BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001094
(1159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 2 OS=Arabidopsis
thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 340 bits (873), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 243/765 (31%), Positives = 358/765 (46%), Gaps = 173/765 (22%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 475
GGILAD GLGKT+ TI+L+L + T L + E + + + +D +
Sbjct: 414 GGILADAMGLGKTVMTISLLLAHSWKAASTG--------FLCPNYEGDKVISSSVDDLTS 465
Query: 476 ESDYCRVVPNGSSAKSFNF----VEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGS 531
P + K F +EQ G L+VCP ++L QW E+ GS
Sbjct: 466 --------PPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KPGS 516
Query: 532 LSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPM 591
LSV V++G SR KD L++ DVVITTY +++ E ++ D E
Sbjct: 517 LSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHEG--------------- 561
Query: 592 YCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 651
+ V WFR+VLDEA +IKN ++Q+
Sbjct: 562 ------------------------------------IYAVRWFRIVLDEAHTIKNSKSQI 585
Query: 652 ARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG 711
+ A L A RRWCL+GTPIQN ++DLYS RFLR +P+ + + +++ P + +G
Sbjct: 586 SLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERG 645
Query: 712 YKKLQAVLKTIMLRRTK-GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQ 770
K +Q++LK IMLRRTK T +G PI+ LPP + + ++ ERDFY L S+ +
Sbjct: 646 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVK 705
Query: 771 FKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG-------FDSNSLLR-------SS 816
F ++ G V NY +IL +LLRLRQ CDHP LV D N L + S
Sbjct: 706 FDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSG 765
Query: 817 VEM-AKKLPQER--QMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERL-TA 872
+E K +P E Q + + C IC + EDAV++ C H C +C+ +
Sbjct: 766 LEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNS 825
Query: 873 DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 932
CP C+ N++S+ QE+ T ++S+ E W S
Sbjct: 826 TSGLCPV--CR---------------NTVSK----QELITAPTESRF--QVDVEKNWVES 862
Query: 933 SKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIA 992
SKI A LE L+ LR S + SI
Sbjct: 863 SKITALLEELE-------------GLRSSGSKSI-------------------------- 883
Query: 993 AKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT 1052
+FSQWT LDLL+ L ++ + RLDGT+S R+K +K+F+
Sbjct: 884 ----------------LFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSE 927
Query: 1053 LPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLT 1112
+ V++MSLKA +G+N+ AA + ++D WWNP E+QA+ R HRIGQT+ V + R
Sbjct: 928 DGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFI 987
Query: 1113 VKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
VK TVE+R+ A+Q +K+ M++ A + E + +++L LF
Sbjct: 988 VKGTVEERMEAVQARKQRMISGALTDQEVRSAR----IEELKMLF 1028
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 340 bits (873), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 234/801 (29%), Positives = 386/801 (48%), Gaps = 152/801 (18%)
Query: 373 QGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 432
Q ++ P P G++ L+ HQ+ L W+ + E SS GGILADD GLGKT+ +
Sbjct: 371 QLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESS--KKGGILADDMGLGKTVQAL 427
Query: 433 ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 492
AL++ RP P S K+
Sbjct: 428 ALLVT-RP-------------------------------------------PESKSVKT- 442
Query: 493 NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAK 551
TL++ P S+L+QW E+ K+ +V ++HGSS+ E L
Sbjct: 443 -------------TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMS 489
Query: 552 FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSK 611
+D+V+TTY++++ E + DK E+ + E LP
Sbjct: 490 YDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLP---------------------- 527
Query: 612 QKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 671
+ W+RV+LDEAQ+IKN T AR C L + RWCLSGTP+
Sbjct: 528 ----------------FFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPM 571
Query: 672 QNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTKG 729
QN +++ YS +FLR P++ + SF +P+S N K+ + +LK ++LRRTK
Sbjct: 572 QNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKN 631
Query: 730 TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL 789
T +DG+PI+ LPPK + + D + E +FY+ L+ ++ Q ++Y GT+ +Y ++L+
Sbjct: 632 TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLV 691
Query: 790 MLLRLRQACDHPLLVKGF-----DSNSLLRSSVEMAKKLPQE--RQMYLLNCLEASLAIC 842
+LLRLRQAC HP L+ D++S + + ++ E ++ L+ L+ C
Sbjct: 692 LLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQ-----C 746
Query: 843 GICNDPPEDAVVSI-CGHVFCNQCICERLTADDN---QCPTRNCKIRLSLSSVF--SKAT 896
+C D + ++ + CGH C +C+ +T+ ++ Q N + S+ + ++
Sbjct: 747 SLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERL 806
Query: 897 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNH 956
L+ +L +R G P +D+KL + + L K N + N
Sbjct: 807 LSYALFRRYSGMA-PIVDADNKL-----------------RTENISELLPKQYSNILENR 848
Query: 957 SLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKM 1016
+ + D ++ + ++I K D I ++FSQ+
Sbjct: 849 QM------GMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKI-------LIFSQFVSF 895
Query: 1017 LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1076
L+L + I+Y G +S R++A+ +F P V V+++SLKA ++GLN+ A
Sbjct: 896 LELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCAN 955
Query: 1077 HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF 1136
HV++LD +WNP E+QA+DRAHRIGQ +PV++LR+ NT+E+R+LALQ +KRE++ SA
Sbjct: 956 HVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSAL 1015
Query: 1137 GEDETGGQQTRLTVDDLNYLF 1157
GE + + +RL +L++LF
Sbjct: 1016 GE-KGLREISRLNTKELSFLF 1035
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 313 bits (803), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 240/791 (30%), Positives = 353/791 (44%), Gaps = 165/791 (20%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDD 448
L V LL HQ +WM E SS C GG++ADD GLGKT
Sbjct: 246 LLVSLLPHQVEGHAWMESMEQSS-KC-GGVMADDMGLGKT-------------------- 283
Query: 449 NKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLV 508
IQ L L ++ D R L+
Sbjct: 284 ----------------IQTIALLLTQKSQDPLR----------------------KTNLI 305
Query: 509 VCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELAKFDVVITTYSIVSMEVP 567
V ++L QWAEEL KV LSV ++HGS++ D EL+++DVV+TTYS+++ E+
Sbjct: 306 VVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYEM- 364
Query: 568 KQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627
K+++ PP CS
Sbjct: 365 ------KQNDAFNNNNPATATPPPACS--------------------------------- 385
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W+R+VLDEA +I+N T A+ C L AK RWCLSGTPIQN ID+ YS +FLR
Sbjct: 386 LLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRI 445
Query: 688 DPFAVYKSFCSMIKVPISKNPV----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
P+ V+ F I P+ K+L+ +L + + RRTK T ++ PI+NLPPK
Sbjct: 446 KPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPK 505
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLL 803
I V+ EER Y++ +++ Y Y +L+ LLRLRQ C HP L
Sbjct: 506 TIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWL 565
Query: 804 VK--GFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSI-CGHV 860
VK D++ +R S + + + C +C DP V I CGH
Sbjct: 566 VKSSSLDNSFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHF 625
Query: 861 FCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLV 920
C +C+ + GQ+ + + + +
Sbjct: 626 TCQECMSMLV------------------------------------GQKYGSSSTSTIIA 649
Query: 921 EAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDT 980
+ P C G S + A +LQ++ P + L N S +S L +
Sbjct: 650 KCPMCRGNIVQDSLVDAT--ILQAIHGPLNSL---KQLELDMNQSF-SEQESIKLRWENR 703
Query: 981 LDNISDENEKIAAKCSIDSIKLG--------------GEKAIVFSQWTKMLDLLEASLKD 1026
+D + + A S KL EK +V+SQ+++ L L+ LK
Sbjct: 704 IDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKL 763
Query: 1027 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086
+I++ R DGTMS R K++ FN +V VM++SLKA S+GLN+ A HV+L + ++N
Sbjct: 764 ENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYN 823
Query: 1087 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQT 1146
P+ EDQAIDR HR+GQ +PV+V R K+T+E+RI+++Q+KKR++V A +E +
Sbjct: 824 PSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNE-NNPLS 882
Query: 1147 RLTVDDLNYLF 1157
RL ++L YLF
Sbjct: 883 RLDKEELLYLF 893
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 307 bits (786), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 216/697 (30%), Positives = 317/697 (45%), Gaps = 186/697 (26%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
+LVV PT L QW E+ +KG L + +YHG+SRT D +L +DVV+TTY+++
Sbjct: 233 SLVVAPTVALMQWKNEIEQH--TKGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 566 VPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVA 625
KQ G R+ + K P
Sbjct: 291 FRKQNYGF---------------------------------RRKNGLFKQP--------- 308
Query: 626 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685
L + ++RV+LDEA +IK+ ++ ARA L+ ++RWCLSGTP+QN I ++YS RFL
Sbjct: 309 SVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFL 368
Query: 686 RYDPFAVYKSFCS----------------------------------MIKVPISKNPVKG 711
+PF Y FC+ M+K I K V+G
Sbjct: 369 NINPFTKY--FCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLK-NIQKFGVEG 425
Query: 712 -----YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 766
+ +Q +LK IMLRRTK D + LPP+++ +++ F +EE+D Y L +
Sbjct: 426 PGLESFNNIQTLLKNIMLRRTKVERADD---LGLPPRIVTVRRDFFNEEEKDLYRSLYTD 482
Query: 767 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQE 826
S+ ++ + G V NY NI ++ R+RQ DHP LV ++ P +
Sbjct: 483 SKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLV------------LKRLNNFPGD 530
Query: 827 RQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCI---CERLTADDNQ--CPTRN 881
+ + IC +CND E+ + S C H FC CI E ++N+ CP
Sbjct: 531 ---------DIGVVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPV-- 579
Query: 882 CKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD-YSDSKLVEAPSCEGVWYNSSKIKAALE 940
C I LS+ LSQ P E+ D + +V + G W +S+KI+A +E
Sbjct: 580 CHIGLSID-----------LSQ--PALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVE 626
Query: 941 VLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSI 1000
L K R N T
Sbjct: 627 ---ELYKLRSNKRT---------------------------------------------- 637
Query: 1001 KLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMI 1060
K+IVFSQ+T MLDL+E LK + Q +L G+MS RD+ +K F + V +
Sbjct: 638 ----IKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFL 693
Query: 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120
+SLKA + LN+ A V +LD WWNP+ E Q+ DR HRIGQ RPV + R +++++E R
Sbjct: 694 VSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEAR 753
Query: 1121 ILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
I+ LQ+KK M+ + +DE +RLT DL +LF
Sbjct: 754 IIELQEKKANMIHATINQDEAAI--SRLTPADLQFLF 788
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 438
+ PDG + + LL Q L W++ +E S +GG+LAD+ G+GKTI TIAL++ +
Sbjct: 174 SKQPDG-MTIKLLPFQLEGLHWLISQEESIY--AGGVLADEMGMGKTIQTIALLMND 227
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 303 bits (775), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 236/793 (29%), Positives = 357/793 (45%), Gaps = 160/793 (20%)
Query: 409 TSSLHCSGGILADDQGLGKTISTIALIL--KERPPSFRTEDDNKRQLETLNLDEEDNGIQ 466
TS GGILAD G+GKT +LI +E P+ E + +E +DEE +
Sbjct: 510 TSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEG-EIDEEPASKR 568
Query: 467 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKV 526
+ + S+ R VP +SF P A TLVVCP S+ QW +ELR K+
Sbjct: 569 IKFKQVTL--SNQWRAVPTAPKVESF---------PRA-TLVVCPVSLAAQWHDELR-KM 615
Query: 527 TSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 581
+ +GS++ V++G R LA + DV++T+Y ++ E K
Sbjct: 616 SQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKW------------ 663
Query: 582 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEA 641
+ +D P + G L + R+VLDEA
Sbjct: 664 -LRTKDRP--------------------------------NYEGGSLYDHEFLRIVLDEA 690
Query: 642 QSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIK 701
+I+N V++AC+ L+ +RRW L+GTPI N ++DLYS FLR P+ Y F S +
Sbjct: 691 HNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVT 750
Query: 702 VPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFY 760
VP K +Q +L++ +LRR K DG I++LPPK + +K + F+ ER Y
Sbjct: 751 VPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIY 810
Query: 761 SQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG-------------- 806
LE ++ +F + A G NY +IL ML++LRQ DHPLLV G
Sbjct: 811 KFLEERAKKRFIDLDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILE 870
Query: 807 ---FDSNSLLRSSVEM-----AKKLPQE-RQMYLLNCL-----EASLAICGICNDPPEDA 852
+ LR + M + P++ + Y L + IC +C++ D
Sbjct: 871 SGAGNGEGNLRDMIAMYAGGIRAETPEDVDKAYAAKVLKELGEQEDTPICELCSNEMFDE 930
Query: 853 VVSICGHVFCNQCICERLTADDNQCPTRNC------KIRLS-LSSVFSKATLNNSLSQRQ 905
V+ C H C CI E + ++Q +C I+L+ L SV + N ++
Sbjct: 931 VLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAY 990
Query: 906 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 965
PG P +K++ + +L K + VT+ LR
Sbjct: 991 PGGRDPN----------------------LKSSNDTTVTLGKV--DLVTSTKLRALLR-- 1024
Query: 966 ICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1025
L+ I E+ K KA+VFSQ+T LDL+EA+L
Sbjct: 1025 --------------QLEEIRQEDPKA--------------KALVFSQFTSFLDLIEATLT 1056
Query: 1026 DSSIQYRRLDGTMSVFARDKAVKDFN-TLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084
I++ R DGTMS R +++F E ++++SLKA +GLN+ A +V L+D W
Sbjct: 1057 KQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTW 1116
Query: 1085 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQ 1144
WN E QAIDR HR+GQ +PV V R +K TVE RI+ +Q+ K +V ++ G +
Sbjct: 1117 WNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS---NGAK 1173
Query: 1145 QTRLTVDDLNYLF 1157
T+ D+ +F
Sbjct: 1174 TKETTLADIKKIF 1186
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 303 bits (775), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 237/793 (29%), Positives = 354/793 (44%), Gaps = 160/793 (20%)
Query: 409 TSSLHCSGGILADDQGLGKTISTIALIL--KERPPSFRTEDDNKRQLETLNLDEEDNGIQ 466
TS GGILAD G+GKT +LI +E P+ E + +E +DEE +
Sbjct: 510 TSQNLSRGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEG-EIDEEPASKR 568
Query: 467 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKV 526
+ + S+ R VP +SF P A TLVVCP S+ QW +ELR K+
Sbjct: 569 IKFKQVTL--SNQWRAVPTAPKVESF---------PRA-TLVVCPVSLAAQWHDELR-KM 615
Query: 527 TSKGSLSVLVYHGSSRTKDPCELA-----KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 581
+ +GS++ V++G R LA + DV++T+Y ++ E K
Sbjct: 616 SQQGSINSYVWYGGDRVDIEALLAGDGKERVDVIVTSYGTLTSEYQKW------------ 663
Query: 582 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEA 641
+ +D P + G L + R+VLDEA
Sbjct: 664 -LRTKDRP--------------------------------NYEGGSLYDHEFLRIVLDEA 690
Query: 642 QSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIK 701
+I+N V++AC+ L+ +RRW L+GTPI N ++DLYS FLR P+ Y F S +
Sbjct: 691 HNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNYSFFRSFVT 750
Query: 702 VPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFY 760
VP K +Q +L++ +LRR K DG I++LPPK + +K + F+ ER Y
Sbjct: 751 VPFLNQDHKALNVVQYILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIY 810
Query: 761 SQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG-------------- 806
LE ++ +F E A G NY +IL ML++LRQ DHPLLV G
Sbjct: 811 KFLEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILE 870
Query: 807 ---FDSNSLLRSSVEM------AKKLPQERQMYLLNCL-----EASLAICGICNDPPEDA 852
+ LR + M A+ + Y L + IC +C++ D
Sbjct: 871 SGAGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVLKELGEQEDTPICELCSNEMFDE 930
Query: 853 VVSICGHVFCNQCICERLTADDNQCPTRNC------KIRLS-LSSVFSKATLNNSLSQRQ 905
V+ C H C CI E + ++Q +C I+L+ L SV + N ++
Sbjct: 931 VLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAY 990
Query: 906 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 965
PG P K++ + +L K + VT+ LR
Sbjct: 991 PGGRDPNS----------------------KSSNDTTVTLGKV--DLVTSTKLRALLR-- 1024
Query: 966 ICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1025
L+ I E+ K KA+VFSQ+T LDL+EA+L
Sbjct: 1025 --------------QLEEIRQEDPKA--------------KALVFSQFTSFLDLIEATLT 1056
Query: 1026 DSSIQYRRLDGTMSVFARDKAVKDFN-TLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084
I++ R DGTMS R +++F E ++++SLKA +GLN+ A +V L+D W
Sbjct: 1057 KQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTW 1116
Query: 1085 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQ 1144
WN E QAIDR HR+GQ +PV V R +K TVE RI+ +Q+ K +V ++ G +
Sbjct: 1117 WNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLS---NGAK 1173
Query: 1145 QTRLTVDDLNYLF 1157
T+ D+ +F
Sbjct: 1174 TKETTLADIKKIF 1186
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2
Length = 1009
Score = 293 bits (750), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 192/637 (30%), Positives = 295/637 (46%), Gaps = 133/637 (20%)
Query: 506 TLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
TL++CP SVL W ++ + S L+ VY+G R ++P L+K D+V+TTY+I++ +
Sbjct: 478 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHD 537
Query: 566 VPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVA 625
G K D
Sbjct: 538 Y-----GTKGD------------------------------------------------- 543
Query: 626 GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685
PL + W RV+LDE +I+N Q +A L ++RRW L+GTPIQN++ DL+S FL
Sbjct: 544 SPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFL 603
Query: 686 RYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745
+ PF + + I+ P++ G ++LQ+++K I LRRTK + + G+P++ LP + +
Sbjct: 604 KLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKV 663
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP-LLV 804
++ + +DEER Y ++ R Y GTV +Y ++L +LLRLRQ C H LL
Sbjct: 664 FIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLT 723
Query: 805 KGFDSN--SLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 862
SN S + E+ KKL ++ ++ L + S C IC D V++ C HVFC
Sbjct: 724 NAVSSNGPSGNDTPEELRKKLIRKMKLILSS---GSDEECAICLDSLTVPVITHCAHVFC 780
Query: 863 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA 922
CIC+ + N+ P C + + ++ P +E+ D +E
Sbjct: 781 KPCICQVI---QNEQPHAKCPL--------CRNDIHEDNLLECPPEELARDSEKKSDME- 828
Query: 923 PSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLD 982
W +SSKI A + L L K N
Sbjct: 829 ------WTSSSKINALMHALTDLRKKNPNI------------------------------ 852
Query: 983 NISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFA 1042
K++V SQ+T L L+E LK S + RLDG+M+
Sbjct: 853 -----------------------KSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889
Query: 1043 RDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100
R ++++ F S +M++SLKA +GLN+ AA V L+D WNP EDQ DR HR+
Sbjct: 890 RVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRL 949
Query: 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1137
GQ + V + + VK++VE+ +L +Q KKRE+ A AFG
Sbjct: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFG 986
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 26/78 (33%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSL--------------------------HCSGGI 418
P + PLL HQ+ AL+WMV +E S + GGI
Sbjct: 232 PAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGI 291
Query: 419 LADDQGLGKTISTIALIL 436
LADD GLGKT++ IA+IL
Sbjct: 292 LADDMGLGKTLTAIAVIL 309
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 253 bits (647), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 207/759 (27%), Positives = 326/759 (42%), Gaps = 200/759 (26%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 475
GGILAD+ GLGKTI+T+AL VN
Sbjct: 458 GGILADEMGLGKTIATLAL--------------------------------VNS------ 479
Query: 476 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLS 533
VP NF E RP A TL+V P S+L QW E + +
Sbjct: 480 -------VPYD------NFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVC 526
Query: 534 VLVYHGSSRTKDPCELAKFD------VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGED 587
L Y T L D V+ITTY V E
Sbjct: 527 RLHYGEDQETNLAWSLCNPDNSKIPIVMITTYGTVLNE---------------------- 564
Query: 588 LPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNH 647
+ SK+R + KG K G L V +FR++LDE +I+N
Sbjct: 565 ----FTRLSKRR------NSKGELPKVG------------LYSVKFFRIILDEGHNIRNR 602
Query: 648 RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 707
T+ A++ + L++ R+W L+GTPI N +DDLYS +FL DP+ + + + + +P +
Sbjct: 603 NTKTAKSVYELQSSRKWILTGTPIVNRLDDLYSLTKFLELDPWNNFSYWKTFVTLPFEQK 662
Query: 708 PV-KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 766
+ + ++++L+ I LRRTK +G+P++ LP K ++++Q+ F D+E Y +
Sbjct: 663 KISQTLDVVKSILEPIFLRRTKSQKKNGKPLVELPAKEVVIEQIKFNDDEEKLYQWFKDR 722
Query: 767 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDS----------------- 809
+ F E +G + + Y IL +LRLRQ C H L+ G
Sbjct: 723 AYASFAEGIKSGQLLRRYTQILTHILRLRQVCCHVDLIGGAHEMDDEIIEAEQDEDMRKF 782
Query: 810 -NSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPP---EDAVVSICGHVFCNQC 865
S+ + + A + +MY L C IC P + VV+ C H FC C
Sbjct: 783 LTSIKENQIRFANDTDVKEKMYNLYGKIKEENECSICTQVPIPYSEMVVTPCAHTFCLSC 842
Query: 866 ICERL-----TADDNQCPTRNCKIRLSLSSVF---SKATLNNSLSQRQPGQEIPTDYSDS 917
I E L + CP NC+ +S +F ++ T N + R Q+ DYS
Sbjct: 843 ILEHLDFQKELKKEKLCP--NCRSPISKYQLFRIRNQPTKGNEI--RFHTQKDAPDYSFQ 898
Query: 918 KLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHG 977
+ P+ +SSKI+A + L++L N+
Sbjct: 899 LYLYDPN-----RSSSKIQALVRHLKALHSQSPNS------------------------- 928
Query: 978 GDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQY--RRLD 1035
K IVFSQ++ LD++++ LK +S ++ + D
Sbjct: 929 ----------------------------KVIVFSQFSSYLDIIQSELKLASEEFIVFKFD 960
Query: 1036 GTMSVFARDKAVKDFNTLPE---VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQ 1092
G +++ R K ++ FN E V+++++SLKA +GLN+ A ++D WW+P+ EDQ
Sbjct: 961 GRLNMNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQ 1020
Query: 1093 AIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
AIDR HRIGQ V V+R ++N++E ++L +Q++K+++
Sbjct: 1021 AIDRIHRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1059
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2
Length = 1245
Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 212/800 (26%), Positives = 358/800 (44%), Gaps = 166/800 (20%)
Query: 413 HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDL 472
HC GGILAD+ GLGKTI ++LI R N+ G + +L
Sbjct: 556 HCLGGILADEMGLGKTIEMLSLIHSHR-----------------NVSPSRQGPS-SSTEL 597
Query: 473 VKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSL 532
V+ S ++P ++ TLVV PTS+L QW E K + +G++
Sbjct: 598 VRMPSSSSAILPAPNT-----------------TLVVAPTSLLSQWESEAM-KASEQGTM 639
Query: 533 SVLVYHGSSRTKDPCEL------AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGE 586
VL+Y+G ++ + EL A +++IT+Y +V E +
Sbjct: 640 KVLMYYGVDKSTNLQELCSAGNPAAPNIIITSYGVVLSESRQLA---------------- 683
Query: 587 DLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN 646
M+ S+++ G L V +FRV+LDEA IKN
Sbjct: 684 ----MFNSNTQ----------------------------GGLFSVDFFRVILDEAHVIKN 711
Query: 647 HRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI-S 705
R++ ARAC+ LRA RW L+GTPI N ++DL+S RFL+ +P+ + + + I VP S
Sbjct: 712 RRSKTARACYELRATHRWVLTGTPIVNRLEDLFSLVRFLQVEPWNNFSFWKTFITVPFES 771
Query: 706 KNPVKGYKKLQAVLKTIMLRRTKGTLL-DGEPIINLPPKVIMLKQVDFTDEERDFYSQLE 764
K+ V+ +Q VL+ ++LRRTK +GEP++ LP + I + +V+ +++ER+ Y +
Sbjct: 772 KDYVRALNVVQTVLEPLVLRRTKTMKTPEGEPLVPLPRRTIDIVEVELSEQEREIYDYIF 831
Query: 765 INSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG------------------ 806
++ F + AGT+ +++ I +LRLRQ C HP+L +
Sbjct: 832 TRAKRTFNDNIEAGTLLKSFSTIFAQILRLRQTCCHPILTRNKTIVADEEDAAATADAAN 891
Query: 807 -----FDSNSLL-RSSVEMAKKLPQERQ--------MYLLNCLEASLAICGICNDPPE-D 851
D L+ R S M E Q L S C IC++ P D
Sbjct: 892 ELKDDMDLQELIDRFSASMENADTAEAQDPSAKFTTHALRQIQTESSGECPICSEEPMID 951
Query: 852 AVVSICGHVFCNQCICERLTAD-DNQCPTR--NCKIRLSLSSVFSKATLNNSLSQRQPGQ 908
V+ C H C +C+ + + D P R +C+ ++ +F + + P +
Sbjct: 952 PAVTACWHSACKKCLEDYIRHQTDKGVPPRCFSCRAPVTSRDIFQ--VIRHQSPSSTPTE 1009
Query: 909 EIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICC 968
TD S +P + + +I +L + L+ + H+L + N
Sbjct: 1010 ---TDLYSSTPASSP------HPAPRI--SLRRIHPLSPSAHTSAKIHALINHLNR---V 1055
Query: 969 PGDSNDL---HGGDTLDNISDENEKIAAKCSIDSIKLGG-----EKAIVFSQWTKMLDLL 1020
P ++ + LD I + K I ++L G +A V +++ +
Sbjct: 1056 PANTKSVVFSQFTSFLDLIGAQ----LTKAGISYVRLDGTMPQKARAEVLAEFNRTETFH 1111
Query: 1021 EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080
+ + + +G + R + ++ +V+++SL+A +GLN+ AA +V +
Sbjct: 1112 QEEIDED-------EGPDTPRVRISSKNSRSSPKSPAVLLISLRAGGVGLNLTAASNVFM 1164
Query: 1081 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVAS---AFG 1137
+D WW+ E QAIDR HR+GQ R VSV R VK+++E R+L +Q++K + S G
Sbjct: 1165 MDPWWSFAIEAQAIDRVHRMGQLRDVSVTRFIVKDSIEGRMLRVQERKMNIAGSLGLRVG 1224
Query: 1138 EDETGGQQTRLTVDDLNYLF 1157
D + ++ + +++L LF
Sbjct: 1225 GDGSEDEKRKERIEELKLLF 1244
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 210/778 (26%), Positives = 338/778 (43%), Gaps = 165/778 (21%)
Query: 413 HCSGGILADDQGLGKTISTIALILKER--PPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470
HC GGILAD+ GLGKTI ++L+ R PP+ + L L + V+G
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNLPPT--------QSLGNLT------RLPVSG- 553
Query: 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKG 530
VVP + TLVV P S+L QW E K + G
Sbjct: 554 -----------VVPAPYT-----------------TLVVAPMSLLAQWEGEAL-KASRNG 584
Query: 531 SLSVLVYHGSSRTKDPCEL------AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIE 584
S+ VL+Y+G+ + + E+ A ++++T+Y +V E +
Sbjct: 585 SMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSYGVVM----------SEHRTHQALAP 634
Query: 585 GEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSI 644
G P G L V +FRV+LDEA I
Sbjct: 635 GTSWTP-----------------------------------GNLFSVDFFRVILDEAHII 659
Query: 645 KNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 704
KN R++ ARAC+ L+A RW L+GTPI N ++DL+S RFLR +P+ + + + I P
Sbjct: 660 KNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWKTFITAPF 719
Query: 705 -SKNPVKGYKKLQAVLKTIMLRRTKGTLL-DGEPIINLPPKVIMLKQVDFTDEERDFYSQ 762
SK V+ +Q VL+ ++LRRTK +GEP++ LP + I +++V+ ++ER+ Y+
Sbjct: 720 ESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNH 779
Query: 763 LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG---------------- 806
+ ++ F AAGT+ ++Y I LLRLRQ C HP+L +
Sbjct: 780 IYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPILTRNKAIVADEEDAAAAADQ 839
Query: 807 -------FDSNSLLR------SSVEMAKKLPQERQMYLLNCLEA----SLAICGICNDPP 849
D L+ S E + + P + + L S C IC++ P
Sbjct: 840 DSDLKDDMDLQELINRFTATTSDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEP 899
Query: 850 E-DAVVSICGHVFCNQCICERLTADDN---QCPTRNCKIRLSLSSVFSKATLNNSLSQRQ 905
D V+ C H C C+ + + + Q +C+ L+ +F + + Q
Sbjct: 900 MIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDIF-------EVVRYQ 952
Query: 906 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGS 965
PT+ + S + + V Y+SS+ + P + + H+
Sbjct: 953 SPNTTPTEQTPSSI----GGDNV-YSSSQPPPPPRISLRRINPLSPSAHTSAKIHALLAH 1007
Query: 966 IC-CPGDSNDL---HGGDTLDNISDENEKIAAKCSIDSIKLGG-----EKAIVFSQWTKM 1016
+ P + + LD I + K I ++L G +A V +Q+TK
Sbjct: 1008 LVRVPAGTKSVVFSQFTSFLDLIGPQ----LTKAGISFVRLDGTMAQKARAEVLAQFTKF 1063
Query: 1017 LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1076
+ L Q + K K ++ +V+++SLKA +GLN+ AA
Sbjct: 1064 ETFTQEELD----QAESTSAPSGLTPTPKTPKQSSSPSSPTVLLISLKAGGVGLNLTAAS 1119
Query: 1077 HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVAS 1134
+V ++D WW+ E QAIDR HR+GQ R V+V+R VK+++E+R+L +Q++K + S
Sbjct: 1120 NVFMMDPWWSFAIEAQAIDRVHRMGQLRDVNVVRFIVKDSIEERMLRVQERKMGIAGS 1177
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 209/762 (27%), Positives = 311/762 (40%), Gaps = 201/762 (26%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 475
GGILAD+ GLGKTIS +ALI PS D K L T Q
Sbjct: 455 GGILADEMGLGKTISILALI--TMVPS-----DTKHLLTT------------------AQ 489
Query: 476 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVL 535
E P G + + K A+ TL+V P S+L QW E +V L
Sbjct: 490 EKP-----PVGHLSLELG-ISTVKPYTASTTLIVVPMSLLPQWRNEFV-RVNDGNGLYCE 542
Query: 536 VYHGSSRTKDPCELAKF----DVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPM 591
VY+ + + L K VV+TTY +V E K D E E
Sbjct: 543 VYYAGNVSNLRTLLVKQKSPPSVVLTTYGVVQTEWSKLQQFDYEASNEG----------- 591
Query: 592 YCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQV 651
L V +FR++LDE +I+N T+
Sbjct: 592 ------------------------------------LFSVEFFRIILDEGHNIRNRTTKT 615
Query: 652 ARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVK- 710
++A L ++R+W L+GTPI N +DDL+S +F+ ++P+ + + P K
Sbjct: 616 SKAVMALTSRRKWVLTGTPIMNRLDDLFSLIKFMNFEPWCKIDYWRQFVSDPFEKKDYSS 675
Query: 711 GYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRD 769
+ +QAV+ I+LRRTK DG P++ LPPK ++++ + F+D E Y +
Sbjct: 676 ALEVIQAVMGPILLRRTKNMKDEDGNPLVQLPPKEVVIEMIRFSDTEAGLYKYFLSKAEH 735
Query: 770 QFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK------------------------ 805
KE A G + + Y ILL +LRLRQ C H L+
Sbjct: 736 SVKESLARGDLLKKYSTILLHILRLRQVCCHFKLLGSQDENDEDLKNMKLINDIPDISTL 795
Query: 806 -GFDSNSLLRSSVEMAKKLPQERQMY----LLNCLEASLAICGICNDPPEDAVVSICGHV 860
G DS S SS M + + Y L LE S+ C + P V + CGH
Sbjct: 796 LGEDSQSPGSSSEGMPDFIEDFKTKYPNSDALKDLECSICTCEAIS-PLTSVVFTRCGHP 854
Query: 861 FCNQCICERLTADDNQ-----CPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYS 915
FC C+ E + + + CP NC+ + + +N L P YS
Sbjct: 855 FCESCLLEYIQFQNKKGSETICP--NCRAAVESRYLLKLEDINGKLE--------PVPYS 904
Query: 916 DSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDL 975
++K SSKI A + L+ L N
Sbjct: 905 NTK------------KSSKIVALIRHLKHLQDTSAN------------------------ 928
Query: 976 HGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSI----QY 1031
E+ +VFSQ++ LD+LE L+ S +
Sbjct: 929 -----------------------------EQVVVFSQFSSYLDILENELRQSFASDICEI 959
Query: 1032 RRLDGTMSVFARDKAVKDFN--TLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1089
+ DG + + R + F +L ++ V+++SLKA +GLN+ A H ++D WW+P
Sbjct: 960 YKFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGM 1019
Query: 1090 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
EDQA+DR HRIGQ+ V + R V+N++E+++L +Q+KKR +
Sbjct: 1020 EDQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSL 1061
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 164/575 (28%), Positives = 277/575 (48%), Gaps = 122/575 (21%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L V +FR++LDE +I+N T+ ++A LR+ R+W L+GTPI N +DDL+S +FL
Sbjct: 616 LFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTPIINRLDDLFSLVQFLNL 675
Query: 688 DPFAVYKSFCSMIKVPISK-NPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVI 745
+P++ + + VP K N + + + AVL+ ++LRRTK +DG+P+++LPPK +
Sbjct: 676 EPWSHINYWKRYVSVPFEKGNYAQAFDVINAVLEPVLLRRTKNMKDVDGKPLVSLPPKEV 735
Query: 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
+++++ + E+ Y + ++ + KE A G + +NY NIL+ +LRLRQ C H L+K
Sbjct: 736 IVEKLQLSSSEKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCHLDLLK 795
Query: 806 -----------GFDSNSLLRSSVEMAKKLPQERQMY---LLNCLEASL------------ 839
++++ SS+ M K + + L+ L A+
Sbjct: 796 KTPDLGDPDLEDLENSTQNISSILMPKNIKSPKSSISQDKLDALSANFRDIHSASEQLPS 855
Query: 840 ---AICGI-CNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKI-RLSLSSVFSK 894
AIC C +P ++ C H FC C+ E + N+ + NC R+ +S
Sbjct: 856 FECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPISEA--- 912
Query: 895 ATLNNSLSQRQP-----GQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPR 949
N L ++P G E+ + +S + S+KIKA L L+ + +
Sbjct: 913 ----NVLKLKEPIDAERGYELISFHSH-------------FQSTKIKALLRHLKQIQE-- 953
Query: 950 GNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIV 1009
PG E+ IV
Sbjct: 954 -----------------TSPG----------------------------------EQIIV 962
Query: 1010 FSQWTKMLDLLEASL-----KDSSIQYRRLDGTMSVFARDKAVKDFN--TLPEVSVMIMS 1062
FSQ++ LD+LE L +D I Y + DG + + R + ++ F+ L + ++++S
Sbjct: 963 FSQFSSFLDILEIELRSHLPRDQVIIY-KFDGRLDMKERTRILEQFHDKDLSCIKLLLLS 1021
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LK +GLN+ A ++D WW+P EDQAIDR HRIGQ + V V+R + N+VE+++L
Sbjct: 1022 LKTGGVGLNLTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKML 1081
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+Q++KR M+ DE +Q R ++++ LF
Sbjct: 1082 RIQERKR-MLGDIVEGDEAERRQKR--IEEIQMLF 1113
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 39/160 (24%)
Query: 415 SGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE-EDNGIQVNGLDLV 473
+GGILAD+ GLGKTIS +ALI T + DE + I+ +
Sbjct: 478 NGGILADEMGLGKTISALALIC------------------TASYDEAHEKKIESTKKPSM 519
Query: 474 KQESDYCRVVP-NGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSL 532
K+ S P S K + + TL+V P S+L QW E K
Sbjct: 520 KEMSSQVDSSPLRHSQHKHDTYAYRT-------TLIVVPMSLLNQWQSEFE-KANKDLKK 571
Query: 533 SVLVYHGSSRTKDPCELAKF-------DVVITTYSIVSME 565
+Y+G++ KD L + V+ITTY I+ E
Sbjct: 572 RCEIYYGNN-IKD---LRAYVLGPNAPSVIITTYGIIQSE 607
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 220/834 (26%), Positives = 358/834 (42%), Gaps = 200/834 (23%)
Query: 371 AMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTIS 430
A Q + Q + + DG+ L +L+ + K GGIL+D+ GLGKT++
Sbjct: 488 AAQNLQQDHV--NVEDGIFFYANLHSGEFSLAKPILKTM----IKGGILSDEMGLGKTVA 541
Query: 431 TIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAK 490
+L+L P D K D E+ + N +P+
Sbjct: 542 AYSLVLS--CPHDSDVVDKKL------FDIENTAVSDN--------------LPS----- 574
Query: 491 SFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG----SSRTKDP 546
+ + K + TL+V P S+L QW+ E K + + VY+G S +T
Sbjct: 575 --TWQDNKKPYASKTTLIVVPMSLLTQWSNEF-TKANNSPDMYHEVYYGGNVSSLKTLLT 631
Query: 547 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSD 606
VV+TTY IV E K G DE+
Sbjct: 632 KTKTPPTVVLTTYGIVQNEWTKHSKGRMTDED---------------------------- 663
Query: 607 RKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL 666
++I +G L V ++R+++DE +I+N T ++A L+ K +W L
Sbjct: 664 --------------VNISSG-LFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVL 708
Query: 667 SGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLR 725
+GTPI N +DDLYS +FL DP+ + + + P SKN + + + A+L+ ++LR
Sbjct: 709 TGTPIINRLDDLYSLVKFLELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLR 768
Query: 726 RTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 784
RTK DG+P++ LPPK +++K++ F+ + Y L + K A G + + Y
Sbjct: 769 RTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKY 828
Query: 785 VNILLMLLRLRQACDHPLLVKGFDSN-------------------SLLR----------S 815
IL+ +LRLRQ C HP L+ D N SL+R S
Sbjct: 829 STILVHILRLRQVCCHPGLIGSQDENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFS 888
Query: 816 SVEMAKKLPQERQMYLLNCLEASLAICGICNDPPED---AVVSICGHVFCNQCICERLTA 872
E+ + + + Y N SL C IC P D A+ + CGH FC +C+ E +
Sbjct: 889 KEELDAMIQRLKVKYPDNKSFQSLE-CSICTTEPMDLDKALFTECGHSFCEKCLFEYIEF 947
Query: 873 DDN-----QCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE----AP 923
++ +CP NC+ ++ + + N S+SK +E +P
Sbjct: 948 QNSKNLGLKCP--NCRNQIDACRLLALVQTN----------------SNSKNLEFKPYSP 989
Query: 924 SCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDN 983
+ + SSKI A L+ LQ L D+
Sbjct: 990 ASK-----SSKITALLKELQLLQ-----------------------------------DS 1009
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
+ E I ++ S L E FS+ D+ + D + + ++ FA
Sbjct: 1010 SAGEQVVIFSQFSTYLDILEKELTHTFSK-----DVAKIYKFDGRLSLKERTSVLADFA- 1063
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
VKD++ ++++SLKA +GLN+ A H ++D WW+P+ EDQAIDR HRIGQT
Sbjct: 1064 ---VKDYS---RQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQT 1117
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
V V+R +++++E+++L +Q+KKR + A DE ++ R ++++ LF
Sbjct: 1118 NSVKVMRFIIQDSIEEKMLRIQEKKR-TIGEAMDTDEDERRKRR--IEEIQMLF 1168
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 147/477 (30%), Positives = 228/477 (47%), Gaps = 98/477 (20%)
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 464
+Q T++ GGILAD GLGKT+ TIALIL RP E+++ + +N D+ +
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALILA-RPGRGNPENEDV-LVADVNADKRNRK 728
Query: 465 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRN 524
L VK AKG GTL++CP ++L QW +EL
Sbjct: 729 EIHMALTTVK-----------------------AKG----GTLIICPMALLSQWKDELET 761
Query: 525 KVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIE 584
+ ++SVLVY+G RT D +A D V+ T V KQ
Sbjct: 762 H-SKPDTVSVLVYYGGDRTHDAKAIASHD-VVLTTYGVLTSAYKQ--------------- 804
Query: 585 GEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSI 644
D+ ++ W+R+VLDEA +I
Sbjct: 805 -------------------------------------DMANSIFHRIDWYRIVLDEAHTI 827
Query: 645 KNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 704
K+ +TQ A+A + L + RWCL+GTP+QN ++DLYS FL +P+ + + +I+ P
Sbjct: 828 KSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPY 887
Query: 705 SKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 763
+G K ++A+L+ +MLRRTK T +G I+ LPP + + + + ++ ERDFY+ L
Sbjct: 888 ENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTAL 947
Query: 764 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV-------KGFDSNSLLRSS 816
S+ QF ++ A G V NY NIL +LLRLRQ C+HP LV + D +SL R
Sbjct: 948 FKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRF 1007
Query: 817 VE-----MAKKLPQERQM--YLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCI 866
++ +++ P + + + + + C IC + +D V++ C H C +C+
Sbjct: 1008 LDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECL 1064
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 122/196 (62%), Gaps = 12/196 (6%)
Query: 966 ICCPGDSNDLHGGDTLDNISDENEKIAA--KCSIDSIKLGG--EKAIVFSQWTKMLDLLE 1021
I CP DS + D + N E+ K++ KC ++ IK G EK+IVFSQWT LDLLE
Sbjct: 1089 ISCPTDS--IFRVDVVKNWK-ESSKVSELLKC-LEKIKKSGSGEKSIVFSQWTSFLDLLE 1144
Query: 1022 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1081
L+ ++ R DG ++ R+K +K+FN + ++++MSLKA +GLN+ AA V L+
Sbjct: 1145 IPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLM 1204
Query: 1082 DLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1141
D WWNP E+QAI R HRIGQ R V V R VK+TVE+R+ +Q +K+ M+A A ++E
Sbjct: 1205 DPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEV 1264
Query: 1142 GGQQTRLTVDDLNYLF 1157
+ RL ++L LF
Sbjct: 1265 --RSARL--EELKMLF 1276
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 189/383 (49%), Gaps = 60/383 (15%)
Query: 500 GRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTY 559
G TL++CP SVL W ++ V S+ L+ VY+G R +D L+K D+++TTY
Sbjct: 466 GERTRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTY 525
Query: 560 SIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGL 619
+I++ + G K+D
Sbjct: 526 NILTHDY-----GTKDD------------------------------------------- 537
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
PL + W RV+LDE +I+N Q +A L A+RRW L+GTPIQN++ DL+
Sbjct: 538 ------SPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLW 591
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
S FL+ PF + + +I+ P++ G ++LQ+++K I LRRTK + + G+P++
Sbjct: 592 SLLSFLKLKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLE 651
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
LP + + ++ + ++EER Y ++ + Y GTV +Y ++L +LLRLRQ C
Sbjct: 652 LPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICC 711
Query: 800 HP-LLVKGFDSNSLLRSSV-EMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSIC 857
H LL G S+ RS E +K+ E+ +L+ S C IC D V++ C
Sbjct: 712 HTHLLTNGMSSSGPSRSDTPEELRKMLIEKMKIILSS--GSDEECAICLDSLTFPVITHC 769
Query: 858 GHVFCNQCICERLTADD--NQCP 878
HVFC CIC+ + ++ +CP
Sbjct: 770 AHVFCKPCICQVIHSEQPHAKCP 792
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSL 1063
K++V SQ+T L L+E LK S + RLDG+M+ R ++++ F S +M++SL
Sbjct: 847 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSL 906
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA +GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L
Sbjct: 907 KAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 966
Query: 1124 LQQKKREMVASAFGEDET 1141
+Q KR++ A AFG +T
Sbjct: 967 IQNTKRDLAAGAFGTKKT 984
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 26/78 (33%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSL--------------------------HCSGGI 418
P + PLL HQ+ AL+WM+ +E S + GGI
Sbjct: 232 PAEAIETPLLPHQKQALAWMIARENSKELPPFWEQRNDLYYNTITNFSVKERPENVHGGI 291
Query: 419 LADDQGLGKTISTIALIL 436
LADD GLGKT++ IA+IL
Sbjct: 292 LADDMGLGKTLTAIAVIL 309
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 196/409 (47%), Gaps = 68/409 (16%)
Query: 481 RVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540
+++ G+SA+ + RP TL++CP SVL W ++ + S L+ VY+G
Sbjct: 451 KILKKGASAQRVQRKLMFEERPRT-TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP 509
Query: 541 SRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRK 600
R +DP L+K D+V+TTY+I++ + G K D
Sbjct: 510 DRIRDPALLSKQDIVLTTYNILTHDY-----GTKGD------------------------ 540
Query: 601 CPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRA 660
PL + W RV+LDE +I+N Q +A L A
Sbjct: 541 -------------------------SPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEA 575
Query: 661 KRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLK 720
+RRW L+GTPIQN++ DL+S FL+ PF + + I+ P++ G ++LQ+++K
Sbjct: 576 ERRWVLTGTPIQNSLKDLWSLLSFLKLKPFVDREWWHRTIQRPVTMGDEGGLRRLQSLIK 635
Query: 721 TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTV 780
I LRRTK + + G+P++ LP + + ++ + +DEER Y ++ + Y GTV
Sbjct: 636 NITLRRTKTSKIKGKPVLELPERPVFIQHITLSDEERKIYQSVKSEGKATIGRYFNEGTV 695
Query: 781 KQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLA 840
+Y ++L +LLRLRQ C H L+ + + SS P+E + L+ ++ L+
Sbjct: 696 LAHYADVLGLLLRLRQICCHTHLL-----TNTVSSSGPSGNDTPEELRKKLIKKMKLILS 750
Query: 841 I-----CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKI 884
C IC D V++ C HVFC CIC+ + N+ P C +
Sbjct: 751 SGSDEECAICLDSLTVPVITHCAHVFCKPCICQCI---QNEQPHAKCPL 796
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 20/210 (9%)
Query: 968 CPGDSNDLHGGDTL---------DNISDENEKIAAKCSIDSI---------KLGGEKAIV 1009
CP ND+HG + L D+ N + + I+++ K K++V
Sbjct: 794 CPLCRNDIHGDNLLECPPEELACDSEKKSNMEWTSSSKINALMHALIDLRTKNPNIKSLV 853
Query: 1010 FSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAAS 1067
SQ+T L L+E LK S + RLDG+M+ R ++++ F S +M++SLKA
Sbjct: 854 VSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGG 913
Query: 1068 LGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1127
+GLN+ AA V L+D WNP EDQ DR HR+GQ + V + + VK++VE+ +L +Q
Sbjct: 914 VGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNT 973
Query: 1128 KREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
KRE+ A AFG + + + ++++ L
Sbjct: 974 KRELAAGAFGTKKNANEMKQAKINEIRTLI 1003
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 26/78 (33%)
Query: 385 PDGVLAVPLLRHQRIALSWMVQKETSSL--------------------------HCSGGI 418
P + PLL HQ+ AL+WMV +E S + GGI
Sbjct: 232 PAEAVETPLLPHQKQALAWMVSRENSRELPPFWELRNDLYYNTITNFSEKDQPENVHGGI 291
Query: 419 LADDQGLGKTISTIALIL 436
LADD GLGKT++ IA+IL
Sbjct: 292 LADDMGLGKTLTAIAVIL 309
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1
SV=2
Length = 1138
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 228/484 (47%), Gaps = 122/484 (25%)
Query: 357 MKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG 416
+ S+A DE L +++ A A P G L VPLL HQ+ AL+W++ +E S G
Sbjct: 514 ITSEAIDE---LHRSLKSCPGETAVAEDPAG-LKVPLLLHQKQALAWLLWRE--SQKPQG 567
Query: 417 GILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQE 476
GILADD GLGKT++ IALIL ++ + + + +R L + D+ +
Sbjct: 568 GILADDMGLGKTLTMIALILTKK--NQQKSKEKERSEPVTWLSKNDSSV----------- 614
Query: 477 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLV 536
F ++GTL+VCP S++ W E+ +VTS L + +
Sbjct: 615 -----------------FT-------SSGTLIVCPASLIHHWKNEVEKRVTS-NRLRIYL 649
Query: 537 YHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSS 596
YHG +R++ L+ +D+VITTYS+++ E+P K EGE
Sbjct: 650 YHGPNRSRHAKVLSTYDIVITTYSLLAKEIPT------------TKQEGEV--------- 688
Query: 597 KKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACW 656
P ++ L ++ + PL +V W R++LDEA ++KN R Q + A
Sbjct: 689 ------PGAN------------LSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTSIAVC 730
Query: 657 GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQ 716
L+A+ RW ++GTPIQN + D+YS +FLR PF + S+ K + +KG ++L
Sbjct: 731 KLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFDEF----SLWKSQVDNGSMKGGERLS 786
Query: 717 AVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY- 774
+ K+++LRRTK L G+P++ LP + L ++ +++ER Y SR + Y
Sbjct: 787 ILTKSLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIFLARSRSALQSYL 846
Query: 775 ---------------------------------AAAGTVKQNYVNILLMLLRLRQACDHP 801
AA + + + V++L LLRLRQ C H
Sbjct: 847 KRQEGRGSHHGRSPDNPFSRVAQEFGSSVSQGCPAADSQRPSTVHVLSQLLRLRQCCCHL 906
Query: 802 LLVK 805
L+K
Sbjct: 907 SLLK 910
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 2/157 (1%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062
G +K+++ SQWT ML ++ LK + + Y +DG+++ R V+ FN VM++S
Sbjct: 984 GSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLIS 1043
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
L A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL
Sbjct: 1044 LLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKIL 1103
Query: 1123 ALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159
LQ+KK+++ E G T+LT+ DL LF +
Sbjct: 1104 QLQEKKKDLAKQVLSGSE--GPVTKLTLADLKILFGI 1138
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 154/501 (30%), Positives = 230/501 (45%), Gaps = 138/501 (27%)
Query: 494 FVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFD 553
+ + +G+P TLVV P + QW EE+ + +LS +Y+G +R EL+ +D
Sbjct: 295 LLSEPRGKP---TLVVAPVVAIMQWKEEI--DTHTNKALSTYLYYGQARDISGEELSSYD 349
Query: 554 VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 613
VV+T+Y+++ S RK +R G ++K
Sbjct: 350 VVLTSYNVIE--------------------------------SVYRK-----ERSGFRRK 372
Query: 614 KGPDGLLLDIVAGP--LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 671
G +V L ++ ++R++LDEA IK+ ARA GLR R+ CLSGTP+
Sbjct: 373 NG-------VVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPL 425
Query: 672 QNAIDDLYSYFRFLRYDPFAVY----------------KSFC----------------SM 699
QN I +L+S RFLR DPFA Y +S C M
Sbjct: 426 QNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEM 485
Query: 700 IKVPISKNPVKG-----YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTD 754
+K PI K +G +KK+ ++LK IMLRRTK L+ + LPP+V+ +++ F +
Sbjct: 486 LK-PIQKFGYEGPGKLAFKKVHSLLKHIMLRRTK---LERADDLGLPPRVVEVRKDLFNE 541
Query: 755 EERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR 814
EE D Y L ++S+ +F Y A G V NY NI ++ R+RQ DHP LV R
Sbjct: 542 EEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASK-----R 596
Query: 815 SSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA-- 872
+V++ QE +C IC++ +DA+ S C H FC C+ E + A
Sbjct: 597 KTVDIEN---QEN------------IVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAG 641
Query: 873 --DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGV-- 928
++ CP+ C I LS+ LS P E D+S+ K A +
Sbjct: 642 DGENVNCPS--CFIPLSI-----------DLS--APALE---DFSEEKFKNASILNRIDM 683
Query: 929 --WYNSSKIKAALEVLQSLAK 947
W +S+KI+A +E L L K
Sbjct: 684 NSWRSSTKIEALVEELYLLRK 704
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K+IVFSQ+T MLDL+ L+ + +LDG M+ AR ++ F+ +++ ++SLKA
Sbjct: 710 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKA 769
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+ LN+ A V ++D WWN + QA+DR HRIGQ RP+ V+ L ++N++E +I+ LQ
Sbjct: 770 GGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQ 829
Query: 1126 QKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+KK +M+ + +DE Q L+V+D+ +LF
Sbjct: 830 EKKAQMIHATIDQDEKALNQ--LSVEDMQFLF 859
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 438
L + LL QR + W+ ++E SS GGILAD+ G+GKTI TIAL+L E
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSF--GGGILADEMGMGKTIQTIALLLSE 298
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/481 (28%), Positives = 213/481 (44%), Gaps = 124/481 (25%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 475
GGILAD+ GLGKTI ++LI P F T++
Sbjct: 524 GGILADEMGLGKTIEVLSLI--HSRPCFSTDE---------------------------- 553
Query: 476 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAG--TLVVCPTSVLRQWAEELRNKVTSKGSLS 533
+P F P A TLVV P S+L QW E KV+
Sbjct: 554 -------IPEA-------FRHSKPSLPVASRTTLVVAPMSLLDQWHSE-ACKVSQGTKFR 598
Query: 534 VLVYHGSSRTKD--PCELAKFD---VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDL 588
++Y+GS + D C + ++IT+Y ++ E
Sbjct: 599 SMIYYGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEF---------------------- 636
Query: 589 PPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHR 648
Q+ GL V WFRVVLDE +I+N
Sbjct: 637 ----------------------SQQSHSSGLF---------SVHWFRVVLDEGHNIRNRE 665
Query: 649 TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI-SKN 707
++ A+AC + ++ RW ++GTPI N +DDLYS +F+RY+P+ Y + + + +P SK+
Sbjct: 666 SKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRYEPWCNYTYWQTFVSLPYQSKD 725
Query: 708 PVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 766
+K +Q++L+ ++LRRTK T +G I+ LPPK + ++ +DF+D ER Y L
Sbjct: 726 VLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTK 785
Query: 767 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV-------KGFDS--------NS 811
++ AGT+ +NY IL +LLRLRQAC P+L+ + FD NS
Sbjct: 786 AKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLSNMTINSETFDDFEFSVEQFNS 845
Query: 812 LLRSSVEMAKKLPQE-RQMYLLNCLEASLAICGI-CNDPPEDAVVSICGHVFCNQCICER 869
L+ V K +P + ++ L EA + C I CN+P ++ ++ C H C C+ E
Sbjct: 846 LINQFVVTGKPIPSDILKIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEH 905
Query: 870 L 870
+
Sbjct: 906 I 906
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 99/153 (64%), Gaps = 3/153 (1%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
EK ++FSQ+T LD++ L+ + Y R DGTMS R A++ F P+V+V+I+SLK
Sbjct: 982 EKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISLK 1041
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A +GLN+ A HV ++D WW+ + E QAIDR HR+GQ +PV V R V++TVE+R+L +
Sbjct: 1042 AGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKI 1101
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
Q++K + G E G+Q +++D+ LF
Sbjct: 1102 QERKN-FITGTLGMSE--GKQQVQSIEDIKMLF 1131
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1
SV=2
Length = 1162
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 210/459 (45%), Gaps = 119/459 (25%)
Query: 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 441
A P G L VPLL HQ+ AL+W++ +E S GGILADD GLGKT++ IALIL ++
Sbjct: 560 AEDPAG-LKVPLLLHQKQALAWLLWRE--SQKPQGGILADDMGLGKTLTMIALILTQKNQ 616
Query: 442 SFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGR 501
+ E + L L+ D D C +F
Sbjct: 617 EKKEEKEKSTALTWLSKD------------------DSC------------DFT------ 640
Query: 502 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 561
+ GTL++CP S++ W E+ +V S L V +YHG +R L+ +D+VITTYS+
Sbjct: 641 -SHGTLIICPASLIHHWKNEVEKRVNS-NKLRVYLYHGPNRDSRARVLSTYDIVITTYSL 698
Query: 562 VSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 621
V+ E+P +K++ E I G +L +
Sbjct: 699 VAKEIPT----NKQEAE----IPGANLN-------------------------------V 719
Query: 622 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSY 681
+ + PL ++ W R++LDEA ++KN R Q + A L+A RW ++GTPIQN + D+YS
Sbjct: 720 EGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSL 779
Query: 682 FRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINL 740
+FLR PF + ++ + + KG ++L + K+++LRRTK L G P++ L
Sbjct: 780 LKFLRCSPFDEF----NLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVIL 835
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY-------------------------- 774
P + L + +++E Y+ SR + Y
Sbjct: 836 PQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEF 895
Query: 775 --------AAAGTVKQNYVNILLMLLRLRQACDHPLLVK 805
AA + + + V+IL LLRLRQ C H L+K
Sbjct: 896 GSEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLK 934
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK 1064
+K+++ SQWT ML ++ LK + Y +DG+++ R V+ FN VM++SL
Sbjct: 1010 QKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLL 1069
Query: 1065 AASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124
A +GLN+ H+ LLD+ WNP+ EDQA DR +R+GQ + V + R + TVE++IL L
Sbjct: 1070 AGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQL 1129
Query: 1125 QQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159
Q+KK+++ +G T+LT+ DL LF +
Sbjct: 1130 QEKKKDLAKQVLS--GSGESVTKLTLADLRVLFGI 1162
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 190/424 (44%), Gaps = 110/424 (25%)
Query: 389 LAVPLLRHQRIALSWMVQKET-SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED 447
+ + LL HQ L+W+ +ET S SGGILADD GLGKTI IALIL P
Sbjct: 229 MHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLPK----- 283
Query: 448 DNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTL 507
K +++ + V L L+KQ
Sbjct: 284 -KKHSIKS--------TLVVAPLSLIKQ-------------------------------- 302
Query: 508 VVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVP 567
W E V +K L+ +VYHG+SR K + ++DVVITTY I+ E
Sbjct: 303 ----------WESE----VQTKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSE-- 346
Query: 568 KQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627
+ S + S S +KK P
Sbjct: 347 ------------------------WVSHNTTGTDGKSPTEAKSYEKKKPS---------- 372
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L W+R++LDEA +IKN ++ A AC L+ RWCL+GTP+QN +D+LYS +FL
Sbjct: 373 LFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHI 432
Query: 688 DPFAVYKSFCSMIKVPI---SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEP-------I 737
+PF + I +P+ +N V +K+L+ +L IMLRRTK TLL+
Sbjct: 433 NPFNDQSVWKDQISLPLCQGEENLV--FKRLRMLLSVIMLRRTK-TLLEANAGKDGTGGA 489
Query: 738 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQA 797
+ L +++ F + ERDFYS L N + +G + +NY NIL +LLRLRQA
Sbjct: 490 LKLSKRLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQA 549
Query: 798 CDHP 801
C+HP
Sbjct: 550 CNHP 553
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Query: 998 DSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS 1057
D+++ G K I+FSQ+T LD+++ L+ + I + R DG M+ AR+K++ +
Sbjct: 665 DTVR-GLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQ 723
Query: 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117
V++ SLK +LGLN+ A V+L D+WWNP E+QAIDR HRIGQ R V V +L V+NT+
Sbjct: 724 VLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTI 783
Query: 1118 EDRILALQQKKREMVASAFGE-DETGGQQTRLTVDDLNYLF 1157
E++I+ LQ KR++ A G+ ++ +LT++DL +LF
Sbjct: 784 EEKIVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFLF 824
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 127/393 (32%), Positives = 193/393 (49%), Gaps = 52/393 (13%)
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLN-LDEEDNGIQVNGLDLVK 474
GGILAD+ GLGKTI +L+ R T D + +N +D + + K
Sbjct: 653 GGILADEMGLGKTIMVASLLHANR-----TSDPGEESEGEINAVDAAEGDVSTKRKGSAK 707
Query: 475 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 534
Q S + SS + +A +LVV P S++ QW +EL + ++ GSL+
Sbjct: 708 QTSLASAFAASTSSVDQRKALLKASVSKGKASLVVAPMSLIGQWRDELI-RASAPGSLTP 766
Query: 535 LVYHGSSRTKDPCEL--AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMY 592
++Y+ ++ +L K DVVIT+Y + E + ++G
Sbjct: 767 VLYYADTKGDLLAQLESGKVDVVITSYGTLVTEY-------------RRFLDGGG----- 808
Query: 593 CSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 652
+S+R S V+ PL + W RV+LDEA +IKN T A
Sbjct: 809 -----------ASNRHLS-------------VSAPLYCIDWLRVILDEAHNIKNRSTMNA 844
Query: 653 RACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGY 712
RAC L ++RRW L+GTPI N + DL+S +FLR +P+ + F S + P K
Sbjct: 845 RACCDLVSRRRWALTGTPIINRLTDLFSLLKFLRVEPWGDFSFFNSFVCKPFQAKSTKAL 904
Query: 713 KKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF 771
+Q +L++++LRR K DG+PI+ LPPK I++K+++F++ ER Y + + QF
Sbjct: 905 DVVQVILESVLLRREKKMKDKDGKPIVELPPKTIVVKELEFSELERRIYDNVYRRAYLQF 964
Query: 772 KEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV 804
A GTV +N I +L+RLRQA HP LV
Sbjct: 965 ASLKANGTVTRNLSVIFSVLMRLRQAVCHPSLV 997
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT---LPEVSVMIMS 1062
K ++FSQ+T LDL+E L + RLDG+ RDK V +F + V + ++S
Sbjct: 1229 KGVIFSQFTSFLDLIEPVLTRYRFHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLIS 1288
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LKA +GLN+ AA + LLD WWN + E+QAIDR HR GQT PVSV R +K+++EDRIL
Sbjct: 1289 LKAGGVGLNLTAANKIWLLDFWWNSSIENQAIDRIHRFGQTSPVSVFRYIIKDSIEDRIL 1348
Query: 1123 ALQQKKREMVASAFGED 1139
+Q++K ++ A D
Sbjct: 1349 LIQKRKDMLIKHALNTD 1365
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/520 (28%), Positives = 233/520 (44%), Gaps = 117/520 (22%)
Query: 413 HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDL 472
HC GGILAD+ GLGKTI ++LI R E E VN L
Sbjct: 573 HCLGGILADEMGLGKTIQMLSLIHSHRS-------------EVAIKAREAGPTSVNNLPR 619
Query: 473 VKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSL 532
+ P S K+ P TLVV P S+L QW E N + +G+
Sbjct: 620 L----------PTVSGQKT------TIDAPCT-TLVVAPMSLLAQWQSEAEN-ASKEGTF 661
Query: 533 SVLVYHGSSRTKDP----CELAKF---DVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEG 585
++Y+G+ + D CE DV+IT+Y +V E + L K
Sbjct: 662 KTMMYYGAEKNVDLVTMCCEANAANAPDVIITSYGVVLSEFTQ--LATK----------- 708
Query: 586 EDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIK 645
+ DR S+ GL + +FRV+LDEA +IK
Sbjct: 709 ------------------NGDRLSSR------GLF---------SLNFFRVILDEAHNIK 735
Query: 646 NHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI- 704
N + + +RAC+ + A+ RW L+GTPI N ++DL+S RFLR +P+ + + + I VP
Sbjct: 736 NRQAKTSRACYEIAAEHRWVLTGTPIVNRLEDLFSLVRFLRVEPWNNFSFWRTFITVPFE 795
Query: 705 SKNPVKGYKKLQAVLKTIMLRRTKGTLL-DGEPIINLPPKVIMLKQVDFTDEERDFYSQL 763
SKN V+ +Q VL+ +++RRTK DG+ ++ LPPK I + ++ ++ ER Y +
Sbjct: 796 SKNFVRALDVVQTVLEPLVMRRTKDMKTPDGQFLVPLPPKHIEIVDIELSEPERAVYDYV 855
Query: 764 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG----------------- 806
++ + AGTV + + +I +LRLRQ+C HP+LV+
Sbjct: 856 FNRAKRTLFDNMQAGTVMKAFTSIFAQILRLRQSCCHPVLVRNQEILADEEEANMAADVA 915
Query: 807 ------FDSNSLLR---SSVEMAKKLPQERQMYLLNCL-EASLAICGICNDPPE-DAVVS 855
D +L+ ++ + A K ++L + + ++ C IC + P D V+
Sbjct: 916 AGLADDMDLQTLIERFTATTDDASKTNNNFGAHVLRQIRDEAVNECPICAEEPMIDQAVT 975
Query: 856 ICGHVFCNQCICERLT--ADDNQCPT-RNCKIRLSLSSVF 892
C H C +C+ + + D N+ P C+ +++ +F
Sbjct: 976 GCWHSACKKCLLDYIKHQTDRNEVPRCFQCREHINIRDIF 1015
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 85/132 (64%), Gaps = 1/132 (0%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K++V SQ+T L L+ ++L I + RLDG+MS AR + +F + + V+++SLKA
Sbjct: 1070 KSLVISQFTSFLSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQSTNKFCVLLLSLKA 1129
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+GLN+ +A V ++D WW+ E QAIDR HR+GQ V V R VK +VE R+L +Q
Sbjct: 1130 GGVGLNLTSAKRVYMMDPWWSFAVEAQAIDRVHRMGQEDEVRVYRFIVKQSVEMRMLRVQ 1189
Query: 1126 QKKREMVASAFG 1137
++K+ +A++ G
Sbjct: 1190 ERKK-FIATSLG 1200
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 148/271 (54%), Gaps = 15/271 (5%)
Query: 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686
P+ K+ W R++LDEA +IKN Q +R L+A RRW ++GTPIQN DLYS FLR
Sbjct: 425 PVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLR 484
Query: 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIM 746
++PF++ + S+I+ P+ + KG +LQ ++ TI LRRTK + +I LPPK +
Sbjct: 485 FEPFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTK-----EKSLIGLPPKTVE 539
Query: 747 LKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH----PL 802
V+ + EER Y +E ++ + G++ +NY +L ++LRLRQ CD P
Sbjct: 540 TCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDMSLCPP 599
Query: 803 LVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 862
++ F ++ +SVE P+ Q + + C IC PP + +++ C H+FC
Sbjct: 600 ELRSFTTS----TSVEDVTDKPELLQKLVAALQDGEDFDCPICISPPTNIIITRCAHIFC 655
Query: 863 NQCICERLTADDNQCPTRNCKIRLSLSSVFS 893
CI + L CP C+ L+ S +++
Sbjct: 656 RACILQTLQRSKPLCPL--CRGSLTQSDLYN 684
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 90/134 (67%), Gaps = 4/134 (2%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS---VMIMS 1062
K++VFSQ+ KML LLE LK + RLDG M+V R + + +F PE++ V++ S
Sbjct: 727 KSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGN-PELTGPVVLLAS 785
Query: 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122
LKA+ G+N+ AA V L D WWNP E+QA+DR HRIGQ + V ++R+ +N++E+R+L
Sbjct: 786 LKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVL 845
Query: 1123 ALQQKKREMVASAF 1136
LQQKK+ + AF
Sbjct: 846 ELQQKKKNLANEAF 859
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSL--------------------------HCS 415
A P V+ L HQ+ L W++ +E S
Sbjct: 220 AEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLR 279
Query: 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 475
GG+ ADD GLGKT++ ++LI +R + T + L D E + I+ G +
Sbjct: 280 GGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPL-----DGEGDKIEKKGKKRGRG 334
Query: 476 ESD--YCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS 533
+S R N ++ TL+VCP SV+ W +L T G L
Sbjct: 335 KSSESVTRKKLKTDDVVGMNVSQKT-------TLIVCPPSVISAWITQLEEH-TVPGILK 386
Query: 534 VLVYHGSSRTKDPCELAKFDVVITTYSIVSME 565
V +YHG RT D EL K+D+V+TTY +++E
Sbjct: 387 VYMYHGGERTDDVNELMKYDIVLTTYGTLAVE 418
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/522 (26%), Positives = 229/522 (43%), Gaps = 119/522 (22%)
Query: 399 IALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNL 458
++L + VQ++ HC GGILAD+ GLGKTI ++L+ R
Sbjct: 501 LSLDFPVQEQ----HCLGGILADEMGLGKTIQMLSLVHTHR------------------- 537
Query: 459 DEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQW 518
+ + + V S+ ++ G +++S TLVV P S+L QW
Sbjct: 538 ----SEVALEARQSVVARSNVNQLTRLGKNSESI-------LDAPCTTLVVAPMSLLSQW 586
Query: 519 AEELRNKVTSKGSLSVLVYHGSSRTKDPCELA-------KFDVVITTYSIVSMEVPKQPL 571
E K + G++ +Y+G+ ++ + L D+VIT+Y +V E
Sbjct: 587 QSEA-EKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPDLVITSYGVVLSEF----- 640
Query: 572 GDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKV 631
SS + K +GL +
Sbjct: 641 --------------------------------SSLAARNGDKSFHNGLF---------SL 659
Query: 632 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA 691
+FR+++DEA IKN ++ ++AC+ + A RW L+GTPI N ++DL+S RFL +P+
Sbjct: 660 RFFRIIIDEAHHIKNRSSKTSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWN 719
Query: 692 VYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLL-DGEPIINLPPKVIMLKQ 749
+ + + I VP S + ++ +Q VL+ ++LRRTK DGEP++ LPPK I +
Sbjct: 720 NFSFWRTFITVPFESGDFMRALDVVQTVLEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVN 779
Query: 750 VDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG--- 806
V+ ++ ERD Y+ + ++ F + AGTV + + I +LRLRQ+C HP+LV+
Sbjct: 780 VELSETERDVYNYIFNKAKRTFSQNVEAGTVMKAFTTIFAQILRLRQSCCHPILVRNRDI 839
Query: 807 --------------------FDSNSLLRSSVEMAKKLPQE-RQMYLLNCLE----ASLAI 841
D SL+ S + K +E Q + + LE +
Sbjct: 840 VADEVEAGAAADAAAGLADDMDLESLITSFTAVTDKASKESNQTFGAHALEQIRDEAENE 899
Query: 842 CGIC-NDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNC 882
C +C +P D V+ C H C +C+ + + ++ C
Sbjct: 900 CPLCFEEPMNDQTVTGCWHSACKKCLLDYIKHQTDKAEVPRC 941
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 89/132 (67%), Gaps = 1/132 (0%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K++VFSQ+T L L+E +L ++I++ RLDG+M+ AR + +F +++++SL+A
Sbjct: 1004 KSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRA 1063
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+GLN+ +A V ++D WW+ E QAIDR HR+GQ V V R VK +VE+R+L +Q
Sbjct: 1064 GGVGLNLTSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLKVQ 1123
Query: 1126 QKKREMVASAFG 1137
++K+ +A++ G
Sbjct: 1124 ERKK-FIATSLG 1134
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 187/401 (46%), Gaps = 81/401 (20%)
Query: 507 LVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSM 564
L+V P SVLR W EL KV + + ++ GS + K +LA++D V+ +Y ++
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLARYDAVLVSYQTLAN 1056
Query: 565 EV----PKQPLGDKED--------EEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQ 612
E PK+ G++ ++K E P +C+ S
Sbjct: 1057 EFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDS---------------- 1100
Query: 613 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 672
++R++LDE Q+IKN T+ ++AC + RW LSGTPIQ
Sbjct: 1101 -------------------TFYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQ 1141
Query: 673 NAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGY---------KKLQAVLKTIM 723
N++D+LYS RFLR P+ + F I +N Y +K++ +L IM
Sbjct: 1142 NSMDELYSLIRFLRIPPYHKEQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIM 1201
Query: 724 LRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN 783
LRR+K +DG+P++ LPPK++ + + EE FY+ LE ++ K+ T + +
Sbjct: 1202 LRRSKADKIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAKKLLNNST-RGS 1260
Query: 784 YVNILLMLLRLRQACDHPLLV---------------KGFDSNSLLRSSVEMAKKLPQERQ 828
Y ++L +LLRLRQAC H LV K F+ + LR ++ + E Q
Sbjct: 1261 YSSVLTLLLRLRQACCHSELVVMGEKKAEGTKVANGKSFE-DDWLRLYYKIT-HMSGEAQ 1318
Query: 829 MYLLNCLEASLAICGICN---DPPEDAVVSICGHVFCNQCI 866
++ + + C C +P +V++ CGH+ C+ CI
Sbjct: 1319 AQVITSMNS--MTCFWCMEQLEPEAMSVLTGCGHLICDTCI 1357
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 1005 EKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
EK I+FSQ+T ++LE LK+ + Y + G+M+ R + +F PE ++++S+
Sbjct: 1462 EKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISM 1521
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
KA + GL + A HV+++D +WNP E+QA DR +RI QT+ V V +L +K++VEDRI
Sbjct: 1522 KAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISE 1581
Query: 1124 LQQKKREMVASAF 1136
LQ++K+EMV SA
Sbjct: 1582 LQKRKKEMVDSAM 1594
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 365 RLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQG 424
R +L+ Q S + EA P+ + V LL+HQR+ L W++Q E S+ GG+LADD G
Sbjct: 916 RALLENVKQSESIIDGEALTPED-MTVNLLKHQRLGLHWLLQVENSA--KKGGLLADDMG 972
Query: 425 LGKTISTIALILKER 439
LGKTI IAL+L R
Sbjct: 973 LGKTIQAIALMLANR 987
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3
SV=1
Length = 1151
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/529 (25%), Positives = 237/529 (44%), Gaps = 119/529 (22%)
Query: 405 VQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 464
+++ T + +GGIL+D+ GLGKTIS ++L+L RP T + E+ NL +D
Sbjct: 497 LERPTMNSFKNGGILSDEMGLGKTISALSLVLM-RPKDEHTTSQSLFHQESSNLSSDD-- 553
Query: 465 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRN 524
V+ +S+ + TL++ P S+L QW +E +
Sbjct: 554 -----------------VIEIKEPERSYAY---------KTTLIIVPMSLLTQWRDEF-D 586
Query: 525 KVTSKGSLSVLVYHGSSRTKDPCELAKFD----VVITTYSIVSMEVPKQPLGDKEDEEEK 580
KV + L+ +Y+G + + L K VV+TTY IV ++E K
Sbjct: 587 KVNNNAGLTCELYYGGNVSSLKSLLIKRKNPPTVVLTTYGIV------------QNEWTK 634
Query: 581 MKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDE 640
+ +G ++ + +S + + +FR++LDE
Sbjct: 635 LSKDGTNIRSLGRTSG-------------------------------IFSIEFFRIILDE 663
Query: 641 AQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 700
+I+N T ++A L +K RW L+GTPI N +DDLYS +FL+ +P++ + I
Sbjct: 664 GHTIRNKSTITSKAVLELSSKYRWILTGTPIINRLDDLYSLVKFLKLEPWSQIGYWKQFI 723
Query: 701 KVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTL-LDGEPIINLPPKVIMLKQVDFTDEERD 758
P +N + + + A+++ ++LRRTK DG P++ LPPK I+++++ + +++
Sbjct: 724 TNPFEERNFKQAFDVVNAIMEPVLLRRTKQMKDTDGNPLVQLPPKEIVIEKLQLSKKQKL 783
Query: 759 FYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD---------S 809
Y + + F+ +G + + Y IL+ +LRLRQ C L+ D +
Sbjct: 784 IYEEFLQRAEKTFRSGLQSGDLLKKYSTILVHILRLRQVCCDSNLIGTLDENDEDLSSGN 843
Query: 810 NSLLRSSVEMAKKLPQERQM-------------YLLNCLEASL--------AICGICNDP 848
N L+ SV++ +P + L+ +EA C IC
Sbjct: 844 NKLITESVDVKTLIPDTEEEEDEVPPFENDELDKLIESVEAKFIDSNQLIPVECSICTAE 903
Query: 849 P---EDAVVSICGHVFCNQCICE-----RLTADDNQCPTRNCKIRLSLS 889
P AVV+ C HVFC +C+ E + + +CP NC+ ++L+
Sbjct: 904 PIESSSAVVTECEHVFCKECLEEYGNFQKEKSLQQKCP--NCRRDINLN 950
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 98/161 (60%), Gaps = 9/161 (5%)
Query: 1003 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEV-- 1056
GE+ +VFSQ++ LD+LE+ L + + ++ + DG +S+ R ++DF
Sbjct: 992 AGEQVVVFSQFSSYLDILESQLNEVYSSNKLKVYKFDGRLSLKERTAVLEDFKVKDYAVQ 1051
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V+++SLKA +GLN+ A + ++D WW+P+ EDQAIDR HRIGQT V V+R + +
Sbjct: 1052 KVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSMEDQAIDRIHRIGQTNSVKVIRFVIDGS 1111
Query: 1117 VEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+E+++L +Q +KR + A DE ++ R ++++ LF
Sbjct: 1112 IEEKMLRIQDRKRTL-GEAMDTDEDERRKRR--IEEIQMLF 1149
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/528 (25%), Positives = 223/528 (42%), Gaps = 141/528 (26%)
Query: 414 CSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLV 473
GGILAD+ GLGKTIST+ALI N + + D++
Sbjct: 537 VKGGILADEMGLGKTISTLALI---------------------------NSVPI---DVM 566
Query: 474 KQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS 533
+E+ +E + TL++ P S+L QW +E +K + +
Sbjct: 567 FEENKE---------------LEDKTIYASKTTLIIVPMSLLSQWQKEF-DKANNNSNHK 610
Query: 534 VLVYHGSSRTKDPCEL---AKFD---VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGED 587
+Y+G S T D + K D V+ITTY V E
Sbjct: 611 CFIYYGDSATTDLSPVLCNKKKDIPIVMITTYGTVLNE---------------------- 648
Query: 588 LPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNH 647
+ S +R D KG K G L V +FR+VLDE +I+N
Sbjct: 649 ----FTRISNRR------DAKGFLPKIG------------LFSVKFFRIVLDEGHNIRNR 686
Query: 648 RTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 707
+ ++A + + + R+W L+GTP+ N +DDLYS +FL +P++ + + + + +P +
Sbjct: 687 TAKTSKAIYEILSNRKWVLTGTPVINRLDDLYSLVKFLELEPWSNFSYWKTFVTLPFEQR 746
Query: 708 PV-KGYKKLQAVLKTIMLRRTKGTLL-DGEPIINLPPKVIMLKQVDFTDEERDFYSQLEI 765
+ + ++++L+ I +RRTK +G+P++ LPPK +++++V F + E Y+ +
Sbjct: 747 KISQTLDVVKSILEPIFIRRTKNMKQSNGKPLVELPPKEVVIEEVKFNEVEEKLYNWFKA 806
Query: 766 NSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF------------------ 807
+ FK+ +G + + Y IL +LRLRQ C H LV
Sbjct: 807 RASQSFKDGIKSGDLFKKYSQILTHILRLRQVCCHVDLVGSANEMEQELVDPNTDLSEAN 866
Query: 808 ---DSNSLLRSSV----------EMAKKLPQERQMY--LLNCLEASLAICGICNDPP--- 849
DS S++ + + E K + R + L ++ + C IC P
Sbjct: 867 GESDSISMVNNVLDSYHADNNHDEKFKNNTEVRSVMFPLYEKIDLKESECSICTQSPIPL 926
Query: 850 EDAVVSICGHVFCNQCICERLTADDNQ-----CPTRNCKIRLSLSSVF 892
+ ++ CGH +C C+ E + CP NC+ +S +F
Sbjct: 927 GEMALTPCGHAYCLNCVLEHFDFQEKNSQKPLCP--NCREPISKYKIF 972
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 106/175 (60%), Gaps = 14/175 (8%)
Query: 994 KCSIDSIKL-----GGEKAIVFSQWTKMLDLLEASLK---DSSIQYRRLDGTMSVFARDK 1045
+C I+ +K+ E+ +VFSQ++ LD++E LK + + DG +++ R K
Sbjct: 1016 QCLINHLKILKEQSPNEQVVVFSQFSSYLDIIENELKIQISNDFVVYKFDGRLNMNERQK 1075
Query: 1046 AVKDFNTLP---EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQ 1102
+++F++ +V ++++SLKA +GLN+ A ++D WW+P+ EDQAIDR HRIGQ
Sbjct: 1076 ILENFSSQKHENKVMILLLSLKAGGVGLNLTTASRAFMMDPWWSPSVEDQAIDRLHRIGQ 1135
Query: 1103 TRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
V V R + +++E ++L +Q++K++ + A G +E ++ R ++++ LF
Sbjct: 1136 NSNVKVTRFIMADSIETKMLKIQERKKQ-IGEAVGAEEDERRKRR--IEEMQILF 1187
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 142/555 (25%), Positives = 228/555 (41%), Gaps = 110/555 (19%)
Query: 366 LILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGL 425
L ++ + + QP E + L R+Q+ L+WM+ +ET S DD G
Sbjct: 344 LYKRIEKEDVEQPETEVEG----FPLELRRYQKQGLTWMISRET---EVSEYFDNDDSGP 396
Query: 426 GKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN------GLDLVKQESDY 479
+ T ++ D VN L KQE +
Sbjct: 397 INPLWT-----------------------KVDFPGSDEKFYVNFSSGALTLKFPKQERSF 433
Query: 480 CRVVPN-----GSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 534
+ G + + V + R TLVV P S+L QW +E + LS
Sbjct: 434 SGGILADEMGLGKTISTLAMV--YRDRHVGCTLVVAPMSLLWQWEQE-----CERVGLST 486
Query: 535 LVYHGSSRTKDPCELAKF---DVVITTY-SIVSMEVPKQPLGDKEDEEEKMKIEGEDLPP 590
VYH D EL K +++IT+Y ++VS + LG D + + P
Sbjct: 487 YVYHEKGADIDLDELFKTYSPNILITSYHTLVSHYGQIKALGGGLDRNVISETSSHERPK 546
Query: 591 MYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQ 650
++ + R+VLDEA IKN T
Sbjct: 547 IFTKH-------------------------------------FHRIVLDEAHVIKNRNTV 569
Query: 651 VARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNP-V 709
A+AC LRA +W L+GTPI N ++DL+S +FL P+ + + + I +P + V
Sbjct: 570 SAKACCLLRATNKWALTGTPIHNRLEDLFSILKFLGAAPWNDFIYWRNFITLPFQEGKIV 629
Query: 710 KGYKKLQAVLKTIMLRRTKGT-LLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR 768
+Q +L+ I+LRRTK DG P++ LP K I +++V TD+ER YS + ++
Sbjct: 630 SALMTVQCILEPIVLRRTKNMKQADGSPLVVLPKKTINIEKVALTDQERVIYSYVLARAQ 689
Query: 769 DQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLV-------------KGFDSNSLLRS 815
++ A+ V +NY+NIL +LRLRQ+C P L+ + ++ S L+S
Sbjct: 690 TSLQKSEASEAVGRNYLNILTQILRLRQSCCDPALILRPEAEVPTDEQLQIEENESQLKS 749
Query: 816 SVEMAKKLPQ----ERQMYLLNCLEASLAI--CGICNDPPEDAVVSICGHVFCNQCICER 869
++ Q E ++ L+ A C IC + +S C H+ C C+ +
Sbjct: 750 MIQQYNDDTQTSACEYSSEIIAQLQDQSAPPECPICAEDVTKLAISKCLHMGCVDCLADN 809
Query: 870 LTADDNQCPTRNCKI 884
+ +++ T C I
Sbjct: 810 VRFQESKKQTPVCCI 824
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065
K++VFSQ+T LD+++ L+ IQ R DGT+S R +K F L + SV+++SLK
Sbjct: 876 KSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVLKAFG-LSKGSVLLISLKT 934
Query: 1066 ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125
+GLN+V A H ++D WW E QAIDR HR+GQT+ V V R V+N+VE+++L +Q
Sbjct: 935 GGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQ 994
Query: 1126 QKKREMVASAFGEDETGGQQTRL 1148
Q+K ++A G E + R+
Sbjct: 995 QQKM-VLAGTLGMSEQEQKAQRI 1016
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1
SV=2
Length = 1638
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 99/174 (56%), Gaps = 13/174 (7%)
Query: 965 SICCPGDSNDLHGG-------DTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKML 1017
++C P HGG D I+D + + +K G + +++SQ TKM+
Sbjct: 1132 ALCKP------HGGWSSIVVPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMI 1185
Query: 1018 DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH 1077
DLLE + +Y RLDG+ + AR V DF T ++ V ++S +A LG+N+ AA
Sbjct: 1186 DLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADT 1245
Query: 1078 VLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
V+ D WNPT + QA+DRAHR+GQT+ V+V RL K T+E+RIL ++K E+
Sbjct: 1246 VIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAREKSEI 1299
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
++ W +VLDEAQ+IK+ +Q + G + R LSGTPIQN++ +L++ F+
Sbjct: 660 RIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTL 719
Query: 690 FAVYKSFCSMIKVPISKNP-------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F + F I + K +L +LK MLRR K + + L
Sbjct: 720 FDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVEN-----ELSD 774
Query: 743 KVIMLKQVDFTDEERDFYSQLEINSRDQ----FKEYAAAGTVKQNYVNILLMLLRLRQAC 798
K+ ++ T ++ Y L+ R + + + + N++ ++++ R+ C
Sbjct: 775 KIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVC 834
Query: 799 DHPLLVKGFDSNS 811
+HP L + D+ S
Sbjct: 835 NHPELFERRDARS 847
>sp|P47264|Y018_MYCGE Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=MG018 PE=3
SV=3
Length = 1031
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 122/234 (52%), Gaps = 14/234 (5%)
Query: 908 QEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVT-NHSLRHSFNGSI 966
+E+P VE Y+ K E+ +S AK N ++ LRH I
Sbjct: 793 KELPKKIITDIYVELSEEHQKLYDKQKTDGLKEIKESDAKNALNILSLILKLRH-----I 847
Query: 967 CCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGE-KAIVFSQWTKMLDLLEASLK 1025
C ND+ N ++N K A +I L + K I+F+Q+ ++D + +LK
Sbjct: 848 CSLVKDNDV-------NDFEDNSKANAALNIIYEALENKRKVILFTQFLDVIDCFKQTLK 900
Query: 1026 DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1085
+ I + DG +V R+ ++ FN+ E VM+ SLKA +G+N+ AA V+ D+WW
Sbjct: 901 NQKIDHLVFDGRKTVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLTAAEVVIHFDVWW 960
Query: 1086 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1139
N E+QA DRAHRIGQ++ V V R+ KNT+E+R+ +Q +K+E+V ED
Sbjct: 961 NSAVENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTLVED 1014
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 636 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 695
VV+DEAQ IKN + V +A ++ L+GTPI+N + DL+S F F+ + K
Sbjct: 699 VVIDEAQGIKNENSTVTKAAKKIKGNFCLALTGTPIENRLLDLWSCFDFVLPNFLGNKKQ 758
Query: 696 FCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDE 755
F + KN + ++KL +LRRTK +L LP K+I V+ ++E
Sbjct: 759 FSDQFEKE--KND-ESFQKLMKKTSPFILRRTKNKVLK-----ELPKKIITDIYVELSEE 810
Query: 756 ERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSL 812
+ Y + + + + KE A +N +NIL ++L+LR C LVK D N
Sbjct: 811 HQKLYDKQKTDGLKEIKESDA-----KNALNILSLILKLRHICS---LVKDNDVNDF 859
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1
SV=1
Length = 1674
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 144/316 (45%), Gaps = 57/316 (18%)
Query: 505 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIV 562
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 708 ATLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVL 766
Query: 563 SMEV--PKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 620
E+ P + ED R+ QK+
Sbjct: 767 RSELNYVNIPHSNSED-----------------------------GRRLRNQKR------ 791
Query: 621 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 680
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 792 YMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFG 851
Query: 681 YFRFLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL +P+ V + ++ P KNP + L + + IM R K ++D I
Sbjct: 852 LVVFLGIEPYCVKHWWIRLLYHPYCKKNP----QHLYSFIAKIMWRSAKKDVIDQ---IQ 904
Query: 740 LPPKVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYA--AAGTVKQNYVNILLM 790
+PP+ + + F+ ER FY Q E+ +D + ++A + ++ +IL
Sbjct: 905 IPPQTEEMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYP 964
Query: 791 LLRLRQACDHPLLVKG 806
LLRLRQAC HP V+G
Sbjct: 965 LLRLRQACCHPQAVRG 980
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 6/154 (3%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1063
G KA+VFS W +LD++ +L D+++++ ++ + F + + F P ++++++ L
Sbjct: 1519 GAKALVFSTWQDVLDIISKALTDNNMEFTQI-SRIKTFQEN--LSAFKYDPHINILLLPL 1575
Query: 1064 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123
S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+E+R+ A
Sbjct: 1576 HTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQA 1635
Query: 1124 LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
+ + S+ G+ + + LTV L LF
Sbjct: 1636 MLKTAERSHTSSSGKH---SEASVLTVAGLADLF 1666
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 42/88 (47%)
Query: 391 VPLLR-HQRIALSWMVQKET--------SSLH---------------------------- 413
+P+LR +QR A++WM+Q+E +SLH
Sbjct: 296 IPVLRPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTPDGLKLYYNPYTGCIIRDFP 355
Query: 414 -----CSGGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 356 HAGPQLLGGILADEMGLGKTVEVLALIL 383
>sp|Q59KI4|INO80_CANAL Putative DNA helicase INO80 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=INO80 PE=3 SV=1
Length = 1387
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 88/138 (63%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K GG + +++ Q T+M+ + E L S +Y RLDG+ ++ +R + V+ + T PE+ +
Sbjct: 1248 LKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMVQAWQTNPEIFIF 1307
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
++S +A LGLN+ +A V+ D WNPT + QA+DRAHRIGQT+ V V RL +NT+E
Sbjct: 1308 MLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQ 1367
Query: 1120 RILALQQKKREMVASAFG 1137
+IL ++K E+ G
Sbjct: 1368 KILERAKEKEEIQKLVVG 1385
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 29/265 (10%)
Query: 566 VPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSS-DRKGSK-QKKGPDGLLLD- 622
P L + + E K E + LP Y ++K RK DRK + K P +L+
Sbjct: 728 TPASTLHNWQQEITKFVPEFKVLP--YWGNAKDRKILRKFWDRKSLRYDKDSPFHVLVTS 785
Query: 623 ---IVA--GPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDD 677
IVA K+ W ++LDEAQ+IK+ + ++ L + R L+GTPIQN++ +
Sbjct: 786 YQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQE 845
Query: 678 LYSYFRFLRYDPFAVYKSFCSMIKVPISKNPV-------KGYKKLQAVLKTIMLRRTKGT 730
L++ F+ F + F I + + ++L +LK MLRR K
Sbjct: 846 LWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDEQQLRRLHMILKPFMLRRIKKN 905
Query: 731 LLDGEPIINLPPKVIMLKQVDFTDEERDFY----SQLEINSRDQFKEYAAAGTVKQNYVN 786
+ L KV + D T ++ Y SQ+ ++ D + + + + + N
Sbjct: 906 VQS-----ELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSSLAN 960
Query: 787 ILLMLLRLRQACDHPLLVKGFDSNS 811
++++ R+ C+HP L + D NS
Sbjct: 961 ---LVMQFRKVCNHPDLFERADVNS 982
>sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020
/ DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1
Length = 1708
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF PE+
Sbjct: 1427 LRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEI 1486
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL + T
Sbjct: 1487 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGT 1546
Query: 1117 VEDRI--LALQQKKREMVASAFG 1137
+E+RI ALQ+++ + V + G
Sbjct: 1547 IEERIRKRALQKEEVQRVVISGG 1569
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
KV W ++LDEAQ+IK+ ++ + G + R L+GTPIQN + +L++ F+
Sbjct: 957 FQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMP 1016
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K +L +LK MLRR K + L
Sbjct: 1017 TLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQ-----EL 1071
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
KV D T +R +Y+ L S E AA G + + ++ ++++ R+ C+
Sbjct: 1072 GDKVEKDVFCDLTYRQRAYYANLRNRVSIMDLIEKAAVGD-EADSTTLMNLVMQFRKVCN 1130
Query: 800 HPLLVKGFDSNS 811
HP L + ++ S
Sbjct: 1131 HPDLFERAETKS 1142
Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 15/63 (23%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432
ISQP +L L +Q L+W+V +L+ G GILAD+ GLGKTI +I
Sbjct: 823 ISQPK--------MLTAKLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSI 869
Query: 433 ALI 435
+++
Sbjct: 870 SVM 872
>sp|Q4WTV7|INO80_ASPFU Putative DNA helicase ino80 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ino80 PE=3
SV=1
Length = 1708
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF PE+
Sbjct: 1427 LRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEI 1486
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL + T
Sbjct: 1487 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGT 1546
Query: 1117 VEDRI--LALQQKKREMVASAFG 1137
+E+RI ALQ+++ + V + G
Sbjct: 1547 IEERIRKRALQKEEVQRVVISGG 1569
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
KV W ++LDEAQ+IK+ ++ + G + R L+GTPIQN + +L++ F+
Sbjct: 957 FQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMP 1016
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K +L +LK MLRR K + L
Sbjct: 1017 TLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQ-----EL 1071
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
KV D T +R +Y+ L S E AA G + + ++ ++++ R+ C+
Sbjct: 1072 GDKVEKDVFCDLTYRQRAYYTNLRNRVSIMDLIEKAAVGD-EADSTTLMNLVMQFRKVCN 1130
Query: 800 HPLLVKGFDSNS 811
HP L + ++ S
Sbjct: 1131 HPDLFERAETKS 1142
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 15/63 (23%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432
ISQP +L L +Q L+W+V +L+ G GILAD+ GLGKTI +I
Sbjct: 823 ISQPK--------MLTAKLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSI 869
Query: 433 ALI 435
+++
Sbjct: 870 SVM 872
>sp|A2R9H9|INO80_ASPNC Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 /
FGSC A1513) GN=ino80 PE=3 SV=1
Length = 1697
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF PE+
Sbjct: 1415 LRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEI 1474
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL + T
Sbjct: 1475 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGT 1534
Query: 1117 VEDRI--LALQQKKREMV 1132
+E+RI ALQ+++ + V
Sbjct: 1535 IEERIRKRALQKEEVQRV 1552
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
KV W ++LDEAQ+IK+ ++ + G + R L+GTPIQN + +L++ F+
Sbjct: 947 FQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMP 1006
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K +L +LK MLRR K + L
Sbjct: 1007 TLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQ-----EL 1061
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
KV D T +R +Y+ L S E AA G + + ++ ++++ R+ C+
Sbjct: 1062 GDKVEKDIFCDLTYRQRAYYTNLRNRVSIMDLIEKAAVGD-EADSTTLMNLVMQFRKVCN 1120
Query: 800 HPLLVKGFDSNS 811
HP L + ++ S
Sbjct: 1121 HPDLFERAETKS 1132
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 15/63 (23%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432
ISQPN +L L +Q L+W+V +L+ G GILAD+ GLGKTI +I
Sbjct: 813 ISQPN--------MLTAKLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSI 859
Query: 433 ALI 435
+++
Sbjct: 860 SVM 862
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1
SV=2
Length = 1683
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 144/316 (45%), Gaps = 57/316 (18%)
Query: 505 GTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIV 562
TL++ P+S+ QW +E+ V S SL VLVY G + P LA+ D+VI TY ++
Sbjct: 717 ATLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVL 775
Query: 563 SMEVPKQ--PLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 620
E+ P + ED R+ QK+
Sbjct: 776 RSELNYVDIPHSNSED-----------------------------GRRLRNQKR------ 800
Query: 621 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 680
+ PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+
Sbjct: 801 YMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFG 860
Query: 681 YFRFLRYDPFAVYKSFCSMIKVPI-SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
FL +P+ V + ++ P KNP + L + + I+ R K ++D I
Sbjct: 861 LVVFLGIEPYCVKHWWVRLLYRPYCKKNP----QHLYSFIAKILWRSAKKDVIDQ---IQ 913
Query: 740 LPPKVIMLKQVDFTDEERDFYS-QLEINSRD------QFKEYA--AAGTVKQNYVNILLM 790
+PP+ + + F+ ER FY Q E+ +D + ++A + ++ +IL
Sbjct: 914 IPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYP 973
Query: 791 LLRLRQACDHPLLVKG 806
LLRLRQAC HP V+G
Sbjct: 974 LLRLRQACCHPQAVRG 989
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 20/161 (12%)
Query: 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQY------RRLDGTMSVFARDKAVKDFNTLPEVS 1057
G KA+VFS W +LD++ +L D+++++ + +S F RD P+++
Sbjct: 1528 GAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSAFKRD---------PQIN 1578
Query: 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117
++++ L S GL ++ A HVLL++ NP E QAI R HRIGQT+P V R +K T+
Sbjct: 1579 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1638
Query: 1118 EDRILA-LQQKKREMVASAFGEDETGGQQTRLTVDDLNYLF 1157
E+R+ A L+ +R S+ E + LTV DL LF
Sbjct: 1639 EERMQAMLKTAERSHTNSSAKHSEA----SVLTVADLADLF 1675
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 42/88 (47%)
Query: 391 VPLLR-HQRIALSWMVQKE--------TSSLH---------------------------- 413
+P+LR +QR A++WM+Q+E S+LH
Sbjct: 301 IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
Query: 414 -----CSGGILADDQGLGKTISTIALIL 436
GGILAD+ GLGKT+ +ALIL
Sbjct: 361 NSGPQLLGGILADEMGLGKTVEVLALIL 388
>sp|A7EQA8|INO80_SCLS1 Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC
18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1
Length = 1707
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF T PE+
Sbjct: 1431 LTKLKEGGHRVLLYFQMTRMIDLMEEYLTYRNYKYLRLDGSTKLEDRRDTVHDFQTRPEI 1490
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
+ ++S +A LG+N+ +A V+ D WNPT + QA+DRAHR+GQTR V+V R+ + T
Sbjct: 1491 FIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRMITRGT 1550
Query: 1117 VEDRI--LALQQKKREMVASAFG 1137
+E+RI ALQ+++ + V G
Sbjct: 1551 IEERIRKRALQKEEVQKVVMTGG 1573
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
K+ W ++LDEAQ+IK+ ++ ++ G + R L+GTPIQN + +L++ F+
Sbjct: 965 FQKMKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMP 1024
Query: 688 DPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K+L +LK MLRR K + L
Sbjct: 1025 SLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQK-----EL 1079
Query: 741 PPKVIMLKQVDFTDEERDFYSQL--EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQAC 798
K+ D T +R +YS L +I+ D E A G + ++ ++++ R+ C
Sbjct: 1080 GDKIEEDIFCDLTYRQRAYYSNLRNQISIMDLI-EKATIGD-DNDTGTLMNLVMQFRKVC 1137
Query: 799 DHPLLVKGFDSNSLL 813
+HP L + ++ S L
Sbjct: 1138 NHPDLFERAETTSPL 1152
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTIALI 435
+L L +Q L+W+V +L+ G GILAD+ GLGKT+ +I+++
Sbjct: 836 MLQAQLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTVQSISVM 880
>sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 /
FGSC A1156) GN=ino80 PE=3 SV=1
Length = 1690
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF PE+
Sbjct: 1408 LRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEI 1467
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL + T
Sbjct: 1468 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGT 1527
Query: 1117 VEDRI--LALQQKKREMVASAFG 1137
+E+RI ALQ+++ + V G
Sbjct: 1528 IEERIRKRALQKEEVQRVVITGG 1550
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 22/201 (10%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
KV W ++LDEAQ+IK+ ++ + G + R L+GTPIQN + +L++ F+
Sbjct: 942 FQKVKWQYMILDEAQAIKSSQSSRWKNLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMP 1001
Query: 688 DPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K+L +LK MLRR K + L
Sbjct: 1002 TLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQQ-----EL 1056
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEINSRDQFK-----EYAAAGTVKQNYVNILLMLLRLR 795
KV D T +R +Y+ L RD+ E AA G + + ++ ++++ R
Sbjct: 1057 GDKVEKDVFCDLTYRQRAYYTGL----RDRVSIMDLIEKAAVGD-EADSTTLMNLVMQFR 1111
Query: 796 QACDHPLLVKGFDSNSLLRSS 816
+ C+HP L + ++ S L ++
Sbjct: 1112 KVCNHPDLFERAETKSPLTTA 1132
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 15/63 (23%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432
ISQP+ +L L +Q L+W+V +L+ G GILAD+ GLGKTI +I
Sbjct: 808 ISQPS--------MLTAKLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSI 854
Query: 433 ALI 435
+++
Sbjct: 855 SVM 857
>sp|Q2UTQ9|INO80_ASPOR Putative DNA helicase ino80 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=ino80 PE=3 SV=1
Length = 1444
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF PE+
Sbjct: 1225 LRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEI 1284
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL + T
Sbjct: 1285 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGT 1344
Query: 1117 VEDRI--LALQQKKREMVASAFG 1137
+E+RI ALQ+++ + V + G
Sbjct: 1345 IEERIRKRALQKEEVQRVVISGG 1367
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 620 LLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679
L+ + A KV W ++LDEAQ+IK+ ++ + G + R L+GTPIQN + +L+
Sbjct: 749 LVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKNLLGFSCRNRLLLTGTPIQNNMQELW 808
Query: 680 SYFRFLRYDPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLL 732
+ F+ F + F I + K+L +LK MLRR K +
Sbjct: 809 ALLHFIMPTLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQ 868
Query: 733 DGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLML 791
L KV D T +R +Y+ L S E AA G + + ++ ++
Sbjct: 869 Q-----ELGDKVEKDVFCDLTYRQRAYYTNLRNRVSIMDLIEKAAVGD-EADSTTLMNLV 922
Query: 792 LRLRQACDHPLLVKGFDSNS 811
++ R+ C+HP L + ++ S
Sbjct: 923 MQFRKVCNHPDLFERAETKS 942
Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 15/63 (23%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432
ISQP +L L +Q L+W+V +L+ G GILAD+ GLGKTI +I
Sbjct: 623 ISQPT--------MLTAKLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSI 669
Query: 433 ALI 435
+++
Sbjct: 670 SVM 672
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1100 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1159
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF T ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1160 RDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1219
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1220 KQVTVYRLICKGTIEERILQRAKEKSEI 1247
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 24/222 (10%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 643 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 702
Query: 688 DPFAVYKSFCSMI----------KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPI 737
F ++ F K I +N + +L +LK MLRR K + +
Sbjct: 703 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL---SRLHMILKPFMLRRIKKDVEN---- 755
Query: 738 INLPPKVIMLKQVDFTDEERDFYSQL--EINSRDQFKEYAAAGTVKQNYVNILL-MLLRL 794
L K+ +L T ++ Y L +I+ D + + QN + L+ ++++
Sbjct: 756 -ELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQF 814
Query: 795 RQACDHPLLVKGFDSNSLLRSSV---EMAKKLPQERQMYLLN 833
R+ C+HP L + ++ S S+ E++K + + Q+ + N
Sbjct: 815 RKVCNHPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFN 856
>sp|Q5BAZ5|INO80_EMENI Putative DNA helicase ino80 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ino80 PE=3
SV=1
Length = 1612
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF P++
Sbjct: 1330 LRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDI 1389
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL ++T
Sbjct: 1390 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRST 1449
Query: 1117 VEDRI--LALQQKKREMVASAFG 1137
+E+RI ALQ+++ + V + G
Sbjct: 1450 IEERIRKRALQKEEVQRVVISGG 1472
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
KV W ++LDEAQ+IK+ ++ ++ G + R L+GTPIQN + +L++ F+
Sbjct: 922 FQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMP 981
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K +L +LK MLRR K + L
Sbjct: 982 TLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQ-----EL 1036
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
KV D T +R Y+ L S E AA G + + ++ ++++ R+ C+
Sbjct: 1037 GDKVEKDVFCDLTYRQRALYTNLRNRVSIMDLIEKAAVGD-ETDSTTLMNLVMQFRKVCN 1095
Query: 800 HPLLVKGFDSNS 811
HP L + ++ S
Sbjct: 1096 HPDLFERAETKS 1107
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 15/63 (23%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432
ISQP +L L +Q L+W+V +L+ G GILAD+ GLGKTI +I
Sbjct: 788 ISQPT--------MLTAKLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSI 834
Query: 433 ALI 435
+++
Sbjct: 835 SVM 837
>sp|A1C9W6|INO80_ASPCL Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007
/ CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80
PE=3 SV=1
Length = 1707
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%), Gaps = 2/140 (1%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF P++ V
Sbjct: 1431 LKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPDIFVF 1490
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQTR V+V RL + T+E+
Sbjct: 1491 LLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEE 1550
Query: 1120 RI--LALQQKKREMVASAFG 1137
RI ALQ+++ + V + G
Sbjct: 1551 RIRKRALQKEEVQRVVISGG 1570
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
KV W ++LDEAQ+IK+ ++ + G + R L+GTPIQN + +L++ F+
Sbjct: 959 FQKVKWQYMILDEAQAIKSSQSSRWKNLLGFSCRNRLLLTGTPIQNNMQELWALLHFIMP 1018
Query: 688 DPFAVYKSFCSMIKVPISKNPVKGYK-------KLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K +L +LK MLRR K + L
Sbjct: 1019 TLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQ-----EL 1073
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
KV D T +R +Y+ L S E AA G + + ++ ++++ R+ C+
Sbjct: 1074 GDKVEKDVFCDLTYRQRAYYTNLRNRVSIMDLIEKAAVGD-EADSTTLMNLVMQFRKVCN 1132
Query: 800 HPLLVKGFDSNS 811
HP L + ++ S
Sbjct: 1133 HPDLFERAETKS 1144
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 15/63 (23%)
Query: 375 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432
ISQPN +L L +Q L+W+V +L+ G GILAD+ GLGKTI +I
Sbjct: 825 ISQPN--------MLTAKLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSI 871
Query: 433 ALI 435
+++
Sbjct: 872 SVM 874
>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS)
GN=INO80 PE=3 SV=1
Length = 1662
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 997 IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV 1056
+ +K GG + +++ Q T+M+DL+E L + +Y RLDG+ + R V DF PE+
Sbjct: 1389 LRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVSDFQQRPEI 1448
Query: 1057 SVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116
V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT+ V+V RL + T
Sbjct: 1449 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGT 1508
Query: 1117 VEDRI--LALQQKKREMVASAFG 1137
+E+RI ALQ+++ + V + G
Sbjct: 1509 IEERIRKRALQKEEVQRVVISGG 1531
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 14/192 (7%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
K+ W ++LDEAQ+IK+ ++ ++ G+ + R L+GTPIQN + +L++ F+
Sbjct: 920 FQKIKWQYMILDEAQAIKSSQSSRWKSLLGMHCRNRLLLTGTPIQNNMQELWALLHFIMP 979
Query: 688 DPFAVYKSFCSMIKVPISKNPVKG-------YKKLQAVLKTIMLRRTKGTLLDGEPIINL 740
F + F I + K+L +LK MLRR K + L
Sbjct: 980 TLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRIKKHVQK-----EL 1034
Query: 741 PPKVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 799
KV D T +R +Y+ L S E AA G + ++ ++++ R+ C+
Sbjct: 1035 GDKVEKDVFCDLTYRQRAYYTSLRNRVSIMDLIEKAAIGD-DTDSTTLMNLVMQFRKVCN 1093
Query: 800 HPLLVKGFDSNS 811
HP L + ++ S
Sbjct: 1094 HPDLFERAETTS 1105
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 379 NAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTIALI 435
+ E S P +L L +Q L+W+V +L+ G GILAD+ GLGKT+ +I+++
Sbjct: 783 DVEVSQPK-MLTCQLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTVQSISVM 835
>sp|Q4PGL2|INO80_USTMA Putative DNA helicase INO80 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=INO80 PE=3 SV=1
Length = 1910
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K G + +++ Q T+M+DL+E L +Y RLDG + R V D+ T PE+ +
Sbjct: 1591 LKANGHRVLIYFQMTRMIDLMEEYLIYRQYKYLRLDGASKISDRRDMVTDWQTKPELFIF 1650
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
++S +A LG+N+ AA V+ D WNP+ + QA+DRAHR+GQT+ V+V RL K T+++
Sbjct: 1651 LLSTRAGGLGINLTAADTVIFYDHDWNPSNDSQAMDRAHRLGQTKQVTVYRLITKGTIDE 1710
Query: 1120 RILALQQKKRE---MVASAFGEDETG 1142
RI+ L + K+E +V ETG
Sbjct: 1711 RIVRLARNKKEVQDIVVGTKAYSETG 1736
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%)
Query: 630 KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 689
+V W ++LDEAQ+IK+ + + G + R L+GTP+QN++ +L++ F+
Sbjct: 1124 RVKWQYMILDEAQAIKSSSSIRWKTLLGFNCRNRLLLTGTPVQNSMQELWALLHFIMPSL 1183
Query: 690 FAVYKSFCSMIKVPI-SKNPVKG------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPP 742
F + F I S KG ++L +LK MLRR K + + L
Sbjct: 1184 FDSHDEFSEWFSKDIESHAEQKGTLNEHQLRRLHMILKPFMLRRIKKNVQN-----ELGD 1238
Query: 743 KVIMLKQVDFTDEERDFYSQLEIN-SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHP 801
K+ + D + ++ Y L N S + + A + + +++ ++++ R+ C+HP
Sbjct: 1239 KIEIDVFCDLSARQKMLYRGLRANISVAELMDRATSND-EAGLKSLMNLVMQFRKVCNHP 1297
Query: 802 LLVKGFD 808
L + D
Sbjct: 1298 ELFERAD 1304
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
Length = 1556
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 89/148 (60%)
Query: 984 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFAR 1043
I+D + A + +K G + +++SQ T+M+DLLE + Y RLDG+ + R
Sbjct: 1097 ITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISER 1156
Query: 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103
V DF ++ V ++S +A LG+N+ AA V+ D WNPT + QA+DRAHR+GQT
Sbjct: 1157 RDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQT 1216
Query: 1104 RPVSVLRLTVKNTVEDRILALQQKKREM 1131
+ V+V RL K T+E+RIL ++K E+
Sbjct: 1217 KQVTVYRLICKGTIEERILQRAKEKSEI 1244
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 21/191 (10%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
+V W +VLDEAQ++K+ + + + + R L+GTPIQN + +L++ F+
Sbjct: 641 FQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 700
Query: 688 DPFAVYKSFCSMI----------KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPI 737
F ++ F K I +N + +L +LK MLRR K + +
Sbjct: 701 TLFDSHEEFNEWFSKDIESHAENKSAIDENQL---SRLHMILKPFMLRRIKKDVEN---- 753
Query: 738 INLPPKVIMLKQVDFTDEERDFYSQL--EINSRDQFKEYAAAGTVKQNYVNILL-MLLRL 794
L K+ +L T ++ Y L +I+ D + + QN + L+ ++++
Sbjct: 754 -ELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQF 812
Query: 795 RQACDHPLLVK 805
R+ C+HP L +
Sbjct: 813 RKVCNHPELFE 823
>sp|P41447|GTA_NPVAC Probable global transactivator OS=Autographa californica nuclear
polyhedrosis virus GN=GTA PE=3 SV=1
Length = 506
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 167/432 (38%), Gaps = 142/432 (32%)
Query: 378 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437
PN E P+ LL HQ+ + WM+ +E + +GG+LADD GLGKT
Sbjct: 21 PNFEHQTPN------LLAHQKKGIQWMINREKNG-RPNGGVLADDMGLGKT--------- 64
Query: 438 ERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQ 497
L L L ++N +Q+
Sbjct: 65 ---------------LSVLMLIAKNNSLQL------------------------------ 79
Query: 498 AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVIT 557
TL+VCP S++ W E NK + ++L Y+ S D + + +V+T
Sbjct: 80 -------KTLIVCPLSLINHWVTE--NK-KHDLNFNILKYYKSL---DADTVEHYHIVVT 126
Query: 558 TYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 617
TY ++ K KQ K
Sbjct: 127 TYDVLLAHF-----------------------------------------KLIKQNK--- 142
Query: 618 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDD 677
L W RVVLDEA IKN +T V A L A RWC++GTPI N D
Sbjct: 143 -------QSSLFSTRWHRVVLDEAHIIKNCKTGVHNAACALTATNRWCITGTPIHNKHWD 195
Query: 678 LYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPI 737
+YS FL+ PF + + + K S N +K +++K I+L+R K E
Sbjct: 196 MYSMINFLQCRPFNNPRVWKMLNKNNDSTNRIK------SIIKKIVLKRDK-----SEIS 244
Query: 738 INLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVK------QNYVNILLML 791
N+P + V+F +EE+ Y +L+ S + + + AA + Q ++L ++
Sbjct: 245 SNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYVKAVAARENENALSRLQQMQHVLWLI 304
Query: 792 LRLRQACDHPLL 803
L+LRQ C HP L
Sbjct: 305 LKLRQICCHPYL 316
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 21/204 (10%)
Query: 966 ICC-PGDSNDLHGGDTLD-NISDENEKIAAKCSI------DSIKLGGEKAIVFSQWTKML 1017
ICC P + +HG + L+ N + + +++KC D + +K I+ SQW + L
Sbjct: 310 ICCHPYLA--MHGKNILETNDCFKMDYMSSKCKRVLDLVDDILNTSNDKIILVSQWVEYL 367
Query: 1018 DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVS--VMIMSLKAASLGLNMVAA 1075
+ E K +I G + V R A FN ++++S+K +GLN++
Sbjct: 368 KIFENFFKQKNIATLMYTGQLKVEDRILAETTFNDAANTQHRILLLSIKCGGVGLNLIGG 427
Query: 1076 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRL--TVKNTVEDRILALQQKKREMVA 1133
H+++L+ WNP E QA DR R+GQT+ V ++ N++E I Q KK V
Sbjct: 428 NHIVMLEPHWNPQIELQAQDRISRMGQTKNTYVYKMLNVEDNSIEKYIKQRQDKKIAFVN 487
Query: 1134 SAFGEDETGGQQTRLTVDDLNYLF 1157
+ F E T L +D+ F
Sbjct: 488 TVFEE-------TLLNYEDIKKFF 504
>sp|A4R227|INO80_MAGO7 Putative DNA helicase INO80 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=INO80 PE=3 SV=1
Length = 1944
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 83/132 (62%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K GG + +++ Q T+M+DL+E L + +Y RLDG+ R V DF T P + V
Sbjct: 1671 LKAGGHRVLLYFQMTRMIDLMEEYLTYRNWKYCRLDGSTKFEDRRDTVHDFQTNPSIFVF 1730
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
++S +A LG+N+ +A V+ D WNPT + QA+DRAHR+GQTR V+V RL + T+E+
Sbjct: 1731 LLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIEE 1790
Query: 1120 RILALQQKKREM 1131
RI +K E+
Sbjct: 1791 RIRKRAMQKEEV 1802
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 29/243 (11%)
Query: 590 PMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL----LDIVAGPLA---KVGWFRVVLDEAQ 642
P + S+S ++ DRK S K+ + +V +A K+ W ++LDEAQ
Sbjct: 1157 PYWGSASDRKILRKFWDRKHSTYKRDAQFHVAITSYQMVVSDVAYFQKMKWQYMILDEAQ 1216
Query: 643 SIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKV 702
+IK+ ++ + + R L+GTPIQN + +L++ F+ F ++ F
Sbjct: 1217 AIKSSQSSRWKCLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHEEFSDWFSK 1276
Query: 703 PI-------SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDE 755
I SK K+L +LK MLRR K + L K+ + D T
Sbjct: 1277 DIESHAQSNSKLNEDQLKRLHMILKPFMLRRVKKHVQK-----ELGDKIELDVYCDLTYR 1331
Query: 756 ERDFYSQLEINSRDQFK-----EYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSN 810
+R +Y+ L R+Q E A G + ++ ++++ R+ C+HP L + D++
Sbjct: 1332 QRAYYANL----RNQISIMDLIEKATLGD-DNDSGTLMNLVMQFRKVCNHPDLFERADTS 1386
Query: 811 SLL 813
S L
Sbjct: 1387 SPL 1389
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 388 VLAVPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTIALI 435
+L L +Q L+W+V +L+ G GILAD+ GLGKTI +I+++
Sbjct: 1073 LLTATLKEYQLKGLNWLV-----NLYEQGINGILADEMGLGKTIQSISVM 1117
>sp|G5EDG2|SMRCD_CAEEL SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 homolog
OS=Caenorhabditis elegans GN=M03C11.8 PE=3 SV=1
Length = 989
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 93/152 (61%), Gaps = 8/152 (5%)
Query: 988 NEKIA---AKCS-----IDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS 1039
NE++A KC + I+ G+K ++FSQ+T MLD+LE L Y+RLDG
Sbjct: 745 NEQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTP 804
Query: 1040 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1099
V R + + +FN ++ V ++S +A LG+N+ +A H+++ D+ +NP + QA DR HR
Sbjct: 805 VLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHR 864
Query: 1100 IGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131
+GQ +PV V RL K TVE +LAL +KK ++
Sbjct: 865 MGQEKPVHVTRLVSKGTVEVGMLALAKKKLQL 896
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 636 VVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY-- 693
V+ DE +KN ++ R ++ K++ L+GTP+QN + +L S F+ F Y
Sbjct: 522 VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCE 581
Query: 694 ------KSFCSMIKVPISKNPV----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPK 743
+ F + +KN ++ +A+L+ +LRR K +L +LP K
Sbjct: 582 DITHLLQHFKQLGPALDTKNKALYQQDRIEEAKAILQPYILRRLKNQVLG-----SLPSK 636
Query: 744 VIMLKQVDFTDEERDFYSQLEINSRDQFKEYA-AAGTVKQNYVNILLMLLRLRQACDHPL 802
+ +V+ ++ Y + + + Q +E + G+ L+RLRQA +HPL
Sbjct: 637 SEQIIEVEMKKPQKQLYDNI-VEALQQSEESGDSYGS-----------LMRLRQAANHPL 684
Query: 803 L 803
L
Sbjct: 685 L 685
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 386 DGVLAVPLLR-------HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435
+G L +PLL+ +Q I + W++ L+ IL D+ GLGKTI +A +
Sbjct: 380 EGPLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNA---ILGDEMGLGKTIQIVAFL 433
>sp|P0CO16|INO80_CRYNJ Putative DNA helicase INO80 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=INO80 PE=3 SV=1
Length = 1765
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%)
Query: 1000 IKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVM 1059
+K GG + +++ Q TKM+DL+E L +Y RLDG+ + R V + T P++ V
Sbjct: 1465 LKAGGHRVLLYFQMTKMMDLIEEYLIFRQYKYLRLDGSSPIAERRDMVTSWQTNPDIFVF 1524
Query: 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119
+S +A LG+N+ AA V+ D WNP+++ QA+DRAHR+GQT+ V+V RL + T+E+
Sbjct: 1525 CLSTRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVGQTKQVTVYRLVARGTIEE 1584
Query: 1120 RILALQQKKREM 1131
RIL + + K+++
Sbjct: 1585 RILQMARGKKDI 1596
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687
L + W ++LDEAQ+IK+ + ++ L + R L+GTPIQN++ +L++ F+
Sbjct: 995 LQGMKWQYMILDEAQAIKSSSSARWKSLLSLHCRNRLLLTGTPIQNSMHELWALLHFIMP 1054
Query: 688 DPFAVYKSFCSMIKVPI--SKNPVKG------YKKLQAVLKTIMLRRTKGTLLDGEPIIN 739
F ++ F I S V G K+L +LK MLRR K +
Sbjct: 1055 QLFDSHEEFAEWFSKDIESSSGGVTGNLKPEQLKRLHMILKPFMLRRVKKHVQK-----E 1109
Query: 740 LPPKVIMLKQVDFTDEERDFYSQLE----INSRDQFKEYAAAGTVKQNYVNILLMLLRLR 795
L K+ + VD + +R+ Y L I E +N +++ ++++ R
Sbjct: 1110 LGDKIEIDLLVDLSQRQREIYKALRQRVSITDLLATAENNTDNGNPKNMRSLVNLVMQFR 1169
Query: 796 QACDHPLLVKGFD 808
+ C+HP L + D
Sbjct: 1170 KVCNHPDLFERAD 1182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,867,696
Number of Sequences: 539616
Number of extensions: 18492227
Number of successful extensions: 48063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 46237
Number of HSP's gapped (non-prelim): 1620
length of query: 1159
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1030
effective length of database: 121,958,995
effective search space: 125617764850
effective search space used: 125617764850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)