYSI 561
L++ PTSV+ W E + + +L Y+G+ R + K D V IT+Y +
Sbjct: 500 LIIVPTSVMLNWEMEFKKFLPG---FKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQL 556
Query: 562 V 562
V
Sbjct: 557 V 557
Score = 42 (19.8 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 294 ILEDISQPARSNQSLVLGKTLSM-N-----RSACSNHSVALGKPVVTS 335
+ +D AR+ + L G +S+ N R C++ ++ +P+VTS
Sbjct: 707 LYDDFINRARTREILASGNFMSIINCLMQLRKVCNHPNLHEERPIVTS 754
Score = 40 (19.1 bits), Expect = 2.0e-31, Sum P(5) = 2.0e-31
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 109 TYSHSHSSRTKQMVFAKDEGNDDL 132
TY S ++ + K EG+ DL
Sbjct: 2 TYEESEKNKNGLSSYIKKEGSSDL 25
Score = 38 (18.4 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 737 IINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQ 770
+ +L +VI++K+ D TD ++ ++N DQ
Sbjct: 343 VSDLDGEVIVMKKEDITD---GVSTKKDLNDGDQ 373
Score = 37 (18.1 bits), Expect = 5.1e-13, Sum P(3) = 5.1e-13
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 901 LSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 938
L + IP Y D+ L +N K++A+
Sbjct: 104 LKKAPSSNNIPISYRDNLLSHVNGYARSMHNDRKVRAS 141
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 223 (83.6 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 42/118 (35%), Positives = 73/118 (61%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G++ ++FSQ +MLD+LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 855 GQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTT 914
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1121
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 915 RVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
Score = 166 (63.5 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 54/195 (27%), Positives = 87/195 (44%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 635 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 694
Query: 688 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 735
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 695 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 751
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
++LP K + TDE+ Y ++S++ ++ + + I L+ LR
Sbjct: 752 MSLSLPDKNEQVLFCRLTDEQHKVYQNF-VDSKEVYR-------ILNGEMQIFSGLIALR 803
Query: 796 QACDHPLLVKGFDSN 810
+ C+HP L G N
Sbjct: 804 KICNHPDLFSGGPKN 818
Score = 97 (39.2 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 444
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 501 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 555
Query: 445 TEDDNKR 451
T N R
Sbjct: 556 TRGSNYR 562
Score = 65 (27.9 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 559
T++VCPT+V+ QW +E T V + H GS + K+ ++A ++IT+Y
Sbjct: 569 TVIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSYTHKKEKLIRDVAHCHGILITSY 625
Query: 560 SIVSM 564
S + +
Sbjct: 626 SYIRL 630
Score = 38 (18.4 bits), Expect = 2.4e-31, Sum P(5) = 2.4e-31
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 232 QYFPYAQPSTLNKKELDGVKEDMEAE 257
+YFP + E++G + D+ +
Sbjct: 373 EYFPTEEEEEEEDDEVEGAEADLSGD 398
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 230 (86.0 bits), Expect = 3.0e-31, Sum P(6) = 3.0e-31
Identities = 58/145 (40%), Positives = 88/145 (60%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIM 1061
G + ++FS TK+LD+LE L+ + YRR+DGT S+ R+ A+ DFN P+ + ++
Sbjct: 1324 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFND-PDTDCFIFLL 1382
Query: 1062 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1121
S++AA GLN+ A V++ D NP E+QA+ RAHRIGQTR V V+ + VE
Sbjct: 1383 SIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEA--VVEK-- 1438
Query: 1122 LALQQKKREMVA--SAFGEDETGGQ 1144
L+ QK+ E+ + S ED+ G+
Sbjct: 1439 LSSHQKEDELRSGGSVDLEDDMAGK 1463
Score = 134 (52.2 bits), Expect = 3.0e-31, Sum P(6) = 3.0e-31
Identities = 34/102 (33%), Positives = 53/102 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L+KV W +++DEAQ +K+ + +AR R +RR L+GTP+QN + +L+S L
Sbjct: 1098 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1157
Query: 688 DPFAVYKSFCSMIKVPISKN-PVKGYKK--LQAVLKTIMLRR 726
D F K+F P K P + L+ K I++ R
Sbjct: 1158 DVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHR 1199
Score = 89 (36.4 bits), Expect = 3.0e-31, Sum P(6) = 3.0e-31
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
P + A L +Q + L WM+ + L+ GILAD+ GLGKT+ +ALI
Sbjct: 973 PSMLQAGTLRDYQLVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALI 1020
Score = 73 (30.8 bits), Expect = 3.0e-31, Sum P(6) = 3.0e-31
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTK----DPCELAKFDVVITTYS 560
L++ P +VL W EL T S+S + Y G+ R+K + C + KF+V++TTY
Sbjct: 1034 LIIVPNAVLVNWKSELH---TWLPSVSCIYYVGTKDQRSKLFSQEVCAM-KFNVLVTTYE 1089
Query: 561 IVSMEVPK 568
+ + K
Sbjct: 1090 FIMYDRSK 1097
Score = 61 (26.5 bits), Expect = 3.0e-31, Sum P(6) = 3.0e-31
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 242 LNKKELDGVKED---MEAEIKTRSMASHL-LKLSPESIQSNSSDCKSHVDDEPDICILED 297
L+KK D +K+ + ++ + + L L+L E + SD +S V +E D E
Sbjct: 697 LSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEI 756
Query: 298 ISQPARSNQSLVL---GKTLSMNRSACSNHSVALGKPVVT 334
+S P R + V + L MNR +N K + T
Sbjct: 757 MSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKT 796
Score = 55 (24.4 bits), Expect = 3.0e-31, Sum P(6) = 3.0e-31
Identities = 29/113 (25%), Positives = 49/113 (43%)
Query: 714 KLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR----- 768
+L +L+ MLRR + +G +LP KV ++ + + + Y ++
Sbjct: 1199 RLHQILEPFMLRRRVEDV-EG----SLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDP 1253
Query: 769 DQFKEYAAAGTVKQN--YVNILLMLLRLRQACDHPLL----VKGFDSNSLLRS 815
D K A + Q Y + + LR+AC+HPLL F + L+RS
Sbjct: 1254 DDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRS 1306
Score = 41 (19.5 bits), Expect = 3.1e-29, Sum P(6) = 3.1e-29
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 353 GLGGMKSKASDERLIL-QVAMQGI---SQPNAEASAPDG 387
G+ G S D+ + + MQ + SQP A +S P G
Sbjct: 155 GMVGSSSVGKDQDARMGMLNMQDLNPSSQPQASSSKPSG 193
Score = 38 (18.4 bits), Expect = 3.8e-24, Sum P(6) = 3.8e-24
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 403 WMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 462
++ +K T SL G+LA + + + L L+ R D R E ++ +++
Sbjct: 696 FLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQE 755
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 289 (106.8 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 61/160 (38%), Positives = 95/160 (59%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K+ G K ++FSQ T+MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 608 LPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDV 667
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 668 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 727
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
++ +I+ KR++ ++ G Q+ L N+L
Sbjct: 728 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN-QSKNFL 766
Score = 117 (46.2 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 407
Query: 693 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 747
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 408 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 467
Query: 748 KQVDFTDEERDFYSQL 763
+ ++ FY+ +
Sbjct: 468 VYAPLSKKQEVFYTAI 483
Score = 68 (29.0 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 417 GILADDQGLGKT---ISTIALILKERPP 441
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 244 GILADEMGLGKTVQCIATIALMIQRGVP 271
Score = 61 (26.5 bits), Expect = 1.7e-25, Sum P(4) = 1.7e-25
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 700 IKVPISKNPVKGY---KKLQAVLKTIMLRRTKGTLL---DGEPIINLP---PKVIMLKQV 750
++VP K V Y K Q V T ++ RT + + E + P PK K +
Sbjct: 458 LEVP-PKREVVVYAPLSKKQEVFYTAIVNRTITNMFGSSEKETVELSPTGRPKRRTRKSI 516
Query: 751 DFTDEERDFYSQLE-INSRDQ---FKEYAAAGT--VKQNYVNILL--MLLRLRQACDHPL 802
D++ + DF ++LE + S+ Q +E A T ++ VN+ L +++ LR+ C+HP
Sbjct: 517 DYSKID-DFPNELEKLISQIQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKCCNHPY 575
Query: 803 LVK 805
L++
Sbjct: 576 LIE 578
Score = 51 (23.0 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 66
+ S+N ++S EE + K + E E +CS+ V + Q S++K
Sbjct: 133 EDESYNISEVMSKEEILSVAKKNKKETENESSCSNL-CVEDLQKNRDSNSIIK 184
Score = 51 (23.0 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 31/150 (20%), Positives = 62/150 (41%)
Query: 175 LSPSLLSQNQVVHAKE-EHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQY 233
++P++L + + + A E E +LE R + +E D I R L L S Y
Sbjct: 26 ITPAMLEEEEQLEAAGLERERKMLEKARMSWDRESVD-------IRYRRLQHLLEKSNIY 78
Query: 234 FPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC 293
+ + + +++L+ K+ + E K S+ K S ++ + N+ + E +
Sbjct: 79 SKFLL-TKMEQQQLEEQKKKEKLERKKESLKVTKGKNSIDASEENTVVMRKKRGREDESY 137
Query: 294 ILEDISQPARSNQSLVLGKTLSMNRSACSN 323
+ ++ K + N S+CSN
Sbjct: 138 NISEVMSKEEILSVAKKNKKETENESSCSN 167
Score = 48 (22.0 bits), Expect = 6.4e-31, Sum P(4) = 6.4e-31
Identities = 24/113 (21%), Positives = 48/113 (42%)
Query: 176 SPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFP 235
S LL++ + +E+ + LE K+ ++ G +S + + + R+
Sbjct: 79 SKFLLTKMEQQQLEEQKKKEKLERKKESL--KVTKGKNSIDASEENTVVMRKKRGREDES 136
Query: 236 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDD 288
Y ++K+E+ V + + E + S S+L E +Q N D S + D
Sbjct: 137 YNISEVMSKEEILSVAKKNKKETENESSCSNLCV---EDLQKNR-DSNSIIKD 185
Score = 45 (20.9 bits), Expect = 7.3e-24, Sum P(4) = 7.3e-24
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 731 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 787
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 439
Query: 788 LLMLL 792
L +L
Sbjct: 440 LHQIL 444
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 222 (83.2 bits), Expect = 3.8e-31, Sum P(4) = 3.8e-31
Identities = 51/144 (35%), Positives = 81/144 (56%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
GG + ++FSQ T MLD+L+ + Y R+DG++ R A+K+F P + V ++S
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLLS 414
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 415 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 474
Query: 1123 ALQQKKREMVASAF-GEDETGGQQ 1145
K ++ G T G Q
Sbjct: 475 RKAASKLQLTNMVIEGGHFTPGAQ 498
Score = 140 (54.3 bits), Expect = 3.8e-31, Sum P(4) = 3.8e-31
Identities = 49/183 (26%), Positives = 79/183 (43%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L W + +DEA +KN + + R A R L+GTPIQN++ +LYS +
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEP 216
Query: 688 DPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745
D F + F + I K K +L +L+ +LRR K + LP K
Sbjct: 217 DLFCREQVEDFVQRYQ-DIEKES-KSASELHRLLQPFLLRRVKAQVAT-----ELPKKTE 269
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
++ + ++ +Y + + D F+ A QN +L +LR+ DHP L
Sbjct: 270 VVVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQN------ILTQLRKCVDHPYLFD 323
Query: 806 GFD 808
G +
Sbjct: 324 GVE 326
Score = 94 (38.1 bits), Expect = 3.8e-31, Sum P(4) = 3.8e-31
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 436
G+ + L +Q ++W+VQ HC G IL D+ GLGKT TIAL++
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHCQNGCILGDEMGLGKTCQTIALLI 80
Score = 75 (31.5 bits), Expect = 3.8e-31, Sum P(4) = 3.8e-31
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 561
LV+CP SVL W EE+ + G LS + Y G + D + + F V++TTY I
Sbjct: 93 LVLCPLSVLSNWKEEMER--FAPG-LSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEI 149
Score = 40 (19.1 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 175 LSPSLLSQNQVVHAKEEHEDLILESKRA 202
+ P L + QV + ++D+ ESK A
Sbjct: 214 VEPDLFCREQVEDFVQRYQDIEKESKSA 241
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 222 (83.2 bits), Expect = 5.9e-31, Sum P(4) = 5.9e-31
Identities = 47/129 (36%), Positives = 78/129 (60%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
GG + ++FSQ T+MLD+L+ + Y R+DG++ R A+K+F P + V ++S
Sbjct: 362 GGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLS 420
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 421 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 480
Query: 1123 ALQQKKREM 1131
K ++
Sbjct: 481 RKAASKLQL 489
Score = 137 (53.3 bits), Expect = 5.9e-31, Sum P(4) = 5.9e-31
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 168 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 227
Query: 693 YK--SFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
+ F + I K + +L +L+ +LRR K E LP K ++
Sbjct: 228 EEVGDFIQRYQ-DIEKES-ESASELHKLLQPFLLRRVKA-----EVATELPKKTEVVIYH 280
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
+ ++ +Y + + D F+ A QN +L +LR+ DHP L G +
Sbjct: 281 GMSALQKKYYKAILMKDLDAFENETAKKVKLQN------ILSQLRKCVDHPYLFDGVE 332
Score = 91 (37.1 bits), Expect = 5.9e-31, Sum P(4) = 5.9e-31
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 436
G+ + L +Q ++W+ Q+ HC G IL D+ GLGKT TIAL +
Sbjct: 40 GLTGIHLRSYQLEGVNWLAQR----FHCQNGCILGDEMGLGKTCQTIALFI 86
Score = 79 (32.9 bits), Expect = 5.9e-31, Sum P(4) = 5.9e-31
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 561
L++CP SVL W EE++ + G LS + Y G + D + ++F V++TTY I
Sbjct: 99 LILCPLSVLSNWKEEMQR--FAPG-LSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEI 155
Score = 41 (19.5 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 249 GVKED---MEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSN 305
G KE+ ++ ++K S H+L + E ++S KS P ++ D + + N
Sbjct: 128 GDKEERACLQQDLKQESRF-HVLLTTYEICLKDASFLKSF----PWSVLVVDEAHRLK-N 181
Query: 306 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYS 341
QS +L KTLS S + G P+ S YS
Sbjct: 182 QSSLLHKTLSEFSVVFS--LLLTGTPIQNSLQELYS 215
Score = 39 (18.8 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 23/107 (21%), Positives = 44/107 (41%)
Query: 171 SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGS 230
SF+ P L S+ +V + ++D+ ES+ A ++ R ++ L
Sbjct: 218 SFV--EPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRV--KAEVATELPKK 273
Query: 231 RQYFPYAQPSTLNKK--------ELDGVKEDMEAEIKTRSMASHLLK 269
+ Y S L KK +LD + + ++K +++ S L K
Sbjct: 274 TEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILSQLRK 320
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 239 (89.2 bits), Expect = 6.0e-31, Sum P(2) = 6.0e-31
Identities = 65/201 (32%), Positives = 102/201 (50%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWT 1014
NH + F+G+ P + D+H +++ + + + +K G + ++FSQ T
Sbjct: 179 NHP--YLFDGAEPGPPYTTDMH------LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMT 230
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-VMIMSLKAASLGLNMV 1073
++LD+LE + +Y RLDG R ++ +N V ++S +A LG+N+
Sbjct: 231 RVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLA 290
Query: 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133
A V+L D WNP + QA+DRAHRIGQT+ V V R NTVE+RI+ + K +
Sbjct: 291 TADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL-- 348
Query: 1134 SAFGEDETGGQQTRLTVDDLN 1154
D QQ RL +LN
Sbjct: 349 -----DSIVIQQGRLVDQNLN 364
Score = 193 (73.0 bits), Expect = 6.0e-31, Sum P(2) = 6.0e-31
Identities = 54/177 (30%), Positives = 90/177 (50%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R L+GTP+QN + +L+S FL D
Sbjct: 20 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 79
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F F S K ++L VL+ +LRR K D E +LPPK +
Sbjct: 80 FNSADDFDSWFDTNNCLGDKKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEVKIY 134
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 135 VGLSKMQREWYTRILMKDIDILN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 186
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 223 (83.6 bits), Expect = 6.1e-31, Sum P(5) = 6.1e-31
Identities = 41/118 (34%), Positives = 73/118 (61%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G++ ++FSQ +MLD+LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 850 GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSIFVFLLTT 909
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1121
+ +G+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 910 RVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 967
Score = 159 (61.0 bits), Expect = 6.1e-31, Sum P(5) = 6.1e-31
Identities = 54/195 (27%), Positives = 87/195 (44%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F+
Sbjct: 631 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 690
Query: 688 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 735
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 691 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 747
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
++LP K + T+E+ Y I+S++ ++ + + I L+ LR
Sbjct: 748 MSLSLPDKNEQVLFCRLTEEQHKVYQNF-IDSKEVYR-------ILNGDMQIFSGLVALR 799
Query: 796 QACDHPLLVKGFDSN 810
+ C+HP L G N
Sbjct: 800 KICNHPDLFSGGPKN 814
Score = 96 (38.9 bits), Expect = 6.1e-31, Sum P(5) = 6.1e-31
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 444
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 497 GFLFRKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 551
Query: 445 TEDDNKR 451
T N R
Sbjct: 552 TRGSNYR 558
Score = 68 (29.0 bits), Expect = 6.1e-31, Sum P(5) = 6.1e-31
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYH--GS-SRTKDPC--ELAK-FDVVITTY 559
T++VCPT+V+ QW +E T V + H GS ++ K+ ++A ++IT+Y
Sbjct: 565 TIIVCPTTVMHQWVKEFH---TWWPPFRVAILHETGSYTQKKEKLIRDIAHCHGILITSY 621
Query: 560 SIVSM 564
S + +
Sbjct: 622 SYIRL 626
Score = 39 (18.8 bits), Expect = 6.1e-31, Sum P(5) = 6.1e-31
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 106 QPCTYSHSHSSRT---KQMVFAK--DEGNDDLFPCWSTVSDSVEPIDEAVGRNS 154
Q C S + S+ KQ + K D+GN ++ + S + P A GR+S
Sbjct: 15 QDCLLSKTEQSQCVSDKQEMTIKQEDDGNMEVEESLPSCSSANGPSASAEGRSS 68
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 251 (93.4 bits), Expect = 6.1e-31, Sum P(4) = 6.1e-31
Identities = 63/165 (38%), Positives = 96/165 (58%)
Query: 971 DSNDLHGGDTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
D +L D LD++ + K+ K I +K G + ++FSQ +MLD+L LK S
Sbjct: 1047 DECELGAKDLLDSMIRASGKLVLLDKLLI-RLKETGHRVLIFSQMVRMLDILADYLKGRS 1105
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTLPEVSV-MIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
Q++RLDG+MS R +A+ FN + ++S KA LG+N+ A V++ D WNP
Sbjct: 1106 FQFQRLDGSMSREKRSQAMDRFNAVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNP 1165
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132
+ QA RAHRIGQ V++ RL K++VE+ IL ++ K++MV
Sbjct: 1166 QNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDIL--ERAKQKMV 1208
Score = 152 (58.6 bits), Expect = 6.1e-31, Sum P(4) = 6.1e-31
Identities = 47/176 (26%), Positives = 83/176 (47%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W + +DEA +KN + + R ++GTP+QN++ +L++ FL
Sbjct: 880 LGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQNSLKELWNLLNFLMP 939
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+ F K F + +N +L +VLK +LRR K D E +LPPK +
Sbjct: 940 NKFTSLKDFQDQYS-DLKENDQ--IAQLHSVLKPHLLRRIKK---DVEK--SLPPKTERI 991
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+VD ++ ++ +Y + + F+E K +NI+ L++ C+HP L
Sbjct: 992 LRVDLSNVQKKYYKWILTKN---FQELNKGKGEKTTLLNIMT---ELKKTCNHPYL 1041
Score = 79 (32.9 bits), Expect = 6.1e-31, Sum P(4) = 6.1e-31
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
P + A L +Q L+W+V S ++ + ILAD+ GLGKTI TI+ +
Sbjct: 747 PSWISAGTLRDYQMEGLNWLVH---SWMNNTNVILADEMGLGKTIQTISFL 794
Score = 62 (26.9 bits), Expect = 6.1e-31, Sum P(4) = 6.1e-31
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 491 SFNFVEQ-AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 549
S+ F EQ KG P LVV P S + W E + ++V+VY G+ +++D L
Sbjct: 795 SYLFNEQDIKG-PF---LVVVPLSTIENWQREFAKWAPA---MNVIVYTGTGQSRDIIRL 847
Query: 550 AKF 552
+F
Sbjct: 848 YEF 850
Score = 49 (22.3 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 705 SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP-PKVIMLKQV-DFTDEERDFYSQ 762
S N KG KKLQ +K I+ E I K +M +++ D+T ER +Q
Sbjct: 581 SLNNFKGNKKLQNYVKGILDNIQWRQEASKEDIEQADITKELMKQEIQDYTIVER-VIAQ 639
Query: 763 LEI-NSRDQ 770
E+ SRDQ
Sbjct: 640 REVAQSRDQ 648
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 257 (95.5 bits), Expect = 8.4e-31, Sum P(4) = 8.4e-31
Identities = 56/158 (35%), Positives = 88/158 (55%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT-LPE 1055
+ +K + ++FSQ TKML++LE L+ QY R+DG++ R KA+ FN + E
Sbjct: 595 LKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSE 654
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
V ++S +A LG+N+ A V++ D WNP + QA RAHR+GQ + V + R N
Sbjct: 655 HFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHN 714
Query: 1116 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDL 1153
+VE+RI+ + + K M+ GG T + D+L
Sbjct: 715 SVEERIMQVAKHKM-MLTHLVVRPGMGGMTTNFSKDEL 751
Score = 166 (63.5 bits), Expect = 8.4e-31, Sum P(4) = 8.4e-31
Identities = 47/183 (25%), Positives = 93/183 (50%)
Query: 621 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 680
+ + A L + W +V+DEA +++++++ R R + L+GTP+QN +++L+
Sbjct: 391 ISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFH 450
Query: 681 YFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINL 740
FL F ++F + +SK + K+L +L+ MLRR K +L ++
Sbjct: 451 LLNFLSSGKFNDLQTFQAEF-TDVSKE--EQVKRLHEILEPHMLRRLKADVLK-----SM 502
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 800
PPK + +V+ + ++ FY + + FK G + ++L +++ LR+ C+H
Sbjct: 503 PPKSEFIVRVELSSMQKKFYKHILTKN---FKALNQKGGGR--VCSLLNIMMDLRKCCNH 557
Query: 801 PLL 803
P L
Sbjct: 558 PYL 560
Score = 60 (26.2 bits), Expect = 8.4e-31, Sum P(4) = 8.4e-31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI T+ +
Sbjct: 289 ILADEMGLGKTIQTVVFL 306
Score = 42 (19.8 bits), Expect = 8.4e-31, Sum P(4) = 8.4e-31
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF+V++T+Y +S++
Sbjct: 380 KFNVMLTSYEFISVD 394
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 228 (85.3 bits), Expect = 8.9e-31, Sum P(3) = 8.9e-31
Identities = 55/143 (38%), Positives = 78/143 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPE 1055
+ L +K I+FS + + LDL E L+ S +Y RLDG+ S R+ +V F P
Sbjct: 344 VGLENKKVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPR 403
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
V ++S +A GLN+V++ V+ LD WNP QA R HRIGQT+PV + R+ K
Sbjct: 404 YMVFLLSTRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIFRIHAKG 463
Query: 1116 TVEDRILALQQKKREMVASAFGE 1138
TVED++ KK + GE
Sbjct: 464 TVEDQMRRRMDKKAYLADKVMGE 486
Score = 163 (62.4 bits), Expect = 8.9e-31, Sum P(3) = 8.9e-31
Identities = 46/133 (34%), Positives = 68/133 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W VVLDE IKN R++ + + LR++ R L+GTPIQN + +L+S +L D
Sbjct: 111 KTLWAHVVLDEGHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQNDLTELWSILHWLYPDV 170
Query: 690 F--AVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F A K F + + K + LK +MLRRTK D + ++LPPK +
Sbjct: 171 FVPATAKLFENAFSLTDGKFDSIFLSHITRFLKVVMLRRTK---CDSQIGLDLPPKKETV 227
Query: 748 KQVDFTDEERDFY 760
V T+ + +Y
Sbjct: 228 FSVPLTELQLGWY 240
Score = 84 (34.6 bits), Expect = 8.9e-31, Sum P(3) = 8.9e-31
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT--LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 543
G + ++ + + K A + LVVCP SVL W E+ T L + YHG S
Sbjct: 20 GKTLQALSLFQYVKDNERADSKFLVVCPLSVLNTWMSEISRWTTG---LRPMAYHGGSEE 76
Query: 544 KD---PC---ELAK-FDVVITTYSIVSMEV 566
++ C + A+ +++V+TTY + ++
Sbjct: 77 RENLRTCFRQQGAEPWNIVVTTYETLCSDL 106
Score = 71 (30.1 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 416 GGILADDQGLGKTISTIAL 434
GGILADD GLGKT+ ++L
Sbjct: 10 GGILADDMGLGKTLQALSL 28
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 291 (107.5 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 62/160 (38%), Positives = 94/160 (58%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G K ++FSQ T+MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 586 LPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDV 645
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQTRPV V RL NT
Sbjct: 646 FIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANT 705
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
++ +I+ KR++ ++ G Q+ L N+L
Sbjct: 706 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN-QSKNFL 744
Score = 117 (46.2 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 326 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 385
Query: 693 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 747
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 386 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 445
Query: 748 KQVDFTDEERDFYSQL 763
+ ++ FY+ +
Sbjct: 446 VYAPLSKKQEIFYTAI 461
Score = 68 (29.0 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 417 GILADDQGLGKT---ISTIALILKERPP 441
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 222 GILADEMGLGKTVQCIATIALMIQRGVP 249
Score = 61 (26.5 bits), Expect = 5.5e-25, Sum P(4) = 5.5e-25
Identities = 32/123 (26%), Positives = 59/123 (47%)
Query: 700 IKVPISKNPVKGY---KKLQAVLKTIMLRRTKGTLL---DGEPIINLP---PKVIMLKQV 750
++VP K V Y K Q + T ++ RT + + E + P PK K V
Sbjct: 436 LEVP-PKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETVELSPTGRPKRRTRKSV 494
Query: 751 DFTDEERDFYSQLE-INSR-----DQFKEYAAAGTVKQNYVNILL--MLLRLRQACDHPL 802
D++ + DF ++LE + S+ D+ + ++ VN+ L +++ LR+ C+HP
Sbjct: 495 DYSKID-DFPNELEKLISQIQPEVDRERTIVETSVPIESEVNLKLQNIMMLLRKCCNHPY 553
Query: 803 LVK 805
L++
Sbjct: 554 LIE 556
Score = 45 (20.9 bits), Expect = 2.3e-23, Sum P(4) = 2.3e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 731 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 787
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 358 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 417
Query: 788 LLMLL 792
L +L
Sbjct: 418 LHQIL 422
Score = 43 (20.2 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLK 66
+ S+N ++S EE + K + E E + SS+ V + Q S +K
Sbjct: 111 EDESYNISEVMSKEEILSVAKKNKKENEDE-SSSSNMCVEDLQKNKDSNSKIK 162
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 277 (102.6 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 60/171 (35%), Positives = 98/171 (57%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 850 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 909
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 910 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 969
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVD 1151
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + + D
Sbjct: 970 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTIDE--GDEGSMPAD 1018
Score = 108 (43.1 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 44/195 (22%), Positives = 90/195 (46%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 629 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 688
Query: 692 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 689 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 743
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 809
++++ Y L N + K+ + +++N + ++++LR+ +HPLL + + +
Sbjct: 744 CAMSEKQEQLYLGL-FN---RLKK--SINNMEKN-TEMCNVMMQLRKMANHPLLHRQYYT 796
Query: 810 NSLLRSSVEMAKKLP 824
L+ ++ K P
Sbjct: 797 AEKLKEMSQLMLKEP 811
Score = 83 (34.3 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 497 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 539
Score = 58 (25.5 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 560
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 552 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 608
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 271 (100.5 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 61/166 (36%), Positives = 92/166 (55%)
Query: 989 EKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVK 1048
EK+ +KC K G K ++F+Q+ KMLD+LE L + + RLDG+ V R K V
Sbjct: 1774 EKLLSKC-----KREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVT 1828
Query: 1049 DFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1108
FN + + I S ++ S+G+N+ AA V+ D WNP+ + QA+DR HRIGQT+ V V
Sbjct: 1829 KFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHV 1888
Query: 1109 LRLTVKNTVEDRILALQQKKREM--VASAFGEDETGGQQTRLTVDD 1152
R + TVE+ I Q +KR++ + G +++T D
Sbjct: 1889 FRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTD 1934
Score = 149 (57.5 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 52/180 (28%), Positives = 91/180 (50%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWG--LRAKRRWCL--SGTPIQNAIDDLYSYFRFLRYD 688
W ++LDEA +IKN T+ R W L KR CL +GTP+QN++++L+S FL +
Sbjct: 784 WKYIILDEAHNIKNFNTK--R--WNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPN 839
Query: 689 PFAVYKSFCSMIKVP----ISKNPVKGYK----KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F P I K+ + K +L V++ +LRR K + + E +
Sbjct: 840 IFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNV-EKE----M 894
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 800
P K + + T ++ Y + IN+++ + G NY+ ++ +L++LR+ C+H
Sbjct: 895 PNKYEHIIKCKLTRRQQILYDEF-INNKN-VQNTLNTG----NYIGLMNILIQLRKVCNH 948
Score = 76 (31.8 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q L W++ ++++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 55 (24.4 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
LV+ PTS+L W EL+ +L Y+G+ + + F + I++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCPC---FKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 562 V 562
V
Sbjct: 772 V 772
Score = 48 (22.0 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 954 TNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSI 1000
T+H+ S + SI ++ND GGD +NI +++ K +SI
Sbjct: 305 TSHNDEKSGDNSIGEDDNNNDEKGGD--NNIDEDDNNNDEKSGDNSI 349
Score = 44 (20.5 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 747 LKQVDFTD-EERDFYSQLEINSRDQ 770
LK+ D TD EE D+ +++S D+
Sbjct: 228 LKEDDLTDQEEEDYLLDEQMSSTDE 252
Score = 43 (20.2 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 447 DDNKRQLETLN-LDEEDN-GIQ--VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRP 502
D+++ + E +N LD+E N I+ + + K DY + N A N +E +
Sbjct: 251 DESENKEEEINMLDDEANLPIEELLKRMYGFKSGEDYINFMENEDDANEENVIETSHNDE 310
Query: 503 AAG 505
+G
Sbjct: 311 KSG 313
Score = 42 (19.8 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENE 989
N++ S + SI ++ND GGD +NI DEN+
Sbjct: 370 NNNDHKSEDNSIGEDDNNNDEKGGD--NNI-DEND 401
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 82 SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSD 141
S N I N+ S++ GD + T + + + DE + + + D
Sbjct: 207 SNNNSEIVNNNASSVDNGDKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEI-NMLDD 265
Query: 142 SVE-PIDEAVGRNSSYHDGCNSFPFKDS 168
PI+E + R + G + F ++
Sbjct: 266 EANLPIEELLKRMYGFKSGEDYINFMEN 293
Score = 41 (19.5 bits), Expect = 3.8e-27, Sum P(6) = 3.8e-27
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 446 EDDNKRQLET--LNLDEEDN 463
EDDN ++ N+DE+DN
Sbjct: 351 EDDNNNDHKSGDNNIDEDDN 370
Score = 41 (19.5 bits), Expect = 3.7e-20, Sum P(5) = 3.7e-20
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 754 DEERDFYSQLEINSRDQFKEYAAAGTVKQNYVN 786
DEE+D ++NS Y QN+++
Sbjct: 1636 DEEKDNCDDEDMNSNLSSNVYGCIDISSQNFIH 1668
Score = 40 (19.1 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 846 NDPPEDAVV--SICGHVFCNQCICERLTADDNQ---CPTRNCKIRLSLSSVF 892
N+PPED+ V V C E+ DD + C + LS S+V+
Sbjct: 1606 NNPPEDSEVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLS-SNVY 1656
Score = 39 (18.8 bits), Expect = 6.1e-27, Sum P(6) = 6.1e-27
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 446 EDDNKR--QLETLNLDEEDNGIQVNGLDLVKQESD 478
EDDN + E ++ E+DN G D E+D
Sbjct: 367 EDDNNNDHKSEDNSIGEDDNNNDEKGGDNNIDEND 401
Score = 38 (18.4 bits), Expect = 7.7e-27, Sum P(6) = 7.7e-27
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 446 EDDNK--RQLETLNLDEEDN 463
E+DN + E N+DE DN
Sbjct: 399 ENDNNSDHKSEDNNIDENDN 418
Score = 38 (18.4 bits), Expect = 6.1e-16, Sum P(3) = 6.1e-16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 273 ESIQSNSSD-----C---KSHVDDEP-DICILEDISQPARSN 305
E + NSSD C K + DDE D C ED++ SN
Sbjct: 1613 EVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLSSN 1654
Score = 38 (18.4 bits), Expect = 2.6e-15, Sum P(4) = 2.6e-15
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 945 LAKPRGNTVTNHSLRHSFN-GSICCPGDSNDLHGGDTLDNISDEN 988
+AK + ++ N+S + N + D+ND + D D+ +D+N
Sbjct: 571 IAKSKPSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNNDDNNDDN 615
Score = 37 (18.1 bits), Expect = 9.7e-27, Sum P(6) = 9.7e-27
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 418 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 463
I+ D+ L +T I K +P S +N + N + DN
Sbjct: 559 IIKDEYNLRRT-----KIAKSKPSSDNNNSENDNNNDNNNDNNNDN 599
Score = 37 (18.1 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 971 DSNDLHGGDTLDNISDEN 988
D+ND + D D+ +D+N
Sbjct: 610 DNNDDNNDDNNDDNNDDN 627
Score = 37 (18.1 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 971 DSNDLHGGDTLDNISDEN 988
D+ND + D D+ +D+N
Sbjct: 606 DNNDDNNDDNNDDNNDDN 623
Score = 37 (18.1 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 971 DSNDLHGGDTLDNISDEN 988
D+ND + D D+ +D+N
Sbjct: 602 DNNDDNNDDNNDDNNDDN 619
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 271 (100.5 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 61/166 (36%), Positives = 92/166 (55%)
Query: 989 EKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVK 1048
EK+ +KC K G K ++F+Q+ KMLD+LE L + + RLDG+ V R K V
Sbjct: 1774 EKLLSKC-----KREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVT 1828
Query: 1049 DFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1108
FN + + I S ++ S+G+N+ AA V+ D WNP+ + QA+DR HRIGQT+ V V
Sbjct: 1829 KFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHV 1888
Query: 1109 LRLTVKNTVEDRILALQQKKREM--VASAFGEDETGGQQTRLTVDD 1152
R + TVE+ I Q +KR++ + G +++T D
Sbjct: 1889 FRFVCEYTVEENIWKKQLQKRKLDNICINMGNFNNSNTHSKITDTD 1934
Score = 149 (57.5 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 52/180 (28%), Positives = 91/180 (50%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWG--LRAKRRWCL--SGTPIQNAIDDLYSYFRFLRYD 688
W ++LDEA +IKN T+ R W L KR CL +GTP+QN++++L+S FL +
Sbjct: 784 WKYIILDEAHNIKNFNTK--R--WNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPN 839
Query: 689 PFAVYKSFCSMIKVP----ISKNPVKGYK----KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F P I K+ + K +L V++ +LRR K + + E +
Sbjct: 840 IFTSHLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKNV-EKE----M 894
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 800
P K + + T ++ Y + IN+++ + G NY+ ++ +L++LR+ C+H
Sbjct: 895 PNKYEHIIKCKLTRRQQILYDEF-INNKN-VQNTLNTG----NYIGLMNILIQLRKVCNH 948
Score = 76 (31.8 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q L W++ ++++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 55 (24.4 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSI 561
LV+ PTS+L W EL+ +L Y+G+ + + F + I++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCPC---FKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 562 V 562
V
Sbjct: 772 V 772
Score = 48 (22.0 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 954 TNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSI 1000
T+H+ S + SI ++ND GGD +NI +++ K +SI
Sbjct: 305 TSHNDEKSGDNSIGEDDNNNDEKGGD--NNIDEDDNNNDEKSGDNSI 349
Score = 44 (20.5 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 747 LKQVDFTD-EERDFYSQLEINSRDQ 770
LK+ D TD EE D+ +++S D+
Sbjct: 228 LKEDDLTDQEEEDYLLDEQMSSTDE 252
Score = 43 (20.2 bits), Expect = 1.3e-27, Sum P(5) = 1.3e-27
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 447 DDNKRQLETLN-LDEEDN-GIQ--VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRP 502
D+++ + E +N LD+E N I+ + + K DY + N A N +E +
Sbjct: 251 DESENKEEEINMLDDEANLPIEELLKRMYGFKSGEDYINFMENEDDANEENVIETSHNDE 310
Query: 503 AAG 505
+G
Sbjct: 311 KSG 313
Score = 42 (19.8 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENE 989
N++ S + SI ++ND GGD +NI DEN+
Sbjct: 370 NNNDHKSEDNSIGEDDNNNDEKGGD--NNI-DEND 401
Score = 41 (19.5 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 82 SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSD 141
S N I N+ S++ GD + T + + + DE + + + D
Sbjct: 207 SNNNSEIVNNNASSVDNGDKELKEDDLTDQEEEDYLLDEQMSSTDESENKEEEI-NMLDD 265
Query: 142 SVE-PIDEAVGRNSSYHDGCNSFPFKDS 168
PI+E + R + G + F ++
Sbjct: 266 EANLPIEELLKRMYGFKSGEDYINFMEN 293
Score = 41 (19.5 bits), Expect = 3.8e-27, Sum P(6) = 3.8e-27
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 446 EDDNKRQLET--LNLDEEDN 463
EDDN ++ N+DE+DN
Sbjct: 351 EDDNNNDHKSGDNNIDEDDN 370
Score = 41 (19.5 bits), Expect = 3.7e-20, Sum P(5) = 3.7e-20
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 754 DEERDFYSQLEINSRDQFKEYAAAGTVKQNYVN 786
DEE+D ++NS Y QN+++
Sbjct: 1636 DEEKDNCDDEDMNSNLSSNVYGCIDISSQNFIH 1668
Score = 40 (19.1 bits), Expect = 1.2e-30, Sum P(6) = 1.2e-30
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 846 NDPPEDAVV--SICGHVFCNQCICERLTADDNQ---CPTRNCKIRLSLSSVF 892
N+PPED+ V V C E+ DD + C + LS S+V+
Sbjct: 1606 NNPPEDSEVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLS-SNVY 1656
Score = 39 (18.8 bits), Expect = 6.1e-27, Sum P(6) = 6.1e-27
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 446 EDDNKR--QLETLNLDEEDNGIQVNGLDLVKQESD 478
EDDN + E ++ E+DN G D E+D
Sbjct: 367 EDDNNNDHKSEDNSIGEDDNNNDEKGGDNNIDEND 401
Score = 38 (18.4 bits), Expect = 7.7e-27, Sum P(6) = 7.7e-27
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 446 EDDNK--RQLETLNLDEEDN 463
E+DN + E N+DE DN
Sbjct: 399 ENDNNSDHKSEDNNIDENDN 418
Score = 38 (18.4 bits), Expect = 6.1e-16, Sum P(3) = 6.1e-16
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 273 ESIQSNSSD-----C---KSHVDDEP-DICILEDISQPARSN 305
E + NSSD C K + DDE D C ED++ SN
Sbjct: 1613 EVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMNSNLSSN 1654
Score = 38 (18.4 bits), Expect = 2.6e-15, Sum P(4) = 2.6e-15
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 945 LAKPRGNTVTNHSLRHSFN-GSICCPGDSNDLHGGDTLDNISDEN 988
+AK + ++ N+S + N + D+ND + D D+ +D+N
Sbjct: 571 IAKSKPSSDNNNSENDNNNDNNNDNNNDNNDDNNDDNNDDNNDDN 615
Score = 37 (18.1 bits), Expect = 9.7e-27, Sum P(6) = 9.7e-27
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 418 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 463
I+ D+ L +T I K +P S +N + N + DN
Sbjct: 559 IIKDEYNLRRT-----KIAKSKPSSDNNNSENDNNNDNNNDNNNDN 599
Score = 37 (18.1 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 971 DSNDLHGGDTLDNISDEN 988
D+ND + D D+ +D+N
Sbjct: 610 DNNDDNNDDNNDDNNDDN 627
Score = 37 (18.1 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 971 DSNDLHGGDTLDNISDEN 988
D+ND + D D+ +D+N
Sbjct: 606 DNNDDNNDDNNDDNNDDN 623
Score = 37 (18.1 bits), Expect = 3.3e-15, Sum P(4) = 3.3e-15
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 971 DSNDLHGGDTLDNISDEN 988
D+ND + D D+ +D+N
Sbjct: 602 DNNDDNNDDNNDDNNDDN 619
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 209 (78.6 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 368 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 426
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 427 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 486
Query: 1115 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1153
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 487 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 532
Score = 203 (76.5 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 55/185 (29%), Positives = 93/185 (50%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 163 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 222
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 223 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 274
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 275 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 330
Query: 808 DSNSL 812
+ L
Sbjct: 331 EEKIL 335
Score = 68 (29.0 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 37 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 76
Score = 67 (28.6 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 446 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 505
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 30 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 86
Query: 506 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 550
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 87 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 142
Query: 551 --KFDVVITTYSIVSMEVPK 568
KFD +ITT+ ++ + P+
Sbjct: 143 AYKFDALITTFEMILSDCPE 162
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 213 (80.0 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 509 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 568
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 569 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 620
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 621 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLING 675
Query: 807 FDSNSL 812
+ L
Sbjct: 676 AEEKIL 681
Score = 194 (73.4 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1060
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 720 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 778
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 779 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 838
Query: 1121 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1153
+ K + + + + GG QQ +++ V+DL
Sbjct: 839 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 877
Score = 66 (28.3 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 542
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 413 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 468
Query: 543 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 568
+D P + KF VVITT+ ++ + P+
Sbjct: 469 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 508
Score = 65 (27.9 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 383 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 422
Score = 39 (18.8 bits), Expect = 1.6e-30, Sum P(5) = 1.6e-30
Identities = 19/81 (23%), Positives = 30/81 (37%)
Query: 76 KRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPC 135
K++ KN +P+ L L +S + S R + + N+DL
Sbjct: 117 KKKKGKRKNEIPVDSLDLDQDLLSPSAQSPEESAESADSQKRRSGRQVKRRKYNEDLD-- 174
Query: 136 WSTVSDSVEPIDE-AVGRNSS 155
+ V D E I GR S+
Sbjct: 175 FKVVDDDGETIAVLGAGRTSA 195
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 278 (102.9 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 60/171 (35%), Positives = 98/171 (57%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVD 1151
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + + D
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE--GDEGSMPAD 1015
Score = 107 (42.7 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 44/195 (22%), Positives = 90/195 (46%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 692 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDRIEL 740
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 809
++++ Y L N + K+ + +++N + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNLEKN-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 810 NSLLRSSVEMAKKLP 824
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 56 (24.8 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL------AKFDVVITTYS 560
L+V P S + W E+ + L VL Y+GS + ++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 278 (102.9 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 60/166 (36%), Positives = 97/166 (58%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1146
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + T
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE-GDEGT 1011
Score = 105 (42.0 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 43/195 (22%), Positives = 90/195 (46%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 692 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 740
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 809
++++ Y L N + K+ + ++++ + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNIEKS-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 810 NSLLRSSVEMAKKLP 824
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 58 (25.5 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 560
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 278 (102.9 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 60/166 (36%), Positives = 97/166 (58%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1146
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + T
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE-GDEGT 1011
Score = 105 (42.0 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 43/195 (22%), Positives = 90/195 (46%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 692 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 740
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 809
++++ Y L N + K+ + ++++ + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNIEKS-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 810 NSLLRSSVEMAKKLP 824
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 58 (25.5 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 560
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 278 (102.9 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 60/166 (36%), Positives = 97/166 (58%)
Query: 981 LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
+D I D + C + +K G++ ++FSQ+T MLD+LE LK +Y RLDG +
Sbjct: 847 MDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQI 906
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + +FNT ++ V ++S KA LG+N+ +A V+L D+ NP + QA DR HR+
Sbjct: 907 SERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRV 966
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1146
GQT+ V V++L + T+E+ +L + Q+K ++ DE G + T
Sbjct: 967 GQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDE-GDEGT 1011
Score = 105 (42.0 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 43/195 (22%), Positives = 90/195 (46%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA----- 691
+ DE +KN + + + A R L+GTP+QN + +L S F+ F+
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 692 VYKSFCSMIKVPISKNPVKGYKKLQA--VLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
+ + F S K ++ + + A ++K +LRR K +L LPPK ++
Sbjct: 686 IRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIEL 740
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS 809
++++ Y L N + K+ + ++++ + ++++LR+ +HPLL + + +
Sbjct: 741 CAMSEKQEQLYLGL-FN---RLKK--SINNIEKS-TEMCNVMMQLRKMANHPLLHRQYYT 793
Query: 810 NSLLRSSVEMAKKLP 824
L+ ++ K P
Sbjct: 794 AEKLKEMSQLMLKEP 808
Score = 83 (34.3 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
++ L +Q++ L+W+ L+ GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLN---GILADEMGLGKTIQAIAFL 536
Score = 58 (25.5 bits), Expect = 1.8e-30, Sum P(4) = 1.8e-30
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC------ELAKFDVVITTYS 560
L+V P S + W E+ + L VL Y+GS + + +++V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 218 (81.8 bits), Expect = 2.1e-30, Sum P(4) = 2.1e-30
Identities = 41/118 (34%), Positives = 72/118 (61%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G++ ++FSQ +ML +LE L+ Y ++DGT ++ +R + +N + V +++
Sbjct: 849 GQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLTT 908
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1121
+ LG+N+ A V++ D WNP+T+ QA +RA RIGQ + V+V RL T+E++I
Sbjct: 909 RVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 966
Score = 154 (59.3 bits), Expect = 2.1e-30, Sum P(4) = 2.1e-30
Identities = 57/196 (29%), Positives = 87/196 (44%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
+++ W V+LDE I+N V AC R R LSG+P+QN + +L+S F F
Sbjct: 629 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFP 688
Query: 688 DPFAVYKSFCSMIKVPISK------NPVK---GYK---KLQAVLKTIMLRRTKGTLLDGE 735
F VPI+ +PV+ YK L+ + +LRR K D +
Sbjct: 689 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS---DVK 745
Query: 736 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
++LP K + TDE+ Y I+S+ ++ G +N I L+ LR
Sbjct: 746 MSLSLPDKNEQVLFCRLTDEQHKVYQNF-IDSKAVYR--ILNG---EN--QIFSGLVALR 797
Query: 796 QACDHPLLVKGFDSNS 811
+ C+HP L G N+
Sbjct: 798 KICNHPDLFSGGPKNT 813
Score = 97 (39.2 bits), Expect = 2.1e-30, Sum P(4) = 2.1e-30
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHC--SGGILADDQGLGKTISTIALILKERPPSFR 444
G L L ++Q+ + W+ + LHC +GGIL D+ GLGKTI IA + R
Sbjct: 495 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 549
Query: 445 TEDDNKR 451
T N R
Sbjct: 550 TRGSNYR 556
Score = 66 (28.3 bits), Expect = 2.1e-30, Sum P(4) = 2.1e-30
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 506 TLVVCPTSVLRQWAEE 521
TL+VCPT+V+ QW +E
Sbjct: 563 TLIVCPTTVMHQWVKE 578
Score = 42 (19.8 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 907 GQEIPTDYSDSKLVEAPSCE 926
GQE D K + +PSC+
Sbjct: 32 GQETAGDSEAGKCLSSPSCD 51
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 236 (88.1 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 57/155 (36%), Positives = 86/155 (55%)
Query: 1006 KAIVFSQWTKMLDLLEASL-KDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L K + Y RLDG++ R V FN P + V++++
Sbjct: 1656 RVLIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLT 1715
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1716 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1775
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+ K +A+ E Q+ T LN LF
Sbjct: 1776 GLQKFKMT-IANTVISQENASLQSMGTEQLLN-LF 1808
Score = 136 (52.9 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 52/189 (27%), Positives = 87/189 (46%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1412 ILDEGHVIKNGKTKLSKAIKQLTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1471
Query: 697 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 744
+ PI S+ G ++A+ + ++ LRR K +L +LPPK+
Sbjct: 1472 AARYGKPILASRDAKSSSREQEAGVLAMEALHRQVLPFLLRRMKDDVLQ-----DLPPKI 1526
Query: 745 IMLKQVDFTDEERDFY-----SQLEINSRDQFKEYAAAGTVKQNYV----NILLMLLRLR 795
I + + + Y S+ ++N D + ++ + ++ L LR
Sbjct: 1527 IQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVISTASTQEDEEKPKLKATGHVFQALQYLR 1586
Query: 796 QACDHPLLV 804
+ C+HP LV
Sbjct: 1587 KLCNHPALV 1595
Score = 94 (38.1 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 345 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 404
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1232 GIPDPPSMSEDLIRQKAR-ERHFLEQLLDGRKLENYKIPVP---IKAELRKYQQDGVNWL 1287
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ +I ++
Sbjct: 1288 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1315
Score = 79 (32.9 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 563
++VVCP ++ W +E+ K SK L+ L Y G + R + ++ K ++++ +Y +V
Sbjct: 1339 SIVVCPPTLTGHWVDEV-GKFCSKEFLNPLHYTGPPTERARLQHQVKKHNLIVASYDVVR 1397
Query: 564 MEV 566
+V
Sbjct: 1398 NDV 1400
Score = 53 (23.7 bits), Expect = 9.4e-14, Sum P(3) = 9.4e-14
Identities = 27/96 (28%), Positives = 40/96 (41%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKS----HVDDEPDICIL-EDISQPARS 304
+K+D+ ++ + + + LSP +Q KS +VDD ED +P
Sbjct: 1514 MKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVNVDDVISTASTQEDEEKPKLK 1573
Query: 305 NQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 340
V + L R C NH AL V+T QH Y
Sbjct: 1574 ATGHVF-QALQYLRKLC-NHP-AL---VLTPQHPEY 1603
Score = 39 (18.8 bits), Expect = 2.5e-30, Sum P(5) = 2.5e-30
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 162 SFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGR 221
S P K++ Q +IG + ++ + L+ C ICD + S ++ R
Sbjct: 655 SVPVKETVQEYIGGAETVTEEPATRDYVVTRARLMAAKLLGALCSCICDPRLNSSSLELR 714
Score = 38 (18.4 bits), Expect = 1.1e-24, Sum P(5) = 1.1e-24
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 391 VPLLRHQRIALSWMVQKE-TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDN 449
+PLL Q L +Q T+ H + + + T+ T+ + L++ P DDN
Sbjct: 1111 IPLLMEQLPLLCTCLQHPYTAVRHMAARCVGVLSKIA-TMETMNVFLEQVLPWLGAIDDN 1169
Query: 450 KRQ 452
+Q
Sbjct: 1170 TKQ 1172
Score = 37 (18.1 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 794 LRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQM 829
LR A D + FDS+ LL+ +A+ L Q+
Sbjct: 1067 LRNALD----AQEFDSSQLLKQGDSVAQDLVNSLQV 1098
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 227 (85.0 bits), Expect = 3.0e-30, Sum P(5) = 3.0e-30
Identities = 51/134 (38%), Positives = 81/134 (60%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ +MLD+L L Q++RLDG++ R +A+ FN E
Sbjct: 808 LKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFC 867
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ +A V++ D WNP + QA RAHRIGQ + V++ RL K TVE
Sbjct: 868 FLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 927
Query: 1119 DRILALQQKKREMV 1132
+ I+ ++ K++MV
Sbjct: 928 EDII--ERAKKKMV 939
Score = 192 (72.6 bits), Expect = 3.0e-30, Sum P(5) = 3.0e-30
Identities = 54/180 (30%), Positives = 94/180 (52%)
Query: 626 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685
G L + W + +DEA +KN + + + R+ R ++GTP+QN++ +L+S FL
Sbjct: 609 GVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFL 668
Query: 686 RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745
D F ++ F + K GY+ L VL+ +LRR K D E +LP KV
Sbjct: 669 MSDKFESWEDF----EDEHGKGRDNGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVE 719
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
+ +VD + +++ FY I +R+ FK + GT + + L +++ L++ C+H L+K
Sbjct: 720 QILRVDMSAQQKQFYKW--ILTRN-FKALSK-GT-RGSSSGFLNIVMELKKCCNHAFLIK 774
Score = 73 (30.8 bits), Expect = 3.0e-30, Sum P(5) = 3.0e-30
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q ++W+ S C+ ILAD+ GLGKTI TI+ +
Sbjct: 492 YQLDGVNWLAH---SWCRCNSVILADEMGLGKTIQTISFL 528
Score = 54 (24.1 bits), Expect = 3.0e-30, Sum P(5) = 3.0e-30
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG---SSRT-KD-----P-CELAKFDVVI 556
+VV P S L W E T ++V+VY G S +T +D P + KF+ ++
Sbjct: 542 IVVVPLSTLTSWQREFD---TWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALL 598
Query: 557 TTYSIV 562
TTY I+
Sbjct: 599 TTYEIL 604
Score = 37 (18.1 bits), Expect = 3.0e-30, Sum P(5) = 3.0e-30
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 264 ASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDIS----QPARSN 305
+S +K P + N +D K ++ PD+ + S +PAR N
Sbjct: 79 SSAQVKDKPVRKKDNLADVKKMWEEHPDVYGVRRSSRSRQEPARLN 124
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 230 (86.0 bits), Expect = 3.4e-30, Sum P(4) = 3.4e-30
Identities = 55/140 (39%), Positives = 80/140 (57%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G+K ++FS +MLD+LE L + RLDG+ R V DFN P V ++S
Sbjct: 544 GDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLIST 603
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA LGLN+V+A V++ D WNP+ + QA DR+ R GQ R V V RL ++E+ +
Sbjct: 604 KAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYT 663
Query: 1124 LQQKKREM--VASAFGEDET 1141
Q K+++ +A A G+ ET
Sbjct: 664 RQVYKQQLSNIAVA-GKMET 682
Score = 121 (47.7 bits), Expect = 3.4e-30, Sum P(4) = 3.4e-30
Identities = 34/118 (28%), Positives = 59/118 (50%)
Query: 624 VAGP-LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYF 682
+ GP L+ + W V+ DEA +KN ++++ AC ++ K+R L+GT +QN I +L++ F
Sbjct: 258 IQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLF 317
Query: 683 RFLRYDPFAVYKSFCSMIKVPISKN-----PV-------KGYKKLQAVLKTIMLRRTK 728
++ + F P+ P K + L ++L+ MLRRTK
Sbjct: 318 EWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTK 375
Score = 91 (37.1 bits), Expect = 3.4e-30, Sum P(4) = 3.4e-30
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
LL HQR + +M ++ H GGIL DD GLGKTI TIA +
Sbjct: 139 LLEHQREGVKFMYNLYKNN-H--GGILGDDMGLGKTIQTIAFL 178
Score = 78 (32.5 bits), Expect = 3.4e-30, Sum P(4) = 3.4e-30
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 485 NGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 544
+G + +S +E KG P L++CP+S++ W E + V VYHGS+R
Sbjct: 185 DGDAGESC-LLESDKG-PV---LIICPSSIIHNWESEFSRWASF---FKVSVYHGSNRDM 236
Query: 545 --DPCELAKFDVVITTYSIVSMEVP 567
+ + +V++T++ ++ P
Sbjct: 237 ILEKLKARGVEVLVTSFDTFRIQGP 261
Score = 45 (20.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 157 HDGCNSFPF 165
HDGC+S PF
Sbjct: 452 HDGCDSCPF 460
Score = 37 (18.1 bits), Expect = 5.1e-10, Sum P(4) = 5.1e-10
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1125 QQKKREMVASAFGED 1139
Q+K E V++ FG D
Sbjct: 491 QKKDAEFVSTVFGTD 505
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 221 (82.9 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 51/151 (33%), Positives = 82/151 (54%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
GG + ++FSQ T MLD+L+ + Y R+DG++ R A+K+F P + V ++S
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGKQP-IFVFLLS 414
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 415 TRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVY 474
Query: 1123 ALQQKKREMVASAF--GEDETGGQQTRLTVD 1151
K ++ G G Q+ D
Sbjct: 475 RKAASKLQLTNMVIEGGHFTLGAQKPAAEAD 505
Score = 140 (54.3 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 48/183 (26%), Positives = 78/183 (42%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L W + +DEA +KN + + R R L+GTPIQN++ +LYS +
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEP 216
Query: 688 DPFA--VYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745
D F + F + I K K +L +L+ +LRR K + LP K
Sbjct: 217 DLFCREQVEDFVQCYQ-DIEKES-KSASELHRLLRPFLLRRVKAQVAT-----ELPKKTE 269
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
++ + ++ +Y + + D F+ A QN +L +LR+ DHP L
Sbjct: 270 VVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQN------VLTQLRKCVDHPYLFD 323
Query: 806 GFD 808
G +
Sbjct: 324 GVE 326
Score = 82 (33.9 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 436
G+ + L +Q ++W+VQ H G IL D+ GLGKT TIAL++
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHGQNGCILGDEMGLGKTCQTIALLI 80
Score = 78 (32.5 bits), Expect = 4.1e-30, Sum P(4) = 4.1e-30
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-----RTKDPCELAKFDVVITTYSI 561
L++CP SVL W EE+ + G LS + Y G R +D + + F V++TTY I
Sbjct: 93 LILCPLSVLSNWKEEMER--FAPG-LSCVTYTGDKEERARRQQDLRQESGFHVLLTTYEI 149
Score = 37 (18.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 164 PFKDSGQSFIGL----SPSLLSQNQVVHAKEEHEDLILESKRA 202
P ++S Q L P L + QV + ++D+ ESK A
Sbjct: 199 PIQNSLQELYSLLSVVEPDLFCREQVEDFVQCYQDIEKESKSA 241
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 213 (80.0 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 384 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 443
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 444 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 495
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 496 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLING 550
Query: 807 FDSNSL 812
+ L
Sbjct: 551 AEEKIL 556
Score = 194 (73.4 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1060
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 595 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 653
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 654 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 713
Query: 1121 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1153
+ K + + + + GG QQ +++ V+DL
Sbjct: 714 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 752
Score = 66 (28.3 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 542
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 288 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 343
Query: 543 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 568
+D P + KF VVITT+ ++ + P+
Sbjct: 344 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 383
Score = 65 (27.9 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 39 (18.8 bits), Expect = 2.4e-14, Sum P(4) = 2.4e-14
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1082 DLWWNPTTEDQAIDRAHRIGQTRPV 1106
D++ P TE++A +RI R V
Sbjct: 1317 DIYVEPITEERAARTLYRIELLRKV 1341
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 213 (80.0 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W VV+DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 384 LKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 443
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 444 QQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 495
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 496 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLING 550
Query: 807 FDSNSL 812
+ L
Sbjct: 551 AEEKIL 556
Score = 194 (73.4 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1060
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 595 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 653
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 654 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 713
Query: 1121 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1153
+ K + + + + GG QQ +++ V+DL
Sbjct: 714 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 752
Score = 66 (28.3 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 542
G + +S F+ + G L++ P S + W E R ++ +VYHGS SR
Sbjct: 288 GKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 343
Query: 543 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 568
+D P + KF VVITT+ ++ + P+
Sbjct: 344 QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPE 383
Score = 65 (27.9 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 258 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 39 (18.8 bits), Expect = 2.4e-14, Sum P(4) = 2.4e-14
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1082 DLWWNPTTEDQAIDRAHRIGQTRPV 1106
D++ P TE++A +RI R V
Sbjct: 1317 DIYVEPITEERAARTLYRIELLRKV 1341
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 205 (77.2 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 485 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSR-PDS 543
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 544 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 603
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1153
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 604 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 649
Score = 201 (75.8 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 280 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 339
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 340 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 391
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 392 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 446
Query: 807 FDSNSL 812
+ L
Sbjct: 447 AEEKIL 452
Score = 76 (31.8 bits), Expect = 5.2e-30, Sum P(3) = 5.2e-30
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 438 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 493
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 132 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 191
Query: 494 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 543
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 192 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 247
Query: 544 --KDPCELA-----KFDVVITTYSIVSMEVPK 568
KDP KF +ITT+ ++ + P+
Sbjct: 248 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 279
Score = 66 (28.3 bits), Expect = 5.6e-29, Sum P(3) = 5.6e-29
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 154 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 193
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 207 (77.9 bits), Expect = 5.2e-30, Sum P(5) = 5.2e-30
Identities = 63/181 (34%), Positives = 90/181 (49%)
Query: 984 ISDENEKIAAKCSIDSIKLGGE----KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1039
I D + KI++ + +K+ GE K IVFSQW +L + +L + IQ+R
Sbjct: 1115 IGDFSTKISSVVEL-VLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQFRNK----- 1168
Query: 1040 VFARDKAVKDF-NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1098
+K DF N L V+ ++M L S GLN++ A HV L++ NP E QAI R H
Sbjct: 1169 --CTNKDFDDFKNPLSNVTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIH 1226
Query: 1099 RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1158
R GQ RP V R V TVE+ IL+L + + T +T+D L LF+
Sbjct: 1227 RFGQKRPTKVHRFIVNGTVEENILSLITSADDTTTLS-----THWDLENMTLDSLKKLFI 1281
Query: 1159 V 1159
+
Sbjct: 1282 L 1282
Score = 113 (44.8 bits), Expect = 5.2e-30, Sum P(5) = 5.2e-30
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 503 AAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT--KDPCELAKFDVVITTYS 560
+ T++V P ++ QW EE+ ++ SL VL+Y G T P +LA++DVV+T Y+
Sbjct: 349 SGATIIVSPNAIKMQWFEEIHKHISP--SLKVLLYFGLHSTFWVSPFDLAQYDVVLTDYT 406
Query: 561 IVSMEV 566
I+ E+
Sbjct: 407 ILRNEI 412
Score = 110 (43.8 bits), Expect = 5.2e-30, Sum P(5) = 5.2e-30
Identities = 49/199 (24%), Positives = 87/199 (43%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
PL V W+RV LDEAQ +++ + A L A RW ++GT ID+L F+
Sbjct: 436 PLLMVNWWRVCLDEAQMVESSTSAAAEMVRMLPAINRWAVTGT-----IDELPPLLEFVG 490
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTI--MLRRTKGTLLDGEPIINLPPKV 744
+ N YK + +L+ + L RT + ++ E + +PP+
Sbjct: 491 RPEVCRPPDAWQTVDKAFQLN----YK-CEPLLELLEHSLWRTCKSKVEHE--LGIPPQT 543
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGT------------VKQNYVNILLM-L 791
++ +++ ++ E +Y + + +QF A T + + I+L
Sbjct: 544 EVVHRLELSNVESLYYREEHLKCHEQFLAAVAKHTRHNADNSSCLASISPQLLRIILKPF 603
Query: 792 LRLRQACDHPLLVKGFDSN 810
LR+RQ C P++ F+SN
Sbjct: 604 LRIRQTCSVPVV---FNSN 619
Score = 87 (35.7 bits), Expect = 5.2e-30, Sum P(5) = 5.2e-30
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCS-GGILADDQGLGKTISTIALILKERPPS 442
A DG+ V +H+ + ++E + GGILAD+ GLGKT+ +A++L P
Sbjct: 205 AIDGITRV--FKHKYCLQFYPFEEEIPKISLPPGGILADEMGLGKTVEFLAMLLMNPRPQ 262
Query: 443 FRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYC 480
+D Q L+E + + + + K++ +C
Sbjct: 263 DSYRNDYWHQ----RLEEFSDEVPLKRSRISKKDEVFC 296
Score = 56 (24.8 bits), Expect = 5.2e-30, Sum P(5) = 5.2e-30
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 827 RQMYLLNCLEASL-AICGICNDPPEDA-VVSICGHVFCNQCI 866
R YL + E S C IC + V+ +CGH C C+
Sbjct: 1036 RLKYLKHLKEDSADKPCPICQTQDDVRYVMMVCGHFVCQHCL 1077
Score = 41 (19.5 bits), Expect = 4.8e-23, Sum P(5) = 4.8e-23
Identities = 23/121 (19%), Positives = 50/121 (41%)
Query: 638 LDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 697
LD ++ NH+T + A W + + + ++ ++++ S L + ++ +
Sbjct: 769 LDLLSTMVNHKTSLHDAIWN-KVRDDFFRQNISVER-LENVNSMAGMLYF--MDIWHNKL 824
Query: 698 SMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 757
+K + + ++ L+ V++ G LL E IIN V + D D +
Sbjct: 825 QNLKSTL----IAEFEFLKGVMQQACEAIKTGVLLSME-IINFIENVTVCHLTDILDANK 879
Query: 758 D 758
D
Sbjct: 880 D 880
Score = 38 (18.4 bits), Expect = 1.4e-12, Sum P(5) = 1.4e-12
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 999 SIKLGGEKAIVFSQWTKMLDLLEASLK 1025
S++ G K+I+ TK+ ++E LK
Sbjct: 1105 SVRPGAHKSIIGDFSTKISSVVELVLK 1131
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 205 (77.2 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1288 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1346
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1347 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1406
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1153
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1407 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1452
Score = 202 (76.2 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1083 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1142
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1143 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1194
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1195 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1249
Query: 807 FDSNSL 812
+ L
Sbjct: 1250 AEEKIL 1255
Score = 74 (31.1 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 541
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 987 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1042
Query: 542 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 568
RT KDP KF +ITT+ ++ + P+
Sbjct: 1043 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1082
Score = 64 (27.6 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 957 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 996
Score = 42 (19.8 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 1089 TEDQAIDRAH----RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1140
+E++A D+A + G+T S + T+E IL + + E + S G DE
Sbjct: 2922 SEEKAADKAEGGPCKDGETLEGSDAEENLDKTIESSILEDEVAQGEELDSLEGGDE 2977
Score = 37 (18.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 969 PGDSNDLHGGDTLD 982
PG ND HG +D
Sbjct: 127 PGMQNDRHGQSFVD 140
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 205 (77.2 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1289 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1347
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1348 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1407
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1153
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1408 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1453
Score = 202 (76.2 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1084 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1143
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1144 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1195
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1196 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1250
Query: 807 FDSNSL 812
+ L
Sbjct: 1251 AEEKIL 1256
Score = 74 (31.1 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 541
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 988 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1043
Query: 542 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 568
RT KDP KF +ITT+ ++ + P+
Sbjct: 1044 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1083
Score = 64 (27.6 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 958 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 997
Score = 48 (22.0 bits), Expect = 4.6e-14, Sum P(4) = 4.6e-14
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1088 TTEDQAIDRAH----RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1140
T+E++A D+A + G+T S + TVE IL + + E + S G DE
Sbjct: 2922 TSEEKAADKAEGGPCKDGETLEGSDAEENLDKTVESSILEDEVAQGEELDSLEGGDE 2978
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 213 (80.0 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 57/186 (30%), Positives = 97/186 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 586 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 645
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 646 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 697
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 698 IEVELTNIQKKYYRAILEKN----FS-FLSKGANQHNMPNLINTMMELRKCCNHPYLISG 752
Query: 807 FDSNSL 812
+ L
Sbjct: 753 AEEKIL 758
Score = 194 (73.4 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1060
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 797 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 855
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 856 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 915
Query: 1121 ILALQQKK----REMVASAFGEDETGGQQ--TRLTVDDL 1153
+ K + ++ + T G Q +++ V+DL
Sbjct: 916 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 954
Score = 71 (30.1 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 542
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 490 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 545
Query: 543 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 568
+D P + KF VVITT+ ++ + P+
Sbjct: 546 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 585
Score = 65 (27.9 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 460 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 499
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 205 (77.2 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1298 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1356
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1357 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1416
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1153
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1417 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1462
Score = 202 (76.2 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1093 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1152
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1153 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1204
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1205 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1259
Query: 807 FDSNSL 812
+ L
Sbjct: 1260 AEEKIL 1265
Score = 74 (31.1 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 541
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 997 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1052
Query: 542 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 568
RT KDP KF +ITT+ ++ + P+
Sbjct: 1053 RTIQSYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1092
Score = 64 (27.6 bits), Expect = 5.3e-30, Sum P(4) = 5.3e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 967 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1006
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 211 (79.3 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 56/166 (33%), Positives = 85/166 (51%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 717 LPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSK-PDS 775
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ + V V RL +
Sbjct: 776 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTR 835
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGG--QQTRLTVDDL 1153
N+ E DR L L K + + + E GG Q ++ ++DL
Sbjct: 836 NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDL 881
Score = 200 (75.5 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 57/188 (30%), Positives = 96/188 (51%)
Query: 626 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685
G L + W V++DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 510 GELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFL 569
Query: 686 RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745
F +F ++ V+ KLQA+LK +MLRR K D E L PK
Sbjct: 570 EPLRFPSESTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--KLAPKEE 621
Query: 746 MLKQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
+ +V+ T+ ++ +Y LE N F + + G + N N++ ++ LR+ C+HP L+
Sbjct: 622 TIIEVELTNIQKKYYRAILEKN----FS-FLSKGAGQTNVPNLVNTMMELRKCCNHPYLI 676
Query: 805 KGFDSNSL 812
KG + L
Sbjct: 677 KGAEEKIL 684
Score = 67 (28.6 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q L+W++ + +C ILAD+ GLGKTI +I +
Sbjct: 386 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 425
Score = 62 (26.9 bits), Expect = 1.7e-29, Sum P(4) = 1.7e-29
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
G + +S F+ + G L++ P S + W E R ++V+VYHGS
Sbjct: 416 GKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWT----DINVVVYHGS 467
Score = 47 (21.6 bits), Expect = 5.4e-30, Sum P(4) = 5.4e-30
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 245 KELDGVKEDMEAEIKTRSMASHLL-KLSPESIQSN-SSDCKSHVDDEPDICILEDISQPA 302
K+ D K +++K ++ L+ L + + N SSD S + P + + SQ
Sbjct: 101 KDKDSKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKR 160
Query: 303 RSNQSL 308
RSN+ +
Sbjct: 161 RSNRQI 166
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 194 (73.4 bits), Expect = 5.4e-30, Sum P(5) = 5.4e-30
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ ++ R L+GTP+QN + +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F + F S K ++L VLK +LRR K D E +LPPK +
Sbjct: 365 FNSAEDFDSWFDTKNCLGDQKLVERLHTVLKPFLLRRIK---TDVEK--SLPPKKEIKIY 419
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ + +R++Y+++ + D +AG K + + +L +L++LR+ C+HP L G
Sbjct: 420 LGLSKMQREWYTKILMKDIDVLN---SAG--KMDKMRLLNILMQLRKCCNHPYLFDG 471
Score = 188 (71.2 bits), Expect = 5.4e-30, Sum P(5) = 5.4e-30
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 1021 EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHV 1078
E LKD I + G+ ++A++ FN +P S + ++S +A LG+N+ +A V
Sbjct: 545 EEILKDFKIIFHEYQGS------NEAIEAFN-IPNSSKFIFMLSTRAGGLGINLASADVV 597
Query: 1079 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+L D WNP + QA+DRAHRIGQ +PV V RL NTVE+RI+
Sbjct: 598 ILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIV 641
Score = 94 (38.1 bits), Expect = 1.6e-20, Sum P(5) = 1.6e-20
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
+S+ + + + +K G + ++FSQ T++LD+LE +Y RLDG R
Sbjct: 485 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 544
Query: 1044 DKAVKDFNTL 1053
++ +KDF +
Sbjct: 545 EEILKDFKII 554
Score = 91 (37.1 bits), Expect = 5.4e-30, Sum P(5) = 5.4e-30
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+P V PL +Q L+W++ + ++ GILAD+ GLGKT+ TIAL+
Sbjct: 177 SPSYVKGGPLRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 59 (25.8 bits), Expect = 5.4e-30, Sum P(5) = 5.4e-30
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SRT---KDPCELAKFDVVITTYSI 561
+V+ P S L W E + V S L V+ + G +R +D ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 562 VSME 565
V E
Sbjct: 296 VIKE 299
Score = 42 (19.8 bits), Expect = 2.4e-15, Sum P(5) = 2.4e-15
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ E E
Sbjct: 879 ANEKYGRDDIDNIAREVE 896
Score = 37 (18.1 bits), Expect = 5.4e-30, Sum P(5) = 5.4e-30
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 178 SLLSQNQVVHAK---EEHEDLILESKR 201
SL+S H + EE E+L+ ES++
Sbjct: 140 SLISVGDYRHRRTEQEEDEELLSESRK 166
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 229 (85.7 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 49/134 (36%), Positives = 80/134 (59%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-V 1058
+K G + ++FSQ MLD+L+ L+ +RLDG+M R +A+ +N
Sbjct: 723 LKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFA 782
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA+ RAHRIGQT+ V++ RL K +VE
Sbjct: 783 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVE 842
Query: 1119 DRILALQQKKREMV 1132
+ I+ ++ KR++V
Sbjct: 843 EEIV--ERAKRKLV 854
Score = 181 (68.8 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 48/182 (26%), Positives = 94/182 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L+ + W +++DEA +KN + + ++ R + ++GTP+QN++ +L++ F+
Sbjct: 527 LSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMP 586
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+ F ++ F + +++ KG L L+ +LRR K D E +LPPK +
Sbjct: 587 EKFDCWEEF----ETAHNESNHKGISALHKKLEPFLLRRVKK---DVEK--SLPPKTEQI 637
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+VD T ++ FY L N R+ K G++ +VN+++ L++ C+H L +
Sbjct: 638 LRVDMTAHQKQFYKWILTKNYRELSK--GVKGSIN-GFVNLVM---ELKKCCNHASLTRQ 691
Query: 807 FD 808
+D
Sbjct: 692 YD 693
Score = 76 (31.8 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 22/52 (42%), Positives = 28/52 (53%)
Query: 386 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGG--ILADDQGLGKTISTIALI 435
DG L +Q L+WMV C G ILAD+ GLGKTI +I+L+
Sbjct: 398 DGESTHKLRDYQLEGLNWMVYA-----WCKGNSSILADEMGLGKTIQSISLL 444
Score = 49 (22.3 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1043 RDKAVKDFNTLPEVSVMIMSLKAASLGLN 1071
+ KAV +F T+PE+ I S + S+ LN
Sbjct: 1018 KKKAVGNF-TIPEIKRFIKSFRKFSMPLN 1045
Score = 44 (20.5 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 556
LVV P S + W +E ++++VY G ++D + K + ++
Sbjct: 458 LVVVPLSTMAAWQKEFAQWAPE---MNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAIL 514
Query: 557 TTYSIV 562
TTY I+
Sbjct: 515 TTYEIL 520
Score = 39 (18.8 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 379 NAEASAP---DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQG 424
+ E S P + +L V + HQ+ W++ K L S G+ G
Sbjct: 625 DVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYREL--SKGVKGSING 671
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 227 (85.0 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 50/160 (31%), Positives = 87/160 (54%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-E 1055
+ K G + ++FSQ +++LD+LE +Y R+DG+ S R +A+ ++N E
Sbjct: 462 LKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSE 521
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
+ +++ +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ + V V R +
Sbjct: 522 KFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEK 581
Query: 1116 TVEDRIL--ALQQKKREMVASAFGEDETGGQQTRLTVDDL 1153
+E+++L A Q+ + + + G + DDL
Sbjct: 582 AIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDL 621
Score = 147 (56.8 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K W +V+DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLP 315
Query: 688 DPFAVYKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPII 738
D F F S + K +L +L +LRR K D E
Sbjct: 316 DVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKA---DVEK-- 370
Query: 739 NLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV--KQNYVNILLMLLRLRQ 796
+L PK+ + TD + ++Y +L D A G V ++ +L ++++LR+
Sbjct: 371 SLLPKIETNVYIGMTDMQVEWYKRLLEKDID-----AVNGVVGKREGKTRLLNIVMQLRK 425
Query: 797 ACDHPLLVKG 806
C+HP L G
Sbjct: 426 CCNHPYLFDG 435
Score = 78 (32.5 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 377 QPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
Q +P + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 123 QHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRL---SGILADEMGLGKTLQTISFL 178
Score = 71 (30.1 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-----SSRTKDPCELAKFDVVITTYSI 561
+V+ P S L W E K T ++V+V G +S KD AKFDV+IT++ +
Sbjct: 192 IVIVPKSTLDNWRREFA-KWTP--DVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 562 VSME 565
+ E
Sbjct: 249 ILRE 252
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 227 (85.0 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 50/160 (31%), Positives = 87/160 (54%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-E 1055
+ K G + ++FSQ +++LD+LE +Y R+DG+ S R +A+ ++N E
Sbjct: 462 LKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSE 521
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
+ +++ +A LG+N+ +A V+L D WNP + QA+DRAHRIGQ + V V R +
Sbjct: 522 KFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEK 581
Query: 1116 TVEDRIL--ALQQKKREMVASAFGEDETGGQQTRLTVDDL 1153
+E+++L A Q+ + + + G + DDL
Sbjct: 582 AIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDL 621
Score = 147 (56.8 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K W +V+DEA IKN + +++ ++ R ++GTP+QN + +L++ FL
Sbjct: 256 LQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLP 315
Query: 688 DPFAVYKSFCSMIKVPIS---------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPII 738
D F F S + K +L +L +LRR K D E
Sbjct: 316 DVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKA---DVEK-- 370
Query: 739 NLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV--KQNYVNILLMLLRLRQ 796
+L PK+ + TD + ++Y +L D A G V ++ +L ++++LR+
Sbjct: 371 SLLPKIETNVYIGMTDMQVEWYKRLLEKDID-----AVNGVVGKREGKTRLLNIVMQLRK 425
Query: 797 ACDHPLLVKG 806
C+HP L G
Sbjct: 426 CCNHPYLFDG 435
Score = 78 (32.5 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 377 QPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
Q +P + L +Q L+W++ + L GILAD+ GLGKT+ TI+ +
Sbjct: 123 QHTVMTESPSYIKEGKLREYQIQGLNWLISLYENRL---SGILADEMGLGKTLQTISFL 178
Score = 71 (30.1 bits), Expect = 5.7e-30, Sum P(4) = 5.7e-30
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-----SSRTKDPCELAKFDVVITTYSI 561
+V+ P S L W E K T ++V+V G +S KD AKFDV+IT++ +
Sbjct: 192 IVIVPKSTLDNWRREFA-KWTP--DVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEM 248
Query: 562 VSME 565
+ E
Sbjct: 249 ILRE 252
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 219 (82.2 bits), Expect = 6.6e-30, Sum P(4) = 6.6e-30
Identities = 51/150 (34%), Positives = 83/150 (55%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G + ++FSQ T+MLD+L+ + Y R+DG++ R A+K+F P V V ++S
Sbjct: 364 GHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-VFVFLLST 422
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
+A +G+N+ AA V+ +D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 423 RAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYR 482
Query: 1124 LQQKKREMVASAF--GEDETGGQQTRLTVD 1151
K ++ + G G Q+ D
Sbjct: 483 KAASKLQLTNAIIEGGHFTLGAQKPAADAD 512
Score = 136 (52.9 bits), Expect = 6.6e-30, Sum P(4) = 6.6e-30
Identities = 47/176 (26%), Positives = 77/176 (43%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F
Sbjct: 170 WSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPK 229
Query: 693 YK--SFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
+ F + I K +L +L+ +LRR K E LP K ++
Sbjct: 230 EQVGDFVQRYQ-DIEKESDSA-SELHKLLQPFLLRRVKA-----EVATELPKKTEVVLYH 282
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+ ++ +Y + + D F+ A QN +L +LR+ DHP L +G
Sbjct: 283 GMSALQKKYYKAILMKDLDAFESEMAKKVKLQN------VLSQLRKCVDHPYLFEG 332
Score = 84 (34.6 bits), Expect = 6.6e-30, Sum P(4) = 6.6e-30
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILADDQGLGKTISTIALIL 436
G+ + L +Q ++W+ + HC G IL D+ GLGKT TIAL +
Sbjct: 42 GLTGIRLRSYQLEGVNWLAR----CFHCQNGCILGDEMGLGKTCQTIALFI 88
Score = 80 (33.2 bits), Expect = 6.6e-30, Sum P(4) = 6.6e-30
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-----DPCELAKFDVVITTYSI 561
L++CP SVL W EE+ + G LS ++Y G + D + ++F V++TTY I
Sbjct: 101 LILCPLSVLSNWTEEMER--FAPG-LSCVMYAGDKEERARLQQDLKQESRFHVLLTTYEI 157
Score = 43 (20.2 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 245 KELDGVKEDMEAEIKTRSMASHLLK 269
K+LD + +M ++K +++ S L K
Sbjct: 298 KDLDAFESEMAKKVKLQNVLSQLRK 322
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 212 (79.7 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 57/186 (30%), Positives = 96/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 698
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 699 IEVELTNIQKKYYRAILEKN----FS-FLTKGANQHNMPNLINTMMELRKCCNHPYLING 753
Query: 807 FDSNSL 812
+ L
Sbjct: 754 AEEKIL 759
Score = 194 (73.4 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 52/159 (32%), Positives = 81/159 (50%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1060
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 856
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1121 ILALQQKKREMVASAFGE-DETGG----QQ-TRLTVDDL 1153
+ K + + + + GG QQ +++ V+DL
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDL 955
Score = 71 (30.1 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 542
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 543 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 568
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 37 (18.1 bits), Expect = 5.7e-14, Sum P(4) = 5.7e-14
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 902 SQRQPGQEIPTDYSDSKLVEAPSCE 926
SQ++ ++ D +S APSCE
Sbjct: 2652 SQKRKKKKTKGDNPNSHPEPAPSCE 2676
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 212 (79.7 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 57/186 (30%), Positives = 96/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 698
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 699 IEVELTNIQKKYYRAILEKN----FS-FLTKGANQHNMPNLINTMMELRKCCNHPYLING 753
Query: 807 FDSNSL 812
+ L
Sbjct: 754 AEEKIL 759
Score = 194 (73.4 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1060
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 856
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1121 ILALQQKK----REMVASAFGEDETGGQQ--TRLTVDDL 1153
+ K + ++ + T G Q +++ V+DL
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 955
Score = 71 (30.1 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 542
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 543 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 568
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 212 (79.7 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 57/186 (30%), Positives = 96/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L K+ W V++DEA +KN ++ + + + L+GTP+QN++++L+S FL
Sbjct: 587 LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEP 646
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ VK KLQ++LK +MLRR K D E NL PK +
Sbjct: 647 SQFPSETAFLEEFGDLKTEEQVK---KLQSILKPMMLRRLKD---DVEK--NLAPKQETI 698
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + G + N N++ ++ LR+ C+HP L+ G
Sbjct: 699 IEVELTNIQKKYYRAILEKN----FS-FLTKGANQHNMPNLINTMMELRKCCNHPYLING 753
Query: 807 FDSNSL 812
+ L
Sbjct: 754 AEEKIL 759
Score = 194 (73.4 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMI 1060
GG K ++FSQ + LD+LE L Y R+DG + R A+ F P+ V +
Sbjct: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFL 856
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +N+ E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 1121 ILALQQKK----REMVASAFGEDETGGQQ--TRLTVDDL 1153
+ K + ++ + T G Q +++ V+DL
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDL 955
Score = 71 (30.1 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 28/100 (28%), Positives = 45/100 (45%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS--SR 542
G + +S F+ + R G L++ P S + W E R ++ +VYHGS SR
Sbjct: 491 GKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWT----EMNAIVYHGSQISR 546
Query: 543 T---------KD----PCE-LAKFDVVITTYSIVSMEVPK 568
+D P + KF VVITT+ ++ + P+
Sbjct: 547 QMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPE 586
Score = 65 (27.9 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 203 (76.5 bits), Expect = 7.3e-30, Sum P(4) = 7.3e-30
Identities = 48/147 (32%), Positives = 81/147 (55%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-------- 1055
G + ++FSQ T LD+L+ ++ Y RLDG++ R A+K+F+ E
Sbjct: 393 GHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVD 452
Query: 1056 ---VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1112
V ++S +A +GLN+VAA V+ + WNP + QA+ RAHRIGQ V + L
Sbjct: 453 GSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLV 512
Query: 1113 VKNTVEDRILALQQKKREMVASAFGED 1139
+++VE+ IL ++K ++ + G++
Sbjct: 513 TEHSVEEVILRRAERKLQLSHNVVGDN 539
Score = 185 (70.2 bits), Expect = 7.3e-30, Sum P(4) = 7.3e-30
Identities = 51/189 (26%), Positives = 90/189 (47%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWG-LRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
L+++ W ++DEAQ +KN + + RR ++GTPIQN + +L++ F
Sbjct: 178 LSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCM 237
Query: 687 YDPFAVYKSFCSMIKVP---IS----KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
F F S K +S N + YK L+ +L MLRRTK L++ ++
Sbjct: 238 PLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLV- 296
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
LPP + V ++ Y+ + E ++ G+ N+ ++ ++++LR+AC
Sbjct: 297 LPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGS---NHTSLQNIVIQLRKACS 353
Query: 800 HPLLVKGFD 808
HP L G +
Sbjct: 354 HPYLFPGIE 362
Score = 67 (28.6 bits), Expect = 7.3e-30, Sum P(4) = 7.3e-30
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 368 LQVAMQGISQPNAEAS--APD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILAD 421
L+ A + I + A+ S PD GV A L HQ +SW++QK ++ + D
Sbjct: 21 LEAAAEIILEKEAKFSNTPPDCSEFGVTAT-LKPHQVEGVSWLIQKYLLGVNVV--LELD 77
Query: 422 DQGLGKTISTIALI 435
GLGKT+ I+ +
Sbjct: 78 QMGLGKTLQAISFL 91
Score = 64 (27.6 bits), Expect = 7.3e-30, Sum P(4) = 7.3e-30
Identities = 29/96 (30%), Positives = 43/96 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAA-GT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-- 541
G + ++ +F+ K R G LV+CP SV W E+ N+ T +L VL Y G
Sbjct: 82 GKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEI-NRFTP--NLEVLRYVGDKYC 138
Query: 542 ---RTKDPCELAK---------FDVVITTYSIVSME 565
K + K FDV++TTY I ++
Sbjct: 139 RLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVD 174
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 251 (93.4 bits), Expect = 8.4e-30, Sum P(3) = 8.4e-30
Identities = 53/151 (35%), Positives = 89/151 (58%)
Query: 982 DN-ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV 1040
DN I D + + + +K G + ++FSQ+T MLD++E L+ + RLDG +V
Sbjct: 645 DNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAV 704
Query: 1041 FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R + DFN + V ++S KA +G+N+ AA ++ D+ +NP + QA DR HR+
Sbjct: 705 NVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRM 764
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
GQ RPV++ RL ++T+E+ IL ++K ++
Sbjct: 765 GQQRPVTIYRLISESTIEEGILMAAEEKLKL 795
Score = 137 (53.3 bits), Expect = 8.4e-30, Sum P(3) = 8.4e-30
Identities = 50/189 (26%), Positives = 91/189 (48%)
Query: 636 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV--- 692
V+ DEA +KN TQ + A+ R L+GTP+QN + +L S F+ FA
Sbjct: 419 VIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPKFFAKSIE 478
Query: 693 -YKS-FCSMIKVPISKNPVKGYKKLQA-----VLKTIMLRRTKGTLLDGEPIINLPPKVI 745
KS F K ++ V +++ Q ++K +LRR K +L NLP K+
Sbjct: 479 DIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRRLKKDVLK-----NLPKKLS 533
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
++++V + +++ +Y +L D + I +M+ +R+ +HPLL++
Sbjct: 534 LVEKVPMSSQQKIYYHELV----DYYSNNKGEVCSSSERAGIAIMM-EMRRIANHPLLMR 588
Query: 806 GFDSNSLLR 814
+ +++ LR
Sbjct: 589 HYFTDANLR 597
Score = 82 (33.9 bits), Expect = 8.4e-30, Sum P(3) = 8.4e-30
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI--LKE 438
L +Q I L+W+ ++ GILAD+ GLGKTI IA + LKE
Sbjct: 289 LADYQIIGLNWLTVMHKQEMN---GILADEMGLGKTIQVIAFLAYLKE 333
Score = 75 (31.5 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 30/93 (32%), Positives = 41/93 (44%)
Query: 486 GSSAKSFNFVEQAK--GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS-- 541
G + + F+ K G A L+V P+S L W E+ L V YHGS
Sbjct: 319 GKTIQVIAFLAYLKENGLSQAAHLIVVPSSTLDNWEAEISRWCPE---LVVEKYHGSQDE 375
Query: 542 RTKDPCELAK-----FDVVITTYSIVSMEVPKQ 569
R + AK FDV++TTY IV P++
Sbjct: 376 RRRMRGRFAKDGFTGFDVLLTTYHIVG-STPEE 407
Score = 40 (19.1 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 161 NSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHE 193
N+ FK + + +I +++S QV +HE
Sbjct: 605 NASSFKKTNEQYIFEELAVMSDFQVYQMMNKHE 637
Score = 38 (18.4 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 806 GFDSNSLLRSSVEMAKKLPQERQMY 830
GF +L ++ + P+ER+M+
Sbjct: 387 GFTGFDVLLTTYHIVGSTPEERKMF 411
Score = 37 (18.1 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 784
D D + ++LE+ +++ + Y AA + ++
Sbjct: 62 DGNDSQTPKKTKLELTVKEKEERYMAAAKISPHF 95
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 259 (96.2 bits), Expect = 8.8e-30, Sum P(5) = 8.8e-30
Identities = 55/131 (41%), Positives = 83/131 (63%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS-- 1057
+K G + ++FSQ KMLD+L ++ Y+RLDGT+ +R A++ +N P+ S
Sbjct: 768 LKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNA-PDSSDF 826
Query: 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117
I+S +A LG+N++ A V+L D WNP + QA+ RAHRIGQT+PVSV RL K+TV
Sbjct: 827 AFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVSKDTV 886
Query: 1118 EDRILALQQKK 1128
E+ ++ + K
Sbjct: 887 EEEVIERARNK 897
Score = 144 (55.7 bits), Expect = 8.8e-30, Sum P(5) = 8.8e-30
Identities = 60/220 (27%), Positives = 106/220 (48%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L++ W + +DEA +KN +Q+ + R ++GTPIQN + +L + FL
Sbjct: 569 LSQFNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELSALLDFL-- 626
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTI---MLRRTKGTLLDGEPIINLPPKV 744
+P V + + N +KL + K I MLRRTK T ++ + LPPK
Sbjct: 627 NPGLVN------VDADMDLNSEAASEKLAELTKAISPFMLRRTK-TKVESD----LPPKT 675
Query: 745 IMLKQVDFTDEERDFYSQLEINSRDQFKEYAAA--GTVKQNYVNILLMLLRLRQACDHPL 802
+ +V+ +D + ++Y + K YAA GT Q ++L +++ L++A +HP
Sbjct: 676 EKIIRVELSDVQLEYYKNILT------KNYAALNEGTKGQKQ-SLLNIMMELKKASNHPF 728
Query: 803 LVKGFDSNSLLRSS--VEMAKKL-PQERQMYLLNCLEASL 839
+ ++ L S+ ++ + L +M LL+ L A L
Sbjct: 729 MFPSAETKILEGSTRREDVLRALITSSGKMMLLDQLLAKL 768
Score = 64 (27.6 bits), Expect = 8.8e-30, Sum P(5) = 8.8e-30
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 418 ILADDQGLGKTISTIALI 435
+LAD+ GLGKT+ T+A I
Sbjct: 468 VLADEMGLGKTVQTVAFI 485
Score = 59 (25.8 bits), Expect = 8.8e-30, Sum P(5) = 8.8e-30
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---ELA--------KFDVV 555
+VV P S + WAE N L+ +VY+G+ +++ EL KF+V+
Sbjct: 499 VVVVPLSTMPSWAETFDNW---SPDLNYVVYNGNEASRNVLKEYELMVDGNPRRPKFNVL 555
Query: 556 ITTYSIVSME 565
+TTY V ++
Sbjct: 556 LTTYEYVLVD 565
Score = 46 (21.3 bits), Expect = 8.8e-30, Sum P(5) = 8.8e-30
Identities = 24/85 (28%), Positives = 33/85 (38%)
Query: 8 GDTIFGDPSSFNFQHLLSSEETA-----TKPKDEEGEF----TTEIACSSSGLVLNAQGG 58
G+T+F P + + A T D EGE T A +SS V
Sbjct: 40 GNTVFQSPEDDAVSESSDNADPADDSYNTDSPDAEGEDDESGTENSAKASSPPVAENSSS 99
Query: 59 PG--KGSMLKVPAIDYLDAKRQCED 81
P +G+ K P++D D RQ D
Sbjct: 100 PQTTRGTKRKSPSVDDADFIRQNPD 124
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 282 (104.3 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 62/160 (38%), Positives = 94/160 (58%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K G K +VFSQ T MLD+L + + RLDG+MS R+K + FNT P+V
Sbjct: 591 LPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDV 650
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ AA V++ D WNP ++ QA DR HRIGQT+PV V RL NT
Sbjct: 651 FLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 710
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYL 1156
++ +I+ KR++ ++ G Q+ L+ N+L
Sbjct: 711 IDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLS-QSKNFL 749
Score = 117 (46.2 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 36/136 (26%), Positives = 65/136 (47%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +++DE IKN + ++ R A + L+GTP+QN + +L+S FL D F
Sbjct: 331 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 390
Query: 693 YKSFCSMIKVP-ISKNP--VKGYKKLQAVLKTIMLRRTKGTL--LDGEPIINLPPKVIML 747
KSF S + +S+ + ++ Q VL + T L L + + +PPK ++
Sbjct: 391 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVV 450
Query: 748 KQVDFTDEERDFYSQL 763
+++ FY+ +
Sbjct: 451 VYAPLCNKQEIFYTAI 466
Score = 68 (29.0 bits), Expect = 9.7e-30, Sum P(3) = 9.7e-30
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 417 GILADDQGLGKT---ISTIALILKERPP 441
GILAD+ GLGKT I+TIAL+++ P
Sbjct: 227 GILADEMGLGKTVQCIATIALMIQRGVP 254
Score = 61 (26.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 24/129 (18%), Positives = 60/129 (46%)
Query: 247 LDGVKEDMEAEIKTRSMASHLLK--LSPESIQSNSSDCKSHVDDEPDICILEDISQPARS 304
L ED+ A+ + +++ H+L L+P ++ SD V + ++ + +
Sbjct: 403 LSETAEDIIAKEREQNVL-HMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEI 461
Query: 305 NQSLVLGKTLSMNRSACSNHSVAL---GKPVVTSQHS-SYSDYPGYPGVPLTGLGGMKSK 360
+ ++ +T++ +C +V L G+P S+ S +YS+ +P + ++ +
Sbjct: 462 FYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPE 521
Query: 361 ASDERLILQ 369
+ ER +++
Sbjct: 522 VNRERTVVE 530
Score = 54 (24.1 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 29/123 (23%), Positives = 58/123 (47%)
Query: 700 IKVPISKNPVKGYKKL---QAVLKTIMLRRTKGTLL---DGEPIINLP---PKVIMLKQV 750
++VP K V Y L Q + T ++ RT + + E + P PK K +
Sbjct: 441 LEVP-PKREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPKRRSRKSI 499
Query: 751 DFTDEERDFYSQLE-----INSRDQFKEYAAAGTVK-QNYVNILL--MLLRLRQACDHPL 802
++++ ++ F S+LE I + G + ++ VN+ L +++ LR+ C+HP
Sbjct: 500 NYSELDQ-FPSELEKLISQIQPEVNRERTVVEGNIPIESEVNLKLRNIMMLLRKCCNHPY 558
Query: 803 LVK 805
+++
Sbjct: 559 MIE 561
Score = 45 (20.9 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 731 LLDGEPIINLPPKVIMLKQV---DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 787
LL G P+ N ++ L D D+ + F S +I S + E A +QN +++
Sbjct: 363 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM 422
Query: 788 LLMLL 792
L +L
Sbjct: 423 LHQIL 427
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 215 (80.7 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 50/150 (33%), Positives = 81/150 (54%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G + ++FSQ T+MLD+L+ L Y R+DG++ R A+K+F P + ++S
Sbjct: 365 GHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLST 423
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
+A +G+N+ AA V+ D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 424 RAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYR 483
Query: 1124 LQQKKREMVASAF--GEDETGGQQTRLTVD 1151
K ++ + G G Q+ D
Sbjct: 484 KAASKLQLTNTIIEGGHFTLGAQKPAADAD 513
Score = 136 (52.9 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 693 --YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
+ F + I K + +L +L+ +LRR K E LP K ++
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKA-----EVATELPRKTEVVIYH 282
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
+ ++ +Y + + D F+ A QN +L +LR+ DHP L G +
Sbjct: 283 GMSALQKKYYKAILMKDLDAFENETAKKVKLQN------VLSQLRKCVDHPYLFDGVE 334
Score = 88 (36.0 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 370 VAMQGISQ---PNAEASAPD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILAD 421
+A+Q S+ P A D G+ + L +Q ++W+ Q HC G IL D
Sbjct: 18 LALQSKSRAEAPRARVQEQDLRQWGLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGD 73
Query: 422 DQGLGKTISTIALIL 436
+ GLGKT TIAL +
Sbjct: 74 EMGLGKTCQTIALFI 88
Score = 78 (32.5 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---EL---AKFDVVITTYS 560
L++CP SVL W EE+ + G LS + Y G + K C +L ++F V++TTY
Sbjct: 101 LILCPLSVLSNWKEEMER--FAPG-LSCVTYAGD-KDKRACLQQDLKQESRFHVLLTTYE 156
Query: 561 I 561
I
Sbjct: 157 I 157
Score = 44 (20.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 44/184 (23%), Positives = 72/184 (39%)
Query: 171 SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGS 230
SF+ P L S+ QV + ++D+ ES+ A ++ R ++ L
Sbjct: 220 SFV--EPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRV--KAEVATELPRK 275
Query: 231 RQYFPYAQPSTLNKKELDGV-KEDMEA-EIKTRSMASHLLKLSPESIQSNSSDCKSH--V 286
+ Y S L KK + +D++A E +T K+ +++ S C H +
Sbjct: 276 TEVVIYHGMSALQKKYYKAILMKDLDAFENETAK------KVKLQNVLSQLRKCVDHPYL 329
Query: 287 DD--EPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQH--SSYSD 342
D EP+ + D A S + +L K L+ S H V L + Y D
Sbjct: 330 FDGVEPEPFEIGDHLIEA-SGKLHLLDKLLAFLYS--KGHRVLLFSQMTQMLDILQDYLD 386
Query: 343 YPGY 346
Y GY
Sbjct: 387 YRGY 390
Score = 39 (18.8 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 254 MEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKT 313
++ ++K S H+L + E ++S KS P ++ D + + NQS +L KT
Sbjct: 138 LQQDLKQESRF-HVLLTTYEICLKDASFLKSF----PWSVLVVDEAHRLK-NQSSLLHKT 191
Query: 314 LSMNRSACSNHSVALGKPVVTSQHSSYS 341
LS S + G P+ S YS
Sbjct: 192 LSEFSVVFS--LLLTGTPIQNSLQELYS 217
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 253 (94.1 bits), Expect = 1.2e-29, Sum P(5) = 1.2e-29
Identities = 56/165 (33%), Positives = 96/165 (58%)
Query: 981 LDNISD-----ENEKIAAKCSI-DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRL 1034
+DNISD E+ K+ S+ + ++ G + ++FSQ KMLD++E L++ + + RL
Sbjct: 462 IDNISDHTLIEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRNRNFRLLRL 521
Query: 1035 DGTMSVFA-RDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1093
DGT++ A R+K + F T ++ +++ + +G+ + A V++ D WNP T+ QA
Sbjct: 522 DGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQA 581
Query: 1094 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1138
+DRA+RIGQT V + RL TVE++I Q K ++ G+
Sbjct: 582 VDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGD 626
Score = 119 (46.9 bits), Expect = 1.2e-29, Sum P(5) = 1.2e-29
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFA 691
W V+LDEA IK T+ A++ + AK R L+GTP+QN + ++++ F F +
Sbjct: 231 WDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLG 290
Query: 692 VYKSFCSMIKVPIS----KNPVKGYK--------KLQAVLKTIMLRRTK 728
K+F + + PI+ K+ G K L ++K LRRTK
Sbjct: 291 TSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTK 339
Score = 82 (33.9 bits), Expect = 1.2e-29, Sum P(5) = 1.2e-29
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSI 561
TL+V PTS+++ W E K T + V +HGSS+T+ L + V+ITTY +
Sbjct: 157 TLLVMPTSLIKNWVREFA-KWTP--GMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQM 213
Query: 562 V 562
+
Sbjct: 214 L 214
Score = 73 (30.8 bits), Expect = 1.2e-29, Sum P(5) = 1.2e-29
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 416 GGILADDQGLGKTISTIALI 435
GGILADD GLGKTI I+ +
Sbjct: 126 GGILADDMGLGKTIQVISFL 145
Score = 43 (20.2 bits), Expect = 1.2e-29, Sum P(5) = 1.2e-29
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 756 ERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
+ D Y++ S DQ KE T + + + L++ CDHP L+
Sbjct: 391 QEDIYNKFI--SLDQIKELLT--TTRSPLAELTV----LKKLCDHPRLL 431
Score = 43 (20.2 bits), Expect = 4.2e-08, Sum P(5) = 4.2e-08
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 1109 LRLTVKNTVEDRIL-ALQQKKREMVASAFGEDE 1140
+R T +V+D + +++ KKR++++ E+E
Sbjct: 1095 IRSTPNESVDDSFVHSVRTKKRQVISDTEEEEE 1127
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 245 (91.3 bits), Expect = 2.0e-29, Sum P(5) = 2.0e-29
Identities = 49/138 (35%), Positives = 84/138 (60%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G++ ++FSQ+T++LD+L+ +K ++++ R DG+ V R + F ++V ++S
Sbjct: 777 GDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLST 836
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA G+N+ A V+L D+ +NP + QA DRAHR+GQ + V+V + VK+T+E+ I
Sbjct: 837 KAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQR 896
Query: 1124 LQQKKREMVASAFGEDET 1141
L K + A+ G ET
Sbjct: 897 LANAKIALDATLSGNAET 914
Score = 135 (52.6 bits), Expect = 2.0e-29, Sum P(5) = 2.0e-29
Identities = 60/214 (28%), Positives = 98/214 (45%)
Query: 634 FRV-VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
F V V DE +KN ++ R + A R L+GTP+QN + +L S F+ F
Sbjct: 512 FNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVFDY 571
Query: 693 YKSFCSMIKVPISKNPVKGYKKL----QAVLKTIM------LRRTKGTLLDGEPIINLPP 742
+I + K+P +++ Q V + M LRR K +LD LP
Sbjct: 572 GLKSLDVI-FTMKKSPESDFERALLSEQRVSRAKMMMAPFVLRRKKSQVLDA-----LPK 625
Query: 743 KVIMLKQVDFTDEER----DFYSQLEINSR-DQ--FK-EYAAAGTVKQNYVNILLMLLRL 794
K +++ +F++EER DF S+ +NS D+ K + + +L++L
Sbjct: 626 KTRIIEFCEFSEEERRRYDDFASKQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVLVQL 685
Query: 795 RQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ 828
R+ DHP+L + + +LR +MAK + E Q
Sbjct: 686 RKLADHPMLFRIHYKDDILR---QMAKAIMNEPQ 716
Score = 75 (31.5 bits), Expect = 2.0e-29, Sum P(5) = 2.0e-29
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIA 433
I+ P A S PD + L +Q I ++W+ L GILAD+ GLGKT TIA
Sbjct: 374 ITTPPASFS-PD----IKLQDYQIIGINWLYLLYELKL---AGILADEMGLGKTCQTIA 424
Score = 56 (24.8 bits), Expect = 2.0e-29, Sum P(5) = 2.0e-29
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKDPCELAKFDVVITTYS 560
LV+ P S + W E K K L + +Y+GS R + ++V++TTY
Sbjct: 439 LVIAPASTMENWLREFA-KFCPK--LKIELYYGSQVEREEIRERINSNKDSYNVMLTTYR 495
Query: 561 IVS 563
+ +
Sbjct: 496 LAA 498
Score = 44 (20.5 bits), Expect = 2.0e-29, Sum P(5) = 2.0e-29
Identities = 29/126 (23%), Positives = 52/126 (41%)
Query: 115 SSRTKQMVFAKDEGNDDLFPCWSTVSDS-VEPIDEAVGRNS--SYHDGCNSFPFKDSGQS 171
SSR A D+ NDD++ + +D ID A + Y + C++ Q
Sbjct: 200 SSRKTYEPEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCST-------QD 252
Query: 172 FIGLSPSLLSQNQVVHAKEEHEDL--ILESKRAR-FCQEICDGSSSRSPIDGRHLSLNLN 228
++ L++ + + AK DL L K+ R + G ++P+ R + + +
Sbjct: 253 LADMTGCTLAEAEFMVAKRPFPDLESALVVKQPRPVIPKGRRGRREKTPLGPRLVGICME 312
Query: 229 GSRQYF 234
R YF
Sbjct: 313 IMRGYF 318
Score = 40 (19.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 25/110 (22%), Positives = 46/110 (41%)
Query: 163 FPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRH 222
F K S +S +LLS+ +V AK +L K++ ++ D ++ I
Sbjct: 580 FTMKKSPES--DFERALLSEQRVSRAKMMMAPFVLRRKKS----QVLDALPKKTRII-EF 632
Query: 223 LSLNLNGSRQYFPYAQPSTLNKKELDGVKE---DMEAEI-KTRSMASHLL 268
+ R+Y +A ++N + V + D A + K +S A +L
Sbjct: 633 CEFSEEERRRYDDFASKQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVL 682
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 201 (75.8 bits), Expect = 2.1e-29, Sum P(4) = 2.1e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1044 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1103
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1104 TRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1155
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1156 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1210
Query: 807 FDSNSL 812
+ L
Sbjct: 1211 AEEKIL 1216
Score = 200 (75.5 bits), Expect = 2.1e-29, Sum P(4) = 2.1e-29
Identities = 51/166 (30%), Positives = 85/166 (51%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1249 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1307
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1308 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1367
Query: 1115 NTVEDRILALQQKK----REMVASAFGEDET--GGQQ-TRLTVDDL 1153
N+ E + K + ++ S G + G QQ ++ ++DL
Sbjct: 1368 NSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDL 1413
Score = 74 (31.1 bits), Expect = 2.1e-29, Sum P(4) = 2.1e-29
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 541
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 948 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1003
Query: 542 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 568
RT KDP KF +ITT+ ++ + P+
Sbjct: 1004 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1043
Score = 64 (27.6 bits), Expect = 2.1e-29, Sum P(4) = 2.1e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 918 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 957
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 202 (76.2 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 56/180 (31%), Positives = 94/180 (52%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 881 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 940
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F+ F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 941 TQFSSEAEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 992
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 993 IEVELTNIQKKYYRAILEKN----FS-FLTKGASQSNTPNLLNTMMELRKCCNHPYLITG 1047
Score = 200 (75.5 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ ++ GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1086 LPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSR-PDS 1144
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1145 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITR 1204
Query: 1115 NTVEDRILALQQKK----REMVASAFGEDE-TGG--QQ-TRLTVDDL 1153
N+ E + K + ++ S G D G QQ T+ ++DL
Sbjct: 1205 NSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSGPIQQFTKKEIEDL 1251
Score = 67 (28.6 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 25/100 (25%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 544
G + +S F+++ G LV+ P S + W E S ++ +VYHGS ++
Sbjct: 785 GKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWEREFG----SWTQMNTIVYHGSLASR 840
Query: 545 DP-------CELAK---------FDVVITTYSIVSMEVPK 568
C+ +K FD +ITT+ +V + P+
Sbjct: 841 QMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVLSDCPE 880
Score = 64 (27.6 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 755 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSITFL 794
Score = 39 (18.8 bits), Expect = 8.5e-27, Sum P(4) = 8.5e-27
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 415 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 463
SG + + +G TI+ I ++R PS D + ++ED+
Sbjct: 465 SGSLRSRSKGKPSTITPIVGKKRKRNPSSDNSDAEIMASQASPAEDEDS 513
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 220 (82.5 bits), Expect = 2.4e-29, Sum P(5) = 2.4e-29
Identities = 49/123 (39%), Positives = 75/123 (60%)
Query: 1004 GEKAIVFSQWTKMLDLLEA--SLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSV 1058
G KA++F+Q +MLD+LE S KD S + Y R+DGT ++ R V FN V
Sbjct: 667 GYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNN-ESFDV 725
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
+++ + LG+N+ A +++ D WNP+T+ QA +RA RIGQ R VS+ RL V ++E
Sbjct: 726 FLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIE 785
Query: 1119 DRI 1121
++I
Sbjct: 786 EKI 788
Score = 151 (58.2 bits), Expect = 2.4e-29, Sum P(5) = 2.4e-29
Identities = 56/196 (28%), Positives = 87/196 (44%)
Query: 621 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 680
L I + L KV W VLDE I+N ++++ C L+ R LSGTPIQN + +L+S
Sbjct: 451 LRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWS 510
Query: 681 YFRFLRYDPFAVYKSFCSMIKVPIS----KNPVK-----GYK---KLQAVLKTIMLRRTK 728
F F+ F +PI+ N GYK L+ ++ +LRR K
Sbjct: 511 LFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVK 570
Query: 729 GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNIL 788
+ +LP K M+ T +R Y + ++S D ++ N+L
Sbjct: 571 ADVAK-----DLPQKKEMVLFCKLTKYQRSKYLEF-LHSSD-------LNQIQNGKRNVL 617
Query: 789 LMLLRLRQACDHPLLV 804
+ LR+ C+HP L+
Sbjct: 618 FGIDILRKICNHPDLL 633
Score = 88 (36.0 bits), Expect = 2.4e-29, Sum P(5) = 2.4e-29
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 379 NAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
N++ P + ++ L +Q+ + W+ E +C GGI+ D+ GLGKTI IA I
Sbjct: 284 NSQFKIPGEIYSL-LFNYQKTCVQWLY--ELYQQNC-GGIIGDEMGLGKTIQVIAFI 336
Score = 59 (25.8 bits), Expect = 2.4e-29, Sum P(5) = 2.4e-29
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 507 LVVCPTSVLRQWAEELRN 524
L+VCP +V++QW E ++
Sbjct: 350 LIVCPATVMKQWCNEFQH 367
Score = 51 (23.0 bits), Expect = 6.1e-24, Sum P(4) = 6.1e-24
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 403 WMVQKETSSLHCSGGILADDQGLGKTISTIA-LILKERPPSFRTED-DN----KRQLET- 455
W T LH G +A DQ + + LI+ +P F ED N K+ LE+
Sbjct: 368 WWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFSYEDWKNSTRTKKALESS 427
Query: 456 LNLDEEDNGIQVNGLDLV 473
+LD+ + + +G L+
Sbjct: 428 YHLDKLIDKVVTDGHILI 445
Score = 45 (20.9 bits), Expect = 1.1e-18, Sum P(5) = 1.1e-18
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 812 LLRSSVEMAKKLPQERQMYL 831
L R ++AK LPQ+++M L
Sbjct: 566 LRRVKADVAKDLPQKKEMVL 585
Score = 45 (20.9 bits), Expect = 1.1e-18, Sum P(5) = 1.1e-18
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 929 WYNSSKIKAALEVLQSLAKPRGNTVTN-HSLRHSFNG 964
W NS++ K ALE L K VT+ H L ++ G
Sbjct: 414 WKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVG 450
Score = 43 (20.2 bits), Expect = 2.4e-29, Sum P(5) = 2.4e-29
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 5 INTGD-TIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTE 43
I TG T FG + F+ + KDE+ E TE
Sbjct: 146 IRTGKITAFGHKAGFSLDTANREYAKNDEQKDEDFEMATE 185
Score = 37 (18.1 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 979 DTLDNISDENEKIAAKCSID 998
D DN+SD++ +++ K S D
Sbjct: 193 DEDDNLSDQDYQMSGKESED 212
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 234 (87.4 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 50/142 (35%), Positives = 81/142 (57%)
Query: 1006 KAIVFSQWTKMLDLLEASL---KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L + S+ Y RLDG++ R V FN P + V++++
Sbjct: 1640 RILIFCQLKSMLDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLT 1699
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1700 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1759
Query: 1123 ALQQKKREMVASAFGEDETGGQ 1144
LQ+ K + + ++ Q
Sbjct: 1760 GLQKFKMNIANTVISQENASLQ 1781
Score = 118 (46.6 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 39/117 (33%), Positives = 61/117 (52%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1395 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1454
Query: 697 CSMIKVPI--SKNPVKGYKKLQAV---LKTIMLRRTKGTLLDG--EPII-NLPPKVI 745
+ PI S++ ++ +AV + R+ LL E ++ +LPPK+I
Sbjct: 1455 AARYGKPILASRDARSSSREQEAVGVLAMEALHRQVLPFLLRRMKEDVLQDLPPKII 1511
Score = 91 (37.1 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 345 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 404
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1215 GIPDPPNMSEELIQMKAK-ERHFLEQLLDGKKLENYKIPVP---IKAELRKYQQDGVNWL 1270
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ +I ++
Sbjct: 1271 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1298
Score = 78 (32.5 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 563
+LVVCP ++ W +E+ K SK L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1322 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERARLQYQVKRHNLIVASYDVVR 1380
Query: 564 MEV 566
++
Sbjct: 1381 NDI 1383
Score = 58 (25.5 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 27/96 (28%), Positives = 41/96 (42%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVD---DEP--DICILEDISQPARS 304
+KED+ ++ + + + LSP +Q KS DE I + E+ +P
Sbjct: 1498 MKEDVLQDLPPKIIQDYYCVLSPLQVQLYEDFAKSRAKCDIDETVSSISLREETEKPKLK 1557
Query: 305 NQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 340
V + L R C NH AL V+T+QH Y
Sbjct: 1558 ATGHVF-QALQYLRKLC-NHP-AL---VLTTQHPEY 1587
Score = 53 (23.7 bits), Expect = 2.5e-29, Sum P(5) = 2.5e-29
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 148 EAVGRNSSYHDGCNSFPFKDSGQ--SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFC 205
+AV N +D + P + + + + P+ S+ V +A EE + LES FC
Sbjct: 225 DAVEANEKSNDSTDGEPEEKRRKVANVVINQPATDSKTLVENASEEANEWPLES----FC 280
Query: 206 QEICD 210
+E+C+
Sbjct: 281 EEVCN 285
Score = 51 (23.0 bits), Expect = 1.4e-22, Sum P(5) = 1.4e-22
Identities = 34/137 (24%), Positives = 58/137 (42%)
Query: 723 MLRRTKGTLLDGEPIINLPPKVI-----MLK--QVDFTDEERDFYSQLEIN---SRDQFK 772
+LRR K +L +LPPK+I +L QV ++ ++ +I+ S +
Sbjct: 1494 LLRRMKEDVLQ-----DLPPKIIQDYYCVLSPLQVQLYEDFAKSRAKCDIDETVSSISLR 1548
Query: 773 EYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMY-- 830
E +K ++ L LR+ C+HP LV R + ++A R +
Sbjct: 1549 EETEKPKLKATG-HVFQALQYLRKLCNHPALVLTTQHPEYKRITEQLAAHNSSLRDIQHA 1607
Query: 831 -LLNCLEASLAICGICN 846
L+ L+ L CG+ N
Sbjct: 1608 PKLSALKQLLLDCGLGN 1624
Score = 39 (18.8 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 400 ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLD 459
++S + E L +G + Q L K + AL+L + P ++ + QL N
Sbjct: 1544 SISLREETEKPKLKATGHVFQALQYLRKLCNHPALVLTTQHPEYKRITE---QLAAHNSS 1600
Query: 460 EEDNGIQ-VNGLDLVKQESDYCRVVPNGSSAKS 491
D IQ L +KQ C + NG S++S
Sbjct: 1601 LRD--IQHAPKLSALKQLLLDCGL-GNGGSSES 1630
Score = 37 (18.1 bits), Expect = 7.0e-24, Sum P(5) = 7.0e-24
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 428 TISTIALILKERPPSFRTEDDNKRQ---LETLN--LDEEDNGI 465
T+ T+ + L++ P DDN +Q +E L +++ D GI
Sbjct: 1131 TMETMNIFLEQVLPWLGAIDDNTKQEGAIEALACVMEQLDVGI 1173
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 250 (93.1 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 54/136 (39%), Positives = 85/136 (62%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
GG ++FSQ T+MLD+L+ L+ Y RLDG++ R+ A+K+F+T +V + ++S
Sbjct: 351 GGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFST-KDVFIFLLS 409
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
KA +G+N+ AA V+ +D +NP + QA RAHRIGQTRPV V+RL ++T+E+ I
Sbjct: 410 TKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIY 469
Query: 1123 ALQQKKREMVASAFGE 1138
+ K + + E
Sbjct: 470 SRAVSKLRLTDTVIEE 485
Score = 138 (53.6 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 48/179 (26%), Positives = 82/179 (45%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR---YDP 689
W +V+DEA +KN + + + R L+GTPIQN + ++YS F++ + P
Sbjct: 157 WKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLP 216
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
AV + F + I P +L VL+ +LRR K E LP K ++
Sbjct: 217 EAV-EDFVNAY-ADIQTEPAL-VDELHQVLQPFLLRRVKA-----EVAAELPKKTELVVF 268
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
+ ++ +Y + + D F+ T + +L +L++LR+ DHP L G +
Sbjct: 269 HGLSALQKRYYKAILMRDLDAFR------TDQSTKTRLLNVLMQLRKCVDHPYLFDGVE 321
Score = 81 (33.6 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 35/138 (25%), Positives = 64/138 (46%)
Query: 436 LKERPPSFRTEDDNKRQ-LETLNLDEED-NGIQVNGLDLVKQESDYCRVVPN---GSSAK 490
+ E+ S TE+D K+ L ++L +G++ L + Q+ C + G + +
Sbjct: 12 IPEKDKSELTENDLKKWGLGAIHLRPYQLDGVKWLSLCMKNQQG--CILGDEMGLGKTCQ 69
Query: 491 SFNFVEQAKG--RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 548
+ + + A+G + LV+CP +VL W +EL S LSV+ Y G + +
Sbjct: 70 TISLLAYARGSLKMNGPFLVLCPLAVLENWRQELERFCPS---LSVICYTGDKEKRAELQ 126
Query: 549 L-----AKFDVVITTYSI 561
+F V++TTY +
Sbjct: 127 QNLKSDPRFHVLLTTYEM 144
Score = 65 (27.9 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 439
G+ A+ L +Q + W+ + C IL D+ GLGKT TI+L+ R
Sbjct: 29 GLGAIHLRPYQLDGVKWLSLCMKNQQGC---ILGDEMGLGKTCQTISLLAYAR 78
Score = 37 (18.1 bits), Expect = 6.9e-19, Sum P(3) = 6.9e-19
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 812 LLRSSVEMAKKLPQERQMYLLNCLEA 837
L R E+A +LP++ ++ + + L A
Sbjct: 248 LRRVKAEVAAELPKKTELVVFHGLSA 273
Score = 37 (18.1 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 1095 DRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1126
D I +R VS LRLT E R L Q
Sbjct: 462 DTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQ 493
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 205 (77.2 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 537 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSR-PDS 595
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 596 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 655
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1153
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 656 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 701
Score = 201 (75.8 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 332 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 391
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 392 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 443
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 444 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 498
Query: 807 FDSNSL 812
+ L
Sbjct: 499 AEEKIL 504
Score = 76 (31.8 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 438 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 493
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 184 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 243
Query: 494 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 543
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 244 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 299
Query: 544 --KDPCELA-----KFDVVITTYSIVSMEVPK 568
KDP KF +ITT+ ++ + P+
Sbjct: 300 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 331
Score = 66 (28.3 bits), Expect = 3.6e-28, Sum P(3) = 3.6e-28
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 206 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 245
Score = 38 (18.4 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 971 DSNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1002
+ D+ DT + E E + KC + I++
Sbjct: 1431 EETDIADKDTKQDCDAEAETGSVKCELKDIEM 1462
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 204 (76.9 bits), Expect = 3.6e-29, Sum P(3) = 3.6e-29
Identities = 43/133 (32%), Positives = 77/133 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K + ++FSQ T++LD+++ + + Y R+DG+ R + FN + +
Sbjct: 638 LKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFI 697
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A +G+N+ A V+L D +NP + QA+DRAHRIGQ + V V R +N+VE
Sbjct: 698 FLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVE 757
Query: 1119 DRILALQQKKREM 1131
++I+ KK ++
Sbjct: 758 EKIVERAAKKLKL 770
Score = 190 (71.9 bits), Expect = 3.6e-29, Sum P(3) = 3.6e-29
Identities = 64/211 (30%), Positives = 108/211 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N + +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 688 DPFAVYKSFCSMIKVP-ISKNPVKGYK---KLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
F + F ++ + IS N K + +L +LK MLRR K ++ E +LPPK
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLK---VEVEQ--SLPPK 552
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ V + ++ YS + + D A G+ K +NIL+ +LR+ C+HP L
Sbjct: 553 REIYIFVGMSKLQKKLYSDILSKNIDVLN--AMTGS-KNQMLNILM---QLRKCCNHPYL 606
Query: 804 VKGFDS------NSLLRSSVEMA---KKLPQ 825
G + N L+ +S +M+ K LP+
Sbjct: 607 FDGIEEPPYIEGNHLIETSGKMSLLDKLLPR 637
Score = 81 (33.6 bits), Expect = 3.6e-29, Sum P(3) = 3.6e-29
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 433 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 492
A+ILK+ P QLE LN + ++NG+ + E + + S
Sbjct: 309 AIILKQ--PMNINGTMKPYQLEGLNWLYQLYRFKINGI--LADEMGLGKTLQTISLLCYL 364
Query: 493 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--- 549
F + K + ++++CP S L W EE++ T + Y+G+ +
Sbjct: 365 RFNKNIKKK----SIIICPRSTLDNWYEEIKKWCTP---MKAFKYYGNKDQRKELNRNLL 417
Query: 550 -AKFDVVITTYSIV 562
+ FDV++TTY IV
Sbjct: 418 HSDFDVLLTTYEIV 431
Score = 77 (32.2 bits), Expect = 9.4e-29, Sum P(3) = 9.4e-29
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ Q ++ GILAD+ GLGKT+ TI+L+
Sbjct: 325 YQLEGLNWLYQLYRFKIN---GILADEMGLGKTLQTISLL 361
Score = 43 (20.2 bits), Expect = 4.7e-14, Sum P(3) = 4.7e-14
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 812 LLRSSVEMAKKLPQERQMYL 831
L R VE+ + LP +R++Y+
Sbjct: 538 LRRLKVEVEQSLPPKREIYI 557
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 204 (76.9 bits), Expect = 3.6e-29, Sum P(3) = 3.6e-29
Identities = 43/133 (32%), Positives = 77/133 (57%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K + ++FSQ T++LD+++ + + Y R+DG+ R + FN + +
Sbjct: 638 LKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFI 697
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A +G+N+ A V+L D +NP + QA+DRAHRIGQ + V V R +N+VE
Sbjct: 698 FLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVE 757
Query: 1119 DRILALQQKKREM 1131
++I+ KK ++
Sbjct: 758 EKIVERAAKKLKL 770
Score = 190 (71.9 bits), Expect = 3.6e-29, Sum P(3) = 3.6e-29
Identities = 64/211 (30%), Positives = 108/211 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N + +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 688 DPFAVYKSFCSMIKVP-ISKNPVKGYK---KLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
F + F ++ + IS N K + +L +LK MLRR K ++ E +LPPK
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLK---VEVEQ--SLPPK 552
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
+ V + ++ YS + + D A G+ K +NIL+ +LR+ C+HP L
Sbjct: 553 REIYIFVGMSKLQKKLYSDILSKNIDVLN--AMTGS-KNQMLNILM---QLRKCCNHPYL 606
Query: 804 VKGFDS------NSLLRSSVEMA---KKLPQ 825
G + N L+ +S +M+ K LP+
Sbjct: 607 FDGIEEPPYIEGNHLIETSGKMSLLDKLLPR 637
Score = 81 (33.6 bits), Expect = 3.6e-29, Sum P(3) = 3.6e-29
Identities = 34/134 (25%), Positives = 58/134 (43%)
Query: 433 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 492
A+ILK+ P QLE LN + ++NG+ + E + + S
Sbjct: 309 AIILKQ--PMNINGTMKPYQLEGLNWLYQLYRFKINGI--LADEMGLGKTLQTISLLCYL 364
Query: 493 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--- 549
F + K + ++++CP S L W EE++ T + Y+G+ +
Sbjct: 365 RFNKNIKKK----SIIICPRSTLDNWYEEIKKWCTP---MKAFKYYGNKDQRKELNRNLL 417
Query: 550 -AKFDVVITTYSIV 562
+ FDV++TTY IV
Sbjct: 418 HSDFDVLLTTYEIV 431
Score = 77 (32.2 bits), Expect = 9.4e-29, Sum P(3) = 9.4e-29
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ Q ++ GILAD+ GLGKT+ TI+L+
Sbjct: 325 YQLEGLNWLYQLYRFKIN---GILADEMGLGKTLQTISLL 361
Score = 43 (20.2 bits), Expect = 4.7e-14, Sum P(3) = 4.7e-14
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 812 LLRSSVEMAKKLPQERQMYL 831
L R VE+ + LP +R++Y+
Sbjct: 538 LRRLKVEVEQSLPPKREIYI 557
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 252 (93.8 bits), Expect = 3.8e-29, Sum P(4) = 3.8e-29
Identities = 60/186 (32%), Positives = 100/186 (53%)
Query: 973 NDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYR 1032
N + G++L + + + + + ++ GG + ++FSQ TKMLDLLE L+ +Y
Sbjct: 943 NGSYDGNSL--VKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYE 1000
Query: 1033 RLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTED 1091
R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP +
Sbjct: 1001 RIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDI 1060
Query: 1092 QAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF----GEDETGGQQTR 1147
QA RAHRIGQ + V + R + +VE+RI Q KR+M+ + G G T+
Sbjct: 1061 QAFSRAHRIGQNKKVMIYRFVTRASVEERIT--QVAKRKMMLTHLVVRPGLGSKSGSMTK 1118
Query: 1148 LTVDDL 1153
+DD+
Sbjct: 1119 QELDDI 1124
Score = 172 (65.6 bits), Expect = 3.8e-29, Sum P(4) = 3.8e-29
Identities = 58/209 (27%), Positives = 104/209 (49%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R + + L+GTP+QN +++L+
Sbjct: 760 LITIDQAVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELF 819
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 820 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 871
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 872 MPAKTELIVRVELSQMQKKYYKF--ILTRN-FEALNSKGG--GNQVSLLNIMMDLKKCCN 926
Query: 800 HP-----------LLVKG-FDSNSLLRSS 816
HP +L G +D NSL++SS
Sbjct: 927 HPYLFPVAAVEAPVLPNGSYDGNSLVKSS 955
Score = 60 (26.2 bits), Expect = 3.8e-29, Sum P(4) = 3.8e-29
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKT+ TI +
Sbjct: 653 ILADEMGLGKTVQTIVFL 670
Score = 47 (21.6 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 218 IDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKL-SPESIQ 276
+ G L NL + P N L+G E+ A+I L L P ++
Sbjct: 806 LTGTPLQNNLEELFHLLNFLTPERFNN--LEGFLEEF-ADISKEDQIKKLHDLLGPHMLR 862
Query: 277 SNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVAL 328
+D ++ + ++ + ++SQ + +L + S + V+L
Sbjct: 863 RLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSL 914
Score = 46 (21.3 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 675 IDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK-NPVKGYKKLQAVL 719
+DD+ F Y YK+F ++ I+K NP K+ VL
Sbjct: 73 LDDVDYIFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVL 118
Score = 41 (19.5 bits), Expect = 3.8e-29, Sum P(4) = 3.8e-29
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 542 RTKDPCELAKFDVVITTYSIVSME 565
R K ++ KF V++T+Y +++++
Sbjct: 742 RMKKEAQI-KFHVLLTSYELITID 764
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 226 (84.6 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 49/126 (38%), Positives = 75/126 (59%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM-S 1062
G + ++FSQ T+MLD+LE + Y RLDG R++ +++FN + M S
Sbjct: 447 GSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLS 506
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
+A LG+N+ A V++ D WNP + QA+DRAHRIGQ + V V RL ++TVE++I+
Sbjct: 507 TRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIV 566
Query: 1123 ALQQKK 1128
+ K
Sbjct: 567 ERAEVK 572
Score = 166 (63.5 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 51/177 (28%), Positives = 84/177 (47%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
K W +V+DEA IKN +++++ + R ++GTP+QN + +L++ FL D
Sbjct: 247 KFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDV 306
Query: 690 FAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749
F + F +L AVLK +LRR K + E L PK M
Sbjct: 307 FNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEV---EK--RLKPKKEMKIF 361
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
V + +RD+Y+++ + D AG V++ + +LM +LR+ +HP L G
Sbjct: 362 VGLSKMQRDWYTKVLLKDIDVVN---GAGKVEKMRLQNILM--QLRKCTNHPYLFDG 413
Score = 81 (33.6 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+WM+ + ++ GILAD+ GLGKT+ TI+L+
Sbjct: 131 YQIRGLNWMISLYENGIN---GILADEMGLGKTLQTISLL 167
Score = 60 (26.2 bits), Expect = 5.8e-27, Sum P(4) = 5.8e-27
Identities = 29/150 (19%), Positives = 67/150 (44%)
Query: 421 DDQGLGKTISTIALILKERPPSF-RTEDDNKRQLETLN--LDEEDNGIQVNGLDLVKQES 477
D++ L + +T + + P++ ++ + Q+ LN + +NGI NG+ + E
Sbjct: 100 DEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGI--NGI--LADEM 155
Query: 478 DYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVY 537
+ + + +++ K + A +V+ P S L+ W E + S ++ ++
Sbjct: 156 GLGKTL---QTISLLGYLKHFKNQ-AGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGD 211
Query: 538 HGSSRT--KDPCELAKFDVVITTYSIVSME 565
+ T +D ++DV +T+Y + E
Sbjct: 212 QDTRNTFIRDVLMPGEWDVCVTSYEMCIRE 241
Score = 41 (19.5 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 24 LSSEETATKPKDEEG--EFTTEIACSSSG 50
+S +TA EE E T++ A SSSG
Sbjct: 1 MSKTDTAAVEATEENSNETTSDAATSSSG 29
Score = 40 (19.1 bits), Expect = 5.3e-10, Sum P(4) = 5.3e-10
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 972 SNDLHGGDTLDNISDENE 989
+N+ +G D +DNI+ + E
Sbjct: 811 ANEKYGRDDIDNIAKDVE 828
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 221 (82.9 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PE 1055
+ ++ K ++F Q T ++ ++E +Y RLDGT R +K FN E
Sbjct: 341 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSE 400
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
+ ++S +A LGLN+ +A V++ D WNP + QA DRAHRIGQ V VLRL N
Sbjct: 401 YFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN 460
Query: 1116 TVEDRILALQQKK 1128
+VE++ILA + K
Sbjct: 461 SVEEKILAAAKYK 473
Score = 137 (53.3 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 628 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 684
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 122 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 179
Query: 685 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGTLLDG 734
L F +F P + K ++L VL+ +LRR K
Sbjct: 180 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKK----- 234
Query: 735 EPIINLPPKVIMLKQVDFTDEERDFYSQLEINS---RD-QFKEYAAAGTVKQNYVNILLM 790
E LP KV + + D + +R Y ++ D K+ G K ++
Sbjct: 235 EVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK----TLMNT 290
Query: 791 LLRLRQACDHPLLVKGFDSN 810
+++LR+ C+HP + + + +
Sbjct: 291 IMQLRKICNHPYMFQHIEES 310
Score = 92 (37.4 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 6 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 45
Score = 60 (26.2 bits), Expect = 4.3e-29, Sum P(4) = 4.3e-29
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 562
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 59 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 115
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 226 (84.6 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 969 PGDSNDLHGGDT--LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1026
P + N+ G L I + I + ++ G + ++FSQ +MLD+L L
Sbjct: 759 PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 818
Query: 1027 SSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1085
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D W
Sbjct: 819 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 878
Query: 1086 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132
NP + QA RAHRIGQ + V++ RL K TVE+ I+ ++ K++MV
Sbjct: 879 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII--ERAKKKMV 923
Score = 168 (64.2 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 49/183 (26%), Positives = 94/183 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 595 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 654
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+ F ++ F + K GY+ L VL+ +LRR K D E +LP KV +
Sbjct: 655 EKFEFWEDF----EEDHGKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 705
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+V+ + ++ +Y I +R+ +K A GT + + L +++ L++ C+H L+K
Sbjct: 706 LRVEMSALQKQYYKW--ILTRN-YKALAK-GT-RGSTSGFLNIVMELKKCCNHCYLIKPP 760
Query: 808 DSN 810
+ N
Sbjct: 761 EEN 763
Score = 88 (36.0 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 52/201 (25%), Positives = 85/201 (42%)
Query: 241 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 298
+L ++++ G+K+ + K + L K+SPE ++ +C+ + E I+E +
Sbjct: 330 SLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEY--FNCQQELASELNKQYQIVERV 387
Query: 299 ---SQPARSNQSLVLGKTLSMNRSACSNHSVAL-GKPVVTSQHSSYSDYPGYPGVPLTGL 354
+PA SN+ L K + + S CS AL GK S S+ +P
Sbjct: 388 IGNRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKF-QSCIDSFHSRNNSKTIPTREC 446
Query: 355 GGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHC 414
+K + L Q A G N E L +Q L+W+ +
Sbjct: 447 KALKQRPRFVALKKQPAYLG--GENLE-----------LRDYQLEGLNWLAHSWCN--RS 491
Query: 415 SGGILADDQGLGKTISTIALI 435
+ ILAD+ GLGKTI TI+ +
Sbjct: 492 NSVILADEMGLGKTIQTISFL 512
Score = 51 (23.0 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 556
L+V P S L W E ++ + ++V+VY G +++ + KF+ +I
Sbjct: 526 LIVVPLSTLTSWQREF--EIWAP-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 582
Query: 557 TTYSIV 562
TTY I+
Sbjct: 583 TTYEIL 588
Score = 39 (18.8 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 634 FRVVLDEAQSIKNHRTQVARACWGLRAKRRW 664
F+ +D S N +T R C L+ + R+
Sbjct: 425 FQSCIDSFHSRNNSKTIPTRECKALKQRPRF 455
Score = 37 (18.1 bits), Expect = 4.5e-29, Sum P(5) = 4.5e-29
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 14 DPSSFNFQHLLSSEETATKPK 34
+PS FN + SS + PK
Sbjct: 122 EPSRFNIKEEASSGSESGSPK 142
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 205 (77.2 bits), Expect = 4.8e-29, Sum P(5) = 4.8e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1299 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1357
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1358 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1417
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1153
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1418 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1463
Score = 202 (76.2 bits), Expect = 4.8e-29, Sum P(5) = 4.8e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1094 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1153
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1154 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1205
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1206 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1260
Query: 807 FDSNSL 812
+ L
Sbjct: 1261 AEEKIL 1266
Score = 74 (31.1 bits), Expect = 4.8e-29, Sum P(5) = 4.8e-29
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 541
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 998 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1053
Query: 542 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 568
RT KDP KF +ITT+ ++ + P+
Sbjct: 1054 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1093
Score = 64 (27.6 bits), Expect = 4.8e-29, Sum P(5) = 4.8e-29
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 968 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1007
Score = 39 (18.8 bits), Expect = 4.8e-29, Sum P(5) = 4.8e-29
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 242 LNKKELDGVKEDMEAEIKTRSMA 264
LN+ LDG +E E + K RS A
Sbjct: 629 LNRNSLDGSQE--EKKKKKRSKA 649
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 267 (99.0 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 64/189 (33%), Positives = 101/189 (53%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L S + + K + +K GG + ++FSQ TKMLDLLE L++
Sbjct: 1043 PKMPNGMYDGSALTKASGKL-MLLFKM-LKKLKEGGHRVLIFSQMTKMLDLLEDFLENEG 1100
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNT--LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086
+Y R+DG ++ R +A+ FN P+ V ++S +A LG+N+ A V++ D WN
Sbjct: 1101 YKYERIDGGVTGGMRQEAIDRFNAPGAPQF-VFLLSTRAGGLGINLATADTVIIYDSDWN 1159
Query: 1087 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQ 1144
P + QA RAHRIGQ + V + R K +VE+RI + +KK + G G
Sbjct: 1160 PHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKAGS 1219
Query: 1145 QTRLTVDDL 1153
++ +DD+
Sbjct: 1220 MSKQELDDI 1228
Score = 161 (61.7 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 49/184 (26%), Positives = 92/184 (50%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R + + L+GTP+QN +++L+
Sbjct: 864 LITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELF 923
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + +
Sbjct: 924 HLLNFLTPERFNNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----H 975
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ G N V++L +++ L++ C+
Sbjct: 976 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNTRGG--GNQVSLLNVVMDLKKCCN 1030
Query: 800 HPLL 803
HP L
Sbjct: 1031 HPYL 1034
Score = 55 (24.4 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKT+ T +
Sbjct: 758 ILADEMGLGKTVQTAVFL 775
Score = 45 (20.9 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 20/112 (17%), Positives = 41/112 (36%)
Query: 218 IDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLK-LSPESIQ 276
+ G L NL + P N L+G E+ A+I L L P ++
Sbjct: 910 LTGTPLQNNLEELFHLLNFLTPERFNN--LEGFLEEF-ADIAKEDQIKKLHDMLGPHMLR 966
Query: 277 SNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVAL 328
+D H+ + ++ + ++S + +L + + + V+L
Sbjct: 967 RLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFEALNTRGGGNQVSL 1018
Score = 42 (19.8 bits), Expect = 5.0e-29, Sum P(4) = 5.0e-29
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 539 GSSRTKDPCELA-KFDVVITTYSIVSME 565
G +K E A KF V++T+Y +++++
Sbjct: 841 GKKASKMKKEAAVKFHVLLTSYELITID 868
Score = 42 (19.8 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLL 792
+K +D+T + D+ S + QF A + V+ ++M+L
Sbjct: 153 MKDIDYTFTQEDYNSLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVL 198
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 236 (88.1 bits), Expect = 5.7e-29, Sum P(6) = 5.7e-29
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 1647 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1706
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1707 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1766
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+ K + + ++ + Q + D L LF
Sbjct: 1767 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 1799
Score = 128 (50.1 bits), Expect = 5.7e-29, Sum P(6) = 5.7e-29
Identities = 56/190 (29%), Positives = 83/190 (43%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1403 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1462
Query: 697 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 744
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 1463 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 1517
Query: 745 IMLKQVDFTDEERDFYSQLEINSR-----DQFKEYAAAG--TVKQNYV---NILLMLLRL 794
I + + Y SR D+ AA T K ++ L L
Sbjct: 1518 IQDYYCTLSPLQVQLYEDFA-KSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYL 1576
Query: 795 RQACDHPLLV 804
R+ C+HP LV
Sbjct: 1577 RKLCNHPALV 1586
Score = 93 (37.8 bits), Expect = 5.7e-29, Sum P(6) = 5.7e-29
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 345 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 404
G P P ++ KA ER L+ + G N E P + L ++Q+ ++W+
Sbjct: 1223 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYEIPVP---INAELRKYQQDGVNWL 1278
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ +I ++
Sbjct: 1279 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1306
Score = 74 (31.1 bits), Expect = 5.7e-29, Sum P(6) = 5.7e-29
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 563
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1330 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERVRLQHQVKRHNLIVASYDVVR 1388
Query: 564 MEV 566
++
Sbjct: 1389 NDI 1391
Score = 51 (23.0 bits), Expect = 2.7e-13, Sum P(4) = 2.7e-13
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 305
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 1505 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLK 1564
Query: 306 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 340
+ + + L R C NH AL V+T QH +
Sbjct: 1565 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 1594
Score = 46 (21.3 bits), Expect = 8.5e-13, Sum P(4) = 8.5e-13
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
+ E L +G + Q L K + AL+L + P F++ + K ++ +L + +
Sbjct: 1557 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTE-KLAVQNSSLHDIQHAP 1615
Query: 466 QVNGLDLVKQESDYCRVVPNGSSAKS 491
+++ L KQ C + NGS+++S
Sbjct: 1616 KLSAL---KQLLLDCGL-GNGSTSES 1637
Score = 44 (20.5 bits), Expect = 5.7e-29, Sum P(6) = 5.7e-29
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 190 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS 240
++ E+ ++++ A+ ++ ++R+P + NL S PY PS
Sbjct: 886 KKEENTLVQNYAAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTPS 936
Score = 39 (18.8 bits), Expect = 5.7e-29, Sum P(6) = 5.7e-29
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 4 YINTGDTIFGDPSSFNF 20
YI DTI DP++ +F
Sbjct: 656 YIAGADTIMEDPATRDF 672
Score = 39 (18.8 bits), Expect = 6.3e-29, Sum P(5) = 6.3e-29
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 243 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC-ILEDISQ- 300
N+K D D E E K R +A+ + I +++D K +D+ PD ++E+ ++
Sbjct: 231 NEKSNDST--DGEPEEKRRKIANVV-------INQSANDSKVLIDNIPDSSPLIEETNEW 281
Query: 301 PARS 304
P S
Sbjct: 282 PLES 285
Score = 37 (18.1 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 190 EEHEDLILESKRARFCQEICD 210
EE + LES FC+E+C+
Sbjct: 276 EETNEWPLES----FCEELCN 292
Score = 37 (18.1 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 861 FCNQCICERLTADDNQCPTRNCKIRLSL-SSVFSKATLNNSLS---QRQPGQE 909
+ QCI + L + P N KI +L SS+ L S++ Q GQE
Sbjct: 896 YAAQCIAKLLQQCTARTPCPNSKIVKNLCSSLCVDPYLTPSVTCPVPTQSGQE 948
Score = 37 (18.1 bits), Expect = 6.7e-12, Sum P(4) = 6.7e-12
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 773 EYAAAGTVKQNYVNILLMLLRLRQACDHPLL----VKGFDSNSLLRSSVEMAKKLPQERQ 828
E+A VK + + L L A PL + FD SLL A++L Q
Sbjct: 1028 EFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTININNFDGKSLLEKGDGPAQELVNSLQ 1087
Query: 829 MY 830
++
Sbjct: 1088 VF 1089
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 257 (95.5 bits), Expect = 5.7e-29, Sum P(5) = 5.7e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1026 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1083
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1084 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1143
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1144 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1203
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1204 SKQELDDI 1211
Score = 176 (67.0 bits), Expect = 5.7e-29, Sum P(5) = 5.7e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 847 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 907 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 958
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 959 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1013
Query: 800 HPLL 803
HP L
Sbjct: 1014 HPYL 1017
Score = 56 (24.8 bits), Expect = 5.7e-29, Sum P(5) = 5.7e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 722 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 758
Score = 45 (20.9 bits), Expect = 7.4e-28, Sum P(5) = 7.4e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 670 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 729
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 730 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 786
Score = 44 (20.5 bits), Expect = 5.7e-29, Sum P(5) = 5.7e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 827 ASRMKKEASV-KFHVLLTSYELITIDM 852
Score = 41 (19.5 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 990 LNARGGGNQVSLLNV----VMDLKKCC 1012
Score = 38 (18.4 bits), Expect = 4.0e-15, Sum P(4) = 4.0e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1018 FPVAAMEAPKMPNG 1031
Score = 38 (18.4 bits), Expect = 6.7e-07, Sum P(5) = 6.7e-07
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1667 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1725
Query: 1034 LD 1035
D
Sbjct: 1726 HD 1727
Score = 37 (18.1 bits), Expect = 5.7e-29, Sum P(5) = 5.7e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 516 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 544
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 257 (95.5 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1033 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1090
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1210
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1211 SKQELDDI 1218
Score = 176 (67.0 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 854 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 914 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 965
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 966 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1020
Query: 800 HPLL 803
HP L
Sbjct: 1021 HPYL 1024
Score = 56 (24.8 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 729 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 765
Score = 45 (20.9 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 677 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 736
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 737 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 793
Score = 44 (20.5 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 834 ASRMKKEASV-KFHVLLTSYELITIDM 859
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 997 LNARGGGNQVSLLNV----VMDLKKCC 1019
Score = 38 (18.4 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1025 FPVAAMEAPKMPNG 1038
Score = 38 (18.4 bits), Expect = 6.8e-07, Sum P(5) = 6.8e-07
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1674 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1732
Query: 1034 LD 1035
D
Sbjct: 1733 HD 1734
Score = 37 (18.1 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 523 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 551
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 257 (95.5 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1033 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1090
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1210
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1211 SKQELDDI 1218
Score = 176 (67.0 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 854 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 914 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 965
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 966 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1020
Query: 800 HPLL 803
HP L
Sbjct: 1021 HPYL 1024
Score = 56 (24.8 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 729 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 765
Score = 45 (20.9 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 677 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 736
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 737 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 793
Score = 44 (20.5 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 834 ASRMKKEASV-KFHVLLTSYELITIDM 859
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 997 LNARGGGNQVSLLNV----VMDLKKCC 1019
Score = 38 (18.4 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1025 FPVAAMEAPKMPNG 1038
Score = 38 (18.4 bits), Expect = 6.8e-07, Sum P(5) = 6.8e-07
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1674 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1732
Query: 1034 LD 1035
D
Sbjct: 1733 HD 1734
Score = 37 (18.1 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 523 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 551
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 257 (95.5 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1033 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1090
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1210
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1211 SKQELDDI 1218
Score = 176 (67.0 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 854 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 914 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 965
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 966 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1020
Query: 800 HPLL 803
HP L
Sbjct: 1021 HPYL 1024
Score = 56 (24.8 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 729 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 765
Score = 45 (20.9 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 677 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 736
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 737 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 793
Score = 44 (20.5 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 834 ASRMKKEASV-KFHVLLTSYELITIDM 859
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 997 LNARGGGNQVSLLNV----VMDLKKCC 1019
Score = 38 (18.4 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1025 FPVAAMEAPKMPNG 1038
Score = 38 (18.4 bits), Expect = 6.8e-07, Sum P(5) = 6.8e-07
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1674 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1732
Query: 1034 LD 1035
D
Sbjct: 1733 HD 1734
Score = 37 (18.1 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 523 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 551
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 209 (78.6 bits), Expect = 5.9e-29, Sum P(4) = 5.9e-29
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 759 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 817
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 818 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 877
Query: 1115 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1153
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 878 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 923
Score = 203 (76.5 bits), Expect = 5.9e-29, Sum P(4) = 5.9e-29
Identities = 55/185 (29%), Positives = 93/185 (50%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 554 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 613
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 614 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 665
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 666 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 721
Query: 808 DSNSL 812
+ L
Sbjct: 722 EEKIL 726
Score = 68 (29.0 bits), Expect = 5.9e-29, Sum P(4) = 5.9e-29
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 428 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 467
Score = 67 (28.6 bits), Expect = 7.4e-29, Sum P(4) = 7.4e-29
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 446 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 505
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 421 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 477
Query: 506 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 550
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 478 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 533
Query: 551 --KFDVVITTYSIVSMEVPK 568
KFD +ITT+ ++ + P+
Sbjct: 534 AYKFDALITTFEMILSDCPE 553
Score = 49 (22.3 bits), Expect = 5.9e-29, Sum P(4) = 5.9e-29
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 239 PSTLNKKELDGVKEDMEAEIKTRSMAS 265
P LN+ EL V+ + E E K R +S
Sbjct: 98 PRVLNEDELPSVRPEEEGEKKRRKKSS 124
Score = 41 (19.5 bits), Expect = 6.2e-12, Sum P(4) = 6.2e-12
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1081 LDLWWNPTTEDQAIDRA---HRIGQT 1103
L WW P D + R H + QT
Sbjct: 1537 LPKWWEPVRHDGELLRGAARHGVSQT 1562
Score = 40 (19.1 bits), Expect = 7.8e-12, Sum P(4) = 7.8e-12
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 873 DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQE--IPTDYSDSKLVEAPS 924
DD+ K+ S SS S ++ ++S + + +E + D S SKL + S
Sbjct: 1684 DDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKLYDEES 1737
Score = 37 (18.1 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 710 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 741
KG KL + + +R + T D + +P
Sbjct: 145 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 176
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 257 (95.5 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1026 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1083
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1084 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1143
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1144 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1203
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1204 SKQELDDI 1211
Score = 176 (67.0 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 847 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 907 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 958
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 959 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1013
Query: 800 HPLL 803
HP L
Sbjct: 1014 HPYL 1017
Score = 56 (24.8 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 722 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 758
Score = 45 (20.9 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 670 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 729
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 730 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 786
Score = 44 (20.5 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 827 ASRMKKEASV-KFHVLLTSYELITIDM 852
Score = 43 (20.2 bits), Expect = 2.3e-07, Sum P(5) = 2.3e-07
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T ++SDE +K +K + +I GG + S W + K I +RR
Sbjct: 1677 LQNGETPKDLSDEKQKKNSKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1735
Query: 1034 LD 1035
D
Sbjct: 1736 HD 1737
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 990 LNARGGGNQVSLLNV----VMDLKKCC 1012
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 895 ATLNNSLSQRQPGQEIPTDYSDSKLVEAP 923
A LNNSL P E D D E P
Sbjct: 22 ALLNNSLPPPHPENEEDPD-EDLSEAETP 49
Score = 38 (18.4 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1018 FPVAAMEAPKMPNG 1031
Score = 37 (18.1 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 516 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 544
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 257 (95.5 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1026 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1083
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1084 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1143
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1144 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1203
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1204 SKQELDDI 1211
Score = 176 (67.0 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 847 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 907 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 958
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 959 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1013
Query: 800 HPLL 803
HP L
Sbjct: 1014 HPYL 1017
Score = 56 (24.8 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 722 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 758
Score = 45 (20.9 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 670 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 729
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 730 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 786
Score = 44 (20.5 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 827 ASRMKKEASV-KFHVLLTSYELITIDM 852
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 990 LNARGGGNQVSLLNV----VMDLKKCC 1012
Score = 41 (19.5 bits), Expect = 3.6e-07, Sum P(5) = 3.6e-07
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T ++SDE +K K + +I GG + S W + K I +RR
Sbjct: 1677 LQNGETPKDLSDEKQKKNLKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1735
Query: 1034 LD 1035
D
Sbjct: 1736 HD 1737
Score = 38 (18.4 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1018 FPVAAMEAPKMPNG 1031
Score = 37 (18.1 bits), Expect = 5.9e-29, Sum P(5) = 5.9e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 516 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 544
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 257 (95.5 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1053 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1110
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1111 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1170
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1171 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1230
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1231 SKQELDDI 1238
Score = 176 (67.0 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 874 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 933
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 934 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 985
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 986 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1040
Query: 800 HPLL 803
HP L
Sbjct: 1041 HPYL 1044
Score = 56 (24.8 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 749 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 785
Score = 45 (20.9 bits), Expect = 8.1e-28, Sum P(5) = 8.1e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 697 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 756
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 757 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 813
Score = 44 (20.5 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 854 ASRMKKEASV-KFHVLLTSYELITIDM 879
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 1017 LNARGGGNQVSLLNV----VMDLKKCC 1039
Score = 38 (18.4 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1045 FPVAAMEAPKMPNG 1058
Score = 38 (18.4 bits), Expect = 7.2e-07, Sum P(5) = 7.2e-07
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1694 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1752
Query: 1034 LD 1035
D
Sbjct: 1753 HD 1754
Score = 37 (18.1 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 543 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 571
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 257 (95.5 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1055 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1112
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1113 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1172
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1173 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1232
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1233 SKQELDDI 1240
Score = 176 (67.0 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 876 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 935
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 936 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 987
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 988 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1042
Query: 800 HPLL 803
HP L
Sbjct: 1043 HPYL 1046
Score = 56 (24.8 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 751 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 787
Score = 45 (20.9 bits), Expect = 8.1e-28, Sum P(5) = 8.1e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 699 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 758
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 759 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 815
Score = 44 (20.5 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 856 ASRMKKEASV-KFHVLLTSYELITIDM 881
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 1019 LNARGGGNQVSLLNV----VMDLKKCC 1041
Score = 38 (18.4 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1047 FPVAAMEAPKMPNG 1060
Score = 38 (18.4 bits), Expect = 7.2e-07, Sum P(5) = 7.2e-07
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T +++DE +K K + +I GG + S W + K I +RR
Sbjct: 1696 LQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1754
Query: 1034 LD 1035
D
Sbjct: 1755 HD 1756
Score = 37 (18.1 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 545 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 573
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 243 (90.6 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 59/186 (31%), Positives = 98/186 (52%)
Query: 973 NDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYR 1032
N + G +L + + + + + ++ G + ++FSQ TKMLDLLE L+ +Y
Sbjct: 394 NGSYDGSSL--VKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYE 451
Query: 1033 RLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTED 1091
R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP +
Sbjct: 452 RIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDI 511
Query: 1092 QAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF----GEDETGGQQTR 1147
QA RAHRIGQ + V + R + +VE+RI Q KR+M+ + G G T+
Sbjct: 512 QAFSRAHRIGQNKKVMIYRFVTRASVEERIT--QVAKRKMMLTHLVVRPGLGSKSGSMTK 569
Query: 1148 LTVDDL 1153
+DD+
Sbjct: 570 QELDDI 575
Score = 169 (64.5 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 51/184 (27%), Positives = 93/184 (50%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R + + L+GTP+QN +++L+
Sbjct: 211 LITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELF 270
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 271 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 322
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 323 MPAKTELIVRVELSQMQKKYYKF--ILTRN-FEALNSKGG--GNQVSLLNIMMDLKKCCN 377
Query: 800 HPLL 803
HP L
Sbjct: 378 HPYL 381
Score = 60 (26.2 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKT+ TI +
Sbjct: 105 ILADEMGLGKTVQTIVFL 122
Score = 47 (21.6 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 21/112 (18%), Positives = 42/112 (37%)
Query: 218 IDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKL-SPESIQ 276
+ G L NL + P N L+G E+ A+I L L P ++
Sbjct: 257 LTGTPLQNNLEELFHLLNFLTPERFNN--LEGFLEEF-ADISKEDQIKKLHDLLGPHMLR 313
Query: 277 SNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVAL 328
+D ++ + ++ + ++SQ + +L + S + V+L
Sbjct: 314 RLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSL 365
Score = 40 (19.1 bits), Expect = 6.2e-29, Sum P(4) = 6.2e-29
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 542 RTKDPCELAKFDVVITTYSIVSME 565
R K ++ KF V++T+Y +++++
Sbjct: 193 RMKKEVQI-KFHVLLTSYELITID 215
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 236 (88.1 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1705
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+ K + + ++ + Q + D L LF
Sbjct: 1766 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 1798
Score = 131 (51.2 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 51/189 (26%), Positives = 84/189 (44%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1402 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1461
Query: 697 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 744
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 1462 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 1516
Query: 745 IMLKQVDFTDEERDFYSQL-EINSRDQFKEYAAAGTVKQNYV--------NILLMLLRLR 795
I + + Y + ++ E ++ T+ + ++ L LR
Sbjct: 1517 IQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLR 1576
Query: 796 QACDHPLLV 804
+ C+HP LV
Sbjct: 1577 KLCNHPALV 1585
Score = 91 (37.1 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 345 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 404
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1222 GIPDPPNMSAELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1277
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ +I ++
Sbjct: 1278 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1305
Score = 73 (30.8 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 563
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1329 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 1387
Query: 564 MEV 566
++
Sbjct: 1388 NDI 1390
Score = 51 (23.0 bits), Expect = 6.8e-13, Sum P(4) = 6.8e-13
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 305
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 1504 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLK 1563
Query: 306 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 340
+ + + L R C NH AL V+T QH +
Sbjct: 1564 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 1593
Score = 49 (22.3 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
+ E L +G + Q L K + AL+L + P F+T + K ++ +L + +
Sbjct: 1556 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAE-KLAVQNSSLHDIQHAP 1614
Query: 466 QVNGLDLVKQESDYCRVVPNGSSAKS 491
+++ L KQ C + NGS+++S
Sbjct: 1615 KLSAL---KQLLLDCGL-GNGSTSES 1636
Score = 40 (19.1 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 190 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQP 239
++ E+ ++++ A+ ++ ++R+P + NL S PY P
Sbjct: 886 KKEENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 39 (18.8 bits), Expect = 6.2e-29, Sum P(5) = 6.2e-29
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 243 NKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDIC-ILEDISQ- 300
N+K D D E E K R +A+ + I +++D K +D+ PD ++E+ ++
Sbjct: 231 NEKSNDST--DGEPEEKRRKIANVV-------INQSANDSKVLIDNIPDSSSLIEETNEW 281
Query: 301 PARS 304
P S
Sbjct: 282 PLES 285
Score = 39 (18.8 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 4 YINTGDTIFGDPSSFNF 20
YI DTI DP++ +F
Sbjct: 656 YIAGADTIMEDPATRDF 672
Score = 37 (18.1 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 190 EEHEDLILESKRARFCQEICD 210
EE + LES FC+E+C+
Sbjct: 276 EETNEWPLES----FCEELCN 292
Score = 37 (18.1 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 861 FCNQCICERLTADDNQCPTRNCKIRLSLSS 890
+ QCI + L + P N KI +L S
Sbjct: 896 YAAQCIAKLLQQCTTRTPCPNSKIIKNLCS 925
Score = 37 (18.1 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 773 EYAAAGTVKQNYVNILLMLLRLRQACDHPLL----VKGFDSNSLLRSSVEMAKKLPQERQ 828
E+A VK + + L L A PL + FD SLL A++L Q
Sbjct: 1028 EFALTTIVKHFGGEMAVKLPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQELVNSLQ 1087
Query: 829 MY 830
++
Sbjct: 1088 VF 1089
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 257 (95.5 bits), Expect = 6.4e-29, Sum P(5) = 6.4e-29
Identities = 60/188 (31%), Positives = 99/188 (52%)
Query: 969 PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS 1028
P N ++ G L I + + + + ++K GG + ++FSQ TKMLDLLE L+
Sbjct: 1054 PKMPNGMYDGSAL--IRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG 1111
Query: 1029 IQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1087
+Y R+DG ++ R +A+ FN + ++S +A LG+N+ A V++ D WNP
Sbjct: 1112 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1171
Query: 1088 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF--GEDETGGQQ 1145
+ QA RAHRIGQ + V + R + +VE+RI + +KK + G G
Sbjct: 1172 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSM 1231
Query: 1146 TRLTVDDL 1153
++ +DD+
Sbjct: 1232 SKQELDDI 1239
Score = 176 (67.0 bits), Expect = 6.4e-29, Sum P(5) = 6.4e-29
Identities = 51/184 (27%), Positives = 94/184 (51%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +++DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 875 LITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 934
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F I+K KKL +L MLRR K + N
Sbjct: 935 HLLNFLTPERFHNLEGFLEEF-ADIAKEDQ--IKKLHDMLGPHMLRRLKADVFK-----N 986
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ A G N V++L +++ L++ C+
Sbjct: 987 MPSKTELIVRVELSPMQKKYYKY--ILTRN-FEALNARGG--GNQVSLLNVVMDLKKCCN 1041
Query: 800 HPLL 803
HP L
Sbjct: 1042 HPYL 1045
Score = 56 (24.8 bits), Expect = 6.4e-29, Sum P(5) = 6.4e-29
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+Q L+W+ S + ILAD+ GLGKT+ T +
Sbjct: 750 YQMEGLNWL---RFSWAQGTDTILADEMGLGKTVQTAVFL 786
Score = 45 (20.9 bits), Expect = 8.4e-28, Sum P(5) = 8.4e-28
Identities = 28/117 (23%), Positives = 49/117 (41%)
Query: 418 ILADDQGL-GKTISTIALILKERPPSFRTEDDN---KRQLETLNLDEED-NGIQVNGLDL 472
++ ++G GK + + L ERPP T D +RQ E L+ + Q+ GL+
Sbjct: 698 LMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNW 757
Query: 473 VK----QESDYCRV--VPNGSSAKSFNFVEQA--KGRPAAGTLVVCPTSVLRQWAEE 521
++ Q +D + G + ++ F+ +G LV P S + W E
Sbjct: 758 LRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWERE 814
Score = 44 (20.5 bits), Expect = 6.4e-29, Sum P(5) = 6.4e-29
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 540 SSRTKDPCELAKFDVVITTYSIVSMEV 566
+SR K + KF V++T+Y ++++++
Sbjct: 855 ASRMKKEASV-KFHVLLTSYELITIDM 880
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 LNAQGGPGKGSMLKVPAIDYLDAKRQC 79
LNA+GG + S+L V +D K+ C
Sbjct: 1018 LNARGGGNQVSLLNV----VMDLKKCC 1040
Score = 41 (19.5 bits), Expect = 3.9e-07, Sum P(5) = 3.9e-07
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 975 LHGGDTLDNISDENEKIAAKCS-IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRR 1033
L G+T ++SDE +K K + +I GG + S W + K I +RR
Sbjct: 1711 LQNGETPKDLSDEKQKKNLKQRFMFNIADGGFTEL-HSLWQNEERAATVTKKTYEIWHRR 1769
Query: 1034 LD 1035
D
Sbjct: 1770 HD 1771
Score = 38 (18.4 bits), Expect = 4.4e-15, Sum P(4) = 4.4e-15
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 559 YSIVSMEVPKQPLG 572
+ + +ME PK P G
Sbjct: 1046 FPVAAMEAPKMPNG 1059
Score = 37 (18.1 bits), Expect = 6.4e-29, Sum P(5) = 6.4e-29
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 235 PYAQPSTLNKKELDGVKEDMEAEIKTRSMA 264
P A P+T + K L+G + + + +K + M+
Sbjct: 544 PDADPNTPSPKPLEG-RPERQFFVKWQGMS 572
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 209 (78.6 bits), Expect = 6.6e-29, Sum P(5) = 6.6e-29
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1142 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1200
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1201 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1260
Query: 1115 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1153
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1261 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1306
Score = 209 (78.6 bits), Expect = 6.6e-29, Sum P(5) = 6.6e-29
Identities = 58/199 (29%), Positives = 99/199 (49%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 937 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 996
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 997 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1048
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 1049 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 1104
Query: 808 DSNSLLRSSVEMAKKLPQE 826
+ L+ E +PQ+
Sbjct: 1105 EEKILMEFR-EACHIIPQD 1122
Score = 68 (29.0 bits), Expect = 6.6e-29, Sum P(5) = 6.6e-29
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 850
Score = 67 (28.6 bits), Expect = 8.3e-29, Sum P(5) = 8.3e-29
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 446 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 505
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 804 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 860
Query: 506 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 550
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 861 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 916
Query: 551 --KFDVVITTYSIVSMEVPK 568
KFD +ITT+ ++ + P+
Sbjct: 917 AYKFDALITTFEMILSDCPE 936
Score = 49 (22.3 bits), Expect = 6.6e-29, Sum P(5) = 6.6e-29
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 239 PSTLNKKELDGVKEDMEAEIKTRSMAS 265
P LN+ EL V+ + E E K R +S
Sbjct: 481 PRVLNEDELPSVRPEEEGEKKRRKKSS 507
Score = 44 (20.5 bits), Expect = 6.6e-29, Sum P(5) = 6.6e-29
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 122 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLS 176
+F D DD F + V+ +PI+EA+G SS D + +D G +G S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGSGDVGNS 61
Score = 43 (20.2 bits), Expect = 2.4e-12, Sum P(5) = 2.4e-12
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1073 VAACHVLLLDL--WWNPTTEDQAIDRA---HRIGQT 1103
+A C L+L WW P D + R H + QT
Sbjct: 1910 LALCQPPGLELPKWWEPVRHDGELLRGAARHGVSQT 1945
Score = 41 (19.5 bits), Expect = 9.3e-10, Sum P(3) = 9.3e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 701 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 227 KVPGNQAAVQRIVQPSRPVKQLVLQPVKGSAPAGNPGATGPP 268
Score = 37 (18.1 bits), Expect = 1.7e-09, Sum P(4) = 1.7e-09
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 710 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 741
KG KL + + +R + T D + +P
Sbjct: 528 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 559
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 226 (84.6 bits), Expect = 8.4e-29, Sum P(5) = 8.4e-29
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 969 PGDSNDLHGGDT--LDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1026
P + N+ G L I + I + ++ G + ++FSQ +MLD+L L
Sbjct: 739 PPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTI 798
Query: 1027 SSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1085
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D W
Sbjct: 799 KHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW 858
Query: 1086 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132
NP + QA RAHRIGQ + V++ RL K TVE+ I+ ++ K++MV
Sbjct: 859 NPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII--ERAKKKMV 903
Score = 167 (63.8 bits), Expect = 8.4e-29, Sum P(5) = 8.4e-29
Identities = 49/183 (26%), Positives = 94/183 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 575 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMP 634
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+ F ++ F + K GY+ L VL+ +LRR K D E +LP KV +
Sbjct: 635 EKFEFWEDF----EEDHGKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 685
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+V+ + ++ +Y I +R+ +K A GT + + L +++ L++ C+H L+K
Sbjct: 686 LRVEMSALQKQYYKW--ILTRN-YKALAK-GT-RGSTSGFLNIVMELKKCCNHCYLIKPP 740
Query: 808 DSN 810
+ N
Sbjct: 741 EEN 743
Score = 86 (35.3 bits), Expect = 8.4e-29, Sum P(5) = 8.4e-29
Identities = 50/200 (25%), Positives = 88/200 (44%)
Query: 241 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQ--SNSSDCKSHVDDEPDICILEDI 298
+L ++++ G+K+ + K + L K+SPE ++ + + S ++ + I + +I
Sbjct: 310 SLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQI-VEREI 368
Query: 299 S---QPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLG 355
+ +PA SN+ L K + + S CS AL S S+ +P
Sbjct: 369 AHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECK 428
Query: 356 GMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCS 415
+K + R VA++ QP G + L +Q L+W+ S +
Sbjct: 429 ALKQRP---RF---VALK--KQPTYL-----GGENLELRDYQLEGLNWLAHSWCKS---N 472
Query: 416 GGILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI+ +
Sbjct: 473 SVILADEMGLGKTIQTISFL 492
Score = 51 (23.0 bits), Expect = 8.4e-29, Sum P(5) = 8.4e-29
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC----------ELAKFDVVI 556
L+V P S L W E ++ + ++V+VY G +++ + KF+ +I
Sbjct: 506 LIVVPLSTLTSWQREF--EIWAP-EINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 562
Query: 557 TTYSIV 562
TTY I+
Sbjct: 563 TTYEIL 568
Score = 39 (18.8 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 634 FRVVLDEAQSIKNHRTQVARACWGLRAKRRW 664
F+ +D S N +T R C L+ + R+
Sbjct: 406 FQSCIDSFHSRNNSKTIPTRECKALKQRPRF 436
Score = 37 (18.1 bits), Expect = 8.4e-29, Sum P(5) = 8.4e-29
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 14 DPSSFNFQHLLSSEETATKPK 34
+PS FN + SS + PK
Sbjct: 102 EPSRFNIKEEASSGSESGSPK 122
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 205 (77.2 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1300 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSR-PDS 1358
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL +
Sbjct: 1359 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1418
Query: 1115 NTVE----DRI-LALQQKKREMVASAFGEDETGGQQ--TRLTVDDL 1153
N+ E D+ L L K + + + E+ T G Q ++ ++DL
Sbjct: 1419 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1464
Score = 201 (75.8 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1095 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1154
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1155 GRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1206
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1207 IEVELTNIQKKYYRAILEKN----FA-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1261
Query: 807 FDSNSL 812
+ L
Sbjct: 1262 AEEKIL 1267
Score = 76 (31.8 bits), Expect = 8.6e-29, Sum P(3) = 8.6e-29
Identities = 40/152 (26%), Positives = 63/152 (41%)
Query: 438 ERPPSFR-TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN---GSSAKSFN 493
ERPP+ + ++ R+ + N E VN L + C + G + +S
Sbjct: 947 ERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSIT 1006
Query: 494 FVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS---RT------ 543
F+ + + G LV+ P S + W E R L+V+VYHGS RT
Sbjct: 1007 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASRRTIQLYEM 1062
Query: 544 --KDPCELA-----KFDVVITTYSIVSMEVPK 568
KDP KF +ITT+ ++ + P+
Sbjct: 1063 YFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1094
Score = 66 (28.3 bits), Expect = 9.3e-28, Sum P(3) = 9.3e-28
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ ++ +C ILAD+ GLGKTI +I +
Sbjct: 969 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 1008
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 971 DSNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1002
+ D+ DT + E E + KC + I++
Sbjct: 2194 EETDIADKDTKQDCDAEAETGSVKCELKDIEM 2225
Score = 37 (18.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 806 GFDSNSLLRSSVEMAKK 822
G DS +L R+SV+ +++
Sbjct: 628 GLDSQNLSRNSVDCSQE 644
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 221 (82.9 bits), Expect = 8.8e-29, Sum P(4) = 8.8e-29
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PE 1055
+ ++ K ++F Q T ++ ++E +Y RLDGT R +K FN E
Sbjct: 422 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSE 481
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
+ ++S +A LGLN+ +A V++ D WNP + QA DRAHRIGQ V VLRL N
Sbjct: 482 YFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN 541
Query: 1116 TVEDRILALQQKK 1128
+VE++ILA + K
Sbjct: 542 SVEEKILAAAKYK 554
Score = 137 (53.3 bits), Expect = 8.8e-29, Sum P(4) = 8.8e-29
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 628 LAKVGWFRVVLDEAQSIKNHR---TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRF 684
LAK+ W +++DE +KNH TQV + A RR L+GTP+QN + +L++ F
Sbjct: 203 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV--APRRLLLTGTPLQNKLPELWALLNF 260
Query: 685 LRYDPFAVYKSFCSMIKVPISKNPVKG----------YKKLQAVLKTIMLRRTKGTLLDG 734
L F +F P + K ++L VL+ +LRR K
Sbjct: 261 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKK----- 315
Query: 735 EPIINLPPKVIMLKQVDFTDEERDFYSQLEINS---RD-QFKEYAAAGTVKQNYVNILLM 790
E LP KV + + D + +R Y ++ D K+ G K ++
Sbjct: 316 EVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK----TLMNT 371
Query: 791 LLRLRQACDHPLLVKGFDSN 810
+++LR+ C+HP + + + +
Sbjct: 372 IMQLRKICNHPYMFQHIEES 391
Score = 92 (37.4 bits), Expect = 8.8e-29, Sum P(4) = 8.8e-29
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L ++Q L W+V ++L+ GILAD+ GLGKTI TIALI
Sbjct: 87 LKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 126
Score = 60 (26.2 bits), Expect = 8.8e-29, Sum P(4) = 8.8e-29
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELAKFDVVITTYSIV 562
L++ P S L WA E S +S + R P KF+V++TTY +
Sbjct: 140 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 196
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 207 (77.9 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 50/150 (33%), Positives = 80/150 (53%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G + ++FSQ T+MLD+L+ L Y R+DG++ R A+K+F P + +S
Sbjct: 365 GHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQPIFT--FLST 422
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
+A +G+N+ AA V+ D +NP + QA RAHRIGQ + V V+RL ++TVE+ +
Sbjct: 423 RAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYR 482
Query: 1124 LQQKKREMVASAF--GEDETGGQQTRLTVD 1151
K ++ + G G Q+ D
Sbjct: 483 KAASKLQLTNTIIEGGHFTLGAQKPAADAD 512
Score = 135 (52.6 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 633 WFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692
W +V+DEA +KN + + + L+GTPIQN++ +LYS F+ D F+
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 693 --YKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQV 750
+ F + I K + +L +L+ +LRR K E LP K ++
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKA-----EVATELPRKTEVVIYH 282
Query: 751 DFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD 808
+ ++ +Y + + D F+ A QN +L +LR+ DHP L G +
Sbjct: 283 GMSALQKKYYKAILMKDLDAFENEMAKKVKLQN------VLSQLRKCVDHPYLFDGVE 334
Score = 88 (36.0 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 370 VAMQGISQ---PNAEASAPD----GVLAVPLLRHQRIALSWMVQKETSSLHCSGG-ILAD 421
+A+Q S+ P A D G+ + L +Q ++W+ Q HC G IL D
Sbjct: 18 LALQSKSRAEAPRARVQEQDLRQWGLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGD 73
Query: 422 DQGLGKTISTIALIL 436
+ GLGKT TIAL +
Sbjct: 74 EMGLGKTCQTIALFI 88
Score = 78 (32.5 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC---EL---AKFDVVITTYS 560
L++CP SVL W EE+ + G LS + Y G + K C +L ++F V++TTY
Sbjct: 101 LILCPLSVLSNWKEEMER--FAPG-LSCVTYAGD-KDKRACLQQDLKQESRFHVLLTTYE 156
Query: 561 I 561
I
Sbjct: 157 I 157
Score = 49 (22.3 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 25/107 (23%), Positives = 45/107 (42%)
Query: 171 SFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGS 230
SF+ P L S+ QV + ++D+ ES+ A ++ R ++ L
Sbjct: 220 SFV--EPDLFSKEQVEDFVQRYQDIEKESESASELYKLLQPFLLRRV--KAEVATELPRK 275
Query: 231 RQYFPYAQPSTLNKK--------ELDGVKEDMEAEIKTRSMASHLLK 269
+ Y S L KK +LD + +M ++K +++ S L K
Sbjct: 276 TEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKLQNVLSQLRK 322
Score = 39 (18.8 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 254 MEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKT 313
++ ++K S H+L + E ++S KS P ++ D + + NQS +L KT
Sbjct: 138 LQQDLKQESRF-HVLLTTYEICLKDASFLKSF----PWSVLVVDEAHRLK-NQSSLLHKT 191
Query: 314 LSMNRSACSNHSVALGKPVVTSQHSSYS 341
LS S + G P+ S YS
Sbjct: 192 LSEFSVVFS--LLLTGTPIQNSLQELYS 217
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 209 (78.6 bits), Expect = 1.1e-28, Sum P(5) = 1.1e-28
Identities = 55/166 (33%), Positives = 86/166 (51%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG K ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1144 LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK-PDS 1202
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V V RL +
Sbjct: 1203 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR 1262
Query: 1115 NTVEDRILALQQKK----REMVASAFGEDE--TGGQQ-TRLTVDDL 1153
N+ E + K + ++ S G D TG QQ ++ ++DL
Sbjct: 1263 NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDL 1308
Score = 209 (78.6 bits), Expect = 1.1e-28, Sum P(5) = 1.1e-28
Identities = 58/199 (29%), Positives = 99/199 (49%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L ++ W V++DEA +KN ++ + + + + L+GTP+QN +++L+S FL
Sbjct: 939 LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 998
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 999 SQFPSESEFLKDFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKQETI 1050
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+V+ T+ ++ +Y + + F A T N N+L ++ LR+ C+HP L+ G
Sbjct: 1051 IEVELTNIQKKYYRAI-LEKNFSFLSKGAGHT---NMPNLLNTMMELRKCCNHPYLINGA 1106
Query: 808 DSNSLLRSSVEMAKKLPQE 826
+ L+ E +PQ+
Sbjct: 1107 EEKILMEFR-EACHIIPQD 1124
Score = 68 (29.0 bits), Expect = 1.1e-28, Sum P(5) = 1.1e-28
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +IA +
Sbjct: 813 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFL 852
Score = 67 (28.6 bits), Expect = 1.3e-28, Sum P(5) = 1.3e-28
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 446 EDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAG 505
E N+ QL L E N + N + +Q + G + +S F+++ G
Sbjct: 806 EYKNRNQLREYQL-EGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHG 862
Query: 506 T-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-------CELA------- 550
LV+ P S + W E N T ++ +VYHGS ++ C+ +
Sbjct: 863 PFLVIAPLSTITNWEREF-NTWTE---MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPG 918
Query: 551 --KFDVVITTYSIVSMEVPK 568
KFD +ITT+ ++ + P+
Sbjct: 919 AYKFDALITTFEMILSDCPE 938
Score = 49 (22.3 bits), Expect = 1.1e-28, Sum P(5) = 1.1e-28
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 239 PSTLNKKELDGVKEDMEAEIKTRSMAS 265
P LN+ EL V+ + E E K R +S
Sbjct: 483 PRVLNEDELPSVRPEEEGEKKRRKKSS 509
Score = 43 (20.2 bits), Expect = 3.8e-12, Sum P(5) = 3.8e-12
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 1073 VAACHVLLLDL--WWNPTTEDQAIDRA---HRIGQT 1103
+A C L+L WW P D + R H + QT
Sbjct: 1912 LALCQPPGLELPKWWEPVRHDGELLRGAARHGVSQT 1947
Score = 42 (19.8 bits), Expect = 1.1e-28, Sum P(5) = 1.1e-28
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 122 VFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLS 176
+F D DD F + V+ +PI+EA+G SS D + +D G +G S
Sbjct: 14 LFGLDSLTDDSF---NQVTQ--DPIEEALGLPSSL-DSLDQMN-QDGGGGDVGNS 61
Score = 39 (18.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 701 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
KVP ++ V+ + +K ++L+ KG+ G P PP
Sbjct: 227 KVPGNQAAVQRIVQPSRPVKQLVLQPVKGSAPAGNPGAAGPP 268
Score = 37 (18.1 bits), Expect = 2.7e-09, Sum P(4) = 2.7e-09
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 710 KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLP 741
KG KL + + +R + T D + +P
Sbjct: 530 KGKSKLNTITPVVGKKRKRNTSSDNSDVEVMP 561
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 238 (88.8 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1028 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1087
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1088 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1147
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1148 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1184
Score = 184 (69.8 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 820 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 879
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 880 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 931
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 932 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 986
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 987 HPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLL 1021
Score = 61 (26.5 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 714 ILADEMGLGKTIQTIVFL 731
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1786 KVLNQLEELLSDMKADVTRLPATLS 1810
Score = 39 (18.8 bits), Expect = 1.3e-28, Sum P(4) = 1.3e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 810 KFHVLLTSYELITID 824
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 236 (88.1 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 54/155 (34%), Positives = 86/155 (55%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1705
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ R V+V RL + T+E++I+
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+ K + + ++ + Q + D L LF
Sbjct: 1766 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 1798
Score = 128 (50.1 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 56/190 (29%), Positives = 83/190 (43%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1402 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1461
Query: 697 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 744
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 1462 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 1516
Query: 745 IMLKQVDFTDEERDFYSQLEINSR-----DQFKEYAAAG--TVKQNYV---NILLMLLRL 794
I + + Y SR D+ AA T K ++ L L
Sbjct: 1517 IQDYYCTLSPLQVQLYEDFA-KSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYL 1575
Query: 795 RQACDHPLLV 804
R+ C+HP LV
Sbjct: 1576 RKLCNHPALV 1585
Score = 89 (36.4 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 345 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 404
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1222 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1277
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ +I ++
Sbjct: 1278 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1305
Score = 76 (31.8 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 563
+LVVCP ++ W +E+ K SK L+ L Y G + R + ++ + ++++ +Y +V
Sbjct: 1329 SLVVCPPTLTGHWVDEV-GKFCSKEYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 1387
Query: 564 MEV 566
++
Sbjct: 1388 NDI 1390
Score = 51 (23.0 bits), Expect = 4.6e-13, Sum P(4) = 4.6e-13
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 305
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 1504 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLK 1563
Query: 306 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSY 340
+ + + L R C NH AL V+T QH +
Sbjct: 1564 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEF 1593
Score = 46 (21.3 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
+ E L +G + Q L K + AL+L + P F++ + K ++ +L + +
Sbjct: 1556 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTE-KLAVQNSSLHDIQHAP 1614
Query: 466 QVNGLDLVKQESDYCRVVPNGSSAKS 491
+++ L KQ C + NGS+++S
Sbjct: 1615 KLSAL---KQLLLDCGL-GNGSTSES 1636
Score = 42 (19.8 bits), Expect = 1.6e-28, Sum P(6) = 1.6e-28
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 4 YINTGDTIFGDPSSFNF 20
YI DTI DPS+ +F
Sbjct: 656 YIAGADTIMEDPSTRDF 672
Score = 39 (18.8 bits), Expect = 1.6e-28, Sum P(6) = 1.6e-28
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 190 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQP 239
+ E+ ++++ A+ ++ ++R+P + NL S PY P
Sbjct: 886 KREENTLVQNYAAQCIAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTP 935
Score = 38 (18.4 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 148 EAVGRNSSYHDGCNSFPFKDSGQ-SFIGLSPSLLSQNQVVHAKEEHEDLILESKR---AR 203
+AV N +D + P + + + + ++ S ++ E LI E+
Sbjct: 226 DAVETNEKSNDSTDGEPEEKRRKIANVVINQSANDSKVLIDNVPESSSLIEETNEWPLES 285
Query: 204 FCQEICD 210
FC+E+C+
Sbjct: 286 FCEELCN 292
Score = 37 (18.1 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 861 FCNQCICERLTADDNQCPTRNCKIRLSLSS 890
+ QCI + L + P N KI +L S
Sbjct: 896 YAAQCIAKLLQQCTTRTPCPNSKIIKNLCS 925
Score = 37 (18.1 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 773 EYAAAGTVKQNYVNILLMLLRLRQACDHPLL----VKGFDSNSLLRSSVEMAKKLPQERQ 828
E+A VK + + L L A PL + FD SLL A++L Q
Sbjct: 1028 EFALTTIVKHFGGEMAVKLPHLWDAMVGPLKNTIDINNFDGKSLLEKGDGPAQELVNSLQ 1087
Query: 829 MY 830
++
Sbjct: 1088 VF 1089
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 229 (85.7 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 57/168 (33%), Positives = 96/168 (57%)
Query: 969 PGDSNDLHGG-DTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1025
P D+N+ + + L ++ + K+ K I ++ G + ++FSQ +MLD+L LK
Sbjct: 767 PPDNNEFYNKQEALQHLIRSSGKLILLDKLLI-RLRERGNRVLIFSQMVRMLDILAEYLK 825
Query: 1026 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D
Sbjct: 826 YRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 885
Query: 1085 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132
WNP + QA RAHRIGQ + V++ RL K +VE+ IL ++ K++MV
Sbjct: 886 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL--ERAKKKMV 931
Score = 163 (62.4 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 47/208 (22%), Positives = 98/208 (47%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 603 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 662
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+ F+ ++ F + K GY L L+ +LRR K D E +LP KV +
Sbjct: 663 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVKK---DVEK--SLPAKVEQI 713
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+++ + ++ +Y + + + + T ++NI++ L++ C+H L+K
Sbjct: 714 LRMEMSALQKQYYKWILTRNYKALSKGSKGST--SGFLNIMM---ELKKCCNHCYLIKPP 768
Query: 808 DSNSLLRSSVEMAKKLPQERQMYLLNCL 835
D+N + + ++ LL+ L
Sbjct: 769 DNNEFYNKQEALQHLIRSSGKLILLDKL 796
Score = 71 (30.1 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 52/203 (25%), Positives = 79/203 (38%)
Query: 241 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 298
TL ++ + G+K+ + K + L SPE ++ + C+ + D+ I+E I
Sbjct: 337 TLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYN--CQQELTDDLHKQYQIVERI 394
Query: 299 SQPARSNQSLVLG------KTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 352
A SNQ G K + S CS AL + Y P
Sbjct: 395 I--AHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFK 452
Query: 353 GLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSL 412
+K + R VA++ QP S G + L +Q L+W+
Sbjct: 453 DCKVLKQRP---RF---VALK--KQP----SYIGGHEGLELRDYQLNGLNWLAHSWCKGN 500
Query: 413 HCSGGILADDQGLGKTISTIALI 435
C ILAD+ GLGKTI TI+ +
Sbjct: 501 SC---ILADEMGLGKTIQTISFL 520
Score = 60 (26.2 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSR--------TKDPCELAKFDVVI 556
L+V P S L W E++ T ++ +VY G +SR T + KF++++
Sbjct: 534 LLVVPLSTLTSWQREIQ---TWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILL 590
Query: 557 TTYSIV 562
TTY I+
Sbjct: 591 TTYEIL 596
Score = 51 (23.0 bits), Expect = 3.7e-26, Sum P(5) = 3.7e-26
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 244 KKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQP 301
K+++D +ED + E S + + + K+ DD ++C ED+ QP
Sbjct: 210 KRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCG-EDVPQP 266
Score = 42 (19.8 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 38/154 (24%), Positives = 56/154 (36%)
Query: 14 DPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYL 73
D SS SSE K KDE+ + + + S SG ++ K S + + DY
Sbjct: 125 DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETES-DY- 182
Query: 74 DAKRQCED--------SKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSR--TKQMVF 123
+ K + + SKNG I G I + + S R T + +
Sbjct: 183 EPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSY 242
Query: 124 AKDE----GNDDLFP-CWSTVSDSVEPIDEAVGR 152
+DE +DDL C V E E + R
Sbjct: 243 KEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIER 276
Score = 38 (18.4 bits), Expect = 3.5e-28, Sum P(5) = 3.5e-28
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 164 PFKDSGQSFIGLSPSLLS-QNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPID 219
P K G F SPS+L+ Q + K++ + + + + D SSS D
Sbjct: 78 PPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDD 134
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 234 (87.4 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 53/155 (34%), Positives = 86/155 (55%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
+ ++F Q MLD++E L S+ Y RLDG++ R V FN P + V++++
Sbjct: 1642 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1701
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LGLN+ A V+ ++ WNP + QA+DRAHRIGQ + V+V RL + T+E++I+
Sbjct: 1702 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQVKVVNVYRLITRGTLEEKIM 1761
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
LQ+ K + + ++ + Q + D L LF
Sbjct: 1762 GLQKFKMNIANTVISQENSSLQS--MGTDQLLDLF 1794
Score = 128 (50.1 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 56/190 (29%), Positives = 83/190 (43%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++++A L A R LSGTPIQN + +L+S F FL + F
Sbjct: 1398 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 1457
Query: 697 CSMIKVPI---------SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKV 744
+ PI S+ G + A+ + ++ LRR K +L +LPPK+
Sbjct: 1458 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQ-----DLPPKI 1512
Query: 745 IMLKQVDFTDEERDFYSQLEINSR-----DQFKEYAAAG--TVKQNYV---NILLMLLRL 794
I + + Y SR D+ AA T K ++ L L
Sbjct: 1513 IQDYYCTLSPLQVQLYEDFA-KSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYL 1571
Query: 795 RQACDHPLLV 804
R+ C+HP LV
Sbjct: 1572 RKLCNHPALV 1581
Score = 89 (36.4 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 345 GYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWM 404
G P P ++ KA ER L+ + G N + P + L ++Q+ ++W+
Sbjct: 1218 GIPDPPNMSEELIQLKAK-ERHFLEQLLDGKKLENYKIPVP---INAELRKYQQDGVNWL 1273
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ +I ++
Sbjct: 1274 AFLNKYKLH---GILCDDMGLGKTLQSICIL 1301
Score = 74 (31.1 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--SSRTKDPCELAKFDVVITTYSIVS 563
+LVVCP ++ W +E+ K S+ L+ L Y G + R + ++ + ++V+ +Y +V
Sbjct: 1325 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLVVASYDVVR 1383
Query: 564 MEV 566
++
Sbjct: 1384 NDI 1386
Score = 52 (23.4 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 23/97 (23%), Positives = 42/97 (43%)
Query: 250 VKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSH----VDDEPDICILEDISQPARSN 305
+KED+ ++ + + + LSP +Q KS VD+ L + ++ +
Sbjct: 1500 MKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAALSEETEKPKLK 1559
Query: 306 QSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSD 342
+ + + L R C NH AL V+T QH + +
Sbjct: 1560 ATGHVFQALQYLRKLC-NHP-AL---VLTPQHPEFKN 1591
Score = 47 (21.6 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 190 EEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPS 240
++ E+ ++++ A++ ++ ++R+P + NL S PY PS
Sbjct: 881 KKEENTLVQNYAAQWMAKLLQQCTTRTPCPNSKIIKNLCSSLCVDPYLTPS 931
Score = 43 (20.2 bits), Expect = 1.7e-12, Sum P(4) = 1.7e-12
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465
+ E L +G + Q L K + AL+L + P F+ + K + +L + +
Sbjct: 1552 ETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKNTTE-KLAAQNSSLHDIQHAP 1610
Query: 466 QVNGLDLVKQESDYCRVVPNGSSAKS 491
+++ L KQ C + NGS+++S
Sbjct: 1611 KLSAL---KQLLLDCGL-GNGSTSES 1632
Score = 41 (19.5 bits), Expect = 1.6e-28, Sum P(5) = 1.6e-28
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 148 EAVGRNSSYHDGCNSFPF-KDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKR---AR 203
+AV N +D + P K S + ++ S + ++ + LI E+
Sbjct: 226 DAVETNEKSNDSTDGEPEEKRRKTSNVVINQSAVDSKVLIDNIPDSSPLIEETNEWPLES 285
Query: 204 FCQEICD 210
FC+E+C+
Sbjct: 286 FCEELCN 292
Score = 38 (18.4 bits), Expect = 1.4e-28, Sum P(6) = 1.4e-28
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 4 YINTGDTIFGDPSSFNF 20
YI DT+ DP++ +F
Sbjct: 651 YIAGADTVMEDPTTRDF 667
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 228 (85.3 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 57/168 (33%), Positives = 95/168 (56%)
Query: 969 PGDSNDLHGG-DTLDNISDENEKIAA--KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1025
P D N+ + + L ++ + K+ K I ++ G + ++FSQ +MLD+L LK
Sbjct: 763 PPDDNEFYNKQEALQHLIRSSGKLILLDKLLI-RLRERGNRVLIFSQMVRMLDILAEYLK 821
Query: 1026 DSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084
++RLDG++ R +A+ FN E ++S +A LG+N+ +A V++ D
Sbjct: 822 YRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 881
Query: 1085 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132
WNP + QA RAHRIGQ + V++ RL K +VE+ IL ++ K++MV
Sbjct: 882 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL--ERAKKKMV 927
Score = 162 (62.1 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 47/208 (22%), Positives = 97/208 (46%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W + +DEA +KN + + + ++ R ++GTP+QN++ +L+S F+
Sbjct: 599 LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 658
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
+ F+ ++ F + K GY L L+ +LRR K D E +LP KV +
Sbjct: 659 EKFSSWEDF----EEEHGKGREYGYASLHKELEPFLLRRVKK---DVEK--SLPAKVEQI 709
Query: 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF 807
+++ + ++ +Y + + + + T ++NI++ L++ C+H L+K
Sbjct: 710 LRMEMSALQKQYYKWILTRNYKALSKGSKGST--SGFLNIMM---ELKKCCNHCYLIKPP 764
Query: 808 DSNSLLRSSVEMAKKLPQERQMYLLNCL 835
D N + + ++ LL+ L
Sbjct: 765 DDNEFYNKQEALQHLIRSSGKLILLDKL 792
Score = 76 (31.8 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 52/203 (25%), Positives = 81/203 (39%)
Query: 241 TLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDE--PDICILEDI 298
TL ++ + G+K+ + K + L SPE ++ + C+ + D+ I+E I
Sbjct: 333 TLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYN--CQQELTDDLHKQYQIVERI 390
Query: 299 SQPARSNQSLVLG------KTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLT 352
A SNQ G K + S CS AL ++ Y P
Sbjct: 391 I--AHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQARIDEYFSRNQSKTTPFK 448
Query: 353 GLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSL 412
+K + R VA++ QP S G ++ L +Q L+W+
Sbjct: 449 DCKVLKQRP---RF---VALK--KQP----SYIGGHESLELRDYQLNGLNWLAHSWCKGN 496
Query: 413 HCSGGILADDQGLGKTISTIALI 435
C ILAD+ GLGKTI TI+ +
Sbjct: 497 SC---ILADEMGLGKTIQTISFL 516
Score = 55 (24.4 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS------RTKD---P-CELAKFDVVI 556
L+V P S L W E++ T ++ +VY G RT + P + KF++++
Sbjct: 530 LLVVPLSTLTSWQREIQ---TWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILL 586
Query: 557 TTYSIV 562
TTY I+
Sbjct: 587 TTYEIL 592
Score = 44 (20.5 bits), Expect = 1.4e-28, Sum P(5) = 1.4e-28
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 164 PFKDSGQSFIGLSPSLLS-QNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPID 219
P K G F SPS+L+ Q V K++ + S +E D SSS D
Sbjct: 78 PPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS--EE--DSSSSEDSAD 130
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 238 (88.8 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1192 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1228
Score = 184 (69.8 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 924 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 975
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 976 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1030
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 1031 HPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLL 1065
Score = 61 (26.5 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 758 ILADEMGLGKTIQTIVFL 775
Score = 40 (19.1 bits), Expect = 2.2e-08, Sum P(4) = 2.2e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1863 KVLNQLEELLSDMKADVTRLPATLS 1887
Score = 39 (18.8 bits), Expect = 1.5e-28, Sum P(4) = 1.5e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 854 KFHVLLTSYELITID 868
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 238 (88.8 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1123 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1182
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1183 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1242
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1243 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1279
Score = 184 (69.8 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 915 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 974
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 975 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 1026
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 1027 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1081
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 1082 HPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLL 1116
Score = 61 (26.5 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 809 ILADEMGLGKTIQTIVFL 826
Score = 40 (19.1 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1881 KVLNQLEELLSDMKADVTRLPATLS 1905
Score = 39 (18.8 bits), Expect = 1.6e-28, Sum P(4) = 1.6e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 905 KFHVLLTSYELITID 919
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 238 (88.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1123 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1182
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1183 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1242
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1243 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1279
Score = 184 (69.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 915 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 974
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 975 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 1026
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 1027 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1081
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 1082 HPYLFPVAAMESPKLPSGAYEGGALIKSSGKLLLL 1116
Score = 61 (26.5 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 809 ILADEMGLGKTIQTIVFL 826
Score = 40 (19.1 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1915 KVLNQLEELLSDMKADVTRLPATLS 1939
Score = 39 (18.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 905 KFHVLLTSYELITID 919
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 238 (88.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1251 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1287
Score = 184 (69.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 923 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 982
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 983 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 1034
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 1035 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1089
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 1090 HPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLL 1124
Score = 61 (26.5 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 817 ILADEMGLGKTIQTIVFL 834
Score = 40 (19.1 bits), Expect = 2.4e-08, Sum P(4) = 2.4e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1922 KVLNQLEELLSDMKADVTRLPATLS 1946
Score = 39 (18.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 913 KFHVLLTSYELITID 927
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 238 (88.8 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1068 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFC 1127
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1128 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1187
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1188 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1224
Score = 183 (69.5 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 860 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 919
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 920 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 971
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 972 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1026
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 1027 HPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLL 1061
Score = 61 (26.5 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 754 ILADEMGLGKTIQTIVFL 771
Score = 40 (19.1 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1861 KVLNQLEELLSDMKADVTRLPATLS 1885
Score = 39 (18.8 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 850 KFHVLLTSYELITID 864
Score = 37 (18.1 bits), Expect = 5.4e-26, Sum P(4) = 5.4e-26
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 459 DEEDNGIQVNGLDLVKQESDYCRVVPNG 486
D E+ G + + +YCRV +G
Sbjct: 434 DYEEEGEEEGEKEEEDDHMEYCRVCKDG 461
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 238 (88.8 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1070 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1129
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1130 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1189
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1190 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1226
Score = 183 (69.5 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 862 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 921
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 922 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 973
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 974 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1028
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 1029 HPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLL 1063
Score = 61 (26.5 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 756 ILADEMGLGKTIQTIVFL 773
Score = 40 (19.1 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1861 KVLNQLEELLSDMKADVTRLPATLS 1885
Score = 39 (18.8 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 852 KFHVLLTSYELITID 866
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 238 (88.8 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 56/159 (35%), Positives = 86/159 (54%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058
+K G + ++FSQ TKMLDLLE L +Y R+DG ++ R +A+ FN +
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118
++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R + +VE
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 1119 DRILALQQKKREMVASAF----GEDETGGQQTRLTVDDL 1153
+RI Q KR+M+ + G G ++ +DD+
Sbjct: 1192 ERIT--QVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDI 1228
Score = 183 (69.5 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 58/215 (26%), Positives = 105/215 (48%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ I L + W +V+DEA +KN++++ R G + + L+GTP+QN +++L+
Sbjct: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL + F + F ISK KKL +L MLRR K + N
Sbjct: 924 HLLNFLTPERFNNLEGFLEEF-ADISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----N 975
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K ++ +V+ + ++ +Y I +R+ F+ + G N V++L +++ L++ C+
Sbjct: 976 MPAKTELIVRVELSPMQKKYYKY--ILTRN-FEALNSRGG--GNQVSLLNIMMDLKKCCN 1030
Query: 800 HPLL--VKGFDSNSLLRSSVEMAKKLPQERQMYLL 832
HP L V +S L + E + ++ LL
Sbjct: 1031 HPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLL 1065
Score = 61 (26.5 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI TI +
Sbjct: 758 ILADEMGLGKTIQTIVFL 775
Score = 40 (19.1 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 1015 KMLDLLEASLKDSSIQYRRLDGTMS 1039
K+L+ LE L D RL T+S
Sbjct: 1865 KVLNQLEELLSDMKADVTRLPATLS 1889
Score = 39 (18.8 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 551 KFDVVITTYSIVSME 565
KF V++T+Y +++++
Sbjct: 854 KFHVLLTSYELITID 868
Score = 39 (18.8 bits), Expect = 3.4e-26, Sum P(4) = 3.4e-26
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 460 EEDNGIQVNGLDL-VKQESD----YCRVVPNG 486
EED+ + G + K+E D YCRV +G
Sbjct: 434 EEDDDYEEEGEEEGEKEEEDDHMEYCRVCKDG 465
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 249 (92.7 bits), Expect = 2.1e-28, Sum P(4) = 2.1e-28
Identities = 53/159 (33%), Positives = 87/159 (54%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PE 1055
+ +K + ++FSQ TKMLD+LE L+ +Y R+DG ++ R +A+ FN +
Sbjct: 1061 LKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQ 1120
Query: 1056 VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115
V ++S +A LG+N+ A V++ D WNP + QA RAHRIGQ V + R +N
Sbjct: 1121 QFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRN 1180
Query: 1116 TVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLN 1154
+VE+R+ + ++K M+ GG+ T +L+
Sbjct: 1181 SVEERVTQVAKRKM-MLTHLVVRPGMGGKGANFTKQELD 1218
Score = 163 (62.4 bits), Expect = 2.1e-28, Sum P(4) = 2.1e-28
Identities = 47/184 (25%), Positives = 91/184 (49%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ + A L + W +V+DEA +K+++++ R + L+GTP+QN +++L+
Sbjct: 856 LISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELF 915
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL D F ++F +SK + K+L +L MLRR K +L N
Sbjct: 916 HLLNFLSRDKFNDLQAFQGEF-ADVSKE--EQVKRLHEMLGPHMLRRLKTDVLK-----N 967
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
+P K + +V+ + ++ FY + + + + G+ + +NI++ L++ C+
Sbjct: 968 MPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSC--SLINIMM---DLKKCCN 1022
Query: 800 HPLL 803
HP L
Sbjct: 1023 HPYL 1026
Score = 60 (26.2 bits), Expect = 2.1e-28, Sum P(4) = 2.1e-28
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 418 ILADDQGLGKTISTIALI 435
ILAD+ GLGKTI T+ +
Sbjct: 752 ILADEMGLGKTIQTVTFL 769
Score = 48 (22.0 bits), Expect = 2.1e-28, Sum P(4) = 2.1e-28
Identities = 7/15 (46%), Positives = 14/15 (93%)
Query: 551 KFDVVITTYSIVSME 565
KF+V++T+Y ++SM+
Sbjct: 846 KFNVLLTSYELISMD 860
Score = 48 (22.0 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 842 CGICNDPPEDAVVSICG---HVFCNQCICERLTADDNQCPTRNC 882
C +C D E C H FC + + D +CP +C
Sbjct: 440 CRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCSC 483
Score = 39 (18.8 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 725 RRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFK 772
R KG G+ + L K++ ++ D +DEE+D E +S +F+
Sbjct: 258 RGKKGRRPSGK-VPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFE 304
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 250 (93.1 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 60/172 (34%), Positives = 95/172 (55%)
Query: 991 IAAKCSIDSIK--LGGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDK 1045
IAA + ++I + ++F+Q MLD++E L S+ Y R+DG++ R
Sbjct: 1764 IAAATANETINESTNQHRVLIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHS 1823
Query: 1046 AVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105
V FN+ P + V++++ LGLN+ A V+ L+ WNP + QA+DRAHRIGQ +
Sbjct: 1824 IVNQFNSDPTIDVLLLTTHVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKV 1883
Query: 1106 VSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
V+V RL T+E++I+ LQ+ K + + D + QT T + LN LF
Sbjct: 1884 VNVYRLITSGTLEEKIMGLQKFKLNIANTVINHDNSS-LQTMSTNELLN-LF 1933
Score = 146 (56.5 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 49/144 (34%), Positives = 70/144 (48%)
Query: 637 VLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 696
+LDE IKN +T++ +A L++ R LSGTPIQN + +L+S F FL K F
Sbjct: 1513 ILDEGHIIKNAKTKLTQAAKRLQSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKLF 1572
Query: 697 CSMIKVPI--SKNPVKGYKKLQA-VLKTIMLRRTKGTLL----DGEPIINLPPKVIMLKQ 749
+ PI SK+P K +A VL L R L + + +LPPK+I +
Sbjct: 1573 NELYSKPILASKDPKCSTKDQEAGVLAMEALHRQVLPFLLRRLKEDVLADLPPKIIQDRY 1632
Query: 750 VDFTDEERDFYSQLEINSRDQFKE 773
+ + + Y SR QFKE
Sbjct: 1633 CNLSPLQIRLYDYF---SRTQFKE 1653
Score = 86 (35.3 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 348 GVP-LTGLG-GMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMV 405
GVP GL + + +ER L+ + G N + L ++Q+ ++W+
Sbjct: 1333 GVPDPEGLDQDLIQQKQEERKFLEQLLDGSKVENYPLPIR---INTELRKYQQDGVNWLA 1389
Query: 406 QKETSSLHCSGGILADDQGLGKTISTIALI 435
LH GIL DD GLGKT+ TI +I
Sbjct: 1390 FLNKYKLH---GILCDDMGLGKTLQTICII 1416
Score = 85 (35.0 bits), Expect = 2.8e-28, Sum P(4) = 2.8e-28
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 426 GKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPN 485
G + L ++ + + D L LN + +GI + + L K C ++
Sbjct: 1361 GSKVENYPLPIRINTELRKYQQDGVNWLAFLN-KYKLHGILCDDMGLGKTLQTIC-IIAG 1418
Query: 486 GSSAKSFNFVEQAKGRPAAG---TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG--S 540
+ N+ Q KG P +LV+CP S++ W E++ K S ++ + Y G S
Sbjct: 1419 DDYHRRVNY--QEKGTPDFAPLPSLVICPPSLVGHWFYEIK-KFCSDSTMKPMTYMGNPS 1475
Query: 541 SRTKDPCELAKFDVVITTYSIVSMEV 566
R + +V+I +Y I+ ++
Sbjct: 1476 ERQAQRSKFKDHNVLIMSYDIMRNDI 1501
Score = 44 (20.5 bits), Expect = 3.6e-25, Sum P(3) = 3.6e-25
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 412 LHCSGGILADDQGLGKTISTIALILKERPPSFRTE--DDNKRQLETLNLDEEDNGIQVN 468
L SGG D++ L + L+LK++ + DD +LE+++ ED I +N
Sbjct: 160 LVASGGKEFDEEELDPNMDPKELLLKQKKKLKKQLGLDDLPIKLESMDSLVEDKDIVLN 218
Score = 42 (19.8 bits), Expect = 8.3e-18, Sum P(4) = 8.3e-18
Identities = 27/119 (22%), Positives = 52/119 (43%)
Query: 705 SKNPVKGYKKLQAVLKTIM---LRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEE-R--D 758
+K+ G ++A+ + ++ LRR K +L +LPPK+I + + + + R D
Sbjct: 1590 TKDQEAGVLAMEALHRQVLPFLLRRLKEDVL-----ADLPPKIIQDRYCNLSPLQIRLYD 1644
Query: 759 FYSQLEINS------RDQFKEYAAAGTVKQNY-------VNILLMLLRLRQACDHPLLV 804
++S+ + D+ ++ G K+ +I L LR+ C HP V
Sbjct: 1645 YFSRTQFKETIKNEVEDENEDADEGGESKKKKGGNGGGATHIFQALQYLRKLCGHPSFV 1703
Score = 38 (18.4 bits), Expect = 2.2e-28, Sum P(4) = 2.2e-28
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 57 GGPGKGSMLKVPAIDYLDAK 76
GG GK + +DY++AK
Sbjct: 369 GGGGKTIDTPIDKMDYVNAK 388
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 202 (76.2 bits), Expect = 2.4e-28, Sum P(4) = 2.4e-28
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W VV+DEA +KN ++ + + + L+GTP+QN +++L+S FL
Sbjct: 1087 LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEP 1146
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747
F +F ++ V+ KLQA+LK +MLRR K D E NL PK +
Sbjct: 1147 SRFPSETTFMQEFGDLKTEEQVQ---KLQAILKPMMLRRLKE---DVEK--NLAPKEETI 1198
Query: 748 KQVDFTDEERDFYSQ-LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG 806
+V+ T+ ++ +Y LE N F + + G + N N+L ++ LR+ C+HP L+ G
Sbjct: 1199 IEVELTNIQKKYYRAILEKN----FT-FLSKGGGQANVPNLLNTMMELRKCCNHPYLING 1253
Query: 807 FDSNSL 812
+ L
Sbjct: 1254 AEEKIL 1259
Score = 189 (71.6 bits), Expect = 2.4e-28, Sum P(4) = 2.4e-28
Identities = 51/168 (30%), Positives = 85/168 (50%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + ++FSQ + LD+LE L Y R+DG + R A+ F+ P+
Sbjct: 1292 LPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSK-PDS 1350
Query: 1057 S--VMIMSLKAASLGLNMVAACHVLLLDLWWNPT--TEDQAIDRAHRIGQTRPVSVLRLT 1112
V ++ +A LG+N+ AA ++ D WNP + QA R HRIGQ++ V + RL
Sbjct: 1351 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVKIYRLI 1410
Query: 1113 VKNTVEDRILALQQKK----REMVASAFGEDET--GGQQ-TRLTVDDL 1153
+N+ E + K + ++ S G + G QQ ++ ++DL
Sbjct: 1411 TRNSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIEDL 1458
Score = 74 (31.1 bits), Expect = 2.4e-28, Sum P(4) = 2.4e-28
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 486 GSSAKSFNFVEQAKGRPAAGT-LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--- 541
G + +S F+ + + G LV+ P S + W E R L+V+VYHGS
Sbjct: 991 GKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT----ELNVVVYHGSQASR 1046
Query: 542 RT--------KDPCELA-----KFDVVITTYSIVSMEVPK 568
RT KDP KF +ITT+ ++ + P+
Sbjct: 1047 RTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPE 1086
Score = 64 (27.6 bits), Expect = 2.4e-28, Sum P(4) = 2.4e-28
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
L +Q ++W++ + +C ILAD+ GLGKTI +I +
Sbjct: 961 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1000
WARNING: HSPs involving 326 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1159 1128 0.00090 123 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 576
No. of states in DFA: 628 (67 KB)
Total size of DFA: 506 KB (2234 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 101.05u 0.22s 101.27t Elapsed: 00:00:05
Total cpu time: 101.14u 0.23s 101.37t Elapsed: 00:00:05
Start: Fri May 10 06:30:09 2013 End: Fri May 10 06:30:14 2013
WARNINGS ISSUED: 2