Query 001094
Match_columns 1159
No_of_seqs 341 out of 2282
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 15:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 3E-107 7E-112 898.6 35.8 576 382-1158 175-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 4.3E-90 9.4E-95 791.5 40.3 548 380-1159 313-901 (901)
3 KOG0385 Chromatin remodeling c 100.0 6.6E-90 1.4E-94 796.7 40.4 459 384-1139 159-623 (971)
4 KOG0387 Transcription-coupled 100.0 1.9E-87 4.1E-92 781.1 40.5 477 381-1159 195-699 (923)
5 KOG0384 Chromodomain-helicase 100.0 7.5E-88 1.6E-92 812.3 33.9 600 236-1157 242-856 (1373)
6 KOG0392 SNF2 family DNA-depend 100.0 4.8E-85 1.1E-89 782.7 38.8 529 362-1158 948-1495(1549)
7 KOG0389 SNF2 family DNA-depend 100.0 1.2E-84 2.6E-89 756.3 34.0 497 391-1140 398-913 (941)
8 KOG1001 Helicase-like transcri 100.0 7E-85 1.5E-89 790.9 30.0 563 368-1138 110-673 (674)
9 PLN03142 Probable chromatin-re 100.0 3.8E-82 8.3E-87 794.1 47.9 472 387-1158 164-641 (1033)
10 KOG0391 SNF2 family DNA-depend 100.0 5.1E-81 1.1E-85 737.2 33.7 576 386-1159 609-1429(1958)
11 KOG0388 SNF2 family DNA-depend 100.0 2.5E-79 5.4E-84 697.8 30.8 546 387-1140 562-1179(1185)
12 KOG0390 DNA repair protein, SN 100.0 5.1E-70 1.1E-74 655.4 39.9 493 386-1158 232-748 (776)
13 KOG0386 Chromatin remodeling c 100.0 7.6E-72 1.6E-76 662.7 19.9 460 383-1137 385-860 (1157)
14 KOG1015 Transcription regulato 100.0 1.5E-64 3.3E-69 589.9 35.0 596 389-1158 665-1317(1567)
15 COG0553 HepA Superfamily II DN 100.0 2.4E-63 5.3E-68 643.7 36.1 495 387-1158 333-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 1.2E-57 2.6E-62 523.0 25.4 581 389-1158 251-889 (1387)
17 KOG1000 Chromatin remodeling p 100.0 2.3E-55 5.1E-60 488.6 32.0 419 389-1135 195-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 3.2E-53 7E-58 532.1 35.6 420 389-1137 149-627 (956)
19 KOG0298 DEAD box-containing he 100.0 1E-51 2.3E-56 501.7 17.6 258 502-804 419-691 (1394)
20 PF00176 SNF2_N: SNF2 family N 100.0 7E-44 1.5E-48 404.5 16.2 291 396-804 1-299 (299)
21 KOG0383 Predicted helicase [Ge 100.0 8.4E-40 1.8E-44 391.6 9.6 378 391-1069 294-696 (696)
22 TIGR00603 rad25 DNA repair hel 100.0 6.2E-35 1.3E-39 356.1 35.2 355 390-1123 253-615 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 2.5E-30 5.5E-35 330.8 40.6 125 1003-1132 364-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 5.1E-23 1.1E-27 234.4 34.8 464 391-1132 14-498 (542)
25 PHA02558 uvsW UvsW helicase; P 99.9 7.2E-23 1.6E-27 248.7 34.5 113 1003-1116 343-456 (501)
26 COG1061 SSL2 DNA or RNA helica 99.9 1.6E-22 3.4E-27 241.3 32.9 122 1003-1127 282-406 (442)
27 KOG1123 RNA polymerase II tran 99.8 3.5E-19 7.6E-24 200.2 24.5 112 1003-1120 542-658 (776)
28 PTZ00110 helicase; Provisional 99.8 2E-18 4.4E-23 211.5 31.3 109 1003-1115 376-484 (545)
29 PRK11776 ATP-dependent RNA hel 99.8 4.3E-18 9.4E-23 205.7 30.3 109 1003-1115 241-349 (460)
30 PRK11192 ATP-dependent RNA hel 99.8 7.7E-18 1.7E-22 202.1 29.8 104 1003-1108 244-347 (434)
31 TIGR00614 recQ_fam ATP-depende 99.8 9.8E-18 2.1E-22 202.7 29.6 105 1003-1109 225-329 (470)
32 PRK04837 ATP-dependent RNA hel 99.8 1.8E-17 3.9E-22 198.1 29.3 109 1003-1115 254-362 (423)
33 PLN00206 DEAD-box ATP-dependen 99.8 3.1E-17 6.6E-22 200.4 30.5 108 1004-1115 367-475 (518)
34 KOG0354 DEAD-box like helicase 99.8 1.2E-16 2.7E-21 192.5 34.5 126 1003-1135 412-548 (746)
35 PRK10590 ATP-dependent RNA hel 99.8 2.5E-17 5.3E-22 198.6 28.5 109 1003-1115 244-352 (456)
36 PRK01297 ATP-dependent RNA hel 99.8 3.3E-17 7.2E-22 198.6 29.5 109 1003-1115 334-442 (475)
37 PRK04537 ATP-dependent RNA hel 99.8 5E-17 1.1E-21 200.0 29.9 108 1003-1114 256-363 (572)
38 PRK11057 ATP-dependent DNA hel 99.8 6.3E-17 1.4E-21 201.0 28.5 101 1003-1105 235-335 (607)
39 PRK11634 ATP-dependent RNA hel 99.8 1.3E-16 2.9E-21 197.5 30.4 101 1003-1105 244-344 (629)
40 TIGR01389 recQ ATP-dependent D 99.8 7.9E-17 1.7E-21 200.3 28.2 102 1004-1107 224-325 (591)
41 PTZ00424 helicase 45; Provisio 99.8 9.2E-17 2E-21 190.7 27.6 110 1003-1116 266-375 (401)
42 PRK11448 hsdR type I restricti 99.8 1.2E-16 2.6E-21 206.9 28.4 105 1004-1111 698-814 (1123)
43 TIGR00643 recG ATP-dependent D 99.7 1.8E-16 4E-21 197.7 28.3 78 1027-1106 481-559 (630)
44 TIGR00580 mfd transcription-re 99.7 1E-15 2.2E-20 195.0 29.8 108 1003-1114 659-769 (926)
45 PRK10689 transcription-repair 99.7 1.4E-15 3E-20 197.7 29.0 105 1004-1112 809-916 (1147)
46 PRK10917 ATP-dependent DNA hel 99.7 1.5E-15 3.2E-20 190.8 27.9 81 1028-1112 505-586 (681)
47 KOG0331 ATP-dependent RNA heli 99.7 3.7E-15 8E-20 175.1 25.9 101 1003-1105 340-440 (519)
48 PLN03137 ATP-dependent DNA hel 99.7 3.7E-15 8E-20 187.4 27.1 104 1004-1109 680-783 (1195)
49 TIGR03817 DECH_helic helicase/ 99.6 5.8E-14 1.3E-18 177.4 30.9 116 1003-1122 270-393 (742)
50 PRK13767 ATP-dependent helicas 99.6 2E-13 4.4E-18 175.7 29.9 105 1003-1109 283-394 (876)
51 PRK02362 ski2-like helicase; P 99.6 7.6E-13 1.6E-17 168.6 32.6 82 1030-1113 305-395 (737)
52 COG0513 SrmB Superfamily II DN 99.6 1.4E-12 3E-17 158.9 30.8 107 1004-1114 273-379 (513)
53 PRK01172 ski2-like helicase; P 99.6 8.1E-13 1.8E-17 167.1 28.7 72 1031-1105 288-368 (674)
54 TIGR00348 hsdR type I site-spe 99.5 8.6E-13 1.9E-17 165.4 27.6 108 1004-1113 514-649 (667)
55 cd00079 HELICc Helicase superf 99.5 3.1E-14 6.7E-19 140.9 11.9 105 1003-1109 27-131 (131)
56 TIGR01587 cas3_core CRISPR-ass 99.5 8.9E-13 1.9E-17 154.3 24.8 108 1003-1115 221-338 (358)
57 PRK00254 ski2-like helicase; P 99.5 2E-12 4.3E-17 164.4 28.9 84 1030-1115 297-388 (720)
58 TIGR03714 secA2 accessory Sec 99.5 7.2E-13 1.6E-17 163.4 20.9 98 1003-1105 423-529 (762)
59 KOG0330 ATP-dependent RNA heli 99.5 1.5E-12 3.2E-17 144.4 20.7 123 1003-1129 299-423 (476)
60 PRK09200 preprotein translocas 99.4 1.1E-11 2.3E-16 154.5 26.5 113 1003-1124 427-547 (790)
61 KOG0328 Predicted ATP-dependen 99.4 5.6E-12 1.2E-16 134.3 19.8 110 1005-1118 267-376 (400)
62 PRK12898 secA preprotein trans 99.4 2.9E-11 6.3E-16 147.8 28.3 114 1003-1125 472-593 (656)
63 TIGR00963 secA preprotein tran 99.4 1.6E-12 3.4E-17 159.5 16.5 99 1003-1105 404-509 (745)
64 PF04851 ResIII: Type III rest 99.4 5.1E-13 1.1E-17 140.1 10.4 167 391-671 2-183 (184)
65 PRK05580 primosome assembly pr 99.4 2.4E-11 5.1E-16 152.6 26.6 93 1018-1112 440-548 (679)
66 PF00271 Helicase_C: Helicase 99.4 2.9E-13 6.4E-18 122.3 6.7 78 1022-1101 1-78 (78)
67 COG1200 RecG RecG-like helicas 99.4 4.4E-11 9.5E-16 143.2 26.9 73 1028-1102 507-580 (677)
68 smart00487 DEXDc DEAD-like hel 99.4 1.7E-12 3.6E-17 136.8 12.5 162 391-674 7-174 (201)
69 TIGR02621 cas3_GSU0051 CRISPR- 99.4 6.6E-11 1.4E-15 147.7 28.2 104 1003-1111 271-390 (844)
70 KOG0333 U5 snRNP-like RNA heli 99.4 3.9E-11 8.5E-16 137.4 23.3 110 1004-1116 517-626 (673)
71 KOG0350 DEAD-box ATP-dependent 99.4 3.9E-11 8.5E-16 136.8 22.4 109 1003-1115 428-540 (620)
72 KOG0335 ATP-dependent RNA heli 99.4 5.9E-11 1.3E-15 137.9 23.9 106 1003-1110 336-441 (482)
73 COG4096 HsdR Type I site-speci 99.4 5.4E-11 1.2E-15 143.9 23.8 107 1004-1112 426-545 (875)
74 TIGR03158 cas3_cyano CRISPR-as 99.3 1.7E-10 3.7E-15 134.9 26.5 85 1003-1098 271-357 (357)
75 cd00046 DEXDc DEAD-like helica 99.3 1.4E-11 3.1E-16 122.0 12.5 137 416-670 2-144 (144)
76 PRK09401 reverse gyrase; Revie 99.3 2.5E-10 5.3E-15 149.7 27.1 91 1004-1100 328-431 (1176)
77 PHA02653 RNA helicase NPH-II; 99.3 1.8E-09 4E-14 134.0 32.4 110 1004-1119 395-518 (675)
78 smart00490 HELICc helicase sup 99.3 6.9E-12 1.5E-16 113.3 7.7 81 1019-1101 2-82 (82)
79 TIGR00595 priA primosomal prot 99.3 3.3E-10 7.1E-15 137.7 23.7 93 1020-1114 274-382 (505)
80 PRK09751 putative ATP-dependen 99.2 6.2E-10 1.4E-14 146.5 25.2 95 1004-1100 244-371 (1490)
81 KOG0343 RNA Helicase [RNA proc 99.2 1.7E-09 3.8E-14 124.6 22.4 121 1003-1128 312-434 (758)
82 KOG4284 DEAD box protein [Tran 99.2 4E-10 8.7E-15 131.4 17.2 111 1003-1116 271-381 (980)
83 PRK13104 secA preprotein trans 99.2 1.5E-09 3.3E-14 135.4 23.4 113 1003-1124 443-593 (896)
84 KOG0336 ATP-dependent RNA heli 99.2 2E-09 4.3E-14 120.0 21.6 110 1003-1115 464-573 (629)
85 TIGR01054 rgy reverse gyrase. 99.2 1.6E-09 3.4E-14 142.4 24.6 76 1004-1084 326-408 (1171)
86 COG1205 Distinct helicase fami 99.2 2.9E-09 6.2E-14 135.8 25.1 117 1003-1123 305-430 (851)
87 PRK12906 secA preprotein trans 99.2 1.3E-09 2.8E-14 135.3 20.8 100 1003-1106 439-546 (796)
88 TIGR01970 DEAH_box_HrpB ATP-de 99.1 5E-09 1.1E-13 133.2 26.4 108 1004-1116 209-337 (819)
89 COG1201 Lhr Lhr-like helicases 99.1 7.7E-09 1.7E-13 128.8 27.4 121 1004-1130 253-375 (814)
90 COG0514 RecQ Superfamily II DN 99.1 3.3E-09 7.2E-14 127.7 21.2 109 1003-1115 229-337 (590)
91 KOG0342 ATP-dependent RNA heli 99.1 9.2E-09 2E-13 118.1 22.3 99 1004-1104 330-428 (543)
92 PRK11664 ATP-dependent RNA hel 99.1 2.2E-08 4.8E-13 127.6 26.8 109 1004-1117 212-341 (812)
93 PRK14701 reverse gyrase; Provi 99.1 1.7E-08 3.6E-13 135.5 26.7 94 1004-1103 330-446 (1638)
94 PRK12904 preprotein translocas 99.0 1.7E-08 3.6E-13 126.1 23.9 103 1003-1109 429-569 (830)
95 COG1197 Mfd Transcription-repa 99.0 4E-08 8.7E-13 124.3 26.7 109 1014-1126 813-929 (1139)
96 COG1204 Superfamily II helicas 99.0 1.2E-08 2.5E-13 128.6 22.1 104 392-564 31-135 (766)
97 PRK13107 preprotein translocas 99.0 2.1E-08 4.6E-13 124.9 23.7 113 1003-1124 448-597 (908)
98 KOG0339 ATP-dependent RNA heli 99.0 4.8E-08 1E-12 111.9 23.1 112 1003-1118 467-578 (731)
99 KOG0348 ATP-dependent RNA heli 99.0 1.5E-08 3.3E-13 116.7 19.0 112 1003-1118 424-557 (708)
100 COG1202 Superfamily II helicas 99.0 3.3E-08 7.2E-13 114.7 21.4 108 1004-1114 440-552 (830)
101 PRK09694 helicase Cas3; Provis 99.0 7.7E-08 1.7E-12 122.6 26.9 98 1003-1103 559-665 (878)
102 KOG0345 ATP-dependent RNA heli 99.0 1.2E-07 2.5E-12 108.5 24.7 104 1003-1108 254-359 (567)
103 KOG0338 ATP-dependent RNA heli 98.9 1.7E-08 3.7E-13 115.7 16.7 98 1004-1103 426-523 (691)
104 cd00268 DEADc DEAD-box helicas 98.9 9.2E-09 2E-13 110.4 13.8 158 392-671 21-185 (203)
105 COG4889 Predicted helicase [Ge 98.9 1.2E-08 2.6E-13 122.3 15.1 77 1028-1105 499-577 (1518)
106 PRK12900 secA preprotein trans 98.8 2.7E-06 5.9E-11 106.9 31.5 114 1003-1125 597-718 (1025)
107 PF13872 AAA_34: P-loop contai 98.8 2.5E-07 5.3E-12 103.0 18.0 269 371-762 13-302 (303)
108 PRK12326 preprotein translocas 98.8 8.7E-07 1.9E-11 108.4 24.2 114 1003-1125 426-554 (764)
109 PF00270 DEAD: DEAD/DEAH box h 98.7 6.8E-08 1.5E-12 100.1 10.9 158 395-677 2-168 (169)
110 PRK11131 ATP-dependent RNA hel 98.7 5.5E-07 1.2E-11 117.4 20.3 109 1003-1118 285-414 (1294)
111 TIGR01967 DEAH_box_HrpA ATP-de 98.7 6.5E-07 1.4E-11 117.1 21.1 108 1004-1118 279-407 (1283)
112 KOG0332 ATP-dependent RNA heli 98.6 2.6E-07 5.6E-12 102.9 13.2 107 1005-1115 331-443 (477)
113 PF11496 HDA2-3: Class II hist 98.6 1.7E-06 3.7E-11 97.9 17.7 123 1003-1126 116-256 (297)
114 KOG0952 DNA/RNA helicase MER3/ 98.5 6.3E-06 1.4E-10 102.3 22.7 83 1034-1118 402-494 (1230)
115 KOG0341 DEAD-box protein abstr 98.5 3.7E-07 8.1E-12 101.6 9.3 124 1004-1131 421-548 (610)
116 KOG0334 RNA helicase [RNA proc 98.5 3.1E-06 6.7E-11 105.7 18.3 108 1003-1114 612-719 (997)
117 KOG0351 ATP-dependent DNA heli 98.5 6E-06 1.3E-10 105.5 20.8 106 1003-1110 484-589 (941)
118 TIGR00631 uvrb excinuclease AB 98.4 1.5E-06 3.3E-11 108.6 14.4 109 1003-1116 441-554 (655)
119 PRK12899 secA preprotein trans 98.4 3.2E-05 7E-10 97.4 24.8 112 1003-1124 567-687 (970)
120 COG1203 CRISPR-associated heli 98.4 2E-05 4.4E-10 100.6 23.8 126 1003-1132 439-569 (733)
121 PRK05298 excinuclease ABC subu 98.4 4.5E-06 9.7E-11 105.0 16.2 107 1003-1114 445-556 (652)
122 KOG0326 ATP-dependent RNA heli 98.3 5.8E-07 1.3E-11 98.1 6.3 99 1003-1103 321-419 (459)
123 PRK13103 secA preprotein trans 98.3 1.7E-05 3.7E-10 99.6 19.8 102 1003-1108 448-586 (913)
124 PF13871 Helicase_C_4: Helicas 98.3 8.6E-07 1.9E-11 98.4 7.6 92 1045-1138 52-151 (278)
125 COG0556 UvrB Helicase subunit 98.3 0.00077 1.7E-08 79.2 31.0 122 1003-1127 445-571 (663)
126 KOG1513 Nuclear helicase MOP-3 98.3 9.2E-05 2E-09 89.3 22.5 81 1048-1130 851-939 (1300)
127 PRK12903 secA preprotein trans 98.2 9.8E-05 2.1E-09 92.1 23.1 113 1003-1124 425-545 (925)
128 COG4098 comFA Superfamily II D 98.2 0.0022 4.7E-08 71.8 29.9 96 1003-1102 304-403 (441)
129 KOG0340 ATP-dependent RNA heli 98.2 5.7E-06 1.2E-10 92.0 8.9 101 1003-1105 253-353 (442)
130 TIGR00596 rad1 DNA repair prot 98.1 0.00015 3.3E-09 92.2 21.9 52 1076-1130 478-529 (814)
131 KOG0344 ATP-dependent RNA heli 98.1 1.7E-05 3.6E-10 93.8 11.9 98 1006-1105 389-487 (593)
132 KOG0327 Translation initiation 98.1 1E-05 2.2E-10 91.4 8.7 109 1004-1116 263-371 (397)
133 COG1198 PriA Primosomal protei 98.0 0.00022 4.7E-09 89.2 20.3 86 1028-1115 506-605 (730)
134 COG1110 Reverse gyrase [DNA re 98.0 0.00015 3.2E-09 90.6 18.0 75 1004-1084 335-416 (1187)
135 KOG0823 Predicted E3 ubiquitin 97.7 1.4E-05 3E-10 84.7 1.9 55 837-893 45-101 (230)
136 KOG0951 RNA helicase BRR2, DEA 97.7 0.0014 3E-08 83.3 19.2 70 1029-1101 608-688 (1674)
137 CHL00122 secA preprotein trans 97.7 0.0015 3.2E-08 82.4 19.4 66 1003-1071 423-489 (870)
138 PRK12901 secA preprotein trans 97.6 0.01 2.3E-07 75.7 25.9 112 1003-1123 627-746 (1112)
139 KOG0353 ATP-dependent DNA heli 97.6 0.0015 3.3E-08 73.1 16.5 106 1003-1110 316-464 (695)
140 PLN03208 E3 ubiquitin-protein 97.6 3.4E-05 7.4E-10 80.4 3.1 52 839-892 18-84 (193)
141 KOG0947 Cytoplasmic exosomal R 97.6 0.0054 1.2E-07 76.4 21.4 73 1034-1109 636-717 (1248)
142 KOG0347 RNA helicase [RNA proc 97.6 0.00012 2.5E-09 85.8 6.8 103 1003-1108 462-564 (731)
143 PF07652 Flavi_DEAD: Flaviviru 97.5 0.00077 1.7E-08 67.6 11.0 44 628-672 91-138 (148)
144 PF13923 zf-C3HC4_2: Zinc fing 97.5 6.1E-05 1.3E-09 58.7 2.0 37 842-879 1-38 (39)
145 smart00504 Ubox Modified RING 97.4 7.2E-05 1.6E-09 64.6 2.2 48 840-890 2-49 (63)
146 KOG0320 Predicted E3 ubiquitin 97.4 6.8E-05 1.5E-09 76.1 2.2 52 838-892 130-183 (187)
147 KOG0346 RNA helicase [RNA proc 97.4 0.0003 6.4E-09 80.6 7.3 108 1004-1114 268-409 (569)
148 KOG0349 Putative DEAD-box RNA 97.4 0.00039 8.5E-09 79.0 7.9 96 1003-1100 504-602 (725)
149 KOG0317 Predicted E3 ubiquitin 97.4 7.7E-05 1.7E-09 81.3 2.1 51 838-891 238-288 (293)
150 PF15227 zf-C3HC4_4: zinc fing 97.3 0.00015 3.3E-09 57.4 2.4 38 842-879 1-41 (42)
151 PRK12902 secA preprotein trans 97.3 0.012 2.5E-07 74.5 19.7 66 1003-1071 438-504 (939)
152 KOG0953 Mitochondrial RNA heli 97.2 0.001 2.2E-08 78.3 9.3 108 1003-1114 357-476 (700)
153 KOG0978 E3 ubiquitin ligase in 97.1 0.00017 3.8E-09 88.2 1.9 50 840-891 644-693 (698)
154 PRK15483 type III restriction- 97.0 0.0095 2.1E-07 76.5 15.9 37 635-672 204-240 (986)
155 KOG0949 Predicted helicase, DE 97.0 0.043 9.3E-07 68.9 20.5 68 1034-1103 968-1036(1330)
156 COG0610 Type I site-specific r 97.0 0.0034 7.3E-08 82.3 11.9 58 1042-1101 579-637 (962)
157 PF00097 zf-C3HC4: Zinc finger 96.9 0.00055 1.2E-08 53.8 2.3 38 842-879 1-40 (41)
158 PF13920 zf-C3HC4_3: Zinc fing 96.8 0.00093 2E-08 55.1 2.9 44 840-886 3-47 (50)
159 PHA02929 N1R/p28-like protein; 96.7 0.0018 3.8E-08 70.8 4.6 46 839-887 174-227 (238)
160 PF13445 zf-RING_UBOX: RING-ty 96.6 0.00076 1.6E-08 53.6 1.2 36 842-878 1-43 (43)
161 TIGR00599 rad18 DNA repair pro 96.6 0.0012 2.6E-08 77.1 3.0 48 839-889 26-73 (397)
162 KOG2164 Predicted E3 ubiquitin 96.6 0.0011 2.3E-08 77.8 2.5 51 839-891 186-240 (513)
163 KOG0948 Nuclear exosomal RNA h 96.6 0.035 7.6E-07 67.8 15.1 82 1035-1119 453-542 (1041)
164 KOG0337 ATP-dependent RNA heli 96.6 0.0047 1E-07 70.8 7.5 99 1004-1104 261-359 (529)
165 KOG0352 ATP-dependent DNA heli 96.4 0.0071 1.5E-07 69.3 7.3 103 1005-1109 256-358 (641)
166 smart00184 RING Ring finger. E 96.4 0.0024 5.1E-08 48.6 2.6 38 842-879 1-38 (39)
167 COG4581 Superfamily II RNA hel 96.3 0.02 4.4E-07 73.8 11.8 151 388-669 115-269 (1041)
168 COG5574 PEX10 RING-finger-cont 96.3 0.0019 4.1E-08 69.8 1.8 49 840-890 216-265 (271)
169 PF13639 zf-RING_2: Ring finge 96.2 0.002 4.3E-08 51.6 1.3 38 841-879 2-42 (44)
170 TIGR01407 dinG_rel DnaQ family 96.2 0.041 8.8E-07 72.1 13.8 101 1003-1108 673-809 (850)
171 PF13086 AAA_11: AAA domain; P 96.2 0.078 1.7E-06 57.5 14.0 39 392-437 1-40 (236)
172 cd00162 RING RING-finger (Real 96.1 0.0038 8.2E-08 49.3 2.5 42 841-884 1-43 (45)
173 PF14634 zf-RING_5: zinc-RING 96.1 0.0044 9.5E-08 49.6 2.6 37 842-879 2-41 (44)
174 PF04564 U-box: U-box domain; 96.0 0.0035 7.6E-08 56.1 2.1 48 839-888 4-51 (73)
175 PHA02926 zinc finger-like prot 96.0 0.0043 9.4E-08 65.6 2.9 48 838-887 169-230 (242)
176 TIGR03117 cas_csf4 CRISPR-asso 95.9 0.069 1.5E-06 66.8 13.1 81 1003-1088 470-564 (636)
177 smart00489 DEXDc3 DEAD-like he 95.7 0.099 2.1E-06 59.7 12.6 42 392-436 8-49 (289)
178 smart00488 DEXDc2 DEAD-like he 95.7 0.099 2.1E-06 59.7 12.6 42 392-436 8-49 (289)
179 TIGR00570 cdk7 CDK-activating 95.7 0.0076 1.6E-07 67.8 3.4 49 840-890 4-57 (309)
180 COG0653 SecA Preprotein transl 95.6 1.2 2.5E-05 56.9 22.0 95 1003-1101 428-533 (822)
181 PF11789 zf-Nse: Zinc-finger o 95.3 0.0086 1.9E-07 50.8 1.5 45 839-883 11-57 (57)
182 KOG1802 RNA helicase nonsense 95.2 0.056 1.2E-06 65.4 8.4 80 392-543 410-490 (935)
183 PF14835 zf-RING_6: zf-RING of 95.0 0.014 3.1E-07 49.9 2.1 45 839-888 7-52 (65)
184 COG5432 RAD18 RING-finger-cont 95.0 0.011 2.4E-07 64.2 1.7 43 840-885 26-68 (391)
185 KOG0287 Postreplication repair 95.0 0.007 1.5E-07 67.0 0.1 47 840-889 24-70 (442)
186 PF02562 PhoH: PhoH-like prote 94.0 0.13 2.9E-06 55.3 7.1 44 631-676 118-161 (205)
187 PF13307 Helicase_C_2: Helicas 94.0 0.2 4.3E-06 52.4 8.2 99 1003-1107 8-144 (167)
188 KOG4172 Predicted E3 ubiquitin 93.8 0.025 5.3E-07 46.3 0.8 45 839-885 7-52 (62)
189 COG3587 Restriction endonuclea 93.7 0.2 4.3E-06 62.7 8.5 35 635-670 208-242 (985)
190 PRK10536 hypothetical protein; 93.6 0.29 6.3E-06 54.4 9.1 40 634-675 178-217 (262)
191 KOG0311 Predicted E3 ubiquitin 92.5 0.016 3.5E-07 65.1 -2.6 48 839-888 43-91 (381)
192 TIGR01407 dinG_rel DnaQ family 92.2 0.47 1E-05 62.3 9.8 42 391-435 244-285 (850)
193 KOG0824 Predicted E3 ubiquitin 92.2 0.079 1.7E-06 58.6 2.2 55 839-895 7-61 (324)
194 COG1199 DinG Rad3-related DNA 92.1 0.67 1.4E-05 59.2 10.8 102 1003-1108 478-612 (654)
195 TIGR02562 cas3_yersinia CRISPR 91.3 63 0.0014 42.9 29.3 59 1044-1105 823-884 (1110)
196 PRK08074 bifunctional ATP-depe 91.3 1 2.2E-05 59.7 11.4 104 1003-1108 751-888 (928)
197 COG5540 RING-finger-containing 90.5 0.11 2.5E-06 57.1 1.2 45 840-886 324-371 (374)
198 smart00492 HELICc3 helicase su 90.5 1.4 2.9E-05 44.9 8.9 71 1016-1088 3-83 (141)
199 COG5220 TFB3 Cdk activating ki 90.2 0.093 2E-06 55.8 0.3 50 840-889 11-66 (314)
200 PF07517 SecA_DEAD: SecA DEAD- 90.2 0.86 1.9E-05 51.2 7.9 102 390-565 75-180 (266)
201 KOG2177 Predicted E3 ubiquitin 90.1 0.12 2.7E-06 58.4 1.3 44 837-883 11-54 (386)
202 KOG2879 Predicted E3 ubiquitin 90.0 0.19 4.1E-06 55.0 2.4 43 837-879 237-281 (298)
203 KOG1785 Tyrosine kinase negati 90.0 0.18 4E-06 57.2 2.4 51 834-884 364-415 (563)
204 COG5152 Uncharacterized conser 90.0 0.14 2.9E-06 53.1 1.3 34 838-871 195-228 (259)
205 TIGR00376 DNA helicase, putati 89.9 3.9 8.5E-05 51.9 14.4 41 391-437 156-196 (637)
206 PRK14873 primosome assembly pr 89.6 0.77 1.7E-05 58.2 7.7 56 505-563 190-252 (665)
207 KOG1131 RNA polymerase II tran 89.5 0.43 9.4E-06 56.6 4.9 43 393-439 17-60 (755)
208 PRK07246 bifunctional ATP-depe 89.3 3 6.6E-05 54.5 13.1 100 1003-1107 646-777 (820)
209 KOG0347 RNA helicase [RNA proc 89.0 0.66 1.4E-05 55.5 6.0 58 506-564 266-326 (731)
210 PRK11747 dinG ATP-dependent DN 88.9 2.7 5.9E-05 54.0 12.1 75 1006-1085 536-616 (697)
211 TIGR00604 rad3 DNA repair heli 88.8 2.4 5.2E-05 54.7 11.5 103 1003-1106 521-667 (705)
212 COG5222 Uncharacterized conser 88.7 0.23 4.9E-06 54.4 1.9 43 840-884 275-318 (427)
213 KOG1132 Helicase of the DEAD s 88.3 2.7 5.8E-05 53.3 10.8 85 1003-1088 560-659 (945)
214 PRK08074 bifunctional ATP-depe 88.2 4.2 9.1E-05 54.1 13.4 39 391-432 256-294 (928)
215 PF12678 zf-rbx1: RING-H2 zinc 87.9 0.34 7.4E-06 43.3 2.2 39 840-879 20-71 (73)
216 KOG1803 DNA helicase [Replicat 87.4 2.8 6E-05 51.3 9.9 45 387-437 180-224 (649)
217 PRK10875 recD exonuclease V su 87.2 3.4 7.3E-05 52.1 11.1 42 631-674 264-305 (615)
218 KOG4150 Predicted ATP-dependen 87.1 1.4 3.1E-05 52.7 7.2 98 1003-1102 524-629 (1034)
219 KOG0340 ATP-dependent RNA heli 86.8 4.8 0.0001 46.2 10.7 57 506-563 78-137 (442)
220 PF13604 AAA_30: AAA domain; P 86.5 4.8 0.0001 43.2 10.4 39 392-435 1-39 (196)
221 PRK07246 bifunctional ATP-depe 85.6 5.8 0.00013 52.0 12.4 40 391-433 244-283 (820)
222 smart00491 HELICc2 helicase su 85.6 3 6.6E-05 42.4 7.9 70 1016-1087 3-83 (142)
223 PF09848 DUF2075: Uncharacteri 85.4 3.1 6.7E-05 48.9 9.0 16 631-646 82-97 (352)
224 KOG2660 Locus-specific chromos 84.4 0.35 7.5E-06 54.5 0.4 45 840-887 16-61 (331)
225 KOG0297 TNF receptor-associate 83.9 0.56 1.2E-05 55.8 1.9 46 840-888 22-68 (391)
226 PF06862 DUF1253: Protein of u 83.7 12 0.00025 45.2 12.8 126 1002-1128 298-430 (442)
227 TIGR01447 recD exodeoxyribonuc 83.6 9 0.00019 48.2 12.4 42 631-674 258-299 (586)
228 KOG3800 Predicted E3 ubiquitin 83.3 0.72 1.6E-05 51.1 2.3 47 841-889 2-53 (300)
229 KOG4159 Predicted E3 ubiquitin 82.6 0.64 1.4E-05 54.9 1.7 48 838-888 83-130 (398)
230 TIGR01448 recD_rel helicase, p 82.2 10 0.00022 48.9 12.4 41 632-674 416-456 (720)
231 KOG4692 Predicted E3 ubiquitin 81.7 0.76 1.6E-05 51.7 1.7 34 839-872 422-455 (489)
232 PF02399 Herpes_ori_bp: Origin 81.4 5.2 0.00011 51.0 9.0 99 1003-1110 281-385 (824)
233 KOG0802 E3 ubiquitin ligase [P 81.2 0.67 1.5E-05 57.7 1.3 48 837-887 289-341 (543)
234 KOG0826 Predicted E3 ubiquitin 81.1 0.71 1.5E-05 51.8 1.3 48 836-884 297-345 (357)
235 PF02399 Herpes_ori_bp: Origin 80.6 7.7 0.00017 49.6 10.1 38 633-670 143-190 (824)
236 PF05876 Terminase_GpA: Phage 79.3 5 0.00011 50.2 8.0 46 387-437 11-56 (557)
237 PHA02533 17 large terminase pr 79.1 21 0.00045 44.4 13.2 43 388-437 55-97 (534)
238 KOG1813 Predicted E3 ubiquitin 78.8 0.93 2E-05 50.4 1.2 41 838-879 240-280 (313)
239 KOG0337 ATP-dependent RNA heli 76.6 6 0.00013 46.4 6.9 108 505-670 92-205 (529)
240 KOG0329 ATP-dependent RNA heli 76.4 1.4 3.1E-05 47.9 1.8 45 1060-1104 302-346 (387)
241 KOG4628 Predicted E3 ubiquitin 75.6 1.4 3E-05 50.9 1.5 48 840-889 230-280 (348)
242 TIGR02881 spore_V_K stage V sp 75.3 38 0.00082 38.0 13.0 19 417-435 45-63 (261)
243 PF06733 DEAD_2: DEAD_2; Inte 75.1 1.5 3.3E-05 45.9 1.6 17 548-564 116-132 (174)
244 PF14447 Prok-RING_4: Prokaryo 74.6 1.6 3.5E-05 36.5 1.2 45 841-890 9-53 (55)
245 KOG0922 DEAH-box RNA helicase 73.5 16 0.00035 45.4 9.8 46 632-681 163-216 (674)
246 KOG0344 ATP-dependent RNA heli 73.2 4.3 9.2E-05 49.5 4.8 61 505-565 211-276 (593)
247 KOG1814 Predicted E3 ubiquitin 73.1 2.4 5.3E-05 49.2 2.6 57 832-888 177-243 (445)
248 KOG0922 DEAH-box RNA helicase 72.6 13 0.00029 46.1 8.8 114 1002-1118 256-393 (674)
249 KOG0926 DEAH-box RNA helicase 72.3 14 0.0003 46.7 8.8 21 416-436 273-293 (1172)
250 KOG1039 Predicted E3 ubiquitin 70.1 2.3 5.1E-05 49.3 1.7 46 838-885 160-219 (344)
251 PRK07003 DNA polymerase III su 69.5 68 0.0015 41.4 14.2 58 632-691 119-179 (830)
252 KOG4265 Predicted E3 ubiquitin 69.1 2.1 4.6E-05 49.0 1.1 47 838-887 289-336 (349)
253 COG1875 NYN ribonuclease and A 68.9 8.7 0.00019 44.6 5.8 40 393-437 229-268 (436)
254 KOG3039 Uncharacterized conser 67.6 2.8 6E-05 45.3 1.5 32 840-871 44-75 (303)
255 PF13401 AAA_22: AAA domain; P 66.3 4.4 9.4E-05 39.7 2.6 35 634-670 89-125 (131)
256 KOG0329 ATP-dependent RNA heli 66.3 18 0.0004 39.7 7.3 61 505-565 112-175 (387)
257 TIGR00631 uvrb excinuclease AB 66.0 22 0.00047 45.5 9.2 68 395-528 12-80 (655)
258 KOG4739 Uncharacterized protei 64.9 2.8 6.1E-05 45.7 0.9 45 840-889 4-50 (233)
259 PF12861 zf-Apc11: Anaphase-pr 64.6 6.2 0.00013 36.3 2.9 45 841-887 34-82 (85)
260 PF04641 Rtf2: Rtf2 RING-finge 63.1 5.2 0.00011 45.0 2.7 51 838-892 112-166 (260)
261 KOG1571 Predicted E3 ubiquitin 62.6 2.9 6.2E-05 48.0 0.5 44 838-887 304-347 (355)
262 KOG3039 Uncharacterized conser 62.6 3.7 8.1E-05 44.4 1.3 40 839-879 221-264 (303)
263 COG1643 HrpA HrpA-like helicas 61.8 30 0.00066 45.1 9.4 21 417-437 68-88 (845)
264 KOG0346 RNA helicase [RNA proc 60.8 15 0.00032 43.5 5.8 60 506-565 96-159 (569)
265 PF12340 DUF3638: Protein of u 59.6 34 0.00075 37.6 8.1 42 391-436 22-63 (229)
266 KOG1812 Predicted E3 ubiquitin 57.6 6 0.00013 47.0 2.1 53 839-891 146-207 (384)
267 KOG0828 Predicted E3 ubiquitin 57.2 4.9 0.00011 47.5 1.2 45 838-882 570-631 (636)
268 PRK11747 dinG ATP-dependent DN 56.4 8.6 0.00019 49.5 3.3 42 391-432 24-67 (697)
269 KOG1133 Helicase of the DEAD s 56.3 3.9 8.4E-05 50.7 0.2 81 1004-1086 629-721 (821)
270 COG5243 HRD1 HRD ubiquitin lig 56.0 9.9 0.00021 43.6 3.2 48 835-885 283-343 (491)
271 PF14570 zf-RING_4: RING/Ubox 55.9 10 0.00022 31.1 2.4 42 842-885 1-46 (48)
272 cd00009 AAA The AAA+ (ATPases 55.6 1.1E+02 0.0023 29.5 10.5 41 633-673 85-132 (151)
273 TIGR00604 rad3 DNA repair heli 55.3 42 0.00091 43.4 9.3 43 392-437 10-52 (705)
274 KOG2817 Predicted E3 ubiquitin 55.2 7.1 0.00015 45.5 2.0 45 838-884 333-382 (394)
275 PF05290 Baculo_IE-1: Baculovi 55.1 9.5 0.00021 37.8 2.5 54 835-890 76-135 (140)
276 PRK14960 DNA polymerase III su 52.5 1.1E+02 0.0024 39.0 11.7 58 632-691 118-178 (702)
277 KOG1805 DNA replication helica 51.1 71 0.0015 41.7 9.8 40 391-436 668-707 (1100)
278 PRK05298 excinuclease ABC subu 50.3 67 0.0014 41.2 9.8 78 391-537 11-89 (652)
279 PRK09112 DNA polymerase III su 50.0 56 0.0012 38.5 8.4 41 397-437 28-68 (351)
280 KOG0952 DNA/RNA helicase MER3/ 49.8 31 0.00067 45.1 6.5 59 502-562 972-1031(1230)
281 PRK14958 DNA polymerase III su 49.5 1.6E+02 0.0034 36.7 12.5 57 632-690 119-178 (509)
282 PRK14961 DNA polymerase III su 49.3 1.1E+02 0.0024 36.1 10.9 21 417-437 41-61 (363)
283 KOG1645 RING-finger-containing 48.6 6.5 0.00014 45.7 0.4 59 839-899 4-68 (463)
284 PRK14956 DNA polymerase III su 48.4 2.2E+02 0.0047 35.1 13.1 49 632-682 121-172 (484)
285 PF13245 AAA_19: Part of AAA d 47.1 36 0.00079 30.6 4.9 21 417-437 13-33 (76)
286 KOG0920 ATP-dependent RNA heli 46.7 1.6E+02 0.0036 38.8 12.3 40 391-437 172-211 (924)
287 KOG0924 mRNA splicing factor A 46.3 42 0.00092 41.9 6.6 105 1015-1122 578-704 (1042)
288 TIGR02880 cbbX_cfxQ probable R 46.1 27 0.00058 39.9 4.8 21 416-436 60-80 (284)
289 KOG0920 ATP-dependent RNA heli 46.0 41 0.00089 44.1 6.8 109 1003-1117 412-546 (924)
290 PRK07940 DNA polymerase III su 44.9 71 0.0015 38.3 8.3 23 415-437 37-59 (394)
291 TIGR03420 DnaA_homol_Hda DnaA 44.9 1.5E+02 0.0032 32.0 10.3 38 635-672 93-134 (226)
292 KOG4275 Predicted E3 ubiquitin 44.6 6.6 0.00014 43.6 -0.3 39 839-884 300-339 (350)
293 PF13177 DNA_pol3_delta2: DNA 44.5 3.8E+02 0.0081 27.7 13.8 46 632-680 102-151 (162)
294 KOG2932 E3 ubiquitin ligase in 44.2 11 0.00025 42.1 1.3 45 837-886 88-133 (389)
295 KOG0950 DNA polymerase theta/e 43.6 54 0.0012 42.7 7.2 55 506-563 272-327 (1008)
296 PRK12402 replication factor C 43.5 41 0.00088 38.8 6.0 22 416-437 38-59 (337)
297 TIGR03117 cas_csf4 CRISPR-asso 43.0 88 0.0019 39.8 9.0 41 504-544 47-90 (636)
298 CHL00181 cbbX CbbX; Provisiona 42.2 47 0.001 37.9 6.1 20 417-436 62-81 (287)
299 KOG1815 Predicted E3 ubiquitin 41.4 20 0.00044 43.6 3.1 52 838-889 69-128 (444)
300 COG1643 HrpA HrpA-like helicas 41.3 80 0.0017 41.4 8.5 113 1003-1118 258-390 (845)
301 cd03028 GRX_PICOT_like Glutare 40.4 95 0.0021 28.7 6.8 47 1003-1049 6-58 (90)
302 PRK05580 primosome assembly pr 40.4 1.6E+02 0.0034 38.0 11.0 77 1003-1082 189-266 (679)
303 PRK04195 replication factor C 40.3 2.4E+02 0.0053 34.6 12.3 22 414-435 39-60 (482)
304 TIGR00365 monothiol glutaredox 40.3 93 0.002 29.3 6.8 59 1003-1061 10-74 (97)
305 PRK14087 dnaA chromosomal repl 39.3 1.4E+02 0.0029 36.6 9.7 37 633-669 207-247 (450)
306 TIGR00595 priA primosomal prot 39.1 1.6E+02 0.0035 36.5 10.4 77 1003-1082 24-101 (505)
307 PRK10917 ATP-dependent DNA hel 39.1 1.5E+02 0.0032 38.4 10.4 77 1003-1080 309-389 (681)
308 KOG0827 Predicted E3 ubiquitin 38.0 19 0.00042 41.7 2.0 47 839-887 4-56 (465)
309 PF13173 AAA_14: AAA domain 37.9 27 0.00059 34.4 2.9 42 634-676 63-104 (128)
310 KOG0950 DNA polymerase theta/e 36.5 51 0.0011 42.9 5.5 106 1032-1142 526-637 (1008)
311 PLN03025 replication factor C 36.4 59 0.0013 37.6 5.8 61 632-692 99-160 (319)
312 PF13607 Succ_CoA_lig: Succiny 35.9 1.2E+02 0.0027 30.7 7.2 85 1006-1111 3-89 (138)
313 KOG4185 Predicted E3 ubiquitin 35.6 24 0.00052 40.4 2.4 46 839-886 3-54 (296)
314 PHA00673 acetyltransferase dom 34.8 62 0.0013 33.5 4.9 44 633-676 88-134 (154)
315 PRK12723 flagellar biosynthesi 33.8 2.1E+02 0.0046 34.2 9.8 55 632-686 254-313 (388)
316 COG0464 SpoVK ATPases of the A 33.6 69 0.0015 39.5 6.1 44 393-436 250-298 (494)
317 KOG0326 ATP-dependent RNA heli 33.5 1.7E+02 0.0037 33.7 8.3 54 506-563 156-215 (459)
318 TIGR02768 TraA_Ti Ti-type conj 33.2 2.2E+02 0.0047 37.3 10.6 40 391-436 351-390 (744)
319 KOG1734 Predicted RING-contain 32.9 16 0.00036 40.2 0.4 52 840-893 225-287 (328)
320 TIGR00643 recG ATP-dependent D 32.6 1.8E+02 0.0039 37.2 9.6 77 1003-1080 283-363 (630)
321 KOG0925 mRNA splicing factor A 31.5 35 0.00075 41.0 2.7 66 617-686 144-217 (699)
322 PRK08691 DNA polymerase III su 31.4 6.3E+02 0.014 32.7 13.8 57 632-690 119-178 (709)
323 PRK11054 helD DNA helicase IV; 30.7 81 0.0017 40.6 6.1 38 391-437 195-232 (684)
324 cd03418 GRX_GRXb_1_3_like Glut 30.5 1.8E+02 0.004 25.2 6.7 57 1006-1062 1-58 (75)
325 TIGR00362 DnaA chromosomal rep 30.4 1.7E+02 0.0036 35.1 8.5 21 416-436 138-158 (405)
326 PHA03096 p28-like protein; Pro 29.4 27 0.00058 39.7 1.4 34 840-873 179-220 (284)
327 COG1199 DinG Rad3-related DNA 29.3 1.3E+02 0.0028 38.6 7.7 44 391-437 14-57 (654)
328 PRK00149 dnaA chromosomal repl 29.0 1.9E+02 0.004 35.3 8.7 21 416-436 150-170 (450)
329 KOG4367 Predicted Zn-finger pr 28.9 23 0.0005 41.3 0.7 33 840-872 5-37 (699)
330 COG5175 MOT2 Transcriptional r 27.9 36 0.00079 38.6 2.0 50 836-887 11-64 (480)
331 KOG0327 Translation initiation 27.6 1.4E+02 0.0029 35.3 6.5 43 628-670 165-210 (397)
332 PRK14088 dnaA chromosomal repl 26.9 4.8E+02 0.01 31.7 11.6 21 416-436 132-152 (440)
333 COG4646 DNA methylase [Transcr 26.9 32 0.00069 40.9 1.4 32 659-690 472-503 (637)
334 cd05563 PTS_IIB_ascorbate PTS_ 26.5 1.6E+02 0.0034 26.7 5.8 51 506-560 2-54 (86)
335 COG0553 HepA Superfamily II DN 25.7 8.6 0.00019 50.6 -4.0 80 1007-1103 445-524 (866)
336 KOG0951 RNA helicase BRR2, DEA 25.5 4.2E+02 0.0092 36.2 10.8 55 504-563 1187-1246(1674)
337 KOG0825 PHD Zn-finger protein 25.2 16 0.00034 45.7 -1.5 46 841-889 125-173 (1134)
338 KOG0804 Cytoplasmic Zn-finger 25.0 33 0.00072 40.7 1.1 46 838-888 174-223 (493)
339 cd05566 PTS_IIB_galactitol PTS 25.0 1.2E+02 0.0027 27.6 4.8 55 505-561 2-58 (89)
340 KOG3002 Zn finger protein [Gen 24.6 48 0.001 38.1 2.3 46 837-888 46-92 (299)
341 PRK13709 conjugal transfer nic 23.7 4.4E+02 0.0095 37.8 11.4 42 390-436 965-1006(1747)
342 smart00744 RINGv The RING-vari 23.7 71 0.0015 26.3 2.5 39 841-879 1-47 (49)
343 PRK07764 DNA polymerase III su 23.6 7.8E+02 0.017 32.6 13.2 40 395-437 21-60 (824)
344 KOG0926 DEAH-box RNA helicase 22.7 71 0.0015 40.8 3.3 63 1048-1113 621-702 (1172)
345 KOG1133 Helicase of the DEAD s 22.6 3.9E+02 0.0085 34.1 9.4 31 529-564 306-336 (821)
346 cd03031 GRX_GRX_like Glutaredo 22.6 2.4E+02 0.0052 28.9 6.7 57 1006-1062 1-68 (147)
347 cd00133 PTS_IIB PTS_IIB: subun 22.4 1.8E+02 0.0038 25.5 5.2 53 506-561 2-56 (84)
348 KOG2340 Uncharacterized conser 22.2 2.6E+02 0.0056 34.5 7.6 110 1004-1114 552-667 (698)
349 PRK08727 hypothetical protein; 22.1 3.6E+02 0.0077 29.7 8.5 20 417-436 44-63 (233)
350 PRK14086 dnaA chromosomal repl 21.9 3.4E+02 0.0073 34.5 9.0 38 633-670 378-419 (617)
351 PRK14974 cell division protein 21.9 4.5E+02 0.0097 30.9 9.6 45 633-678 223-272 (336)
352 TIGR00580 mfd transcription-re 21.8 3.7E+02 0.008 36.0 9.9 77 1003-1080 499-579 (926)
353 COG1702 PhoH Phosphate starvat 21.8 51 0.0011 38.3 1.8 40 634-675 245-284 (348)
354 PRK13889 conjugal transfer rel 21.3 3.6E+02 0.0077 36.4 9.5 42 634-677 435-477 (988)
355 COG3972 Superfamily I DNA and 20.7 6.8E+02 0.015 30.9 10.5 49 630-688 293-342 (660)
356 cd05568 PTS_IIB_bgl_like PTS_I 20.6 1.4E+02 0.003 26.7 4.1 53 505-561 2-56 (85)
357 PF03354 Terminase_1: Phage Te 20.5 4E+02 0.0088 32.7 9.4 43 395-437 1-45 (477)
358 PRK14873 primosome assembly pr 20.3 3.7E+02 0.0081 34.6 9.1 62 1003-1066 187-250 (665)
359 TIGR03345 VI_ClpV1 type VI sec 20.1 4.9E+02 0.011 34.6 10.5 35 400-435 195-229 (852)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-107 Score=898.59 Aligned_cols=576 Identities=42% Similarity=0.720 Sum_probs=480.8
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccc
Q 001094 382 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 461 (1159)
Q Consensus 382 ~~~p~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~ 461 (1159)
+.+|.+ |.++|+|||++|++|+..+|.+.. .|||||||||+|||+|+|||++..-
T Consensus 175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~---------------------- 229 (791)
T KOG1002|consen 175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV---------------------- 229 (791)
T ss_pred ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence 456665 779999999999999999999876 8999999999999999999997621
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 001094 462 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 541 (1159)
Q Consensus 462 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~ 541 (1159)
..+|||||||.-.+.||.+||.+|.. |.++|++|||..
T Consensus 230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~ 267 (791)
T KOG1002|consen 230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK 267 (791)
T ss_pred ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence 12469999999999999999999875 799999999999
Q ss_pred CCCChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCccc
Q 001094 542 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 621 (1159)
Q Consensus 542 r~~~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~ 621 (1159)
|.++..++..||||+|||.++.+.+.+++. +.++| +. .
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~~~------------------------GfrrK--------ng----------v 305 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQDY------------------------GFRRK--------NG----------V 305 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhccc------------------------ccccc--------CC----------c
Confidence 999999999999999999999987755311 11111 10 1
Q ss_pred ccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchH-------
Q 001094 622 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK------- 694 (1159)
Q Consensus 622 ~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~------- 694 (1159)
+.-+++|+.+.|.||||||||.||++.+.+++|+..|.+.+||||||||+||++.|||+|++||+..||.-+-
T Consensus 306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~ 385 (791)
T KOG1002|consen 306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA 385 (791)
T ss_pred ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence 1225789999999999999999999999999999999999999999999999999999999999999985431
Q ss_pred ------------------------HHHHHhccCCCCCc-----hhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEE
Q 001094 695 ------------------------SFCSMIKVPISKNP-----VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 745 (1159)
Q Consensus 695 ------------------------~F~~~i~~pi~~~~-----~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~ 745 (1159)
.|......||++.+ ..++...+.+|+.||+||||-.-.+. +.|||+.+
T Consensus 386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdD---LgLPPRiv 462 (791)
T KOG1002|consen 386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADD---LGLPPRIV 462 (791)
T ss_pred ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccc---cCCCccce
Confidence 12233345665543 23356789999999999999654432 57999999
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcH
Q 001094 746 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 825 (1159)
Q Consensus 746 ~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~ 825 (1159)
.+..--|+.+|.++|+.|...++..|..+...|.+..||++||.++.||||+++||.|+.... .+.++.
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------~~n~~~ 531 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA-----------NANLPD 531 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh-----------hcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999986310 011111
Q ss_pred HHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhhHHhhhhc----CCCCCCCccccccccccchhhhhhhcccc
Q 001094 826 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 901 (1159)
Q Consensus 826 ~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~----~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~ 901 (1159)
+ .....+|.+|.++.++++.+.|.|.||.-|+.+++.+ ..-.||+ |...++.+. +...++...
T Consensus 532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~--C~i~LsiDl--se~alek~~ 598 (791)
T KOG1002|consen 532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPV--CHIGLSIDL--SEPALEKTD 598 (791)
T ss_pred c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcc--ccccccccc--cchhhhhcc
Confidence 1 2345789999999999999999999999999988753 3357886 887777651 111110000
Q ss_pred cCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCc
Q 001094 902 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 981 (1159)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 981 (1159)
. ++ +....+. .......|..|+||+++.+.|.-+.+.
T Consensus 599 l---~~------Fk~sSIl-nRinm~~~qsSTKIEAL~EEl~~l~~r--------------------------------- 635 (791)
T KOG1002|consen 599 L---KG------FKASSIL-NRINMDDWQSSTKIEALVEELYFLRER--------------------------------- 635 (791)
T ss_pred h---hh------hhhHHHh-hhcchhhhcchhHHHHHHHHHHHHHHc---------------------------------
Confidence 0 00 0000000 011234677899999999988776431
Q ss_pred cccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEe
Q 001094 982 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1061 (1159)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLl 1061 (1159)
...-|.|||||||+|||+|+..|.+.|+..+.+.|+|++++|++.|+.|.++++++|||+
T Consensus 636 --------------------d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 636 --------------------DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred --------------------ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 256799999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCcc
Q 001094 1062 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1141 (1159)
Q Consensus 1062 Stkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~ 1141 (1159)
|++|||+.|||+.|++|+++||||||+++.||.+|+|||||.|||.|.||++++|||++|+++|++|..|+.+.+|.++.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~ 775 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE 775 (791)
T ss_pred EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CccccCCCHHHHHhhhc
Q 001094 1142 GGQQTRLTVDDLNYLFM 1158 (1159)
Q Consensus 1142 ~~~~~~lt~~dL~~Lf~ 1158 (1159)
-..+||++||++||.
T Consensus 776 --Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 776 --AISKLTEEDMQFLFN 790 (791)
T ss_pred --HHHhcCHHHHHHHhc
Confidence 456999999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.3e-90 Score=791.48 Aligned_cols=548 Identities=39% Similarity=0.629 Sum_probs=433.8
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccc
Q 001094 380 AEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLD 459 (1159)
Q Consensus 380 ~~~~~p~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~ 459 (1159)
.+...+|..++++|+|||+.|+.||..+|.... .|||||||||||||+++|++|++.+.. +..
T Consensus 313 t~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~--~GGILaddmGLGKTlsmislil~qK~~------------~~~--- 375 (901)
T KOG4439|consen 313 TDLTETPDGLKVELMPHQKAALRWLLWRESQPP--SGGILADDMGLGKTLSMISLILHQKAA------------RKA--- 375 (901)
T ss_pred ccccCCCCcceeecchhhhhhhhhhcccccCCC--CCcccccccccccchHHHHHHHHHHHH------------HHh---
Confidence 334444445899999999999999999998764 899999999999999999999885310 000
Q ss_pred ccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeC
Q 001094 460 EEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG 539 (1159)
Q Consensus 460 ~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G 539 (1159)
....+..+.+||||||++|+.||..|+.+.+.. ..|+|++|||
T Consensus 376 ------------------------------------~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~-n~LsV~~~HG 418 (901)
T KOG4439|consen 376 ------------------------------------REKKGESASKTLIICPASLIHQWEAEVARRLEQ-NALSVYLYHG 418 (901)
T ss_pred ------------------------------------hcccccccCCeEEeCcHHHHHHHHHHHHHHHhh-cceEEEEecC
Confidence 000111122599999999999999999999864 4899999999
Q ss_pred CC-CCCChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCC
Q 001094 540 SS-RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 618 (1159)
Q Consensus 540 ~~-r~~~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~ 618 (1159)
.+ |......|.+||||||||..+.+. .+++.+ +.
T Consensus 419 ~n~r~i~~~~L~~YDvViTTY~lva~~--------~~~e~~----~~--------------------------------- 453 (901)
T KOG4439|consen 419 PNKREISAKELRKYDVVITTYNLVANK--------PDDELE----EG--------------------------------- 453 (901)
T ss_pred CccccCCHHHHhhcceEEEeeeccccC--------Cchhhh----cc---------------------------------
Confidence 99 777889999999999999999751 011100 00
Q ss_pred cccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHH
Q 001094 619 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 698 (1159)
Q Consensus 619 ~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~ 698 (1159)
...+||.+|.|.||||||||.|||++|+.+.|++.|++..|||||||||||++.|+|+|++||+..||++.+.|.+
T Consensus 454 ----~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke 529 (901)
T KOG4439|consen 454 ----KNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKE 529 (901)
T ss_pred ----cCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHH
Confidence 1136899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHH--
Q 001094 699 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA-- 776 (1159)
Q Consensus 699 ~i~~pi~~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~-- 776 (1159)
.+..+- ..+..++.-+.+++||||||+.+..+.+++.||++.++++.++|+..|...|+.+...++..++.++.
T Consensus 530 ~i~~~s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~ 605 (901)
T KOG4439|consen 530 NIDNMS----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQR 605 (901)
T ss_pred hccCcc----ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 886542 34567788889999999999999888999999999999999999999999999998888777755332
Q ss_pred ----------------------------------cCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhh
Q 001094 777 ----------------------------------AGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKK 822 (1159)
Q Consensus 777 ----------------------------------~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~ 822 (1159)
+|........||.+|+||||+|+||.+.+...+... ..+.+-
T Consensus 606 e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~----~~~~g~ 681 (901)
T KOG4439|consen 606 EDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEE----FQMNGG 681 (901)
T ss_pred hhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHH----hhhcCc
Confidence 222233456789999999999999977665322110 000000
Q ss_pred CcH-HHHHH--HHHHhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcc
Q 001094 823 LPQ-ERQMY--LLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNN 899 (1159)
Q Consensus 823 l~~-~~~~~--ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~ 899 (1159)
... +.+.. .+..++. ...|.|... +|.
T Consensus 682 ~~sde~~~e~~~l~el~k--------------~~~T~~~~D--------------------~~e---------------- 711 (901)
T KOG4439|consen 682 DDSDEEQLEEDNLAELEK--------------NDETDCSDD--------------------NCE---------------- 711 (901)
T ss_pred chhhhhhhhhhHHHhhhh--------------ccccccccc--------------------ccc----------------
Confidence 000 00000 0111100 001111100 010
Q ss_pred cccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCC
Q 001094 900 SLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGD 979 (1159)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1159)
+.|..+... .....+.|.|+...++++..+..
T Consensus 712 ---------d~p~~~~~q-------~Fe~~r~S~Ki~~~l~~le~i~~-------------------------------- 743 (901)
T KOG4439|consen 712 ---------DLPTAFPDQ-------AFEPDRPSCKIAMVLEILETILT-------------------------------- 743 (901)
T ss_pred ---------cccccchhh-------hcccccchhHHHHHHHHHHHHhh--------------------------------
Confidence 000000000 01223468999999999887621
Q ss_pred CccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcC-CCceE
Q 001094 980 TLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSV 1058 (1159)
Q Consensus 980 ~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d-~~~~V 1058 (1159)
...+|+||.|||+++|+++...|...|+.|..++|....++|+.+|+.||.. ++.+|
T Consensus 744 ----------------------~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rV 801 (901)
T KOG4439|consen 744 ----------------------SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARV 801 (901)
T ss_pred ----------------------cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceE
Confidence 2689999999999999999999999999999999999999999999999987 45999
Q ss_pred EEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCC
Q 001094 1059 MIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1138 (1159)
Q Consensus 1059 LLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~ 1138 (1159)
||+|+.|||+||||+.|||+|++|++|||+.|+||.+||+|+||+++|+||||+++||||+||..+|+.|..++..++.+
T Consensus 802 mLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G 881 (901)
T KOG4439|consen 802 MLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTG 881 (901)
T ss_pred EEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CccCccccCCCHHHHHhhhcC
Q 001094 1139 DETGGQQTRLTVDDLNYLFMV 1159 (1159)
Q Consensus 1139 ~~~~~~~~~lt~~dL~~Lf~~ 1159 (1159)
..+. .+.+||..|||-||+|
T Consensus 882 ~~tr-~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 882 SATR-KMNKLTLADLKKLFGL 901 (901)
T ss_pred cccc-ccccccHHHHHHHhCC
Confidence 6553 6789999999999986
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=6.6e-90 Score=796.68 Aligned_cols=459 Identities=33% Similarity=0.539 Sum_probs=396.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccc
Q 001094 384 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 463 (1159)
Q Consensus 384 ~p~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 463 (1159)
.|-++....|++||.+|++||..+...+. +||||||||||||+|+||++.+.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engi---ngILaDEMGLGKTlQtIs~l~yl~------------------------ 211 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGI---NGILADEMGLGKTLQTISLLGYLK------------------------ 211 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCc---ccEeehhcccchHHHHHHHHHHHH------------------------
Confidence 45555558899999999999999887664 599999999999999999998753
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 001094 464 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 543 (1159)
Q Consensus 464 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~ 543 (1159)
......+|.||+||.|++.+|.+||.+|+| .+++++|+|....
T Consensus 212 ----------------------------------~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 212 ----------------------------------GRKGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ----------------------------------HhcCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 112335789999999999999999999998 8999999998754
Q ss_pred C-----ChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCC
Q 001094 544 K-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 618 (1159)
Q Consensus 544 ~-----~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~ 618 (1159)
+ +...-..+||+||||++..++
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~d----------------------------------------------------- 281 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKD----------------------------------------------------- 281 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhh-----------------------------------------------------
Confidence 3 222335899999999999753
Q ss_pred cccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHH
Q 001094 619 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 698 (1159)
Q Consensus 619 ~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~ 698 (1159)
.+.|..+.|.++||||||+|||.+|..++.++.+.+.+|++|||||+||++.|||+||+||.|+.|++...|.+
T Consensus 282 ------k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~s 355 (971)
T KOG0385|consen 282 ------KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDS 355 (971)
T ss_pred ------HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHH
Confidence 13488899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001094 699 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 778 (1159)
Q Consensus 699 ~i~~pi~~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g 778 (1159)
+|......+....+.+|+.+|+||+|||.|.+|.. .|||+.+..+++.|++.|+++|.++...-...+ ...+
T Consensus 356 wF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~---n~~~ 427 (971)
T KOG0385|consen 356 WFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDLDAL---NGEG 427 (971)
T ss_pred HHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcchhh---cccc
Confidence 99987777777789999999999999999999986 799999999999999999999999864322222 1222
Q ss_pred CccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccC
Q 001094 779 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 858 (1159)
Q Consensus 779 ~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~Cg 858 (1159)
......++.++++||++||||+|+.+.+....
T Consensus 428 --~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~p---------------------------------------------- 459 (971)
T KOG0385|consen 428 --KGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPP---------------------------------------------- 459 (971)
T ss_pred --cchhhHHHHHHHHHHHhcCCccccCCCCCCCC----------------------------------------------
Confidence 11345677888999999999999986432110
Q ss_pred ccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHH
Q 001094 859 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 938 (1159)
Q Consensus 859 H~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~l 938 (1159)
+...+.....|+|+..+
T Consensus 460 ---------------------------------------------------------------yttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 460 ---------------------------------------------------------------YTTDEHLVTNSGKMLVL 476 (971)
T ss_pred ---------------------------------------------------------------CCcchHHHhcCcceehH
Confidence 00112223457788777
Q ss_pred HHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHH
Q 001094 939 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1018 (1159)
Q Consensus 939 le~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~Ld 1018 (1159)
-.+|.++ ++.|+||||||||++|||
T Consensus 477 DkLL~~L-------------------------------------------------------k~~GhRVLIFSQmt~mLD 501 (971)
T KOG0385|consen 477 DKLLPKL-------------------------------------------------------KEQGHRVLIFSQMTRMLD 501 (971)
T ss_pred HHHHHHH-------------------------------------------------------HhCCCeEEEeHHHHHHHH
Confidence 6666654 348999999999999999
Q ss_pred HHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCC-CceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhh
Q 001094 1019 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1097 (1159)
Q Consensus 1019 lLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~-~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~ 1097 (1159)
+|++++.-+++.|+|+||+++.++|.++|+.||.++ ..+|||+||+|||+||||++|++||+||.+|||..+.||++||
T Consensus 502 ILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 502 ILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred HHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 999999999999999999999999999999999975 6899999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 001094 1098 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1139 (1159)
Q Consensus 1098 hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~ 1139 (1159)
|||||+++|.||||++++|||++|+++...|.++-.-+++..
T Consensus 582 HRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 582 HRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred HhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999988888764
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-87 Score=781.13 Aligned_cols=477 Identities=30% Similarity=0.489 Sum_probs=404.2
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccc
Q 001094 381 EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDE 460 (1159)
Q Consensus 381 ~~~~p~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~ 460 (1159)
.+.+|.. +...|+|||++||.||+...... .|||||||||||||+|+|++++....
T Consensus 195 ~~~vPg~-I~~~Lf~yQreGV~WL~~L~~q~---~GGILgDeMGLGKTIQiisFLaaL~~-------------------- 250 (923)
T KOG0387|consen 195 GFKVPGF-IWSKLFPYQREGVQWLWELYCQR---AGGILGDEMGLGKTIQIISFLAALHH-------------------- 250 (923)
T ss_pred cccccHH-HHHHhhHHHHHHHHHHHHHHhcc---CCCeecccccCccchhHHHHHHHHhh--------------------
Confidence 3566654 66789999999999999987743 89999999999999999999987431
Q ss_pred cccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 001094 461 EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS 540 (1159)
Q Consensus 461 ~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~ 540 (1159)
.++..+|+|||||++|+.||..|+++|+| .++|.+|||.
T Consensus 251 --------------------------------------S~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t 289 (923)
T KOG0387|consen 251 --------------------------------------SGKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGT 289 (923)
T ss_pred --------------------------------------cccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecC
Confidence 11334789999999999999999999998 7999999998
Q ss_pred CCCC---------------ChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCC
Q 001094 541 SRTK---------------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSS 605 (1159)
Q Consensus 541 ~r~~---------------~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~ 605 (1159)
.+.. .........|+||||+.++..
T Consensus 290 ~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---------------------------------------- 329 (923)
T KOG0387|consen 290 GSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---------------------------------------- 329 (923)
T ss_pred CcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----------------------------------------
Confidence 7631 112224556999999999642
Q ss_pred CccCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcc
Q 001094 606 DRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL 685 (1159)
Q Consensus 606 ~~k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL 685 (1159)
..++..+.|++||+||+|+|||++|+.+.+|+.+++.+|++||||||||++.|||+||.|+
T Consensus 330 -------------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv 390 (923)
T KOG0387|consen 330 -------------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFV 390 (923)
T ss_pred -------------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhc
Confidence 1237789999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHhccCCCCCchh---------h---HHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCC
Q 001094 686 RYDPFAVYKSFCSMIKVPISKNPVK---------G---YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFT 753 (1159)
Q Consensus 686 ~~~p~~~~~~F~~~i~~pi~~~~~~---------~---~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls 753 (1159)
.|+.+++...|...|..||..+... + ...|+.+++|++|||+|.+|.. ..||.|.+.|++|.||
T Consensus 391 ~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT 466 (923)
T KOG0387|consen 391 FPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLT 466 (923)
T ss_pred cCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEecc
Confidence 9999999999999999999876522 2 3468999999999999999975 5899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHH
Q 001094 754 DEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLN 833 (1159)
Q Consensus 754 ~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~ 833 (1159)
+.||.+|..+.... .+..... | ..++|..+.-||++||||.|+.+.....
T Consensus 467 ~~QR~~Y~~fl~s~--~v~~i~n-g-----~~~~l~Gi~iLrkICnHPdll~~~~~~~---------------------- 516 (923)
T KOG0387|consen 467 KLQRRLYQRFLNSS--EVNKILN-G-----KRNCLSGIDILRKICNHPDLLDRRDEDE---------------------- 516 (923)
T ss_pred HHHHHHHHHHhhhH--HHHHHHc-C-----CccceechHHHHhhcCCcccccCccccc----------------------
Confidence 99999999986432 1222222 2 2366778888999999999886421000
Q ss_pred HhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCC
Q 001094 834 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD 913 (1159)
Q Consensus 834 ~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~ 913 (1159)
..
T Consensus 517 --------------------------------------------------------------------------~~---- 518 (923)
T KOG0387|consen 517 --------------------------------------------------------------------------KQ---- 518 (923)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred CCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHh
Q 001094 914 YSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAA 993 (1159)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 993 (1159)
.+..+..+..++|++.+.++|..+.+
T Consensus 519 --------~~D~~g~~k~sGKm~vl~~ll~~W~k---------------------------------------------- 544 (923)
T KOG0387|consen 519 --------GPDYEGDPKRSGKMKVLAKLLKDWKK---------------------------------------------- 544 (923)
T ss_pred --------CCCcCCChhhcchHHHHHHHHHHHhh----------------------------------------------
Confidence 00011334568999999999887643
Q ss_pred hhcccccccCCceEEEEcCcHHHHHHHHHHHh-hCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCc
Q 001094 994 KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK-DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNM 1072 (1159)
Q Consensus 994 ~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~-~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL 1072 (1159)
.|.|+|+|||...|||+|+.+|. ..|+.|+|+||+++.+.|+.+|++||++..++|||++|++||+||||
T Consensus 545 ---------qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNL 615 (923)
T KOG0387|consen 545 ---------QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNL 615 (923)
T ss_pred ---------CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccc
Confidence 78899999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccCCCHHH
Q 001094 1073 VAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDD 1152 (1159)
Q Consensus 1073 ~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~~~~~lt~~d 1152 (1159)
|+||+||+|||.|||.++.||..|+|||||+|+|.||||++.+||||+||.+|..|..+.+.++-..+. ..-+...|
T Consensus 616 TgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q---~RfF~~~d 692 (923)
T KOG0387|consen 616 TGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQ---RRFFKGND 692 (923)
T ss_pred ccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHH---hhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999865321 23367888
Q ss_pred HHhhhcC
Q 001094 1153 LNYLFMV 1159 (1159)
Q Consensus 1153 L~~Lf~~ 1159 (1159)
|..||.+
T Consensus 693 l~dLFsl 699 (923)
T KOG0387|consen 693 LHDLFSL 699 (923)
T ss_pred HHHHhCC
Confidence 9999863
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=7.5e-88 Score=812.31 Aligned_cols=600 Identities=26% Similarity=0.403 Sum_probs=479.3
Q ss_pred cCCCcccccccccchhhhhhhhcccccccccccCCCccccccCCCCCCCCCCCCCCeEEEeccCCCCCCcchhhcccccc
Q 001094 236 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLS 315 (1159)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1159)
-...++|.++++.|+|+.+||.+|..+++.|+. ++...|..+||.||++|=....+.-+.|+.||-+
T Consensus 242 Wet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r-------------~E~~~~~~~dy~~VdRIia~~~~~d~eYLvKW~~ 308 (1373)
T KOG0384|consen 242 WETESELLEMNVRGLKKVDNFKKKVIEEDRWRR-------------QEREEDLNKDYVIVDRIIAEQTSKDPEYLVKWRG 308 (1373)
T ss_pred ccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhhhhhhhhhhhhhcccCCCceeEEEecC
Confidence 356778888999999999999999999999987 6888899999999999955555555999999999
Q ss_pred CccccccccccccCCCccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhcCCCCCcccCCCCCCCCCCCcH
Q 001094 316 MNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLR 395 (1159)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~p~~~l~~~L~p 395 (1159)
++|+.|.|+..+...|....+...|.........|..+..-...+. -+. .+. ..|...-...|++
T Consensus 309 LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp-----~~~----Kle------~qp~~~~g~~LRd 373 (1373)
T KOG0384|consen 309 LPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRP-----RFR----KLE------KQPEYKGGNELRD 373 (1373)
T ss_pred CCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccch-----hHH----Hhh------cCccccccchhhh
Confidence 9999999999998887666655555444332222322222211111 111 111 2233333468999
Q ss_pred HHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccccccc
Q 001094 396 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 475 (1159)
Q Consensus 396 hQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~ 475 (1159)
||++|++||+...... ..||||||||||||||+|+++....
T Consensus 374 yQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~------------------------------------ 414 (1373)
T KOG0384|consen 374 YQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLF------------------------------------ 414 (1373)
T ss_pred hhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHH------------------------------------
Confidence 9999999999876543 5599999999999999999997632
Q ss_pred ccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh---------
Q 001094 476 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--------- 546 (1159)
Q Consensus 476 ~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--------- 546 (1159)
......+|.|||||.|.+.+|++|+..|. .+++++|||....+..
T Consensus 415 ----------------------~~~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~ 468 (1373)
T KOG0384|consen 415 ----------------------HSLQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHS 468 (1373)
T ss_pred ----------------------HhhhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHHHHHHHHHheec
Confidence 12234578999999999999999999997 5999999998654321
Q ss_pred --hhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccc
Q 001094 547 --CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 624 (1159)
Q Consensus 547 --~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~ 624 (1159)
...-+++++||||.++.++.
T Consensus 469 ~~~~~lkf~~lltTye~~LkDk---------------------------------------------------------- 490 (1373)
T KOG0384|consen 469 SNTKKLKFNALLTTYEIVLKDK---------------------------------------------------------- 490 (1373)
T ss_pred CCccccccceeehhhHHHhccH----------------------------------------------------------
Confidence 22347999999999997542
Q ss_pred cCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhccCC
Q 001094 625 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 704 (1159)
Q Consensus 625 ~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~~pi 704 (1159)
..|..++|..+++||||++||..+..+..+..++.++|+++||||+||++.|||+|++||+|+.|..+..|...+
T Consensus 491 -~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~---- 565 (1373)
T KOG0384|consen 491 -AELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF---- 565 (1373)
T ss_pred -hhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh----
Confidence 238899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCchhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccH
Q 001094 705 SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 784 (1159)
Q Consensus 705 ~~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~ 784 (1159)
......+++.|+.+|+|+||||.|++|.+ .|||+.+.++.|+||..|+++|..+..+....+ ..|....+
T Consensus 566 ~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~L----tKG~~g~~- 635 (1373)
T KOG0384|consen 566 DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSAL----TKGAKGST- 635 (1373)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHH----hccCCCCC-
Confidence 33456789999999999999999999987 899999999999999999999999987654433 34443333
Q ss_pred HHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccchhh
Q 001094 785 VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 864 (1159)
Q Consensus 785 ~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~ 864 (1159)
.++|..++.||+|||||+|+.+.+.........
T Consensus 636 ~~lLNimmELkKccNHpyLi~gaee~~~~~~~~----------------------------------------------- 668 (1373)
T KOG0384|consen 636 PSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD----------------------------------------------- 668 (1373)
T ss_pred chHHHHHHHHHHhcCCccccCcHHHHHHHhhhh-----------------------------------------------
Confidence 788888999999999999998754321000000
Q ss_pred hHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHH
Q 001094 865 CICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQS 944 (1159)
Q Consensus 865 Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~ 944 (1159)
|+ .+ ..| ......|+|+..+-.+|.
T Consensus 669 ------------~~---------~d-----~~L----------------------------~~lI~sSGKlVLLDKLL~- 693 (1373)
T KOG0384|consen 669 ------------KM---------RD-----EAL----------------------------QALIQSSGKLVLLDKLLP- 693 (1373)
T ss_pred ------------cc---------hH-----HHH----------------------------HHHHHhcCcEEeHHHHHH-
Confidence 00 00 000 000112444444444443
Q ss_pred hcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHH
Q 001094 945 LAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL 1024 (1159)
Q Consensus 945 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L 1024 (1159)
++++.|+|||||||+++|||+|+++|
T Consensus 694 ------------------------------------------------------rLk~~GHrVLIFSQMVRmLDIL~eYL 719 (1373)
T KOG0384|consen 694 ------------------------------------------------------RLKEGGHRVLIFSQMVRMLDILAEYL 719 (1373)
T ss_pred ------------------------------------------------------HHhcCCceEEEhHHHHHHHHHHHHHH
Confidence 34458999999999999999999999
Q ss_pred hhCCCcEEecCCCCCHHHHHHHHHHHhcC-CCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCC
Q 001094 1025 KDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103 (1159)
Q Consensus 1025 ~~~gi~~~rldGs~s~~~R~~~v~~F~~d-~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQt 1103 (1159)
..++++|.||||++..+.|+++|+.||.+ .+-+|||+||+|||+||||+.|++|||||.+|||..+.||+.|||||||+
T Consensus 720 ~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk 799 (1373)
T KOG0384|consen 720 SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK 799 (1373)
T ss_pred HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhccc
Confidence 99999999999999999999999999986 46799999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCc---cCccccCCCHHHHHhhh
Q 001094 1104 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE---TGGQQTRLTVDDLNYLF 1157 (1159)
Q Consensus 1104 k~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~---~~~~~~~lt~~dL~~Lf 1157 (1159)
+.|.|||||+++|||+-|+++..+|.-|-.+++..-. .......++-+||-.|+
T Consensus 800 k~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 800 KHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred ceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999887666653322 12334668888887764
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=4.8e-85 Score=782.67 Aligned_cols=529 Identities=31% Similarity=0.500 Sum_probs=421.9
Q ss_pred hHHHHHHHHHhhcCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCC
Q 001094 362 SDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPP 441 (1159)
Q Consensus 362 ~d~~~~~~~~l~~~~~~~~~~~~p~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~ 441 (1159)
..||.+++..+..-..|. +.+|-. +++.||.||.+||+|+....+-++| ||||||||||||+|+|++++.....
T Consensus 948 e~erkFLeqlldpski~~--y~Ip~p-I~a~LRkYQqEGVnWLaFLnky~LH---GILcDDMGLGKTLQticilAsd~y~ 1021 (1549)
T KOG0392|consen 948 EEERKFLEQLLDPSKIPE--YKIPVP-ISAKLRKYQQEGVNWLAFLNKYKLH---GILCDDMGLGKTLQTICILASDHYK 1021 (1549)
T ss_pred HHHHHHHHHhcCcccCCc--cccccc-hhHHHHHHHHhccHHHHHHHHhccc---ceeeccccccHHHHHHHHHHHHHHh
Confidence 455566665553333333 344443 5788999999999999998876654 8999999999999999999863100
Q ss_pred CCCCccchhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHH
Q 001094 442 SFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEE 521 (1159)
Q Consensus 442 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~E 521 (1159)
+ +.... .-...|.|||||.+|..+|+.|
T Consensus 1022 ---------r----------------------~s~~~---------------------e~~~~PSLIVCPsTLtGHW~~E 1049 (1549)
T KOG0392|consen 1022 ---------R----------------------RSESS---------------------EFNRLPSLIVCPSTLTGHWKSE 1049 (1549)
T ss_pred ---------h----------------------cccch---------------------hhccCCeEEECCchhhhHHHHH
Confidence 0 00001 1123468999999999999999
Q ss_pred HHHhcCCCCCcEEEEEeCCCCC--CChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccC
Q 001094 522 LRNKVTSKGSLSVLVYHGSSRT--KDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKR 599 (1159)
Q Consensus 522 i~k~~~~~~~l~Vlvy~G~~r~--~~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~ 599 (1159)
+.+++| -|+|+.|.|.... .......+++|+||+|+++++++.
T Consensus 1050 ~~kf~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d-------------------------------- 1094 (1549)
T KOG0392|consen 1050 VKKFFP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD-------------------------------- 1094 (1549)
T ss_pred HHHhcc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--------------------------------
Confidence 999998 5999999997644 355666788999999999987641
Q ss_pred CCCCCCCccCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHH
Q 001094 600 KCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLY 679 (1159)
Q Consensus 600 k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLy 679 (1159)
.|.++.|.++|+||+|-|||.+|+.++|+..|++.+|++||||||||++.|||
T Consensus 1095 ---------------------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLW 1147 (1549)
T KOG0392|consen 1095 ---------------------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELW 1147 (1549)
T ss_pred ---------------------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHH
Confidence 16788999999999999999999999999999999999999999999999999
Q ss_pred hchhcccccCCCchHHHHHHhccCCCCC--c----------hhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEE
Q 001094 680 SYFRFLRYDPFAVYKSFCSMIKVPISKN--P----------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIML 747 (1159)
Q Consensus 680 slL~fL~~~p~~~~~~F~~~i~~pi~~~--~----------~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~v 747 (1159)
|||.||+|+.+++.+.|.++|.+||-.. . ..++..||+.+-|||+||.|.+|+. +||||.++.
T Consensus 1148 SLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQD 1222 (1549)
T KOG0392|consen 1148 SLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQD 1222 (1549)
T ss_pred HHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhh
Confidence 9999999999999999999999998432 1 2346788999999999999999997 899999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--HHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcH
Q 001094 748 KQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN--YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 825 (1159)
Q Consensus 748 v~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~--~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~ 825 (1159)
++|+|++.|+++|+.+....+.......+.|....+ ..++|+.|..||+.|+||.|+........ ..
T Consensus 1223 yyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l----a~------- 1291 (1549)
T KOG0392|consen 1223 YYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL----AA------- 1291 (1549)
T ss_pred eeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH----HH-------
Confidence 999999999999999877644333333333333222 68999999999999999999976321110 00
Q ss_pred HHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCC
Q 001094 826 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQ 905 (1159)
Q Consensus 826 ~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~ 905 (1159)
++..|+|. +..
T Consensus 1292 ---------------------------i~~~l~~~-------------------------------------~~~----- 1302 (1549)
T KOG0392|consen 1292 ---------------------------IVSHLAHF-------------------------------------NSS----- 1302 (1549)
T ss_pred ---------------------------HHHHHHHh-------------------------------------hhh-----
Confidence 01111110 000
Q ss_pred CCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccc
Q 001094 906 PGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNIS 985 (1159)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 985 (1159)
-+....++|+.|+-++|.+=.- |+.+....+. .
T Consensus 1303 --------------------LHdi~hspKl~AL~qLL~eCGi----------------------g~~~~~~~g~-~---- 1335 (1549)
T KOG0392|consen 1303 --------------------LHDIQHSPKLSALKQLLSECGI----------------------GNNSDSEVGT-P---- 1335 (1549)
T ss_pred --------------------HHHhhhchhHHHHHHHHHHhCC----------------------CCCCcccccC-c----
Confidence 0112358899999888865311 1111000000 0
Q ss_pred hhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhC---CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee
Q 001094 986 DENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062 (1159)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~---gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS 1062 (1159)
....++|+|||+||.+|+|+++.-|-+. .+.|.|+||+.++.+|.+++++||+||.+.|||++
T Consensus 1336 --------------s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLT 1401 (1549)
T KOG0392|consen 1336 --------------SDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLT 1401 (1549)
T ss_pred --------------chhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEe
Confidence 0026899999999999999999999764 56789999999999999999999999999999999
Q ss_pred ccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccC
Q 001094 1063 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETG 1142 (1159)
Q Consensus 1063 tkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~ 1142 (1159)
|++||+|||||+|++|||+|.+|||..+.||+||||||||+|.|.|||||++||+||+|+.+|.-|...++.+++.+-
T Consensus 1402 ThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN-- 1479 (1549)
T KOG0392|consen 1402 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN-- 1479 (1549)
T ss_pred eeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ccccCCCHHHHHhhhc
Q 001094 1143 GQQTRLTVDDLNYLFM 1158 (1159)
Q Consensus 1143 ~~~~~lt~~dL~~Lf~ 1158 (1159)
..+.....++|..||.
T Consensus 1480 asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1480 ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred ccccccCHHHHHHHhc
Confidence 3566788999999996
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-84 Score=756.26 Aligned_cols=497 Identities=31% Similarity=0.506 Sum_probs=389.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
+.|.+||+.||+|+.-.....+ .||||||||||||+|+||++++.+.
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq------------------------------ 444 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQ------------------------------ 444 (941)
T ss_pred CcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHH------------------------------
Confidence 5699999999999998877654 4799999999999999999988531
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh----
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP---- 546 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~---- 546 (1159)
. +..+|.|||||+|+|.+|.+|+++|+| .|+|..|||+...+..
T Consensus 445 ----------------------------~-g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 445 ----------------------------I-GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ----------------------------c-CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 1 225789999999999999999999998 8999999999744311
Q ss_pred --hhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccc
Q 001094 547 --CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 624 (1159)
Q Consensus 547 --~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~ 624 (1159)
..-..|||++|||..+... ++|
T Consensus 493 i~~~~~~ydVllTTY~la~~~--------kdD------------------------------------------------ 516 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASS--------KDD------------------------------------------------ 516 (941)
T ss_pred HhccCCCccEEEEEeecccCC--------hHH------------------------------------------------
Confidence 1123899999999998642 111
Q ss_pred cCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchH-HHHHHhccC
Q 001094 625 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK-SFCSMIKVP 703 (1159)
Q Consensus 625 ~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~-~F~~~i~~p 703 (1159)
.+.|....|++||.||+|++||..|.+++.+..+.|++|++|||||+||++.||+|||.|+.|..|.... .+...|...
T Consensus 517 Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k 596 (941)
T KOG0389|consen 517 RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAK 596 (941)
T ss_pred HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhcc
Confidence 1347788999999999999999999999999999999999999999999999999999999999997653 344444322
Q ss_pred CC-CC-------chhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 001094 704 IS-KN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYA 775 (1159)
Q Consensus 704 i~-~~-------~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~ 775 (1159)
-. .+ .+.++.+...+++||+|||.|.+|++ .||||..++.+|+|+..|+.+|..+............
T Consensus 597 ~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~ 671 (941)
T KOG0389|consen 597 KTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVS 671 (941)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccc
Confidence 21 11 13457889999999999999999997 8999999999999999999999998665422111111
Q ss_pred HcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCC--Cccc-
Q 001094 776 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDP--PEDA- 852 (1159)
Q Consensus 776 ~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~--~~~~- 852 (1159)
.. ....+ -..+++||++++||.|++.+..+..+. .|++.+..+.+ .|. |+.. .|+.
T Consensus 672 ~n-s~~~~----~~vlmqlRK~AnHPLL~R~~Y~de~L~---~mak~il~e~a------------y~~-~n~qyIfEDm~ 730 (941)
T KOG0389|consen 672 KN-SELKS----GNVLMQLRKAANHPLLFRSIYTDEKLR---KMAKRILNEPA------------YKK-ANEQYIFEDME 730 (941)
T ss_pred cc-ccccc----chHHHHHHHHhcChhHHHHhccHHHHH---HHHHHHhCchh------------hhh-cCHHHHHHHHH
Confidence 11 00111 335789999999999998765544333 34444433221 011 1100 0000
Q ss_pred hhc-ccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccc
Q 001094 853 VVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYN 931 (1159)
Q Consensus 853 ~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1159)
+.+ .=-|.+|.+ .+ .+.........|..
T Consensus 731 ~msDfelHqLc~~-------------------f~--------------------------------~~~~f~L~d~~~md 759 (941)
T KOG0389|consen 731 VMSDFELHQLCCQ-------------------FR--------------------------------HLSKFQLKDDLWMD 759 (941)
T ss_pred hhhHHHHHHHHHh-------------------cC--------------------------------CCcccccCCchhhh
Confidence 000 001222222 00 00000112345667
Q ss_pred cHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEc
Q 001094 932 SSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFS 1011 (1159)
Q Consensus 932 s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFS 1011 (1159)
|+|++.+-.+|.++. ..|+||||||
T Consensus 760 SgK~r~L~~LLp~~k-------------------------------------------------------~~G~RVLiFS 784 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIK-------------------------------------------------------KKGDRVLIFS 784 (941)
T ss_pred hhhHhHHHHHHHHHh-------------------------------------------------------hcCCEEEEee
Confidence 999999999887753 3689999999
Q ss_pred CcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhh
Q 001094 1012 QWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTED 1091 (1159)
Q Consensus 1012 q~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~ 1091 (1159)
|||.|||+|+..|...++.|+|+||++....|+.+|+.|+++.+++|||+||+|||.|||||+||+||++|..+||..+.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCc
Q 001094 1092 QAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1140 (1159)
Q Consensus 1092 QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~ 1140 (1159)
||.+|+||+||+|+|+|||||+++||||.|+++...|..+-+.+.++++
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 9999999999999999999999999999999999999998776665443
No 8
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7e-85 Score=790.88 Aligned_cols=563 Identities=45% Similarity=0.706 Sum_probs=486.8
Q ss_pred HHHHhhcCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCcc
Q 001094 368 LQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTED 447 (1159)
Q Consensus 368 ~~~~l~~~~~~~~~~~~p~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~ 447 (1159)
+.++...+.++..+...|.+.++++ |+....||+........++||||||+||||||+++|++++..+.....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~--- 182 (674)
T KOG1001|consen 110 FKAAKWEIILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKE--- 182 (674)
T ss_pred hhhhhhhhhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcc---
Confidence 3333333445555666676666666 666677777777666678999999999999999999999886532100
Q ss_pred chhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcC
Q 001094 448 DNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVT 527 (1159)
Q Consensus 448 ~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~ 527 (1159)
.......++||||||.+++.||..|+ ....
T Consensus 183 -------------------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-ek~~ 212 (674)
T KOG1001|consen 183 -------------------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-EKVT 212 (674)
T ss_pred -------------------------------------------------hhhccccCceeEecchHHHHHHHHHH-hccC
Confidence 00224567899999999999999999 6777
Q ss_pred CCCCcEEEEEeCCCCCCChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCc
Q 001094 528 SKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDR 607 (1159)
Q Consensus 528 ~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 607 (1159)
.++.+.+++||| |.++..++..||||||||.++..
T Consensus 213 ~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~------------------------------------------- 247 (674)
T KOG1001|consen 213 EEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN------------------------------------------- 247 (674)
T ss_pred CccceEEEEecc--cccccchhcCCceEEeeHHHhhc-------------------------------------------
Confidence 788999999999 89999999999999999999963
Q ss_pred cCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccc
Q 001094 608 KGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687 (1159)
Q Consensus 608 k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~ 687 (1159)
+++..+.|.|||+||||.|+|++++.+++++.|.+.+||||||||+||+++|||++++|+..
T Consensus 248 ------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~ 309 (674)
T KOG1001|consen 248 ------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEI 309 (674)
T ss_pred ------------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhc
Confidence 34778999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhccCCCCCc-hhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 001094 688 DPFAVYKSFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 766 (1159)
Q Consensus 688 ~p~~~~~~F~~~i~~pi~~~~-~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~ 766 (1159)
+||..+..|...+..|+..+. ..++.+++.+|+.+|+||||....+|+|++.|||+.+.+..++++..|+.+|..++..
T Consensus 310 ~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~ 389 (674)
T KOG1001|consen 310 HPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKAN 389 (674)
T ss_pred CCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhh
Confidence 999999999999999999988 8899999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCC
Q 001094 767 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 846 (1159)
Q Consensus 767 ~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~ 846 (1159)
.+.++..+...|++..+|..++.+++||||+|+||.++............... ....+...+..+ ..|.+|.
T Consensus 390 ~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~-------~~~~~i~~l~~~-~~c~ic~ 461 (674)
T KOG1001|consen 390 SRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAA-------LIIRLIVDLSVS-HWCHICC 461 (674)
T ss_pred hhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccch-------HHHHHHHHHhhc-ccccccc
Confidence 99999999999999999999999999999999999998754322211111110 111144455555 8999999
Q ss_pred CCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCC
Q 001094 847 DPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCE 926 (1159)
Q Consensus 847 ~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1159)
+ ++.++++.|||.||.+|+.+.+....+. |++.|+..+....+++...+...+.+.
T Consensus 462 ~-~~~~~it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~~---------------------- 517 (674)
T KOG1001|consen 462 D-LDSFFITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIINDL---------------------- 517 (674)
T ss_pred c-cccceeecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhhc----------------------
Confidence 9 8899999999999999999999988776 555699999988888765544433220
Q ss_pred CcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCce
Q 001094 927 GVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1006 (1159)
Q Consensus 927 ~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~K 1006 (1159)
...+.||.++++.|+..-. ... .|
T Consensus 518 --~~~s~ki~~~~~~l~~~~~-----------------------------------------------------s~~-~k 541 (674)
T KOG1001|consen 518 --LPESSKIYAFLKILQAKEM-----------------------------------------------------SEQ-PK 541 (674)
T ss_pred --cchhhhhHHHHHHHhhccC-----------------------------------------------------CCC-Cc
Confidence 0058899999999873200 013 49
Q ss_pred EEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCC
Q 001094 1007 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086 (1159)
Q Consensus 1007 vIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WN 1086 (1159)
+||||||+.++++++..|...++.+.+++|.|+..+|.+.+..|..++.++||++|++|||+||||++|+|||++|||||
T Consensus 542 iiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wn 621 (674)
T KOG1001|consen 542 IVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWN 621 (674)
T ss_pred eeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCC
Q 001094 1087 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1138 (1159)
Q Consensus 1087 P~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~ 1138 (1159)
|++|+|||+|+||+||+++|+|+||++++|+||||+++|++|+.+++.|+|+
T Consensus 622 p~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 622 PAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred hHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999999999999999986
No 9
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.8e-82 Score=794.12 Aligned_cols=472 Identities=29% Similarity=0.476 Sum_probs=397.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccc
Q 001094 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQ 466 (1159)
Q Consensus 387 ~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~ 466 (1159)
..++..|+|||+.||+||+..... +.|||||||||||||+|+|+++...+.
T Consensus 164 ~~i~~~Lr~YQleGlnWLi~l~~~---g~gGILADEMGLGKTlQaIalL~~L~~-------------------------- 214 (1033)
T PLN03142 164 SCIKGKMRDYQLAGLNWLIRLYEN---GINGILADEMGLGKTLQTISLLGYLHE-------------------------- 214 (1033)
T ss_pred hHhccchHHHHHHHHHHHHHHHhc---CCCEEEEeCCCccHHHHHHHHHHHHHH--------------------------
Confidence 346688999999999999987653 368999999999999999999976321
Q ss_pred cccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC-
Q 001094 467 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD- 545 (1159)
Q Consensus 467 ~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~- 545 (1159)
.....+|+|||||++++.||.+||.+|++ .+++++|+|....+.
T Consensus 215 --------------------------------~~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~eR~~ 259 (1033)
T PLN03142 215 --------------------------------YRGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEERAH 259 (1033)
T ss_pred --------------------------------hcCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHHHHH
Confidence 11234679999999999999999999987 799999999764321
Q ss_pred ----hhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCccc
Q 001094 546 ----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 621 (1159)
Q Consensus 546 ----~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~ 621 (1159)
......+|||||||+++.++.
T Consensus 260 ~~~~~~~~~~~dVvITSYe~l~~e~------------------------------------------------------- 284 (1033)
T PLN03142 260 QREELLVAGKFDVCVTSFEMAIKEK------------------------------------------------------- 284 (1033)
T ss_pred HHHHHhcccCCCcceecHHHHHHHH-------------------------------------------------------
Confidence 112357999999999997531
Q ss_pred ccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhc
Q 001094 622 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIK 701 (1159)
Q Consensus 622 ~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~ 701 (1159)
..|..+.|++|||||||+|||..|+++++++.+++.+||+|||||++|++.|||++|+||.|+.|++...|..+|.
T Consensus 285 ----~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~ 360 (1033)
T PLN03142 285 ----TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ 360 (1033)
T ss_pred ----HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHc
Confidence 1266789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 001094 702 VPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVK 781 (1159)
Q Consensus 702 ~pi~~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~ 781 (1159)
.+..........+|+.+|++||+||+|.+|.. .|||+.+.+++|.|++.|+++|..+.......+ ..+.
T Consensus 361 ~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l----~~g~-- 429 (1033)
T PLN03142 361 ISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVV----NAGG-- 429 (1033)
T ss_pred cccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH----hccc--
Confidence 76555556678899999999999999999975 799999999999999999999999876544332 2222
Q ss_pred ccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccc
Q 001094 782 QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVF 861 (1159)
Q Consensus 782 ~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~ 861 (1159)
....++..+++||++|+||.|+....... +..
T Consensus 430 -~~~~LlnilmqLRk~cnHP~L~~~~ep~~----------------------------------------~~~------- 461 (1033)
T PLN03142 430 -ERKRLLNIAMQLRKCCNHPYLFQGAEPGP----------------------------------------PYT------- 461 (1033)
T ss_pred -cHHHHHHHHHHHHHHhCCHHhhhcccccC----------------------------------------ccc-------
Confidence 33467888899999999999875321100 000
Q ss_pred hhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHH
Q 001094 862 CNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV 941 (1159)
Q Consensus 862 C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~ 941 (1159)
. .......|+|+..+.++
T Consensus 462 -----------------------------------------------------~---------~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 462 -----------------------------------------------------T---------GEHLVENSGKMVLLDKL 479 (1033)
T ss_pred -----------------------------------------------------c---------hhHHhhhhhHHHHHHHH
Confidence 0 00011247888888877
Q ss_pred HHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHH
Q 001094 942 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLE 1021 (1159)
Q Consensus 942 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe 1021 (1159)
|..+. ..++||||||||+.|+++|+
T Consensus 480 L~~Lk-------------------------------------------------------~~g~KVLIFSQft~~LdiLe 504 (1033)
T PLN03142 480 LPKLK-------------------------------------------------------ERDSRVLIFSQMTRLLDILE 504 (1033)
T ss_pred HHHHH-------------------------------------------------------hcCCeEEeehhHHHHHHHHH
Confidence 76652 26899999999999999999
Q ss_pred HHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCC-CceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhccc
Q 001094 1022 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100 (1159)
Q Consensus 1022 ~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~-~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRi 1100 (1159)
.+|...|++|++|+|+++..+|++++++|++++ ...|||+|++|||+|||||.|++||+||+||||+.+.||+||||||
T Consensus 505 d~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRI 584 (1033)
T PLN03142 505 DYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRI 584 (1033)
T ss_pred HHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhc
Confidence 999999999999999999999999999999754 5679999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccCCCHHHHHhhhc
Q 001094 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1158 (1159)
Q Consensus 1101 GQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~~~~~lt~~dL~~Lf~ 1158 (1159)
||+++|+||||+++||||++|++++..|..+...+++.+... ....++.+||..||.
T Consensus 585 GQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~-~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 585 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLA-EQKTVNKDELLQMVR 641 (1033)
T ss_pred CCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999888764432 235688999988874
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=5.1e-81 Score=737.19 Aligned_cols=576 Identities=30% Similarity=0.471 Sum_probs=421.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccc
Q 001094 386 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465 (1159)
Q Consensus 386 ~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 465 (1159)
+.+|...|+.||+.|+.||.......+ .||||||||||||||+|+|+++.-
T Consensus 609 PsLLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLA-------------------------- 659 (1958)
T KOG0391|consen 609 PSLLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLA-------------------------- 659 (1958)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHH--------------------------
Confidence 346788899999999999999887664 589999999999999999998741
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 001094 466 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 545 (1159)
Q Consensus 466 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~ 545 (1159)
-....++|.|||||++++-+|+-|+++|+| .|+++.|+|+.+.+.
T Consensus 660 --------------------------------CeegnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~kErk 704 (1958)
T KOG0391|consen 660 --------------------------------CEEGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHKERK 704 (1958)
T ss_pred --------------------------------hcccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHHHHH
Confidence 122456789999999999999999999998 899999999976542
Q ss_pred -----hhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcc
Q 001094 546 -----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 620 (1159)
Q Consensus 546 -----~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~ 620 (1159)
..+-..|.|.||+|..+..+..
T Consensus 705 eKRqgW~kPnaFHVCItSYklv~qd~~----------------------------------------------------- 731 (1958)
T KOG0391|consen 705 EKRQGWAKPNAFHVCITSYKLVFQDLT----------------------------------------------------- 731 (1958)
T ss_pred HHhhcccCCCeeEEeehhhHHHHhHHH-----------------------------------------------------
Confidence 3445678999999999975421
Q ss_pred cccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHh
Q 001094 621 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 700 (1159)
Q Consensus 621 ~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i 700 (1159)
.+.+.+|.++||||||+|||.++++|+|+..+++.+|++|||||+||++.|||+|++||+|..|.+...|..||
T Consensus 732 ------AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wf 805 (1958)
T KOG0391|consen 732 ------AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWF 805 (1958)
T ss_pred ------HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHh
Confidence 25677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC-------chhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 001094 701 KVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 773 (1159)
Q Consensus 701 ~~pi~~~-------~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~ 773 (1159)
.+|+..- ...-..+||.+|++|+|||+|.+|.+ .||.|.+++++|.||..||.+|+.+..+ ..-++
T Consensus 806 snPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq--~~TKe 878 (1958)
T KOG0391|consen 806 SNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQ--PGTKE 878 (1958)
T ss_pred cCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhc--cchhh
Confidence 9998542 23447899999999999999999987 8999999999999999999999988543 23344
Q ss_pred HHHcCCccccHHHHHHHHHHHHHhcCccccccccC-------------cch-hhhhHHH---------------------
Q 001094 774 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD-------------SNS-LLRSSVE--------------------- 818 (1159)
Q Consensus 774 ~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~-------------~~~-~~~~~~e--------------------- 818 (1159)
.+..| +++++|..||+||++||||.|+...- +.+ ..+...+
T Consensus 879 tLkSG----hfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp 954 (1958)
T KOG0391|consen 879 TLKSG----HFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVP 954 (1958)
T ss_pred HhhcC----chhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCccccc
Confidence 45444 88999999999999999998874210 000 0000000
Q ss_pred -------------------------------------------------------------------------------H
Q 001094 819 -------------------------------------------------------------------------------M 819 (1159)
Q Consensus 819 -------------------------------------------------------------------------------~ 819 (1159)
+
T Consensus 955 ~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~ 1034 (1958)
T KOG0391|consen 955 AVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSR 1034 (1958)
T ss_pred ccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhH
Confidence 0
Q ss_pred Hhh-----------------------------------------------------------------------------
Q 001094 820 AKK----------------------------------------------------------------------------- 822 (1159)
Q Consensus 820 ak~----------------------------------------------------------------------------- 822 (1159)
++.
T Consensus 1035 veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~ 1114 (1958)
T KOG0391|consen 1035 VEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATL 1114 (1958)
T ss_pred hhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhh
Confidence 000
Q ss_pred ------------CcHHHHHHHHHHhhh----c-----cccccCCC-----------CCCccchhcccCc-cchhhhHHhh
Q 001094 823 ------------LPQERQMYLLNCLEA----S-----LAICGICN-----------DPPEDAVVSICGH-VFCNQCICER 869 (1159)
Q Consensus 823 ------------l~~~~~~~ll~~le~----~-----~~~C~iC~-----------~~~~~~~i~~CgH-~~C~~Ci~~~ 869 (1159)
+..++.-.+...++. . ...-.+|. +.++..+++.|.- ..|..-|..+
T Consensus 1115 ~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrf 1194 (1958)
T KOG0391|consen 1115 AVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRF 1194 (1958)
T ss_pred ccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHh
Confidence 000000000000000 0 00111232 1222223333321 1111112111
Q ss_pred hh------cCCCCCCCcccccc--cccc-chhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHH
Q 001094 870 LT------ADDNQCPTRNCKIR--LSLS-SVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALE 940 (1159)
Q Consensus 870 l~------~~~~~Cp~~~c~~~--~~~~-~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle 940 (1159)
.. .....|.. |+-. +... .++. ..+...+........+ +..-....+...-..|..+|+..+.=
T Consensus 1195 afv~ppvva~ppslra--~~ppp~~~~r~r~~~-~qlrsel~p~~~~~q~----~~~r~lqFPelrLiqyDcGKLQtLAi 1267 (1958)
T KOG0391|consen 1195 AFVIPPVVAAPPSLRA--PRPPPLYSHRMRILR-QQLRSELAPYFQQRQT----TAPRLLQFPELRLIQYDCGKLQTLAI 1267 (1958)
T ss_pred eeecccccCCChhhcC--CCCCcccchHHHHHH-HHHHHHhccccchhhc----cchhhhcCcchheeecccchHHHHHH
Confidence 11 11122221 1110 0000 0000 0000000000000000 00000011111223456778887777
Q ss_pred HHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHH
Q 001094 941 VLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLL 1020 (1159)
Q Consensus 941 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlL 1020 (1159)
+|+.+ +..|+++|||+|++.|||+|
T Consensus 1268 LLqQL-------------------------------------------------------k~eghRvLIfTQMtkmLDVL 1292 (1958)
T KOG0391|consen 1268 LLQQL-------------------------------------------------------KSEGHRVLIFTQMTKMLDVL 1292 (1958)
T ss_pred HHHHH-------------------------------------------------------HhcCceEEehhHHHHHHHHH
Confidence 77665 23799999999999999999
Q ss_pred HHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhccc
Q 001094 1021 EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100 (1159)
Q Consensus 1021 e~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRi 1100 (1159)
+.+|..+|+.|+|+||+++.++|++++++||.|..+++||+|+++||+|+|||.|++|||||.+|||+.+.||.+|+|||
T Consensus 1293 eqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRI 1372 (1958)
T KOG0391|consen 1293 EQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 1372 (1958)
T ss_pred HHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccCCCHHHHHhhhcC
Q 001094 1101 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159 (1159)
Q Consensus 1101 GQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~~~~~lt~~dL~~Lf~~ 1159 (1159)
||+|+|+|||||.+.|||+.|+.....|+.+-+-++.+.+. ...-++..+++.||.+
T Consensus 1373 GqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdf--Tt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1373 GQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDF--TTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred cCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCc--cHHHHhhhhHHHHhcC
Confidence 99999999999999999999999999999888777755432 3345778888888874
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-79 Score=697.80 Aligned_cols=546 Identities=31% Similarity=0.473 Sum_probs=394.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccc
Q 001094 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQ 466 (1159)
Q Consensus 387 ~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~ 466 (1159)
.+|+.+|+.||..|++|+......++ .||||||||||||+|+|+++++.- |+
T Consensus 562 kil~ctLKEYQlkGLnWLvnlYdqGi---NGILADeMGLGKTVQsisvlAhLa--------------E~----------- 613 (1185)
T KOG0388|consen 562 KILKCTLKEYQLKGLNWLVNLYDQGI---NGILADEMGLGKTVQSISVLAHLA--------------ET----------- 613 (1185)
T ss_pred hhhhhhhHHHhhccHHHHHHHHHccc---cceehhhhccchhHHHHHHHHHHH--------------Hh-----------
Confidence 35788999999999999999877553 499999999999999999998742 11
Q ss_pred cccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh
Q 001094 467 VNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP 546 (1159)
Q Consensus 467 ~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~ 546 (1159)
..-.+|.|||+|+|+|.+|+.||.+|+| .++++.|.|+...+..
T Consensus 614 ---------------------------------~nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRki 657 (1185)
T KOG0388|consen 614 ---------------------------------HNIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERKI 657 (1185)
T ss_pred ---------------------------------ccCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhHH
Confidence 1235789999999999999999999998 8999999998654321
Q ss_pred -----------hhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCC
Q 001094 547 -----------CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 615 (1159)
Q Consensus 547 -----------~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~ 615 (1159)
.+.+.++||||||+++..+ +
T Consensus 658 LrKfw~rKnmY~rna~fhVviTSYQlvVtD-------------e------------------------------------ 688 (1185)
T KOG0388|consen 658 LRKFWNRKNMYRRNAPFHVVITSYQLVVTD-------------E------------------------------------ 688 (1185)
T ss_pred HHHhcchhhhhccCCCceEEEEeeeeeech-------------H------------------------------------
Confidence 2346789999999998643 1
Q ss_pred CCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHH
Q 001094 616 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 695 (1159)
Q Consensus 616 ~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~ 695 (1159)
..|.++.|.++||||||.||...|.+++.+.+++++.|++||||||||+..|||.||+|++|..|++..+
T Consensus 689 ----------ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshne 758 (1185)
T KOG0388|consen 689 ----------KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNE 758 (1185)
T ss_pred ----------HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHH
Confidence 1277899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCc-------hhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHH
Q 001094 696 FCSMIKVPISKNP-------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSR 768 (1159)
Q Consensus 696 F~~~i~~pi~~~~-------~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~ 768 (1159)
|.+||..-|+... ++.+++|+.+|+||||||.|++|.. +|..|++..++|+|+..|..+|+.+.....
T Consensus 759 FseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~iS 833 (1185)
T KOG0388|consen 759 FSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSIS 833 (1185)
T ss_pred HHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHhh
Confidence 9999998886543 5668999999999999999999986 899999999999999999999998853321
Q ss_pred HHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhh----HH-H--------HHhhCcHHHHHHHHH--
Q 001094 769 DQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRS----SV-E--------MAKKLPQERQMYLLN-- 833 (1159)
Q Consensus 769 ~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~----~~-e--------~ak~l~~~~~~~ll~-- 833 (1159)
.+....++++||++||||.|+......+-+.. .. . +.-+++......++.
T Consensus 834 ---------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~ 898 (1185)
T KOG0388|consen 834 ---------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMF 898 (1185)
T ss_pred ---------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHH
Confidence 12223478899999999999876543221000 00 0 001111111111110
Q ss_pred ---HhhhccccccCC---CCCCccchh------cccCc-cchh-----hhHHhhhhcCC-----------------CCCC
Q 001094 834 ---CLEASLAICGIC---NDPPEDAVV------SICGH-VFCN-----QCICERLTADD-----------------NQCP 878 (1159)
Q Consensus 834 ---~le~~~~~C~iC---~~~~~~~~i------~~CgH-~~C~-----~Ci~~~l~~~~-----------------~~Cp 878 (1159)
..+.-..+|..- +..+..... ..-|. +|-. ..+...+.... -.|.
T Consensus 899 ~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~ 978 (1185)
T KOG0388|consen 899 RFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRH 978 (1185)
T ss_pred HHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhh
Confidence 001111112111 111100000 00110 0000 01110000000 0000
Q ss_pred Ccccccc-ccccchhhhhhhcccccCCCCCCCCCCCCCCccccc---CCcCCCcccccHHHHHHHHHHHHhcCCCCCccc
Q 001094 879 TRNCKIR-LSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE---APSCEGVWYNSSKIKAALEVLQSLAKPRGNTVT 954 (1159)
Q Consensus 879 ~~~c~~~-~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~ 954 (1159)
. .|-.+ .....+ |-.+..+.. +++.......+.. -+........|+|+..+-++|.++
T Consensus 979 ~-y~y~P~v~apPv-----LI~~ead~P---eId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kL--------- 1040 (1185)
T KOG0388|consen 979 V-YCYSPVVAAPPV-----LISNEADLP---EIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKL--------- 1040 (1185)
T ss_pred e-eeeccccCCCCe-----eeecccCCC---CCCccccCcccccceecCcHHhhhccccceeeHHHHHHHh---------
Confidence 0 00000 000000 001111100 0000000000000 122222334566666666666554
Q ss_pred ccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhCCCcEEec
Q 001094 955 NHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRL 1034 (1159)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rl 1034 (1159)
+..|++||+|.|+|.|+|+|+++|..+|++|+|+
T Consensus 1041 ----------------------------------------------kaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRL 1074 (1185)
T KOG0388|consen 1041 ----------------------------------------------KAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRL 1074 (1185)
T ss_pred ----------------------------------------------hcCCceEEehhHHHHHHHHHHHHHHhhccceEEe
Confidence 3479999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1035 DGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1035 dGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
||+....+|..+|.+|+. ++++|||+||+|||+|||||+|++|||||..|||+.+.||++|+||+|||++|+||||+++
T Consensus 1075 DGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1075 DGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCc
Q 001094 1115 NTVEDRILALQQKKREMVASAFGEDE 1140 (1159)
Q Consensus 1115 ~TIEerIl~lq~~K~~l~~~~lg~~~ 1140 (1159)
+||||+|+++...|...-.-++.+..
T Consensus 1154 gTvEEk~l~rA~qK~~vQq~Vm~G~~ 1179 (1185)
T KOG0388|consen 1154 GTVEEKVLERANQKDEVQQMVMHGNI 1179 (1185)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHcCCc
Confidence 99999999999999988777775433
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-70 Score=655.42 Aligned_cols=493 Identities=27% Similarity=0.397 Sum_probs=389.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhhcCC---CCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccc
Q 001094 386 DGVLAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 462 (1159)
Q Consensus 386 ~~~l~~~L~phQ~~gv~wMl~~e~~~~---~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 462 (1159)
+..++-.|+|||++|+.||+..-.+.. ...|||+||+||+|||+++|++|...-
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlL----------------------- 288 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLL----------------------- 288 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHH-----------------------
Confidence 335777899999999999998776652 458999999999999999999997742
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 001094 463 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 542 (1159)
Q Consensus 463 ~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r 542 (1159)
++.|. ........|||||.+|+.+|.+|+.+|... +.+..+.++|..+
T Consensus 289 -----------rq~P~--------------------~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~-~~i~~l~~~~~~~ 336 (776)
T KOG0390|consen 289 -----------RQFPQ--------------------AKPLINKPLVVAPSSLVNNWKKEFGKWLGN-HRINPLDFYSTKK 336 (776)
T ss_pred -----------HhCcC--------------------ccccccccEEEccHHHHHHHHHHHHHhccc-cccceeeeecccc
Confidence 11111 001235689999999999999999999864 4788899888776
Q ss_pred CC---------ChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCC
Q 001094 543 TK---------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 613 (1159)
Q Consensus 543 ~~---------~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~ 613 (1159)
.. .....-.+-|.+.+|++++..+.
T Consensus 337 ~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~---------------------------------------------- 370 (776)
T KOG0390|consen 337 SSWIKLKSILFLGYKQFTTPVLIISYETASDYCR---------------------------------------------- 370 (776)
T ss_pred hhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH----------------------------------------------
Confidence 41 01112245688999999974321
Q ss_pred CCCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCch
Q 001094 614 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY 693 (1159)
Q Consensus 614 ~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~ 693 (1159)
.+.....++||+||+|+.||..+.+++++.+|+..+|++|||||+||++.|+|++|.|.+|+.++..
T Consensus 371 -------------~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~ 437 (776)
T KOG0390|consen 371 -------------KILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSI 437 (776)
T ss_pred -------------HHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccch
Confidence 1455667899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCch-----------hhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHH
Q 001094 694 KSFCSMIKVPISKNPV-----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQ 762 (1159)
Q Consensus 694 ~~F~~~i~~pi~~~~~-----------~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~ 762 (1159)
..|...+..|+.+... ..++.|..+.+.|++|||.+.+.+ .||++.++++.|.+++.|+..|..
T Consensus 438 ~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~~ 512 (776)
T KOG0390|consen 438 SSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYKK 512 (776)
T ss_pred HHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHHH
Confidence 9999999999876332 236779999999999999976665 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccc
Q 001094 763 LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAIC 842 (1159)
Q Consensus 763 l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C 842 (1159)
+.... . .. ... . ..|..++.|+++|+||.|+...+.
T Consensus 513 l~~~~--~-~~-----~~~-~--~~l~~~~~L~k~cnhP~L~~~~~~--------------------------------- 548 (776)
T KOG0390|consen 513 LLDSM--K-MR-----TLK-G--YALELITKLKKLCNHPSLLLLCEK--------------------------------- 548 (776)
T ss_pred HHHHH--H-hh-----hhh-c--chhhHHHHHHHHhcCHHhhccccc---------------------------------
Confidence 86532 0 00 001 1 156778899999999998851000
Q ss_pred cCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 001094 843 GICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA 922 (1159)
Q Consensus 843 ~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1159)
|-. ++. .+....+.. .. ..
T Consensus 549 --~~~----------------------------------e~~------~~~~~~~~~------~~-------------~~ 567 (776)
T KOG0390|consen 549 --TEK----------------------------------EKA------FKNPALLLD------PG-------------KL 567 (776)
T ss_pred --ccc----------------------------------ccc------ccChHhhhc------cc-------------cc
Confidence 000 000 000000000 00 00
Q ss_pred CcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhccccccc
Q 001094 923 PSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1002 (1159)
Q Consensus 923 ~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1002 (1159)
.........+.|+..++.++....+ .
T Consensus 568 ~~~~~~~~ks~kl~~L~~ll~~~~e------------------------------------------------------k 593 (776)
T KOG0390|consen 568 KLDAGDGSKSGKLLVLVFLLEVIRE------------------------------------------------------K 593 (776)
T ss_pred ccccccchhhhHHHHHHHHHHHHhh------------------------------------------------------h
Confidence 0001111236777777777644311 1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCc-eEEEeeccccccccCccccCEEEEe
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHVLLL 1081 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~-~VLLlStkagg~GLNL~~A~~VI~l 1081 (1159)
...|+++.++|+.++|+++..++.+|+.++++||+|+..+|+.+|+.||+.++. +|||+|++|||+||||++|+|||+|
T Consensus 594 ~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~ 673 (776)
T KOG0390|consen 594 LLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILF 673 (776)
T ss_pred cceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEe
Confidence 467999999999999999999999999999999999999999999999998665 9999999999999999999999999
Q ss_pred cCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccCCCHHHHHhhhc
Q 001094 1082 DLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1158 (1159)
Q Consensus 1082 D~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~~~~~lt~~dL~~Lf~ 1158 (1159)
|+.|||+++.|||+||||.||+|+|+||||++.||+||+|+++|..|..+-..+|+.++.... ....++++.||.
T Consensus 674 D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~--~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 674 DPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEK--HFFTEDLKTLFD 748 (776)
T ss_pred CCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEeccccccc--ccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987765332 244588888885
No 13
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.6e-72 Score=662.75 Aligned_cols=460 Identities=31% Similarity=0.499 Sum_probs=382.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccc
Q 001094 383 SAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 462 (1159)
Q Consensus 383 ~~p~~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 462 (1159)
..|......+|++||+.||.||+....+.+ .||||||||||||+|+|+||.+...
T Consensus 385 ~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL---NGILADEMGLGKTIQtIsLitYLmE---------------------- 439 (1157)
T KOG0386|consen 385 KQPSSLQGGELKEYQLHGLQWMVSLYNNNL---NGILADEMGLGKTIQTISLITYLME---------------------- 439 (1157)
T ss_pred cCcchhcCCCCchhhhhhhHHHhhccCCCc---ccccchhcccchHHHHHHHHHHHHH----------------------
Confidence 445555566899999999999998877653 5899999999999999999987421
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 001094 463 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 542 (1159)
Q Consensus 463 ~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r 542 (1159)
.....+|.|||||.++|.+|..|+.+|.| .+..++|.|+..
T Consensus 440 ------------------------------------~K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp~ 480 (1157)
T KOG0386|consen 440 ------------------------------------HKQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTPQ 480 (1157)
T ss_pred ------------------------------------HcccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCHH
Confidence 11335689999999999999999999987 899999999875
Q ss_pred CCC----hhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCC
Q 001094 543 TKD----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 618 (1159)
Q Consensus 543 ~~~----~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~ 618 (1159)
.+. ....++|+|++|||+.+..+
T Consensus 481 ~R~~l~~qir~gKFnVLlTtyEyiikd----------------------------------------------------- 507 (1157)
T KOG0386|consen 481 QRSGLTKQQRHGKFNVLLTTYEYIIKD----------------------------------------------------- 507 (1157)
T ss_pred HHhhHHHHHhcccceeeeeeHHHhcCC-----------------------------------------------------
Confidence 442 22337999999999998642
Q ss_pred cccccccCCCcccceeEEEEccCcccCCchhHHHHHHH-hcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHH
Q 001094 619 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 697 (1159)
Q Consensus 619 ~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~-~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~ 697 (1159)
+..|.+|.|.++||||+|+|||..++.+..+. ...+.+|++|||||+||++.|||+||+||-|..|.+...|.
T Consensus 508 ------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~Fe 581 (1157)
T KOG0386|consen 508 ------KALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFE 581 (1157)
T ss_pred ------HHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHH
Confidence 12388999999999999999999999999988 66999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCchh----------hHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q 001094 698 SMIKVPISKNPVK----------GYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINS 767 (1159)
Q Consensus 698 ~~i~~pi~~~~~~----------~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~ 767 (1159)
.||..|+...+.+ -+.+|+.+|+||+|||.|++|.. .||.|++.+++|+||.-|+.+|..+...-
T Consensus 582 qWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~g 656 (1157)
T KOG0386|consen 582 QWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNKG 656 (1157)
T ss_pred HHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhCC
Confidence 9999999765421 26899999999999999999986 89999999999999999999999874321
Q ss_pred HHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCC
Q 001094 768 RDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICND 847 (1159)
Q Consensus 768 ~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~ 847 (1159)
.- ..+....+..+..+...++.||++||||+++...+..- ..|.+
T Consensus 657 ~l----~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~-------------------------------~~~~~ 701 (1157)
T KOG0386|consen 657 QL----LKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY-------------------------------TLHYD 701 (1157)
T ss_pred CC----CcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc-------------------------------ccccC
Confidence 10 00111223456677888999999999999985321110 00000
Q ss_pred CCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCC
Q 001094 848 PPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEG 927 (1159)
Q Consensus 848 ~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1159)
+ ..
T Consensus 702 ~-----------------------------------------------------------------------------~d 704 (1157)
T KOG0386|consen 702 I-----------------------------------------------------------------------------KD 704 (1157)
T ss_pred h-----------------------------------------------------------------------------hH
Confidence 0 01
Q ss_pred cccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceE
Q 001094 928 VWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKA 1007 (1159)
Q Consensus 928 ~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Kv 1007 (1159)
.+..++|+..+-.+|-++ +..|++|
T Consensus 705 L~R~sGKfELLDRiLPKL-------------------------------------------------------katgHRV 729 (1157)
T KOG0386|consen 705 LVRVSGKFELLDRILPKL-------------------------------------------------------KATGHRV 729 (1157)
T ss_pred HHHhccHHHHHHhhhHHH-------------------------------------------------------HhcCcch
Confidence 122356665554444433 3479999
Q ss_pred EEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcC-CCceEEEeeccccccccCccccCEEEEecCCCC
Q 001094 1008 IVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086 (1159)
Q Consensus 1008 IIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d-~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WN 1086 (1159)
+.|+|.|+++++++.+|.-.++.|+|+||++..++|..+++.||.. ..+++||+|++|||+|||||.|++||+||..||
T Consensus 730 LlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwn 809 (1157)
T KOG0386|consen 730 LLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWN 809 (1157)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCC
Confidence 9999999999999999999999999999999999999999999985 468999999999999999999999999999999
Q ss_pred cChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhC
Q 001094 1087 PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1137 (1159)
Q Consensus 1087 P~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg 1137 (1159)
|..+.||.+|+|||||+++|.|.||++-++|||+|++.+..|..+...++.
T Consensus 810 p~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviq 860 (1157)
T KOG0386|consen 810 PHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQ 860 (1157)
T ss_pred chhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhh
Confidence 999999999999999999999999999999999999999999877655543
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.5e-64 Score=589.87 Aligned_cols=596 Identities=24% Similarity=0.308 Sum_probs=385.6
Q ss_pred CCCCCcHHHHHHHHHHHHhhh------cCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccc
Q 001094 389 LAVPLLRHQRIALSWMVQKET------SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 462 (1159)
Q Consensus 389 l~~~L~phQ~~gv~wMl~~e~------~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 462 (1159)
|...|.|||..||.||+.--. ....+.|||||+=||||||+|+|+|+.....
T Consensus 665 lv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~---------------------- 722 (1567)
T KOG1015|consen 665 LVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLL---------------------- 722 (1567)
T ss_pred HHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHH----------------------
Confidence 446799999999999997332 2235689999999999999999999865210
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCC---CCcEEEEEeC
Q 001094 463 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSK---GSLSVLVYHG 539 (1159)
Q Consensus 463 ~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~---~~l~Vlvy~G 539 (1159)
| .....++.|||||.+++.+|..||.+|.+.. ..|.|.-+..
T Consensus 723 -----------------c------------------~klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~ 767 (1567)
T KOG1015|consen 723 -----------------C------------------DKLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELAT 767 (1567)
T ss_pred -----------------h------------------hccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhh
Confidence 0 0123457999999999999999999998741 2445555444
Q ss_pred CCCCCChh-h----cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCC
Q 001094 540 SSRTKDPC-E----LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 614 (1159)
Q Consensus 540 ~~r~~~~~-~----l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~ 614 (1159)
..+..+.. . ...-.|.|+.|+.++..-... ..+.+ +
T Consensus 768 vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr-------------------------~vk~r-----------k--- 808 (1567)
T KOG1015|consen 768 VKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGR-------------------------NVKSR-----------K--- 808 (1567)
T ss_pred ccChHHHHHHHHHHHhcCCEEEEehHHHHHHhccc-------------------------chhhh-----------H---
Confidence 44432221 1 234579999999997531100 00000 0
Q ss_pred CCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchH
Q 001094 615 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 694 (1159)
Q Consensus 615 ~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~ 694 (1159)
..+.....|..-+.++||+||||.|||..|.+++|+.++++++|+||||||+||+|.|.|.|+.|++++.+++++
T Consensus 809 -----~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~ 883 (1567)
T KOG1015|consen 809 -----LKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIK 883 (1567)
T ss_pred -----HHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcH
Confidence 001112236667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCch------------hhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHH
Q 001094 695 SFCSMIKVPISKNPV------------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQ 762 (1159)
Q Consensus 695 ~F~~~i~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~ 762 (1159)
+|.++|.+||+.+.. .+-..|..+|+.++-|+-...+.. .||||++.++.+.||+.|..+|+.
T Consensus 884 EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~ 958 (1567)
T KOG1015|consen 884 EFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQY 958 (1567)
T ss_pred HHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHH
Confidence 999999999988652 224568899999999988777665 899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcc---ccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhcc
Q 001094 763 LEINSRDQFKEYAAAGTVK---QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASL 839 (1159)
Q Consensus 763 l~~~~~~~~~~~~~~g~~~---~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~ 839 (1159)
..... ....+.+. ...+++|....-|+++.+||..+.-..... + .+.+.. ...
T Consensus 959 yL~h~------~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~------e-nkR~~s-----------edd 1014 (1567)
T KOG1015|consen 959 YLDHL------TGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISK------E-NKRYFS-----------EDD 1014 (1567)
T ss_pred HHhhc------cccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhh------h-hccccc-----------ccc
Confidence 75411 00111111 144677888888999999998664221110 0 000000 000
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL 919 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~ 919 (1159)
..-.||.+..++..-. -...+|..--...+..++..--. ...-+.-.+. +..... . .+.....+
T Consensus 1015 m~~fi~D~sde~e~s~-~s~d~~~~~ks~~~s~~Desss~---~~~~g~~ev~-k~k~rk-~----------r~~~~~~~ 1078 (1567)
T KOG1015|consen 1015 MDEFIADDSDETEMSL-SSDDYTKKKKSGKKSKKDESSSG---SGSDGDVEVI-KVKNRK-S----------RGGGEGNV 1078 (1567)
T ss_pred hhccccCCCccccccc-cccchhhcccccccccccccccc---cccCCchhhh-hhhhhh-c----------cccccCcc
Confidence 1112222221111000 00001110000000000000000 0000000000 000000 0 00000000
Q ss_pred ccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCC----CCccccchhhHHHHhhh
Q 001094 920 VEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGG----DTLDNISDENEKIAAKC 995 (1159)
Q Consensus 920 ~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~ 995 (1159)
.+. ..-....+.+++.++..... ..+ .++.+... .....+.-+.+++..-.
T Consensus 1079 ~~~---------g~~~D~~l~ll~dlag~~s~---~~d-------------~ppew~kd~v~e~d~~v~~~SgKmiLLle 1133 (1567)
T KOG1015|consen 1079 DET---------GNNPDVSLKLLEDLAGSSSN---PSD-------------PPPEWYKDFVTEADAEVLEHSGKMILLLE 1133 (1567)
T ss_pred ccc---------CCCcchHHHHhhcccccccC---CCC-------------CchHhHHhhhhhhhhhhhhcCcceehHHH
Confidence 000 00001112222222110000 000 00000000 00000000111111122
Q ss_pred cccccccCCceEEEEcCcHHHHHHHHHHHhh----------------------CCCcEEecCCCCCHHHHHHHHHHHhcC
Q 001094 996 SIDSIKLGGEKAIVFSQWTKMLDLLEASLKD----------------------SSIQYRRLDGTMSVFARDKAVKDFNTL 1053 (1159)
Q Consensus 996 ~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~----------------------~gi~~~rldGs~s~~~R~~~v~~F~~d 1053 (1159)
++....+-|+|+|||||....||+|+.+|.. .|..|.||||++...+|++.+.+||+.
T Consensus 1134 IL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp 1213 (1567)
T KOG1015|consen 1134 ILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDP 1213 (1567)
T ss_pred HHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCc
Confidence 2223345699999999999999999999952 267899999999999999999999986
Q ss_pred C--CceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 001094 1054 P--EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREM 1131 (1159)
Q Consensus 1054 ~--~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l 1131 (1159)
. ..+.||+||+|||+|+||.+||||||||-.|||..+.|+|-||||+||++||+||||++.||+|++||.+|..|..+
T Consensus 1214 ~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsl 1293 (1567)
T KOG1015|consen 1214 TNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSL 1293 (1567)
T ss_pred ccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhh
Confidence 4 46789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCccCccccCCCHHHHHhhhc
Q 001094 1132 VASAFGEDETGGQQTRLTVDDLNYLFM 1158 (1159)
Q Consensus 1132 ~~~~lg~~~~~~~~~~lt~~dL~~Lf~ 1158 (1159)
...++++... ...++.+||..||.
T Consensus 1294 s~RVVDeqQv---~Rhy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1294 SFRVVDEQQV---ERHYTMNELTELYT 1317 (1567)
T ss_pred hhhhhhHHHH---HHHhhHhhhHHHhh
Confidence 9999977543 35689999999985
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-63 Score=643.69 Aligned_cols=495 Identities=38% Similarity=0.575 Sum_probs=400.1
Q ss_pred CCCCCCCcHHHHHHHHHHHH-hhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccc
Q 001094 387 GVLAVPLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465 (1159)
Q Consensus 387 ~~l~~~L~phQ~~gv~wMl~-~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 465 (1159)
..+...|++||..|+.||.. ... ...|||||||||||||+|+|+++.....
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~------------------------- 384 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLE------------------------- 384 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhh-------------------------
Confidence 34567899999999999994 333 2378999999999999999999975210
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcE-EEEEeCCCCC-
Q 001094 466 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS-VLVYHGSSRT- 543 (1159)
Q Consensus 466 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~-Vlvy~G~~r~- 543 (1159)
......++.|||||.+++.+|.+|+.+|.+ .++ +.+++|....
T Consensus 385 --------------------------------~~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~ 429 (866)
T COG0553 385 --------------------------------SIKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSEL 429 (866)
T ss_pred --------------------------------cccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccc
Confidence 011124579999999999999999999887 677 9999998862
Q ss_pred ----CChhhcCC------CCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCC
Q 001094 544 ----KDPCELAK------FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 613 (1159)
Q Consensus 544 ----~~~~~l~~------~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~ 613 (1159)
.....+.+ +|+++|||+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~----------------------------------------------- 462 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFL----------------------------------------------- 462 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------------------------------------------
Confidence 12222333 899999999997521
Q ss_pred CCCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchh-cccccCCC-
Q 001094 614 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR-FLRYDPFA- 691 (1159)
Q Consensus 614 ~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~-fL~~~p~~- 691 (1159)
.....+..+.|+++|+||||+|||..|..++++..+++.+||+|||||++|++.|||+++. |+.|..++
T Consensus 463 ---------~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~ 533 (866)
T COG0553 463 ---------VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT 533 (866)
T ss_pred ---------hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc
Confidence 0012377889999999999999999999999999999999999999999999999999999 99999999
Q ss_pred chHHHHHHhccCCCCCch--------hhHHHHHHHHHHHHHHhcccc--ccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 001094 692 VYKSFCSMIKVPISKNPV--------KGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYS 761 (1159)
Q Consensus 692 ~~~~F~~~i~~pi~~~~~--------~~~~~L~~lL~~~mLRRtK~~--v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~ 761 (1159)
....|..+|..++..... ....+|+.++++|++||+|.+ +.. .||++.+.++.++++..|+.+|.
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~ 608 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYE 608 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHH
Confidence 568999999998876543 344558899999999999999 654 89999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHcCCc--cc--cHHHHHHHHHHHHHhcCccccccccC-cchhhhhHHHHHhhCcHHHHHHHHH
Q 001094 762 QLEI---NSRDQFKEYAAAGTV--KQ--NYVNILLMLLRLRQACDHPLLVKGFD-SNSLLRSSVEMAKKLPQERQMYLLN 833 (1159)
Q Consensus 762 ~l~~---~~~~~~~~~~~~g~~--~~--~~~~iL~~LlrLRq~c~hP~Lv~~~~-~~~~~~~~~e~ak~l~~~~~~~ll~ 833 (1159)
.+.. .....+......+.. .. ...+++..+++||++|+||.++.... ...
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~---------------------- 666 (866)
T COG0553 609 ALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF---------------------- 666 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc----------------------
Confidence 9987 444444443333211 11 36789999999999999999886431 100
Q ss_pred HhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCC
Q 001094 834 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD 913 (1159)
Q Consensus 834 ~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~ 913 (1159)
+..+....++
T Consensus 667 --------~~~~~~~~~~-------------------------------------------------------------- 676 (866)
T COG0553 667 --------DRIVLLLRED-------------------------------------------------------------- 676 (866)
T ss_pred --------chhhhhhhcc--------------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCcccccCCcCCCccccc-HHHHHHHHHH-HHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHH
Q 001094 914 YSDSKLVEAPSCEGVWYNS-SKIKAALEVL-QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKI 991 (1159)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~s-~Ki~~lle~L-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 991 (1159)
..........+..+ .|+..+.++| ..+.
T Consensus 677 -----~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~--------------------------------------------- 706 (866)
T COG0553 677 -----KDFDYLKKPLIQLSKGKLQALDELLLDKLL--------------------------------------------- 706 (866)
T ss_pred -----cccccccchhhhccchHHHHHHHHHHHHHH---------------------------------------------
Confidence 00000011122345 7888888877 3432
Q ss_pred HhhhcccccccCCc--eEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccc
Q 001094 992 AAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1069 (1159)
Q Consensus 992 ~~~~~~~~~~~~~~--KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~G 1069 (1159)
..+. |+|||+||+.++++|+..|+..++.+++++|+++...|+.++++|+++++..||++|++|||+|
T Consensus 707 ----------~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~g 776 (866)
T COG0553 707 ----------EEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLG 776 (866)
T ss_pred ----------hhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccc
Confidence 2455 9999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccCCC
Q 001094 1070 LNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLT 1149 (1159)
Q Consensus 1070 LNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~~~~~lt 1149 (1159)
|||+.|++||++|+||||+.+.||++|+|||||+++|.||||+++||+||+|+++|..|+.+...++++ ...+....++
T Consensus 777 lnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~ 855 (866)
T COG0553 777 LNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLS 855 (866)
T ss_pred eeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 2234567899
Q ss_pred HHHHHhhhc
Q 001094 1150 VDDLNYLFM 1158 (1159)
Q Consensus 1150 ~~dL~~Lf~ 1158 (1159)
.+|+..||.
T Consensus 856 ~~~~~~l~~ 864 (866)
T COG0553 856 IEDLLDLFS 864 (866)
T ss_pred HHHHHHHhc
Confidence 999999996
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-57 Score=523.03 Aligned_cols=581 Identities=25% Similarity=0.357 Sum_probs=387.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcC------CCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccc
Q 001094 389 LAVPLLRHQRIALSWMVQKETSS------LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 462 (1159)
Q Consensus 389 l~~~L~phQ~~gv~wMl~~e~~~------~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 462 (1159)
|+--|.|||+-|+.||......+ ..+.|||||+.||||||+|+|+++-..
T Consensus 251 la~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~dif------------------------ 306 (1387)
T KOG1016|consen 251 LAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIF------------------------ 306 (1387)
T ss_pred hHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHH------------------------
Confidence 44458999999999998743221 146899999999999999999997431
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCC--------CCCcEE
Q 001094 463 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS--------KGSLSV 534 (1159)
Q Consensus 463 ~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~--------~~~l~V 534 (1159)
....+++++|+|+|-..|.+|..|+..|+|. +..+.|
T Consensus 307 -----------------------------------lRhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~v 351 (1387)
T KOG1016|consen 307 -----------------------------------LRHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEV 351 (1387)
T ss_pred -----------------------------------hhcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEE
Confidence 1223567899999999999999999999985 235667
Q ss_pred EEEeCCCCCCCh------hhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCcc
Q 001094 535 LVYHGSSRTKDP------CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRK 608 (1159)
Q Consensus 535 lvy~G~~r~~~~------~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k 608 (1159)
+++....++-+. .....-.|+|+.|++++-...+. + .+.-++....++
T Consensus 352 f~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~------------------~--------~~~grpkkt~kr 405 (1387)
T KOG1016|consen 352 FLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKT------------------L--------PKKGRPKKTLKR 405 (1387)
T ss_pred EEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhc------------------c--------cccCCccccccc
Confidence 666654433221 11235579999999997432110 0 000000000000
Q ss_pred CCCCCCCCC-----CcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchh
Q 001094 609 GSKQKKGPD-----GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683 (1159)
Q Consensus 609 ~~~~~~~~~-----~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~ 683 (1159)
...+--+.+ ..++..+...|.+-+.++||+||+|+|||....++.|+..+++++|+.|||-|+||++-|.|.++.
T Consensus 406 ~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVD 485 (1387)
T KOG1016|consen 406 ISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVD 485 (1387)
T ss_pred cCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhe
Confidence 000000001 112345556788889999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCchHHHHHHhccCCCCCch------------hhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEec
Q 001094 684 FLRYDPFAVYKSFCSMIKVPISKNPV------------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVD 751 (1159)
Q Consensus 684 fL~~~p~~~~~~F~~~i~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ 751 (1159)
|++|..+++.++|+.+|.+||..+.- .+...|+.+|..|+-||+..-+. +.||.+.+.++.+.
T Consensus 486 FVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLvr 560 (1387)
T KOG1016|consen 486 FVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILVR 560 (1387)
T ss_pred eccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEEe
Confidence 99999999999999999999987641 12456899999999999987665 48999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHH
Q 001094 752 FTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYL 831 (1159)
Q Consensus 752 ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~l 831 (1159)
++..||++|..+.....+ +....+.. .-|-|...---.++.|||.++..+... +++..+....+
T Consensus 561 ~s~iQR~LY~~Fm~d~~r---~~~~~~~~---~~NPLkAF~vCcKIWNHPDVLY~~l~k----------~~~a~e~dl~v 624 (1387)
T KOG1016|consen 561 KSQIQRQLYRNFMLDAKR---EIAANNDA---VFNPLKAFSVCCKIWNHPDVLYRLLEK----------KKRAEEDDLRV 624 (1387)
T ss_pred HHHHHHHHHHHHHHHHHH---hhcccccc---ccChHHHHHHHHHhcCChHHHHHHHHH----------hhhhhhhhhhH
Confidence 999999999987543332 22222211 113444444455667999866432110 01111111111
Q ss_pred HHHhh-hccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCC
Q 001094 832 LNCLE-ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEI 910 (1159)
Q Consensus 832 l~~le-~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~ 910 (1159)
....- .....|+--+.++.++-.+.. +-.++.+.... +...+-..
T Consensus 625 ee~~~ag~~~~~~P~~~~~~~~s~~la--------------------------------Ss~~k~~n~t~--kp~~s~~~ 670 (1387)
T KOG1016|consen 625 EEMKFAGLQQQQSPFNSIPSNPSTPLA--------------------------------SSTSKSANKTK--KPRGSKKA 670 (1387)
T ss_pred HHHhhhcccccCCCCCCCCCCCCCccc--------------------------------chhhhhhcccC--CcccCcCC
Confidence 11000 111223222222222111000 00000000000 00000000
Q ss_pred CC-CCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhH
Q 001094 911 PT-DYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENE 989 (1159)
Q Consensus 911 ~~-~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 989 (1159)
|. +..+.++..+ + ++..+++...-. . - +.+ +..+..
T Consensus 671 p~f~ee~~e~~~y---------~---~w~~el~~nYq~---g-----v-----------Len------~pk~V~------ 707 (1387)
T KOG1016|consen 671 PKFDEEDEEVEKY---------S---DWTFELFENYQE---G-----V-----------LEN------GPKIVI------ 707 (1387)
T ss_pred CCcccccccccch---------h---hHHHHHHhhhhc---c-----c-----------ccC------CCceEE------
Confidence 10 0001111110 0 223333333200 0 0 000 000000
Q ss_pred HHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhCC------------------CcEEecCCCCCHHHHHHHHHHHh
Q 001094 990 KIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS------------------IQYRRLDGTMSVFARDKAVKDFN 1051 (1159)
Q Consensus 990 ~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~g------------------i~~~rldGs~s~~~R~~~v~~F~ 1051 (1159)
....+.....-++|+|||||-...||+|+..|.... +.|+++||.++..+|+++|++||
T Consensus 708 ---~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN 784 (1387)
T KOG1016|consen 708 ---SLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFN 784 (1387)
T ss_pred ---EEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhcc
Confidence 000011112369999999999999999999997642 45899999999999999999999
Q ss_pred cCCCce-EEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 001094 1052 TLPEVS-VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1130 (1159)
Q Consensus 1052 ~d~~~~-VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~ 1130 (1159)
..+++. .+|+|+++|..|+||..|+++|++|..|||....||++|++|+||+|+++|||||+.+|+|.+|+++|-.|..
T Consensus 785 ~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqG 864 (1387)
T KOG1016|consen 785 SEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQG 864 (1387)
T ss_pred CCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhcc
Confidence 988876 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCccCccccCCCHHHHHhhhc
Q 001094 1131 MVASAFGEDETGGQQTRLTVDDLNYLFM 1158 (1159)
Q Consensus 1131 l~~~~lg~~~~~~~~~~lt~~dL~~Lf~ 1158 (1159)
|.+.++++- .....+|..||.-|.+
T Consensus 865 msdRvVDd~---np~an~s~Ke~enLl~ 889 (1387)
T KOG1016|consen 865 MSDRVVDDA---NPDANISQKELENLLM 889 (1387)
T ss_pred chhhhhccc---CccccccHHHHHHHhh
Confidence 999999764 3456788888887764
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-55 Score=488.65 Aligned_cols=419 Identities=29% Similarity=0.348 Sum_probs=323.5
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccc
Q 001094 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 468 (1159)
Q Consensus 389 l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 468 (1159)
|--.|+|+|++||.+.+.+- +..|||||||||||+||||+....|.
T Consensus 195 Lvs~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyra---------------------------- 240 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYRA---------------------------- 240 (689)
T ss_pred HHHhhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHhh----------------------------
Confidence 44569999999999999741 23799999999999999999877542
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhh
Q 001094 469 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 548 (1159)
Q Consensus 469 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~ 548 (1159)
..|.|||||++|...|++++.+|+|.-. .+.+..+..... +.-
T Consensus 241 ----------------------------------EwplliVcPAsvrftWa~al~r~lps~~--pi~vv~~~~D~~-~~~ 283 (689)
T KOG1000|consen 241 ----------------------------------EWPLLIVCPASVRFTWAKALNRFLPSIH--PIFVVDKSSDPL-PDV 283 (689)
T ss_pred ----------------------------------cCcEEEEecHHHhHHHHHHHHHhccccc--ceEEEecccCCc-ccc
Confidence 2358999999999999999999998543 244433332111 111
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
...-.|+|+||+.+...- ..|
T Consensus 284 ~t~~~v~ivSye~ls~l~-----------------------------------------------------------~~l 304 (689)
T KOG1000|consen 284 CTSNTVAIVSYEQLSLLH-----------------------------------------------------------DIL 304 (689)
T ss_pred ccCCeEEEEEHHHHHHHH-----------------------------------------------------------HHH
Confidence 233469999999997420 114
Q ss_pred cccceeEEEEccCcccCCchhHHHHHHHhc--ccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhccCCCC
Q 001094 629 AKVGWFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 706 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~~S~~~ral~~L--~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~~pi~~ 706 (1159)
..-.|..||+||+|++|+.++++++++..+ .+++.++|||||--.++.|||.+++.+++-.|.++.+|-.+|+.-..-
T Consensus 305 ~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~v 384 (689)
T KOG1000|consen 305 KKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQV 384 (689)
T ss_pred hcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccc
Confidence 455699999999999999999999999877 799999999999999999999999999999999999999888754321
Q ss_pred ------CchhhHHHHHHHHH-HHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001094 707 ------NPVKGYKKLQAVLK-TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGT 779 (1159)
Q Consensus 707 ------~~~~~~~~L~~lL~-~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~ 779 (1159)
....+..+|..+|. .+|+||+|.+|+. .||||..+++.+ ....+-+.-..+... ..+ ++
T Consensus 385 r~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv~~-~~gr~da~~~~lv~~-------a~~-~t 450 (689)
T KOG1000|consen 385 RFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVVYV-SGGRIDARMDDLVKA-------AAD-YT 450 (689)
T ss_pred ceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEEEE-cCCccchHHHHHHHH-------hhh-cc
Confidence 22345778888875 6799999999997 899996665554 333332222222211 111 11
Q ss_pred ccc-cHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccC
Q 001094 780 VKQ-NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 858 (1159)
Q Consensus 780 ~~~-~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~Cg 858 (1159)
... .-.+-..+++..++
T Consensus 451 ~~~~~e~~~~~l~l~y~~-------------------------------------------------------------- 468 (689)
T KOG1000|consen 451 KVNSMERKHESLLLFYSL-------------------------------------------------------------- 468 (689)
T ss_pred hhhhhhhhhHHHHHHHHH--------------------------------------------------------------
Confidence 000 00000000111110
Q ss_pred ccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHH
Q 001094 859 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 938 (1159)
Q Consensus 859 H~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~l 938 (1159)
..-.|+.++
T Consensus 469 -----------------------------------------------------------------------tgiaK~~av 477 (689)
T KOG1000|consen 469 -----------------------------------------------------------------------TGIAKAAAV 477 (689)
T ss_pred -----------------------------------------------------------------------hcccccHHH
Confidence 013456666
Q ss_pred HHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHH
Q 001094 939 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1018 (1159)
Q Consensus 939 le~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~Ld 1018 (1159)
.+.|....- -...++.|++||+.+..+||
T Consensus 478 ~eyi~~~~~---------------------------------------------------l~d~~~~KflVFaHH~~vLd 506 (689)
T KOG1000|consen 478 CEYILENYF---------------------------------------------------LPDAPPRKFLVFAHHQIVLD 506 (689)
T ss_pred HHHHHhCcc---------------------------------------------------cccCCCceEEEEehhHHHHH
Confidence 666544200 01137899999999999999
Q ss_pred HHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhc
Q 001094 1019 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1098 (1159)
Q Consensus 1019 lLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~h 1098 (1159)
-|+..+.+.++.++||||+++...|+.+++.|+.+.+++|-|+|..|+|+||+|++|+.|+|.+++|||....||.||+|
T Consensus 507 ~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaH 586 (689)
T KOG1000|consen 507 TIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAH 586 (689)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Q 001094 1099 RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1135 (1159)
Q Consensus 1099 RiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~ 1135 (1159)
|+|||..|.|++|++++|+||.++.+.+.|...+.++
T Consensus 587 RiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 587 RIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred hccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999987765
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.2e-53 Score=532.06 Aligned_cols=420 Identities=20% Similarity=0.288 Sum_probs=314.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccc
Q 001094 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 468 (1159)
Q Consensus 389 l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 468 (1159)
..+.|+|||...+.+++.+. ....|||||||||||++|++++...
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~-----~~R~LLADEvGLGKTIeAglil~~l------------------------------ 193 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRH-----APRVLLADEVGLGKTIEAGMIIHQQ------------------------------ 193 (956)
T ss_pred CCCCCCHHHHHHHHHHhhcc-----CCCEEEEeCCcCcHHHHHHHHHHHH------------------------------
Confidence 45779999999998887653 2457999999999999998777542
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCC----C
Q 001094 469 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 544 (1159)
Q Consensus 469 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~----~ 544 (1159)
...+..+++|||||++|+.||..|+.+++. +.+.++.+..-. .
T Consensus 194 -----------------------------~~~g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~ 240 (956)
T PRK04914 194 -----------------------------LLTGRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHD 240 (956)
T ss_pred -----------------------------HHcCCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccc
Confidence 111345679999999999999999998874 566666654311 1
Q ss_pred ChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccc
Q 001094 545 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 624 (1159)
Q Consensus 545 ~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~ 624 (1159)
....+..+++||+||+.+...- +.
T Consensus 241 ~~~pf~~~~~vI~S~~~l~~~~---------~~----------------------------------------------- 264 (956)
T PRK04914 241 ADNPFETEQLVICSLDFLRRNK---------QR----------------------------------------------- 264 (956)
T ss_pred ccCccccCcEEEEEHHHhhhCH---------HH-----------------------------------------------
Confidence 1133457899999999997520 00
Q ss_pred cCCCcccceeEEEEccCcccCCc---hhHHHHHHHhc--ccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHH
Q 001094 625 AGPLAKVGWFRVVLDEAQSIKNH---RTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 699 (1159)
Q Consensus 625 ~~~L~~i~w~rVIlDEAH~IKN~---~S~~~ral~~L--~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~ 699 (1159)
...+....|++||+||||+++|. .|+.++++..| ++.++++|||||++|++.|+|++|+||+|+.|.++..|...
T Consensus 265 ~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e 344 (956)
T PRK04914 265 LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEE 344 (956)
T ss_pred HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHH
Confidence 01144568999999999999953 56778888888 67899999999999999999999999999999999999764
Q ss_pred hcc--CC--------CCC--chhhHHHH---------------------------HHHHH---------HHHHHhccccc
Q 001094 700 IKV--PI--------SKN--PVKGYKKL---------------------------QAVLK---------TIMLRRTKGTL 731 (1159)
Q Consensus 700 i~~--pi--------~~~--~~~~~~~L---------------------------~~lL~---------~~mLRRtK~~v 731 (1159)
... |+ ... .......| ..+++ .+|+|+++.++
T Consensus 345 ~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v 424 (956)
T PRK04914 345 QQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAV 424 (956)
T ss_pred HHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhh
Confidence 321 10 000 00111111 12222 46778888887
Q ss_pred cCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcch
Q 001094 732 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 811 (1159)
Q Consensus 732 ~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~ 811 (1159)
. .+|++..+.+.+++++..+..+... . ..++++ +.+|..+..
T Consensus 425 ~------~fp~R~~~~~~l~~~~~y~~~~~~~-------~-------------------~~~~~~-~l~pe~~~~----- 466 (956)
T PRK04914 425 K------GFPKRELHPIPLPLPEQYQTAIKVS-------L-------------------EARARD-MLYPEQIYQ----- 466 (956)
T ss_pred c------CCCcCceeEeecCCCHHHHHHHHHh-------H-------------------HHHHHh-hcCHHHHHH-----
Confidence 5 6899999999999977544433210 0 001112 112210000
Q ss_pred hhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccch
Q 001094 812 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 812 ~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~v 891 (1159)
. ++.
T Consensus 467 ---~-------------------~~~------------------------------------------------------ 470 (956)
T PRK04914 467 ---E-------------------FED------------------------------------------------------ 470 (956)
T ss_pred ---H-------------------Hhh------------------------------------------------------
Confidence 0 000
Q ss_pred hhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCC
Q 001094 892 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 971 (1159)
Q Consensus 892 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1159)
....+..++|++.++++|+..
T Consensus 471 ---------------------------------~~~~~~~d~Ki~~L~~~L~~~-------------------------- 491 (956)
T PRK04914 471 ---------------------------------NATWWNFDPRVEWLIDFLKSH-------------------------- 491 (956)
T ss_pred ---------------------------------hhhccccCHHHHHHHHHHHhc--------------------------
Confidence 000112368999999888654
Q ss_pred CCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHH-hhCCCcEEecCCCCCHHHHHHHHHHH
Q 001094 972 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDF 1050 (1159)
Q Consensus 972 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L-~~~gi~~~rldGs~s~~~R~~~v~~F 1050 (1159)
.++|+|||+++..+++.|+..| ...|+++..|+|+|+..+|+++++.|
T Consensus 492 -------------------------------~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 492 -------------------------------RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred -------------------------------CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 4789999999999999999999 56799999999999999999999999
Q ss_pred hcC-CCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 001094 1051 NTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1129 (1159)
Q Consensus 1051 ~~d-~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~ 1129 (1159)
++. ++++|||+ +.+||+|+||+.|++||+||+||||..++|||||+||+||+++|.||+++.++|+|++|+++...|.
T Consensus 541 ~~~~~~~~VLIs-TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 541 ADEEDGAQVLLC-SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hcCCCCccEEEe-chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 985 36788775 5999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhC
Q 001094 1130 EMVASAFG 1137 (1159)
Q Consensus 1130 ~l~~~~lg 1137 (1159)
.+++..++
T Consensus 620 ~ife~~~~ 627 (956)
T PRK04914 620 NAFEHTCP 627 (956)
T ss_pred CceeccCC
Confidence 76655554
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1e-51 Score=501.72 Aligned_cols=258 Identities=33% Similarity=0.578 Sum_probs=200.3
Q ss_pred CCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC--ChhhcCCCCEEEechhhHhhccCCCCCCCchhHHH
Q 001094 502 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEE 579 (1159)
Q Consensus 502 p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~--~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e 579 (1159)
-.|+||||||.+++.||-+||.+|++. .++|+.|.|....- .+.++.+||||+|||++|+.|+.... +
T Consensus 419 ~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte----~---- 488 (1394)
T KOG0298|consen 419 ETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTE----D---- 488 (1394)
T ss_pred ecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhccc----c----
Confidence 357999999999999999999999873 47999999987553 56788999999999999998865420 0
Q ss_pred HhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcc
Q 001094 580 KMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR 659 (1159)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~ 659 (1159)
. +..|..+..++.+ .+.+||..+.||||||||||.+....|..++++..|.
T Consensus 489 --------~---------------~~~R~lR~qsr~~------~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 489 --------F---------------GSDRQLRHQSRYM------RPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLH 539 (1394)
T ss_pred --------c---------------CChhhhhcccCCC------CCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhh
Confidence 0 0000000111111 2357899999999999999999999999999999999
Q ss_pred cCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhccCCCCCchhhHHHHHHHHHHHHHHhccccccCCCCccC
Q 001094 660 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 739 (1159)
Q Consensus 660 a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~~pi~~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~ 739 (1159)
+.+|||.||||||+ ++|||++|.||+..||+....|...+..++... .....+.++++..+.|+.|-.+.+. +.
T Consensus 540 ~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~e---l~ 613 (1394)
T KOG0298|consen 540 AINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHE---LG 613 (1394)
T ss_pred hhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHH---hC
Confidence 99999999999999 999999999999999999999999887776654 4455688999999999999888653 67
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHH----HHHHHHHHHHHHH---------cCCccccHHHHHHHHHHHHHhcCccccc
Q 001094 740 LPPKVIMLKQVDFTDEERDFYSQL----EINSRDQFKEYAA---------AGTVKQNYVNILLMLLRLRQACDHPLLV 804 (1159)
Q Consensus 740 LPpk~~~vv~v~ls~~Er~~Y~~l----~~~~~~~~~~~~~---------~g~~~~~~~~iL~~LlrLRq~c~hP~Lv 804 (1159)
+||..+.+....+++.+-.+|... ..+.+..+..... ++......+.++..++||||+|+||..-
T Consensus 614 ~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 614 LPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred CCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHHHhhcccccc
Confidence 999988888888888777776644 3333333322221 1112234567889999999999999654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=7e-44 Score=404.55 Aligned_cols=291 Identities=40% Similarity=0.660 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHhh------hcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccc
Q 001094 396 HQRIALSWMVQKE------TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 469 (1159)
Q Consensus 396 hQ~~gv~wMl~~e------~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 469 (1159)
||+.||.||+.++ ......+|||||||||+|||+++|+++.....
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~----------------------------- 51 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKN----------------------------- 51 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHH-----------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhh-----------------------------
Confidence 8999999999998 11123489999999999999999999974210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCC--CCCChh
Q 001094 470 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPC 547 (1159)
Q Consensus 470 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~--r~~~~~ 547 (1159)
.......+++|||||.+++.||..|+.+|+.+ +.+++++|+|.. +.....
T Consensus 52 ---------------------------~~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 52 ---------------------------EFPQRGEKKTLIVVPSSLLSQWKEEIEKWFDP-DSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp ---------------------------CCTTSS-S-EEEEE-TTTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSS
T ss_pred ---------------------------ccccccccceeEeeccchhhhhhhhhcccccc-cccccccccccccccccccc
Confidence 00111223599999999999999999999853 268999999987 333445
Q ss_pred hcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCC
Q 001094 548 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627 (1159)
Q Consensus 548 ~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~ 627 (1159)
....++++|+||+++...... .....
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~------------------------------------------------------~~~~~ 129 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKK------------------------------------------------------KDKED 129 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TST------------------------------------------------------HTTHH
T ss_pred ccccceeeecccccccccccc------------------------------------------------------ccccc
Confidence 568899999999999711000 00122
Q ss_pred CcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhccCCCCC
Q 001094 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 707 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~~pi~~~ 707 (1159)
+..++|++||+||||.+||..+..++++..|++.+||+|||||++|++.|||++++||.++++.+...|.+.+..+....
T Consensus 130 l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~ 209 (299)
T PF00176_consen 130 LKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKEN 209 (299)
T ss_dssp HHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTH
T ss_pred cccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhcccc
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999886653344
Q ss_pred chhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHH
Q 001094 708 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 787 (1159)
Q Consensus 708 ~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~i 787 (1159)
......+|+.+++.+++||++.++.. .||++.+.++.++|+++|+++|+.+....+..+.... +........+
T Consensus 210 ~~~~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~ 282 (299)
T PF00176_consen 210 SYENIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSL 282 (299)
T ss_dssp HHHHHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHH
T ss_pred ccccccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHH
Confidence 45668899999999999999999843 7999999999999999999999988765554433322 2345678899
Q ss_pred HHHHHHHHHhcCccccc
Q 001094 788 LLMLLRLRQACDHPLLV 804 (1159)
Q Consensus 788 L~~LlrLRq~c~hP~Lv 804 (1159)
+..+.+|||+|+||.|+
T Consensus 283 ~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 283 LQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHHHHH-THHC
T ss_pred HHHHHHHHHHhCCcccC
Confidence 99999999999999875
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=8.4e-40 Score=391.63 Aligned_cols=378 Identities=27% Similarity=0.448 Sum_probs=293.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
..|.+||.+|++|+......+. -+|||||||||||+++|+++.....
T Consensus 294 g~L~~~qleGln~L~~~ws~~~---~~ilADEmgLgktVqsi~fl~sl~~------------------------------ 340 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGV---DAILADEMGLGKTVQSIVFLYSLPK------------------------------ 340 (696)
T ss_pred ccccccchhhhhhhhcccccCC---CcccchhhcCCceeeEEEEEeeccc------------------------------
Confidence 5699999999999998776543 3899999999999999988754211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhh--
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-- 548 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~-- 548 (1159)
.....+|.||++|.+.+.+|.+|+..|.+ .+.+..|+|....+....
T Consensus 341 ----------------------------~~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirep 389 (696)
T KOG0383|consen 341 ----------------------------EIHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREP 389 (696)
T ss_pred ----------------------------ccCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhcc
Confidence 11223578999999999999999999987 788999999765432111
Q ss_pred ----------------------cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCC
Q 001094 549 ----------------------LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSD 606 (1159)
Q Consensus 549 ----------------------l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~ 606 (1159)
-.++.|.+++|++.
T Consensus 390 e~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~-------------------------------------------- 425 (696)
T KOG0383|consen 390 EFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETI-------------------------------------------- 425 (696)
T ss_pred cccccccccccCCccccccchhhcccccCCCchhhc--------------------------------------------
Confidence 01122222222222
Q ss_pred ccCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhccc
Q 001094 607 RKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLR 686 (1159)
Q Consensus 607 ~k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~ 686 (1159)
+...+.+..+.|..+|+||+|++||..+...+.+......++++|||||.+|++.+|+++|+||.
T Consensus 426 ---------------~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt 490 (696)
T KOG0383|consen 426 ---------------EIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLT 490 (696)
T ss_pred ---------------ccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccC
Confidence 12234588999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHhccCCCCCchhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 001094 687 YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 766 (1159)
Q Consensus 687 ~~p~~~~~~F~~~i~~pi~~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~ 766 (1159)
++.|.+...|.+.|..- ......+.|+.++.+.|+||.|.++++ ..|+|++-++.++|++-|++.|+.++.+
T Consensus 491 ~~~~~~~~~f~e~~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~ 562 (696)
T KOG0383|consen 491 PGRFNSLEWFLEEFHDI---SCEEQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTR 562 (696)
T ss_pred cccccchhhhhhhcchh---hHHHHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcC
Confidence 99999999998877532 235668889999999999999999997 6899999999999999999999998765
Q ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCC
Q 001094 767 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 846 (1159)
Q Consensus 767 ~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~ 846 (1159)
.-..+.. | .+....+..++.||+.|+||++...... ....... +.+
T Consensus 563 n~~~l~~----~---~~~~s~~n~~mel~K~~~hpy~~~~~e~--~~~~~~~------------~~~------------- 608 (696)
T KOG0383|consen 563 NWQGLLA----G---VHQYSLLNIVMELRKQCNHPYLSPLEEP--LEENGEY------------LGS------------- 608 (696)
T ss_pred ChHHHhh----c---chhHHHHHHHHHHHHhhcCcccCccccc--cccchHH------------HHH-------------
Confidence 4433322 2 2444566778999999999998864110 0000000 000
Q ss_pred CCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCC
Q 001094 847 DPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCE 926 (1159)
Q Consensus 847 ~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1159)
T Consensus 609 -------------------------------------------------------------------------------- 608 (696)
T KOG0383|consen 609 -------------------------------------------------------------------------------- 608 (696)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCce
Q 001094 927 GVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1006 (1159)
Q Consensus 927 ~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~K 1006 (1159)
.....+.|+..+...+++ ++..++|
T Consensus 609 ~l~k~~~k~~~l~~~~~~-------------------------------------------------------l~~~ghr 633 (696)
T KOG0383|consen 609 ALIKASGKLTLLLKMLKK-------------------------------------------------------LKSSGHR 633 (696)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------------------------------------------HHhcchh
Confidence 000013344433333333 3348999
Q ss_pred EEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcC-CCceEEEeeccccccc
Q 001094 1007 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLG 1069 (1159)
Q Consensus 1007 vIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d-~~~~VLLlStkagg~G 1069 (1159)
|+||+|++.|+|+|++++...+ .|.|+||..+...|++++++||.. ..-++||+|++|||+|
T Consensus 634 vl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 634 VLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999 999999999999999999999964 5678999999999998
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.2e-35 Score=356.06 Aligned_cols=355 Identities=19% Similarity=0.240 Sum_probs=252.7
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccc
Q 001094 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 469 (1159)
Q Consensus 390 ~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 469 (1159)
.+.|||||.+|+.||+... ..++|||...||+|||+++|+++...
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g----r~r~GIIvLPtGaGKTlvai~aa~~l------------------------------- 297 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG----RARSGIIVLPCGAGKSLVGVTAACTV------------------------------- 297 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC----CCCCcEEEeCCCCChHHHHHHHHHHh-------------------------------
Confidence 4679999999999997421 23679999999999999999887541
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhh
Q 001094 470 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 548 (1159)
Q Consensus 470 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~ 548 (1159)
.++||||||.. ++.||.+||.+|+... ...+..|.|..+...
T Consensus 298 ---------------------------------~k~tLILvps~~Lv~QW~~ef~~~~~l~-~~~I~~~tg~~k~~~--- 340 (732)
T TIGR00603 298 ---------------------------------KKSCLVLCTSAVSVEQWKQQFKMWSTID-DSQICRFTSDAKERF--- 340 (732)
T ss_pred ---------------------------------CCCEEEEeCcHHHHHHHHHHHHHhcCCC-CceEEEEecCccccc---
Confidence 13599999988 5899999999997532 456778888654322
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
....+|+|+||+++.....+.. +. . .....+
T Consensus 341 ~~~~~VvVtTYq~l~~~~~r~~-----~~-~-------------------------------------------~~l~~l 371 (732)
T TIGR00603 341 HGEAGVVVSTYSMVAHTGKRSY-----ES-E-------------------------------------------KVMEWL 371 (732)
T ss_pred ccCCcEEEEEHHHhhcccccch-----hh-h-------------------------------------------HHHHHh
Confidence 2457899999999975321100 00 0 000124
Q ss_pred cccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcc-cccCCCchHHHHHHhccCCCCC
Q 001094 629 AKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFL-RYDPFAVYKSFCSMIKVPISKN 707 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL-~~~p~~~~~~F~~~i~~pi~~~ 707 (1159)
....|++||+||||++.+ ....+.+..+.+.+||+|||||+++. +.+..+.+| .|..|.. .|.+.+
T Consensus 372 ~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~eLi------- 438 (732)
T TIGR00603 372 TNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMELQ------- 438 (732)
T ss_pred ccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHHHHH-------
Confidence 456899999999999964 33445666789999999999999875 333334433 3332211 111111
Q ss_pred chhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHH
Q 001094 708 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 787 (1159)
Q Consensus 708 ~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~i 787 (1159)
..| -|.+.....+.|+|++++...|-.. .. . .
T Consensus 439 ------------------------~~G----~LA~~~~~ev~v~~t~~~~~~yl~~--------------~~-~---~-- 470 (732)
T TIGR00603 439 ------------------------KKG----FIANVQCAEVWCPMTPEFYREYLRE--------------NS-R---K-- 470 (732)
T ss_pred ------------------------hCC----ccccceEEEEEecCCHHHHHHHHHh--------------cc-h---h--
Confidence 012 4566666778999998764444221 00 0 0
Q ss_pred HHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhhHH
Q 001094 788 LLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCIC 867 (1159)
Q Consensus 788 L~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~ 867 (1159)
+.+.++
T Consensus 471 -----k~~l~~--------------------------------------------------------------------- 476 (732)
T TIGR00603 471 -----RMLLYV--------------------------------------------------------------------- 476 (732)
T ss_pred -----hhHHhh---------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcC
Q 001094 868 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAK 947 (1159)
Q Consensus 868 ~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~ 947 (1159)
....|+.++..+++.+.
T Consensus 477 --------------------------------------------------------------~np~K~~~~~~Li~~he- 493 (732)
T TIGR00603 477 --------------------------------------------------------------MNPNKFRACQFLIRFHE- 493 (732)
T ss_pred --------------------------------------------------------------hChHHHHHHHHHHHHHh-
Confidence 01346666666655431
Q ss_pred CCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhC
Q 001094 948 PRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS 1027 (1159)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~ 1027 (1159)
..++|+|||++++..++.+...|.
T Consensus 494 ------------------------------------------------------~~g~kiLVF~~~~~~l~~~a~~L~-- 517 (732)
T TIGR00603 494 ------------------------------------------------------QRGDKIIVFSDNVFALKEYAIKLG-- 517 (732)
T ss_pred ------------------------------------------------------hcCCeEEEEeCCHHHHHHHHHHcC--
Confidence 168899999999999888888773
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCC-CcChhhHHhhhhcccCCCCc-
Q 001094 1028 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRP- 1105 (1159)
Q Consensus 1028 gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~W-NP~~e~QAigR~hRiGQtk~- 1105 (1159)
.+ .++|.|+..+|.+++++|+..+.+.+|++| ++|++|+||..|++||++++++ ++..+.||+||+.|.+..+.
T Consensus 518 -~~--~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~ 593 (732)
T TIGR00603 518 -KP--FIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDA 593 (732)
T ss_pred -Cc--eEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcc
Confidence 33 489999999999999999976688888877 9999999999999999999986 99999999999999987653
Q ss_pred ----EEEEEEEeCCCHHHHHHH
Q 001094 1106 ----VSVLRLTVKNTVEDRILA 1123 (1159)
Q Consensus 1106 ----V~V~rLv~~~TIEerIl~ 1123 (1159)
.++|.|++++|.|+..-.
T Consensus 594 ~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 594 EEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred ccccceEEEEecCCchHHHHHH
Confidence 799999999999987754
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.5e-30 Score=330.76 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=112.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCC--------CCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT--------MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs--------~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~ 1074 (1159)
++.|+|||+++..+++.|...|...|+++.+++|. |+..+|.+++.+|++ +.+.||+ +|.++++|+|++.
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~vLv-aT~~~~eGldi~~ 441 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFNVLV-STSVAEEGLDIPS 441 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcCCCccc
Confidence 67899999999999999999999999999999987 889999999999998 6778877 5589999999999
Q ss_pred cCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 001094 1075 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~ 1132 (1159)
+++||+|||+|||....|++||++|.|+ +.||.|+.++|+||.++....+|.+.+
T Consensus 442 ~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 442 VDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9999999999999999998888888765 778999999999999887776665544
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=5.1e-23 Score=234.44 Aligned_cols=464 Identities=17% Similarity=0.177 Sum_probs=285.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
+.-|.||..-++-.+.+ ..+++-.+|||||+.|+.+|+..-.
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~------------------------------ 55 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLR------------------------------ 55 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHH------------------------------
Confidence 45678999888777753 3699999999999999777764210
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh-hh
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CE 548 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~ 548 (1159)
.-.+..|+++|+- |+.|-.+-+.+.+.. +.-.+..+.|.-+.... ..
T Consensus 56 ------------------------------~~~~kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 56 ------------------------------WFGGKVLFLAPTKPLVLQHAEFCRKVTGI-PEDEIAALTGEVRPEEREEL 104 (542)
T ss_pred ------------------------------hcCCeEEEecCCchHHHHHHHHHHHHhCC-ChhheeeecCCCChHHHHHH
Confidence 0112589999996 889998888887653 36788999998776543 45
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
+.+..|++.|-+++.+++.. +.+
T Consensus 105 w~~~kVfvaTPQvveNDl~~---------------------------------------------------------Gri 127 (542)
T COG1111 105 WAKKKVFVATPQVVENDLKA---------------------------------------------------------GRI 127 (542)
T ss_pred HhhCCEEEeccHHHHhHHhc---------------------------------------------------------Ccc
Confidence 67899999999999876421 224
Q ss_pred cccceeEEEEccCcccCCchhHHHHHH--HhcccC-cEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhccCCC
Q 001094 629 AKVGWFRVVLDEAQSIKNHRTQVARAC--WGLRAK-RRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 705 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~~S~~~ral--~~L~a~-~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~~pi~ 705 (1159)
..-.+.+||+||||+.-+..+.++-|- ..-..+ +.++|||||-. +.+.+...+.-|..+..
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs-~~ekI~eV~~nLgIe~v--------------- 191 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGS-DLEKIQEVVENLGIEKV--------------- 191 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCC-CHHHHHHHHHhCCcceE---------------
Confidence 444577899999999866555444433 222333 57899999943 33444443433332211
Q ss_pred CCchhhHHHHHHHHHHHHHHhccc-cccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccH
Q 001094 706 KNPVKGYKKLQAVLKTIMLRRTKG-TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 784 (1159)
Q Consensus 706 ~~~~~~~~~L~~lL~~~mLRRtK~-~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~ 784 (1159)
.+|...+ ||.. .+..+.++.+.++++++=.+.-+.+.......++.+.+.|-.....
T Consensus 192 -----------------evrTE~d~DV~~-----Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 192 -----------------EVRTEEDPDVRP-----YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred -----------------EEecCCCccHHH-----hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 1111111 1211 3456678888899998887777777666666777766666543322
Q ss_pred ----HHHHHHH-HHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCc
Q 001094 785 ----VNILLML-LRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGH 859 (1159)
Q Consensus 785 ----~~iL~~L-lrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH 859 (1159)
..++... .++..+.+ . +...++-..-.+..+.-....+++. ... +.+. +
T Consensus 250 ~~~~kdl~~~~~~~~~~a~~-------~-~~~~~~~l~~~a~~~kl~~a~elle---tqG--------------i~~~-~ 303 (542)
T COG1111 250 PVSKKDLLELRQIRLIMAKN-------E-DSDKFRLLSVLAEAIKLAHALELLE---TQG--------------IRPF-Y 303 (542)
T ss_pred cccHhHHHHHHHHHHHhccC-------c-cHHHHHHHHHHHHHHHHHHHHHHHH---hhC--------------hHHH-H
Confidence 2222222 12211111 0 1111111000000000000111110 000 0000 0
Q ss_pred cchhhhHHhhhhcCCCCCCCccccccccccchhhhh-hhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHH
Q 001094 860 VFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKA-TLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 938 (1159)
Q Consensus 860 ~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~l 938 (1159)
.+=.+|-.+--.+ .......+-.+..|.+. .+.- .........+|+..+
T Consensus 304 ~Yl~~l~e~~~~~------~sk~a~~l~~d~~~~~al~~~~------------------------~~~~~~v~HPKl~~l 353 (542)
T COG1111 304 QYLEKLEEEATKG------GSKAAKSLLADPYFKRALRLLI------------------------RADESGVEHPKLEKL 353 (542)
T ss_pred HHHHHHHHHhccc------chHHHHHHhcChhhHHHHHHHH------------------------HhccccCCCccHHHH
Confidence 0000000000000 00000000011111111 0000 001223457899999
Q ss_pred HHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHH
Q 001094 939 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1018 (1159)
Q Consensus 939 le~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~Ld 1018 (1159)
.+++++..+ +.++.++|||++|+.+++
T Consensus 354 ~eilke~~~-----------------------------------------------------k~~~~RvIVFT~yRdTae 380 (542)
T COG1111 354 REILKEQLE-----------------------------------------------------KNGDSRVIVFTEYRDTAE 380 (542)
T ss_pred HHHHHHHHh-----------------------------------------------------cCCCceEEEEehhHhHHH
Confidence 998887643 126789999999999999
Q ss_pred HHHHHHhhCCCcEE-ecCC--------CCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcCh
Q 001094 1019 LLEASLKDSSIQYR-RLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1089 (1159)
Q Consensus 1019 lLe~~L~~~gi~~~-rldG--------s~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~ 1089 (1159)
.|..+|...++... ++-| +|++++..+++++|+. +++.||+ +|..|-+||++...+-||+|||.=+|-+
T Consensus 381 ~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-Ge~nVLV-aTSVgEEGLDIp~vDlVifYEpvpSeIR 458 (542)
T COG1111 381 EIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-GEYNVLV-ATSVGEEGLDIPEVDLVIFYEPVPSEIR 458 (542)
T ss_pred HHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-CCceEEE-EcccccccCCCCcccEEEEecCCcHHHH
Confidence 99999999888764 5544 5999999999999999 8899988 6699999999999999999999999999
Q ss_pred hhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 001094 1090 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132 (1159)
Q Consensus 1090 e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~ 1132 (1159)
..||.||.+|- +.=.||-|+++||-|+--+....+|.+.+
T Consensus 459 ~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m 498 (542)
T COG1111 459 SIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKM 498 (542)
T ss_pred HHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 99999998884 66788889999999987777777665544
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.92 E-value=7.2e-23 Score=248.71 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=103.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+..+..++.|...|...|+++..++|+|+.++|.++++.|++ +...|||+|.+..|+|+++...++||++.
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEec
Confidence 56789999999999999999999999999999999999999999999986 67789998889999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCc-EEEEEEEeCCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRP-VSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~-V~V~rLv~~~T 1116 (1159)
|.-+.....|++||++|.|..|+ +.||.++-.-.
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999988765 89998886443
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=1.6e-22 Score=241.34 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=107.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.+++||+.....++.+...+...|+ ...++|.++..+|+++++.|... +..+|+ +.+.+++|+++..|+.+|++.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g-~~~~lv-~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTG-GIKVLV-TVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcC-CCCEEE-EeeeccceecCCCCcEEEEeC
Confidence 378999999999999999999999988 88999999999999999999994 466665 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhccc-CCCCc--EEEEEEEeCCCHHHHHHHHHHH
Q 001094 1083 LWWNPTTEDQAIDRAHRI-GQTRP--VSVLRLTVKNTVEDRILALQQK 1127 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRi-GQtk~--V~V~rLv~~~TIEerIl~lq~~ 1127 (1159)
|.=++....|++||+.|. ..+.. +..|-++..++.+..+......
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 999999999999999994 44444 7788888889888877765553
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=3.5e-19 Score=200.23 Aligned_cols=112 Identities=24% Similarity=0.291 Sum_probs=92.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.|+|+||||...-.|.-.+-.| |-+| |.|.++..+|-++++.|+.++.+.-+.+| ++|...++|..|+.+|-..
T Consensus 542 RgDKiIVFsDnvfALk~YAikl---~Kpf--IYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKL---GKPF--IYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHc---CCce--EECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEc
Confidence 6899999998776555444433 4444 77999999999999999999998877778 9999999999999999998
Q ss_pred CCC-CcChhhHHhhhhcccCCCC----cEEEEEEEeCCCHHHH
Q 001094 1083 LWW-NPTTEDQAIDRAHRIGQTR----PVSVLRLTVKNTVEDR 1120 (1159)
Q Consensus 1083 ~~W-NP~~e~QAigR~hRiGQtk----~V~V~rLv~~~TIEer 1120 (1159)
.+. +-..|.||.||+.|--... .++.|-|+.++|.|-.
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 876 5668899999999975322 3899999999998854
No 28
>PTZ00110 helicase; Provisional
Probab=99.83 E-value=2e-18 Score=211.47 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=98.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||++....++.|...|...+++...++|.++..+|+.+++.|++ +.+.||| +|.+++.|||+..+++||+||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~ILV-aTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPIMI-ATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcEEE-EcchhhcCCCcccCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999998 7777766 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+++++....|++||+.|.|.+-. ++.|+..+
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999998653 45556555
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.82 E-value=4.3e-18 Score=205.66 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=98.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|...++....++|.|+..+|+.+++.|.+ +.++||| +|.+++.|||+...++||++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~vLV-aTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSVLV-ATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcEEE-EecccccccchhcCCeEEEec
Confidence 45689999999999999999999999999999999999999999999997 7888887 459999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++.++....||+||+.|.|+.- ..+.|+..+
T Consensus 319 ~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 319 LARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999999764 445566554
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.81 E-value=7.7e-18 Score=202.07 Aligned_cols=104 Identities=23% Similarity=0.324 Sum_probs=95.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...++|||+.....++.|...|...++....++|.|+..+|..+++.|++ +.++|||+ |.+++.|+|+...++||++|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~vLVa-Td~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNVLVA-TDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcEEEE-ccccccCccCCCCCEEEEEC
Confidence 45799999999999999999999999999999999999999999999997 88888885 49999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V 1108 (1159)
+++++....|++||+.|.|..-.+.+
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999998654333
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=9.8e-18 Score=202.70 Aligned_cols=105 Identities=22% Similarity=0.270 Sum_probs=96.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
++.++|||+......+.+...|...|+....|+|+|+.++|..+++.|.. +.++||+ +|.+.|.|+|+...++||+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~vLV-aT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQVVV-ATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCCcccceEEEEeC
Confidence 45677999999999999999999999999999999999999999999997 7888887 558999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1109 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~ 1109 (1159)
++.++....|++||++|.|+.....++
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999987764443
No 32
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=1.8e-17 Score=198.12 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=98.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...++|||+.....++.|...|...|++...++|.|+.++|.+++++|++ ++++||+ +|.+++.|||+...++||+||
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~vLV-aTdv~~rGiDip~v~~VI~~d 331 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDILV-ATDVAARGLHIPAVTHVFNYD 331 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcEEE-EechhhcCCCccccCEEEEeC
Confidence 35799999999999999999999999999999999999999999999998 7888888 559999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+++++....|++||+.|.|+.-. ++-|+.++
T Consensus 332 ~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~~ 362 (423)
T PRK04837 332 LPDDCEDYVHRIGRTGRAGASGH--SISLACEE 362 (423)
T ss_pred CCCchhheEeccccccCCCCCee--EEEEeCHH
Confidence 99999999999999999997643 44455543
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.79 E-value=3.1e-17 Score=200.42 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=96.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHhh-CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~-~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
..++|||+.....++.|...|.. .|+....++|+++.++|..+++.|.+ +.++||+ +|.+++.|||+..+++||+||
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~ILV-aTdvl~rGiDip~v~~VI~~d 444 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPVIV-ATGVLGRGVDLLRVRQVIIFD 444 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCEEE-EecHhhccCCcccCCEEEEeC
Confidence 35899999999999999999975 69999999999999999999999998 7888887 569999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++.++....|++||++|.|..- .++.|+..+
T Consensus 445 ~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 445 MPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 9999999999999999999754 344466554
No 34
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.79 E-value=1.2e-16 Score=192.51 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=95.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh---CCCcEEecCC--------CCCHHHHHHHHHHHhcCCCceEEEeeccccccccC
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLN 1071 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~---~gi~~~rldG--------s~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLN 1071 (1159)
+..++|||+.++..++.|..+|.. .|++...+-| +|+..+..++++.|++ |++.||+ +|..|-+||+
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~-G~~NvLV-ATSV~EEGLD 489 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD-GEINVLV-ATSVAEEGLD 489 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-CCccEEE-EecchhccCC
Confidence 678999999999999999999973 3444333333 5889999999999999 8999988 5599999999
Q ss_pred ccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Q 001094 1072 MVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1135 (1159)
Q Consensus 1072 L~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~ 1135 (1159)
...++-||-||..-||....||+|| +| ++.=.++.|++ +.=+-.-...+..|+.+....
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~ 548 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQT 548 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999 66 44445555555 432222333344555554443
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.79 E-value=2.5e-17 Score=198.62 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=97.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...++|||+......+.|...|...++....++|.++..+|.++++.|.+ +.++||| +|.+++.|||+...++||+||
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLV-aTdv~~rGiDip~v~~VI~~~ 321 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRVLV-ATDIAARGLDIEELPHVVNYE 321 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EccHHhcCCCcccCCEEEEeC
Confidence 35689999999999999999999999999999999999999999999998 7888887 558999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++.++....|++||+.|.|.+-. .+-|+..+
T Consensus 322 ~P~~~~~yvqR~GRaGR~g~~G~--ai~l~~~~ 352 (456)
T PRK10590 322 LPNVPEDYVHRIGRTGRAAATGE--ALSLVCVD 352 (456)
T ss_pred CCCCHHHhhhhccccccCCCCee--EEEEecHH
Confidence 99999999999999999998654 33344443
No 36
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.78 E-value=3.3e-17 Score=198.65 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=98.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...|+|||++....++.|...|...|+....++|.++.++|.++++.|++ ++++||+ +|.+++.|||+...++||+++
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~vLv-aT~~l~~GIDi~~v~~VI~~~ 411 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRVLV-ATDVAGRGIHIDGISHVINFT 411 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCCcccCCCEEEEeC
Confidence 45699999999999999999999999999999999999999999999998 7888887 569999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+++++....|++||++|.|+.-. ++.|+.++
T Consensus 412 ~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 412 LPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999999999999999997643 34445443
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.78 E-value=5e-17 Score=199.98 Aligned_cols=108 Identities=17% Similarity=0.324 Sum_probs=97.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.|...|...++....++|.|+..+|..+++.|.+ +.++||| +|.+++.|||+...++||+||
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~VLV-aTdv~arGIDip~V~~VInyd 333 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEILV-ATDVAARGLHIDGVKYVYNYD 333 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EehhhhcCCCccCCCEEEEcC
Confidence 46799999999999999999999999999999999999999999999998 7888888 559999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
++|++....|++||+.|.|..-. .+.|+..
T Consensus 334 ~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 334 LPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred CCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 99999999999999999998653 3344544
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.77 E-value=6.3e-17 Score=200.99 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=94.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+......+.+...|...|+....|+|+|+.++|.++++.|.. +.++||+ +|.+.|.|+|+...++||++|
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~VLV-aT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCEEE-EechhhccCCCCCcCEEEEeC
Confidence 46789999999999999999999999999999999999999999999998 6788887 558999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCc
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
++.+.....|++||++|.|....
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999997654
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.76 E-value=1.3e-16 Score=197.51 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=94.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...++|||+.-....+.|...|...|+....++|.|+..+|++++++|.. +.+.||| +|.+++.|||+...++||+||
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~ILV-ATdv~arGIDip~V~~VI~~d 321 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDILI-ATDVAARGLDVERISLVVNYD 321 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCEEE-EcchHhcCCCcccCCEEEEeC
Confidence 34689999999999999999999999999999999999999999999998 7788777 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCc
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
++.++....|++||+.|.|..-.
T Consensus 322 ~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 322 IPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CCCCHHHHHHHhccccCCCCcce
Confidence 99999999999999999997654
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.76 E-value=7.9e-17 Score=200.33 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=94.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
+.+.|||+......+.+...|...|+++..|+|+|+.++|..+++.|.. +.+.||+ +|.+.|.|+|+...++||++++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~vlV-aT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKVMV-ATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCcCCCCCEEEEcCC
Confidence 5689999999999999999999999999999999999999999999988 6777777 5589999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCCcEE
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVS 1107 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~ 1107 (1159)
+++.....|++||++|.|+.....
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999766543
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.76 E-value=9.2e-17 Score=190.75 Aligned_cols=110 Identities=18% Similarity=0.316 Sum_probs=98.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...++|||+.....++.+...|...++....++|+++.++|..+++.|++ +.++||+ +|.+++.|+|+..+++||++|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~vLv-aT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRVLI-TTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-EcccccCCcCcccCCEEEEEC
Confidence 34689999999999999999999999999999999999999999999997 7888887 568999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
++.++....|++||++|.|..- .++.|+.++.
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~~ 375 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRKG--VAINFVTPDD 375 (401)
T ss_pred CCCCHHHEeecccccccCCCCc--eEEEEEcHHH
Confidence 9999999999999999998643 4555665543
No 42
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.75 E-value=1.2e-16 Score=206.86 Aligned_cols=105 Identities=14% Similarity=0.351 Sum_probs=84.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhC------CC---cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDS------SI---QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1074 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~------gi---~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~ 1074 (1159)
+.|+|||+.....++.+.+.|.+. ++ ....++|+++ ++++++++|.++ ....+++|.+..++|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~-~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE-RLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC-CCCeEEEEecccccCCCccc
Confidence 479999999999999888877652 22 3456899875 678899999884 44355668899999999999
Q ss_pred cCEEEEecCCCCcChhhHHhhhhcccCC---CCcEEEEEE
Q 001094 1075 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ---TRPVSVLRL 1111 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~e~QAigR~hRiGQ---tk~V~V~rL 1111 (1159)
.+.||++.|.-++....|++||+-|+-- +....|+-+
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 9999999999999999999999999854 444555554
No 43
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=1.8e-16 Score=197.67 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCC-CcChhhHHhhhhcccCCCCc
Q 001094 1027 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1027 ~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~W-NP~~e~QAigR~hRiGQtk~ 1105 (1159)
.++.+..++|.|+.++|.+++++|.+ ++.+||+ +|.+.++|+|+..++.||+++++. +-+...|++||++|-|..-.
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFRE-GEVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 46788999999999999999999998 7788887 568999999999999999999874 66788999999999987554
Q ss_pred E
Q 001094 1106 V 1106 (1159)
Q Consensus 1106 V 1106 (1159)
+
T Consensus 559 ~ 559 (630)
T TIGR00643 559 C 559 (630)
T ss_pred E
Confidence 3
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.72 E-value=1e-15 Score=195.04 Aligned_cols=108 Identities=13% Similarity=0.162 Sum_probs=92.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~--gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
.+.+++||+.....++.+...|++. ++++..++|.|+.++|++++.+|.+ ++.+||| +|...+.|+|+..+++||+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~ILV-aT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQVLV-CTTIIETGIDIPNANTIII 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcccccccCCEEEE
Confidence 3578999999999999999999874 7899999999999999999999998 7888888 5689999999999999999
Q ss_pred ecCC-CCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1081 LDLW-WNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1081 lD~~-WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
++++ +..+...|++||++|-|+.- ++|-|+..
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 9885 45567789999999988654 44555543
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.71 E-value=1.4e-15 Score=197.74 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=90.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEe
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1081 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~--gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~l 1081 (1159)
+.+++||+.....++.+...|.+. ++++..++|.|+.++|++++.+|.+ ++++||| +|...+.|||+..+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCEEE-ECchhhcccccccCCEEEEe
Confidence 568999999999999999999876 7889999999999999999999998 7888888 55899999999999999987
Q ss_pred cCC-CCcChhhHHhhhhcccCCCCcEEEEEEE
Q 001094 1082 DLW-WNPTTEDQAIDRAHRIGQTRPVSVLRLT 1112 (1159)
Q Consensus 1082 D~~-WNP~~e~QAigR~hRiGQtk~V~V~rLv 1112 (1159)
++. |......|++||++|.|++- ++|-++
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 664 67778999999999998765 444344
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.71 E-value=1.5e-15 Score=190.84 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=69.3
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCC-CcChhhHHhhhhcccCCCCcE
Q 001094 1028 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPV 1106 (1159)
Q Consensus 1028 gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~W-NP~~e~QAigR~hRiGQtk~V 1106 (1159)
++++..++|.|+.++|++++++|.+ ++.+||+ +|.+.++|+|+..++.||+++++. ..+...|++||++|-|..-
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g-- 580 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKA-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS-- 580 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--
Confidence 4788999999999999999999998 7788887 668999999999999999999874 5678889999999998654
Q ss_pred EEEEEE
Q 001094 1107 SVLRLT 1112 (1159)
Q Consensus 1107 ~V~rLv 1112 (1159)
+++.++
T Consensus 581 ~~ill~ 586 (681)
T PRK10917 581 YCVLLY 586 (681)
T ss_pred EEEEEE
Confidence 444444
No 47
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=3.7e-15 Score=175.13 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=95.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||++...+.+.|+..|+..+++.+.|+|..++.+|+.+++.|.+ ++..||+ .|+.++.||++...++||+||
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~vLV-ATdVAaRGLDi~dV~lVInyd 417 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSPVLV-ATDVAARGLDVPDVDLVINYD 417 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcceEE-EcccccccCCCccccEEEeCC
Confidence 67899999999999999999999999999999999999999999999998 7788888 559999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCc
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
+|=|.....+|+||..|-|++-.
T Consensus 418 fP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 418 FPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred CCCCHHHHHhhcCccccCCCCce
Confidence 99999999999999999887654
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.68 E-value=3.7e-15 Score=187.41 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=95.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
++..|||+..+...+.|...|...|+....|+|+|+.++|..++++|.. ++++||++ |.+.|.|||+...++||++++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~VLVA-TdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINIICA-TVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcEEEE-echhhcCCCccCCcEEEEcCC
Confidence 4578999999999999999999999999999999999999999999998 77888875 599999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCCcEEEE
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVSVL 1109 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~V~ 1109 (1159)
+-+.....|++||++|.|+.-.+..+
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999987664443
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.64 E-value=5.8e-14 Score=177.38 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=98.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC--------CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS--------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~--------gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~ 1074 (1159)
.+.++|||++.+...+.|...|+.. +.+...|+|+++.++|.++.++|.+ +.++||+ +|.+++.|||+..
T Consensus 270 ~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~vLV-aTd~lerGIDI~~ 347 (742)
T TIGR03817 270 EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLGVA-TTNALELGVDISG 347 (742)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceEEE-ECchHhccCCccc
Confidence 3579999999999999999988653 5667789999999999999999998 8888876 6799999999999
Q ss_pred cCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHH
Q 001094 1075 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl 1122 (1159)
.++||+++.|-+.....|++||+.|.|+.-- ++-++..+..|..++
T Consensus 348 vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 348 LDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred ccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 9999999999999999999999999997643 333444455565433
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.60 E-value=2e-13 Score=175.72 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=91.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC------CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccC
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~------gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~ 1076 (1159)
.+.++|||+......+.+...|... +..+..++|+++.++|..+.++|++ +.++||+ +|.+.+.|+|+...+
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~vLV-aTs~Le~GIDip~Vd 360 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKVVV-SSTSLELGIDIGYID 360 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChHHhcCCCCCCc
Confidence 3568999999999999999998762 4678889999999999999999998 7788877 558999999999999
Q ss_pred EEEEecCCCCcChhhHHhhhhccc-CCCCcEEEE
Q 001094 1077 HVLLLDLWWNPTTEDQAIDRAHRI-GQTRPVSVL 1109 (1159)
Q Consensus 1077 ~VI~lD~~WNP~~e~QAigR~hRi-GQtk~V~V~ 1109 (1159)
+||+++++.+.....|++||++|- |+...-.++
T Consensus 361 ~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 361 LVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred EEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 999999999999999999999986 454444444
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.58 E-value=7.6e-13 Score=168.62 Aligned_cols=82 Identities=20% Similarity=0.082 Sum_probs=66.3
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE----ec-----CCCCcChhhHHhhhhccc
Q 001094 1030 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD-----LWWNPTTEDQAIDRAHRI 1100 (1159)
Q Consensus 1030 ~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~----lD-----~~WNP~~e~QAigR~hRi 1100 (1159)
.+..++|+++..+|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. || .+.++....|++||++|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~-G~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRD-RLIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHc-CCCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 45678999999999999999998 8888888 5599999999988877765 66 456777899999999999
Q ss_pred CCCCcEEEEEEEe
Q 001094 1101 GQTRPVSVLRLTV 1113 (1159)
Q Consensus 1101 GQtk~V~V~rLv~ 1113 (1159)
|....=.++-++.
T Consensus 383 g~d~~G~~ii~~~ 395 (737)
T PRK02362 383 GLDPYGEAVLLAK 395 (737)
T ss_pred CCCCCceEEEEec
Confidence 9865434444443
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.4e-12 Score=158.91 Aligned_cols=107 Identities=24% Similarity=0.432 Sum_probs=97.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
..++|||+.-....+.|...|...|+....++|++++.+|.++++.|++ +..+|||+| ++++.||++...++||+||+
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~vLVaT-DvaaRGiDi~~v~~VinyD~ 350 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRVLVAT-DVAARGLDIPDVSHVINYDL 350 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEEEe-chhhccCCccccceeEEccC
Confidence 3479999999999999999999999999999999999999999999996 889999965 99999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
+.++....+|+||..|.|.+- .-+.|+..
T Consensus 351 p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~ 379 (513)
T COG0513 351 PLDPEDYVHRIGRTGRAGRKG--VAISFVTE 379 (513)
T ss_pred CCCHHHheeccCccccCCCCC--eEEEEeCc
Confidence 999999999999999999443 44445554
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.55 E-value=8.1e-13 Score=167.07 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=59.5
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC---------CCcChhhHHhhhhcccC
Q 001094 1031 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---------WNPTTEDQAIDRAHRIG 1101 (1159)
Q Consensus 1031 ~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~---------WNP~~e~QAigR~hRiG 1101 (1159)
+..++|+++.++|..+.+.|.+ +.++||+ +|.+.+.|+|+.+ .+||+.|.. +++....|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~-g~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRN-RYIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHc-CCCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 4557999999999999999997 7888877 5599999999985 688887643 35556779999999999
Q ss_pred CCCc
Q 001094 1102 QTRP 1105 (1159)
Q Consensus 1102 Qtk~ 1105 (1159)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7554
No 54
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.54 E-value=8.6e-13 Score=165.36 Aligned_cols=108 Identities=17% Similarity=0.061 Sum_probs=75.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhC-----CCcEEecCCCCCHH---------------------HHHHHHHHHhcCCCce
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDS-----SIQYRRLDGTMSVF---------------------ARDKAVKDFNTLPEVS 1057 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~-----gi~~~rldGs~s~~---------------------~R~~~v~~F~~d~~~~ 1057 (1159)
+.|.+||+..+..+..+...|.+. +...+.++|+.+.+ ....++++|.+++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 457777777777666666665442 23344555554322 2357999998866777
Q ss_pred EEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhccc-CCCC-cEEEEEEEe
Q 001094 1058 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI-GQTR-PVSVLRLTV 1113 (1159)
Q Consensus 1058 VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRi-GQtk-~V~V~rLv~ 1113 (1159)
++|+. ....+|.+....+++++.-|-=.. ...||+||+.|+ +-.| ...|+-++-
T Consensus 594 ilIVv-dmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLIVV-DMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEEE-cccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 77755 999999999999999998876654 468999999995 4333 466666653
No 55
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.54 E-value=3.1e-14 Score=140.86 Aligned_cols=105 Identities=31% Similarity=0.479 Sum_probs=96.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|...++++..++|+++..+|..+++.|++ +...+++ ++.++++|+|++.+++||+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ili-~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE-GEIVVLV-ATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EcChhhcCcChhhCCEEEEeC
Confidence 47899999999999999999999999999999999999999999999998 4454555 779999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1109 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~ 1109 (1159)
++|++....|++||++|.||+..|.++
T Consensus 105 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 105 LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999998877663
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.53 E-value=8.9e-13 Score=154.34 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=88.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCC--cEEecCCCCCHHHHHHH----HHHHhcCCCceEEEeeccccccccCccccC
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKA----VKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi--~~~rldGs~s~~~R~~~----v~~F~~d~~~~VLLlStkagg~GLNL~~A~ 1076 (1159)
.+.++|||+......+.+...|++.+. .+..++|.++..+|.+. ++.|.+ +..+||| +|.+.+.|+|+ .++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~ilv-aT~~~~~GiDi-~~~ 297 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFVIV-ATQVIEASLDI-SAD 297 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeEEE-ECcchhceecc-CCC
Confidence 467999999999999999999988766 48899999999999764 888987 6677766 66899999999 588
Q ss_pred EEEEecCCCCcChhhHHhhhhcccCCCC----cEEEEEEEeCC
Q 001094 1077 HVLLLDLWWNPTTEDQAIDRAHRIGQTR----PVSVLRLTVKN 1115 (1159)
Q Consensus 1077 ~VI~lD~~WNP~~e~QAigR~hRiGQtk----~V~V~rLv~~~ 1115 (1159)
.||.++.+ +....|++||++|.|... .|.|+.....+
T Consensus 298 ~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 298 VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88887654 778899999999999764 35555544443
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.52 E-value=2e-12 Score=164.40 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE-------ecCCCCc-ChhhHHhhhhcccC
Q 001094 1030 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-------LDLWWNP-TTEDQAIDRAHRIG 1101 (1159)
Q Consensus 1030 ~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~-------lD~~WNP-~~e~QAigR~hRiG 1101 (1159)
.+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. ++..+-| ....|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~-G~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFRE-GLIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHC-CCCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 45678999999999999999998 7888888 5599999999987776663 2222223 35589999999998
Q ss_pred CCCcEEEEEEEeCC
Q 001094 1102 QTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1102 Qtk~V~V~rLv~~~ 1115 (1159)
....=.++-++..+
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 76654555555443
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.50 E-value=7.2e-13 Score=163.39 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=83.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc---------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------- 1073 (1159)
.+..+|||+......+.|...|.+.|+++..++|.+...+|..+..+|+. ..|+ ++|..+|.|+++.
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g~Vl-IATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---GAVT-VATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---CeEE-EEccccccccCCCCCccccccC
Confidence 57899999999999999999999999999999999987777666555544 2555 4779999999998
Q ss_pred ccCEEEEecCCCCcChhhHHhhhhcccCCCCc
Q 001094 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1074 ~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
..++|+.++++-+. .+.|++||+.|.|..-.
T Consensus 499 GL~vIit~~~ps~r-id~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 499 GLAVIGTERMENSR-VDLQLRGRSGRQGDPGS 529 (762)
T ss_pred CeEEEEecCCCCcH-HHHHhhhcccCCCCcee
Confidence 77888999998654 55999999999997654
No 59
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.49 E-value=1.5e-12 Score=144.45 Aligned_cols=123 Identities=26% Similarity=0.278 Sum_probs=107.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.-+|||+..-.+.+.+.-.|+..|+....++|.|+...|..+++.|+. +...||+ +|+.|+.||+.+.+++||+||
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~iLv-~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSILV-CTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcEEE-ecchhcccCCCCCceEEEecC
Confidence 56889999999999999999999999999999999999999999999998 6677777 569999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHH--HHHHHHHHHH
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED--RILALQQKKR 1129 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEe--rIl~lq~~K~ 1129 (1159)
.|-+-...+.|.||+.|.| +.-.+..||+.-.||- ||.....+|.
T Consensus 377 iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred CCCcHHHHHHHcccccccC--CCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999 6667778888765553 4444444443
No 60
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=1.1e-11 Score=154.51 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=92.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCc---cccC---
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNM---VAAC--- 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL---~~A~--- 1076 (1159)
.+.++|||+......+.|...|.+.|+++..++|.+...++..+..+++. ..|+| +|..+|.|+++ ....
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g~VlI-ATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---GAVTV-ATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---CeEEE-EccchhcCcCCCccccccccc
Confidence 57899999999999999999999999999999999987777666666554 25665 77999999999 4666
Q ss_pred --EEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001094 1077 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124 (1159)
Q Consensus 1077 --~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~l 1124 (1159)
+||.+|++-|+..+.|++||+.|.|..-... .|+ |.|+.++.+
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~~ 547 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLKR 547 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHHh
Confidence 9999999999999999999999999865332 222 445555543
No 61
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=5.6e-12 Score=134.32 Aligned_cols=110 Identities=20% Similarity=0.347 Sum_probs=100.2
Q ss_pred ceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC
Q 001094 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084 (1159)
Q Consensus 1005 ~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~ 1084 (1159)
...|||+.-....|+|.+.|+...+.+..++|.|+.++|++++++|+. +..+||| +++.-+.|++.+..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~SrvLi-tTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRVLI-TTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceEEE-EechhhccCCcceeEEEEecCCC
Confidence 578999999999999999999999999999999999999999999998 7778887 77999999999999999999999
Q ss_pred CCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHH
Q 001094 1085 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1085 WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIE 1118 (1159)
-|+.....||||.+|.|.+- .+..|+..+.++
T Consensus 345 ~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~ 376 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKG--VAINFVKSDDLR 376 (400)
T ss_pred ccHHHHhhhhccccccCCcc--eEEEEecHHHHH
Confidence 99999999999999999765 455677666443
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.9e-11 Score=147.77 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=90.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc---ccC---
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~---~A~--- 1076 (1159)
.+..+|||+......+.|...|.+.|+++..++|.+ .+|++.+..|.. ....|+| +|..+|.|+++. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~--~~rE~~ii~~ag-~~g~VlV-ATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQ--DAEEAAIVARAG-QRGRITV-ATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCc--HHHHHHHHHHcC-CCCcEEE-EccchhcccCcCCccchhhcC
Confidence 456799999999999999999999999999999986 467777777765 3345555 779999999987 333
Q ss_pred --EEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001094 1077 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125 (1159)
Q Consensus 1077 --~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq 1125 (1159)
+||.+|.+=|...+.|++||+.|.|..-.+ ..|+ |.|+.++..-
T Consensus 548 GLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~~ 593 (656)
T PRK12898 548 GLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQSF 593 (656)
T ss_pred CCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHhh
Confidence 999999999999999999999999975432 2222 4466555443
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.42 E-value=1.6e-12 Score=159.49 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=90.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc-------c
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------A 1075 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~-------A 1075 (1159)
.+..+|||+......+.|...|.+.|+++..++|. ..+|++.+.+|.. ....|+| +|..+|.|+++.. .
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag-~~g~VtI-ATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG-RKGAVTI-ATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC-CCceEEE-EeccccCCcCCCccchhhcCC
Confidence 68999999999999999999999999999999998 7899999999987 5566776 5699999999887 6
Q ss_pred CEEEEecCCCCcChhhHHhhhhcccCCCCc
Q 001094 1076 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1076 ~~VI~lD~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
-|||.++++-|+..+.|++||+.|.|..-.
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 799999999999999999999999998754
No 64
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.42 E-value=5.1e-13 Score=140.11 Aligned_cols=167 Identities=23% Similarity=0.294 Sum_probs=104.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
.+|++||.+++.-+..........+.++|...+|.|||+.+++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 5699999999998887654331125689999999999999998876521
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcEEEEEeC--CC------
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHG--SS------ 541 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~Vlvy~G--~~------ 541 (1159)
. ++|||||. +|+.||..++..+... ...+..... ..
T Consensus 51 ----------------------------~-----~~l~~~p~~~l~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 95 (184)
T PF04851_consen 51 ----------------------------R-----KVLIVAPNISLLEQWYDEFDDFGSE--KYNFFEKSIKPAYDSKEFI 95 (184)
T ss_dssp ----------------------------C-----EEEEEESSHHHHHHHHHHHHHHSTT--SEEEEE--GGGCCE-SEEE
T ss_pred ----------------------------c-----ceeEecCHHHHHHHHHHHHHHhhhh--hhhhccccccccccccccc
Confidence 0 58999999 5899999999766542 122211100 00
Q ss_pred -CCC-----ChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCC
Q 001094 542 -RTK-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 615 (1159)
Q Consensus 542 -r~~-----~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~ 615 (1159)
... ........++++++++.+........... ... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~----------~~~------------~---------------- 137 (184)
T PF04851_consen 96 SIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKID----------ESA------------R---------------- 137 (184)
T ss_dssp TTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-----------------------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHhhcccccccc----------cch------------h----------------
Confidence 000 11234578899999999975421100000 000 0
Q ss_pred CCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCC
Q 001094 616 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 671 (1159)
Q Consensus 616 ~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPi 671 (1159)
....+..-.+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 --------~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 --------RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp --------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred --------hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00013345678999999999864332 66666688999999999995
No 65
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.41 E-value=2.4e-11 Score=152.65 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=72.2
Q ss_pred HHHHHHHhhC--CCcEEecCCCCC--HHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC---CCc---
Q 001094 1018 DLLEASLKDS--SIQYRRLDGTMS--VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNP--- 1087 (1159)
Q Consensus 1018 dlLe~~L~~~--gi~~~rldGs~s--~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~---WNP--- 1087 (1159)
+.+++.|.+. ++++.++||.+. .+++++++++|.+ +++.||| .|...+.|+|+...+.|+++|.+ ..|
T Consensus 440 e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 440 ERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR-GEADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred HHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc-CCCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 4455555553 678899999986 4689999999998 7888887 56889999999999999888765 333
Q ss_pred ------ChhhHHhhhhcccCCCCcEEEEEEE
Q 001094 1088 ------TTEDQAIDRAHRIGQTRPVSVLRLT 1112 (1159)
Q Consensus 1088 ------~~e~QAigR~hRiGQtk~V~V~rLv 1112 (1159)
....|+.||+.|.|....|.+...-
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 4678999999998877766665443
No 66
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.41 E-value=2.9e-13 Score=122.33 Aligned_cols=78 Identities=33% Similarity=0.507 Sum_probs=72.3
Q ss_pred HHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccC
Q 001094 1022 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1101 (1159)
Q Consensus 1022 ~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiG 1101 (1159)
.+|+..++.+..++|.++.++|+.+++.|+. +...||++ +.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~-~~~~vli~-t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNS-GEIRVLIA-TDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHT-TSSSEEEE-SCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhc-cCceEEEe-eccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3688899999999999999999999999999 55666664 599999999999999999999999999999999999998
No 67
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.41 E-value=4.4e-11 Score=143.17 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC-CCcChhhHHhhhhcccCC
Q 001094 1028 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTEDQAIDRAHRIGQ 1102 (1159)
Q Consensus 1028 gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~-WNP~~e~QAigR~hRiGQ 1102 (1159)
++....++|.|+.+++++++.+|++ +++.||+ ||.+.-+|+|...|+.+|+.++. +--+...|--|||+|=+.
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~-~e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKE-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHc-CCCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 4567789999999999999999998 7888887 66899999999999999999876 566788899999999543
No 68
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.40 E-value=1.7e-12 Score=136.78 Aligned_cols=162 Identities=28% Similarity=0.296 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
.++++||..++.++.... +..++...+|.|||..++.++....
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~------------------------------- 49 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEAL------------------------------- 49 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHh-------------------------------
Confidence 468999999999988421 5689999999999998777765421
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeC-hhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhc
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCP-TSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 549 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P-~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l 549 (1159)
...+.+.+|||+| ..+..||..++.+............+++.........+
T Consensus 50 ----------------------------~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 50 ----------------------------KRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred ----------------------------cccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH
Confidence 0011346999999 45889999999988763322556666665432222222
Q ss_pred --CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCC
Q 001094 550 --AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627 (1159)
Q Consensus 550 --~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~ 627 (1159)
..++++++|++.+...+.. ..
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~---------------------------------------------------------~~ 124 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLEN---------------------------------------------------------DL 124 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHc---------------------------------------------------------CC
Confidence 2349999999999754311 00
Q ss_pred CcccceeEEEEccCcccCC-ch-hHHHHHHHhc-ccCcEEEEeccCCCCC
Q 001094 628 LAKVGWFRVVLDEAQSIKN-HR-TQVARACWGL-RAKRRWCLSGTPIQNA 674 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IKN-~~-S~~~ral~~L-~a~~RwlLTGTPiqN~ 674 (1159)
+....|.++|+||+|.+.+ .. ......+..+ ...+++++||||..+.
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhH
Confidence 2334678999999999985 33 3333344444 5788999999997443
No 69
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.39 E-value=6.6e-11 Score=147.67 Aligned_cols=104 Identities=23% Similarity=0.327 Sum_probs=85.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHH-----HHHHHHhc----CC-----CceEEEeecccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-----KAVKDFNT----LP-----EVSVMIMSLKAASL 1068 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~-----~~v~~F~~----d~-----~~~VLLlStkagg~ 1068 (1159)
.+.++|||++....++.|...|+..++ ..++|.|+..+|. +++++|.. .. ....+|++|++++.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 467899999999999999999999887 8999999999999 78999976 11 11345678899999
Q ss_pred ccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCc--EEEEEE
Q 001094 1069 GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP--VSVLRL 1111 (1159)
Q Consensus 1069 GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~--V~V~rL 1111 (1159)
||++.. ++||+...++ ....||+||++|.|.... ++|+.+
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 999975 8999876654 688999999999998644 454433
No 70
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.39 E-value=3.9e-11 Score=137.39 Aligned_cols=110 Identities=22% Similarity=0.274 Sum_probs=97.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
...+|||.+.....|.|+..|.+.|++.++|+|+-++++|+.++..|.+ +...||++ |+++|.||+....++||.||.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~-~t~dIlVa-TDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE-GTGDILVA-TDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh-cCCCEEEE-ecccccCCCCCccceeeecch
Confidence 5689999999999999999999999999999999999999999999998 56677775 599999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
.=+-.....||||.+|-|+.- +-+..|...+|
T Consensus 595 aksieDYtHRIGRTgRAGk~G-taiSflt~~dt 626 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSG-TAISFLTPADT 626 (673)
T ss_pred hhhHHHHHHHhccccccccCc-eeEEEeccchh
Confidence 998889999999999999865 33333444443
No 71
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=3.9e-11 Score=136.83 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=95.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHh----hCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1078 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~----~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~V 1078 (1159)
...++|+|+...+....|...|+ ...+.+-.|.|..+.+.|.+.+++|+. +++.|||+| ++.+.|+++...+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcS-D~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICS-DALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEeh-hhhhcCCcccccceE
Confidence 56799999999988777777776 346677789999999999999999999 899999988 999999999999999
Q ss_pred EEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1079 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1079 I~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
|.|||+-.-.....|+||..|-||.- ++|.|+...
T Consensus 506 INYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 506 INYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred eecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 99999999999999999999999865 455555544
No 72
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.37 E-value=5.9e-11 Score=137.87 Aligned_cols=106 Identities=23% Similarity=0.323 Sum_probs=98.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
..++++||.+-.++++.|+.+|...++++..++|.-+..+|+++++.|.. +...||+++ ..++.|||.....|||+||
T Consensus 336 ~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pvlVaT-~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 336 KWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPVLVAT-NVAARGLDIPNVKHVINYD 413 (482)
T ss_pred ccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcceEEEe-hhhhcCCCCCCCceeEEee
Confidence 45799999999999999999999999999999999999999999999998 788888855 9999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLR 1110 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~r 1110 (1159)
.+=+-.....||||..|-|+.-..+.+.
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEEe
Confidence 9999999999999999999987655543
No 73
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.36 E-value=5.4e-11 Score=143.89 Aligned_cols=107 Identities=13% Similarity=0.242 Sum_probs=84.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhC----CCcE-EecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDS----SIQY-RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1078 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~----gi~~-~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~V 1078 (1159)
-.|.|||+.-...++.|...|... +-.| ..++|.. ++-++.|+.|-.......+.+|.+..-.|++...+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 469999999999999999999764 2233 4667774 55667888998754444455588999999999999999
Q ss_pred EEecCCCCcChhhHHhhhhccc-------CCCCc-EEEEEEE
Q 001094 1079 LLLDLWWNPTTEDQAIDRAHRI-------GQTRP-VSVLRLT 1112 (1159)
Q Consensus 1079 I~lD~~WNP~~e~QAigR~hRi-------GQtk~-V~V~rLv 1112 (1159)
+++-+--+-....|-+||.-|+ ||.|. .+|+-++
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999999997 45554 5555554
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.35 E-value=1.7e-10 Score=134.89 Aligned_cols=85 Identities=13% Similarity=0.225 Sum_probs=68.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCC--CcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSS--IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~g--i~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
++.|+|||+.....++.+...|+..+ +.+..++|.++..+|.++. ...|| ++|.+++.||++.. ..||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~iL-VaTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFDIL-LGTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCCEE-EEecHHhcccCCCC-ceEE-
Confidence 57799999999999999999999865 5778999999999987653 34455 57799999999975 4666
Q ss_pred ecCCCCcChhhHHhhhhc
Q 001094 1081 LDLWWNPTTEDQAIDRAH 1098 (1159)
Q Consensus 1081 lD~~WNP~~e~QAigR~h 1098 (1159)
++ +-++....||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 56 456778888888863
No 75
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.31 E-value=1.4e-11 Score=121.95 Aligned_cols=137 Identities=26% Similarity=0.233 Sum_probs=96.1
Q ss_pred cceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccccccccccccccccCCCCCCccchhh
Q 001094 416 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 495 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~ 495 (1159)
+.++...+|.|||.++++++.....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~------------------------------------------------------- 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD------------------------------------------------------- 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh-------------------------------------------------------
Confidence 5799999999999999999865320
Q ss_pred hhhcCCCCCcEEEEeChhhH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh--hhcCCCCEEEechhhHhhccCCCCCC
Q 001094 496 EQAKGRPAAGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIVSMEVPKQPLG 572 (1159)
Q Consensus 496 ~~~~~~p~~~tLIV~P~sLl-~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~~l~~~DVVItTY~~l~~e~~~~~~~ 572 (1159)
....+.+||+||...+ .||.+++.++... .+.+.++++....... ......+++++||+.+...+..
T Consensus 27 ----~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~---- 96 (144)
T cd00046 27 ----SLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER---- 96 (144)
T ss_pred ----cccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc----
Confidence 0123469999999955 5566677766532 4777777776544332 2346889999999988653211
Q ss_pred CchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCCchhHHH
Q 001094 573 DKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 652 (1159)
Q Consensus 573 ~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ 652 (1159)
..+....|++||+||+|.+.+......
T Consensus 97 -----------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 97 -----------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred -----------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHH
Confidence 002234688999999999988765543
Q ss_pred ---HHHHhcccCcEEEEeccC
Q 001094 653 ---RACWGLRAKRRWCLSGTP 670 (1159)
Q Consensus 653 ---ral~~L~a~~RwlLTGTP 670 (1159)
.........++++|||||
T Consensus 124 ~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 124 GLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhhCCccceEEEEeccC
Confidence 333445778899999999
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.31 E-value=2.5e-10 Score=149.67 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=76.4
Q ss_pred CceEEEEcCcHHH---HHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee---ccccccccCccc-cC
Q 001094 1004 GEKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-AC 1076 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~---LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS---tkagg~GLNL~~-A~ 1076 (1159)
+.++|||++.... ++.|...|+..|+++..++|++ .+.+++|.+ ++++|||.+ +..++.||++.. ..
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDiP~~Ir 401 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDLPERIR 401 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCCCccee
Confidence 3479999998666 9999999999999999999999 334699998 889999987 789999999997 89
Q ss_pred EEEEecCCC------CcChhhHHhhhhccc
Q 001094 1077 HVLLLDLWW------NPTTEDQAIDRAHRI 1100 (1159)
Q Consensus 1077 ~VI~lD~~W------NP~~e~QAigR~hRi 1100 (1159)
+||+|+.|= .......+++|.-++
T Consensus 402 yVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 402 YAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999986 444555777777543
No 77
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.29 E-value=1.8e-09 Score=134.03 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEe
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1081 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~--gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~l 1081 (1159)
+.++|||..-...++.+...|.+. ++.+..++|+++. +++++++|..++..+||| +|..++.||++...++||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kILV-ATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSIII-STPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEEe-ccChhhccccccCeeEEEEC
Confidence 468999999999999999999886 7999999999986 467788885446666666 77999999999999999999
Q ss_pred cCCC------------CcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHH
Q 001094 1082 DLWW------------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119 (1159)
Q Consensus 1082 D~~W------------NP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEe 1119 (1159)
+... +.+...||.||++|. ++=.+|+|+.+.....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7222 444566777777776 5678899998887643
No 78
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.28 E-value=6.9e-12 Score=113.34 Aligned_cols=81 Identities=31% Similarity=0.488 Sum_probs=74.0
Q ss_pred HHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhc
Q 001094 1019 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1098 (1159)
Q Consensus 1019 lLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~h 1098 (1159)
.|...|...++.+..++|.++.++|.++++.|++ +.. .+|+++.++++|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN-GKI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc-CCC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4677888889999999999999999999999998 444 55567899999999999999999999999999999999999
Q ss_pred ccC
Q 001094 1099 RIG 1101 (1159)
Q Consensus 1099 RiG 1101 (1159)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 79
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=3.3e-10 Score=137.67 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=70.0
Q ss_pred HHHHHhhC--CCcEEecCCCCCHHHH--HHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC--CC-c-----
Q 001094 1020 LEASLKDS--SIQYRRLDGTMSVFAR--DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW--WN-P----- 1087 (1159)
Q Consensus 1020 Le~~L~~~--gi~~~rldGs~s~~~R--~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~--WN-P----- 1087 (1159)
+++.|.+. +.++.++|+.++...+ +++++.|.+ +++.||| +|...+.|+++...+.|+++|.+ .| |
T Consensus 274 ~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~ 351 (505)
T TIGR00595 274 VEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAA 351 (505)
T ss_pred HHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccchH
Confidence 34444433 6788999999876655 899999998 7788887 56889999999999999877654 23 4
Q ss_pred ----ChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1088 ----TTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1088 ----~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
....|+.||+.|-+....|.+..+-.+
T Consensus 352 E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 352 ERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 357899999999887766765544443
No 80
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.24 E-value=6.2e-10 Score=146.52 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=82.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCC---------------------------------CcEEecCCCCCHHHHHHHHHHH
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSS---------------------------------IQYRRLDGTMSVFARDKAVKDF 1050 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~g---------------------------------i~~~rldGs~s~~~R~~~v~~F 1050 (1159)
+.++|||++.+...+.+...|.+.. +....++|+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 5678899888888888888776431 1135688999999999999999
Q ss_pred hcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhccc
Q 001094 1051 NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100 (1159)
Q Consensus 1051 ~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRi 1100 (1159)
++ +..+|++ +|.+...|||+...+.||+++.+.+.....|++||+.|.
T Consensus 324 K~-G~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KS-GELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred Hh-CCceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 98 7888877 559999999999999999999999999999999999985
No 81
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.19 E-value=1.7e-09 Score=124.64 Aligned_cols=121 Identities=25% Similarity=0.236 Sum_probs=100.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh--CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD--SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~--~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
...|.|||-..-....+++..+.+ .|++..-++|.|++..|-.+..+|... -.++|.+|+.++.||++.+.+.||-
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~TDv~aRGLDFpaVdwViQ 389 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK--RAVVLFCTDVAARGLDFPAVDWVIQ 389 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh--cceEEEeehhhhccCCCcccceEEE
Confidence 467999999999999999998876 599999999999999999999999873 3466668899999999999999999
Q ss_pred ecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 001094 1081 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1128 (1159)
Q Consensus 1081 lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K 1128 (1159)
+|.+-+-...+.|+||.-|.+-.-.-.++ ++. +=||.++...++|
T Consensus 390 ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~p-sEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 390 VDCPEDVDTYIHRVGRTARYKERGESLLM--LTP-SEEEAMLKKLQKK 434 (758)
T ss_pred ecCchhHHHHHHHhhhhhcccCCCceEEE--Ecc-hhHHHHHHHHHHc
Confidence 99999999999999999999876654432 333 3345655555554
No 82
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.18 E-value=4e-10 Score=131.41 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=98.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
+=...|||+....-++-|..+|...|++.-.+.|.|++.+|..+++.++. -.++||+ |++..+.|++-..+|-||.+|
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rILV-sTDLtaRGIDa~~vNLVVNiD 348 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRILV-STDLTARGIDADNVNLVVNID 348 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEEEE-ecchhhccCCccccceEEecC
Confidence 45678999999999999999999999999999999999999999999987 5677777 779999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
++-+..+...||||++|+|- +...|..+..+.-
T Consensus 349 ~p~d~eTY~HRIGRAgRFG~-~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 349 APADEETYFHRIGRAGRFGA-HGAAVTLLEDERE 381 (980)
T ss_pred CCcchHHHHHHhhhcccccc-cceeEEEeccchh
Confidence 99999999999999999996 5566665555443
No 83
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=1.5e-09 Score=135.36 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=95.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc---------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------- 1073 (1159)
.+.-||||+......+.|...|.+.||++..++|.+...+|+.+.++|+. + .|+| +|..+|.|+++.
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~-G--~VtI-ATNmAGRGtDI~Lggn~~~~~ 518 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP-G--AVTI-ATNMAGRGTDIVLGGSLAADL 518 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC-C--cEEE-eccCccCCcceecCCchhhhh
Confidence 78999999999999999999999999999999999999999999999998 3 3555 679999999865
Q ss_pred -----------------------------ccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001094 1074 -----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124 (1159)
Q Consensus 1074 -----------------------------~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~l 1124 (1159)
+.=|||.-+.+=|-.++.|..||++|.|..-....|- |+|+.++.+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~~ 593 (896)
T PRK13104 519 ANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMRI 593 (896)
T ss_pred hccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHH
Confidence 2348999999999999999999999999866543332 556655543
No 84
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.18 E-value=2e-09 Score=120.00 Aligned_cols=110 Identities=27% Similarity=0.353 Sum_probs=99.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
+..|+|||+...-++|-|.--|.-.||....++|.-.+.+|+.+++.|+. +.+++|+ .|+.++.||++....||+.||
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrILv-aTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRILV-ATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEEEE-EechhhcCCCchhcceeeccC
Confidence 68899999999999999999999999999999999999999999999998 8899888 559999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
.+-|-.....|+||.+|-|.+- +-|..|.-++
T Consensus 542 FP~nIeeYVHRvGrtGRaGr~G-~sis~lt~~D 573 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRTGRAGRTG-TSISFLTRND 573 (629)
T ss_pred CCccHHHHHHHhcccccCCCCc-ceEEEEehhh
Confidence 9999999999999999999765 4455455444
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.18 E-value=1.6e-09 Score=142.40 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=69.2
Q ss_pred CceEEEEcCcH---HHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee---ccccccccCccc-cC
Q 001094 1004 GEKAIVFSQWT---KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-AC 1076 (1159)
Q Consensus 1004 ~~KvIIFSq~t---~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS---tkagg~GLNL~~-A~ 1076 (1159)
+.++|||++-. ..++.|...|...|++...++|.++ ++++++|.+ ++++||+.+ +..++.||++.. ..
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv~aRGIDip~~V~ 400 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAE-GEIDVLIGVASYYGTLVRGLDLPERVR 400 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHc-CCCCEEEEeccccCcccccCCCCcccc
Confidence 35789999988 9999999999999999999999986 478999998 889999987 689999999998 79
Q ss_pred EEEEecCC
Q 001094 1077 HVLLLDLW 1084 (1159)
Q Consensus 1077 ~VI~lD~~ 1084 (1159)
+||++|+|
T Consensus 401 ~vI~~~~P 408 (1171)
T TIGR01054 401 YAVFLGVP 408 (1171)
T ss_pred EEEEECCC
Confidence 99999987
No 86
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.16 E-value=2.9e-09 Score=135.82 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=93.5
Q ss_pred CCceEEEEcCcHHHHHHHH----HHHhhCC----CcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLE----ASLKDSS----IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe----~~L~~~g----i~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~ 1074 (1159)
.+-|.|+|+.+...+..+. ..+...+ .....+.|++...+|.++...|+. +++.+++ ++.+.-+|+++-.
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~~~-st~AlelgidiG~ 382 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLGVI-ATNALELGIDIGS 382 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccEEe-cchhhhhceeehh
Confidence 5789999999999999997 4444445 567889999999999999999998 7777777 7799999999999
Q ss_pred cCEEEEecCCC-CcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHH
Q 001094 1075 ACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123 (1159)
Q Consensus 1075 A~~VI~lD~~W-NP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~ 1123 (1159)
.+.||+.-.+- .-....|+.||++|-||.-.+.+ ..-.+-++..+..
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~--v~~~~~~d~yy~~ 430 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV--VLRSDPLDSYYLR 430 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEE--EeCCCccchhhhh
Confidence 99999988776 55778899999999995543322 2225666665554
No 87
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=1.3e-09 Score=135.34 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=84.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc---ccC---
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~---~A~--- 1076 (1159)
.+..+|||+......+.|...|.+.|+++..++|.+...+++-+..+++. ..|+| +|..+|.|+++. ...
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g~VtI-ATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---GAVTI-ATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---ceEEE-EeccccCCCCCCCCcchhhhC
Confidence 68899999999999999999999999999999999875444444444443 23555 669999999984 566
Q ss_pred --EEEEecCCCCcChhhHHhhhhcccCCCCcE
Q 001094 1077 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPV 1106 (1159)
Q Consensus 1077 --~VI~lD~~WNP~~e~QAigR~hRiGQtk~V 1106 (1159)
|||.++.+-|...+.|++||+.|.|..-..
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 999999999999999999999999987654
No 88
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.15 E-value=5e-09 Score=133.18 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=90.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHhh---CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~---~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
+.++|||..-...++.+...|.+ .++.++.++|+++.++|.++++.|.. +..+|+| +|..+..||++...++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkVlV-ATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKVVL-ATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEEEE-ecchHhhcccccCceEEEE
Confidence 35799999999999999999986 47889999999999999999999986 5666666 7799999999999999999
Q ss_pred ecCC----CCcCh--------------hhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1081 LDLW----WNPTT--------------EDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1081 lD~~----WNP~~--------------e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
++.. +||.. ..||.||++|. ++=..|||+++..
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 8865 56654 56888888886 4667889987653
No 89
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.15 E-value=7.7e-09 Score=128.82 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=101.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCC-CcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSS-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~g-i~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...+|||++-+.+.+.+...|+..+ ..+..-+||++.++|..+-++|.+ ++.+++++| .+...||+.-..+.||.+.
T Consensus 253 ~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lravV~T-SSLELGIDiG~vdlVIq~~ 330 (814)
T COG1201 253 HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKAVVAT-SSLELGIDIGDIDLVIQLG 330 (814)
T ss_pred cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceEEEEc-cchhhccccCCceEEEEeC
Confidence 3489999999999999999999876 888889999999999999999999 779998855 8999999999999999999
Q ss_pred CCCCcChhhHHhhhh-cccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 001094 1083 LWWNPTTEDQAIDRA-HRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1130 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~-hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~ 1130 (1159)
.|=.-+...||+||+ ||+|.. --.++++.+ .++.+.-+...+..
T Consensus 331 SP~sV~r~lQRiGRsgHr~~~~---Skg~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 331 SPKSVNRFLQRIGRAGHRLGEV---SKGIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred CcHHHHHHhHhccccccccCCc---ccEEEEecC-HHHHHHHHHHHHHH
Confidence 999999999999999 566653 334455555 66666555544443
No 90
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.11 E-value=3.3e-09 Score=127.66 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=97.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.-.|||+..+...+.|...|...|+....|+|+|+.++|+..-++|.+ +++.||++ |.|.|-|+|=.....|||||
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~iiVA-T~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKVMVA-TNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEE-eccccCccCCCCceEEEEec
Confidence 34567999999999999999999999999999999999999999999998 67788885 59999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++=+....-|=+|||+|-|....... |+...
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~ail--l~~~~ 337 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAEAIL--LYSPE 337 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcceEEE--eeccc
Confidence 99999999999999999998765443 44433
No 91
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.09 E-value=9.2e-09 Score=118.06 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=90.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
..|+|||+.--.+.+++...|....+++..|+|..++..|.....+|.+. +.-||| .+++++.|++....+-||-|||
T Consensus 330 ~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-esgIL~-cTDVaARGlD~P~V~~VvQ~~~ 407 (543)
T KOG0342|consen 330 RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ESGILV-CTDVAARGLDIPDVDWVVQYDP 407 (543)
T ss_pred CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-ccceEE-ecchhhccCCCCCceEEEEeCC
Confidence 37999999999999999999999999999999999999999999999984 333455 6699999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk 1104 (1159)
+-+|...+.|+||..|-|-+-
T Consensus 408 P~d~~~YIHRvGRTaR~gk~G 428 (543)
T KOG0342|consen 408 PSDPEQYIHRVGRTAREGKEG 428 (543)
T ss_pred CCCHHHHHHHhccccccCCCc
Confidence 999999999999999977554
No 92
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.06 E-value=2.2e-08 Score=127.57 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=89.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHhh---CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~---~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
+..+|||..-...++.+...|.. .++.+..++|+++.++|.+++..|.. +..+|+| +|..+..||++...++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkVlv-ATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKVVL-ATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEEEE-ecchHHhcccccCceEEEE
Confidence 46899999999999999999986 57889999999999999999999976 5666665 7799999999999999999
Q ss_pred ecCC----CCcC--------------hhhHHhhhhcccCCCCcEEEEEEEeCCCH
Q 001094 1081 LDLW----WNPT--------------TEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117 (1159)
Q Consensus 1081 lD~~----WNP~--------------~e~QAigR~hRiGQtk~V~V~rLv~~~TI 1117 (1159)
++.. |+|. ...||.||++|. .+=+.|||+++...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 7654 4443 356777777775 47789999886543
No 93
>PRK14701 reverse gyrase; Provisional
Probab=99.06 E-value=1.7e-08 Score=135.54 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=78.3
Q ss_pred CceEEEEcCcHH---HHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeec---cccccccCccc-cC
Q 001094 1004 GEKAIVFSQWTK---MLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL---KAASLGLNMVA-AC 1076 (1159)
Q Consensus 1004 ~~KvIIFSq~t~---~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlSt---kagg~GLNL~~-A~ 1076 (1159)
+...|||++... .++.|...|...|+++..++|. |.+++++|.+ +++.||+.+. ..++.||++.. ..
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCCccC
Confidence 457899998765 3689999999999999999994 9999999999 8899999774 57889999997 89
Q ss_pred EEEEecCCC---CcChhh-------------HHhhhhcccCCC
Q 001094 1077 HVLLLDLWW---NPTTED-------------QAIDRAHRIGQT 1103 (1159)
Q Consensus 1077 ~VI~lD~~W---NP~~e~-------------QAigR~hRiGQt 1103 (1159)
+|||+|.|= +-..+. |.++|+.|-|..
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999999986 444444 455999998864
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=1.7e-08 Score=126.11 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=89.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc--------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------- 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~-------- 1074 (1159)
.+..||||+......+.|...|...|+++..++|. ..+|++.+.+|.. ....|+| +|..+|.|+++.-
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag-~~g~VtI-ATNmAGRGtDI~LgGn~~~~~ 504 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG-RPGAVTI-ATNMAGRGTDIKLGGNPEMLA 504 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC-CCceEEE-ecccccCCcCccCCCchhhhh
Confidence 67899999999999999999999999999999996 6799999999987 5566777 5699999988652
Q ss_pred ------------------------------cCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEE
Q 001094 1075 ------------------------------ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVL 1109 (1159)
Q Consensus 1075 ------------------------------A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~ 1109 (1159)
.=|||.-+.+=|-.++.|..||++|.|..-....|
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 505 AALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 45899999999999999999999999987654443
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.03 E-value=4e-08 Score=124.27 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC-CCcChh
Q 001094 1014 TKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTE 1090 (1159)
Q Consensus 1014 t~~LdlLe~~L~~~--gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~-WNP~~e 1090 (1159)
...+.-+...|+.. ..++...+|.|+..+-++++.+|.+ ++..|||++ ...-.||++..||++|+-+-+ +--+..
T Consensus 813 V~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~-g~~dVLv~T-TIIEtGIDIPnANTiIIe~AD~fGLsQL 890 (1139)
T COG1197 813 VESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN-GEYDVLVCT-TIIETGIDIPNANTIIIERADKFGLAQL 890 (1139)
T ss_pred hhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc-CCCCEEEEe-eeeecCcCCCCCceEEEeccccccHHHH
Confidence 33344444444431 3445678999999999999999999 889999855 788999999999999997654 456778
Q ss_pred hHHhhhhcccCCCCcEEEEEEEeCC-----CHHHHHHHHHH
Q 001094 1091 DQAIDRAHRIGQTRPVSVLRLTVKN-----TVEDRILALQQ 1126 (1159)
Q Consensus 1091 ~QAigR~hRiGQtk~V~V~rLv~~~-----TIEerIl~lq~ 1126 (1159)
-|--|||+|-. +.-+-|-|+..+ .-+.|+..++.
T Consensus 891 yQLRGRVGRS~--~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 891 YQLRGRVGRSN--KQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred HHhccccCCcc--ceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 89999999964 345666666543 23556655554
No 96
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.03 E-value=1.2e-08 Score=128.64 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.|+++|+.++.-.+.. ....|+|--+|.|||+.++..|...-
T Consensus 31 el~~~qq~av~~~~~~------~~N~li~aPTgsGKTlIA~lai~~~l-------------------------------- 72 (766)
T COG1204 31 ELFNPQQEAVEKGLLS------DENVLISAPTGSGKTLIALLAILSTL-------------------------------- 72 (766)
T ss_pred HhhHHHHHHhhccccC------CCcEEEEcCCCCchHHHHHHHHHHHH--------------------------------
Confidence 6899999999866533 13479999999999998876665410
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcC
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 550 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~ 550 (1159)
. ...++.+-|||.. |..+=.+|+.+|-. -.++|.+++|.....+ ..+.
T Consensus 73 --------------------------~--~~~~k~vYivPlkALa~Ek~~~~~~~~~--~GirV~~~TgD~~~~~-~~l~ 121 (766)
T COG1204 73 --------------------------L--EGGGKVVYIVPLKALAEEKYEEFSRLEE--LGIRVGISTGDYDLDD-ERLA 121 (766)
T ss_pred --------------------------H--hcCCcEEEEeChHHHHHHHHHHhhhHHh--cCCEEEEecCCcccch-hhhc
Confidence 0 0134689999996 77888888884322 2799999999876554 6789
Q ss_pred CCCEEEechhhHhh
Q 001094 551 KFDVVITTYSIVSM 564 (1159)
Q Consensus 551 ~~DVVItTY~~l~~ 564 (1159)
++|||||||+-+-.
T Consensus 122 ~~~ViVtT~EK~Ds 135 (766)
T COG1204 122 RYDVIVTTPEKLDS 135 (766)
T ss_pred cCCEEEEchHHhhH
Confidence 99999999998853
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=2.1e-08 Score=124.89 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=95.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc---------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------- 1073 (1159)
.|..||||+......+.|...|...|+++..+++.++..+|+.+..+|+. +. |+| +|..+|.|+++.
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~-G~--VtI-ATnmAGRGTDIkLggn~~~~~ 523 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT-GA--VTI-ATNMAGRGTDIVLGGNWNMEI 523 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC-Cc--EEE-ecCCcCCCcceecCCchHHhh
Confidence 78999999999999999999999999999999999999999999999987 43 555 679999999865
Q ss_pred ----------------------------ccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001094 1074 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124 (1159)
Q Consensus 1074 ----------------------------~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~l 1124 (1159)
+.=|||.-+.+=|-.++.|..||++|.|..-.-..| + |+|+.++.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~-l----SlED~L~r~ 597 (908)
T PRK13107 524 EALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY-L----SMEDSLMRI 597 (908)
T ss_pred hhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE-E----EeCcHHHHH
Confidence 234899999999999999999999999986543332 2 555555543
No 98
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.00 E-value=4.8e-08 Score=111.89 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=98.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...|+|||.--....+-|...|+..++.+..++|+|.+.+|.+.+..|+. ....||+++ +.+..||+...-.+||+||
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~Vlvat-DvaargldI~~ikTVvnyD 544 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPVLVAT-DVAARGLDIPSIKTVVNYD 544 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCceEEEe-eHhhcCCCccccceeeccc
Confidence 34699999999999999999999999999999999999999999999998 566777754 9999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHH
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIE 1118 (1159)
..-.-.+.-|+|||..|-|-+ =..|.|+++...+
T Consensus 545 ~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 545 FARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred ccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 987778888999999999987 3566777766544
No 99
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.99 E-value=1.5e-08 Score=116.72 Aligned_cols=112 Identities=18% Similarity=0.308 Sum_probs=90.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC----------------------CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS----------------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMI 1060 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~----------------------gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLL 1060 (1159)
...|+|||-.-.++.+.=+..|... +.+|.+++|+|++++|..++..|..+... |||
T Consensus 424 ~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~-VLL 502 (708)
T KOG0348|consen 424 EKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA-VLL 502 (708)
T ss_pred hhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce-EEE
Confidence 4558999998888877655555321 34689999999999999999999985444 555
Q ss_pred eeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHH
Q 001094 1061 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1061 lStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIE 1118 (1159)
+|++++.||+|....-||-|||+..++....|+||.-|+|-+-.-.. |+.....|
T Consensus 503 -cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 503 -CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred -ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 66999999999999999999999999999999999999998775433 34444333
No 100
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.98 E-value=3.3e-08 Score=114.75 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=91.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE---
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL--- 1080 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~--- 1080 (1159)
....|||+..+.-...|..+|...|++..-|+++++-.+|..+=..|.. .+..+++ +|.|.|.|+++.+ +.|||
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~VV-TTAAL~AGVDFPA-SQVIFEsL 516 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAAVV-TTAALAAGVDFPA-SQVIFESL 516 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcceEe-ehhhhhcCCCCch-HHHHHHHH
Confidence 4578999999999999999999999999999999999999999999998 6777766 7799999999985 44544
Q ss_pred -ec-CCCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1081 -LD-LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1081 -lD-~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
|- -|.+|....|..||++|.|=...=.||-++-.
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 33 35599999999999999997666667767643
No 101
>PRK09694 helicase Cas3; Provisional
Probab=98.98 E-value=7.7e-08 Score=122.59 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=78.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCC---CcEEecCCCCCHHHH----HHHHHHHhcCCCc--eEEEeeccccccccCcc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFAR----DKAVKDFNTLPEV--SVMIMSLKAASLGLNMV 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~g---i~~~rldGs~s~~~R----~~~v~~F~~d~~~--~VLLlStkagg~GLNL~ 1073 (1159)
.+.++|||++-...+..+...|++.+ ++...++|.++..+| +++++.|..++.. ..+|++|.+...||++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 57899999999999999999998764 678999999999999 5678899443332 2455688999999999
Q ss_pred ccCEEEEecCCCCcChhhHHhhhhcccCCC
Q 001094 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1103 (1159)
Q Consensus 1074 ~A~~VI~lD~~WNP~~e~QAigR~hRiGQt 1103 (1159)
.++.||....+ .....||+||+||-|.+
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 56877775443 45788999999999874
No 102
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.97 E-value=1.2e-07 Score=108.46 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=90.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh--CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD--SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~--~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
..+|+|||-..-...++....|.. ..+.++.++|.|+.++|.+++..|.+. .-.||+ +|+.++.||+....+.||.
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~-~~~vl~-~TDVaARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL-SNGVLF-CTDVAARGLDIPGIDLVVQ 331 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc-cCceEE-eehhhhccCCCCCceEEEe
Confidence 468999999888888888888766 478899999999999999999999983 334555 6799999999999999999
Q ss_pred ecCCCCcChhhHHhhhhcccCCCCcEEE
Q 001094 1081 LDLWWNPTTEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1081 lD~~WNP~~e~QAigR~hRiGQtk~V~V 1108 (1159)
+|||-+|.....|.||..|.|..-.-.|
T Consensus 332 ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 332 FDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred cCCCCChhHHHhhcchhhhccCccceEE
Confidence 9999999999999999999997654333
No 103
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.94 E-value=1.7e-08 Score=115.72 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=90.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
..++|||.+-...+.-|.-.|--.|++...++|+.++.+|-..++.|.+ ..+.||| +|+.++.||+....-+||+|+.
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidvLi-aTDvAsRGLDI~gV~tVINy~m 503 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDVLI-ATDVASRGLDIEGVQTVINYAM 503 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCEEE-EechhhccCCccceeEEEeccC
Confidence 4689999999999999999999999999999999999999999999998 7888888 5599999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQT 1103 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQt 1103 (1159)
|-.-.....|+||.-|-|..
T Consensus 504 P~t~e~Y~HRVGRTARAGRa 523 (691)
T KOG0338|consen 504 PKTIEHYLHRVGRTARAGRA 523 (691)
T ss_pred chhHHHHHHHhhhhhhcccC
Confidence 98888888999998888854
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.93 E-value=9.2e-09 Score=110.40 Aligned_cols=158 Identities=20% Similarity=0.130 Sum_probs=103.5
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHH-HHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIAL-ILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAl-I~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
.++++|++++.-+.+ ++..+++-..|.|||++.+.. +....
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~------------------------------- 62 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLD------------------------------- 62 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHH-------------------------------
Confidence 478999999998884 256899999999999885433 32210
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC-hhh
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCE 548 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~-~~~ 548 (1159)
.........+|||||.. ++.||...+.++... ..+++..++|...... ...
T Consensus 63 --------------------------~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 115 (203)
T cd00268 63 --------------------------PSPKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRK 115 (203)
T ss_pred --------------------------hhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHH
Confidence 00001123589999997 889999999887543 4688888888654322 222
Q ss_pred c-CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCC
Q 001094 549 L-AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627 (1159)
Q Consensus 549 l-~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~ 627 (1159)
+ ...+|+|+|.+.+...+... .
T Consensus 116 ~~~~~~iiv~T~~~l~~~l~~~---------------------------------------------------------~ 138 (203)
T cd00268 116 LKRGPHIVVATPGRLLDLLERG---------------------------------------------------------K 138 (203)
T ss_pred hcCCCCEEEEChHHHHHHHHcC---------------------------------------------------------C
Confidence 3 37899999988875432110 0
Q ss_pred CcccceeEEEEccCcccCCch-hH-HHHHHHhcc-cCcEEEEeccCC
Q 001094 628 LAKVGWFRVVLDEAQSIKNHR-TQ-VARACWGLR-AKRRWCLSGTPI 671 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IKN~~-S~-~~ral~~L~-a~~RwlLTGTPi 671 (1159)
+.--.+.++|+||+|.+.+.. .. ....+..+. ....+++||||-
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 111235689999999986543 22 222233443 567899999997
No 105
>COG4889 Predicted helicase [General function prediction only]
Probab=98.92 E-value=1.2e-08 Score=122.35 Aligned_cols=77 Identities=25% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhc-CC-CceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCc
Q 001094 1028 SIQYRRLDGTMSVFARDKAVKDFNT-LP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1028 gi~~~rldGs~s~~~R~~~v~~F~~-d~-~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
.+...-+||+|+..+|.+.+..=+. .+ +++| |-..+|.++|++..+-+-|||+||--.-....||+||+-|---.|.
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 4455678999999999665544332 23 4554 5578999999999999999999998888888899999999754443
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=2.7e-06 Score=106.92 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=93.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccC------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~------ 1076 (1159)
.+..||||+......+.|...|...||++..+++ ...+|++.+.+|.. ....|+| +|..+|.|+++.-..
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~VtI-ATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGAVTI-ATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCeEEE-eccCcCCCCCcCCccchhhhC
Confidence 6889999999999999999999999999999997 57899999999997 5556666 669999999988322
Q ss_pred --EEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001094 1077 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125 (1159)
Q Consensus 1077 --~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq 1125 (1159)
+||..+.+-+..++.|++||++|.|..-....+ + |.|+.++.+-
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff-v----SleD~Lmr~f 718 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY-V----SLEDELMRLF 718 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE-e----chhHHHHHhh
Confidence 458889999999999999999999986653221 1 5666666543
No 107
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.77 E-value=2.5e-07 Score=102.99 Aligned_cols=269 Identities=19% Similarity=0.195 Sum_probs=153.0
Q ss_pred HhhcCCCCCccc--CCCCCC-CCCCCcHHHHHHHHHHHHhhhcCC---CCccceeecCCCCchhHHHHHHHHhcCCCCCC
Q 001094 371 AMQGISQPNAEA--SAPDGV-LAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFR 444 (1159)
Q Consensus 371 ~l~~~~~~~~~~--~~p~~~-l~~~L~phQ~~gv~wMl~~e~~~~---~~~GGILADemGLGKTlqaIAlI~~~r~~~~~ 444 (1159)
+|..+..|+..+ .+|+.+ -...|-.-|+++|.+..++-...+ .-.|-+|+|.+|.||--++-++|..+.
T Consensus 13 ~lasv~~P~~~y~~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~----- 87 (303)
T PF13872_consen 13 SLASVAPPDPTYRLHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENW----- 87 (303)
T ss_pred hhhcCCCCCCCcccCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHH-----
Confidence 444555454333 334422 123467899999999988765321 237889999999999999988887531
Q ss_pred CccchhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHH
Q 001094 445 TEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRN 524 (1159)
Q Consensus 445 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k 524 (1159)
.. ++.+++-|-+...|..-=.+.+..
T Consensus 88 -----------------------------------------------------l~-Gr~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 88 -----------------------------------------------------LR-GRKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred -----------------------------------------------------Hc-CCCceEEEECChhhhhHHHHHHHH
Confidence 11 122334455555576555556654
Q ss_pred hcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCC
Q 001094 525 KVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPS 604 (1159)
Q Consensus 525 ~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~ 604 (1159)
. .. ..+.+.....-.... . .-.+..|+.+||++|..+..+ +.+
T Consensus 114 I-G~-~~i~v~~l~~~~~~~-~-~~~~~GvlF~TYs~L~~~~~~-----------------------------~~~---- 156 (303)
T PF13872_consen 114 I-GA-DNIPVHPLNKFKYGD-I-IRLKEGVLFSTYSTLISESQS-----------------------------GGK---- 156 (303)
T ss_pred h-CC-CcccceechhhccCc-C-CCCCCCccchhHHHHHhHHhc-----------------------------cCC----
Confidence 2 21 133333333222111 1 123668999999999864211 000
Q ss_pred CCccCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCCchh------HHHHHHHhc----ccCcEEEEeccCCCCC
Q 001094 605 SDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRT------QVARACWGL----RAKRRWCLSGTPIQNA 674 (1159)
Q Consensus 605 ~~~k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S------~~~ral~~L----~a~~RwlLTGTPiqN~ 674 (1159)
.+.. ++.+...+..-.=.+||+||||..||..+ ++..++..| ..-+.+-.|||....
T Consensus 157 -------~~sR-----l~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase- 223 (303)
T PF13872_consen 157 -------YRSR-----LDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE- 223 (303)
T ss_pred -------ccch-----HHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-
Confidence 0000 00000001000113899999999999654 666777655 334678899999843
Q ss_pred hHHHHhchhcc--c-ccCCCchHHHHHHhccCCCCCchhhHHHHHHHHH--HHHHHhccccccCCCCccCCCCcEEEEEE
Q 001094 675 IDDLYSYFRFL--R-YDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLK--TIMLRRTKGTLLDGEPIINLPPKVIMLKQ 749 (1159)
Q Consensus 675 l~DLyslL~fL--~-~~p~~~~~~F~~~i~~pi~~~~~~~~~~L~~lL~--~~mLRRtK~~v~dg~pii~LPpk~~~vv~ 749 (1159)
+..|--+-++- . ..+|.++..|...+. ++....++-+..-|+ ..+++|.. .+-....+++.
T Consensus 224 p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~L----------Sf~gvef~~~e 289 (303)
T PF13872_consen 224 PRNMAYMSRLGLWGPGTPFPDFDDFLEAME----KGGVGAMEMVAMDLKARGMYIARQL----------SFEGVEFEIEE 289 (303)
T ss_pred CceeeeeeeccccCCCCCCCCHHHHHHHHH----hcCchHHHHHHHHHHhcchheeeec----------ccCCceEEEEE
Confidence 34443333321 1 135777788877664 233333333333333 34566654 45566788999
Q ss_pred ecCCHHHHHHHHH
Q 001094 750 VDFTDEERDFYSQ 762 (1159)
Q Consensus 750 v~ls~~Er~~Y~~ 762 (1159)
+++++++.+.|+.
T Consensus 290 ~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 290 VPLTPEQIKMYDA 302 (303)
T ss_pred ecCCHHHHHHhcC
Confidence 9999999999974
No 108
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=8.7e-07 Score=108.45 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=86.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc---------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------- 1073 (1159)
.|.-|||.+......+.|...|.+.||++..++.... ++-..+|.+= +..--+.++|..+|.|-++.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A---G~~gaVTIATNMAGRGTDIkLg~~~~~~~ 501 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA---GKYGAVTVSTQMAGRGTDIRLGGSDEADR 501 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc---CCCCcEEEEecCCCCccCeecCCCcccch
Confidence 7899999999999999999999999999999988743 3334444432 33334455779999997765
Q ss_pred ------ccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001094 1074 ------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125 (1159)
Q Consensus 1074 ------~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq 1125 (1159)
+.=|||.-+.+=|-.++.|..||+.|.|..-....|- |+|+.++.+-
T Consensus 502 ~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f 554 (764)
T PRK12326 502 DRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAAN 554 (764)
T ss_pred HHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhc
Confidence 3458999999999999999999999999866543332 5566555443
No 109
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.71 E-value=6.8e-08 Score=100.11 Aligned_cols=158 Identities=21% Similarity=0.260 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccccccc
Q 001094 395 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 474 (1159)
Q Consensus 395 phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 474 (1159)
|+|.+++.-+.+. +-.++.-.+|.|||..++-.+...-
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~----------------------------------- 39 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRL----------------------------------- 39 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhh-----------------------------------
Confidence 7999999988721 2369999999999998875443210
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-C-hhhc-C
Q 001094 475 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-D-PCEL-A 550 (1159)
Q Consensus 475 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~-~~~l-~ 550 (1159)
.. ...+.+||++|.. ++.|=.+++.+++.. ..+++..++|..... + ...+ .
T Consensus 40 -----------------------~~-~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T PF00270_consen 40 -----------------------QE-GKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSN 94 (169)
T ss_dssp -----------------------HT-TSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHT
T ss_pred -----------------------cc-CCCceEEEEeecccccccccccccccccc-cccccccccccccccccccccccc
Confidence 00 1123589999986 889999999988764 357888888765432 1 1223 4
Q ss_pred CCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCcc
Q 001094 551 KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAK 630 (1159)
Q Consensus 551 ~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~ 630 (1159)
..+|+|+|++.|...+.. . ...+
T Consensus 95 ~~~ilv~T~~~l~~~~~~-----------------~--------------------------------------~~~~-- 117 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISN-----------------G--------------------------------------KINI-- 117 (169)
T ss_dssp TSSEEEEEHHHHHHHHHT-----------------T--------------------------------------SSTG--
T ss_pred cccccccCcchhhccccc-----------------c--------------------------------------cccc--
Confidence 799999999999753210 0 0002
Q ss_pred cceeEEEEccCcccCCc--hhHHHHHHHhc---ccCcEEEEeccCCCCChHH
Q 001094 631 VGWFRVVLDEAQSIKNH--RTQVARACWGL---RAKRRWCLSGTPIQNAIDD 677 (1159)
Q Consensus 631 i~w~rVIlDEAH~IKN~--~S~~~ral~~L---~a~~RwlLTGTPiqN~l~D 677 (1159)
....+||+||+|.+-.. .......+..+ ...+.+++||||- .++++
T Consensus 118 ~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 118 SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred ccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 22578999999998653 22233333333 3467899999997 55554
No 110
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.69 E-value=5.5e-07 Score=117.39 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCc---EEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQ---YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1079 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~---~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI 1079 (1159)
...++|||..-...++.+...|...+++ ++-++|.++.++|.++++. .+..+|+ ++|..+..||++....+||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkII-VATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRIV-LATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeEE-EeccHHhhccccCcceEEE
Confidence 4568999999999999999999988765 5678999999999988664 3445555 4789999999999999999
Q ss_pred Eec---------------CCCCc---ChhhHHhhhhcccCCCCcEEEEEEEeCCCHH
Q 001094 1080 LLD---------------LWWNP---TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1080 ~lD---------------~~WNP---~~e~QAigR~hRiGQtk~V~V~rLv~~~TIE 1118 (1159)
.++ ++-.| +...||.||++|. ++=..|+|+++...+
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 974 33333 4566777777776 466788999876443
No 111
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.68 E-value=6.5e-07 Score=117.09 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=85.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCC---CcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~g---i~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
..++|||..-...++.+...|...+ +.+.-++|.++.++|.++++.+ +..+| |++|..+..||++....+||.
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkI-VLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRI-VLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceE-EEeccHHHhccccCCeeEEEe
Confidence 4689999999999999999998764 4578899999999999885433 33455 557899999999999999998
Q ss_pred ecCC----C--------------CcChhhHHhhhhcccCCCCcEEEEEEEeCCCHH
Q 001094 1081 LDLW----W--------------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1081 lD~~----W--------------NP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIE 1118 (1159)
++.. + +-+...||.||++|.| +=.+|||+++...+
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 7632 2 2245679999999987 66788999876543
No 112
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.64 E-value=2.6e-07 Score=102.92 Aligned_cols=107 Identities=20% Similarity=0.267 Sum_probs=93.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC
Q 001094 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084 (1159)
Q Consensus 1005 ~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~ 1084 (1159)
...|||++-..++.+|+..|...|.++..++|.+...+|.+++++|+. +..+||| +|...+.|++.+..+.||.||++
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kVLi-tTnV~ARGiDv~qVs~VvNydlP 408 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKVLI-TTNVCARGIDVAQVSVVVNYDLP 408 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceEEE-EechhhcccccceEEEEEecCCc
Confidence 467999999999999999999999999999999999999999999998 7778887 67999999999999999999998
Q ss_pred C------CcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1085 W------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1085 W------NP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
- .+.+...||||.+|.|.+- +-+- |+-.+
T Consensus 409 ~~~~~~pD~etYlHRiGRtGRFGkkG-~a~n-~v~~~ 443 (477)
T KOG0332|consen 409 VKYTGEPDYETYLHRIGRTGRFGKKG-LAIN-LVDDK 443 (477)
T ss_pred cccCCCCCHHHHHHHhcccccccccc-eEEE-eeccc
Confidence 4 3557789999999999654 4444 55433
No 113
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.57 E-value=1.7e-06 Score=97.90 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=73.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHH------------HHHh--cCCCceEEEeecccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAV------------KDFN--TLPEVSVMIMSLKAASL 1068 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v------------~~F~--~d~~~~VLLlStkagg~ 1068 (1159)
.+-++||.++-..++|+||.+|...++.|.|++|.+-.++....- .... ....+.|.|+++.-...
T Consensus 116 ~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~ 195 (297)
T PF11496_consen 116 YPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYN 195 (297)
T ss_dssp SSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---T
T ss_pred CCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccc
Confidence 578999999999999999999999999999999987544443332 0111 11356777877554433
Q ss_pred ----ccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001094 1069 ----GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1126 (1159)
Q Consensus 1069 ----GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~ 1126 (1159)
.++-...+-||-+|+.+++....-..-|.+.-.+ +.+-|+||++.+|+|-.++....
T Consensus 196 ~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 196 NKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp TTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred cCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 2334466889999999999887655555443333 78999999999999988877666
No 114
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.54 E-value=6.3e-06 Score=102.28 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=63.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcCh----------hhHHhhhhcccCCC
Q 001094 1034 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT----------EDQAIDRAHRIGQT 1103 (1159)
Q Consensus 1034 ldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~----------e~QAigR~hRiGQt 1103 (1159)
-+.+|...+|...=+.|.. +.++||. +|...+-|+||.+-..+|-=-+.|++.. ..|-+|||+|.+=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~-G~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKE-GHIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhc-CCceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 4578889999999999998 7888887 5589999999998777776666677665 56999999998654
Q ss_pred CcEEEEEEEeCCCHH
Q 001094 1104 RPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1104 k~V~V~rLv~~~TIE 1118 (1159)
..=..+-+.+.++++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 444555555555543
No 115
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.49 E-value=3.7e-07 Score=101.57 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=103.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
.-+||||+.-..-.|-|.++|--.|+..+.++|+-.+++|..+|..|+. +.-.||+ .|+.++-||+++...|||+||.
T Consensus 421 ~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~-gkKDVLV-ATDVASKGLDFp~iqHVINyDM 498 (610)
T KOG0341|consen 421 SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA-GKKDVLV-ATDVASKGLDFPDIQHVINYDM 498 (610)
T ss_pred CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc-CCCceEE-EecchhccCCCccchhhccCCC
Confidence 4589999999999999999999999999999999999999999999998 6667777 5599999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHH----HHHHHHHH
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA----LQQKKREM 1131 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~----lq~~K~~l 1131 (1159)
+-.-.....||||.+|-|.+-- -..|+-+++-|..+++ +++.|+++
T Consensus 499 P~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlDLK~LL~EakQ~v 548 (610)
T KOG0341|consen 499 PEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLDLKHLLQEAKQEV 548 (610)
T ss_pred hHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHHHHHHHHHhhccC
Confidence 8777777788888888887653 3346667766655554 45566653
No 116
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.49 E-value=3.1e-06 Score=105.71 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=91.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...|+|||++--.-+|.|.+.|.+.|+....++|..+..+|...+..|++ +.+.+|| .|...+.||+...-..||+||
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~-~~~~LLv-aTsvvarGLdv~~l~Lvvnyd 689 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN-GVVNLLV-ATSVVARGLDVKELILVVNYD 689 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc-cCceEEE-ehhhhhcccccccceEEEEcc
Confidence 36799999999999999999999999999999999999999999999998 4555555 668999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
.+=.-.....|.||..|-|.+- .-|.|+..
T Consensus 690 ~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 690 FPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred cchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9866666778888888877665 44445554
No 117
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.47 E-value=6e-06 Score=105.49 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=97.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
+++-.||||....+.+.+...|...|+....|+++|+..+|+.+.++|.. ++++|++++ =|.|-|+|-....-||+|.
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~VivAT-VAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRVIVAT-VAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeEEEEE-eeccCCCCCCceeEEEECC
Confidence 67788999999999999999999999999999999999999999999999 568877755 8999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLR 1110 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~r 1110 (1159)
.+=+---.-|..|||+|-|+-...+.|+
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEec
Confidence 9988888889999999999988755554
No 118
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.45 E-value=1.5e-06 Score=108.62 Aligned_cols=109 Identities=25% Similarity=0.298 Sum_probs=93.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.|...|...|+++..++|.++..+|.++++.|.. +.+.|++ ++...+.|+++..++.||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~VLV-~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceEEE-EcChhcCCeeeCCCcEEEEeC
Confidence 68899999999999999999999999999999999999999999999987 7787776 568999999999999999999
Q ss_pred C-----CCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~-----~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
. +=+.....|++||+.|.. .- .|+-|+...|
T Consensus 519 adifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~ 554 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKIT 554 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCC
Confidence 3 446778899999999973 22 3455555544
No 119
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=3.2e-05 Score=97.35 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=85.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHH-HHHHHHhcCCCceEEEeeccccccccCcc--------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-KAVKDFNTLPEVSVMIMSLKAASLGLNMV-------- 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~-~~v~~F~~d~~~~VLLlStkagg~GLNL~-------- 1073 (1159)
.+.-|||-+.....-+.|...|.+.||++..++... .+++ .+|.+ .+..--+.++|..+|.|-++.
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~--~~~Ea~iia~---AG~~g~VTIATNmAGRGTDIkl~~~v~~~ 641 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKN--HAQEAEIIAG---AGKLGAVTVATNMAGRGTDIKLDEEAVAV 641 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccch--hhhHHHHHHh---cCCCCcEEEeeccccCCcccccCchHHhc
Confidence 688999999999999999999999999999998873 3444 34433 233334455779999997754
Q ss_pred ccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001094 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124 (1159)
Q Consensus 1074 ~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~l 1124 (1159)
+.=|||.-+.+-|..++.|..||+.|.|..-....|- ++|+.++.+
T Consensus 642 GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 642 GGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred CCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 3458999999999999999999999999866533322 556666654
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.42 E-value=2e-05 Score=100.57 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=97.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhc---CCCceEEEeeccccccccCccccCEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT---LPEVSVMIMSLKAASLGLNMVAACHVL 1079 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~---d~~~~VLLlStkagg~GLNL~~A~~VI 1079 (1159)
.+.|++|-.+-...+.-++..|+..+.+++.|++.+...+|.+.++...+ ..+.. ++++|++.-+|+++. .+ ++
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid-fd-~m 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID-FD-VL 515 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-cC-ee
Confidence 57899999999999999999999987789999999999999999886653 23444 455889999999998 44 44
Q ss_pred EecCCCCcChhhHHhhhhcccC--CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 001094 1080 LLDLWWNPTTEDQAIDRAHRIG--QTRPVSVLRLTVKNTVEDRILALQQKKREMV 1132 (1159)
Q Consensus 1080 ~lD~~WNP~~e~QAigR~hRiG--Qtk~V~V~rLv~~~TIEerIl~lq~~K~~l~ 1132 (1159)
+-|+. -.....||.||++|-| ....+.|+...-......+.++....+....
T Consensus 516 ITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 516 ITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred eecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 44442 2356789999999999 5566888877777777777666666555543
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.37 E-value=4.5e-06 Score=105.02 Aligned_cols=107 Identities=24% Similarity=0.317 Sum_probs=92.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.|...|...|+++..++|.++..+|..++..|.. +.+.|++ ++...+.|+++..++.||++|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~vlV-~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceEEE-EeCHHhCCccccCCcEEEEeC
Confidence 68899999999999999999999999999999999999999999999987 6777766 669999999999999999999
Q ss_pred C-----CCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1083 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~-----~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
. +-++....|++||+.|- . + =.++.|+..
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~-~-~-G~~i~~~~~ 556 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARN-V-N-GKVILYADK 556 (652)
T ss_pred CcccccCCCHHHHHHHhccccCC-C-C-CEEEEEecC
Confidence 6 34778899999999994 3 2 234555553
No 122
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.34 E-value=5.8e-07 Score=98.09 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=93.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.-...|||+..+...++|+..+.+.|+....++..|.++.|.++..+|.+ +.++.|++| +..-.|++.|+.|.||.+|
T Consensus 321 qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crnLVct-DL~TRGIDiqavNvVINFD 398 (459)
T KOG0326|consen 321 QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRNLVCT-DLFTRGIDIQAVNVVINFD 398 (459)
T ss_pred cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccceeeeh-hhhhcccccceeeEEEecC
Confidence 34578999999999999999999999999999999999999999999999 899999977 8999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQT 1103 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQt 1103 (1159)
.+-|+.....||||.+|.|--
T Consensus 399 fpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 399 FPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred CCCCHHHHHHHccCCccCCCc
Confidence 999999999999999999953
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=1.7e-05 Score=99.58 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=80.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc---------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------- 1073 (1159)
.|.-|||-+......+.|...|...||++-.++.... ++++.|-+ +. +..--+.++|..+|.|-++.
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~A-G~~GaVTIATNMAGRGTDIkLg~n~~~~~ 523 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QA-GRPGALTIATNMAGRGTDILLGGNWEVEV 523 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cC-CCCCcEEEeccCCCCCCCEecCCchHHHH
Confidence 7899999999999999999999999999988887643 44444433 22 43334445779999997764
Q ss_pred ----------------------------ccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEE
Q 001094 1074 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1074 ----------------------------~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V 1108 (1159)
+.=|||.-+.+=|-.++.|..||+.|.|..-....
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 524 AALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred HhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 34589999999999999999999999998665433
No 124
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.34 E-value=8.6e-07 Score=98.41 Aligned_cols=92 Identities=24% Similarity=0.273 Sum_probs=77.3
Q ss_pred HHHHHHhcCCCceEEEeeccccccccCcccc-------CEE-EEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1045 KAVKDFNTLPEVSVMIMSLKAASLGLNMVAA-------CHV-LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1045 ~~v~~F~~d~~~~VLLlStkagg~GLNL~~A-------~~V-I~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
...++|++ ++..|+|+| +|||.|++|++- -|| |.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 56779998 688999998 999999999953 234 67999999999999999999999999876666777778
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q 001094 1117 VEDRILALQQKKREMVASAFGE 1138 (1159)
Q Consensus 1117 IEerIl~lq~~K~~l~~~~lg~ 1138 (1159)
.|.|......+|.+-..+....
T Consensus 130 gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHHHHHHHhhccccccC
Confidence 8999999999998877655433
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.32 E-value=0.00077 Score=79.23 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=101.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.++++||-+=-..|++-|.++|.+.|+++..++.....-+|..++.+.+. +.+.||+ ...-.-+||+|..++-|.++|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~DvLV-GINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccEEE-eehhhhccCCCcceeEEEEee
Confidence 68999999999999999999999999999999999999999999999998 7888887 578899999999999999999
Q ss_pred CC-----CCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 001094 1083 LW-----WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1127 (1159)
Q Consensus 1083 ~~-----WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~ 1127 (1159)
.+ -+-...+|-|||+-|--.- .|..|-=.+.++++.-|-+...+
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred cCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 76 4778899999999994322 25444444455666666655443
No 126
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.27 E-value=9.2e-05 Score=89.25 Aligned_cols=81 Identities=28% Similarity=0.358 Sum_probs=61.9
Q ss_pred HHHhcCCCceEEEeeccccccccCccccCEE--------EEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHH
Q 001094 1048 KDFNTLPEVSVMIMSLKAASLGLNMVAACHV--------LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119 (1159)
Q Consensus 1048 ~~F~~d~~~~VLLlStkagg~GLNL~~A~~V--------I~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEe 1119 (1159)
++|-+ ++-.|-|+| .|++.|+.||.-.+| |-++++|....-+|-+||.||-.|......+.||.+=-=|.
T Consensus 851 qrFM~-GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 851 QRFMD-GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred hhhcc-ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 46766 777788888 899999999965443 55999999999999999999999988777666776544455
Q ss_pred HHHHHHHHHHH
Q 001094 1120 RILALQQKKRE 1130 (1159)
Q Consensus 1120 rIl~lq~~K~~ 1130 (1159)
|...+..++.+
T Consensus 929 RFAS~VAKRLE 939 (1300)
T KOG1513|consen 929 RFASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
No 127
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.24 E-value=9.8e-05 Score=92.14 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=86.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcccc-------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA------- 1075 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A------- 1075 (1159)
.+.-|||.+......+.|...|.+.||++..++... .++++.|-+ +. +..--+.++|..+|.|-++.-.
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~A-G~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KA-GQKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hC-CCCCeEEEecccccCCcCccCchhHHHcC
Confidence 688999999999999999999999999999998873 345554443 23 4444445577999999887633
Q ss_pred -CEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001094 1076 -CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1124 (1159)
Q Consensus 1076 -~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~l 1124 (1159)
=|||..+.+=|-.++.|..||++|.|..-....| + |+|+.++.+
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-l----SLeD~L~r~ 545 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-I----SLDDQLFRR 545 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEE-E----ecchHHHHH
Confidence 3999999999999999999999999986654333 2 455555543
No 128
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.20 E-value=0.0022 Score=71.83 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=75.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC-CC-cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS-SI-QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~-gi-~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
.+.-++||..-..++..+...|+.. +. +...++.. ...|.+.|.+|++ +...+|| +|...-.|+.+...+..++
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~-G~~~lLi-TTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRD-GKITLLI-TTTILERGVTFPNVDVFVL 379 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHc-CceEEEE-EeehhhcccccccceEEEe
Confidence 5788999999999999999999542 22 22233333 3679999999998 7776666 7789999999999998887
Q ss_pred ecCC--CCcChhhHHhhhhcccCC
Q 001094 1081 LDLW--WNPTTEDQAIDRAHRIGQ 1102 (1159)
Q Consensus 1081 lD~~--WNP~~e~QAigR~hRiGQ 1102 (1159)
=.-. +..+...|--||++|---
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCCc
Confidence 5444 888999999999999644
No 129
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.16 E-value=5.7e-06 Score=92.04 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
....++||.|-+....+|...|+..++....+++-|++.+|-+++.+|+. ...++||++ ++++.||+.....-||++|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~iliaT-DVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARILIAT-DVASRGLDIPTVELVVNHD 330 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccEEEEe-chhhcCCCCCceeEEEecC
Confidence 56789999999999999999999999999999999999999999999998 678888854 9999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCc
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
.+-.|.....|+||.-|-|..-.
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999988886543
No 130
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.12 E-value=0.00015 Score=92.21 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=36.0
Q ss_pred CEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 001094 1076 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1130 (1159)
Q Consensus 1076 ~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~ 1130 (1159)
++||+|||.-..-+..|. -|++|.|. ++.||-|+..+|+||.-+....+|.+
T Consensus 478 ~~VImYEP~~sfIR~IEv-yra~r~~r--~~rVyfL~y~~S~EEq~yl~sirrEK 529 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEV-YKASRPLR--PLRVYFLYYGGSIEEQRYLTSLRREK 529 (814)
T ss_pred CEEEEECCChHHHHHHHH-HHccCCCC--CcEEEEEEECCcHHHHHHHHHHHHHH
Confidence 899999996555555552 24445443 48999999999999976555554433
No 131
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.11 E-value=1.7e-05 Score=93.84 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=90.8
Q ss_pred eEEEEcCcHHHHHHHHHHH-hhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC
Q 001094 1006 KAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084 (1159)
Q Consensus 1006 KvIIFSq~t~~LdlLe~~L-~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~ 1084 (1159)
.+|||.|...-...|...| .-.+|.+-.++|..+..+|+..+++|.. +.+.||+++ ...+.|+++.+++.||+||.+
T Consensus 389 P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~IwvLicT-dll~RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWVLICT-DLLARGIDFKGVNLVINYDFP 466 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeEEEeh-hhhhccccccCcceEEecCCC
Confidence 6899999999999999999 6789999999999999999999999999 899999965 999999999999999999999
Q ss_pred CCcChhhHHhhhhcccCCCCc
Q 001094 1085 WNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1085 WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
=.-.....+|||.+|-|+.-.
T Consensus 467 ~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 467 QSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred chhHHHHHHhhccCCCCCCcc
Confidence 888888999999999998653
No 132
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1e-05 Score=91.36 Aligned_cols=109 Identities=19% Similarity=0.304 Sum_probs=98.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
-...+||+...+-++.|...|..+++....++|.|...+|+.+++.|+. +..+||| ++.-.+.|++++..+-||.||+
T Consensus 263 ~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrvlI-ttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 263 VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRVLI-TTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceEEe-eccccccccchhhcceeeeecc
Confidence 3688999999999999999999999999999999999999999999998 7888888 6689999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
+=|......++||..|.|-+- .+..++++.+
T Consensus 341 P~~~~~yihR~gr~gr~grkg--~~in~v~~~d 371 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKG--VAINFVTEED 371 (397)
T ss_pred ccchhhhhhhcccccccCCCc--eeeeeehHhh
Confidence 999999999999999999643 4455666653
No 133
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.03 E-value=0.00022 Score=89.20 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCcEEecCCCCCHH--HHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC---CCcC---------hhhHH
Q 001094 1028 SIQYRRLDGTMSVF--ARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNPT---------TEDQA 1093 (1159)
Q Consensus 1028 gi~~~rldGs~s~~--~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~---WNP~---------~e~QA 1093 (1159)
+.++.|+|+.++.. .-+.++..|.+ ++..||| -|....-|+|+..-.-|.++|.| .+|. ...|+
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~-ge~dILi-GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qv 583 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFAN-GEADILI-GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQV 583 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhC-CCCCeee-cchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHH
Confidence 56778888887653 45688999998 7888888 55999999999998888877655 2332 44599
Q ss_pred hhhhcccCCCCcEEEEEEEeCC
Q 001094 1094 IDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1094 igR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
.||++|-+-.-.|.+-.+....
T Consensus 584 aGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 584 AGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HhhhccCCCCCeEEEEeCCCCc
Confidence 9999998766667776665554
No 134
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00015 Score=90.62 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=63.1
Q ss_pred CceEEEEcCc---HHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccc---cccCcc-ccC
Q 001094 1004 GEKAIVFSQW---TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS---LGLNMV-AAC 1076 (1159)
Q Consensus 1004 ~~KvIIFSq~---t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg---~GLNL~-~A~ 1076 (1159)
|.-.|||.+- ...++.|..+|+.+|++...+... +.+.++.|.. +++.||+....--| .||+|. ...
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~-GeidvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE-GEVDVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc-CceeEEEEecccccceeecCCchhhee
Confidence 5578999998 899999999999999999887663 3788999998 89999997644434 599997 888
Q ss_pred EEEEecCC
Q 001094 1077 HVLLLDLW 1084 (1159)
Q Consensus 1077 ~VI~lD~~ 1084 (1159)
++||+..|
T Consensus 409 YaIF~GvP 416 (1187)
T COG1110 409 YAVFYGVP 416 (1187)
T ss_pred EEEEecCC
Confidence 99999887
No 135
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.4e-05 Score=84.65 Aligned_cols=55 Identities=36% Similarity=0.896 Sum_probs=46.9
Q ss_pred hccccccCCCCCCccchhcccCccchhhhHHhhhhcCC--CCCCCccccccccccchhh
Q 001094 837 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADD--NQCPTRNCKIRLSLSSVFS 893 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~--~~Cp~~~c~~~~~~~~vf~ 893 (1159)
...+.|.||.|...+||+|.|||+||.-|+..|+.... ..||+ |+..++.++|..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPV--CK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPV--CKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCc--cccccccceEEe
Confidence 45688999999999999999999999999999998755 45676 988888777654
No 136
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.70 E-value=0.0014 Score=83.30 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=57.0
Q ss_pred CcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE-----ecCC---C---CcChhhHHhhhh
Q 001094 1029 IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-----LDLW---W---NPTTEDQAIDRA 1097 (1159)
Q Consensus 1029 i~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~-----lD~~---W---NP~~e~QAigR~ 1097 (1159)
+.|..-+.+|+..+|+..=+-|.+ +.++||+ ||...+-|+||.+ ++||+ |||. | .|....|..||+
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~-g~iqvlv-statlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFAD-GHIQVLV-STATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhc-CceeEEE-eehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 456677899999999999889987 8899888 8899999999985 55655 5554 4 466778999999
Q ss_pred cccC
Q 001094 1098 HRIG 1101 (1159)
Q Consensus 1098 hRiG 1101 (1159)
+|.+
T Consensus 685 grp~ 688 (1674)
T KOG0951|consen 685 GRPQ 688 (1674)
T ss_pred CCCc
Confidence 9975
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.69 E-value=0.0015 Score=82.43 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=49.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHH-HHHHHHhcCCCceEEEeeccccccccC
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-KAVKDFNTLPEVSVMIMSLKAASLGLN 1071 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~-~~v~~F~~d~~~~VLLlStkagg~GLN 1071 (1159)
.+.-|||-+.....-+.|...|...|+++..++......+++ .+|.+ .+..--+.++|..+|.|-+
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTD 489 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTD 489 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcC
Confidence 789999999999999999999999999999999874333344 44443 1333334446688888844
No 138
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.64 E-value=0.01 Score=75.73 Aligned_cols=112 Identities=15% Similarity=0.216 Sum_probs=84.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc--------c
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------A 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------~ 1074 (1159)
.|.-|||-+.....-++|.+.|...||++-.++.... ++++.|-+=. +..-.+-++|..+|.|-+.. +
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~A--G~~GaVTIATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEA--GQPGTVTIATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhc--CCCCcEEEeccCcCCCcCcccchhhHHcC
Confidence 7899999999999999999999999999988887643 4444433322 33333444678999997765 4
Q ss_pred cCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHH
Q 001094 1075 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1123 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~ 1123 (1159)
.=|||.-+.+=+..++.|..||++|.|..-....| + |+|+.++.
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~-l----SLEDdLmr 746 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY-V----SLEDNLMR 746 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE-E----EcccHHHH
Confidence 57899999999999999999999999986543332 2 44554444
No 139
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.64 E-value=0.0015 Score=73.07 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=90.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.|..-|||+-...--+.+...|+.+||...-|+..+.+.+|.-+-+.|-. +++.|++.+ -+.|.|++-.....||+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqvivat-vafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQVIVAT-VAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEEEEEE-eeecccCCCCCeeEEEecc
Confidence 46667888888888889999999999999999999999999998888887 789998855 7899999999999999998
Q ss_pred CCCCcChhhH-------------------------------------------HhhhhcccCCCCcEEEEE
Q 001094 1083 LWWNPTTEDQ-------------------------------------------AIDRAHRIGQTRPVSVLR 1110 (1159)
Q Consensus 1083 ~~WNP~~e~Q-------------------------------------------AigR~hRiGQtk~V~V~r 1110 (1159)
++-.-...-| --||++|-||+.++..|+
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy 464 (695)
T KOG0353|consen 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYY 464 (695)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEe
Confidence 8876666667 458899999998866655
No 140
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.61 E-value=3.4e-05 Score=80.43 Aligned_cols=52 Identities=38% Similarity=0.815 Sum_probs=43.0
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhc---------------CCCCCCCccccccccccchh
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA---------------DDNQCPTRNCKIRLSLSSVF 892 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~---------------~~~~Cp~~~c~~~~~~~~vf 892 (1159)
...|+||.+...+++++.|||.||..||..|+.. ....||. |+..+....++
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv--CR~~Is~~~Lv 84 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV--CKSDVSEATLV 84 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC--CCCcCChhcEE
Confidence 4689999999999999999999999999998752 2346886 99888766554
No 141
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.57 E-value=0.0054 Score=76.38 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=51.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC---------CCCcChhhHHhhhhcccCCCC
Q 001094 1034 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL---------WWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1034 ldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~---------~WNP~~e~QAigR~hRiGQtk 1104 (1159)
-+|+.=+--++-+=--|+. +=++||+ +|...+-|+|+.+-+.||- .+ ..+|....|.-|||+|-|=-.
T Consensus 636 HH~GlLPivKE~VE~LFqr-GlVKVLF-ATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~ 712 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQR-GLVKVLF-ATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDE 712 (1248)
T ss_pred hcccchHHHHHHHHHHHhc-CceEEEe-ehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCc
Confidence 4566544444444446776 7788887 5699999999997665543 21 268999999999999999755
Q ss_pred cEEEE
Q 001094 1105 PVSVL 1109 (1159)
Q Consensus 1105 ~V~V~ 1109 (1159)
.=+|.
T Consensus 713 tGTVi 717 (1248)
T KOG0947|consen 713 TGTVI 717 (1248)
T ss_pred CceEE
Confidence 54444
No 142
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.56 E-value=0.00012 Score=85.77 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=91.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
-+.+.|||++..+-+..|.-+|...+|+..-++..|.+++|-+.+++|.+.+. -||| .|++++.||+.+...|||+|.
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~-~VLi-aTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS-GVLI-ATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC-eEEE-eehhhhccCCCCCcceEEEee
Confidence 36699999999999999999999999999999999999999999999998544 3555 569999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V 1108 (1159)
.+-.-.....|-||.-|-+. ..|.|
T Consensus 540 VPrtseiYVHRSGRTARA~~-~Gvsv 564 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANS-EGVSV 564 (731)
T ss_pred cCCccceeEecccccccccC-CCeEE
Confidence 99999999999999999764 33444
No 143
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.52 E-value=0.00077 Score=67.65 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=24.7
Q ss_pred CcccceeEEEEccCcccCCchhHHHHHHH-hc-cc--CcEEEEeccCCC
Q 001094 628 LAKVGWFRVVLDEAQSIKNHRTQVARACW-GL-RA--KRRWCLSGTPIQ 672 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IKN~~S~~~ral~-~L-~a--~~RwlLTGTPiq 672 (1159)
.....|++||+||+|.. ++.|-..+-.. .+ .. ...+.+||||--
T Consensus 91 ~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 91 CRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp SCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred ccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 33467999999999973 34444333322 22 22 367999999953
No 144
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.47 E-value=6.1e-05 Score=58.70 Aligned_cols=37 Identities=46% Similarity=1.051 Sum_probs=31.8
Q ss_pred ccCCCCCCccc-hhcccCccchhhhHHhhhhcCCCCCCC
Q 001094 842 CGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 842 C~iC~~~~~~~-~i~~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
|+||.+.+.++ +++.|||+||.+|+..++.. ...||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 88999999999 68999999999999999988 678885
No 145
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.43 E-value=7.2e-05 Score=64.65 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=40.4
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
..|++|.+.+.+|++++|||+||.+||.+++.. ...||. |+..++...
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~--~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPV--TGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCC--CcCCCChhh
Confidence 369999999999999999999999999999977 678987 555554433
No 146
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=6.8e-05 Score=76.08 Aligned_cols=52 Identities=38% Similarity=0.901 Sum_probs=39.8
Q ss_pred ccccccCCCCCCcc--chhcccCccchhhhHHhhhhcCCCCCCCccccccccccchh
Q 001094 838 SLAICGICNDPPED--AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 892 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~--~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf 892 (1159)
..+.|+||++..+. ++-+.|||+||.+||.+.+. ....||. |+.++....+|
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~--C~kkIt~k~~~ 183 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPT--CRKKITHKQFH 183 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCC--cccccchhhhe
Confidence 45789999998765 45689999999999998775 4578998 66565554443
No 147
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.40 E-value=0.0003 Score=80.60 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=93.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeec--------------------
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL-------------------- 1063 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlSt-------------------- 1063 (1159)
..|+|||.+-.+.---|.-+|++.||+.+.++|.++...|-.++++||. +-+.++|+|-
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEEccCccchhhhhccccccccccC
Confidence 4699999999999999999999999999999999999999999999998 7778888764
Q ss_pred ----c-c---------cccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1064 ----K-A---------ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1064 ----k-a---------gg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
+ + .+.|++++..+.||+||.+-++...+.|+||..|-|.+-. +.-|+..
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt--alSfv~P 409 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT--ALSFVSP 409 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCc--eEEEecc
Confidence 0 1 2469999999999999999999999999999999776553 3344444
No 148
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.39 E-value=0.00039 Score=79.01 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=84.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC---CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1079 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~---gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI 1079 (1159)
.-.|.|||+.-..--|-|++++.+. .+..+.++|...+.+|.+.++.|.. .+++.||++ +.++.||+++..-.||
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvkflict-dvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVKFLICT-DVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeEEEEEe-hhhhccccccCCceEE
Confidence 5689999999999999999999875 3567889999999999999999998 778777755 9999999999999999
Q ss_pred EecCCCCcChhhHHhhhhccc
Q 001094 1080 LLDLWWNPTTEDQAIDRAHRI 1100 (1159)
Q Consensus 1080 ~lD~~WNP~~e~QAigR~hRi 1100 (1159)
.+-++-.-.....||||+.|-
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999998888888888877763
No 149
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=7.7e-05 Score=81.29 Aligned_cols=51 Identities=29% Similarity=0.777 Sum_probs=44.0
Q ss_pred ccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccch
Q 001094 838 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~v 891 (1159)
....|.+|.+...+|-.++|||+||..||.+|.....+ ||. ||..+..+.+
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CPl--CR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CPL--CREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CCc--ccccCCCcce
Confidence 34679999999999999999999999999999876655 887 9988877654
No 150
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.29 E-value=0.00015 Score=57.44 Aligned_cols=38 Identities=37% Similarity=0.836 Sum_probs=30.0
Q ss_pred ccCCCCCCccchhcccCccchhhhHHhhhhcCCC---CCCC
Q 001094 842 CGICNDPPEDAVVSICGHVFCNQCICERLTADDN---QCPT 879 (1159)
Q Consensus 842 C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~---~Cp~ 879 (1159)
|+||.+...+|+...|||.||..|+..++..... .||.
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~ 41 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPE 41 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcC
Confidence 8999999999999999999999999999876543 4653
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.27 E-value=0.012 Score=74.49 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCC-CCHHHHHHHHHHHhcCCCceEEEeeccccccccC
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT-MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLN 1071 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs-~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLN 1071 (1159)
.|.-|||-+.....-+.|...|.+.|+++..++.. ...+.-..+|.+= +..--+-++|..+|.|-+
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A---G~~GaVTIATNMAGRGTD 504 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA---GRKGAVTIATNMAGRGTD 504 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc---CCCCcEEEeccCCCCCcC
Confidence 68999999999999999999999999999999887 3333344455442 332223335566676633
No 152
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.23 E-value=0.001 Score=78.33 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=82.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCc-EEecCCCCCHHHHHHHHHHHhcC-CCceEEEeeccccccccCccccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~-~~rldGs~s~~~R~~~v~~F~~d-~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
+|+-|+-||.-. +-.+...++++|.. ...+.|+.+++.|.+-...||+. +++.||++| +|.|-||||. -.||||
T Consensus 357 ~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEE
Confidence 788999998643 33456666777666 89999999999999999999985 578899877 9999999995 578888
Q ss_pred ecCC-C--------CcChhhHHhhhhcccCCCCc-EEEEEEEeC
Q 001094 1081 LDLW-W--------NPTTEDQAIDRAHRIGQTRP-VSVLRLTVK 1114 (1159)
Q Consensus 1081 lD~~-W--------NP~~e~QAigR~hRiGQtk~-V~V~rLv~~ 1114 (1159)
+++- + .-....|--|||+|.|.+-+ =.|.-|-.+
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 8865 2 22344599999999987654 444444433
No 153
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00017 Score=88.23 Aligned_cols=50 Identities=36% Similarity=0.931 Sum_probs=43.8
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccch
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~v 891 (1159)
-.|+.|++-+-+.+++.|||+||.+|+...+....-+||. |...|+...+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~--Cn~aFganDv 693 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPK--CNAAFGANDV 693 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCC--CCCCCCcccc
Confidence 3599999999999999999999999999999999999998 6666665443
No 154
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.03 E-value=0.0095 Score=76.50 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=30.8
Q ss_pred EEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCC
Q 001094 635 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 672 (1159)
Q Consensus 635 rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiq 672 (1159)
.||+||+|++.. ..+.+.++..|+..+.+..|||--.
T Consensus 204 ivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCC
Confidence 699999999965 2456788999999999999999644
No 155
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.01 E-value=0.043 Score=68.90 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=57.9
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC-CCCcChhhHHhhhhcccCCC
Q 001094 1034 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL-WWNPTTEDQAIDRAHRIGQT 1103 (1159)
Q Consensus 1034 ldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~-~WNP~~e~QAigR~hRiGQt 1103 (1159)
-+.+++...|..+=--|+. +...|++ +|...+.|+|+.+-..|+..|. ..||-...|+-|||+|-|=-
T Consensus 968 HHaglNr~yR~~VEvLFR~-g~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD 1036 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQ-GHLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFD 1036 (1330)
T ss_pred cccccchHHHHHHHHHhhc-CceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccc
Confidence 4577888899888888887 8888888 6699999999998888887764 57999999999999999843
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.00 E-value=0.0034 Score=82.32 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=37.7
Q ss_pred HHHHHHHHH-hcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccC
Q 001094 1042 ARDKAVKDF-NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1101 (1159)
Q Consensus 1042 ~R~~~v~~F-~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiG 1101 (1159)
.+.....+| ..+..+++||+. ...=+|.+-...+++++ |-+-=.....||+.|+.|+=
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~ 637 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVF 637 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCC
Confidence 334444454 444567777766 66667777776665544 55566777788888888873
No 157
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.92 E-value=0.00055 Score=53.81 Aligned_cols=38 Identities=42% Similarity=1.010 Sum_probs=33.6
Q ss_pred ccCCCCCCccch-hcccCccchhhhHHhhhh-cCCCCCCC
Q 001094 842 CGICNDPPEDAV-VSICGHVFCNQCICERLT-ADDNQCPT 879 (1159)
Q Consensus 842 C~iC~~~~~~~~-i~~CgH~~C~~Ci~~~l~-~~~~~Cp~ 879 (1159)
|+||.++.++++ +..|||.||..|+..++. .....||.
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPL 40 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCc
Confidence 789999999998 999999999999999998 55667774
No 158
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.81 E-value=0.00093 Score=55.08 Aligned_cols=44 Identities=36% Similarity=0.961 Sum_probs=37.6
Q ss_pred ccccCCCCCCccchhcccCcc-chhhhHHhhhhcCCCCCCCccccccc
Q 001094 840 AICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRL 886 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~ 886 (1159)
..|.+|.+.+.+.++.+|||. ||..|+..++. ....||. |+..+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~--Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPI--CRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTT--TTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCc--CChhh
Confidence 469999999999999999999 99999999988 7778997 77654
No 159
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.67 E-value=0.0018 Score=70.76 Aligned_cols=46 Identities=35% Similarity=0.790 Sum_probs=36.7
Q ss_pred cccccCCCCCCcc--------chhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPED--------AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~--------~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|+||.+...+ ++++.|+|.||.+||.+|+. ....||. |+..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPl--CR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPV--CRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCC--CCCEee
Confidence 4689999987543 36778999999999999876 4678998 887554
No 160
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.64 E-value=0.00076 Score=53.61 Aligned_cols=36 Identities=36% Similarity=0.923 Sum_probs=21.4
Q ss_pred ccCCCCCCcc----chhcccCccchhhhHHhhhhcC---CCCCC
Q 001094 842 CGICNDPPED----AVVSICGHVFCNQCICERLTAD---DNQCP 878 (1159)
Q Consensus 842 C~iC~~~~~~----~~i~~CgH~~C~~Ci~~~l~~~---~~~Cp 878 (1159)
|+||.+ ..+ |++.+|||+||.+|+..++... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 788888 655 7888899999999999988753 34555
No 161
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.61 E-value=0.0012 Score=77.10 Aligned_cols=48 Identities=33% Similarity=0.722 Sum_probs=40.8
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+...+|++++|||.||..|+..++... ..||. |+..+...
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~--Cr~~~~~~ 73 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPL--CRAEDQES 73 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCC--CCCccccc
Confidence 35899999999999999999999999999998763 47886 88766543
No 162
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0011 Score=77.80 Aligned_cols=51 Identities=33% Similarity=0.847 Sum_probs=41.4
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcC--C--CCCCCccccccccccch
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD--D--NQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~--~--~~Cp~~~c~~~~~~~~v 891 (1159)
...|+||..+++-|+.|.|||+||..||..+|... . ..||. |+..+....+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPi--C~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPI--CRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCc--hhhhccccce
Confidence 45799999999999999999999999999998754 2 24554 8877766544
No 163
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=96.60 E-value=0.035 Score=67.84 Aligned_cols=82 Identities=24% Similarity=0.265 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEe----c----CCCCcChhhHHhhhhcccCCCCcE
Q 001094 1035 DGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL----D----LWWNPTTEDQAIDRAHRIGQTRPV 1106 (1159)
Q Consensus 1035 dGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~l----D----~~WNP~~e~QAigR~hRiGQtk~V 1106 (1159)
+++.=+--++-+=--|++ +=++||. .|...+-|||+.+-..|+-- | -|-.-...+|--|||+|-|--..=
T Consensus 453 HsGLLPIlKE~IEILFqE-GLvKvLF-ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrG 530 (1041)
T KOG0948|consen 453 HSGLLPILKEVIEILFQE-GLVKVLF-ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRG 530 (1041)
T ss_pred cccchHHHHHHHHHHHhc-cHHHHHH-hhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCc
Confidence 344333334434345766 6677877 45999999999976655542 2 233667788999999999965443
Q ss_pred EEEEEEeCCCHHH
Q 001094 1107 SVLRLTVKNTVED 1119 (1159)
Q Consensus 1107 ~V~rLv~~~TIEe 1119 (1159)
.|. +++...+|.
T Consensus 531 ivI-lmiDekm~~ 542 (1041)
T KOG0948|consen 531 IVI-LMIDEKMEP 542 (1041)
T ss_pred eEE-EEecCcCCH
Confidence 333 444444443
No 164
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.60 E-value=0.0047 Score=70.83 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=90.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
+...|||..-..-++++...|+..|+...-+.|++....|..-+.+|.. ....+++ +++.++.|++..--+.||.||.
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~~~lv-vTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKTSILV-VTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-CccceEE-EehhhhccCCCccccccccccC
Confidence 4678999999999999999999999999999999999999999999998 5555555 5699999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk 1104 (1159)
+=.+.....|+||+.|-|.+-
T Consensus 339 p~~~klFvhRVgr~aragrtg 359 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTG 359 (529)
T ss_pred CCCCceEEEEecchhhccccc
Confidence 999999999999999999653
No 165
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.40 E-value=0.0071 Score=69.28 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=92.3
Q ss_pred ceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC
Q 001094 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084 (1159)
Q Consensus 1005 ~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~ 1084 (1159)
.--|||+.-+...+.+.-.|...||+..-|+.+....+|..+.++|-+ +++.|+.. |-+.|-|++=.....||+.+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~PvI~A-T~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPVIAA-TVSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCEEEE-EeccccccCCcceeEEEecCch
Confidence 356899999999999999999999999999999999999999999998 67777764 5889999999999999999999
Q ss_pred CCcChhhHHhhhhcccCCCCcEEEE
Q 001094 1085 WNPTTEDQAIDRAHRIGQTRPVSVL 1109 (1159)
Q Consensus 1085 WNP~~e~QAigR~hRiGQtk~V~V~ 1109 (1159)
-|-+-.-|--||++|-|-..=...|
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhhHHHHHhccccccCCCccceeee
Confidence 9999999999999999976545544
No 166
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.40 E-value=0.0024 Score=48.60 Aligned_cols=38 Identities=45% Similarity=1.020 Sum_probs=32.9
Q ss_pred ccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCC
Q 001094 842 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 842 C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
|++|.+....+++.+|||.||..|+..++......||.
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence 78999998888999999999999999998855667774
No 167
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.02 Score=73.83 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=97.4
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccc
Q 001094 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQV 467 (1159)
Q Consensus 388 ~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 467 (1159)
.+.++|-++|++|+.-+.+ ..+.++|--+|.|||+.+-..|..-.
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler-------~esVlV~ApTssGKTvVaeyAi~~al---------------------------- 159 (1041)
T COG4581 115 EYPFELDPFQQEAIAILER-------GESVLVCAPTSSGKTVVAEYAIALAL---------------------------- 159 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhC-------CCcEEEEccCCCCcchHHHHHHHHHH----------------------------
Confidence 3567899999999988763 24579999999999999865554310
Q ss_pred ccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh
Q 001094 468 NGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP 546 (1159)
Q Consensus 468 ~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~ 546 (1159)
+....+.-..|-. |-.|=-+++...+..- .--+-++.|...
T Consensus 160 ---------------------------------~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~---- 201 (1041)
T COG4581 160 ---------------------------------RDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVS---- 201 (1041)
T ss_pred ---------------------------------HcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceeccee----
Confidence 0111266777876 6677778887766421 122355666433
Q ss_pred hhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccC
Q 001094 547 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 626 (1159)
Q Consensus 547 ~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~ 626 (1159)
-.....+++.|-++|++-+. ... .
T Consensus 202 -IN~~A~clvMTTEILRnMly----------------rg~---------------------------------------~ 225 (1041)
T COG4581 202 -INPDAPCLVMTTEILRNMLY----------------RGS---------------------------------------E 225 (1041)
T ss_pred -eCCCCceEEeeHHHHHHHhc----------------cCc---------------------------------------c
Confidence 23467788888899976431 111 1
Q ss_pred CCcccceeEEEEccCcccCCch-hHHHHHHH-hc-ccCcEEEEecc
Q 001094 627 PLAKVGWFRVVLDEAQSIKNHR-TQVARACW-GL-RAKRRWCLSGT 669 (1159)
Q Consensus 627 ~L~~i~w~rVIlDEAH~IKN~~-S~~~ral~-~L-~a~~RwlLTGT 669 (1159)
.+..+. .||+||.|+|.... .-.+.-+. .+ +.-+-++||||
T Consensus 226 ~~~~i~--~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSAT 269 (1041)
T COG4581 226 SLRDIE--WVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSAT 269 (1041)
T ss_pred cccccc--eEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCC
Confidence 144444 49999999997753 34444433 33 44478999999
No 168
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0019 Score=69.84 Aligned_cols=49 Identities=29% Similarity=0.720 Sum_probs=39.9
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCC-CCCCCccccccccccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADD-NQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~-~~Cp~~~c~~~~~~~~ 890 (1159)
..|.+|.+.++.|.-++|||+||..|+...++... ..||. |+.......
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cpl--CRak~~pk~ 265 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPL--CRAKVYPKK 265 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHHHHhhccccCch--hhhhccchh
Confidence 56999999999999999999999999999555544 55997 776554443
No 169
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.21 E-value=0.002 Score=51.56 Aligned_cols=38 Identities=45% Similarity=0.846 Sum_probs=30.6
Q ss_pred cccCCCCCCc---cchhcccCccchhhhHHhhhhcCCCCCCC
Q 001094 841 ICGICNDPPE---DAVVSICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 841 ~C~iC~~~~~---~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
.|+||.+... ..+..+|||.||..|+.+|+... ..||.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCc
Confidence 5999998753 45677899999999999999874 68886
No 170
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.18 E-value=0.041 Score=72.13 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=72.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh----CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcccc--C
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA--C 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~----~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A--~ 1076 (1159)
.+.++|||.....+++.+...|.. .+++... .... ..|.+++++|+. ++..|||. +....+|+++..- .
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~-~~~~iLlg-t~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNN-GEKAILLG-TSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHh-CCCeEEEE-cceeecccccCCCceE
Confidence 456899999999999999999875 3444332 2222 579999999998 55567764 5999999999844 4
Q ss_pred EEEEecCCC-CcC-----------------------------hhhHHhhhhcccCCCCcEEE
Q 001094 1077 HVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1077 ~VI~lD~~W-NP~-----------------------------~e~QAigR~hRiGQtk~V~V 1108 (1159)
.||+.-+|+ +|. ...||+||+.|-.+-+.|.+
T Consensus 748 ~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 748 CLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 567776565 332 13399999999877776533
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.17 E-value=0.078 Score=57.48 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCcc-ceeecCCCCchhHHHHHHHHh
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~G-GILADemGLGKTlqaIAlI~~ 437 (1159)
.|-+.|+.|+.-++.. .+ .++.--.|.|||-+..+++..
T Consensus 1 ~ln~~Q~~Ai~~~~~~-------~~~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 1 KLNESQREAIQSALSS-------NGITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp ---HHHHHHHHHHCTS-------SE-EEEE-STTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-------CCCEEEECCCCCChHHHHHHHHHH
Confidence 3678999999877742 33 677778899999777666654
No 172
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.13 E-value=0.0038 Score=49.25 Aligned_cols=42 Identities=40% Similarity=0.963 Sum_probs=33.5
Q ss_pred cccCCCCCCccch-hcccCccchhhhHHhhhhcCCCCCCCccccc
Q 001094 841 ICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPTRNCKI 884 (1159)
Q Consensus 841 ~C~iC~~~~~~~~-i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~ 884 (1159)
.|++|.+....++ +..|||.||..|+..++......||. |+.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~--C~~ 43 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL--CRT 43 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCC--CCC
Confidence 4899998885555 44599999999999999876778886 554
No 173
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.07 E-value=0.0044 Score=49.64 Aligned_cols=37 Identities=30% Similarity=0.891 Sum_probs=30.7
Q ss_pred ccCCCCCC---ccchhcccCccchhhhHHhhhhcCCCCCCC
Q 001094 842 CGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 842 C~iC~~~~---~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
|++|.... ..++++.|||+||..|+.... .....||.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 78888766 347899999999999999888 66678886
No 174
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.03 E-value=0.0035 Score=56.09 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=37.6
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+.+.+|++++|||+|+..||..++......||. |+..+..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~--t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF--TRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT--T-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC--CCCcCCc
Confidence 46799999999999999999999999999999988889997 4444443
No 175
>PHA02926 zinc finger-like protein; Provisional
Probab=96.00 E-value=0.0043 Score=65.58 Aligned_cols=48 Identities=29% Similarity=0.746 Sum_probs=36.8
Q ss_pred ccccccCCCCCCc---------cchhcccCccchhhhHHhhhhcC-----CCCCCCcccccccc
Q 001094 838 SLAICGICNDPPE---------DAVVSICGHVFCNQCICERLTAD-----DNQCPTRNCKIRLS 887 (1159)
Q Consensus 838 ~~~~C~iC~~~~~---------~~~i~~CgH~~C~~Ci~~~l~~~-----~~~Cp~~~c~~~~~ 887 (1159)
....|+||++..- ..++..|+|.||..||..|.... ...||. ||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi--CR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPI--CRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCC--Ccceee
Confidence 3478999997631 25788999999999999998753 346997 887554
No 176
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.88 E-value=0.069 Score=66.75 Aligned_cols=81 Identities=10% Similarity=0.130 Sum_probs=54.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC-CCcEEecCCCCCHHHHHHHHHHHhcC---CCceEEEeeccccccccCc------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNM------ 1072 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~-gi~~~rldGs~s~~~R~~~v~~F~~d---~~~~VLLlStkagg~GLNL------ 1072 (1159)
.|.-.+.|+.|..|- .+...|... .++ +.+.|..+ .|..++++|... +.-.||+ .+.+..+|+++
T Consensus 470 ~G~~lvLfTS~~~~~-~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~-gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAFSHIS-AIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLI-AAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechHHHHH-HHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEE-eCCccccccccCCccCC
Confidence 566667777766654 455555442 233 44566532 568899999985 3345655 66999999999
Q ss_pred ----cccCEEEEecCCCCcC
Q 001094 1073 ----VAACHVLLLDLWWNPT 1088 (1159)
Q Consensus 1073 ----~~A~~VI~lD~~WNP~ 1088 (1159)
...+.|||.-+|+-|.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCcccEEEEEeCCCCcC
Confidence 3678899988888764
No 177
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.70 E-value=0.099 Score=59.67 Aligned_cols=42 Identities=26% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHH
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
+.+|.|+.-..-+......+ .-+|+--..|.|||+..|..++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 34899999666665544432 3367888999999999876654
No 178
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.70 E-value=0.099 Score=59.67 Aligned_cols=42 Identities=26% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHH
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
+.+|.|+.-..-+......+ .-+|+--..|.|||+..|..++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 34899999666665544432 3367888999999999876654
No 179
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.70 E-value=0.0076 Score=67.76 Aligned_cols=49 Identities=24% Similarity=0.699 Sum_probs=37.6
Q ss_pred ccccCCCCC--C-c--cchhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 840 AICGICNDP--P-E--DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 840 ~~C~iC~~~--~-~--~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
..|++|... . . ...+..|||.||..|+...+......||. |+..+....
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~--C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPE--CDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCC--CCCccchhh
Confidence 469999863 1 1 22556899999999999998887788984 988777654
No 180
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.56 E-value=1.2 Score=56.86 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc-ccC-----
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV-AAC----- 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~-~A~----- 1076 (1159)
.|..|||-+-....-+.+...|.+.||+...++-.-. .|++-+-++.-. ...|-| +|..+|.|-++. ..+
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~-~gaVTi-ATNMAGRGTDIkLg~~~~~V~ 503 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQ-PGAVTI-ATNMAGRGTDIKLGGNPEFVM 503 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCC-CCcccc-ccccccCCcccccCCCHHHHH
Confidence 7899999999999999999999999999988887754 566655555432 223444 778899998887 333
Q ss_pred -----EEEEecCCCCcChhhHHhhhhcccC
Q 001094 1077 -----HVLLLDLWWNPTTEDQAIDRAHRIG 1101 (1159)
Q Consensus 1077 -----~VI~lD~~WNP~~e~QAigR~hRiG 1101 (1159)
+||=-+-.=+-....|--||++|.|
T Consensus 504 ~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 504 ELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred HhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 5666666666666779999999999
No 181
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.28 E-value=0.0086 Score=50.77 Aligned_cols=45 Identities=33% Similarity=0.668 Sum_probs=32.0
Q ss_pred cccccCCCCCCccchhc-ccCccchhhhHHhhhh-cCCCCCCCcccc
Q 001094 839 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLT-ADDNQCPTRNCK 883 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~-~~~~~Cp~~~c~ 883 (1159)
...|+|...+.++|+.+ .|+|+|..+.|.+++. .....||...|.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 36799999999999986 7999999999999993 345689998873
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.19 E-value=0.056 Score=65.35 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=59.6
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
+|-..|..||...+++-. .|+--..|.|||++.-+++.+.
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyhl--------------------------------- 449 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYHL--------------------------------- 449 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHHH---------------------------------
Confidence 467799999999997643 4777789999999885555331
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhh-HHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRT 543 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sL-l~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~ 543 (1159)
..+..+++||++|..+ +.|-++-|++- .|+|+-.....|.
T Consensus 450 ---------------------------~~~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 450 ---------------------------ARQHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRE 490 (935)
T ss_pred ---------------------------HHhcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhh
Confidence 1123457999999985 89999999863 5888887766554
No 183
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.01 E-value=0.014 Score=49.86 Aligned_cols=45 Identities=33% Similarity=0.855 Sum_probs=23.6
Q ss_pred cccccCCCCCCccch-hcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~-i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
+-.|++|.+.+..|| ++.|.|+||..||...+.. .||+ |.++...
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPv--C~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPV--CHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SS--S--B-S-
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCC--cCChHHH
Confidence 346999999999997 6899999999999886653 4886 7665443
No 184
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.00 E-value=0.011 Score=64.20 Aligned_cols=43 Identities=33% Similarity=0.778 Sum_probs=36.7
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 885 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~ 885 (1159)
-.|-||.+-..-|++|+|||.||.-||..+|. ...-||. |+..
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~--Cr~~ 68 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPV--CRED 68 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCcc--cccc
Confidence 46999999999999999999999999999985 4567876 6654
No 185
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=94.96 E-value=0.007 Score=67.01 Aligned_cols=47 Identities=36% Similarity=0.791 Sum_probs=39.6
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
-.|.||.+-..-|++++|+|.||.-||..+|. ....||. |...+...
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~--C~~~~~Es 70 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPT--CCVTVTES 70 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCc--eecccchh
Confidence 45999999999999999999999999999985 4578987 77665543
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.95 E-value=0.13 Score=55.33 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=22.6
Q ss_pred cceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChH
Q 001094 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAID 676 (1159)
Q Consensus 631 i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~ 676 (1159)
+.+..||+||||++.. ...-..+.++....++.++|=|.|....
T Consensus 118 ~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 3457899999998742 3444455677888999999999887644
No 187
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.95 E-value=0.2 Score=52.39 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=63.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC----CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecc--ccccccCcc--c
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS----SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK--AASLGLNMV--A 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~----gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStk--agg~GLNL~--~ 1074 (1159)
.+.++|||...-.+++.+...++.. ++....- + ...+.+++++|..+. -.||+ ++. ..++|+|+. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~-~~il~-~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGE-GAILL-AVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSS-SEEEE-EETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhcc-CeEEE-EEecccEEEeecCCCch
Confidence 5689999999999999999999875 3443332 2 358899999999943 33444 445 789999998 4
Q ss_pred cCEEEEecCCC-CcCh-----------------------------hhHHhhhhcccCCCCcEE
Q 001094 1075 ACHVLLLDLWW-NPTT-----------------------------EDQAIDRAHRIGQTRPVS 1107 (1159)
Q Consensus 1075 A~~VI~lD~~W-NP~~-----------------------------e~QAigR~hRiGQtk~V~ 1107 (1159)
+..||+.-+|+ +|.. ..||+||+.|-.+-+.+.
T Consensus 82 ~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 82 LRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp EEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred hheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 67788888886 3421 128899999966544433
No 188
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.025 Score=46.33 Aligned_cols=45 Identities=33% Similarity=0.743 Sum_probs=40.2
Q ss_pred cccccCCCCCCccchhcccCc-cchhhhHHhhhhcCCCCCCCcccccc
Q 001094 839 LAICGICNDPPEDAVVSICGH-VFCNQCICERLTADDNQCPTRNCKIR 885 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH-~~C~~Ci~~~l~~~~~~Cp~~~c~~~ 885 (1159)
..+|-||.+.|.+.|+-.||| -.|.+|-.+.+++....||. |+..
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPi--CRap 52 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPI--CRAP 52 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcc--hhhH
Confidence 378999999999999999999 58999999999998899997 6654
No 189
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.65 E-value=0.2 Score=62.72 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=30.0
Q ss_pred EEEEccCcccCCchhHHHHHHHhcccCcEEEEeccC
Q 001094 635 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 670 (1159)
Q Consensus 635 rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTP 670 (1159)
.||+||-|++... .+.+.++..+++-..+=.+||-
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 6999999999876 7899999999888777777773
No 190
>PRK10536 hypothetical protein; Provisional
Probab=93.62 E-value=0.29 Score=54.44 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=32.3
Q ss_pred eEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCCh
Q 001094 634 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 675 (1159)
Q Consensus 634 ~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l 675 (1159)
.+|||||||++.- ......+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 5899999999853 555566678889999999999987653
No 191
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.016 Score=65.09 Aligned_cols=48 Identities=35% Similarity=0.805 Sum_probs=40.1
Q ss_pred cccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+.......+ -|+|.||.+||...+....+.||. |++.+..
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecpt--cRk~l~S 91 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPT--CRKKLVS 91 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCch--HHhhccc
Confidence 36799999887776655 599999999999999999999998 8876543
No 192
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.23 E-value=0.47 Score=62.32 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI 435 (1159)
...+|+|...+..+.+..... +-+++--.+|.|||+..|.-+
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~ 285 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPA 285 (850)
T ss_pred CccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHH
Confidence 457899998777666544322 234555699999998775443
No 193
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.079 Score=58.60 Aligned_cols=55 Identities=25% Similarity=0.535 Sum_probs=46.9
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhh
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKA 895 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~ 895 (1159)
..+|.||...+.-|+...|+|.||.-||.-....+-..|+. |+..+...-+|.+.
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Cav--CR~pids~i~~~ps 61 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAV--CRFPIDSTIDFEPS 61 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCce--ecCCCCcchhcchh
Confidence 46899999999999999999999999999988888888987 99888766555443
No 194
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.10 E-value=0.67 Score=59.19 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=75.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCc-EEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc--ccCEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVL 1079 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~-~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--~A~~VI 1079 (1159)
.+.++|||...-.++..+...|...... .+...|.. .+.++++.|...++. .+++.+...++|+|+. ....||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 4558999999889999999999876653 45555654 455999999986654 5555679999999998 457888
Q ss_pred EecCCCC-cC-----------------------------hhhHHhhhhcccCCCCcEEE
Q 001094 1080 LLDLWWN-PT-----------------------------TEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1080 ~lD~~WN-P~-----------------------------~e~QAigR~hRiGQtk~V~V 1108 (1159)
+.-.||= |. ...||+||+.|--+-+.|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8887773 33 22399999999555555544
No 195
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=91.34 E-value=63 Score=42.94 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=38.2
Q ss_pred HHHHHHHhcC---CCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCc
Q 001094 1044 DKAVKDFNTL---PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1044 ~~~v~~F~~d---~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
...|+++-.. .+..+++++|...-+|+++-. +.+| .|+. .-....|+.||+.|-|+...
T Consensus 823 ~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~df-d~~~-~~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 823 DDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDY-DWAI-ADPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred hHHHHHHHhcccccCCCeEEEEeeeEEEEecccC-Ceee-eccC-cHHHHHHHhhcccccccCCC
Confidence 3444444433 235567778999999999863 3333 3332 23467899999999998653
No 196
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.28 E-value=1 Score=59.71 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=70.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCC--cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc--cCEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHV 1078 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi--~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~--A~~V 1078 (1159)
.+.++|||.....++..+...|..... .+..+.-+++...|.+++++|+. .+-.||+. +.+..+|+++.+ ...|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~iLlG-~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKAILLG-TSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCeEEEe-cCcccCccccCCCceEEE
Confidence 345777777777888888888865322 12222222333468999999997 33456664 588899999984 4788
Q ss_pred EEecCCC-CcCh-----------------------------hhHHhhhhcccCCCCcEEE
Q 001094 1079 LLLDLWW-NPTT-----------------------------EDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1079 I~lD~~W-NP~~-----------------------------e~QAigR~hRiGQtk~V~V 1108 (1159)
|+.-+|+ +|.. ..|++||+.|-.+-+.|.|
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 8888776 4541 1389999999887776533
No 197
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=0.11 Score=57.10 Aligned_cols=45 Identities=29% Similarity=0.608 Sum_probs=38.4
Q ss_pred ccccCCCCCCcc---chhcccCccchhhhHHhhhhcCCCCCCCccccccc
Q 001094 840 AICGICNDPPED---AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 886 (1159)
Q Consensus 840 ~~C~iC~~~~~~---~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~ 886 (1159)
.+|.||+..... -++++|.|.|=..|+..|+.+-.++||+ |++.+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPv--Crt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV--CRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCc--cCCCC
Confidence 689999976532 4689999999999999999999999998 87643
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.48 E-value=1.4 Score=44.86 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCC-------cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc--ccCEEEEecCCC-
Q 001094 1016 MLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLLLDLWW- 1085 (1159)
Q Consensus 1016 ~LdlLe~~L~~~gi-------~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--~A~~VI~lD~~W- 1085 (1159)
+++.+...+...++ ..+.+.| ....+...+++.|....+..||+ ++...++|+|+. .+..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~iL~-~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAILL-ATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEEEE-EccceecceecCCCCeeEEEEEecCCC
Confidence 34445555555443 3334444 33446899999999854334555 555699999998 456677777554
Q ss_pred CcC
Q 001094 1086 NPT 1088 (1159)
Q Consensus 1086 NP~ 1088 (1159)
||.
T Consensus 81 ~~~ 83 (141)
T smart00492 81 YPD 83 (141)
T ss_pred CCC
Confidence 444
No 199
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.23 E-value=0.093 Score=55.80 Aligned_cols=50 Identities=24% Similarity=0.639 Sum_probs=41.3
Q ss_pred ccccCCCC-----CCccchhcc-cCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 840 AICGICND-----PPEDAVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 840 ~~C~iC~~-----~~~~~~i~~-CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
.-||+|.. |....++.+ |.|..|..|+...++...-+||...|.+.+...
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 36999963 444456777 999999999999999999999999999876643
No 200
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=90.17 E-value=0.86 Score=51.22 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=62.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccc
Q 001094 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 469 (1159)
Q Consensus 390 ~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 469 (1159)
...+++-|..|+--|. .|-|.=-.+|=|||+++. +.+...
T Consensus 75 g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~~-l~a~~~------------------------------ 114 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIAA-LPAALN------------------------------ 114 (266)
T ss_dssp S----HHHHHHHHHHH---------TTSEEEESTTSHHHHHHH-HHHHHH------------------------------
T ss_pred CCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHHH-HHHHHH------------------------------
Confidence 3456777888886663 567888899999999884 433311
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 001094 470 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKD 545 (1159)
Q Consensus 470 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl----~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~ 545 (1159)
.. ..+++=||+.+..| .+|...+-+++ +++|-...+......
T Consensus 115 ---------------------------AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~~L----Glsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 115 ---------------------------AL---QGKGVHVVTSNDYLAKRDAEEMRPFYEFL----GLSVGIITSDMSSEE 160 (266)
T ss_dssp ---------------------------HT---TSS-EEEEESSHHHHHHHHHHHHHHHHHT----T--EEEEETTTEHHH
T ss_pred ---------------------------HH---hcCCcEEEeccHHHhhccHHHHHHHHHHh----hhccccCccccCHHH
Confidence 01 12346788888755 56888887776 488877776544322
Q ss_pred hhhcCCCCEEEechhhHhhc
Q 001094 546 PCELAKFDVVITTYSIVSME 565 (1159)
Q Consensus 546 ~~~l~~~DVVItTY~~l~~e 565 (1159)
....-..||+-+|-..|.-+
T Consensus 161 r~~~Y~~dI~Y~t~~~~~fD 180 (266)
T PF07517_consen 161 RREAYAADIVYGTNSEFGFD 180 (266)
T ss_dssp HHHHHHSSEEEEEHHHHHHH
T ss_pred HHHHHhCcccccccchhhHH
Confidence 33344678988887777653
No 201
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=0.12 Score=58.44 Aligned_cols=44 Identities=30% Similarity=0.766 Sum_probs=37.8
Q ss_pred hccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccc
Q 001094 837 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK 883 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~ 883 (1159)
.....|+||.+....|.+.+|||.||..|+...+. ....||. |+
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~--cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPV--CR 54 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcc--cC
Confidence 34578999999999998889999999999999888 5567876 77
No 202
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.19 Score=55.01 Aligned_cols=43 Identities=35% Similarity=0.812 Sum_probs=34.8
Q ss_pred hccccccCCCCCCccchh-cccCccchhhhHHhhhhcC-CCCCCC
Q 001094 837 ASLAICGICNDPPEDAVV-SICGHVFCNQCICERLTAD-DNQCPT 879 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~~i-~~CgH~~C~~Ci~~~l~~~-~~~Cp~ 879 (1159)
.+..+|++|.++|..|.+ .+|+|++|.-|+......+ ...||.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~ 281 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPL 281 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCc
Confidence 345789999999999865 5599999999999766543 578886
No 203
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=90.03 E-value=0.18 Score=57.22 Aligned_cols=51 Identities=27% Similarity=0.837 Sum_probs=42.1
Q ss_pred HhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcC-CCCCCCccccc
Q 001094 834 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTAD-DNQCPTRNCKI 884 (1159)
Q Consensus 834 ~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~-~~~Cp~~~c~~ 884 (1159)
.+.+....|-||.+...+--|.+|||++|..|+..|-..+ ...||...|.-
T Consensus 364 eMgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 364 EMGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 3455567899999999898999999999999999998766 67899855543
No 204
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=90.02 E-value=0.14 Score=53.08 Aligned_cols=34 Identities=38% Similarity=0.893 Sum_probs=29.8
Q ss_pred ccccccCCCCCCccchhcccCccchhhhHHhhhh
Q 001094 838 SLAICGICNDPPEDAVVSICGHVFCNQCICERLT 871 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~ 871 (1159)
-.+.|.||-..-+.||++.|||.||..|......
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~ 228 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ 228 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhc
Confidence 3468999999999999999999999999876554
No 205
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=89.93 E-value=3.9 Score=51.95 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
..|-+.|+.||.+.+... .-.++--..|.|||-++++++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~------~~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK------DLFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCC------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999887421 12466677999999888888754
No 206
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.61 E-value=0.77 Score=58.21 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=41.1
Q ss_pred cEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh------hhcCCCCEEEechhhHh
Q 001094 505 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP------CELAKFDVVITTYSIVS 563 (1159)
Q Consensus 505 ~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~------~~l~~~DVVItTY~~l~ 563 (1159)
.+||++|.. +..|+..-+++.|+ .-.|.+||........ ...++.+|||=|.+.+-
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 489999996 88999999999885 3568889986543321 12356788988876663
No 207
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=89.47 E-value=0.43 Score=56.59 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCcc-ceeecCCCCchhHHHHHHHHhcC
Q 001094 393 LLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILKER 439 (1159)
Q Consensus 393 L~phQ~~gv~wMl~~e~~~~~~~G-GILADemGLGKTlqaIAlI~~~r 439 (1159)
.||-| +.+|.+.-++- ..+| |+|--.-|.|||++.|+||.+.+
T Consensus 17 iYPEQ---~~YM~elKrsL-DakGh~llEMPSGTGKTvsLLSli~aYq 60 (755)
T KOG1131|consen 17 IYPEQ---YEYMRELKRSL-DAKGHCLLEMPSGTGKTVSLLSLIIAYQ 60 (755)
T ss_pred cCHHH---HHHHHHHHHhh-ccCCcEEEECCCCCCcchHHHHHHHHHH
Confidence 57777 46777654433 3344 89999999999999999987653
No 208
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.32 E-value=3 Score=54.46 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=68.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc--ccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--~A~~VI~ 1080 (1159)
.+.+++|+....+++..+...|....++. ...|... .|.+++++|+. ++-.||+.+ .+..+|+++. .+..||+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~-~~~~vLlG~-~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR-GEQQILLGL-GSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc-CCCeEEEec-chhhCCCCCCCCCeEEEEE
Confidence 45678887777888888888887655544 5555332 36779999997 444577654 8899999996 4566777
Q ss_pred ecCC-CCcCh-----------------------------hhHHhhhhcccCCCCcEE
Q 001094 1081 LDLW-WNPTT-----------------------------EDQAIDRAHRIGQTRPVS 1107 (1159)
Q Consensus 1081 lD~~-WNP~~-----------------------------e~QAigR~hRiGQtk~V~ 1107 (1159)
.-+| .+|.. ..|++||+.|--.-+.|.
T Consensus 721 ~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv 777 (820)
T PRK07246 721 TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV 777 (820)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE
Confidence 6644 34522 128999999966656553
No 209
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=89.00 E-value=0.66 Score=55.54 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=43.4
Q ss_pred EEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhc--CCCCEEEechhhHhh
Q 001094 506 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--AKFDVVITTYSIVSM 564 (1159)
Q Consensus 506 tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l--~~~DVVItTY~~l~~ 564 (1159)
.|||+|+- |..|-...|..... ...+++..+.|.-......++ ...||||.|-+.|-.
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlwe 326 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWE 326 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHH
Confidence 69999998 77888888876654 447999999887654433332 367999999988853
No 210
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.90 E-value=2.7 Score=53.97 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=52.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhh-CCCcEEecCCCCCHHHHHHHHHHHhcC---CCceEEEeeccccccccCcc--ccCEEE
Q 001094 1006 KAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNMV--AACHVL 1079 (1159)
Q Consensus 1006 KvIIFSq~t~~LdlLe~~L~~-~gi~~~rldGs~s~~~R~~~v~~F~~d---~~~~VLLlStkagg~GLNL~--~A~~VI 1079 (1159)
+++||.....+++.+...|.. .+.+ +...|. ..|.++++.|.+. ++..||+. +.+..+|+++. ....||
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g-~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFG-LQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEE-eccccccccCCCCceEEEE
Confidence 467777777777788888864 2333 344564 3578899888752 34456665 48889999997 468888
Q ss_pred EecCCC
Q 001094 1080 LLDLWW 1085 (1159)
Q Consensus 1080 ~lD~~W 1085 (1159)
+.-+|+
T Consensus 611 I~kLPF 616 (697)
T PRK11747 611 ITKIPF 616 (697)
T ss_pred EEcCCC
Confidence 887776
No 211
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.77 E-value=2.4 Score=54.68 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=68.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCC-------cEEecCCCCCHHHHHHHHHHHhcC---CCceEEEeec-cccccccC
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSL-KAASLGLN 1071 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi-------~~~rldGs~s~~~R~~~v~~F~~d---~~~~VLLlSt-kagg~GLN 1071 (1159)
.+..+|||...-..|+.+...+...|+ ..+.+.+.- ..++++++++|... +...||+... ...++|+|
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 356788888888888877777765432 223333432 26889999999753 3334666432 46789999
Q ss_pred cc--ccCEEEEecCCC-CcCh------------------------------hhHHhhhhcccCCCCcE
Q 001094 1072 MV--AACHVLLLDLWW-NPTT------------------------------EDQAIDRAHRIGQTRPV 1106 (1159)
Q Consensus 1072 L~--~A~~VI~lD~~W-NP~~------------------------------e~QAigR~hRiGQtk~V 1106 (1159)
+. .+..||++-+|+ ||.. ..||+||+.|--+-+.+
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ 667 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGS 667 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEE
Confidence 98 478888888887 5531 23999999996554444
No 212
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.74 E-value=0.23 Score=54.43 Aligned_cols=43 Identities=33% Similarity=0.865 Sum_probs=37.6
Q ss_pred ccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCccccc
Q 001094 840 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKI 884 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~ 884 (1159)
-.|+.|....-.|+-+ .|+|.||.+||...|...+..||. |..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cpn--C~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPN--CSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCC--ccc
Confidence 3599999988888888 689999999999999999999996 544
No 213
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.29 E-value=2.7 Score=53.34 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=49.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC-------CCcEEecCCCCCHHHHHHHHHHHhcC---CC---ceEEEeeccccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNTL---PE---VSVMIMSLKAASLG 1069 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~-------gi~~~rldGs~s~~~R~~~v~~F~~d---~~---~~VLLlStkagg~G 1069 (1159)
-.+.+|||-..-.++|-+..+.... +..-+.+- --+..+-.+++.+|.+. ++ .-.|-+.-...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 3455899988888888885555432 22222221 11334455666666541 21 21222334567899
Q ss_pred cCcc--ccCEEEEecCCCCcC
Q 001094 1070 LNMV--AACHVLLLDLWWNPT 1088 (1159)
Q Consensus 1070 LNL~--~A~~VI~lD~~WNP~ 1088 (1159)
|++. .+.-||+.-+++=|.
T Consensus 639 lDFsD~~~RaVI~tGlPyP~~ 659 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPYPPV 659 (945)
T ss_pred CCccccCCceeEEecCCCCCC
Confidence 9997 667788888776554
No 214
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.19 E-value=4.2 Score=54.07 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 432 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaI 432 (1159)
..-||-|..-+..+.+..... .-.++=-.+|.|||+--|
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYL 294 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYL 294 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHH
Confidence 457899998666666544422 113444589999998664
No 215
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=87.89 E-value=0.34 Score=43.34 Aligned_cols=39 Identities=41% Similarity=0.963 Sum_probs=29.0
Q ss_pred ccccCCCCCCccc-------------hhcccCccchhhhHHhhhhcCCCCCCC
Q 001094 840 AICGICNDPPEDA-------------VVSICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 840 ~~C~iC~~~~~~~-------------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
..|.||.++..++ ....|||.|-..||..++.... .||.
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 4599998766221 3457999999999999996555 8886
No 216
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=87.41 E-value=2.8 Score=51.27 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=32.4
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 387 ~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
..+...|-+-|+.|+.+....- .+ -++=-.+|.|||.+..-+|..
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k--~l----~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNK--DL----LIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred ccCCccccHHHHHHHHHHhccC--Cc----eEeeCCCCCCceeeHHHHHHH
Confidence 3455668899999999888642 11 245557899999988777744
No 217
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=87.19 E-value=3.4 Score=52.09 Aligned_cols=42 Identities=26% Similarity=0.162 Sum_probs=34.1
Q ss_pred cceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCC
Q 001094 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 674 (1159)
Q Consensus 631 i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~ 674 (1159)
..+++||||||-.+- ....++.+..+....|++|-|=|-|-.
T Consensus 264 l~~dvlIvDEaSMvd--~~lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 264 LHLDVLVVDEASMVD--LPMMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred CCCCeEEEChHhccc--HHHHHHHHHhcccCCEEEEecchhhcC
Confidence 457899999999984 456667778888999999999987743
No 218
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.15 E-value=1.4 Score=52.68 Aligned_cols=98 Identities=20% Similarity=0.180 Sum_probs=77.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh----CCC----cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD----SSI----QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~----~gi----~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~ 1074 (1159)
.+-++|-|+..+.+-+++-...++ -+- .+..|.|+-..++|.++-.+.-. ++..- +++|.|..+|+++-.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~g-iIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLCG-IIATNALELGIDIGH 601 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-CeeeE-EEecchhhhcccccc
Confidence 678999999999887766544332 111 23468899999999998877655 45444 447899999999999
Q ss_pred cCEEEEecCCCCcChhhHHhhhhcccCC
Q 001094 1075 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ 1102 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~e~QAigR~hRiGQ 1102 (1159)
-+-|+++..+..-+...|-.||++|-..
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCC
Confidence 9999999999999999999999999653
No 219
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.75 E-value=4.8 Score=46.23 Aligned_cols=57 Identities=26% Similarity=0.265 Sum_probs=39.9
Q ss_pred EEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-Chhhc-CCCCEEEechhhHh
Q 001094 506 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL-AKFDVVITTYSIVS 563 (1159)
Q Consensus 506 tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~l-~~~DVVItTY~~l~ 563 (1159)
.||+.|+. |-.|-.+.+.. ....-.+++.++.|....- ....| .+.+||++|-+.++
T Consensus 78 alvlTPTrELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRla 137 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLA 137 (442)
T ss_pred EEEecchHHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccc
Confidence 69999998 77888888764 4444578888888764332 22233 46789999988875
No 220
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=86.46 E-value=4.8 Score=43.19 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHH
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI 435 (1159)
+|-+-|+.++..++.... +-.+|.=..|.|||..+-+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~ 39 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALA 39 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHH
Confidence 367899999999985321 225676779999997654443
No 221
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=85.59 E-value=5.8 Score=51.95 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIA 433 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIA 433 (1159)
...|+-|..-...+.+..... .-.++--..|.|||+.-+.
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~---~~~~~eA~tGtGKT~ayll 283 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDG---PASFIEAQTGIGKTYGYLL 283 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCC---CcEEEECCCCCcHHHHHHH
Confidence 457889998666665544322 1134556899999986643
No 222
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=85.55 E-value=3 Score=42.37 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCC----cEEecCCCCCHHHHHHHHHHHhcCCC--ceEEEeeccc--cccccCcc--ccCEEEEecCCC
Q 001094 1016 MLDLLEASLKDSSI----QYRRLDGTMSVFARDKAVKDFNTLPE--VSVMIMSLKA--ASLGLNMV--AACHVLLLDLWW 1085 (1159)
Q Consensus 1016 ~LdlLe~~L~~~gi----~~~rldGs~s~~~R~~~v~~F~~d~~--~~VLLlStka--gg~GLNL~--~A~~VI~lD~~W 1085 (1159)
+++.+...++..++ ..+.+.+... .+..++++.|+...+ ..||+ ++.. .++|+||. .+..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDS-GETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCC-chHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 44555556655443 2234445432 355899999997432 24555 3343 79999998 456788877665
Q ss_pred -Cc
Q 001094 1086 -NP 1087 (1159)
Q Consensus 1086 -NP 1087 (1159)
+|
T Consensus 81 p~~ 83 (142)
T smart00491 81 PNP 83 (142)
T ss_pred CCC
Confidence 44
No 223
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=85.40 E-value=3.1 Score=48.94 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.0
Q ss_pred cceeEEEEccCcccCC
Q 001094 631 VGWFRVVLDEAQSIKN 646 (1159)
Q Consensus 631 i~w~rVIlDEAH~IKN 646 (1159)
-.+++||+||||++..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 4578999999999987
No 224
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=84.40 E-value=0.35 Score=54.52 Aligned_cols=45 Identities=36% Similarity=0.844 Sum_probs=37.7
Q ss_pred ccccCCCCCCccc-hhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 840 AICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 840 ~~C~iC~~~~~~~-~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
..|.+|..-..|+ -|+-|.|.||..||..++.. ...||. |...+.
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~--C~i~ih 61 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPT--CDIVIH 61 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCc--cceecc
Confidence 5799999888887 47889999999999999988 889998 555433
No 225
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=83.85 E-value=0.56 Score=55.77 Aligned_cols=46 Identities=37% Similarity=0.930 Sum_probs=39.2
Q ss_pred ccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 840 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
-.|++|..+..+|+.+ .|||.||..|+.+++.. ...||. |+..+..
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~--~~~~~~~ 68 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPV--CRQELTQ 68 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcc--cccccch
Confidence 4799999999999995 99999999999999988 788987 6554443
No 226
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=83.72 E-value=12 Score=45.18 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=93.4
Q ss_pred cCCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccc-cccCccccCEEEE
Q 001094 1002 LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS-LGLNMVAACHVLL 1080 (1159)
Q Consensus 1002 ~~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg-~GLNL~~A~~VI~ 1080 (1159)
....++|||...---.-.|..+|+..++.|+.+.--++..+-.++-..|.. +...+||.|-++-= .=..+-++.+||+
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEEEE
Confidence 456788888776665666889999999999999999999999999999998 78999999966522 2345678999999
Q ss_pred ecCCCCcChhhHHhhhhcccCC----CCcEEEEEEEeCC-CH-HHHHHHHHHHH
Q 001094 1081 LDLWWNPTTEDQAIDRAHRIGQ----TRPVSVLRLTVKN-TV-EDRILALQQKK 1128 (1159)
Q Consensus 1081 lD~~WNP~~e~QAigR~hRiGQ----tk~V~V~rLv~~~-TI-EerIl~lq~~K 1128 (1159)
|.||-+|.-....+.-+..-.+ ..+..|.-|+++= .+ =|||...+..+
T Consensus 377 Y~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~ 430 (442)
T PF06862_consen 377 YGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERAS 430 (442)
T ss_pred ECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHH
Confidence 9999999988877765554433 3446666666653 21 24555444333
No 227
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=83.64 E-value=9 Score=48.18 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=33.1
Q ss_pred cceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCC
Q 001094 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 674 (1159)
Q Consensus 631 i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~ 674 (1159)
..+++||||||-++-. ....+.+..+....|++|.|=|-|=.
T Consensus 258 l~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 258 LPLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred CcccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhhCC
Confidence 3578999999999853 45666677788889999999887643
No 228
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.35 E-value=0.72 Score=51.12 Aligned_cols=47 Identities=28% Similarity=0.790 Sum_probs=37.7
Q ss_pred cccCCC-----CCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 841 ICGICN-----DPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 841 ~C~iC~-----~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
.|+.|. .|.-...+..|+|..|..|+...+...+..|| .|.+.+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhc
Confidence 477885 33334567799999999999999999999999 698877654
No 229
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.64 E-value=0.64 Score=54.85 Aligned_cols=48 Identities=33% Similarity=0.763 Sum_probs=39.5
Q ss_pred ccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 838 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
+...|-+|......|+.++|||.||..|+...+. ....||. |+..+..
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~--Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPL--CRDELVE 130 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcc--ccccccc
Confidence 4578999999999999999999999999888554 5667886 7765553
No 230
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=82.17 E-value=10 Score=48.94 Aligned_cols=41 Identities=17% Similarity=0.082 Sum_probs=31.1
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCC
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 674 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~ 674 (1159)
..++||||||+.+-. ....+.+..+....|++|-|=|-|-.
T Consensus 416 ~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 416 DCDLLIVDESSMMDT--WLALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred cCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEECcccccc
Confidence 356899999999953 34455666777888999999887643
No 231
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.73 E-value=0.76 Score=51.71 Aligned_cols=34 Identities=35% Similarity=0.732 Sum_probs=31.3
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA 872 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~ 872 (1159)
...|+||.-.|..+++++|+|.-|..||..++.+
T Consensus 422 d~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN 455 (489)
T KOG4692|consen 422 DNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN 455 (489)
T ss_pred cccCcceecccchhhccCCCCchHHHHHHHHHhc
Confidence 3579999999999999999999999999999864
No 232
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=81.37 E-value=5.2 Score=51.02 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc--ccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--~A~~VI~ 1080 (1159)
.|++|.|||.-..+.+++++.....+..++.++|..+..+. +.| .+.+|++-| .+..+|+++. --+.|+.
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W---~~~~VviYT-~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW---KKYDVVIYT-PVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc---cceeEEEEe-ceEEEEeccchhhceEEEE
Confidence 79999999999999999999999999999999888765522 333 457888866 7888999986 3455555
Q ss_pred e--cCCCCcCh--hhHHhhhhcccCCCCcEEEEE
Q 001094 1081 L--DLWWNPTT--EDQAIDRAHRIGQTRPVSVLR 1110 (1159)
Q Consensus 1081 l--D~~WNP~~--e~QAigR~hRiGQtk~V~V~r 1110 (1159)
| ....-|.. ..|.+||+..++.. ++.||.
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~ 385 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYI 385 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEE
Confidence 5 22233543 47999999999754 455553
No 233
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.17 E-value=0.67 Score=57.67 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=40.0
Q ss_pred hccccccCCCCCCcc-----chhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 837 ASLAICGICNDPPED-----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~-----~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
.....|.||.+.... +-..+|+|.||..|+..|+.. ...||. |+..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~--CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPT--CRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCc--chhhhh
Confidence 345789999998877 678899999999999999987 789998 666433
No 234
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=81.08 E-value=0.71 Score=51.84 Aligned_cols=48 Identities=23% Similarity=0.643 Sum_probs=38.7
Q ss_pred hhccccccCCCCCCccc-hhcccCccchhhhHHhhhhcCCCCCCCccccc
Q 001094 836 EASLAICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKI 884 (1159)
Q Consensus 836 e~~~~~C~iC~~~~~~~-~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~ 884 (1159)
......|++|...-.+| +++.-|-+||..|+..++. ..+.||+.+|..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcc
Confidence 34457899998765544 6777899999999999998 788999977764
No 235
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=80.63 E-value=7.7 Score=49.56 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=23.9
Q ss_pred eeEEEEccCcccCCc-hh-------HHHHHHHhc--ccCcEEEEeccC
Q 001094 633 WFRVVLDEAQSIKNH-RT-------QVARACWGL--RAKRRWCLSGTP 670 (1159)
Q Consensus 633 w~rVIlDEAH~IKN~-~S-------~~~ral~~L--~a~~RwlLTGTP 670 (1159)
|+.|||||+-.+-+. .| .....+..+ ++++.+++-||-
T Consensus 143 yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 143 YDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 899999998655332 11 111222222 688999999984
No 236
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=79.26 E-value=5 Score=50.17 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=34.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 387 GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 387 ~~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
|.......|||++-..-|.... ++--.+.-..-+|||..++..|..
T Consensus 11 G~w~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g~ 56 (557)
T PF05876_consen 11 GPWRTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIGY 56 (557)
T ss_pred CCCCCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhceE
Confidence 4456788999999888776432 345677777899999977777654
No 237
>PHA02533 17 large terminase protein; Provisional
Probab=79.10 E-value=21 Score=44.44 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 388 ~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
...++|.|+|+.-+.+|... +=.++.=.=..|||..+.++++.
T Consensus 55 ~~Pf~L~p~Q~~i~~~~~~~-------R~~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 55 TIKVQMRDYQKDMLKIMHKN-------RFNACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred ceecCCcHHHHHHHHHHhcC-------eEEEEEEcCcCChHHHHHHHHHH
Confidence 34578999999998887421 11255555689999887666543
No 238
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.85 E-value=0.93 Score=50.37 Aligned_cols=41 Identities=29% Similarity=0.580 Sum_probs=33.4
Q ss_pred ccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCC
Q 001094 838 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
..+.|.||-.+..+||++.|+|.||..|....+... ..|+.
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~v 280 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYV 280 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccC-Cccee
Confidence 346699999999999999999999999998776542 34543
No 239
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.62 E-value=6 Score=46.39 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=65.8
Q ss_pred cEEEEeChh-hHHHHHHHHHHhcCCCCCcEEE-EEeCCCCCCChhhcC-CCCEEEechhhHhhccCCCCCCCchhHHHHh
Q 001094 505 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVL-VYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 581 (1159)
Q Consensus 505 ~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vl-vy~G~~r~~~~~~l~-~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~ 581 (1159)
..||+.|+. |..|-.+=++..-..- .++.. .|+|..-......+. ..||||.|-..+.--.-
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v-------------- 156 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV-------------- 156 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh--------------
Confidence 479999998 5555544333322211 35444 666665555555554 78999988777631100
Q ss_pred hhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCcccceeEEEEccCcccCC--chhHHHHHHHhcc
Q 001094 582 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACWGLR 659 (1159)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN--~~S~~~ral~~L~ 659 (1159)
.-.|.--...+||+|||.+|-. ..-+..+.+.++.
T Consensus 157 -------------------------------------------em~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 157 -------------------------------------------EMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred -------------------------------------------heeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 0002222234799999999843 4567777788884
Q ss_pred -cCcEEEEeccC
Q 001094 660 -AKRRWCLSGTP 670 (1159)
Q Consensus 660 -a~~RwlLTGTP 670 (1159)
....+++|||-
T Consensus 194 ~~~QTllfSatl 205 (529)
T KOG0337|consen 194 ESRQTLLFSATL 205 (529)
T ss_pred CcceEEEEeccC
Confidence 44689999994
No 240
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.38 E-value=1.4 Score=47.90 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=41.6
Q ss_pred EeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCC
Q 001094 1060 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1060 LlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk 1104 (1159)
++++...|.|++..+.|.||.||.+-.+.....+++|+.|.|-+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 557899999999999999999999999999999999999999654
No 241
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.56 E-value=1.4 Score=50.90 Aligned_cols=48 Identities=31% Similarity=0.620 Sum_probs=39.2
Q ss_pred ccccCCCCCCcc---chhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 840 AICGICNDPPED---AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 840 ~~C~iC~~~~~~---~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
..|.||.+.-+. -.+.+|.|.|=..||..||+.....||. |+......
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv--CK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV--CKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC--CCCcCCCC
Confidence 489999987543 3578999999999999999999888998 77654443
No 242
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=75.34 E-value=38 Score=37.97 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.6
Q ss_pred ceeecCCCCchhHHHHHHH
Q 001094 417 GILADDQGLGKTISTIALI 435 (1159)
Q Consensus 417 GILADemGLGKTlqaIAlI 435 (1159)
-||.=..|.|||..|-++.
T Consensus 45 vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILG 63 (261)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999998886554
No 243
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=75.06 E-value=1.5 Score=45.92 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=13.0
Q ss_pred hcCCCCEEEechhhHhh
Q 001094 548 ELAKFDVVITTYSIVSM 564 (1159)
Q Consensus 548 ~l~~~DVVItTY~~l~~ 564 (1159)
....+||||++|..|-.
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 34578999999999964
No 244
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=74.65 E-value=1.6 Score=36.51 Aligned_cols=45 Identities=27% Similarity=0.676 Sum_probs=32.8
Q ss_pred cccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 841 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 841 ~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
.|-.|........+.+|||++|..|..-. +-+.||. |.+++...+
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPf--C~~~~~~~~ 53 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPF--CGTPFEFDD 53 (55)
T ss_pred eEEEccccccccccccccceeeccccChh---hccCCCC--CCCcccCCC
Confidence 45667777677889999999999998642 2357887 777766543
No 245
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=73.53 E-value=16 Score=45.37 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=30.5
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc-------ccC-cEEEEeccCCCCChHHHHhc
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSY 681 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L-------~a~-~RwlLTGTPiqN~l~DLysl 681 (1159)
.+..|||||||. +|-.+..+..| +.. +.+++|||-=-..+.+++.-
T Consensus 163 kYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 163 KYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cccEEEEechhh----hhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 467999999994 45555554433 333 66889999765555555554
No 246
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.17 E-value=4.3 Score=49.46 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=35.4
Q ss_pred cEEEEeChh-hHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCC---ChhhcCCCCEEEechhhHhhc
Q 001094 505 GTLVVCPTS-VLRQWAEELRNKVT-SKGSLSVLVYHGSSRTK---DPCELAKFDVVITTYSIVSME 565 (1159)
Q Consensus 505 ~tLIV~P~s-Ll~QW~~Ei~k~~~-~~~~l~Vlvy~G~~r~~---~~~~l~~~DVVItTY~~l~~e 565 (1159)
..+||.|.- |..|-..|..+..- ....+++.-+....... ....-..||++|.|-..+...
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~ 276 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGL 276 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHH
Confidence 368999997 77999999987651 11233333333321111 122234678888887666543
No 247
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.06 E-value=2.4 Score=49.18 Aligned_cols=57 Identities=28% Similarity=0.525 Sum_probs=42.7
Q ss_pred HHHhhhccccccCCCCCC---ccchhcccCccchhhhHHhhhhc-------CCCCCCCccccccccc
Q 001094 832 LNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCICERLTA-------DDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 832 l~~le~~~~~C~iC~~~~---~~~~i~~CgH~~C~~Ci~~~l~~-------~~~~Cp~~~c~~~~~~ 888 (1159)
+..+..++..|.||.+.. ......+|+|+||..|...+.+. ..-+||...|......
T Consensus 177 ~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~ 243 (445)
T KOG1814|consen 177 LEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPP 243 (445)
T ss_pred HHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCc
Confidence 445667789999999764 34578899999999999998763 2247898888764433
No 248
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=72.56 E-value=13 Score=46.14 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=84.2
Q ss_pred cCCceEEEEcCcHHHHHHHHHHHhhC------CC--cEEecCCCCCHHHHHHHHHHHhcCC-CceEEEeeccccccccCc
Q 001094 1002 LGGEKAIVFSQWTKMLDLLEASLKDS------SI--QYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNM 1072 (1159)
Q Consensus 1002 ~~~~KvIIFSq~t~~LdlLe~~L~~~------gi--~~~rldGs~s~~~R~~~v~~F~~d~-~~~VLLlStkagg~GLNL 1072 (1159)
++..-+|||=.-..-++.+...|.+. +. -++-++|+++.++..++ |...| +.+=+++||..+-..|..
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEe
Confidence 45668999998888888777777653 12 24568999998877665 66544 677777798999988888
Q ss_pred cccCEEEE----ecCCCCcC-----------hhhHHhhhhcccCCCCcEEEEEEEeCCCHH
Q 001094 1073 VAACHVLL----LDLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1073 ~~A~~VI~----lD~~WNP~-----------~e~QAigR~hRiGQtk~V~V~rLv~~~TIE 1118 (1159)
.+-.+||= ---.|||. .-.||.-|++|-|.+.+..+|||+++.-.+
T Consensus 333 ~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 333 DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 87777651 11235653 556888899999999999999999987663
No 249
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=72.31 E-value=14 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.0
Q ss_pred cceeecCCCCchhHHHHHHHH
Q 001094 416 GGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~ 436 (1159)
-.|+|-++|.|||-|.=-++.
T Consensus 273 vvIIcGeTGsGKTTQvPQFLY 293 (1172)
T KOG0926|consen 273 VVIICGETGSGKTTQVPQFLY 293 (1172)
T ss_pred eEEEecCCCCCccccchHHHH
Confidence 479999999999999877664
No 250
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.11 E-value=2.3 Score=49.26 Aligned_cols=46 Identities=33% Similarity=0.833 Sum_probs=34.0
Q ss_pred ccccccCCCCCCccc--------hhcccCccchhhhHHhhhhcCC------CCCCCcccccc
Q 001094 838 SLAICGICNDPPEDA--------VVSICGHVFCNQCICERLTADD------NQCPTRNCKIR 885 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~--------~i~~CgH~~C~~Ci~~~l~~~~------~~Cp~~~c~~~ 885 (1159)
....|+||++..... ++..|.|.||..||..|..... ..||. |+..
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~--CRv~ 219 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPF--CRVP 219 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCc--ccCc
Confidence 346799999765433 3467999999999999885443 67886 6653
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.55 E-value=68 Score=41.38 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=37.3
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc---ccCcEEEEeccCCCCChHHHHhchhcccccCCC
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA 691 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L---~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~ 691 (1159)
+|.++||||+|++.+. .....++.| ....+++|+.|=.+.=+.-|.|-...++..++.
T Consensus 119 r~KVIIIDEah~LT~~--A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH--AFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CceEEEEeChhhCCHH--HHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 5778999999999542 223333444 456788998887666555666655555544443
No 252
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.14 E-value=2.1 Score=49.01 Aligned_cols=47 Identities=32% Similarity=0.662 Sum_probs=39.8
Q ss_pred ccccccCCCCCCccchhcccCc-cchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 838 SLAICGICNDPPEDAVVSICGH-VFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH-~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...+|-||+..+-+-++.+|.| -.|..|..... ...+.||. ||..+.
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPI--CRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPI--CRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCc--cccchH
Confidence 3568999999999999999999 58999998766 66788998 887654
No 253
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=68.90 E-value=8.7 Score=44.62 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 393 L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
.-.+|+.|+.-++.-+-. =..|.---|.|||+-|+|..+.
T Consensus 229 rn~eQ~~ALdlLld~dI~-----lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 229 RNAEQRVALDLLLDDDID-----LVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred ccHHHHHHHHHhcCCCCC-----eEEeeccCCccHhHHHHHHHHH
Confidence 446999999888753322 1456667899999988776544
No 254
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.62 E-value=2.8 Score=45.33 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.5
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhh
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLT 871 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~ 871 (1159)
.-|..|..|.-+|++++=||+||.+||.+++-
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 45999999999999999999999999999874
No 255
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=66.33 E-value=4.4 Score=39.73 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.0
Q ss_pred eEEEEccCcccCCchhHHHHHHHhc--ccCcEEEEeccC
Q 001094 634 FRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTP 670 (1159)
Q Consensus 634 ~rVIlDEAH~IKN~~S~~~ral~~L--~a~~RwlLTGTP 670 (1159)
.+|||||+|++. +......++.+ .....++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25555555555 677789999999
No 256
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.32 E-value=18 Score=39.72 Aligned_cols=61 Identities=25% Similarity=0.194 Sum_probs=43.4
Q ss_pred cEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-ChhhcC-CCCEEEechhhHhhc
Q 001094 505 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELA-KFDVVITTYSIVSME 565 (1159)
Q Consensus 505 ~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~l~-~~DVVItTY~~l~~e 565 (1159)
.+||+|-+. |..|-..|..++-.--+..+|-++.|.-..+ +...+. -..||+-|-+.+.+.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilAL 175 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILAL 175 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHH
Confidence 479999887 7799999987765444588999999876544 333333 456888887777543
No 257
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=66.03 E-value=22 Score=45.47 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccccccc
Q 001094 395 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 474 (1159)
Q Consensus 395 phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 474 (1159)
-.|-.++.-+.+.-..+. +.-+|---.|.|||+++..++...
T Consensus 12 ~~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~------------------------------------ 53 (655)
T TIGR00631 12 GDQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV------------------------------------ 53 (655)
T ss_pred hHHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh------------------------------------
Confidence 478888887776543221 123566778999999987776431
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCC
Q 001094 475 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTS 528 (1159)
Q Consensus 475 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~ 528 (1159)
.+|+|||+|.. +..||.+|++.+++.
T Consensus 54 ----------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 54 ----------------------------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred ----------------------------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 23699999997 668999999999873
No 258
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=64.86 E-value=2.8 Score=45.69 Aligned_cols=45 Identities=31% Similarity=0.798 Sum_probs=30.6
Q ss_pred ccccCCCCCCc-cc-hhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 840 AICGICNDPPE-DA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 840 ~~C~iC~~~~~-~~-~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
..|.-|.--+. ++ .+|.|+|+||..|.--.... .||. |+..+...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~l--Ckk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCPL--CKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCcc---cccc--ccceeeee
Confidence 35777875443 44 58999999999998543322 7776 88765544
No 259
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=64.59 E-value=6.2 Score=36.29 Aligned_cols=45 Identities=33% Similarity=0.737 Sum_probs=32.6
Q ss_pred cccCCCCCCcc-c-hhcccCccchhhhHHhhhhcC--CCCCCCcccccccc
Q 001094 841 ICGICNDPPED-A-VVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLS 887 (1159)
Q Consensus 841 ~C~iC~~~~~~-~-~i~~CgH~~C~~Ci~~~l~~~--~~~Cp~~~c~~~~~ 887 (1159)
.|+.|..|-.+ | +.-.|+|.|-..||.+++... ...||. ||..+.
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPm--CR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPM--CRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCC--cCCeee
Confidence 35555555443 3 456799999999999999864 578998 776543
No 260
>PF04641 Rtf2: Rtf2 RING-finger
Probab=63.12 E-value=5.2 Score=45.02 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=38.3
Q ss_pred ccccccCCCCCCcc----chhcccCccchhhhHHhhhhcCCCCCCCccccccccccchh
Q 001094 838 SLAICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 892 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~----~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf 892 (1159)
....||++...+.. -.+-+|||+||..|+.+.- .+..||. |...+....++
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~--c~~~f~~~DiI 166 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPV--CGKPFTEEDII 166 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccc--cCCccccCCEE
Confidence 45789999877743 2467899999999999983 4667887 87777655443
No 261
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.64 E-value=2.9 Score=48.03 Aligned_cols=44 Identities=39% Similarity=0.890 Sum_probs=33.1
Q ss_pred ccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 838 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
....|-+|.+.+.+++.-+|||+.| |........ +||. |+..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l~--~CPv--CR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHLP--QCPV--CRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhCC--CCch--hHHHHH
Confidence 3467999999999999999999988 665443332 3887 876543
No 262
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.61 E-value=3.7 Score=44.41 Aligned_cols=40 Identities=28% Similarity=0.486 Sum_probs=32.0
Q ss_pred cccccCCCCCCcc----chhcccCccchhhhHHhhhhcCCCCCCC
Q 001094 839 LAICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 839 ~~~C~iC~~~~~~----~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
..+|++|-+...+ +++.+|||++|.+|++.++..| ..||.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv 264 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPV 264 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccC
Confidence 4689999887655 4789999999999999988764 45554
No 263
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=61.77 E-value=30 Score=45.11 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.5
Q ss_pred ceeecCCCCchhHHHHHHHHh
Q 001094 417 GILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 417 GILADemGLGKTlqaIAlI~~ 437 (1159)
.||+-++|.|||-|.=-+++.
T Consensus 68 vii~getGsGKTTqlP~~lle 88 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFLLE 88 (845)
T ss_pred EEEeCCCCCChHHHHHHHHHh
Confidence 699999999999988666543
No 264
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=60.84 E-value=15 Score=43.49 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=36.0
Q ss_pred EEEEeChh-hHHHHHHHHHHhcCC-CCCcEEEEEeCC-CCCCCh-hhcCCCCEEEechhhHhhc
Q 001094 506 TLVVCPTS-VLRQWAEELRNKVTS-KGSLSVLVYHGS-SRTKDP-CELAKFDVVITTYSIVSME 565 (1159)
Q Consensus 506 tLIV~P~s-Ll~QW~~Ei~k~~~~-~~~l~Vlvy~G~-~r~~~~-~~l~~~DVVItTY~~l~~e 565 (1159)
.+|+||+- |..|-...|.+.+.. ...++++-...+ +.+... .-....||||+|-..+-..
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 68999998 778888887765421 113444433321 111122 2235789999998888654
No 265
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=59.63 E-value=34 Score=37.61 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
+-||+-|.+-+..|..-. ...+.++=--||-|||-..+=+++
T Consensus 22 iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla 63 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLA 63 (229)
T ss_pred ceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHH
Confidence 458999999999998532 235678899999999976654443
No 266
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.63 E-value=6 Score=47.01 Aligned_cols=53 Identities=38% Similarity=0.822 Sum_probs=39.1
Q ss_pred cccccCCCC-CCcc---chhcccCccchhhhHHhhhh-----cCCCCCCCccccccccccch
Q 001094 839 LAICGICND-PPED---AVVSICGHVFCNQCICERLT-----ADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 839 ~~~C~iC~~-~~~~---~~i~~CgH~~C~~Ci~~~l~-----~~~~~Cp~~~c~~~~~~~~v 891 (1159)
...|.+|.. .+.. ..+..|+|.||.+|+..++. +....||...|...+.....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 357999983 3322 23567999999999998887 45678999889887766543
No 267
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.23 E-value=4.9 Score=47.51 Aligned_cols=45 Identities=27% Similarity=0.679 Sum_probs=34.7
Q ss_pred ccccccCCCCCCc-----------------cchhcccCccchhhhHHhhhhcCCCCCCCccc
Q 001094 838 SLAICGICNDPPE-----------------DAVVSICGHVFCNQCICERLTADDNQCPTRNC 882 (1159)
Q Consensus 838 ~~~~C~iC~~~~~-----------------~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c 882 (1159)
....|.||+.+.+ .-.+|+|.|+|-.+|...++.+-.-.||...|
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~ 631 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRC 631 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCC
Confidence 3467999986532 12467999999999999999887789998443
No 268
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=56.39 E-value=8.6 Score=49.52 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCcc--ceeecCCCCchhHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSG--GILADDQGLGKTISTI 432 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~G--GILADemGLGKTlqaI 432 (1159)
..-|+-|.+-+.-+.+.........+ .++=-.+|.|||+--|
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL 67 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL 67 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH
Confidence 35688998866666554332100012 2333479999998654
No 269
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=56.26 E-value=3.9 Score=50.67 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=51.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCC-----HHHHHHHHHHHhcC---CCceEEEee--ccccccccCcc
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS-----VFARDKAVKDFNTL---PEVSVMIMS--LKAASLGLNMV 1073 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s-----~~~R~~~v~~F~~d---~~~~VLLlS--tkagg~GLNL~ 1073 (1159)
+.-||+|-..-..|..+...+++.|+- .++.|.-+ ...-+++++.|... +.. .||++ ..-.++|||+.
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~G-aiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRG-AILLAVVGGKLSEGINFS 706 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCC-eEEEEEeccccccccccc
Confidence 468899999999999999999987763 12222211 01145667777643 222 34444 23456899998
Q ss_pred --ccCEEEEecCCCC
Q 001094 1074 --AACHVLLLDLWWN 1086 (1159)
Q Consensus 1074 --~A~~VI~lD~~WN 1086 (1159)
-+.-|+++-+|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 4566777887773
No 270
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=55.99 E-value=9.9 Score=43.58 Aligned_cols=48 Identities=29% Similarity=0.593 Sum_probs=35.4
Q ss_pred hhhccccccCCCCCCc-------------cchhcccCccchhhhHHhhhhcCCCCCCCcccccc
Q 001094 835 LEASLAICGICNDPPE-------------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 885 (1159)
Q Consensus 835 le~~~~~C~iC~~~~~-------------~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~ 885 (1159)
+..+...|.||+|.+- .|--.+|||.+=..|...|+.. ...||. |+..
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPI--Cr~p 343 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPI--CRRP 343 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCc--ccCc
Confidence 3455678999998632 2345789999999999888754 467887 7665
No 271
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=55.86 E-value=10 Score=31.14 Aligned_cols=42 Identities=24% Similarity=0.772 Sum_probs=21.4
Q ss_pred ccCCCCCCcc--chhc--ccCccchhhhHHhhhhcCCCCCCCcccccc
Q 001094 842 CGICNDPPED--AVVS--ICGHVFCNQCICERLTADDNQCPTRNCKIR 885 (1159)
Q Consensus 842 C~iC~~~~~~--~~i~--~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~ 885 (1159)
|++|.++... ..+. .||+.+|..|....+....+.||. |+..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPg--Cr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPG--CREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TT--T--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCC--CCCC
Confidence 6777766522 2233 489999999999999888899996 7653
No 272
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=55.64 E-value=1.1e+02 Score=29.54 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=25.0
Q ss_pred eeEEEEccCcccCCch-hHHHHHHHhc------ccCcEEEEeccCCCC
Q 001094 633 WFRVVLDEAQSIKNHR-TQVARACWGL------RAKRRWCLSGTPIQN 673 (1159)
Q Consensus 633 w~rVIlDEAH~IKN~~-S~~~ral~~L------~a~~RwlLTGTPiqN 673 (1159)
...+|+||++.+.... ......+..+ ....++++++++...
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 3579999999883222 2233333333 246678888887664
No 273
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.31 E-value=42 Score=43.43 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
+.||.|++-..-..+--..+ ..++|---+|.|||+.+|+..+.
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 46999999888877755543 44788899999999999877665
No 274
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.21 E-value=7.1 Score=45.49 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=34.5
Q ss_pred ccccccCCCCCC---ccchhcccCccchhhhHHhhhhcCC--CCCCCccccc
Q 001094 838 SLAICGICNDPP---EDAVVSICGHVFCNQCICERLTADD--NQCPTRNCKI 884 (1159)
Q Consensus 838 ~~~~C~iC~~~~---~~~~i~~CgH~~C~~Ci~~~l~~~~--~~Cp~~~c~~ 884 (1159)
+.+.||+--+-. ..|....|||++|.+.+.....+.. .+||. |..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPY--CP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPY--CPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCC--CCc
Confidence 457899965432 2357788999999999999888877 88987 654
No 275
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=55.10 E-value=9.5 Score=37.80 Aligned_cols=54 Identities=30% Similarity=0.669 Sum_probs=41.3
Q ss_pred hhhccccccCCCCCCccc-hhc---ccCccchhhhHHhhhhcC--CCCCCCccccccccccc
Q 001094 835 LEASLAICGICNDPPEDA-VVS---ICGHVFCNQCICERLTAD--DNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 835 le~~~~~C~iC~~~~~~~-~i~---~CgH~~C~~Ci~~~l~~~--~~~Cp~~~c~~~~~~~~ 890 (1159)
++..+.+|.||.+...+. ++. .||-.+|..|....|..- -..||+ |++.+..+.
T Consensus 76 ~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPv--CkTSFKss~ 135 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPV--CKTSFKSSS 135 (140)
T ss_pred cCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCc--ccccccccc
Confidence 345678899999886554 554 499999999999988754 468987 998776653
No 276
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.46 E-value=1.1e+02 Score=39.03 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=31.8
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc---ccCcEEEEeccCCCCChHHHHhchhcccccCCC
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFA 691 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L---~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~ 691 (1159)
+|.++||||+|++-.. .....++.| ....+++|+.|=...-+.-+.+-...+...++.
T Consensus 118 k~KV~IIDEVh~LS~~--A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs 178 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH--SFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLA 178 (702)
T ss_pred CcEEEEEechHhcCHH--HHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCC
Confidence 4678999999998432 222223333 344578887765444444444444444444443
No 277
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=51.10 E-value=71 Score=41.72 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
..|-.-|+.|+...+..+.. .++---+|.|||-+..++|-
T Consensus 668 ~~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIk 707 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIK 707 (1100)
T ss_pred hhcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHH
Confidence 36788999999988876543 34444689999987777763
No 278
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=50.29 E-value=67 Score=41.19 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
..|.++|..++.-+...-..+. +..+|---.|.|||+.+.+++..
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~--~~~ll~Gl~gs~ka~lia~l~~~--------------------------------- 55 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGE--KHQTLLGVTGSGKTFTMANVIAR--------------------------------- 55 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCC--CcEEEEcCCCcHHHHHHHHHHHH---------------------------------
Confidence 4678899999998876543221 12356667899999987665532
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEE
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVY 537 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy 537 (1159)
..+++|||+|.. ...||.+++..+++. ..|..|
T Consensus 56 -------------------------------~~r~vLIVt~~~~~A~~l~~dL~~~~~~---~~v~~f 89 (652)
T PRK05298 56 -------------------------------LQRPTLVLAHNKTLAAQLYSEFKEFFPE---NAVEYF 89 (652)
T ss_pred -------------------------------hCCCEEEEECCHHHHHHHHHHHHHhcCC---CeEEEe
Confidence 123589999996 678999999998863 344444
No 279
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=49.96 E-value=56 Score=38.48 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 397 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 397 Q~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
|..++..+......+.....-++.-..|+|||..+..++..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHH
Confidence 44455555554443322234677899999999988877654
No 280
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=49.77 E-value=31 Score=45.14 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=40.4
Q ss_pred CCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhhH
Q 001094 502 PAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 562 (1159)
Q Consensus 502 p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~l 562 (1159)
|.+.+.+|+|.. |+.--.+.+.+....+ .++++-..|.... +.......+++|||.+..
T Consensus 972 p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~p-d~~~v~~~~~~ittpek~ 1031 (1230)
T KOG0952|consen 972 PGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTP-DVKAVREADIVITTPEKW 1031 (1230)
T ss_pred CCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCC-ChhheecCceEEcccccc
Confidence 445689999986 5544444444443333 6888888886554 467788999999998765
No 281
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.50 E-value=1.6e+02 Score=36.69 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=32.5
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc---ccCcEEEEeccCCCCChHHHHhchhcccccCC
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L---~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~ 690 (1159)
+|.++||||+|.+-. ......++.| ....+++|..|-.+.-+.-+.+-...+...++
T Consensus 119 ~~kV~iIDE~~~ls~--~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l 178 (509)
T PRK14958 119 RFKVYLIDEVHMLSG--HSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQL 178 (509)
T ss_pred CcEEEEEEChHhcCH--HHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCC
Confidence 477899999999853 2222233333 34566777666555555445554443444444
No 282
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.29 E-value=1.1e+02 Score=36.12 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.2
Q ss_pred ceeecCCCCchhHHHHHHHHh
Q 001094 417 GILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 417 GILADemGLGKTlqaIAlI~~ 437 (1159)
-+|.=+.|.|||..+.+++..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 478999999999888777643
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.62 E-value=6.5 Score=45.71 Aligned_cols=59 Identities=32% Similarity=0.561 Sum_probs=43.5
Q ss_pred cccccCCCCCCccc-----hhcccCccchhhhHHhhhhcC-CCCCCCccccccccccchhhhhhhcc
Q 001094 839 LAICGICNDPPEDA-----VVSICGHVFCNQCICERLTAD-DNQCPTRNCKIRLSLSSVFSKATLNN 899 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~-----~i~~CgH~~C~~Ci~~~l~~~-~~~Cp~~~c~~~~~~~~vf~~~~l~~ 899 (1159)
...|+||.|.-+.+ +...|||.|-.+||+.|+... --.||. |+..-....++....++.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~--c~~katkr~i~~e~alR~ 68 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPL--CSGKATKRQIRPEYALRV 68 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcc--cCChhHHHHHHHHHHHHH
Confidence 45799999876544 556799999999999999521 246876 888777777776655544
No 284
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.44 E-value=2.2e+02 Score=35.06 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=28.4
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc---ccCcEEEEeccCCCCChHHHHhch
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYF 682 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L---~a~~RwlLTGTPiqN~l~DLyslL 682 (1159)
.|.++||||+|++-. ......++.| ...-+++|+.|=...=+.-|.+-.
T Consensus 121 ~~KV~IIDEah~Ls~--~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 121 KYKVYIIDEVHMLTD--QSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred CCEEEEEechhhcCH--HHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 467899999999842 2223334444 345566676665444344455543
No 285
>PF13245 AAA_19: Part of AAA domain
Probab=47.06 E-value=36 Score=30.63 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.5
Q ss_pred ceeecCCCCchhHHHHHHHHh
Q 001094 417 GILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 417 GILADemGLGKTlqaIAlI~~ 437 (1159)
.++---.|.|||-+++.++..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 344677899999888888765
No 286
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=46.70 E-value=1.6e+02 Score=38.79 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
.|-+.++..-++...+. .=-++.-|.|-|||.|+--+|+.
T Consensus 172 LPa~~~r~~Il~~i~~~-------qVvvIsGeTGcGKTTQvpQfiLd 211 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEEN-------QVVVISGETGCGKTTQVPQFILD 211 (924)
T ss_pred CccHHHHHHHHHHHHhC-------ceEEEeCCCCCCchhhhhHHHHH
Confidence 44567777777666542 23588899999999999999976
No 287
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.34 E-value=42 Score=41.92 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhC------CCcEEecCCCCCHHHHHHHHHHHh-cCCCceEEEeeccccccccCccccCEEEEec----C
Q 001094 1015 KMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFN-TLPEVSVMIMSLKAASLGLNMVAACHVLLLD----L 1083 (1159)
Q Consensus 1015 ~~LdlLe~~L~~~------gi~~~rldGs~s~~~R~~~v~~F~-~d~~~~VLLlStkagg~GLNL~~A~~VI~lD----~ 1083 (1159)
.+.++|...|.+. ++.++-|...++.+-..++ |+ ..++++-.|++|..+-..|....-.+||=.- -
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 3556666666542 5667778888886655544 66 3467777788889999988888777776321 1
Q ss_pred CCCcC-----------hhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHH
Q 001094 1084 WWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1122 (1159)
Q Consensus 1084 ~WNP~-----------~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl 1122 (1159)
-+||. ...||--|++|-|.+.+=+-|||+++++....|+
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 24443 3456667777777888999999999988776555
No 288
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=46.07 E-value=27 Score=39.86 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.5
Q ss_pred cceeecCCCCchhHHHHHHHH
Q 001094 416 GGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~ 436 (1159)
+-+|--+.|.|||..|-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 457778999999998866653
No 289
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=45.98 E-value=41 Score=44.09 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=76.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC-------CCcEEecCCCCCHHHHHHHHHHHhcCC-CceEEEeeccccccccCccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVA 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~-------gi~~~rldGs~s~~~R~~~v~~F~~d~-~~~VLLlStkagg~GLNL~~ 1074 (1159)
...-||||-.-..-+..+...|... .+-.+.++++|+..+.+++ |+..+ +++=+|++|..+-..|..-.
T Consensus 412 ~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdD 488 (924)
T KOG0920|consen 412 FEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDD 488 (924)
T ss_pred CCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccC
Confidence 4568999999888888888877531 2556788999998776665 66653 55666778899988888877
Q ss_pred cCEEE--------EecCC---------C-CcChhhHHhhhhcccCCCCcEEEEEEEeCCCH
Q 001094 1075 ACHVL--------LLDLW---------W-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117 (1159)
Q Consensus 1075 A~~VI--------~lD~~---------W-NP~~e~QAigR~hRiGQtk~V~V~rLv~~~TI 1117 (1159)
.-+|| .|||. | .-+.-.||.||++|. ++=..|+|+++.-.
T Consensus 489 VvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 489 VVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRY 546 (924)
T ss_pred eEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhh
Confidence 66665 33432 3 334556888877774 56678888876543
No 290
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=44.93 E-value=71 Score=38.27 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.4
Q ss_pred ccceeecCCCCchhHHHHHHHHh
Q 001094 415 SGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 415 ~GGILADemGLGKTlqaIAlI~~ 437 (1159)
.+-|+.-..|.|||..+.++...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34568899999999999888654
No 291
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=44.88 E-value=1.5e+02 Score=31.99 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=23.5
Q ss_pred EEEEccCcccCCch---hHHHHHHHhc-ccCcEEEEeccCCC
Q 001094 635 RVVLDEAQSIKNHR---TQVARACWGL-RAKRRWCLSGTPIQ 672 (1159)
Q Consensus 635 rVIlDEAH~IKN~~---S~~~ral~~L-~a~~RwlLTGTPiq 672 (1159)
.|||||+|.+.... ......+..+ ....++++|+|+..
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 69999999986532 2233333333 33467888888543
No 292
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.55 E-value=6.6 Score=43.63 Aligned_cols=39 Identities=44% Similarity=1.026 Sum_probs=30.2
Q ss_pred cccccCCCCCCccchhcccCc-cchhhhHHhhhhcCCCCCCCccccc
Q 001094 839 LAICGICNDPPEDAVVSICGH-VFCNQCICERLTADDNQCPTRNCKI 884 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH-~~C~~Ci~~~l~~~~~~Cp~~~c~~ 884 (1159)
...|.||+|.|-+-++..||| +-|.+|-... +-||. |+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPI--CRq 339 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPI--CRQ 339 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCch--HHH
Confidence 357999999999999999999 6688886432 26776 554
No 293
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=44.49 E-value=3.8e+02 Score=27.68 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=27.2
Q ss_pred ceeEEEEccCcccCCchhHHHHHH-Hhc---ccCcEEEEeccCCCCChHHHHh
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARAC-WGL---RAKRRWCLSGTPIQNAIDDLYS 680 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral-~~L---~a~~RwlLTGTPiqN~l~DLys 680 (1159)
.|..+||||||.+-. ....|+ +.| ...-+|+|+.+=..+=+.-+.|
T Consensus 102 ~~KviiI~~ad~l~~---~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 102 KYKVIIIDEADKLTE---EAQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SSEEEEEETGGGS-H---HHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred CceEEEeehHhhhhH---HHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 467899999998742 222333 333 5677888887755544444444
No 294
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=44.18 E-value=11 Score=42.15 Aligned_cols=45 Identities=31% Similarity=0.736 Sum_probs=30.9
Q ss_pred hccccccCCCCCCcc-chhcccCccchhhhHHhhhhcCCCCCCCccccccc
Q 001094 837 ASLAICGICNDPPED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 886 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~-~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~ 886 (1159)
..+-.|.-|.-+..- --+.+|.|+||.+|.... .+..||. |..++
T Consensus 88 p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~--C~d~V 133 (389)
T KOG2932|consen 88 PRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPL--CDDRV 133 (389)
T ss_pred cceEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcC--cccHH
Confidence 345579999877543 346799999999997532 2557776 65543
No 295
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=43.60 E-value=54 Score=42.67 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=31.6
Q ss_pred EEEEeChhhHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhhHh
Q 001094 506 TLVVCPTSVLRQWAE-ELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 563 (1159)
Q Consensus 506 tLIV~P~sLl~QW~~-Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~l~ 563 (1159)
.|.+.|--.+-|=+. ++..+ ..+-++.|--|.|.. .......+-+|.|.|-+.-.
T Consensus 272 ~llilp~vsiv~Ek~~~l~~~-~~~~G~~ve~y~g~~--~p~~~~k~~sv~i~tiEkan 327 (1008)
T KOG0950|consen 272 VLLILPYVSIVQEKISALSPF-SIDLGFPVEEYAGRF--PPEKRRKRESVAIATIEKAN 327 (1008)
T ss_pred eeEecceeehhHHHHhhhhhh-ccccCCcchhhcccC--CCCCcccceeeeeeehHhhH
Confidence 677777765555443 34433 334467777787532 23333455678888866554
No 296
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=43.53 E-value=41 Score=38.85 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.4
Q ss_pred cceeecCCCCchhHHHHHHHHh
Q 001094 416 GGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~~ 437 (1159)
.-+|.-+.|.|||..+.+++..
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4688899999999999888644
No 297
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=43.03 E-value=88 Score=39.82 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=27.3
Q ss_pred CcEEEEeChh-hHHHHHHHHHHhc-C-CCCCcEEEEEeCCCCCC
Q 001094 504 AGTLVVCPTS-VLRQWAEELRNKV-T-SKGSLSVLVYHGSSRTK 544 (1159)
Q Consensus 504 ~~tLIV~P~s-Ll~QW~~Ei~k~~-~-~~~~l~Vlvy~G~~r~~ 544 (1159)
+++||.+|+. |..|+.+++.... . ....+++.+..|....-
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nYl 90 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEFV 90 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCcccc
Confidence 3588999986 7788888877543 1 11257777777765443
No 298
>CHL00181 cbbX CbbX; Provisional
Probab=42.17 E-value=47 Score=37.91 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred ceeecCCCCchhHHHHHHHH
Q 001094 417 GILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 417 GILADemGLGKTlqaIAlI~ 436 (1159)
-+|-=..|.|||..|-++..
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47889999999998877753
No 299
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.40 E-value=20 Score=43.60 Aligned_cols=52 Identities=27% Similarity=0.650 Sum_probs=40.2
Q ss_pred ccccccCCCCCCcc-chhcccCccchhhhHHhhhhcC-----C--CCCCCcccccccccc
Q 001094 838 SLAICGICNDPPED-AVVSICGHVFCNQCICERLTAD-----D--NQCPTRNCKIRLSLS 889 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~-~~i~~CgH~~C~~Ci~~~l~~~-----~--~~Cp~~~c~~~~~~~ 889 (1159)
....|++|.+.... .+...|||.||..|+..++... . -.||...|.......
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 34789999988775 6677899999999999998752 1 368888887765543
No 300
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=41.29 E-value=80 Score=41.37 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=80.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh----CCCcEEecCCCCCHHHHHHHHHHHhcCCCc-eEEEeeccccccccCccccCE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACH 1077 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~----~gi~~~rldGs~s~~~R~~~v~~F~~d~~~-~VLLlStkagg~GLNL~~A~~ 1077 (1159)
...-+|||-.=..-++-....|.. ..+..+-++|.++.++..+ -|+..+.- +=+|+||..+-.+|......+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 567899999888888888888876 3577888999999888877 57765544 535668899999999988877
Q ss_pred EEEe----cCCCCcCh-----------hhHHhhhhcccCCCCcEEEEEEEeCCCHH
Q 001094 1078 VLLL----DLWWNPTT-----------EDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1078 VI~l----D~~WNP~~-----------e~QAigR~hRiGQtk~V~V~rLv~~~TIE 1118 (1159)
||=- .+-|||.. -..|.-|++|-|.+.+=..|||+.++..+
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 7621 12244432 22345555555566788899999986555
No 301
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=40.45 E-value=95 Score=28.69 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=34.6
Q ss_pred CCceEEEEcC------cHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHH
Q 001094 1003 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKD 1049 (1159)
Q Consensus 1003 ~~~KvIIFSq------~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~ 1049 (1159)
...+|+||+. +=..-..+.+.|+..|++|..++=....+.|+.+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 5689999987 5556778888999999999888755555555554443
No 302
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.44 E-value=1.6e+02 Score=38.04 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=56.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh-CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEe
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1081 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~-~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~l 1081 (1159)
.+.++||.+.-......+...|++ .|.....++|+++..+|.+...+... +++.|++.+..+. =+.+..-..||+=
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~IVVgTrsal--~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKVVIGARSAL--FLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEeccHHh--cccccCCCEEEEE
Confidence 467899999999998888888876 48889999999999999888877766 5677887654332 2334444555554
Q ss_pred c
Q 001094 1082 D 1082 (1159)
Q Consensus 1082 D 1082 (1159)
|
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 3
No 303
>PRK04195 replication factor C large subunit; Provisional
Probab=40.35 E-value=2.4e+02 Score=34.65 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=18.3
Q ss_pred CccceeecCCCCchhHHHHHHH
Q 001094 414 CSGGILADDQGLGKTISTIALI 435 (1159)
Q Consensus 414 ~~GGILADemGLGKTlqaIAlI 435 (1159)
.+..+|.-..|.|||..+-+++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala 60 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALA 60 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3668899999999998886665
No 304
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=40.28 E-value=93 Score=29.34 Aligned_cols=59 Identities=7% Similarity=-0.024 Sum_probs=41.1
Q ss_pred CCceEEEEcC------cHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEe
Q 001094 1003 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1061 (1159)
Q Consensus 1003 ~~~KvIIFSq------~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLl 1061 (1159)
..++|+||+. +=..-..+..+|...|++|..++=....+.|+.+.+......-+.|++-
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 5689999975 3455667888889999999888766666777766655544333455553
No 305
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=39.27 E-value=1.4e+02 Score=36.59 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=22.4
Q ss_pred eeEEEEccCcccCCchhH---HHHHHHhc-ccCcEEEEecc
Q 001094 633 WFRVVLDEAQSIKNHRTQ---VARACWGL-RAKRRWCLSGT 669 (1159)
Q Consensus 633 w~rVIlDEAH~IKN~~S~---~~ral~~L-~a~~RwlLTGT 669 (1159)
.++|||||+|.+.+.... ....+..+ .....+++|+.
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 358999999999764322 22223333 34456888843
No 306
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.11 E-value=1.6e+02 Score=36.54 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=55.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh-CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEe
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1081 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~-~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~l 1081 (1159)
.+.++||.+........+...|++ .+.....++|.++..+|.+...+-.. ++..|++.+..+.- +-+.....||+=
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~IVVGTrsalf--~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILVVIGTRSALF--LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCEEECChHHHc--CcccCCCEEEEE
Confidence 577899999999988888888876 47788999999999999888776665 56777775543321 223444444443
Q ss_pred c
Q 001094 1082 D 1082 (1159)
Q Consensus 1082 D 1082 (1159)
|
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 3
No 307
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=39.09 E-value=1.5e+02 Score=38.37 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHH----hhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASL----KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1078 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L----~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~V 1078 (1159)
.+.+++|.+.-...+..+...+ ...|++...++|+++..+|...+....+ +++.|++.+.......+.+.....|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEEEchHHHhcccchhcccceE
Confidence 5778999998887776655554 4457999999999999999999998887 6788888775545545555555444
Q ss_pred EE
Q 001094 1079 LL 1080 (1159)
Q Consensus 1079 I~ 1080 (1159)
|+
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 43
No 308
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=19 Score=41.69 Aligned_cols=47 Identities=34% Similarity=0.855 Sum_probs=33.8
Q ss_pred cccccCCCCCCc----cchhcccCccchhhhHHhhhhcCCC--CCCCcccccccc
Q 001094 839 LAICGICNDPPE----DAVVSICGHVFCNQCICERLTADDN--QCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~----~~~i~~CgH~~C~~Ci~~~l~~~~~--~Cp~~~c~~~~~ 887 (1159)
-++|.||.+-.. ..-+..|||+|=..|+..|+.++.. .||. |+-.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpi--c~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPI--CQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCc--eeeccc
Confidence 468999975432 1235669999999999999988754 6886 664333
No 309
>PF13173 AAA_14: AAA domain
Probab=37.89 E-value=27 Score=34.43 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=26.7
Q ss_pred eEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChH
Q 001094 634 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAID 676 (1159)
Q Consensus 634 ~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~ 676 (1159)
.+|||||+|++.+.....-.... -..+.++++||.-......
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d-~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVD-NGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHH-hccCceEEEEccchHHHhh
Confidence 47999999999764433322222 1245799999986554433
No 310
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=36.47 E-value=51 Score=42.86 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=65.4
Q ss_pred EecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCC-----CcChhhHHhhhhcccCC-CCc
Q 001094 1032 RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-----NPTTEDQAIDRAHRIGQ-TRP 1105 (1159)
Q Consensus 1032 ~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~W-----NP~~e~QAigR~hRiGQ-tk~ 1105 (1159)
...+.+.+.++|+-+=..|.+ +.++|+..+ ...+.|+||.+ .+||+=-|.. .-....|.+||++|.|= |..
T Consensus 526 AyHhaGLT~eER~~iE~afr~-g~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~G 602 (1008)
T KOG0950|consen 526 AYHHAGLTSEEREIIEAAFRE-GNIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLG 602 (1008)
T ss_pred eecccccccchHHHHHHHHHh-cCeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhcccccCc
Confidence 345666777888887778888 788888865 45899999984 5666644443 33466799999999983 322
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccC
Q 001094 1106 VSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETG 1142 (1159)
Q Consensus 1106 V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~ 1142 (1159)
-- -|+++..=..++.++...=......-++++.++
T Consensus 603 ds--iLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g 637 (1008)
T KOG0950|consen 603 DS--ILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNG 637 (1008)
T ss_pred ce--EEEeeccchhHHHHHHhcccccccccccccccc
Confidence 12 244444333444454444444444444444443
No 311
>PLN03025 replication factor C subunit; Provisional
Probab=36.45 E-value=59 Score=37.60 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=38.1
Q ss_pred ceeEEEEccCcccCCchh-HHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCc
Q 001094 632 GWFRVVLDEAQSIKNHRT-QVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 692 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S-~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~ 692 (1159)
.|.+|||||+|.+-.... ...+.+.......+++|+.++...-+..|-+-...+...++..
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~ 160 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCH
Confidence 478999999999843221 1112222224557899998877766667777666565555543
No 312
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=35.90 E-value=1.2e+02 Score=30.67 Aligned_cols=85 Identities=19% Similarity=0.150 Sum_probs=55.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhhCCCcE--EecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1006 KAIVFSQWTKMLDLLEASLKDSSIQY--RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1006 KvIIFSq~t~~LdlLe~~L~~~gi~~--~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
.|=++||.-.+...+-..+...|+.+ +.=.|....-.-.++++.|.+|++++++++- +|.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 46689999999999999998876654 5556665555778899999999999988865 354
Q ss_pred CCCcChhhHHhhhhcccCCCCcEEEEEE
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRL 1111 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~V~rL 1111 (1159)
.=||....++.-|+.|- |||.+++-
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE-
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeC
Confidence 55677777777777764 88888764
No 313
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.57 E-value=24 Score=40.36 Aligned_cols=46 Identities=30% Similarity=0.692 Sum_probs=36.2
Q ss_pred cccccCCCCCCc------cchhcccCccchhhhHHhhhhcCCCCCCCccccccc
Q 001094 839 LAICGICNDPPE------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 886 (1159)
Q Consensus 839 ~~~C~iC~~~~~------~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~ 886 (1159)
...|.+|++.-+ .|-+..|||.+|..|+...+......||. |+...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpf--cR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPF--CRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccC--CCCcc
Confidence 357999986643 24556699999999999999999999965 76653
No 314
>PHA00673 acetyltransferase domain containing protein
Probab=34.81 E-value=62 Score=33.48 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=36.3
Q ss_pred eeEEEEccCcccCCchhHHHHHHHhc---ccCcEEEEeccCCCCChH
Q 001094 633 WFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAID 676 (1159)
Q Consensus 633 w~rVIlDEAH~IKN~~S~~~ral~~L---~a~~RwlLTGTPiqN~l~ 676 (1159)
.+-|.+++.|+=++-.+...+.+... ..-++|-+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 45799999999988888877776654 567899999999999865
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.79 E-value=2.1e+02 Score=34.24 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=35.4
Q ss_pred ceeEEEEccCcccCCchhHHH---HHHHhcc--cCcEEEEeccCCCCChHHHHhchhccc
Q 001094 632 GWFRVVLDEAQSIKNHRTQVA---RACWGLR--AKRRWCLSGTPIQNAIDDLYSYFRFLR 686 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~---ral~~L~--a~~RwlLTGTPiqN~l~DLyslL~fL~ 686 (1159)
..++||+|++.+.....-... +.+.... ....+.|++|-=++.+.+++.-+..+.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~ 313 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFS 313 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 357899999998753322222 2222222 246688999988888888776665554
No 316
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=33.64 E-value=69 Score=39.51 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHHhhh-----cCCCCccceeecCCCCchhHHHHHHHH
Q 001094 393 LLRHQRIALSWMVQKET-----SSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 393 L~phQ~~gv~wMl~~e~-----~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
.....++++.|.+.+-. ....++|.+|.--.|.|||+.+-|+..
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 44577888888887655 233567899999999999999877764
No 317
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.52 E-value=1.7e+02 Score=33.68 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=37.8
Q ss_pred EEEEeChhh----HHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC-hhhc-CCCCEEEechhhHh
Q 001094 506 TLVVCPTSV----LRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCEL-AKFDVVITTYSIVS 563 (1159)
Q Consensus 506 tLIV~P~sL----l~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~-~~~l-~~~DVVItTY~~l~ 563 (1159)
.+|+||..= ..|-..|+.+|. .++|.+..|....++ ..++ ....++|-|-..+-
T Consensus 156 ~~ilVPtrelALQtSqvc~~lskh~----~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIl 215 (459)
T KOG0326|consen 156 AIILVPTRELALQTSQVCKELSKHL----GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRIL 215 (459)
T ss_pred EEEEeecchhhHHHHHHHHHHhccc----CeEEEEecCCcccccceeeecCceEEEEcCChhHH
Confidence 799999762 478888999887 488888887665543 3333 24567787777664
No 318
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=33.18 E-value=2.2e+02 Score=37.25 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
..|-+-|+.|+.-++.. . +=.+|---.|.|||..+-+++.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s--~----~~~il~G~aGTGKTtll~~i~~ 390 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS--G----DIAVVVGRAGTGKSTMLKAARE 390 (744)
T ss_pred CCCCHHHHHHHHHHhcC--C----CEEEEEecCCCCHHHHHHHHHH
Confidence 56889999999988732 1 1257888899999987766653
No 319
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.86 E-value=16 Score=40.21 Aligned_cols=52 Identities=33% Similarity=0.767 Sum_probs=38.2
Q ss_pred ccccCCCCCC-----ccch-----hcccCccchhhhHHhhh-hcCCCCCCCccccccccccchhh
Q 001094 840 AICGICNDPP-----EDAV-----VSICGHVFCNQCICERL-TADDNQCPTRNCKIRLSLSSVFS 893 (1159)
Q Consensus 840 ~~C~iC~~~~-----~~~~-----i~~CgH~~C~~Ci~~~l-~~~~~~Cp~~~c~~~~~~~~vf~ 893 (1159)
..|.+|.... ++.+ -..|+|+|=.-||.-+- -+....||. |+.++..+++|+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPY--CKekVdl~rmfs 287 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPY--CKEKVDLKRMFS 287 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCch--HHHHhhHhhhcc
Confidence 4688886432 2222 35799999999998764 466788998 999888877774
No 320
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=32.56 E-value=1.8e+02 Score=37.21 Aligned_cols=77 Identities=10% Similarity=0.158 Sum_probs=55.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHh----hCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1078 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~----~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~V 1078 (1159)
.+.+++|-+.....+..+...++ ..|++...++|+++.++|...+....+ +++.|++.+....-..+.+.....|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEEEecHHHHhccccccccceE
Confidence 46788999888877776665554 458999999999999999999888876 6677888665444444555444444
Q ss_pred EE
Q 001094 1079 LL 1080 (1159)
Q Consensus 1079 I~ 1080 (1159)
|+
T Consensus 362 VI 363 (630)
T TIGR00643 362 II 363 (630)
T ss_pred EE
Confidence 33
No 321
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.51 E-value=35 Score=41.05 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhc-------cc-CcEEEEeccCCCCChHHHHhchhccc
Q 001094 617 DGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGL-------RA-KRRWCLSGTPIQNAIDDLYSYFRFLR 686 (1159)
Q Consensus 617 ~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L-------~a-~~RwlLTGTPiqN~l~DLyslL~fL~ 686 (1159)
|+.+++...+.-.--.|..+||||||. +|..+..+..| +. -+.+.+|+|-.-.++...|+-.-++.
T Consensus 144 DgmLlrEams~p~l~~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~ 217 (699)
T KOG0925|consen 144 DGMLLREAMSDPLLGRYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLA 217 (699)
T ss_pred chHHHHHHhhCcccccccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeee
Confidence 333444334434445799999999994 56666666554 22 25688999987777777776555553
No 322
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.38 E-value=6.3e+02 Score=32.69 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=32.7
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc---ccCcEEEEeccCCCCChHHHHhchhcccccCC
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L---~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~ 690 (1159)
.+.+|||||+|.+.. ......++.| ....+++|+.|=...-+.-+.+-+.-+...++
T Consensus 119 k~KVIIIDEad~Ls~--~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~L 178 (709)
T PRK08691 119 KYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM 178 (709)
T ss_pred CcEEEEEECccccCH--HHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCC
Confidence 467899999998853 2222333444 34567888777555555555554433333333
No 323
>PRK11054 helD DNA helicase IV; Provisional
Probab=30.73 E-value=81 Score=40.64 Aligned_cols=38 Identities=24% Similarity=0.066 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
.+|-+-|+.+|..-. ...++--..|.|||.++++-+++
T Consensus 195 ~~L~~~Q~~av~~~~---------~~~lV~agaGSGKT~vl~~r~ay 232 (684)
T PRK11054 195 SPLNPSQARAVVNGE---------DSLLVLAGAGSGKTSVLVARAGW 232 (684)
T ss_pred CCCCHHHHHHHhCCC---------CCeEEEEeCCCCHHHHHHHHHHH
Confidence 468999999996331 12344445899999999888765
No 324
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=30.45 E-value=1.8e+02 Score=25.17 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=38.6
Q ss_pred eEEEEcC-cHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee
Q 001094 1006 KAIVFSQ-WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062 (1159)
Q Consensus 1006 KvIIFSq-~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS 1062 (1159)
|+.||+. +=..-..+...|+..+++|..++-....+.++++.+.......+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 4566663 33456677788888999999888887777777777666543244455544
No 325
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=30.39 E-value=1.7e+02 Score=35.11 Aligned_cols=21 Identities=29% Similarity=0.115 Sum_probs=16.7
Q ss_pred cceeecCCCCchhHHHHHHHH
Q 001094 416 GGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~ 436 (1159)
+-+|--..|+|||..+-|+..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~ 158 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGN 158 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 347889999999988877653
No 326
>PHA03096 p28-like protein; Provisional
Probab=29.38 E-value=27 Score=39.74 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=27.1
Q ss_pred ccccCCCCCCcc--------chhcccCccchhhhHHhhhhcC
Q 001094 840 AICGICNDPPED--------AVVSICGHVFCNQCICERLTAD 873 (1159)
Q Consensus 840 ~~C~iC~~~~~~--------~~i~~CgH~~C~~Ci~~~l~~~ 873 (1159)
.+|+||++.... .+++.|.|.||..|+..|....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 789999975431 3577899999999999888754
No 327
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=29.33 E-value=1.3e+02 Score=38.57 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
...|++|+..+.-+..--... .++|+=-.+|.|||+..|+.++.
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~---~~~~iEapTGtGKTl~yL~~al~ 57 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGG---EGLLIEAPTGTGKTLAYLLPALA 57 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCC---CcEEEECCCCccHHHHHHHHHHH
Confidence 568999999888887443322 34788889999999999877765
No 328
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=29.04 E-value=1.9e+02 Score=35.33 Aligned_cols=21 Identities=29% Similarity=0.115 Sum_probs=16.7
Q ss_pred cceeecCCCCchhHHHHHHHH
Q 001094 416 GGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~ 436 (1159)
.-+|.-..|+|||.-+-|+..
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~ 170 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGN 170 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 457889999999988777653
No 329
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=28.89 E-value=23 Score=41.30 Aligned_cols=33 Identities=21% Similarity=0.612 Sum_probs=29.2
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTA 872 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~ 872 (1159)
-.|++|..-.++|+|.+|+|-+|..|....+..
T Consensus 5 lkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 5 LKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 369999999999999999999999999876643
No 330
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=27.91 E-value=36 Score=38.64 Aligned_cols=50 Identities=22% Similarity=0.601 Sum_probs=35.9
Q ss_pred hhccccccCCCCCCcc---chh-cccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 836 EASLAICGICNDPPED---AVV-SICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 836 e~~~~~C~iC~~~~~~---~~i-~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
|.....|+.|.+++.- .+. -+||..+|.-|+......=.+.||. |+....
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpa--crr~y~ 64 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPA--CRRKYD 64 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChH--hhhhcc
Confidence 3344569999988643 233 3699999999998776666678997 776544
No 331
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=27.64 E-value=1.4e+02 Score=35.28 Aligned_cols=43 Identities=28% Similarity=0.206 Sum_probs=29.9
Q ss_pred CcccceeEEEEccCcccC--CchhHHHHHHHhcc-cCcEEEEeccC
Q 001094 628 LAKVGWFRVVLDEAQSIK--NHRTQVARACWGLR-AKRRWCLSGTP 670 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IK--N~~S~~~ral~~L~-a~~RwlLTGTP 670 (1159)
|..-.-...|+|||-..+ +...+.+.....+. ....+++|||-
T Consensus 165 l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 165 LSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred ccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 333445679999998764 45677777777774 44667888884
No 332
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=26.95 E-value=4.8e+02 Score=31.74 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=16.4
Q ss_pred cceeecCCCCchhHHHHHHHH
Q 001094 416 GGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~ 436 (1159)
.-+|.-..|+|||--+-|+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~ 152 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHH
Confidence 467888999999987766653
No 333
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=26.88 E-value=32 Score=40.95 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=27.6
Q ss_pred ccCcEEEEeccCCCCChHHHHhchhcccccCC
Q 001094 659 RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 690 (1159)
Q Consensus 659 ~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~ 690 (1159)
..++..++|||||.|.+.++|++-++|.++-+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 34667899999999999999999999987643
No 334
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.52 E-value=1.6e+02 Score=26.72 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=29.1
Q ss_pred EEEEeChhh-HHHH-HHHHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechh
Q 001094 506 TLVVCPTSV-LRQW-AEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 560 (1159)
Q Consensus 506 tLIV~P~sL-l~QW-~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~ 560 (1159)
+|||||... ..+- ...++++++..+ +...+-+..-.. .....+|+||||-.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~-i~~~~~~~~~~~---~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELG-IEAEVEHTDLGS---AKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCC-CcEEEEEecccc---cCCCCCCEEEEchh
Confidence 799999974 3333 346777775332 222222221111 12568999999975
No 335
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=25.66 E-value=8.6 Score=50.61 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=57.5
Q ss_pred EEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCC
Q 001094 1007 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1086 (1159)
Q Consensus 1007 vIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WN 1086 (1159)
+++|+-...+...+...+. ..+.+...+...++.+|... +....+.+|.++..+...+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~~--------~~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFLV--------DHGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhhh--------hHHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 7889999999888888541 11222222223333333321 45578889999998899999999999
Q ss_pred cChhhHHhhhhcccCCC
Q 001094 1087 PTTEDQAIDRAHRIGQT 1103 (1159)
Q Consensus 1087 P~~e~QAigR~hRiGQt 1103 (1159)
| .+|+++|.|+++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999995
No 336
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=25.52 E-value=4.2e+02 Score=36.19 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=36.2
Q ss_pred CcEEEEeChhhH-----HHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhhHh
Q 001094 504 AGTLVVCPTSVL-----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 563 (1159)
Q Consensus 504 ~~tLIV~P~sLl-----~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~l~ 563 (1159)
+...-++|...+ +-|..-|.+- ..+.+....| ....+...+.+.+|+|.|.+.+.
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~~----~G~~~~~l~g-e~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSKL----LGLRIVKLTG-ETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhccc----cCceEEecCC-ccccchHHhhhcceEEechhHHH
Confidence 346778898754 4455555432 3556555555 44556677789999999987774
No 337
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.17 E-value=16 Score=45.75 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=28.9
Q ss_pred cccCCCCCCccch---hcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 841 ICGICNDPPEDAV---VSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 841 ~C~iC~~~~~~~~---i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
.|++|....-+-+ -..|+|.||..|+..|- .-...||. |+..|..-
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs-R~aqTCPi--DR~EF~~v 173 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS-RCAQTCPV--DRGEFGEV 173 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhh-hhcccCch--hhhhhhee
Confidence 4666654333322 24699999999997654 34567886 76655543
No 338
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.01 E-value=33 Score=40.67 Aligned_cols=46 Identities=24% Similarity=0.711 Sum_probs=33.6
Q ss_pred ccccccCCCCCCccc---hh-cccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 838 SLAICGICNDPPEDA---VV-SICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~---~i-~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
.++.|++|.+.+... ++ +.|.|.|=..|+..|.. ..||+ ||.....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpv--cR~~q~p 223 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPV--CRYCQSP 223 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChh--hhhhcCc
Confidence 357899998665443 34 46999999999998764 56776 7766553
No 339
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=24.96 E-value=1.2e+02 Score=27.61 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=31.9
Q ss_pred cEEEEeChhh-HH-HHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhh
Q 001094 505 GTLVVCPTSV-LR-QWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 561 (1159)
Q Consensus 505 ~tLIV~P~sL-l~-QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~ 561 (1159)
.+|||||... .. .-...++++++.. .+.+.+-+.+...-.. ...++|+||||-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 3799999975 33 4567777777532 3333332222111111 35689999999654
No 340
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=24.61 E-value=48 Score=38.07 Aligned_cols=46 Identities=28% Similarity=0.751 Sum_probs=36.9
Q ss_pred hccccccCCCCCCccchhcc-cCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 837 ASLAICGICNDPPEDAVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~~i~~-CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
..+..||+|.++...|+... =||+.|..|-.+. .+.||. |+..+..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~--Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPT--CRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCc--ccccccc
Confidence 35678999999999887764 5899999998643 478998 8887774
No 341
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=23.71 E-value=4.4e+02 Score=37.80 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHH
Q 001094 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 390 ~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
...|-+-|+.|+..++.... +-.+|---.|.|||-++-+++.
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~d-----r~~~I~G~AGTGKTT~l~~v~~ 1006 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTD-----RFTVVQGYAGVGKTTQFRAVMS 1006 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCC-----cEEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999998884211 2356777789999987755553
No 342
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.66 E-value=71 Score=26.28 Aligned_cols=39 Identities=28% Similarity=0.703 Sum_probs=29.2
Q ss_pred cccCCCC--CCccchhcccC-----ccchhhhHHhhhhcC-CCCCCC
Q 001094 841 ICGICND--PPEDAVVSICG-----HVFCNQCICERLTAD-DNQCPT 879 (1159)
Q Consensus 841 ~C~iC~~--~~~~~~i~~Cg-----H~~C~~Ci~~~l~~~-~~~Cp~ 879 (1159)
.|.||.+ ..+++++.+|. |.+=..|+..|+... ...||.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~i 47 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEI 47 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCC
Confidence 4889986 45677889985 777788999999755 446764
No 343
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.63 E-value=7.8e+02 Score=32.62 Aligned_cols=40 Identities=23% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 395 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 395 phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
+|-+..+..++...+-. ..-||.-..|.|||..+..|...
T Consensus 21 e~v~~~L~~~i~~~ri~---Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 21 EHVTEPLSTALDSGRIN---HAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHHHHHHHHHHHhCCCC---ceEEEECCCCCCHHHHHHHHHHH
Confidence 45555666666543322 23478899999999988777644
No 344
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=22.67 E-value=71 Score=40.82 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=46.8
Q ss_pred HHHhcC-CCceEEEeeccccccccCccccCEEEE--------ec---------C-CCCcChhhHHhhhhcccCCCCcEEE
Q 001094 1048 KDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLL--------LD---------L-WWNPTTEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1048 ~~F~~d-~~~~VLLlStkagg~GLNL~~A~~VI~--------lD---------~-~WNP~~e~QAigR~hRiGQtk~V~V 1108 (1159)
+-|... .+.+..+++|.++-..|......+||= || - |-+-+.-.||.|||+|+|- =|-
T Consensus 621 RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GHc 697 (1172)
T KOG0926|consen 621 RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GHC 697 (1172)
T ss_pred hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Cce
Confidence 346554 367888999999999999988887762 22 2 3367777899999999884 567
Q ss_pred EEEEe
Q 001094 1109 LRLTV 1113 (1159)
Q Consensus 1109 ~rLv~ 1113 (1159)
|||+.
T Consensus 698 YRLYS 702 (1172)
T KOG0926|consen 698 YRLYS 702 (1172)
T ss_pred eehhh
Confidence 88864
No 345
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=22.60 E-value=3.9e+02 Score=34.10 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCCcEEEEEeCCCCCCChhhcCCCCEEEechhhHhh
Q 001094 529 KGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 564 (1159)
Q Consensus 529 ~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~l~~ 564 (1159)
...++.+.|+|+.+.. ..+++|+..|+.|-.
T Consensus 306 Gk~~~~CPYY~SR~av-----p~aqlV~LPYQ~LL~ 336 (821)
T KOG1133|consen 306 GKELRGCPYYASRRAV-----PQAQLVTLPYQLLLH 336 (821)
T ss_pred hhhcCCCCchhhhhcc-----ccccEEeccHHHHHh
Confidence 3478889999986654 468999999999964
No 346
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.59 E-value=2.4e+02 Score=28.93 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=41.3
Q ss_pred eEEEEcCc-------HHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhc----CCCceEEEee
Q 001094 1006 KAIVFSQW-------TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT----LPEVSVMIMS 1062 (1159)
Q Consensus 1006 KvIIFSq~-------t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~----d~~~~VLLlS 1062 (1159)
||+||+.. -..-..+..+|+..++.|..+|=+|..+.++++.+.... ..-++|+|-.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G 68 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDG 68 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECC
Confidence 57788776 244566788889999999999999998888887766543 2335566644
No 347
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=22.42 E-value=1.8e+02 Score=25.48 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=30.9
Q ss_pred EEEEeChhhHH--HHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhh
Q 001094 506 TLVVCPTSVLR--QWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 561 (1159)
Q Consensus 506 tLIV~P~sLl~--QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~ 561 (1159)
+|+|||...-. .-...+++.++..+-...+-+.+.... ....++|+||||-..
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh---hhcCCccEEEECCcc
Confidence 68999998532 234667777654332222222222211 456789999999753
No 348
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=2.6e+02 Score=34.45 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=76.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccc-cccCccccCEEEEec
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS-LGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg-~GLNL~~A~~VI~lD 1082 (1159)
..-+|||-..---.-.|..++++.++.|+.+.--++..+-.++-.-|.. +...|||.+-++-= .--.+.+...||+|.
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~q-gr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQ-GRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHh-cCceEEEEehhhhhhhhheecceeeEEEec
Confidence 3456666544333445778888889999988888888888888888988 78899999866632 234567889999999
Q ss_pred CCCCcChhhHH---hhhhcccCCCC--cEEEEEEEeC
Q 001094 1083 LWWNPTTEDQA---IDRAHRIGQTR--PVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~~WNP~~e~QA---igR~hRiGQtk--~V~V~rLv~~ 1114 (1159)
||-||.-..-- ++|.--.|.+- .-+|.-|+++
T Consensus 631 pP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 631 PPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred CCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 99999755433 34444445432 2455555554
No 349
>PRK08727 hypothetical protein; Validated
Probab=22.09 E-value=3.6e+02 Score=29.65 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=15.6
Q ss_pred ceeecCCCCchhHHHHHHHH
Q 001094 417 GILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 417 GILADemGLGKTlqaIAlI~ 436 (1159)
-+|.-..|.|||--+-|+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47888899999977766653
No 350
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=21.89 E-value=3.4e+02 Score=34.53 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=23.5
Q ss_pred eeEEEEccCcccCCchhH---HHHHHHhc-ccCcEEEEeccC
Q 001094 633 WFRVVLDEAQSIKNHRTQ---VARACWGL-RAKRRWCLSGTP 670 (1159)
Q Consensus 633 w~rVIlDEAH~IKN~~S~---~~ral~~L-~a~~RwlLTGTP 670 (1159)
.++||||+.|.+.+.... .+..+..+ .....+++|+.=
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 368999999999875432 22333333 334567777763
No 351
>PRK14974 cell division protein FtsY; Provisional
Probab=21.88 E-value=4.5e+02 Score=30.85 Aligned_cols=45 Identities=9% Similarity=0.060 Sum_probs=25.7
Q ss_pred eeEEEEccCcccCCchhHHHHHHHhc----cc-CcEEEEeccCCCCChHHH
Q 001094 633 WFRVVLDEAQSIKNHRTQVARACWGL----RA-KRRWCLSGTPIQNAIDDL 678 (1159)
Q Consensus 633 w~rVIlDEAH~IKN~~S~~~ral~~L----~a-~~RwlLTGTPiqN~l~DL 678 (1159)
.++||+|.|++..+..... ..+..+ .. ...+++++|.-++.+...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm-~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLM-DELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCEEEEECCCccCCcHHHH-HHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 4689999999987544332 222222 23 334667777654444333
No 352
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=21.85 E-value=3.7e+02 Score=36.04 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=59.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh----CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1078 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~----~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~V 1078 (1159)
.+.+++|.+..+..+......+.. .+++...+.|.++..++.+.++.+.. +.+.|++.+.......+.+..-..|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dIVIGTp~ll~~~v~f~~L~ll 577 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDILIGTHKLLQKDVKFKDLGLL 577 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceEEEchHHHhhCCCCcccCCEE
Confidence 457899999999988887776654 46778889999999999999998887 6788888776555555666655555
Q ss_pred EE
Q 001094 1079 LL 1080 (1159)
Q Consensus 1079 I~ 1080 (1159)
|+
T Consensus 578 VI 579 (926)
T TIGR00580 578 II 579 (926)
T ss_pred Ee
Confidence 54
No 353
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=21.83 E-value=51 Score=38.26 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=29.2
Q ss_pred eEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCCh
Q 001094 634 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 675 (1159)
Q Consensus 634 ~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l 675 (1159)
..||+||||+ ..--+.-..+-+|-...+..+||.+.|=.+
T Consensus 245 AfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 4799999997 222333444557788889999999988653
No 354
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=21.28 E-value=3.6e+02 Score=36.38 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=29.4
Q ss_pred eEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEeccCCCCChHH
Q 001094 634 FRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDD 677 (1159)
Q Consensus 634 ~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTGTPiqN~l~D 677 (1159)
++||||||-.+... ...+.+... .+..+++|.|=|-|-..-+
T Consensus 435 ~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV~ 477 (988)
T PRK13889 435 DVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAIE 477 (988)
T ss_pred cEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCCC
Confidence 58999999998643 333444333 6778999999988765433
No 355
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=20.71 E-value=6.8e+02 Score=30.92 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=30.8
Q ss_pred ccceeEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEeccCCCCChHHHHhchhccccc
Q 001094 630 KVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFLRYD 688 (1159)
Q Consensus 630 ~i~w~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTGTPiqN~l~DLyslL~fL~~~ 688 (1159)
+--+++|.+||+|-+- ....+.|..+ +.+.|+.--+ +||.++..+=++.
T Consensus 293 ~~~yD~ilIDE~QDFP---~~F~~Lcf~~tkd~KrlvyAy-------DelQnls~~~m~p 342 (660)
T COG3972 293 KKAYDYILIDESQDFP---QSFIDLCFMVTKDKKRLVYAY-------DELQNLSNVKMRP 342 (660)
T ss_pred cccccEEEecccccCC---HHHHHHHHHHhcCcceEEEeh-------HhhhcccccCCCC
Confidence 3457899999999874 4456666655 4445555443 5666666555443
No 356
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=20.60 E-value=1.4e+02 Score=26.74 Aligned_cols=53 Identities=21% Similarity=0.460 Sum_probs=31.3
Q ss_pred cEEEEeChhhH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhh
Q 001094 505 GTLVVCPTSVL--RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 561 (1159)
Q Consensus 505 ~tLIV~P~sLl--~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~ 561 (1159)
.+||||+...- .--+..++++++. +.++........ ......++|+||||-..
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~---~~~v~~~~~~~~-~~~~~~~~DlIitT~~l 56 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPE---IEIIDVISLREL-EEVDLDDYDLIISTVPL 56 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCC---ceEEEEEeHHHH-hhCcccCCCEEEEcccc
Confidence 37999999743 3456778888863 333222221111 11135689999999753
No 357
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.47 E-value=4e+02 Score=32.70 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHh--hhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 395 RHQRIALSWMVQK--ETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 395 phQ~~gv~wMl~~--e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
|+|+..+..++.- ..+...-+-++|.=.=|=|||..+-+++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly 45 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALY 45 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHH
Confidence 6788777766632 111111133555556688999877665544
No 358
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.31 E-value=3.7e+02 Score=34.61 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=50.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC-C-CcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS-S-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAA 1066 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~-g-i~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkag 1066 (1159)
.|..+||...-......+...|+.. | ..+..|++.++..+|.+.-.+... ++.+|+|.+ +++
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~IViGt-RSA 250 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARVVVGT-RSA 250 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcEEEEc-cee
Confidence 5778999888888888888888753 4 678999999999999999888876 778887755 443
No 359
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=20.10 E-value=4.9e+02 Score=34.59 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHH
Q 001094 400 ALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435 (1159)
Q Consensus 400 gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI 435 (1159)
-+.+|++..... ...+-||-=+.|.|||..+=++.
T Consensus 195 ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 195 EIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred HHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHH
Confidence 355665422221 12457999999999998775554
Done!