Query 001094
Match_columns 1159
No_of_seqs 341 out of 2282
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 4.3E-77 1.5E-81 761.3 20.3 608 246-1158 96-731 (800)
2 1z3i_X Similar to RAD54-like; 100.0 2.2E-74 7.7E-79 719.3 32.8 495 388-1159 51-570 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.3E-70 4.3E-75 667.1 34.3 460 388-1159 33-495 (500)
4 3dmq_A RNA polymerase-associat 100.0 8.1E-48 2.8E-52 498.7 21.3 424 389-1132 150-632 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 6E-42 2.1E-46 409.2 29.0 464 391-1133 8-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 2.4E-41 8.1E-46 377.4 22.2 253 723-1159 13-266 (271)
7 2fwr_A DNA repair protein RAD2 100.0 3.6E-37 1.2E-41 370.7 16.9 123 1003-1132 348-471 (472)
8 4a2w_A RIG-I, retinoic acid in 100.0 9.6E-33 3.3E-37 357.2 27.5 129 1003-1137 630-770 (936)
9 3tbk_A RIG-I helicase domain; 100.0 2.2E-32 7.4E-37 334.1 28.9 129 1003-1137 388-528 (555)
10 4a2p_A RIG-I, retinoic acid in 100.0 3E-32 1E-36 333.4 29.6 129 1003-1137 389-529 (556)
11 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-31 6.1E-36 341.2 32.4 129 1003-1137 630-770 (797)
12 2oca_A DAR protein, ATP-depend 100.0 4.9E-29 1.7E-33 302.8 30.3 113 1003-1117 347-460 (510)
13 2ykg_A Probable ATP-dependent 100.0 1.3E-28 4.5E-33 310.2 33.3 113 1003-1120 397-521 (696)
14 4gl2_A Interferon-induced heli 100.0 5.6E-29 1.9E-33 313.8 25.6 128 1004-1137 400-541 (699)
15 3hgt_A HDA1 complex subunit 3; 99.9 5.4E-27 1.9E-31 262.2 23.3 219 739-1126 19-248 (328)
16 3h1t_A Type I site-specific re 99.9 7.8E-27 2.7E-31 288.7 26.0 109 1003-1112 438-558 (590)
17 1xti_A Probable ATP-dependent 99.9 1.4E-25 4.8E-30 261.9 33.0 109 1003-1115 249-357 (391)
18 1hv8_A Putative ATP-dependent 99.9 2.6E-25 8.7E-30 256.7 26.7 111 1003-1117 237-347 (367)
19 2z0m_A 337AA long hypothetical 99.9 2.1E-25 7.3E-30 254.5 20.4 116 1003-1125 219-334 (337)
20 2j0s_A ATP-dependent RNA helic 99.9 3E-24 1E-28 252.8 30.4 110 1003-1116 275-384 (410)
21 1s2m_A Putative ATP-dependent 99.9 3.2E-24 1.1E-28 251.5 28.1 110 1003-1116 257-366 (400)
22 3pey_A ATP-dependent RNA helic 99.9 2.1E-23 7.1E-28 243.2 30.8 108 1003-1114 242-355 (395)
23 3eiq_A Eukaryotic initiation f 99.9 5.5E-24 1.9E-28 250.3 22.6 109 1003-1115 279-387 (414)
24 1fuu_A Yeast initiation factor 99.9 2.7E-25 9.3E-30 259.5 11.0 109 1003-1115 258-366 (394)
25 3fht_A ATP-dependent RNA helic 99.9 8.9E-22 3E-26 231.1 34.2 108 1003-1114 265-378 (412)
26 2db3_A ATP-dependent RNA helic 99.9 7.2E-22 2.5E-26 235.2 29.4 106 1005-1114 301-406 (434)
27 2i4i_A ATP-dependent RNA helic 99.9 1.2E-21 4E-26 230.8 25.1 109 1003-1115 275-383 (417)
28 1oyw_A RECQ helicase, ATP-depe 99.9 5.3E-21 1.8E-25 232.7 24.8 104 1003-1108 235-338 (523)
29 2eyq_A TRCF, transcription-rep 99.9 8E-21 2.7E-25 249.6 25.0 109 1003-1115 811-922 (1151)
30 3oiy_A Reverse gyrase helicase 99.9 3.8E-20 1.3E-24 218.5 25.2 102 1004-1112 252-362 (414)
31 2v1x_A ATP-dependent DNA helic 99.8 4.9E-20 1.7E-24 226.9 24.6 105 1003-1109 266-370 (591)
32 3fho_A ATP-dependent RNA helic 99.8 3.7E-21 1.3E-25 233.6 12.9 108 1003-1114 356-469 (508)
33 3fmp_B ATP-dependent RNA helic 99.8 3E-20 1E-24 223.8 17.2 102 1003-1106 332-439 (479)
34 2xgj_A ATP-dependent RNA helic 99.8 1.3E-18 4.3E-23 225.6 32.9 117 1003-1121 342-505 (1010)
35 3sqw_A ATP-dependent RNA helic 99.8 1.2E-19 4E-24 223.9 20.7 109 1003-1115 287-398 (579)
36 3i5x_A ATP-dependent RNA helic 99.8 2.6E-19 8.8E-24 219.9 20.6 109 1003-1115 338-449 (563)
37 1gm5_A RECG; helicase, replica 99.8 9.3E-20 3.2E-24 229.4 13.2 90 1017-1108 599-692 (780)
38 3l9o_A ATP-dependent RNA helic 99.8 4E-18 1.4E-22 222.8 21.2 119 1003-1123 440-605 (1108)
39 2p6r_A Afuhel308 helicase; pro 99.7 8.7E-17 3E-21 202.8 24.8 115 1003-1119 241-392 (702)
40 4a4z_A Antiviral helicase SKI2 99.7 5.5E-16 1.9E-20 200.9 31.7 117 1003-1122 335-499 (997)
41 2va8_A SSO2462, SKI2-type heli 99.7 3.3E-16 1.1E-20 198.0 27.9 112 1003-1116 251-409 (715)
42 2zj8_A DNA helicase, putative 99.7 1E-16 3.5E-21 202.7 22.8 114 1004-1119 237-391 (720)
43 1rif_A DAR protein, DNA helica 99.7 5.6E-17 1.9E-21 181.6 13.2 165 391-687 112-278 (282)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 3.6E-15 1.2E-19 192.5 26.0 107 1003-1112 536-706 (1038)
45 4ddu_A Reverse gyrase; topoiso 99.6 2E-14 6.8E-19 188.0 28.8 75 1004-1085 309-388 (1104)
46 1t5i_A C_terminal domain of A 99.6 1.8E-15 6.1E-20 156.9 14.1 108 1003-1114 30-137 (172)
47 2hjv_A ATP-dependent RNA helic 99.6 2E-15 6.9E-20 155.0 14.1 109 1003-1115 34-142 (163)
48 2jgn_A DBX, DDX3, ATP-dependen 99.6 1.6E-15 5.4E-20 159.3 10.8 109 1003-1115 45-153 (185)
49 1gku_B Reverse gyrase, TOP-RG; 99.6 2.4E-14 8.3E-19 187.1 22.7 74 1004-1084 275-352 (1054)
50 1fuk_A Eukaryotic initiation f 99.6 9.3E-15 3.2E-19 150.3 15.0 111 1003-1117 29-139 (165)
51 2p6n_A ATP-dependent RNA helic 99.6 1.4E-15 4.8E-20 160.5 8.7 108 1004-1115 54-161 (191)
52 2fz4_A DNA repair protein RAD2 99.6 8.8E-15 3E-19 159.7 14.9 141 389-674 90-232 (237)
53 2rb4_A ATP-dependent RNA helic 99.5 4.5E-14 1.5E-18 146.6 14.4 110 1003-1116 33-148 (175)
54 2yjt_D ATP-dependent RNA helic 99.2 1.7E-15 5.7E-20 156.7 0.0 104 1003-1108 29-132 (170)
55 3eaq_A Heat resistant RNA depe 99.5 2E-13 6.7E-18 146.5 13.7 109 1003-1115 30-138 (212)
56 2v6i_A RNA helicase; membrane, 99.4 5.2E-13 1.8E-17 158.6 14.9 94 1004-1104 171-281 (431)
57 2jlq_A Serine protease subunit 99.4 2.5E-12 8.6E-17 153.6 16.4 95 1004-1105 188-302 (451)
58 3b6e_A Interferon-induced heli 99.4 1.7E-12 5.8E-17 138.2 12.9 112 390-565 31-146 (216)
59 3rc3_A ATP-dependent RNA helic 99.4 1.6E-11 5.6E-16 152.4 23.6 106 1007-1114 323-444 (677)
60 1t6n_A Probable ATP-dependent 99.4 2.6E-12 8.8E-17 137.8 14.2 164 392-678 36-207 (220)
61 3i32_A Heat resistant RNA depe 99.4 3.9E-12 1.3E-16 143.4 15.2 110 1003-1116 27-136 (300)
62 2gxq_A Heat resistant RNA depe 99.3 3.7E-12 1.3E-16 135.0 13.2 164 392-678 23-192 (207)
63 2oxc_A Probable ATP-dependent 99.3 5.8E-12 2E-16 136.4 14.5 157 392-670 46-208 (230)
64 1yks_A Genome polyprotein [con 99.3 1.2E-11 4.1E-16 147.2 17.4 95 1003-1104 176-289 (440)
65 1qde_A EIF4A, translation init 99.3 1.2E-11 4.1E-16 132.9 15.5 157 392-671 36-197 (224)
66 1vec_A ATP-dependent RNA helic 99.3 8.9E-12 3E-16 132.0 14.3 158 392-671 25-188 (206)
67 2xau_A PRE-mRNA-splicing facto 99.3 5E-12 1.7E-16 160.0 13.0 111 1003-1117 302-445 (773)
68 2pl3_A Probable ATP-dependent 99.3 5.4E-12 1.9E-16 136.9 10.9 162 392-671 47-213 (236)
69 2wv9_A Flavivirin protease NS2 99.3 8.5E-12 2.9E-16 155.3 14.0 95 1003-1104 409-523 (673)
70 2z83_A Helicase/nucleoside tri 99.3 4.2E-12 1.4E-16 152.0 10.8 104 1004-1115 190-313 (459)
71 1q0u_A Bstdead; DEAD protein, 99.3 1.3E-11 4.3E-16 132.5 12.4 164 392-678 26-198 (219)
72 3o8b_A HCV NS3 protease/helica 99.3 2.7E-11 9.1E-16 149.1 15.6 101 1003-1117 395-516 (666)
73 2whx_A Serine protease/ntpase/ 99.2 5.7E-11 2E-15 146.8 17.4 102 1004-1113 355-476 (618)
74 4f92_B U5 small nuclear ribonu 99.2 3.7E-10 1.3E-14 153.2 25.5 84 1030-1115 1215-1308(1724)
75 3bor_A Human initiation factor 99.2 5.2E-11 1.8E-15 129.5 13.0 157 392-671 52-215 (237)
76 1wrb_A DJVLGB; RNA helicase, D 99.2 6E-11 2E-15 130.2 13.4 116 392-564 45-163 (253)
77 1tf5_A Preprotein translocase 99.2 7.7E-10 2.6E-14 137.5 24.0 98 1003-1104 431-536 (844)
78 3ber_A Probable ATP-dependent 99.2 4.6E-11 1.6E-15 131.1 11.6 158 392-671 65-228 (249)
79 2fsf_A Preprotein translocase 99.2 6.9E-10 2.4E-14 137.6 22.2 99 1003-1105 440-575 (853)
80 1nkt_A Preprotein translocase 99.2 7.8E-09 2.7E-13 128.5 30.7 98 1003-1104 459-608 (922)
81 4f92_B U5 small nuclear ribonu 99.1 2.9E-09 1E-13 144.4 24.9 87 1030-1118 380-476 (1724)
82 3iuy_A Probable ATP-dependent 99.1 9.4E-10 3.2E-14 118.6 14.8 161 392-670 42-208 (228)
83 3dkp_A Probable ATP-dependent 99.1 1.1E-09 3.7E-14 119.4 14.5 108 392-564 51-162 (245)
84 3jux_A Protein translocase sub 99.0 3.3E-08 1.1E-12 120.4 28.0 99 1003-1105 473-579 (822)
85 3ly5_A ATP-dependent RNA helic 98.9 1.9E-09 6.5E-14 119.2 9.3 162 392-671 76-243 (262)
86 3fe2_A Probable ATP-dependent 98.9 4.2E-09 1.4E-13 114.7 10.4 161 392-670 51-217 (242)
87 1c4o_A DNA nucleotide excision 98.8 3.5E-08 1.2E-12 123.1 15.3 109 1003-1116 438-551 (664)
88 2d7d_A Uvrabc system protein B 98.8 5.6E-08 1.9E-12 121.2 15.9 110 1003-1117 444-558 (661)
89 3fmo_B ATP-dependent RNA helic 98.7 9.7E-08 3.3E-12 107.6 16.1 109 392-564 114-223 (300)
90 2ipc_A Preprotein translocase 98.1 5.4E-05 1.8E-09 94.3 18.0 55 505-563 122-180 (997)
91 2ecy_A TNF receptor-associated 97.9 5.1E-06 1.7E-10 71.3 3.1 52 839-892 15-66 (66)
92 2vl7_A XPD; helicase, unknown 97.8 2.7E-05 9.3E-10 94.8 8.8 79 1003-1088 383-466 (540)
93 3crv_A XPD/RAD3 related DNA he 97.8 5.7E-05 2E-09 92.2 11.3 75 1003-1085 392-473 (551)
94 3llm_A ATP-dependent RNA helic 97.8 6.6E-05 2.3E-09 81.1 10.4 39 391-436 60-98 (235)
95 1t1h_A Gspef-atpub14, armadill 97.8 1.4E-05 4.6E-10 71.0 3.7 48 839-888 8-55 (78)
96 2yu4_A E3 SUMO-protein ligase 97.6 1.3E-05 4.3E-10 74.2 1.7 52 839-890 7-65 (94)
97 3lrq_A E3 ubiquitin-protein li 97.6 2.4E-05 8.2E-10 73.1 3.4 50 839-890 22-72 (100)
98 2ysl_A Tripartite motif-contai 97.6 3E-05 1E-09 67.7 3.6 49 839-889 20-70 (73)
99 2kre_A Ubiquitin conjugation f 97.5 2.6E-05 8.8E-10 72.9 2.4 47 839-888 29-75 (100)
100 2kr4_A Ubiquitin conjugation f 97.5 2.5E-05 8.6E-10 70.7 2.1 48 839-889 14-61 (85)
101 2egp_A Tripartite motif-contai 97.5 3.1E-05 1.1E-09 68.7 2.5 50 839-890 12-67 (79)
102 3fl2_A E3 ubiquitin-protein li 97.5 4.2E-05 1.4E-09 74.3 3.4 47 840-888 53-99 (124)
103 2djb_A Polycomb group ring fin 97.5 5.3E-05 1.8E-09 66.1 3.6 49 839-890 15-64 (72)
104 2c2l_A CHIP, carboxy terminus 97.5 2.7E-05 9.2E-10 86.3 1.9 52 839-892 208-259 (281)
105 2yur_A Retinoblastoma-binding 97.5 6.1E-05 2.1E-09 66.2 3.7 46 839-886 15-62 (74)
106 1wgm_A Ubiquitin conjugation f 97.5 4E-05 1.4E-09 71.3 2.6 47 839-888 22-69 (98)
107 1z6u_A NP95-like ring finger p 97.4 5.6E-05 1.9E-09 76.0 3.5 49 839-889 78-126 (150)
108 2ecw_A Tripartite motif-contai 97.4 6E-05 2.1E-09 67.6 3.3 49 839-889 19-72 (85)
109 1g25_A CDK-activating kinase a 97.4 4.5E-05 1.6E-09 65.1 2.3 49 840-890 4-57 (65)
110 2d8t_A Dactylidin, ring finger 97.4 5.1E-05 1.8E-09 66.0 2.4 49 839-890 15-63 (71)
111 4ayc_A E3 ubiquitin-protein li 97.4 6.4E-05 2.2E-09 74.5 3.3 46 840-888 54-99 (138)
112 2csy_A Zinc finger protein 183 97.4 6.8E-05 2.3E-09 67.0 3.1 46 839-887 15-60 (81)
113 2ecv_A Tripartite motif-contai 97.4 8.6E-05 3E-09 66.6 3.7 50 839-890 19-73 (85)
114 2ysj_A Tripartite motif-contai 97.4 8.2E-05 2.8E-09 63.0 2.9 41 839-879 20-62 (63)
115 3hct_A TNF receptor-associated 97.4 5.1E-05 1.7E-09 73.1 1.8 52 839-892 18-69 (118)
116 2f42_A STIP1 homology and U-bo 97.3 6.3E-05 2.1E-09 77.4 2.5 49 839-889 106-154 (179)
117 1jm7_A BRCA1, breast cancer ty 97.3 0.00011 3.7E-09 69.8 4.0 48 839-888 21-70 (112)
118 2ct2_A Tripartite motif protei 97.3 9.5E-05 3.2E-09 66.9 3.4 49 839-889 15-69 (88)
119 1rmd_A RAG1; V(D)J recombinati 97.3 9.6E-05 3.3E-09 70.8 3.4 49 839-889 23-71 (116)
120 3ng2_A RNF4, snurf, ring finge 97.3 6.9E-05 2.4E-09 64.9 2.0 50 838-890 9-65 (71)
121 2xeu_A Ring finger protein 4; 97.3 6.4E-05 2.2E-09 63.6 1.7 49 839-890 3-58 (64)
122 2ecj_A Tripartite motif-contai 97.3 0.00013 4.6E-09 60.4 3.5 41 839-879 15-57 (58)
123 3l11_A E3 ubiquitin-protein li 97.3 8.3E-05 2.8E-09 71.2 2.3 47 840-888 16-62 (115)
124 2ea6_A Ring finger protein 4; 97.3 9.8E-05 3.3E-09 63.5 2.4 47 838-887 14-67 (69)
125 2ckl_B Ubiquitin ligase protei 97.3 0.00012 4.3E-09 74.7 3.5 47 840-888 55-102 (165)
126 3ztg_A E3 ubiquitin-protein li 97.3 9.1E-05 3.1E-09 67.8 2.2 46 839-886 13-60 (92)
127 3htk_C E3 SUMO-protein ligase 97.2 0.00011 3.6E-09 79.4 2.3 52 839-890 181-234 (267)
128 2y43_A E3 ubiquitin-protein li 97.2 0.0002 7E-09 66.5 3.6 47 839-888 22-69 (99)
129 2ecm_A Ring finger and CHY zin 97.2 0.00021 7.1E-09 58.6 3.2 46 838-886 4-53 (55)
130 1e4u_A Transcriptional repress 97.2 0.00027 9.3E-09 62.8 4.1 50 839-890 11-64 (78)
131 2ckl_A Polycomb group ring fin 97.1 0.00021 7.1E-09 67.6 3.5 47 839-888 15-62 (108)
132 1chc_A Equine herpes virus-1 r 97.1 0.0002 6.7E-09 61.6 2.9 47 838-887 4-51 (68)
133 2y1n_A E3 ubiquitin-protein li 97.1 0.00029 9.9E-09 80.7 4.7 52 838-891 331-382 (389)
134 1jm7_B BARD1, BRCA1-associated 97.1 0.00026 9E-09 67.9 3.5 44 839-887 22-66 (117)
135 1bor_A Transcription factor PM 97.0 0.00029 9.9E-09 58.3 2.5 45 838-888 5-49 (56)
136 2ecn_A Ring finger protein 141 96.9 0.00022 7.6E-09 61.6 1.5 45 839-887 15-59 (70)
137 2ect_A Ring finger protein 126 96.9 0.00045 1.5E-08 61.0 3.1 49 839-890 15-66 (78)
138 1iym_A EL5; ring-H2 finger, ub 96.9 0.00064 2.2E-08 55.6 3.8 45 839-886 5-53 (55)
139 1v87_A Deltex protein 2; ring- 96.9 0.00039 1.3E-08 66.2 2.7 47 840-888 26-94 (114)
140 3hcs_A TNF receptor-associated 96.9 0.00029 9.9E-09 72.3 1.8 53 839-893 18-70 (170)
141 3knv_A TNF receptor-associated 96.9 0.00022 7.6E-09 70.8 0.9 46 839-886 31-76 (141)
142 2kiz_A E3 ubiquitin-protein li 96.8 0.00074 2.5E-08 58.1 3.4 48 838-888 13-63 (69)
143 1x4j_A Ring finger protein 38; 96.7 0.00057 1.9E-08 60.0 1.9 48 838-888 22-72 (75)
144 2ep4_A Ring finger protein 24; 96.6 0.0009 3.1E-08 58.4 3.0 46 839-887 15-63 (74)
145 2l0b_A E3 ubiquitin-protein li 96.6 0.00077 2.6E-08 61.6 2.3 46 839-887 40-88 (91)
146 1wim_A KIAA0161 protein; ring 96.6 0.00083 2.8E-08 61.8 2.5 51 839-889 5-67 (94)
147 4ap4_A E3 ubiquitin ligase RNF 96.6 0.0007 2.4E-08 65.9 2.1 52 837-891 5-63 (133)
148 4ic3_A E3 ubiquitin-protein li 96.5 0.00093 3.2E-08 58.6 2.6 43 839-888 24-67 (74)
149 2ecg_A Baculoviral IAP repeat- 96.5 0.0014 4.7E-08 57.6 3.5 43 839-888 25-68 (75)
150 2bay_A PRE-mRNA splicing facto 96.5 0.001 3.6E-08 56.0 2.2 39 840-879 4-43 (61)
151 2vje_B MDM4 protein; proto-onc 96.3 0.002 7E-08 54.6 3.1 48 837-887 5-55 (63)
152 2vje_A E3 ubiquitin-protein li 96.2 0.0025 8.7E-08 54.1 3.0 47 838-887 7-56 (64)
153 4b3f_X DNA-binding protein smu 96.1 0.027 9.3E-07 69.8 13.4 44 388-437 185-228 (646)
154 2ecl_A Ring-box protein 2; RNF 95.9 0.0036 1.2E-07 55.8 3.1 47 839-888 15-76 (81)
155 2ea5_A Cell growth regulator w 95.9 0.0039 1.3E-07 53.7 2.9 45 837-888 13-58 (68)
156 2yho_A E3 ubiquitin-protein li 95.9 0.0032 1.1E-07 55.9 2.4 43 839-888 18-61 (79)
157 2gk6_A Regulator of nonsense t 95.4 0.078 2.7E-06 65.5 13.0 39 392-437 180-218 (624)
158 3dpl_R Ring-box protein 1; ubi 95.3 0.009 3.1E-07 56.2 3.4 46 839-887 37-100 (106)
159 4ap4_A E3 ubiquitin ligase RNF 95.2 0.0054 1.9E-07 59.5 1.6 52 837-891 70-128 (133)
160 3t6p_A Baculoviral IAP repeat- 94.9 0.0082 2.8E-07 68.3 2.2 42 839-887 295-337 (345)
161 2wjy_A Regulator of nonsense t 94.5 0.13 4.6E-06 65.0 12.0 40 391-437 355-394 (800)
162 2xzl_A ATP-dependent helicase 94.3 0.16 5.6E-06 64.3 12.1 52 1003-1063 674-729 (802)
163 2vl7_A XPD; helicase, unknown 93.8 0.11 3.9E-06 62.8 8.9 42 391-435 6-47 (540)
164 3vk6_A E3 ubiquitin-protein li 93.7 0.035 1.2E-06 50.7 3.1 46 841-888 3-49 (101)
165 3e1s_A Exodeoxyribonuclease V, 93.5 0.27 9.4E-06 59.9 11.7 41 631-673 278-318 (574)
166 4a0k_B E3 ubiquitin-protein li 93.1 0.016 5.6E-07 55.3 0.0 45 840-887 49-111 (117)
167 2o0j_A Terminase, DNA packagin 92.0 0.76 2.6E-05 53.0 12.0 42 389-437 160-201 (385)
168 2d8s_A Cellular modulator of i 91.4 0.1 3.6E-06 46.2 3.0 50 838-889 14-71 (80)
169 3cpe_A Terminase, DNA packagin 89.6 1.8 6.3E-05 52.7 12.9 45 628-673 269-316 (592)
170 1w36_D RECD, exodeoxyribonucle 88.8 1.2 3.9E-05 54.8 10.3 43 632-676 262-304 (608)
171 3upu_A ATP-dependent DNA helic 86.8 6.5 0.00022 46.2 14.9 44 392-437 25-68 (459)
172 4a15_A XPD helicase, ATP-depen 86.6 1.3 4.3E-05 54.5 8.8 100 1004-1108 448-579 (620)
173 4a15_A XPD helicase, ATP-depen 83.8 0.92 3.1E-05 55.8 5.7 85 392-540 3-88 (620)
174 3vkw_A Replicase large subunit 82.4 4 0.00014 47.8 10.0 40 631-673 233-272 (446)
175 1c4o_A DNA nucleotide excision 80.0 4 0.00014 50.5 9.5 78 391-537 7-85 (664)
176 2j9r_A Thymidine kinase; TK1, 77.6 5.7 0.00019 41.8 8.4 35 632-669 101-136 (214)
177 2d7d_A Uvrabc system protein B 74.0 8.4 0.00029 47.6 10.0 79 391-538 11-90 (661)
178 3k1l_B Fancl; UBC, ring, RWD, 70.6 1.1 3.9E-05 50.0 0.9 49 838-888 307-373 (381)
179 2b2y_C CHD-1, chromodomain-hel 64.6 1.2 4.1E-05 41.9 -0.4 40 238-277 76-115 (115)
180 3u61_B DNA polymerase accessor 62.5 42 0.0014 36.8 11.8 52 632-683 105-158 (324)
181 3syl_A Protein CBBX; photosynt 54.1 5 0.00017 44.0 2.3 21 416-436 69-89 (309)
182 1vyx_A ORF K3, K3RING; zinc-bi 53.1 7.9 0.00027 32.0 2.7 48 838-887 5-58 (60)
183 2jun_A Midline-1; B-BOX, TRIM, 50.1 7.1 0.00024 35.5 2.2 30 839-868 3-35 (101)
184 2orw_A Thymidine kinase; TMTK, 48.9 13 0.00043 37.9 4.2 35 632-669 76-111 (184)
185 3eie_A Vacuolar protein sortin 44.9 28 0.00095 38.5 6.5 22 415-436 52-73 (322)
186 2l82_A Designed protein OR32; 44.9 60 0.002 29.7 7.3 47 1006-1052 4-50 (162)
187 2ct0_A Non-SMC element 1 homol 43.0 19 0.00064 31.2 3.6 48 837-886 13-62 (74)
188 1l8q_A Chromosomal replication 42.2 86 0.0029 34.3 10.0 22 415-436 38-59 (324)
189 2b2y_A CHD-1, chromodomain-hel 42.2 0.26 9E-06 50.9 -9.8 90 238-327 76-169 (187)
190 3e2i_A Thymidine kinase; Zn-bi 40.9 61 0.0021 34.0 7.8 34 632-668 101-135 (219)
191 1gm5_A RECG; helicase, replica 40.0 75 0.0026 39.9 9.9 77 1003-1080 416-496 (780)
192 1u6t_A SH3 domain-binding glut 37.8 30 0.001 32.9 4.5 45 1007-1051 2-53 (121)
193 2z4s_A Chromosomal replication 35.8 1.7E+02 0.0058 33.8 11.6 21 415-435 131-151 (440)
194 3oiy_A Reverse gyrase helicase 33.9 1.4E+02 0.0047 33.7 10.3 77 1003-1080 63-145 (414)
195 2j48_A Two-component sensor ki 31.7 48 0.0016 29.2 4.8 27 1006-1032 3-29 (119)
196 3a10_A Response regulator; pho 30.1 1.3E+02 0.0045 26.4 7.6 26 1006-1031 3-28 (116)
197 3lfu_A DNA helicase II; SF1 he 29.6 70 0.0024 38.8 7.2 39 632-673 213-252 (647)
198 3crv_A XPD/RAD3 related DNA he 29.4 1.4E+02 0.0048 35.5 9.7 80 392-539 3-83 (551)
199 3i42_A Response regulator rece 28.5 51 0.0017 29.9 4.4 26 1005-1030 4-29 (127)
200 3eqz_A Response regulator; str 26.3 1.7E+02 0.006 26.3 7.9 25 1005-1029 4-28 (135)
201 1a5t_A Delta prime, HOLB; zinc 26.1 54 0.0018 36.4 4.8 45 393-437 3-47 (334)
202 3h5i_A Response regulator/sens 25.9 1.6E+02 0.0055 27.0 7.6 81 1003-1089 4-92 (140)
203 3ipz_A Monothiol glutaredoxin- 25.6 1E+02 0.0034 28.1 5.8 59 1003-1062 16-80 (109)
204 2r2a_A Uncharacterized protein 25.4 29 0.001 35.8 2.3 38 634-671 89-133 (199)
205 3cg4_A Response regulator rece 25.1 2.2E+02 0.0075 25.9 8.4 80 1003-1089 6-95 (142)
206 3zyw_A Glutaredoxin-3; metal b 22.8 1.2E+02 0.0042 27.8 5.8 59 1003-1062 14-78 (111)
207 2orv_A Thymidine kinase; TP4A 21.9 61 0.0021 34.4 3.9 34 632-669 90-124 (234)
208 2b8t_A Thymidine kinase; deoxy 21.9 47 0.0016 34.9 3.0 37 630-669 87-124 (223)
209 3grc_A Sensor protein, kinase; 21.0 1.8E+02 0.0061 26.6 6.8 63 1003-1072 5-68 (140)
210 3hdv_A Response regulator; PSI 20.7 2.8E+02 0.0097 24.9 8.2 57 1003-1065 6-62 (136)
211 3lte_A Response regulator; str 20.5 1.2E+02 0.0041 27.4 5.4 63 1003-1072 5-68 (132)
212 2cs3_A Protein C14ORF4, MY039 20.3 83 0.0028 27.4 3.6 40 840-879 16-63 (93)
213 2q5c_A NTRC family transcripti 20.2 2.1E+02 0.0071 29.2 7.5 92 1004-1102 4-95 (196)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-77 Score=761.31 Aligned_cols=608 Identities=24% Similarity=0.367 Sum_probs=436.5
Q ss_pred cccchhhhhhhhcccccccccc---cCCCccccccCCCCCCCCCCCCCCeEEEeccCCCC------CCcchhhccccccC
Q 001094 246 ELDGVKEDMEAEIKTRSMASHL---LKLSPESIQSNSSDCKSHVDDEPDICILEDISQPA------RSNQSLVLGKTLSM 316 (1159)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 316 (1159)
+++|+|+..++.++......+. +..+||+++...|+.+...+.-+++.++|+|=... ......++.||-+|
T Consensus 96 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L 175 (800)
T 3mwy_W 96 QVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRL 175 (800)
T ss_dssp SCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTS
T ss_pred hcchHHHHHHHHHHhhhHHHHHhcCCCCCHHHHHHHhhhhhhhccccccccceeEEEeecccccCCCCCceEEEEEecCC
Confidence 5788899999855544333333 23678888887776666555556677788872221 34456789999999
Q ss_pred ccccccccccccCCCccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhcCCCCCcccCCCCCCCCCCCcHH
Q 001094 317 NRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRH 396 (1159)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~p~~~l~~~L~ph 396 (1159)
++..|.|+...........+...|.........+.........+. .. .. -...|+......|+||
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~------------~~--~~-~~~~p~~~~~~~Lr~y 240 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRP------------RF--EK-LSVQPPFIKGGELRDF 240 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCC------------CC--CC-CSSCCTTCCSSCCCTH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCC------------cc--cc-cccCCCccCCCCcCHH
Confidence 999998865533221111111111111100000000000000000 00 01 1123444456789999
Q ss_pred HHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccccccccc
Q 001094 397 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQE 476 (1159)
Q Consensus 397 Q~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~ 476 (1159)
|++||.||+..... .+||||||+||||||+++|++|....
T Consensus 241 Q~egv~~l~~~~~~---~~~~ILademGlGKT~~ai~~i~~l~------------------------------------- 280 (800)
T 3mwy_W 241 QLTGINWMAFLWSK---GDNGILADEMGLGKTVQTVAFISWLI------------------------------------- 280 (800)
T ss_dssp HHHHHHHHHHHHTT---TCCEEECCCTTSSTTHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHhhc---CCCEEEEeCCCcchHHHHHHHHHHHH-------------------------------------
Confidence 99999999977653 37899999999999999999997531
Q ss_pred cccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh----------
Q 001094 477 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP---------- 546 (1159)
Q Consensus 477 ~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~---------- 546 (1159)
......+++|||||.+|+.||.+||.+|++ .+++++|+|....+..
T Consensus 281 ---------------------~~~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~ 336 (800)
T 3mwy_W 281 ---------------------FARRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSRDTIREYEFYTNP 336 (800)
T ss_dssp ---------------------HHHSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHHHHHHHHHSCSCC
T ss_pred ---------------------HhcCCCCCEEEEECchHHHHHHHHHHHHCC---CceEEEEeCCHHHHHHHHHHHhhccc
Confidence 011234579999999999999999999986 7999999998653311
Q ss_pred ----hhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccc
Q 001094 547 ----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 622 (1159)
Q Consensus 547 ----~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~ 622 (1159)
.....+|||||||+++..+.
T Consensus 337 ~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------------------- 360 (800)
T 3mwy_W 337 RAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------------------- 360 (800)
T ss_dssp -----CCCCCSEEEECTTHHHHTH--------------------------------------------------------
T ss_pred cccccccccCCEEEecHHHHHhhH--------------------------------------------------------
Confidence 24468999999999997531
Q ss_pred cccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhcc
Q 001094 623 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKV 702 (1159)
Q Consensus 623 ~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~~ 702 (1159)
..|..+.|++|||||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|.....|.....
T Consensus 361 ---~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~- 436 (800)
T 3mwy_W 361 ---AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ- 436 (800)
T ss_dssp ---HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-
T ss_pred ---HHHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc-
Confidence 1256678999999999999999999999999999999999999999999999999999999999987665542211
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 001094 703 PISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ 782 (1159)
Q Consensus 703 pi~~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~ 782 (1159)
..........|+.+++++|+||+|.++.. .||++.+.++.++|++.|+++|..+.......+.... ..
T Consensus 437 --~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-----~~ 504 (800)
T 3mwy_W 437 --DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-----KG 504 (800)
T ss_dssp --TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-------------
T ss_pred --chhHHHHHHHHHHHHhHHHhhhhHHhhhh-----ccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc-----cc
Confidence 11123457789999999999999999975 7999999999999999999999998664333222211 12
Q ss_pred cHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccch
Q 001094 783 NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 862 (1159)
Q Consensus 783 ~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C 862 (1159)
...+++..+++||++|+||.++........ ..+..
T Consensus 505 ~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~--------~~~~~------------------------------------- 539 (800)
T 3mwy_W 505 GHFSLLNIMNELKKASNHPYLFDNAEERVL--------QKFGD------------------------------------- 539 (800)
T ss_dssp --CTHHHHHHHHHHHHHCGGGSSSHHHHHC--------CCC---------------------------------------
T ss_pred chhhHHHHHHHHHHHhcChhhhcchHHHHH--------Hhccc-------------------------------------
Confidence 234678889999999999998854210000 00000
Q ss_pred hhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHH
Q 001094 863 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVL 942 (1159)
Q Consensus 863 ~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L 942 (1159)
. ......+ .......++|+..+.++|
T Consensus 540 -----------~----------~~~~~~~---------------------------------~~~l~~~s~K~~~L~~lL 565 (800)
T 3mwy_W 540 -----------G----------KMTRENV---------------------------------LRGLIMSSGKMVLLDQLL 565 (800)
T ss_dssp -----------------------CCSHHH---------------------------------HHHHHHTCHHHHHHHHHH
T ss_pred -----------c----------cccHHHH---------------------------------HHHhhhcChHHHHHHHHH
Confidence 0 0000000 000112488999999988
Q ss_pred HHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHH
Q 001094 943 QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEA 1022 (1159)
Q Consensus 943 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~ 1022 (1159)
..+. ..++|+||||||+.++++|+.
T Consensus 566 ~~~~-------------------------------------------------------~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 566 TRLK-------------------------------------------------------KDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp HHHT-------------------------------------------------------TTTCCEEEEESCHHHHHHHHH
T ss_pred HHHh-------------------------------------------------------hCCCeEEEEechHHHHHHHHH
Confidence 8763 268899999999999999999
Q ss_pred HHhhCCCcEEecCCCCCHHHHHHHHHHHhcC-CCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccC
Q 001094 1023 SLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1101 (1159)
Q Consensus 1023 ~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d-~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiG 1101 (1159)
+|...|+++.+++|+|+..+|++++++|++. ....|||+|+++||+||||+.|++||+||++|||..+.||+||+||+|
T Consensus 591 ~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 591 YLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670 (800)
T ss_dssp HHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSS
T ss_pred HHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcC
Confidence 9999999999999999999999999999984 355699999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCc----cccCCCHHHHHhhhc
Q 001094 1102 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG----QQTRLTVDDLNYLFM 1158 (1159)
Q Consensus 1102 Qtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~----~~~~lt~~dL~~Lf~ 1158 (1159)
|+++|+||||++++|+|++|++++.+|..+..++++.....+ ....++.+||..|+.
T Consensus 671 Q~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 671 QKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp CCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred CCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHH
Confidence 999999999999999999999999999998888886543322 234688999988863
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-74 Score=719.29 Aligned_cols=495 Identities=26% Similarity=0.385 Sum_probs=391.0
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcC--CCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccc
Q 001094 388 VLAVPLLRHQRIALSWMVQKETSS--LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 465 (1159)
Q Consensus 388 ~l~~~L~phQ~~gv~wMl~~e~~~--~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 465 (1159)
.+...|+|||++|+.||+....+. ...+||||||+||||||+++|++|......
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~------------------------ 106 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ------------------------ 106 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHC------------------------
T ss_pred hhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHh------------------------
Confidence 367789999999999999876432 234789999999999999999999763100
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCC
Q 001094 466 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 545 (1159)
Q Consensus 466 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~ 545 (1159)
. .......+++|||||.+|+.||.+||.+|++. .+.++.++|..+...
T Consensus 107 ----------~--------------------~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~ 154 (644)
T 1z3i_X 107 ----------S--------------------PDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEI 154 (644)
T ss_dssp ----------C--------------------TTSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCHHHH
T ss_pred ----------C--------------------ccccCCCCcEEEEecHHHHHHHHHHHHHHcCC--CeeEEEEeCCCHHHH
Confidence 0 00001235699999999999999999999864 466666665432211
Q ss_pred hh----------hcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCC
Q 001094 546 PC----------ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 615 (1159)
Q Consensus 546 ~~----------~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~ 615 (1159)
.. ....++||||||+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------------------------------------------------- 185 (644)
T 1z3i_X 155 DSKLVNFISQQGMRIPTPILIISYETFRLHA------------------------------------------------- 185 (644)
T ss_dssp HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH-------------------------------------------------
Confidence 00 0125899999999997532
Q ss_pred CCCcccccccCCCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHH
Q 001094 616 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 695 (1159)
Q Consensus 616 ~~~~~~~~~~~~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~ 695 (1159)
..+....|++||+||||+|||..++.++++..+++.+||+|||||++|++.|||++++||+|+++++...
T Consensus 186 ----------~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~ 255 (644)
T 1z3i_X 186 ----------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255 (644)
T ss_dssp ----------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHH
T ss_pred ----------HHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHH
Confidence 1255678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCc------------hhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHH
Q 001094 696 FCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 763 (1159)
Q Consensus 696 F~~~i~~pi~~~~------------~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l 763 (1159)
|.++|..|+..+. .....+|+.++.++|+||++.++.. .||++.+.++.|+|++.|+++|+.+
T Consensus 256 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 256 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp HHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhh-----hCCCceEEEEEeCCCHHHHHHHHHH
Confidence 9999988764321 2235678999999999999999875 7999999999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhcccccc
Q 001094 764 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICG 843 (1159)
Q Consensus 764 ~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~ 843 (1159)
....... ...........+|..+++||++|+||.++.... ....
T Consensus 331 ~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~--------------------------~~~~----- 374 (644)
T 1z3i_X 331 LKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKC--------------------------LTGE----- 374 (644)
T ss_dssp HHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHH--------------------------HHTC-----
T ss_pred HHHHHHH-----HHHhcCccchhHHHHHHHHHHHhCCHHHHHHHH--------------------------hccc-----
Confidence 6543211 011112245678899999999999998764200 0000
Q ss_pred CCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCC
Q 001094 844 ICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAP 923 (1159)
Q Consensus 844 iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1159)
+.... +. ...+..+..
T Consensus 375 ---~~~~~-------------~~-----------------------------------------~~~~~~~~~------- 390 (644)
T 1z3i_X 375 ---EGFDG-------------AL-----------------------------------------DLFPQNYST------- 390 (644)
T ss_dssp ---TTCTT-------------GG-----------------------------------------GTSCSSCCS-------
T ss_pred ---chhhh-------------HH-----------------------------------------hhccccccc-------
Confidence 00000 00 000000000
Q ss_pred cCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccC
Q 001094 924 SCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG 1003 (1159)
Q Consensus 924 ~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1003 (1159)
.......++|+..+..++..+.. ..
T Consensus 391 -~~~~~~~s~K~~~l~~ll~~~~~------------------------------------------------------~~ 415 (644)
T 1z3i_X 391 -KAVEPQLSGKMLVLDYILAMTRT------------------------------------------------------TT 415 (644)
T ss_dssp -SSCCGGGSHHHHHHHHHHHHHHH------------------------------------------------------HC
T ss_pred -cccCcccChHHHHHHHHHHHHhh------------------------------------------------------cC
Confidence 01112357888887777765411 25
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCC-ceEEEeeccccccccCccccCEEEEec
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~-~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
++|+||||+|+.++++|+..|...|+.+.+++|+|+.++|++++++|++++. ..|+|+|+++||+||||++|++||++|
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEEC
Confidence 7899999999999999999999999999999999999999999999998543 458999999999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccCCCHHHHHhhhcC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~~~~~lt~~dL~~Lf~~ 1159 (1159)
+||||+.+.||+||+||+||+++|+||+|++++|+||+|+++|..|+.+++.+++++.. ....++.+||+.||.+
T Consensus 496 ~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 496 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQD--VERHFSLGELRELFSL 570 (644)
T ss_dssp CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSS--CCCSSCHHHHHHHTCC
T ss_pred CCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999987543 3467999999999974
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.3e-70 Score=667.14 Aligned_cols=460 Identities=33% Similarity=0.517 Sum_probs=392.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccc
Q 001094 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQV 467 (1159)
Q Consensus 388 ~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 467 (1159)
.++..|+|||++|+.||....... +||||||+||+|||+++|+++....
T Consensus 33 ~~~~~L~~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~ai~~i~~~~---------------------------- 81 (500)
T 1z63_A 33 NIKANLRPYQIKGFSWMRFMNKLG---FGICLADDMGLGKTLQTIAVFSDAK---------------------------- 81 (500)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHTT---CCEEECCCTTSCHHHHHHHHHHHHH----------------------------
T ss_pred hhhccchHHHHHHHHHHHHHhhCC---CCEEEEeCCCCcHHHHHHHHHHHHH----------------------------
Confidence 478899999999999998766533 7899999999999999999986521
Q ss_pred ccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChh
Q 001094 468 NGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPC 547 (1159)
Q Consensus 468 ~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~ 547 (1159)
...+.+++|||||.+|+.||.+|+.+|++ .+++.+++|.... .
T Consensus 82 -------------------------------~~~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~---~ 124 (500)
T 1z63_A 82 -------------------------------KENELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK---I 124 (500)
T ss_dssp -------------------------------HTTCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS---C
T ss_pred -------------------------------hcCCCCCEEEEccHHHHHHHHHHHHHHCC---CceEEEEecCchh---c
Confidence 11234579999999999999999999986 6889999987632 3
Q ss_pred hcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCC
Q 001094 548 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627 (1159)
Q Consensus 548 ~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~ 627 (1159)
....+|||||||+++..+. .
T Consensus 125 ~~~~~~ivi~t~~~l~~~~------------------------------------------------------------~ 144 (500)
T 1z63_A 125 KLEDYDIILTTYAVLLRDT------------------------------------------------------------R 144 (500)
T ss_dssp CGGGSSEEEEEHHHHTTCH------------------------------------------------------------H
T ss_pred cccCCcEEEeeHHHHhccc------------------------------------------------------------h
Confidence 4567999999999996421 0
Q ss_pred CcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHHhccCCCCC
Q 001094 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 707 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~i~~pi~~~ 707 (1159)
+....|++||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||+|++++++..|...|..|+..+
T Consensus 145 l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~ 224 (500)
T 1z63_A 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG 224 (500)
T ss_dssp HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT
T ss_pred hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccc
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred chhhHHHHHHHHHHHHHHhcccc--ccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHH
Q 001094 708 PVKGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYV 785 (1159)
Q Consensus 708 ~~~~~~~L~~lL~~~mLRRtK~~--v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~ 785 (1159)
.......|+.++.++++||++.+ +. ..||++.+.++.++|++.|+++|+.+.......+ ..........
T Consensus 225 ~~~~~~~l~~~l~~~~lrr~k~~~~~~-----~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~~~~ 295 (500)
T 1z63_A 225 DNMAKEELKAIISPFILRRTKYDKAII-----NDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKG 295 (500)
T ss_dssp CHHHHHHHHHHHTTTEECCCTTCHHHH-----TTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHHHHH
T ss_pred cHHHHHHHHHHHhhHeeeecccccchh-----hcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHH----HhhhcccchH
Confidence 77778899999999999999976 33 2799999999999999999999998765432221 1112223456
Q ss_pred HHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhh
Q 001094 786 NILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQC 865 (1159)
Q Consensus 786 ~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~C 865 (1159)
.++..+++||++|+||.++....
T Consensus 296 ~~~~~l~~lr~~~~~p~l~~~~~--------------------------------------------------------- 318 (500)
T 1z63_A 296 MILSTLLKLKQIVDHPALLKGGE--------------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHTTCTHHHHCSC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCHHHhcCcc---------------------------------------------------------
Confidence 78889999999999997653100
Q ss_pred HHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHh
Q 001094 866 ICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSL 945 (1159)
Q Consensus 866 i~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l 945 (1159)
.....++|+..+.+++.++
T Consensus 319 -------------------------------------------------------------~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 319 -------------------------------------------------------------QSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp -------------------------------------------------------------CCSTTCHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------chhhcchhHHHHHHHHHHH
Confidence 0012478999999988775
Q ss_pred cCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHh
Q 001094 946 AKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLK 1025 (1159)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~ 1025 (1159)
.. .++|+|||++|+.+++.|+..|.
T Consensus 338 ~~-------------------------------------------------------~~~k~lvF~~~~~~~~~l~~~l~ 362 (500)
T 1z63_A 338 LD-------------------------------------------------------EGDKIAIFTQFVDMGKIIRNIIE 362 (500)
T ss_dssp HT-------------------------------------------------------TTCCEEEECSCHHHHHHHHHHHH
T ss_pred Hc-------------------------------------------------------cCCcEEEEEehHHHHHHHHHHHH
Confidence 32 67899999999999999999998
Q ss_pred hC-CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCC
Q 001094 1026 DS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1026 ~~-gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk 1104 (1159)
.. |+.+.+++|+++.++|++++++|+++++++|+|+|++++|+||||+.|++||++|++|||..+.||+||+||+||++
T Consensus 363 ~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~ 442 (500)
T 1z63_A 363 KELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTR 442 (500)
T ss_dssp HHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTS
T ss_pred HhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCC
Confidence 85 99999999999999999999999997788899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccCCCHHHHHhhhcC
Q 001094 1105 PVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159 (1159)
Q Consensus 1105 ~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg~~~~~~~~~~lt~~dL~~Lf~~ 1159 (1159)
+|+||+|++++|+|++|++++..|+.+++.++++++ .....++.+||+.||++
T Consensus 443 ~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 443 NVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp CEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTT--GGGGSSCHHHHHHHHSC
T ss_pred eeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCc--chhccCCHHHHHHHhcc
Confidence 999999999999999999999999999999998754 34678999999999974
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=8.1e-48 Score=498.67 Aligned_cols=424 Identities=19% Similarity=0.273 Sum_probs=314.0
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccc
Q 001094 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 468 (1159)
Q Consensus 389 l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 468 (1159)
..+.|+|||+.|+.||+.+. ..|+||||+||+|||+++++++....
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~----------------------------- 195 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQL----------------------------- 195 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCcHHHHHHHHHHHHhc-----CCCEEEECCCCCcHHHHHHHHHHHHH-----------------------------
Confidence 45789999999999999743 36799999999999999999886521
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHhcCCCCCcEEEEEeCCCCC----C
Q 001094 469 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 544 (1159)
Q Consensus 469 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~----~ 544 (1159)
...+.+++|||||.+|+.||..|+.+++ .+++.+|+|.... .
T Consensus 196 ------------------------------~~g~~~rvLIVvP~sLl~Qw~~E~~~~f----~l~v~v~~~~~~~~~~~~ 241 (968)
T 3dmq_A 196 ------------------------------LSGAAERVLIIVPETLQHQWLVEMLRRF----NLRFALFDDERYAEAQHD 241 (968)
T ss_dssp ------------------------------HTSSCCCEEEECCTTTHHHHHHHHHHHS----CCCCEECCHHHHHHHHHT
T ss_pred ------------------------------HhCCCCeEEEEeCHHHHHHHHHHHHHHh----CCCEEEEccchhhhhhhh
Confidence 1123456999999999999999999888 3778888775421 1
Q ss_pred ChhhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccc
Q 001094 545 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 624 (1159)
Q Consensus 545 ~~~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~ 624 (1159)
....+..++|||+||+++.+....
T Consensus 242 ~~~~~~~~dIvI~T~~~L~~~~~~-------------------------------------------------------- 265 (968)
T 3dmq_A 242 AYNPFDTEQLVICSLDFARRSKQR-------------------------------------------------------- 265 (968)
T ss_dssp TCSSSTTCSEEEECHHHHHTSTTT--------------------------------------------------------
T ss_pred cccccccCCEEEEcHHHHhhCHHH--------------------------------------------------------
Confidence 123446789999999999753100
Q ss_pred cCCCcccceeEEEEccCcccCCchhH---HHHHHHhc--ccCcEEEEeccCCCCChHHHHhchhcccccCCCchHHHHHH
Q 001094 625 AGPLAKVGWFRVVLDEAQSIKNHRTQ---VARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 699 (1159)
Q Consensus 625 ~~~L~~i~w~rVIlDEAH~IKN~~S~---~~ral~~L--~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~~F~~~ 699 (1159)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++||.++.|.++..|...
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~ 345 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEE 345 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHH
T ss_pred HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHH
Confidence 01144568999999999999997654 47888888 78899999999999999999999999999999998888755
Q ss_pred hccCC----------CC-----------------------------CchhhHHHHHHHHHHH---------HHHhccccc
Q 001094 700 IKVPI----------SK-----------------------------NPVKGYKKLQAVLKTI---------MLRRTKGTL 731 (1159)
Q Consensus 700 i~~pi----------~~-----------------------------~~~~~~~~L~~lL~~~---------mLRRtK~~v 731 (1159)
+.... .. ...........++..+ ++|+++..+
T Consensus 346 ~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i 425 (968)
T 3dmq_A 346 QKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425 (968)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC
T ss_pred HHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh
Confidence 32100 00 0000011122333333 334444444
Q ss_pred cCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccccccccCcch
Q 001094 732 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 811 (1159)
Q Consensus 732 ~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~ 811 (1159)
..+|++....+.+++++.++..|..... ......... .. ..+.+|...
T Consensus 426 ------~~~p~r~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~---------~~-~~~l~pe~~------- 473 (968)
T 3dmq_A 426 ------KGFPKRELHTIKLPLPTQYQTAIKVSGI---------MGARKSAED---------RA-RDMLYPERI------- 473 (968)
T ss_dssp ------CCCCCCCCCEEEECCCHHHHHHHHHHHH---------TTCCSSGGG---------GT-HHHHCSGGG-------
T ss_pred ------cccChhheEeeecCCCHHHHHHHHHHhh---------hhhhhhhHH---------HH-hhhcChHHH-------
Confidence 3789999999999999999888864210 000000000 00 000001000
Q ss_pred hhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccch
Q 001094 812 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 812 ~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~v 891 (1159)
T Consensus 474 -------------------------------------------------------------------------------- 473 (968)
T 3dmq_A 474 -------------------------------------------------------------------------------- 473 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCC
Q 001094 892 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 971 (1159)
Q Consensus 892 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1159)
+.. +. . ........+.|+..+.+++...
T Consensus 474 ~~~------l~----~----------------~~~~~~~~~~K~~~L~~ll~~~-------------------------- 501 (968)
T 3dmq_A 474 YQE------FE----G----------------DNATWWNFDPRVEWLMGYLTSH-------------------------- 501 (968)
T ss_dssp TTT------TT----S----------------SSCCTTTTSHHHHHHHHHHHHT--------------------------
T ss_pred HHH------hh----h----------------hhhcccCccHHHHHHHHHHHhC--------------------------
Confidence 000 00 0 0011123478999999888652
Q ss_pred CCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhh-CCCcEEecCCCCCHHHHHHHHHHH
Q 001094 972 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDF 1050 (1159)
Q Consensus 972 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~-~gi~~~rldGs~s~~~R~~~v~~F 1050 (1159)
++.|+|||+++..+++.|...|.. .|+++..++|+|+..+|++++++|
T Consensus 502 -------------------------------~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 502 -------------------------------RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp -------------------------------SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred -------------------------------CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 678999999999999999999995 699999999999999999999999
Q ss_pred hcCC-CceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 001094 1051 NTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1129 (1159)
Q Consensus 1051 ~~d~-~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~ 1129 (1159)
++.. .+.||| +|+++++|+|++.|++||++|++|||..+.|++||++|+||++.|+||+++.++|+|++|++++.+|.
T Consensus 551 ~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 551 AEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp HSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred hCCCCcccEEE-ecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCC
Confidence 9853 377776 66999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q 001094 1130 EMV 1132 (1159)
Q Consensus 1130 ~l~ 1132 (1159)
.++
T Consensus 630 ~~~ 632 (968)
T 3dmq_A 630 DAF 632 (968)
T ss_dssp CCS
T ss_pred Cce
Confidence 653
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6e-42 Score=409.23 Aligned_cols=464 Identities=16% Similarity=0.174 Sum_probs=283.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
++|+|||++++.|++.. ++||+++||+|||+++++++....
T Consensus 8 ~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~------------------------------- 48 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRL------------------------------- 48 (494)
T ss_dssp HCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHH-------------------------------
T ss_pred CCccHHHHHHHHHHhhC--------CEEEEcCCCCCHHHHHHHHHHHHH-------------------------------
Confidence 57999999999999842 689999999999999999886521
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh-hh
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CE 548 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~ 548 (1159)
. .+.+++|||||. +|+.||.+|+.+++.. ...++.+++|....... ..
T Consensus 49 --------------------------~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 49 --------------------------T---KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp --------------------------H---HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHHH
T ss_pred --------------------------h---cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheEEeeCCcchhhhhhh
Confidence 0 123469999998 7999999999999742 24689999997654322 22
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
...++|+|+||+.+...+.. ..+
T Consensus 99 ~~~~~ivv~T~~~l~~~~~~---------------------------------------------------------~~~ 121 (494)
T 1wp9_A 99 WARAKVIVATPQTIENDLLA---------------------------------------------------------GRI 121 (494)
T ss_dssp HHHCSEEEECHHHHHHHHHT---------------------------------------------------------TSC
T ss_pred ccCCCEEEecHHHHHHHHhc---------------------------------------------------------CCc
Confidence 34789999999999754210 113
Q ss_pred cccceeEEEEccCcccCCchhHHH--HHHH-hcccCcEEEEeccCCCCChHHHHhchhcccccCCCchH---HHHHHhcc
Q 001094 629 AKVGWFRVVLDEAQSIKNHRTQVA--RACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK---SFCSMIKV 702 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~~S~~~--ral~-~L~a~~RwlLTGTPiqN~l~DLyslL~fL~~~p~~~~~---~F~~~i~~ 702 (1159)
....|++||+||||++++..+... +.+. .....++|+|||||. |+..+++.++.+|....+.... .+...+..
T Consensus 122 ~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 200 (494)
T 1wp9_A 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVK 200 (494)
T ss_dssp CTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCC
T ss_pred chhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcC
Confidence 345689999999999997533222 2222 236789999999999 7778888888777654332111 11111111
Q ss_pred CCC-----CCchhhHHHHHHHHHHHHHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHc
Q 001094 703 PIS-----KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAA 777 (1159)
Q Consensus 703 pi~-----~~~~~~~~~L~~lL~~~mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~ 777 (1159)
+.. .........+...+..++.+|.+.....| -+++.. ..++..+..... ..+......
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~-------~~~~~~~~~ 264 (494)
T 1wp9_A 201 GIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVLRAG-------QIINEEMAK 264 (494)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHHHHH-------HHHHHHHTT
T ss_pred CCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc----cccccC-----CCcchhHHHHHH-------HHHHHHhhc
Confidence 110 01123455667777777777776554432 333332 122222211111 111111111
Q ss_pred CC-ccccHHHHHHHHHHHHHhcCccccccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcc
Q 001094 778 GT-VKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSI 856 (1159)
Q Consensus 778 g~-~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~ 856 (1159)
+. ..-.....+..++.++.+..+.... .. .........+.... . .......
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~l~~~~--------~----------~~~~~~~--- 316 (494)
T 1wp9_A 265 GNHDLRGLLLYHAMALKLHHAIELLETQ---GL----SALRAYIKKLYEEA--------K----------AGSTKAS--- 316 (494)
T ss_dssp TCCSTTTHHHHHHHHHHHHHHHHHHHHT---CH----HHHHHHHHHHHHHH--------H----------TTCCHHH---
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhh---cH----HHHHHHHHHHHHhh--------c----------cccchhh---
Confidence 11 0111112222222332222111000 00 00000000000000 0 0000000
Q ss_pred cCccchhhhHHhhhhcCCCCCCCccccccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHH
Q 001094 857 CGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIK 936 (1159)
Q Consensus 857 CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~ 936 (1159)
...++..-+...+. . ... .......++|+.
T Consensus 317 -~~~~~~~~~~~~~~----------------------~--~~~-------------------------~~~~~~~~~k~~ 346 (494)
T 1wp9_A 317 -KEIFSDKRMKKAIS----------------------L--LVQ-------------------------AKEIGLDHPKMD 346 (494)
T ss_dssp -HHHHTSHHHHHHHH----------------------H--HHH-------------------------HHHHTCSCHHHH
T ss_pred -hhhhhhHHHHHHHH----------------------H--HHH-------------------------HHhcCCCChHHH
Confidence 00000000000000 0 000 000012478999
Q ss_pred HHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHH
Q 001094 937 AALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKM 1016 (1159)
Q Consensus 937 ~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~ 1016 (1159)
.+.++|..+.. ...+.|+|||++++.+
T Consensus 347 ~l~~~l~~~~~-----------------------------------------------------~~~~~k~lVF~~~~~~ 373 (494)
T 1wp9_A 347 KLKEIIREQLQ-----------------------------------------------------RKQNSKIIVFTNYRET 373 (494)
T ss_dssp HHHHHHHHHHH-----------------------------------------------------HCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHhc-----------------------------------------------------cCCCCeEEEEEccHHH
Confidence 99988877531 0257899999999999
Q ss_pred HHHHHHHHhhCCCcEEecCC--------CCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcC
Q 001094 1017 LDLLEASLKDSSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPT 1088 (1159)
Q Consensus 1017 LdlLe~~L~~~gi~~~rldG--------s~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~ 1088 (1159)
++.|+..|...|+.+.+++| +|+.++|++++++|++ +.+.||| +|+++++||||+.|++||++|++|||.
T Consensus 374 ~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~~ 451 (494)
T 1wp9_A 374 AKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-GEFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSAI 451 (494)
T ss_dssp HHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-TSCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHHH
T ss_pred HHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc-CCceEEE-ECCccccCCCchhCCEEEEeCCCCCHH
Confidence 99999999999999999999 9999999999999998 5677755 679999999999999999999999999
Q ss_pred hhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 001094 1089 TEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1133 (1159)
Q Consensus 1089 ~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~ 1133 (1159)
...||+||++|.|| +.+|+|++++|+|++++.++..|.+++.
T Consensus 452 ~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 452 RSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999998 8999999999999999999999988764
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-41 Score=377.44 Aligned_cols=253 Identities=29% Similarity=0.437 Sum_probs=192.6
Q ss_pred HHHhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHhcCccc
Q 001094 723 MLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPL 802 (1159)
Q Consensus 723 mLRRtK~~v~dg~pii~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~ 802 (1159)
-+||+|++|.. +|||+.+.+++|+|++.|+++|+.+.......+ ..+....+..+++..+++|||+|+||.
T Consensus 13 ~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~hP~ 83 (271)
T 1z5z_A 13 GLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDHPA 83 (271)
T ss_dssp --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTCTH
T ss_pred cccccHHHHHh-----hCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHH----HhccccchHHHHHHHHHHHHHHcCCHH
Confidence 58999999986 899999999999999999999999876544332 122222245678999999999999998
Q ss_pred cccccCcchhhhhHHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccc
Q 001094 803 LVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNC 882 (1159)
Q Consensus 803 Lv~~~~~~~~~~~~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c 882 (1159)
++....
T Consensus 84 l~~~~~-------------------------------------------------------------------------- 89 (271)
T 1z5z_A 84 LLKGGE-------------------------------------------------------------------------- 89 (271)
T ss_dssp HHHCSC--------------------------------------------------------------------------
T ss_pred HhcCCc--------------------------------------------------------------------------
Confidence 764100
Q ss_pred cccccccchhhhhhhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCccccccccccc
Q 001094 883 KIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSF 962 (1159)
Q Consensus 883 ~~~~~~~~vf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~ 962 (1159)
.....++|+..+.++|..+..
T Consensus 90 --------------------------------------------~~~~~s~K~~~L~~ll~~~~~--------------- 110 (271)
T 1z5z_A 90 --------------------------------------------QSVRRSGKMIRTMEIIEEALD--------------- 110 (271)
T ss_dssp --------------------------------------------CCSTTCHHHHHHHHHHHHHHH---------------
T ss_pred --------------------------------------------cccccCHHHHHHHHHHHHHHh---------------
Confidence 001247899999999887532
Q ss_pred CCCccCCCCCCCCCCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhC-CCcEEecCCCCCHH
Q 001094 963 NGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVF 1041 (1159)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~-gi~~~rldGs~s~~ 1041 (1159)
.++|+||||+|+.++++|+..|... |+++.+++|+++.+
T Consensus 111 ----------------------------------------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~ 150 (271)
T 1z5z_A 111 ----------------------------------------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKK 150 (271)
T ss_dssp ----------------------------------------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHH
T ss_pred ----------------------------------------CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHH
Confidence 5789999999999999999999885 99999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHH
Q 001094 1042 ARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1121 (1159)
Q Consensus 1042 ~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerI 1121 (1159)
+|++++++|+++++++|+|+|+++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||+|
T Consensus 151 ~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i 230 (271)
T 1z5z_A 151 ERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKI 230 (271)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHH
Confidence 99999999999778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCccCccccCCCHHHHHhhhcC
Q 001094 1122 LALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1159 (1159)
Q Consensus 1122 l~lq~~K~~l~~~~lg~~~~~~~~~~lt~~dL~~Lf~~ 1159 (1159)
++++..|..+++.+++.++ .....++.+||+.||.+
T Consensus 231 ~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 266 (271)
T 1z5z_A 231 DQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 266 (271)
T ss_dssp HHHHHHCHHHHTTGGGGTT--HHHHTSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHccCc--hhhhcCCHHHHHHHhcc
Confidence 9999999999999998754 34578999999999974
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.6e-37 Score=370.75 Aligned_cols=123 Identities=13% Similarity=0.144 Sum_probs=101.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.++|+|||+++..+++.|...|. +..++|.++..+|++++++|++ +.++||| +|+++++|+|++.++.||++|
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~-g~~~vLv-~T~~~~~Gldlp~~~~Vi~~~ 420 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFRAIV-SSQVLDEGIDVPDANVGVIMS 420 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCSBCB-CSSCCCSSSCSCCBSEEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC-CCCCEEE-EcCchhcCcccccCcEEEEEC
Confidence 57899999999999999999985 3468999999999999999998 7788875 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCC-CcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQT-RPVSVLRLTVKNTVEDRILALQQKKREMV 1132 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQt-k~V~V~rLv~~~TIEerIl~lq~~K~~l~ 1132 (1159)
++|||....|++||++|.||. +.|.||.|+.++|+|+++.++++.|++++
T Consensus 421 ~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 421 GSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp CSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 999999999999999999998 78999999999999999999999888764
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=9.6e-33 Score=357.22 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=79.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC------------CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecccccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1070 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~------------gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GL 1070 (1159)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|++++.++||| +|+++|+||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV-aT~~~~eGI 708 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEE-EeCchhcCC
Confidence 5789999999999999999999976 555666788899999999999999867788766 779999999
Q ss_pred CccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhC
Q 001094 1071 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1137 (1159)
Q Consensus 1071 NL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg 1137 (1159)
|++.|++||+||++|||....||+|| ||.+++.|++|+.++|+|++.+ ++..|..++..++.
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6668899999999999999866 66677777766654
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.2e-32 Score=334.08 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=92.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCC------------CcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecccccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSS------------IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1070 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~g------------i~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GL 1070 (1159)
++.|+|||++++.+++.|...|...+ ..+..++|+|+.++|.+++++|++++.++||| +|+++++||
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~Gl 466 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI-ATSVADEGI 466 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEE-ECCCTTCCE
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEE-EcchhhcCC
Confidence 57899999999999999999998763 34556667999999999999999877888876 779999999
Q ss_pred CccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhC
Q 001094 1071 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1137 (1159)
Q Consensus 1071 NL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg 1137 (1159)
|++.+++||+||++|||....||+|| |+.+++.++.|+.+++++++ ..++..|..++..++.
T Consensus 467 Dlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 467 DIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp ETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999 77789999999999999988 5667777777777664
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3e-32 Score=333.39 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=74.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC------------CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecccccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1070 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~------------gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GL 1070 (1159)
.+.|+|||++++.+++.|...|... |..+..++|+|+.++|.+++++|++++.++||| +|+++++||
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~Gi 467 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 467 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEE-EEC------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEE-EcCchhcCC
Confidence 5789999999999999999999876 555566677899999999999999877788776 669999999
Q ss_pred CccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhC
Q 001094 1071 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1137 (1159)
Q Consensus 1071 NL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg 1137 (1159)
|++.+++||+||++|||....||+|| ||.+++.+|.|+.++|+|++ +.++..|..++..++.
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999 56688999999999999999 6678888888887764
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-31 Score=341.19 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=79.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC------------CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecccccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1070 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~------------gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GL 1070 (1159)
++.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|++++.++||| +|+++++||
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLV-aT~~~~~GI 708 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEE-EcCchhcCC
Confidence 5789999999999999999999873 556677788899999999999999877788776 669999999
Q ss_pred CccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhC
Q 001094 1071 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1137 (1159)
Q Consensus 1071 NL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg 1137 (1159)
|++.|++||+||++|||....||+|| ||.+++.+++|+.++|+|++ ..++..|..++..++.
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 55688999999999999999 7788888888887764
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=4.9e-29 Score=302.80 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=104.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+. +..++.|...|...+.++..++|.|+..+|++++++|++ +++.|||+|..++++|+|++.+++||+++
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~-g~~~vLv~T~~~~~~GiDip~v~~vi~~~ 424 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN-GKGIIIVASYGVFSTGISVKNLHHVVLAH 424 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH-CCSCEEEEEHHHHHHSCCCCSEEEEEESS
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC-CCCCEEEEEcChhhcccccccCcEEEEeC
Confidence 4678889988 888888999999998899999999999999999999997 77888886669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCC-cEEEEEEEeCCCH
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTR-PVSVLRLTVKNTV 1117 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk-~V~V~rLv~~~TI 1117 (1159)
++|++....|++||++|.|+.+ .|.||.++.+.++
T Consensus 425 ~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~ 460 (510)
T 2oca_A 425 GVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGV 460 (510)
T ss_dssp CCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCB
T ss_pred CCCCHHHHHHHHhcccccCCCCceEEEEEeecchhh
Confidence 9999999999999999999987 7999999987653
No 13
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.3e-28 Score=310.23 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCC----CcEEecCC--------CCCHHHHHHHHHHHhcCCCceEEEeecccccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSS----IQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1070 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~g----i~~~rldG--------s~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GL 1070 (1159)
++.++|||++++.+++.|...|...+ +++..++| +|+.++|.+++++|++++.++||| +|.++++||
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLV-aT~v~~~Gi 475 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI-ATSVADEGI 475 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSE-EEESSCCC-
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEE-EechhhcCC
Confidence 56799999999999999999999988 89999955 999999999999999756778865 779999999
Q ss_pred CccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHH
Q 001094 1071 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDR 1120 (1159)
Q Consensus 1071 NL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEer 1120 (1159)
|++.+++||+||++||+....||+|| +|. ++..++.|+.++++++.
T Consensus 476 Dip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 476 DIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp --CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred cCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 99999999999999999999999999 774 66788999999888654
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=5.6e-29 Score=313.81 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=105.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhC------CCcEEecCCC--------CCHHHHHHHHHHHhcCCCceEEEeeccccccc
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDS------SIQYRRLDGT--------MSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1069 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~------gi~~~rldGs--------~s~~~R~~~v~~F~~d~~~~VLLlStkagg~G 1069 (1159)
+.++|||++++.+++.|...|... |+++..++|. |+..+|.+++++|++ ++++||| +|.++++|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~-g~~~VLV-aT~~~~~G 477 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT-GKINLLI-ATTVAEEG 477 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCSE-EECSCCTT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc-CCCcEEE-EccccccC
Confidence 789999999999999999999987 8999999999 999999999999998 7788776 67999999
Q ss_pred cCccccCEEEEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhC
Q 001094 1070 LNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1137 (1159)
Q Consensus 1070 LNL~~A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq~~K~~l~~~~lg 1137 (1159)
||++.++.||+||++|||....|++||+.|-| ..++.+...++.+.....+...+..++...+.
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAIH 541 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986554 55666777787666655555566666555553
No 15
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.95 E-value=5.4e-27 Score=262.22 Aligned_cols=219 Identities=16% Similarity=0.121 Sum_probs=159.4
Q ss_pred CCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCCccc--cHHHHHHHHHHHHHhcCcccccc-ccCcchhhhh
Q 001094 739 NLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ--NYVNILLMLLRLRQACDHPLLVK-GFDSNSLLRS 815 (1159)
Q Consensus 739 ~LPpk~~~vv~v~ls~~Er~~Y~~l~~~~~~~~~~~~~~g~~~~--~~~~iL~~LlrLRq~c~hP~Lv~-~~~~~~~~~~ 815 (1159)
.-|++.+.++++.||+.|+++|+.+.......+..+........ ....+..++++||++||||+|+. .+........
T Consensus 19 ~~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~ 98 (328)
T 3hgt_A 19 SGNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITR 98 (328)
T ss_dssp ---CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCST
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcccccc
Confidence 34999999999999999999999998766666666655433221 13466778899999999999873 2111100000
Q ss_pred HHHHHhhCcHHHHHHHHHHhhhccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhhhh
Q 001094 816 SVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKA 895 (1159)
Q Consensus 816 ~~e~ak~l~~~~~~~ll~~le~~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~~~ 895 (1159)
T Consensus 99 -------------------------------------------------------------------------------- 98 (328)
T 3hgt_A 99 -------------------------------------------------------------------------------- 98 (328)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccccCCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCC
Q 001094 896 TLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDL 975 (1159)
Q Consensus 896 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Ki~~lle~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1159)
...+.....|+|+..+-.+|..+.
T Consensus 99 ---------------------------~~~~~l~~~SGKf~~L~~LL~~l~----------------------------- 122 (328)
T 3hgt_A 99 ---------------------------DVPAHLAENSGKFSVLRDLINLVQ----------------------------- 122 (328)
T ss_dssp ---------------------------THHHHHHHTCHHHHHHHHHHHHHT-----------------------------
T ss_pred ---------------------------chhhHHHHcCccHHHHHHHHHHHH-----------------------------
Confidence 000011225899998888887752
Q ss_pred CCCCCccccchhhHHHHhhhcccccccCCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCC
Q 001094 976 HGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE 1055 (1159)
Q Consensus 976 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~ 1055 (1159)
+.++|||||||++.|||+||.+|...++.|.|+||++.. .+++. ....
T Consensus 123 --------------------------~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~-----~~~~ 170 (328)
T 3hgt_A 123 --------------------------EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA-----NDFS 170 (328)
T ss_dssp --------------------------TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCS
T ss_pred --------------------------hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc-----ccCC
Confidence 268999999999999999999999999999999999654 33221 1356
Q ss_pred ceEEEeeccccccccC-----ccccCEEEEecCCCCcChh-hHHhhhhccc--CCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001094 1056 VSVMIMSLKAASLGLN-----MVAACHVLLLDLWWNPTTE-DQAIDRAHRI--GQTRPVSVLRLTVKNTVEDRILALQQ 1126 (1159)
Q Consensus 1056 ~~VLLlStkagg~GLN-----L~~A~~VI~lD~~WNP~~e-~QAigR~hRi--GQtk~V~V~rLv~~~TIEerIl~lq~ 1126 (1159)
+.++|+ +.+||.|+| |+.|++||+||+.|||... .||+.|+||+ ||+++|.||||++.+|||+.++..-.
T Consensus 171 ~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 171 CTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred ceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 788887 468888886 8999999999999999998 8999999999 78999999999999999999998744
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=7.8e-27 Score=288.69 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=95.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCc--------EEecCCCCCHHHHHHHHHHHhcCC-CceEEEeeccccccccCcc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQ--------YRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMV 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~--------~~rldGs~s~~~R~~~v~~F~~d~-~~~VLLlStkagg~GLNL~ 1073 (1159)
++.|+|||++....++.|...|...+.. +..++|.++ ++|++++++|++.. ...++|++++++++|+|+.
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 5689999999999999999999775432 678999986 47999999999843 3678888999999999999
Q ss_pred ccCEEEEecCCCCcChhhHHhhhhcccCC---CCcEEEEEEE
Q 001094 1074 AACHVLLLDLWWNPTTEDQAIDRAHRIGQ---TRPVSVLRLT 1112 (1159)
Q Consensus 1074 ~A~~VI~lD~~WNP~~e~QAigR~hRiGQ---tk~V~V~rLv 1112 (1159)
.+++||+++++|++....|++||++|+|+ +..+.|+.++
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999999999999999999999995 5568888776
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=1.4e-25 Score=261.89 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=98.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||++....++.+...|...|+.+..++|+++.++|.++++.|++ +...||+ +|.++++|+|+..+++||+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv-~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRILV-ATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TCCSEEE-ESCCCSSCBCCTTEEEEEESS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc-CCCcEEE-ECChhhcCCCcccCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999997 6777776 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|++....|++||++|.|+...+ +.|+...
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 357 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE 357 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEE--EEEECSH
T ss_pred CCCCHHHHHHhcccccCCCCceEE--EEEEccc
Confidence 999999999999999999976654 3445443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=2.6e-25 Score=256.69 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=100.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|...|+.+..++|+++..+|.++++.|++ +...||+ +|.++++|+|+..+++||+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv-~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-KKIRILI-ATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT-TSSSEEE-ECTTHHHHCCCSCCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChhhcCCCcccCCEEEEec
Confidence 56799999999999999999999999999999999999999999999997 6777777 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCH
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TI 1117 (1159)
++|++....|++||++|.|+...+ +.++.+...
T Consensus 315 ~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 315 LPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp CCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred CCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 999999999999999999987744 445666543
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=2.1e-25 Score=254.49 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=99.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||++....++.+...|. ....++|+++..+|.+++++|++ +..+||+ +|.++++|+|+..+++||+++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv-~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE-GEYDMLI-TTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT-TSCSEEE-ECHHHHTTCCCCCBSEEEESS
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc-CCCcEEE-EcCccccCCCccCCCEEEEec
Confidence 57899999999999999999887 56889999999999999999998 6777776 679999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1125 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEerIl~lq 1125 (1159)
++|++....|++||++|.||...+.++.. .+.++++.|.+..
T Consensus 293 ~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 293 APQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp CCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred CCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999887777766 4445666665544
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.93 E-value=3e-24 Score=252.77 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=99.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
...|+|||++....++.+...|...|+.+..++|+++..+|.++++.|++ +..+||+ +|.++++|+|+..+++||++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv-~T~~~~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS-GASRVLI-STDVWARGLDVPQVSLIINYD 352 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH-TSSCEEE-ECGGGSSSCCCTTEEEEEESS
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC-CCCCEEE-ECChhhCcCCcccCCEEEEEC
Confidence 35699999999999999999999999999999999999999999999998 6677776 779999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
++|++....|++||++|.|+.. .++.|+.++.
T Consensus 353 ~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 353 LPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp CCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred CCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 9999999999999999999765 4555666653
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.93 E-value=3.2e-24 Score=251.48 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=99.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||++....++.+...|...|+.+..++|+++..+|.++++.|++ +..+||+ +|.++++|+|+..+++||++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv-~T~~~~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ-GKVRTLV-CSDLLTRGIDIQAVNVVINFD 334 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT-TSSSEEE-ESSCSSSSCCCTTEEEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc-CCCcEEE-EcCccccCCCccCCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999997 6777777 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
++|++....|++||++|.|+.. .++.|+.++.
T Consensus 335 ~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~ 366 (400)
T 1s2m_A 335 FPKTAETYLHRIGRSGRFGHLG--LAINLINWND 366 (400)
T ss_dssp CCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG
T ss_pred CCCCHHHHHHhcchhcCCCCCc--eEEEEeccch
Confidence 9999999999999999999764 4556676663
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.92 E-value=2.1e-23 Score=243.19 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=97.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|+..++.+..++|+++..+|.+++++|++ +..+||+ +|.++++|+|+..+++||++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv-~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE-GRSKVLI-TTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCCEEE-ECGGGSSSCCCTTEEEEEESS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC-CCCCEEE-ECChhhcCCCcccCCEEEEcC
Confidence 46799999999999999999999999999999999999999999999998 6777766 679999999999999999999
Q ss_pred CCC------CcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1083 LWW------NPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~~W------NP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
++| ++....|++||++|.|+... ++.|+..
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~ 355 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFGRKGV--AISFVHD 355 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS
T ss_pred CCCCCcCCCCHHHhhHhccccccCCCCce--EEEEEec
Confidence 999 99999999999999997654 4444544
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=5.5e-24 Score=250.28 Aligned_cols=109 Identities=18% Similarity=0.295 Sum_probs=86.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|...++.+..++|.++.++|.++++.|++ +..+||+ +|.++++|+|+..+++||++|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv-~T~~~~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS-GSSRVLI-TTDLLARGIDVQQVSLVINYD 356 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC-C---CEE-ECSSCC--CCGGGCSCEEESS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc-CCCcEEE-ECCccccCCCccCCCEEEEeC
Confidence 45799999999999999999999999999999999999999999999987 6677765 779999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|++....|++||++|.|+.. .++.|+.++
T Consensus 357 ~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 357 LPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp CCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred CCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 9999999999999999999765 455567666
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.91 E-value=2.7e-25 Score=259.47 Aligned_cols=109 Identities=17% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||+.....++.+...|+..++.+..++|+++..+|.++++.|++ +..+||+ +|.++++|+|+..+++||++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv-~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRILI-STDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC-CCCcEEE-ECChhhcCCCcccCCEEEEeC
Confidence 35699999999999999999999999999999999999999999999987 6677666 779999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|++....|++||++|.|+...+ +.|+.++
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp ---------------------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 999999999999999999987644 4455554
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.90 E-value=8.9e-22 Score=231.10 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=95.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|...++.+..++|.|+..+|.++++.|++ +..+||+ +|.++++|+|+..+++||++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv-~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKVLV-TTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TSCSEEE-ECGGGTSSCCCTTEEEEEESS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC-CCCcEEE-EcCccccCCCccCCCEEEEEC
Confidence 46799999999999999999999999999999999999999999999998 6777766 669999999999999999999
Q ss_pred CCCCc------ChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1083 LWWNP------TTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~~WNP------~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
++|++ ....|++||++|.|+.. .++.|+..
T Consensus 343 ~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~ 378 (412)
T 3fht_A 343 LPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDS 378 (412)
T ss_dssp CCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECS
T ss_pred CCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcC
Confidence 99987 48899999999999754 34445543
No 26
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.89 E-value=7.2e-22 Score=235.17 Aligned_cols=106 Identities=23% Similarity=0.308 Sum_probs=96.3
Q ss_pred ceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC
Q 001094 1005 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1084 (1159)
Q Consensus 1005 ~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~ 1084 (1159)
.++|||++....++.|...|...|++...++|+++..+|++++++|++ +...||+ +|.+++.|||+..+++||++|++
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLv-aT~v~~rGlDi~~v~~VI~~d~p 378 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN-GSMKVLI-ATSVASRGLDIKNIKHVINYDMP 378 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT-SSCSEEE-ECGGGTSSCCCTTCCEEEESSCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc-CCCcEEE-EchhhhCCCCcccCCEEEEECCC
Confidence 359999999999999999999999999999999999999999999998 6777776 66999999999999999999999
Q ss_pred CCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1085 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1085 WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
|++....||+||++|.|++.. ++.|+..
T Consensus 379 ~~~~~y~qriGR~gR~g~~G~--a~~~~~~ 406 (434)
T 2db3_A 379 SKIDDYVHRIGRTGRVGNNGR--ATSFFDP 406 (434)
T ss_dssp SSHHHHHHHHTTSSCTTCCEE--EEEEECT
T ss_pred CCHHHHHHHhcccccCCCCCE--EEEEEec
Confidence 999999999999999998654 4445653
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=230.81 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=97.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|...|+.+..++|.++.++|.+++++|++ +..+||+ +|.++++|+|+..+++||++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~-g~~~vlv-aT~~~~~Gidip~v~~Vi~~~ 352 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPILV-ATAVAARGLDISNVKHVINFD 352 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH-TSSCEEE-ECHHHHTTSCCCCEEEEEESS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcCCCcccCCEEEEEc
Confidence 46799999999999999999999999999999999999999999999997 6777776 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|++....|++||++|.|+.. .++.|+.+.
T Consensus 353 ~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (417)
T 2i4i_A 353 LPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 383 (417)
T ss_dssp CCSSHHHHHHHHTTBCC--CCE--EEEEEECGG
T ss_pred CCCCHHHHHHhcCccccCCCCc--eEEEEEccc
Confidence 9999999999999999999764 555566654
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=5.3e-21 Score=232.75 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=96.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
++.++|||+......+.+...|...|+.+..|+|+++.++|.+++++|.+ ++++||+ +|.++|.|+|+..++.||+++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~vlV-aT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-DDLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEE-ECTTSCTTTCCTTCCEEEESS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeEEE-EechhhCCCCccCccEEEEEC
Confidence 56799999999999999999999999999999999999999999999998 6778877 569999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V 1108 (1159)
++|++....|++||++|.|+...+.+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCCCHHHHHHHhccccCCCCCceEEE
Confidence 99999999999999999998765444
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=8e-21 Score=249.56 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=96.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~--gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~ 1080 (1159)
.+.+++||++....++.+...|+.. ++.+..++|.|+..+|++++++|.+ ++++||| +|.++++|+|+..+++||+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~-g~~~VLV-aT~v~e~GiDip~v~~VIi 888 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTIII 888 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-TSCCEEE-ESSTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc-CCCcEEE-ECCcceeeecccCCcEEEE
Confidence 4679999999999999999999886 8899999999999999999999997 7788877 5689999999999999999
Q ss_pred ecC-CCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1081 LDL-WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1081 lD~-~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+++ .|++....|++||++|.|+.. ++|.++..+
T Consensus 889 ~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 889 ERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred eCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 988 699999999999999999654 455566543
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.85 E-value=3.8e-20 Score=218.53 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=91.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEE-ecCCCCCHHHHHHHHHHHhcCCCceEEEee---ccccccccCccc-cCEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYR-RLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACHV 1078 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~-rldGs~s~~~R~~~v~~F~~d~~~~VLLlS---tkagg~GLNL~~-A~~V 1078 (1159)
+.++|||+.....++.+...|...|+... .++|. +|+ +++|++ +.++||++| |.+++.|+|+.. +++|
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~-g~~~vLvat~s~T~~~~~GiDip~~v~~V 324 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV-GKINILIGVQAYYGKLTRGVDLPERIKYV 324 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT-TSCSEEEEECCTTCCCCCCCCCTTTCCEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC-CCCeEEEEecCcCchhhccCccccccCEE
Confidence 46899999999999999999999999998 99984 454 999998 788999975 899999999999 9999
Q ss_pred EEecCC--CCcChhhHHhhhhcccCCC--CcEEEEEEE
Q 001094 1079 LLLDLW--WNPTTEDQAIDRAHRIGQT--RPVSVLRLT 1112 (1159)
Q Consensus 1079 I~lD~~--WNP~~e~QAigR~hRiGQt--k~V~V~rLv 1112 (1159)
|++|++ +++....|++||++|.|+. +.-.++.|+
T Consensus 325 I~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 325 IFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp EEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred EEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999999 9999999999999999985 455666666
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.84 E-value=4.9e-20 Score=226.86 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=96.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+......+.|...|...|+....|+|+|+.++|.+++++|.. +.+.||+ +|.++|.|||+...+.||+++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~-g~~~VlV-AT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA-NEIQVVV-ATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSSSEEE-ECTTSCTTCCCSCEEEEEESS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc-CCCeEEE-EechhhcCCCcccccEEEEeC
Confidence 46799999999999999999999999999999999999999999999998 6778877 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1109 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~ 1109 (1159)
+++++....|++||++|.|+...+.++
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999999999999986654443
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.7e-21 Score=233.56 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=76.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+.....++.+...|...++.+..++|+++..+|.++++.|++ +..+||+ +|.++++|+|+..++.||++|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~-g~~~VLV-aT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV-GTSKVLV-TTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS-SSCCCCE-ECC-----CCCTTCCEEEC--
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeEEE-eCChhhcCCCccCCCEEEEEC
Confidence 46799999999999999999999999999999999999999999999987 6777766 669999999999999999999
Q ss_pred CC------CCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1083 LW------WNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~~------WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
++ +++....|++||++|.|+...+.+ |+..
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~--l~~~ 469 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN--FVHD 469 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEE--EECT
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE--EEeC
Confidence 99 788899999999999997654443 4543
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=223.77 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||++.....+.+...|...++.+..++|.++..+|..+++.|.+ +..+||| +|.+++.|||+..+++||++|
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~-g~~~iLv-~T~~~~~GlDip~v~~VI~~d 409 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE-GKEKVLV-TTNVCARGIDVEQVSVVINFD 409 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc-CCCcEEE-EccccccCCccccCCEEEEec
Confidence 35689999999999999999999999999999999999999999999998 6777766 669999999999999999999
Q ss_pred CCCCc------ChhhHHhhhhcccCCCCcE
Q 001094 1083 LWWNP------TTEDQAIDRAHRIGQTRPV 1106 (1159)
Q Consensus 1083 ~~WNP------~~e~QAigR~hRiGQtk~V 1106 (1159)
++|++ ....|++||++|.|+...+
T Consensus 410 ~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 410 LPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp ------------------------------
T ss_pred CCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 99976 5889999999999975543
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-18 Score=225.62 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=102.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCc---------------------------------------EEecCCCCCHHHH
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQ---------------------------------------YRRLDGTMSVFAR 1043 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~---------------------------------------~~rldGs~s~~~R 1043 (1159)
...++|||+......+.+...|...++. +..++|+|+..+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 4568999999999999999999775543 6779999999999
Q ss_pred HHHHHHHhcCCCceEEEeeccccccccCccccCEEEE----ecC----CCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LDL----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1044 ~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~----lD~----~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+.+.+.|++ +.++||+ +|.+++.|+|+.+.+.||. ||. +|+|....|++||++|.|+....+++.|+.++
T Consensus 422 ~~ve~~F~~-G~ikVLV-AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 422 EVIEILFQE-GFLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHHHHHHHT-TCCSEEE-EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HHHHHHHhc-CCCcEEE-EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999999998 7888888 5599999999999999999 999 99999999999999999998889999999876
Q ss_pred CHHHHH
Q 001094 1116 TVEDRI 1121 (1159)
Q Consensus 1116 TIEerI 1121 (1159)
.-+..+
T Consensus 500 ~e~~~~ 505 (1010)
T 2xgj_A 500 MEPQVA 505 (1010)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 433333
No 35
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.2e-19 Score=223.91 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=97.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC---CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1079 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~---gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI 1079 (1159)
++.++|||+.....++.+...|... ++.+..++|.|+..+|.+++++|.+ +...||+ +|.+++.|||+..+++||
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~-g~~~vLV-aT~~~~~GiDip~v~~VI 364 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGILV-CTDVGARGMDFPNVHEVL 364 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEEEE-ECGGGTSSCCCTTCCEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc-CCCeEEE-EcchhhcCCCcccCCEEE
Confidence 5789999999999999999999876 9999999999999999999999998 7777776 669999999999999999
Q ss_pred EecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1080 LLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1080 ~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|++|++....|++||++|.|+.. .++.|+.+.
T Consensus 365 ~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~ 398 (579)
T 3sqw_A 365 QIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD 398 (579)
T ss_dssp EESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG
T ss_pred EcCCCCCHHHhhhhccccccCCCCc--eEEEEEccc
Confidence 9999999999999999999999754 344455554
No 36
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.81 E-value=2.6e-19 Score=219.93 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=97.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC---CCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1079 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~---gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI 1079 (1159)
.+.++|||+......+.+...|... ++.+..++|.|+..+|.++++.|.+ +.+.||+ +|.+++.|||+..+++||
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~-g~~~vLv-aT~~~~~GiDip~v~~VI 415 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-DESGILV-CTDVGARGMDFPNVHEVL 415 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-CSSEEEE-ECGGGTSSCCCTTCCEEE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-CCCCEEE-EcchhhcCCCcccCCEEE
Confidence 5789999999999999999999876 9999999999999999999999998 6777777 669999999999999999
Q ss_pred EecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1080 LLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1080 ~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|+++++....|++||++|.|+.. .++.|+..+
T Consensus 416 ~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~ 449 (563)
T 3i5x_A 416 QIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD 449 (563)
T ss_dssp EESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG
T ss_pred EECCCCchhhhhhhcCccccCCCCc--eEEEEEchh
Confidence 9999999999999999999999654 444455554
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.80 E-value=9.3e-20 Score=229.42 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=74.1
Q ss_pred HHHHHHHHhh---CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCC-CCcChhhH
Q 001094 1017 LDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTEDQ 1092 (1159)
Q Consensus 1017 LdlLe~~L~~---~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~-WNP~~e~Q 1092 (1159)
++.+...|.. .++.+..++|+|+.++|++++++|.+ ++++||+ +|.++++|+|+..+++||++|++ |+.+...|
T Consensus 599 a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~-G~~~ILV-aT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Q 676 (780)
T 1gm5_A 599 AVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE-GRYDILV-STTVIEVGIDVPRANVMVIENPERFGLAQLHQ 676 (780)
T ss_dssp HHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT-TSSSBCC-CSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC-CCCeEEE-ECCCCCccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 4455555655 46788899999999999999999997 7788776 67999999999999999999998 47888999
Q ss_pred HhhhhcccCCCCcEEE
Q 001094 1093 AIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1093 AigR~hRiGQtk~V~V 1108 (1159)
++||++|.|+...+.+
T Consensus 677 r~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 677 LRGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHHTSCCSSTTCEEEC
T ss_pred HhcccCcCCCCCEEEE
Confidence 9999999997765443
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4e-18 Score=222.77 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=99.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCc---------------------------------------EEecCCCCCHHHH
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQ---------------------------------------YRRLDGTMSVFAR 1043 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~---------------------------------------~~rldGs~s~~~R 1043 (1159)
.+.++|||+......+.+...|...++. +..++|+|+..+|
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 4679999999999999999888653332 6789999999999
Q ss_pred HHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcCh--------hhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT--------EDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1044 ~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~--------e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+.+++.|.+ +.++||+ +|.+++.|||+.+.++||.++..|++.. ..|++||++|.|+...-+++.++..+
T Consensus 520 ~~v~~~F~~-G~ikVLV-AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 520 EVIEILFQE-GFLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHHHHH-TCCCEEE-EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHHHHHHhC-CCCeEEE-ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999998 7888888 5599999999999999999998888775 78999999999999999999998877
Q ss_pred CHHHHHHH
Q 001094 1116 TVEDRILA 1123 (1159)
Q Consensus 1116 TIEerIl~ 1123 (1159)
..+..+..
T Consensus 598 ~~~~~~~~ 605 (1108)
T 3l9o_A 598 MEPQVAKG 605 (1108)
T ss_dssp CCHHHHHH
T ss_pred cCHHHHHH
Confidence 54444433
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.74 E-value=8.7e-17 Score=202.76 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=94.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhC------------------------------CCcEEecCCCCCHHHHHHHHHHHhc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDS------------------------------SIQYRRLDGTMSVFARDKAVKDFNT 1052 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~------------------------------gi~~~rldGs~s~~~R~~~v~~F~~ 1052 (1159)
.+.++|||+......+.+...|... +..+..++|+++.++|..+.+.|.+
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 3567777777777766666666431 1235568999999999999999998
Q ss_pred CCCceEEEeeccccccccCccccCEEEE----ec---CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHH
Q 001094 1053 LPEVSVMIMSLKAASLGLNMVAACHVLL----LD---LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119 (1159)
Q Consensus 1053 d~~~~VLLlStkagg~GLNL~~A~~VI~----lD---~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEe 1119 (1159)
+.++||+ +|.+++.|+|+.+.+.||. || .++++....|++||++|.|+.++-.+++|+.+...+.
T Consensus 321 -g~~~vlv-aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 321 -GNIKVVV-ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp -TSCCEEE-ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred -CCCeEEE-ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 7788877 6699999999999999988 66 7889999999999999999998999999998877554
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.73 E-value=5.5e-16 Score=200.92 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=99.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCC---------------------------------------cEEecCCCCCHHHH
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSI---------------------------------------QYRRLDGTMSVFAR 1043 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi---------------------------------------~~~rldGs~s~~~R 1043 (1159)
...++|||+......+.+...|...++ .+..++|+++..+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 457999999999999999999977666 46889999999999
Q ss_pred HHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCC---------CcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1044 DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW---------NPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1044 ~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~W---------NP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
+.+++.|.. +.++||+ +|.+++.|||+.. .+||+++..+ ++....|++||++|.|+...-+++.++..
T Consensus 415 ~~v~~~F~~-G~~kVLv-AT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 415 ELIEILFSK-GFIKVLF-ATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp HHHHHHHHT-TCCSEEE-ECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred HHHHHHHHC-CCCcEEE-EchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCC
Confidence 999999998 7788887 5699999999999 7777755544 89999999999999999999888888865
Q ss_pred CCHHHHHH
Q 001094 1115 NTVEDRIL 1122 (1159)
Q Consensus 1115 ~TIEerIl 1122 (1159)
+..+..++
T Consensus 492 ~~~~~~~~ 499 (997)
T 4a4z_A 492 SPLSIATF 499 (997)
T ss_dssp SCCCHHHH
T ss_pred CcchHHHH
Confidence 55544443
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.72 E-value=3.3e-16 Score=197.97 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=90.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCC------------------------------------CcEEecCCCCCHHHHHHH
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSS------------------------------------IQYRRLDGTMSVFARDKA 1046 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~g------------------------------------i~~~rldGs~s~~~R~~~ 1046 (1159)
.+.++|||+......+.+...|.... ..+..++|+++.++|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 45677888887777777777765431 347789999999999999
Q ss_pred HHHHhcCCCceEEEeeccccccccCccccCEEEE----ec-------CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1047 VKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD-------LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1047 v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~----lD-------~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
.+.|.+ +..+||+ +|.+++.|+|+.+.+.||. || .++++....|++||++|.|+..+-.+++|+...
T Consensus 331 ~~~f~~-g~~~vlv-aT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 331 EEGFRQ-RKIKVIV-ATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp HHHHHT-TCSCEEE-ECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred HHHHHc-CCCeEEE-EChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCc
Confidence 999998 7888887 5699999999999999998 89 799999999999999999998888999998776
Q ss_pred C
Q 001094 1116 T 1116 (1159)
Q Consensus 1116 T 1116 (1159)
.
T Consensus 409 ~ 409 (715)
T 2va8_A 409 E 409 (715)
T ss_dssp G
T ss_pred h
Confidence 5
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.72 E-value=1e-16 Score=202.67 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=94.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhC---------------------------------CCcEEecCCCCCHHHHHHHHHHH
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDS---------------------------------SIQYRRLDGTMSVFARDKAVKDF 1050 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~---------------------------------gi~~~rldGs~s~~~R~~~v~~F 1050 (1159)
+.++|||+......+.+...|... ...+..++|+++.++|..+.+.|
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 456777777766666666555431 13478899999999999999999
Q ss_pred hcCCCceEEEeeccccccccCccccCEEEE----ec----CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCHHH
Q 001094 1051 NTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD----LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1119 (1159)
Q Consensus 1051 ~~d~~~~VLLlStkagg~GLNL~~A~~VI~----lD----~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TIEe 1119 (1159)
.+ +.++||+ +|.+++.|+|+.+.+.||. || .++++....|++||++|.|+.+.-.++.|+.+...+.
T Consensus 317 ~~-g~~~vlv-aT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 317 RK-GIIKAVV-ATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HT-TSSCEEE-ECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HC-CCCeEEE-ECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 98 7788887 5699999999999999888 77 5789999999999999999988889999998888654
No 43
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.69 E-value=5.6e-17 Score=181.59 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=118.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
..|+|||.+++.+++.. +.+||+++||+|||+++++++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~------------------------------- 153 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYL------------------------------- 153 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHH-------------------------------
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHH-------------------------------
Confidence 57999999999998863 3479999999999999987765310
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhc
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 549 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l 549 (1159)
. ...+++|||||. .|+.||.+++.++.... ...+..+.|...... ...
T Consensus 154 --------------------------~---~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~ 202 (282)
T 1rif_A 154 --------------------------E---NYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGASKDD-KYK 202 (282)
T ss_dssp --------------------------H---HCSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTCSSTT-CCC
T ss_pred --------------------------H---cCCCeEEEEECCHHHHHHHHHHHHHhcccc-cceEEEEeCCCcchh-hhc
Confidence 0 012369999998 58999999999986432 345555555433222 334
Q ss_pred CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCc
Q 001094 550 AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 629 (1159)
Q Consensus 550 ~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~ 629 (1159)
...+|+|+||+.+..... ..
T Consensus 203 ~~~~I~v~T~~~l~~~~~------------------------------------------------------------~~ 222 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQPK------------------------------------------------------------EW 222 (282)
T ss_dssp TTCSEEEECHHHHTTSCG------------------------------------------------------------GG
T ss_pred cCCcEEEEchHHHHhhHH------------------------------------------------------------HH
Confidence 678999999998854210 11
Q ss_pred ccceeEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEeccCCCCChHHHHhchhcccc
Q 001094 630 KVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFLRY 687 (1159)
Q Consensus 630 ~i~w~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTGTPiqN~l~DLyslL~fL~~ 687 (1159)
.-.|++||+||||++.+. .....+..+ .+.++++|||||. |...+++.++.++.|
T Consensus 223 ~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 223 FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 225789999999999854 444455566 6889999999995 445778888777654
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.66 E-value=3.6e-15 Score=192.51 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=83.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCC------------CcE-EecCCC----------C----------CH---------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSS------------IQY-RRLDGT----------M----------SV--------- 1040 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~g------------i~~-~rldGs----------~----------s~--------- 1040 (1159)
.+.|+|||+.....+..+...|.+.+ ++. +.++|. + +.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 35799999999999999888886643 444 455543 2 22
Q ss_pred --------------------HHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecCCCCcChhhHHhhhhccc
Q 001094 1041 --------------------FARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1100 (1159)
Q Consensus 1041 --------------------~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~~WNP~~e~QAigR~hRi 1100 (1159)
..|..++++|.+ +.++|||+ +....+|++.... +++++|.+.......||+||+.|.
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~-g~i~ILIv-vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN-QDIDLLIV-VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT-TSSSEEEE-SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHc-CCCeEEEE-cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 148889999998 77888885 5888999999999 678899999999999999999999
Q ss_pred CCC-Cc-EEEEEEE
Q 001094 1101 GQT-RP-VSVLRLT 1112 (1159)
Q Consensus 1101 GQt-k~-V~V~rLv 1112 (1159)
+.. |+ ..|+-|+
T Consensus 693 ~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 693 YDATKTFGNIVTFR 706 (1038)
T ss_dssp CCTTCCSEEEEESS
T ss_pred CCCCCCcEEEEEcc
Confidence 874 43 5566555
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.63 E-value=2e-14 Score=187.96 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=68.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEE-ecCCCCCHHHHHHHHHHHhcCCCceEEEee---ccccccccCccc-cCEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYR-RLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACHV 1078 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~-rldGs~s~~~R~~~v~~F~~d~~~~VLLlS---tkagg~GLNL~~-A~~V 1078 (1159)
+.++|||+......+.|...|...|+... .++| +|.+ +++|.+ +..+|||++ |.+++.|||+.. .++|
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~-G~~~VLVatas~TdvlarGIDip~~V~~V 381 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV-GKINILIGVQAYYGKLTRGVDLPERIKYV 381 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH-TSCSEEEEETTTHHHHCCSCCCTTTCCEE
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC-CCCCEEEEecCCCCeeEecCcCCCCCCEE
Confidence 36899999999999999999999999998 9999 3555 999998 888999975 899999999999 9999
Q ss_pred EEecCCC
Q 001094 1079 LLLDLWW 1085 (1159)
Q Consensus 1079 I~lD~~W 1085 (1159)
|++|++-
T Consensus 382 I~~d~P~ 388 (1104)
T 4ddu_A 382 IFWGTPS 388 (1104)
T ss_dssp EEESCCE
T ss_pred EEECCCC
Confidence 9999997
No 46
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=1.8e-15 Score=156.92 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=98.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||+++...++.|...|...|+.+..++|.|+..+|.+++++|++ +.+.||+ +|.+++.|+|++.+++||++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vLv-aT~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRILV-ATNLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEE-ESSCCSTTCCGGGCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-CCCcEEE-ECCchhcCcchhhCCEEEEEC
Confidence 46799999999999999999999999999999999999999999999997 7788877 559999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1114 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~ 1114 (1159)
++||+....|++||++|.||...+ +.|+..
T Consensus 108 ~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~ 137 (172)
T 1t5i_A 108 MPEDSDTYLHRVARAGRFGTKGLA--ITFVSD 137 (172)
T ss_dssp CCSSHHHHHHHHHHHTGGGCCCEE--EEEECS
T ss_pred CCCCHHHHHHHhcccccCCCCcEE--EEEEcC
Confidence 999999999999999999987643 344543
No 47
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.62 E-value=2e-15 Score=155.02 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=99.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||++....++.+...|...|+.+..++|+|+..+|..++++|++ +.++||+ +|.+++.|+|++.+++||++|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~vlv-~T~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR-GEYRYLV-ATDVAARGIDIENISLVINYD 111 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEE-ECGGGTTTCCCSCCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChhhcCCchhcCCEEEEeC
Confidence 56799999999999999999999999999999999999999999999998 6778776 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|++....|++||++|.||... ++.|+...
T Consensus 112 ~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~ 142 (163)
T 2hjv_A 112 LPLEKESYVHRTGRTGRAGNKGK--AISFVTAF 142 (163)
T ss_dssp CCSSHHHHHHHTTTSSCTTCCEE--EEEEECGG
T ss_pred CCCCHHHHHHhccccCcCCCCce--EEEEecHH
Confidence 99999999999999999998754 44556544
No 48
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=159.30 Aligned_cols=109 Identities=21% Similarity=0.264 Sum_probs=85.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
++.|+|||++....++.|...|...|+.+..++|+|+..+|++++++|++ +.++||+ +|.+++.|+|++.+++||++|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vLv-aT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSPILV-ATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH-TSSSEEE-EEC------CCCSBSEEEESS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EcChhhcCCCcccCCEEEEeC
Confidence 46899999999999999999999999999999999999999999999998 6778777 559999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++||+....|++||++|.|++. .++.|+...
T Consensus 123 ~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 123 LPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp CCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred CCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 9999999999999999999764 455566654
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.59 E-value=2.4e-14 Score=187.10 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=63.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee---ccccccccCcccc-CEEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVAA-CHVL 1079 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS---tkagg~GLNL~~A-~~VI 1079 (1159)
+.++|||+......+.|...|... ++...++|.+ .+++++|.+ +..+||+++ |.+++.|||+..+ ++||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~-G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVE-GEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHH-TSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHc-CCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 468999999999999999999988 9999999997 478899998 788999985 8999999999995 9999
Q ss_pred EecCC
Q 001094 1080 LLDLW 1084 (1159)
Q Consensus 1080 ~lD~~ 1084 (1159)
++|++
T Consensus 348 ~~~~P 352 (1054)
T 1gku_B 348 FVGCP 352 (1054)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 99999
No 50
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.59 E-value=9.3e-15 Score=150.28 Aligned_cols=111 Identities=18% Similarity=0.293 Sum_probs=96.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
++.|+|||++....++.+...|...++.+..++|+|+..+|.++++.|++ +..+||+ +|.+++.|+|++.+++||++|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv-~T~~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSSRILI-STDLLARGIDVQQVSLVINYD 106 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSEEE-EEGGGTTTCCCCSCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc-CCCEEEE-EcChhhcCCCcccCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999997 7778877 559999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCH
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TI 1117 (1159)
++|++....|++||++|.|+... ++.|+.++..
T Consensus 107 ~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 107 LPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp CCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred CCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 99999999999999999997664 4567777754
No 51
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=160.54 Aligned_cols=108 Identities=20% Similarity=0.217 Sum_probs=95.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
+.|+|||+++...++.|...|...|+.+..++|.++..+|.+++++|++ +.++||+ +|.+++.|+|++.+++||++|+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~vLv-aT~~~~~Gldi~~v~~VI~~d~ 131 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE-GKKDVLV-ATDVASKGLDFPAIQHVINYDM 131 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH-TSCSEEE-ECHHHHTTCCCCCCSEEEESSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCEEEE-EcCchhcCCCcccCCEEEEeCC
Confidence 4589999999999999999999999999999999999999999999998 6777776 5699999999999999999999
Q ss_pred CCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+||+....|++||++|.|++.. ++.|+...
T Consensus 132 p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 132 PEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp CSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred CCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 9999999999999999999764 44566654
No 52
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.58 E-value=8.8e-15 Score=159.75 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=106.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccc
Q 001094 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 468 (1159)
Q Consensus 389 l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 468 (1159)
....|++||..++.++++. ..+||+.++|+|||+++++++...
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~~~------------------------------ 132 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 132 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHHHS------------------------------
T ss_pred CCCCcCHHHHHHHHHHHhC-------CCEEEEeCCCCCHHHHHHHHHHHc------------------------------
Confidence 3468999999999987632 338999999999999998887541
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCCCh
Q 001094 469 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLS-VLVYHGSSRTKDP 546 (1159)
Q Consensus 469 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~-Vlvy~G~~r~~~~ 546 (1159)
.+++|||||. .|+.||.+++.+ + .++ +..++|....
T Consensus 133 ----------------------------------~~~~liv~P~~~L~~q~~~~~~~-~----~~~~v~~~~g~~~~--- 170 (237)
T 2fz4_A 133 ----------------------------------STPTLIVVPTLALAEQWKERLGI-F----GEEYVGEFSGRIKE--- 170 (237)
T ss_dssp ----------------------------------CSCEEEEESSHHHHHHHHHHHGG-G----CGGGEEEESSSCBC---
T ss_pred ----------------------------------CCCEEEEeCCHHHHHHHHHHHHh-C----CCCeEEEEeCCCCC---
Confidence 1358999999 588999999998 4 366 8888886542
Q ss_pred hhcCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccC
Q 001094 547 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 626 (1159)
Q Consensus 547 ~~l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~ 626 (1159)
..+|+|+||+.+.....
T Consensus 171 ----~~~i~v~T~~~l~~~~~----------------------------------------------------------- 187 (237)
T 2fz4_A 171 ----LKPLTVSTYDSAYVNAE----------------------------------------------------------- 187 (237)
T ss_dssp ----CCSEEEEEHHHHHHTHH-----------------------------------------------------------
T ss_pred ----cCCEEEEeHHHHHhhHH-----------------------------------------------------------
Confidence 46899999999864210
Q ss_pred CCcccceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCC
Q 001094 627 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 674 (1159)
Q Consensus 627 ~L~~i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~ 674 (1159)
...-.|++||+||||++.+... .+.+..+.+.++++|||||..++
T Consensus 188 -~~~~~~~llIiDEaH~l~~~~~--~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 188 -KLGNRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp -HHTTTCSEEEEECSSCCCTTTH--HHHHHTCCCSEEEEEEESCC---
T ss_pred -HhcccCCEEEEECCccCCChHH--HHHHHhccCCEEEEEecCCCCCC
Confidence 0012478999999999987542 34455668899999999998765
No 53
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=4.5e-14 Score=146.58 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=94.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
++.|+|||+++...++.|...|...|+.+..++|+|+..+|..+++.|++ +.++||+ +|.+++.|+|++.+++||++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~-g~~~vLv-aT~~~~~Gid~~~~~~Vi~~d 110 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD-GKEKVLI-TTNVCARGIDVKQVTIVVNFD 110 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT-TSCSEEE-ECCSCCTTTCCTTEEEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EecchhcCCCcccCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999997 6778777 569999999999999999999
Q ss_pred CCC------CcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 LWW------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~~W------NP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
++| ++....|++||++|.|+. -.++.|+..+.
T Consensus 111 ~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 111 LPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred CCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 995 556788999999999964 45677777665
No 54
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.25 E-value=1.7e-15 Score=156.72 Aligned_cols=104 Identities=23% Similarity=0.331 Sum_probs=96.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.|+|||+++...++.|...|...|+.+..++|+|+..+|.+++++|++ +.+.||+ +|.+++.|+|++.+++||++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~-g~~~vLv-aT~~~~~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE-GRVNVLV-ATDVAARGIDIPDVSHVFNFD 106 (170)
Confidence 46799999999999999999999999999999999999999999999997 6777766 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEE
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V 1108 (1159)
++|++....|++||++|.||+..+.+
T Consensus 107 ~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 107 MPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 99999999999999999999776533
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.47 E-value=2e-13 Score=146.49 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=98.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+......+.|...|...|+.+..++|+++..+|+++++.|++ +..+||+ +|.+++.|+|+..+++||++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~~~vlv-aT~~~~~Gidi~~v~~Vi~~~ 107 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ-GEVRVLV-ATDVAARGLDIPQVDLVVHYR 107 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS-SSCCEEE-ECTTTTCSSSCCCBSEEEESS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC-CCCeEEE-ecChhhcCCCCccCcEEEECC
Confidence 56799999999999999999999999999999999999999999999998 6778877 669999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
++|++....|++||++|.|+.. .++.|+...
T Consensus 108 ~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 108 LPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp CCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred CCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 9999999999999999999764 455566554
No 56
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.43 E-value=5.2e-13 Score=158.58 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=83.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCE------
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH------ 1077 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~------ 1077 (1159)
+.++|||+......+.+...|...+++...++|. +|++++++|.+ +.++||+ +|.+.+.|+|+. ..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~-g~~~vLV-aT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS-EKWDFVI-TTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH-SCCSEEE-ECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC-CCCeEEE-ECchHHcCcccC-CcEEEecCc
Confidence 4589999999999999999999999999999997 58899999998 7788877 669999999998 544
Q ss_pred -----------EEEecCCCCcChhhHHhhhhcccCCCC
Q 001094 1078 -----------VLLLDLWWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1078 -----------VI~lD~~WNP~~e~QAigR~hRiGQtk 1104 (1159)
||+++.+.++....|++||++|.|...
T Consensus 244 ~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 244 TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp EEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 577889999999999999999999544
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.39 E-value=2.5e-12 Score=153.59 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=84.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec-
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD- 1082 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD- 1082 (1159)
+.++|||+......+.+...|...|+....++|.+ ++++++.|.+ +..+||+ +|.+++.|+|+.. ++||.+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~-g~~~vLV-aT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKL-TDWDFVV-TTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGS-SCCSEEE-ECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhcc-CCceEEE-ECCHHHhCcCCCC-CEEEECCC
Confidence 45899999999999999999999999999999975 4678999987 7788877 6699999999999 9999988
Q ss_pred -------------------CCCCcChhhHHhhhhcccCCCCc
Q 001094 1083 -------------------LWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1083 -------------------~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
++.++....|++||++|.|....
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g 302 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 302 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCCCc
Confidence 88899999999999999997443
No 58
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=138.15 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=79.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccc
Q 001094 390 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 469 (1159)
Q Consensus 390 ~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 469 (1159)
..+|++||.+++.++++. +.+|+...+|.|||+.++..+...-.
T Consensus 31 ~~~l~~~Q~~~i~~~~~~-------~~~li~~~tGsGKT~~~~~~~~~~~~----------------------------- 74 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG-------KNIIICLPTGSGKTRVAVYIAKDHLD----------------------------- 74 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT-------CCEEEECSCHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCchHHHHHHHHHHhcC-------CCEEEEcCCCCCHHHHHHHHHHHHHh-----------------------------
Confidence 357999999999998831 45899999999999999877654100
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCCCh-
Q 001094 470 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQ-WAEELRNKVTSKGSLSVLVYHGSSRTKDP- 546 (1159)
Q Consensus 470 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~Q-W~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~- 546 (1159)
..........+|||||.. |+.| |.+++.++... .+++..++|.......
T Consensus 75 --------------------------~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~ 126 (216)
T 3b6e_A 75 --------------------------KKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISF 126 (216)
T ss_dssp --------------------------HHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCH
T ss_pred --------------------------hcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhH
Confidence 000011234699999995 7788 99999988753 5788888887654432
Q ss_pred -hhcCCCCEEEechhhHhhc
Q 001094 547 -CELAKFDVVITTYSIVSME 565 (1159)
Q Consensus 547 -~~l~~~DVVItTY~~l~~e 565 (1159)
.....++|+|+|++.+...
T Consensus 127 ~~~~~~~~i~v~T~~~l~~~ 146 (216)
T 3b6e_A 127 PEVVKSCDIIISTAQILENS 146 (216)
T ss_dssp HHHHHHCSEEEEEHHHHHHH
T ss_pred HhhccCCCEEEECHHHHHHH
Confidence 2234689999999999653
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.38 E-value=1.6e-11 Score=152.37 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=92.6
Q ss_pred EEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhc-CCCceEEEeeccccccccCccccCEEEEecC--
Q 001094 1007 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLGLNMVAACHVLLLDL-- 1083 (1159)
Q Consensus 1007 vIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~-d~~~~VLLlStkagg~GLNL~~A~~VI~lD~-- 1083 (1159)
.|||+.....++.+...|...++.+..++|+|+.++|.++++.|++ ++..+||+ +|.+++.|||+ .+++||++++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLV-ATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV-ATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEE-ECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEE-eCcHHHCCcCc-CccEEEECCccc
Confidence 3677888999999999999999999999999999999999999997 34577777 66999999999 9999999999
Q ss_pred ------------CCCcChhhHHhhhhcccCCC-CcEEEEEEEeC
Q 001094 1084 ------------WWNPTTEDQAIDRAHRIGQT-RPVSVLRLTVK 1114 (1159)
Q Consensus 1084 ------------~WNP~~e~QAigR~hRiGQt-k~V~V~rLv~~ 1114 (1159)
++++....|++||++|.|+. .+-.++++..+
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88899999999999999987 34667766544
No 60
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.38 E-value=2.6e-12 Score=137.83 Aligned_cols=164 Identities=17% Similarity=0.127 Sum_probs=109.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.++|||.+++.++++. +.+|++..+|.|||+.++..+...-.
T Consensus 36 ~~~~~Q~~~i~~~~~~-------~~~li~~~TGsGKT~~~~~~~~~~~~------------------------------- 77 (220)
T 1t6n_A 36 HPSEVQHECIPQAILG-------MDVLCQAKSGMGKTAVFVLATLQQLE------------------------------- 77 (220)
T ss_dssp CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHCC-------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCchhhhhhHHHHHhhh-------------------------------
Confidence 3799999999998842 44899999999999988766654210
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh-hhc
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CEL 549 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~l 549 (1159)
.......+|||||. .|..||.+++.++....+.+++.+++|....... ..+
T Consensus 78 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 78 ---------------------------PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp ---------------------------CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH
T ss_pred ---------------------------ccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH
Confidence 00112358999998 5889999999988654346889999886543221 112
Q ss_pred --CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCC
Q 001094 550 --AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627 (1159)
Q Consensus 550 --~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~ 627 (1159)
...+|+|+|++.+...+.. ..
T Consensus 131 ~~~~~~i~v~T~~~l~~~~~~---------------------------------------------------------~~ 153 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALARN---------------------------------------------------------KS 153 (220)
T ss_dssp HHSCCSEEEECHHHHHHHHHT---------------------------------------------------------TS
T ss_pred hcCCCCEEEeCHHHHHHHHHh---------------------------------------------------------CC
Confidence 3569999999998643210 00
Q ss_pred CcccceeEEEEccCcccCCc-h--hHHHHHHHhcc-cCcEEEEeccCCCCChHHH
Q 001094 628 LAKVGWFRVVLDEAQSIKNH-R--TQVARACWGLR-AKRRWCLSGTPIQNAIDDL 678 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IKN~-~--S~~~ral~~L~-a~~RwlLTGTPiqN~l~DL 678 (1159)
+..-.+.+||+||||++... . ....+.+..+. ..+.++|||||-.+ +.++
T Consensus 154 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~ 207 (220)
T 1t6n_A 154 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE-IRPV 207 (220)
T ss_dssp SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTT-THHH
T ss_pred CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHH-HHHH
Confidence 11224678999999998542 1 22333333443 45789999999544 4444
No 61
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.36 E-value=3.9e-12 Score=143.36 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=96.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+......+.|...|...|+....++|.++..+|+++++.|++ +..+||+ +|.+++.|+|+..+++||++|
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~-g~~~vLV-aT~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ-GEVRVLV-ATDVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH-TSCCEEE-ECSTTTCSTTCCCCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc-CCceEEE-EechhhcCccccceeEEEEcC
Confidence 47899999999999999999999999999999999999999999999998 6788877 569999999999999999999
Q ss_pred CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
++|++....|++||++|.|+.. .++.|+....
T Consensus 105 ~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 105 MPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp CCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred CCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 9999999999999999999764 5556666653
No 62
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.35 E-value=3.7e-12 Score=134.96 Aligned_cols=164 Identities=22% Similarity=0.155 Sum_probs=108.9
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.++|||++++.++++ .+..|+...+|.|||+.++..+...-..
T Consensus 23 ~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~l~~------------------------------ 65 (207)
T 2gxq_A 23 TPTPIQAAALPLALE-------GKDLIGQARTGTGKTLAFALPIAERLAP------------------------------ 65 (207)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCC------------------------------
T ss_pred CCCHHHHHHHHHHcC-------CCCEEEECCCCChHHHHHHHHHHHHHhh------------------------------
Confidence 589999999999884 2458999999999999865555432100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh--hh
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CE 548 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~~ 548 (1159)
.........+|||||. .|..||.+++.++.. .+++..++|....... ..
T Consensus 66 -------------------------~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 2gxq_A 66 -------------------------SQERGRKPRALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEAL 117 (207)
T ss_dssp -------------------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHH
T ss_pred -------------------------ccccCCCCcEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHh
Confidence 0000123459999999 588999999999875 4788888886543221 11
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
...++|+|+|++.+...+.. ..+
T Consensus 118 ~~~~~i~v~T~~~l~~~~~~---------------------------------------------------------~~~ 140 (207)
T 2gxq_A 118 LRGADAVVATPGRALDYLRQ---------------------------------------------------------GVL 140 (207)
T ss_dssp HHCCSEEEECHHHHHHHHHH---------------------------------------------------------TSS
T ss_pred hCCCCEEEECHHHHHHHHHc---------------------------------------------------------CCc
Confidence 24689999999998643210 001
Q ss_pred cccceeEEEEccCcccCCc--hhHHHHHHHhcc-cCcEEEEeccCCCCChHHH
Q 001094 629 AKVGWFRVVLDEAQSIKNH--RTQVARACWGLR-AKRRWCLSGTPIQNAIDDL 678 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~--~S~~~ral~~L~-a~~RwlLTGTPiqN~l~DL 678 (1159)
.--.|.+||+||||++.+. .......+..+. ..+.+++||||- +.+.++
T Consensus 141 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 141 DLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp CCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC-HHHHHH
T ss_pred chhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC-HHHHHH
Confidence 1224678999999987432 344444444554 456799999984 334443
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.34 E-value=5.8e-12 Score=136.37 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.+++||.+++..++. .+..|+...+|.|||+..+..++..-.
T Consensus 46 ~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~------------------------------- 87 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC-------GLDLIVQAKSGTGKTCVFSTIALDSLV------------------------------- 87 (230)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCC-------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHH-------------------------------
Confidence 489999999998873 245799999999999986444332100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-Chhhc
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL 549 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~l 549 (1159)
.......+|||||. .|..||.+++.++......+++.+++|..... ....+
T Consensus 88 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 88 ---------------------------LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp ---------------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred ---------------------------hcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 00112358999998 58999999999886543368898898865432 22334
Q ss_pred CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCc
Q 001094 550 AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 629 (1159)
Q Consensus 550 ~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~ 629 (1159)
...+|+|+|++.+...+.. ..+.
T Consensus 141 ~~~~Iiv~Tp~~l~~~~~~---------------------------------------------------------~~~~ 163 (230)
T 2oxc_A 141 KKCHIAVGSPGRIKQLIEL---------------------------------------------------------DYLN 163 (230)
T ss_dssp TSCSEEEECHHHHHHHHHT---------------------------------------------------------TSSC
T ss_pred cCCCEEEECHHHHHHHHhc---------------------------------------------------------CCcc
Confidence 6789999999998643210 0011
Q ss_pred ccceeEEEEccCcccCC---chhHHHHHHHhcc-cCcEEEEeccC
Q 001094 630 KVGWFRVVLDEAQSIKN---HRTQVARACWGLR-AKRRWCLSGTP 670 (1159)
Q Consensus 630 ~i~w~rVIlDEAH~IKN---~~S~~~ral~~L~-a~~RwlLTGTP 670 (1159)
.-.+.+||+||||++.. ........+..+. ..+.++||||+
T Consensus 164 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 164 PGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred cccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 23567899999999843 3344445555564 55689999996
No 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.33 E-value=1.2e-11 Score=147.19 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=77.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE--
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-- 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~-- 1080 (1159)
.+.++|||+......+.+...|...+++...++| ++|++++++|.+ +++.||+ +|.+.+.|+|+. +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~-g~~~vLV-aT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ-KKPDFIL-ATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC---------CCCSEEE-ESSSTTCCTTCC-CSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC-CCceEEE-ECChhheeeccC-ceEEEeCC
Confidence 3569999999999999999999999999999999 468999999998 7788877 669999999999 999985
Q ss_pred -----------------ecCCCCcChhhHHhhhhcccCCCC
Q 001094 1081 -----------------LDLWWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1081 -----------------lD~~WNP~~e~QAigR~hRiGQtk 1104 (1159)
++.+.++....|++||+.|.|...
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 899999999999999999985433
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.32 E-value=1.2e-11 Score=132.91 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=102.0
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.|+|||..++.+++.. +..|+...+|.|||++.+..++..-.
T Consensus 36 ~~~~~Q~~~i~~~~~~-------~~~lv~~pTGsGKT~~~~~~~l~~l~------------------------------- 77 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEG-------HDVLAQAQSGTGKTGTFSIAALQRID------------------------------- 77 (224)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHCC-------------------------------
T ss_pred CCcHHHHHHHHHHhcC-------CCEEEECCCCCcHHHHHHHHHHHHHh-------------------------------
Confidence 4899999999988732 45899999999999985433332100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-Chhhc
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL 549 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~l 549 (1159)
.......+|||||.. |..||.+++.++.... .+++..++|..... ....+
T Consensus 78 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 129 (224)
T 1qde_A 78 ---------------------------TSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL 129 (224)
T ss_dssp ---------------------------TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C
T ss_pred ---------------------------ccCCCceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcC
Confidence 001123589999995 8899999999876533 67888888765433 33345
Q ss_pred CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCc
Q 001094 550 AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 629 (1159)
Q Consensus 550 ~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~ 629 (1159)
...+|+|+|++.+...+.. ..+.
T Consensus 130 ~~~~iiv~Tp~~l~~~~~~---------------------------------------------------------~~~~ 152 (224)
T 1qde_A 130 RDAQIVVGTPGRVFDNIQR---------------------------------------------------------RRFR 152 (224)
T ss_dssp TTCSEEEECHHHHHHHHHT---------------------------------------------------------TSSC
T ss_pred CCCCEEEECHHHHHHHHHh---------------------------------------------------------CCcc
Confidence 5689999999998643210 0011
Q ss_pred ccceeEEEEccCcccCC--chhHHHHHHHhcc-cCcEEEEeccCC
Q 001094 630 KVGWFRVVLDEAQSIKN--HRTQVARACWGLR-AKRRWCLSGTPI 671 (1159)
Q Consensus 630 ~i~w~rVIlDEAH~IKN--~~S~~~ral~~L~-a~~RwlLTGTPi 671 (1159)
.-.+.+||+||||++.. ......+.+..+. ..+.++||||+-
T Consensus 153 ~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 153 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred hhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 22467899999998753 2333444444553 456899999984
No 66
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.32 E-value=8.9e-12 Score=132.01 Aligned_cols=158 Identities=17% Similarity=0.113 Sum_probs=107.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.|+|||.+++..++. .+..|+...+|.|||+.++..++....
T Consensus 25 ~~~~~Q~~~i~~~~~-------~~~~lv~apTGsGKT~~~~~~~~~~~~------------------------------- 66 (206)
T 1vec_A 25 KPSPIQEESIPIALS-------GRDILARAKNGTGKSGAYLIPLLERLD------------------------------- 66 (206)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCSSSTTHHHHHHHHHHHCC-------------------------------
T ss_pred CCCHHHHHHHHHHcc-------CCCEEEECCCCCchHHHHHHHHHHHhc-------------------------------
Confidence 589999999998873 255899999999999887655543210
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh--hh
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CE 548 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~~ 548 (1159)
.......+|||||.. |..||.+++.++....+.+++..++|....... ..
T Consensus 67 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 119 (206)
T 1vec_A 67 ---------------------------LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL 119 (206)
T ss_dssp ---------------------------TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT
T ss_pred ---------------------------ccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc
Confidence 001123589999985 789999999988765446888888886543211 11
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
...++|+|+|++.+...+.. ..+
T Consensus 120 ~~~~~i~v~T~~~l~~~~~~---------------------------------------------------------~~~ 142 (206)
T 1vec_A 120 DDTVHVVIATPGRILDLIKK---------------------------------------------------------GVA 142 (206)
T ss_dssp TSCCSEEEECHHHHHHHHHT---------------------------------------------------------TCS
T ss_pred CCCCCEEEeCHHHHHHHHHc---------------------------------------------------------CCc
Confidence 24689999999998643210 001
Q ss_pred cccceeEEEEccCcccCCch--hHHHHHHHhcc-cCcEEEEeccCC
Q 001094 629 AKVGWFRVVLDEAQSIKNHR--TQVARACWGLR-AKRRWCLSGTPI 671 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~~--S~~~ral~~L~-a~~RwlLTGTPi 671 (1159)
..-.+.+||+||||.+.... ....+.+..+. ....+++|||+-
T Consensus 143 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred CcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 12246789999999886532 33334444454 567899999983
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.31 E-value=5e-12 Score=160.05 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=94.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh-----------CCCcEEecCCCCCHHHHHHHHHHHhc----CCCceEEEeeccccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD-----------SSIQYRRLDGTMSVFARDKAVKDFNT----LPEVSVMIMSLKAAS 1067 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~-----------~gi~~~rldGs~s~~~R~~~v~~F~~----d~~~~VLLlStkagg 1067 (1159)
.+.++|||+.-...++.+...|.. .++.+..++|+++.++|.++++.|.. .+..+||| +|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV-AT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI-STNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE-ECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE-eCcHHH
Confidence 467999999999999999888874 57889999999999999999999981 26677766 669999
Q ss_pred cccCccccCEEEEecC------------------CCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCH
Q 001094 1068 LGLNMVAACHVLLLDL------------------WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117 (1159)
Q Consensus 1068 ~GLNL~~A~~VI~lD~------------------~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TI 1117 (1159)
.|||+....+||.++. |.+.....|++||++|. ++=.+|+|+.+...
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999666 77888899999999998 45567888865544
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.30 E-value=5.4e-12 Score=136.91 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.+++||..++.+++. .+..|+...+|.|||+..+..++..-.
T Consensus 47 ~~~~~Q~~~i~~~~~-------~~~~li~a~TGsGKT~~~~~~~l~~l~------------------------------- 88 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ-------GKDVLGAAKTGSGKTLAFLVPVLEALY------------------------------- 88 (236)
T ss_dssp BCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEEeCCCCcHHHHHHHHHHHHHH-------------------------------
Confidence 579999999999883 245899999999999987654432100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-Chhhc
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL 549 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~-sLl~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~l 549 (1159)
+. .....+...+|||||. .|..||.+++.++... ..+++..++|..... ....+
T Consensus 89 --~~---------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~ 144 (236)
T 2pl3_A 89 --RL---------------------QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHEAERI 144 (236)
T ss_dssp --HT---------------------TCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT-SSCCEEEECCC--CHHHHHHH
T ss_pred --hh---------------------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCC-CCeeEEEEECCCCHHHHHHhC
Confidence 00 0000112358999999 5889999999987653 357888888865433 23445
Q ss_pred CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCCc
Q 001094 550 AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 629 (1159)
Q Consensus 550 ~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L~ 629 (1159)
..++|+|+|++.+...+.. . ..+.
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~----------------~----------------------------------------~~~~ 168 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDE----------------T----------------------------------------VSFH 168 (236)
T ss_dssp TTCSEEEECHHHHHHHHHH----------------C----------------------------------------SSCC
T ss_pred CCCCEEEECHHHHHHHHHh----------------c----------------------------------------CCcc
Confidence 6899999999999643210 0 0022
Q ss_pred ccceeEEEEccCcccCCc--hhHHHHHHHhcc-cCcEEEEeccCC
Q 001094 630 KVGWFRVVLDEAQSIKNH--RTQVARACWGLR-AKRRWCLSGTPI 671 (1159)
Q Consensus 630 ~i~w~rVIlDEAH~IKN~--~S~~~ral~~L~-a~~RwlLTGTPi 671 (1159)
.-.|.+||+||||++.+. .......+..+. ...+++||||+-
T Consensus 169 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 169 ATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp CTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred cccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 235679999999998643 344555555564 445899999974
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.30 E-value=8.5e-12 Score=155.27 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=84.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE--
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-- 1080 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~-- 1080 (1159)
.+.++|||+......+.+...|...++....++|. +|+++++.|.+ +.++||+ +|.+++.|||+. +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~-g~~~VLV-aTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN-GDWDFVI-TTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT-CCCSEEE-ECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC-CCceEEE-ECchhhcceeeC-CcEEEECC
Confidence 46799999999999999999999999999999994 79999999998 7788877 669999999999 999997
Q ss_pred ------------------ecCCCCcChhhHHhhhhcccCCCC
Q 001094 1081 ------------------LDLWWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1081 ------------------lD~~WNP~~e~QAigR~hRiGQtk 1104 (1159)
+|++.++....|++||++|.|...
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 567788889999999999994333
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.29 E-value=4.2e-12 Score=152.00 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=87.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE---
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL--- 1080 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~--- 1080 (1159)
+.++|||+......+.+...|...++....++|. +|.++++.|.+ +..+||| +|.+++.|+|+.. ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~-g~~~iLV-aT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN-GDWDFVI-TTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS-CCCSEEE-ESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC-CCceEEE-ECChHHhCeecCC-CEEEECCc
Confidence 5689999999999999999999999999999995 78889999987 6778877 6699999999998 99998
Q ss_pred -----------------ecCCCCcChhhHHhhhhcccCCCCcEEEEEEEeCC
Q 001094 1081 -----------------LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1081 -----------------lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~ 1115 (1159)
+|+|.++....|++||++|.|.... ..+.|+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 7899999999999999999996333 334555554
No 71
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.28 E-value=1.3e-11 Score=132.53 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=107.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.+++||.+++.+++.. +..|+...+|.|||+..+..++..-.
T Consensus 26 ~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~~~~l~~l~------------------------------- 67 (219)
T 1q0u_A 26 KPTEIQERIIPGALRG-------ESMVGQSQTGTGKTHAYLLPIMEKIK------------------------------- 67 (219)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCSSHHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHH-------------------------------
Confidence 4799999999998852 44799999999999986555443110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCC---CcEEEEEeCCCCCCC-h
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKG---SLSVLVYHGSSRTKD-P 546 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~---~l~Vlvy~G~~r~~~-~ 546 (1159)
.......+|||||.. |..||.+++.++....+ .+++..++|...... .
T Consensus 68 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 120 (219)
T 1q0u_A 68 ---------------------------PERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 120 (219)
T ss_dssp ---------------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT
T ss_pred ---------------------------hCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH
Confidence 001123589999985 88999999998765321 467777777643221 1
Q ss_pred hh-cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCccccccc
Q 001094 547 CE-LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVA 625 (1159)
Q Consensus 547 ~~-l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~ 625 (1159)
.. ...++|+|+|++.+...+..
T Consensus 121 ~~~~~~~~Iiv~Tp~~l~~~l~~--------------------------------------------------------- 143 (219)
T 1q0u_A 121 EKLNVQPHIVIGTPGRINDFIRE--------------------------------------------------------- 143 (219)
T ss_dssp CCCSSCCSEEEECHHHHHHHHHT---------------------------------------------------------
T ss_pred HHcCCCCCEEEeCHHHHHHHHHc---------------------------------------------------------
Confidence 11 13689999999998643210
Q ss_pred CCCcccceeEEEEccCcccCCc--hhHHHHHHHhcc-cCcEEEEeccCCCCChHHH
Q 001094 626 GPLAKVGWFRVVLDEAQSIKNH--RTQVARACWGLR-AKRRWCLSGTPIQNAIDDL 678 (1159)
Q Consensus 626 ~~L~~i~w~rVIlDEAH~IKN~--~S~~~ral~~L~-a~~RwlLTGTPiqN~l~DL 678 (1159)
..+..-.+.+||+||||.+.+. .....+.+..+. ...++++|||+ .+.+.++
T Consensus 144 ~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 144 QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 0011224678999999998643 334445555554 45689999997 3444443
No 72
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.26 E-value=2.7e-11 Score=149.07 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=82.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEE---
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL--- 1079 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI--- 1079 (1159)
.+.++|||+......+.+...|.+.++....++|+++.++ |.. ...+||+ +|.+++.|||+. .++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~-~~~~VLV-ATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT-IGDVVVV-ATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS-SSCEEEE-ECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh-CCCcEEE-ECChHHccCCCC-CcEEEecC
Confidence 4679999999999999999999999999999999998764 343 3346655 679999999985 99888
Q ss_pred -------Eec-----------CCCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCH
Q 001094 1080 -------LLD-----------LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117 (1159)
Q Consensus 1080 -------~lD-----------~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TI 1117 (1159)
+|| .+-++....||+||+.| |..- . +.|+.++..
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~ 516 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGER 516 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCB
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchh
Confidence 455 67777889999999999 6543 3 677776643
No 73
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.24 E-value=5.7e-11 Score=146.79 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=87.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEE-----
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV----- 1078 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~V----- 1078 (1159)
+.++|||+......+.+...|...+++...++|. +|.+++++|.+ +..+||+ +|.+++.|||+. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~-g~~~VLV-aTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL-TDWDFVV-TTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH-SCCSEEE-ECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC-CCcEEEE-ECcHHHcCcccC-ceEEEECcc
Confidence 5689999999999999999999999999999985 78899999988 6777877 669999999996 8888
Q ss_pred ---------------EEecCCCCcChhhHHhhhhcccCCCCcEEEEEEEe
Q 001094 1079 ---------------LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV 1113 (1159)
Q Consensus 1079 ---------------I~lD~~WNP~~e~QAigR~hRiGQtk~V~V~rLv~ 1113 (1159)
|++|++-++....|++||+.|.|..... .+.|+.
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 6667777888899999999999864443 455554
No 74
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.23 E-value=3.7e-10 Score=153.16 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=65.5
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE----ecC------CCCcChhhHHhhhhcc
Q 001094 1030 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LDL------WWNPTTEDQAIDRAHR 1099 (1159)
Q Consensus 1030 ~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~----lD~------~WNP~~e~QAigR~hR 1099 (1159)
.+..++|+++..+|..+.+.|.+ +.++||++| .+.+.|+||.+-..||. +|. +.++....|++||++|
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~-G~i~VLvaT-~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSS-GAIQVVVAS-RSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHH-TSBCEEEEE-GGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred CEEEECCCCCHHHHHHHHHHHHC-CCCeEEEEC-hHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 45668999999999999999998 889998855 88999999986555442 221 3456778899999999
Q ss_pred cCCCCcEEEEEEEeCC
Q 001094 1100 IGQTRPVSVLRLTVKN 1115 (1159)
Q Consensus 1100 iGQtk~V~V~rLv~~~ 1115 (1159)
.|....=.++.++...
T Consensus 1293 ~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTTCSCEEEEEEEEGG
T ss_pred CCCCCceEEEEEecch
Confidence 9987666666565543
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.21 E-value=5.2e-11 Score=129.51 Aligned_cols=157 Identities=19% Similarity=0.098 Sum_probs=101.3
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.|++||..++..++.. +..|+...+|.|||+..+..++..-.
T Consensus 52 ~~~~~Q~~ai~~i~~~-------~~~li~apTGsGKT~~~~l~~l~~l~------------------------------- 93 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKG-------YDVIAQAQSGTGKTATFAISILQQLE------------------------------- 93 (237)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEECCCSSHHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCCcHHHHHHHHHHHHHH-------------------------------
Confidence 4799999999998732 44799999999999886555543110
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-Chhhc
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL 549 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~l 549 (1159)
.......+|||||.. |..||.+++.++.... .+++..+.|..... ....+
T Consensus 94 ---------------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l 145 (237)
T 3bor_A 94 ---------------------------IEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKL 145 (237)
T ss_dssp ---------------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-----------
T ss_pred ---------------------------hcCCCceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHH
Confidence 001123589999985 8899999999876533 46677766654332 22222
Q ss_pred --CCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCC
Q 001094 550 --AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 627 (1159)
Q Consensus 550 --~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~ 627 (1159)
..++|+|+|++.+...+.. ..
T Consensus 146 ~~~~~~Ilv~Tp~~l~~~l~~---------------------------------------------------------~~ 168 (237)
T 3bor_A 146 QAEAPHIVVGTPGRVFDMLNR---------------------------------------------------------RY 168 (237)
T ss_dssp --CCCSEEEECHHHHHHHHHT---------------------------------------------------------TS
T ss_pred hcCCCCEEEECHHHHHHHHHh---------------------------------------------------------CC
Confidence 3389999999988643210 00
Q ss_pred CcccceeEEEEccCcccC--CchhHHHHHHHhcc-cCcEEEEeccCC
Q 001094 628 LAKVGWFRVVLDEAQSIK--NHRTQVARACWGLR-AKRRWCLSGTPI 671 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IK--N~~S~~~ral~~L~-a~~RwlLTGTPi 671 (1159)
+..-.+.+||+||||.+. +........+..+. ....+++|||+-
T Consensus 169 ~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 169 LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred cCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 111236789999999873 34455555666664 456789999984
No 76
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.21 E-value=6e-11 Score=130.16 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=76.8
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.++|||..++.+++.. +..|+...+|.|||+..+..++..-... .
T Consensus 45 ~~~~~Q~~~i~~i~~~-------~~~l~~a~TGsGKT~~~~~~~l~~l~~~--------------------~-------- 89 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEH-------RDIMACAQTGSGKTAAFLIPIINHLVCQ--------------------D-------- 89 (253)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHHHTT--------------------C--------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCCChHHHHHHHHHHHHHHhh--------------------c--------
Confidence 5899999999998842 4579999999999998765554310000 0
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh-hh-
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CE- 548 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~- 548 (1159)
.+. ..........+|||||.. |..||.+++.++.... .+++..++|....... ..
T Consensus 90 -~~~--------------------~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 147 (253)
T 1wrb_A 90 -LNQ--------------------QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV 147 (253)
T ss_dssp -C--------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH
T ss_pred -ccc--------------------ccccccCCceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh
Confidence 000 000011223699999995 8899999999886533 5777777776543321 22
Q ss_pred cCCCCEEEechhhHhh
Q 001094 549 LAKFDVVITTYSIVSM 564 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~ 564 (1159)
....+|+|+|++.+..
T Consensus 148 ~~~~~Ivv~Tp~~l~~ 163 (253)
T 1wrb_A 148 QMGCHLLVATPGRLVD 163 (253)
T ss_dssp SSCCSEEEECHHHHHH
T ss_pred CCCCCEEEECHHHHHH
Confidence 2468999999999964
No 77
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.20 E-value=7.7e-10 Score=137.52 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=84.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc--------c
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------A 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------~ 1074 (1159)
.+.++|||+......+.|...|...|+++..++|.+...+|+.+..+|+. ..|+| +|..+|.|++.. .
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~---g~VlI-ATdmAgRG~DI~l~~~V~~~g 506 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK---GAVTI-ATNMAGRGTDIKLGEGVKELG 506 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST---TCEEE-EETTSSTTCCCCCCTTSGGGT
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC---CeEEE-eCCccccCcCccccchhhhcC
Confidence 46789999999999999999999999999999999876666544444443 35655 669999999998 7
Q ss_pred cCEEEEecCCCCcChhhHHhhhhcccCCCC
Q 001094 1075 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~e~QAigR~hRiGQtk 1104 (1159)
..+||.+|.+-++..+.|++||..|.|..-
T Consensus 507 gl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 507 GLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp SEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred CcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 789999999999999999999999999754
No 78
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.19 E-value=4.6e-11 Score=131.14 Aligned_cols=158 Identities=20% Similarity=0.133 Sum_probs=105.8
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.+++||.+++..++. .+..|+...+|.|||++.+..++..-
T Consensus 65 ~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~il~~l-------------------------------- 105 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ-------GRDIIGLAETGSGKTGAFALPILNAL-------------------------------- 105 (249)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEEcCCCCCchhHhHHHHHHHH--------------------------------
Confidence 589999999999883 25589999999999998765553310
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh--hh
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CE 548 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~~ 548 (1159)
........+|||||.. |..||.+++.++.... .+++..++|....... ..
T Consensus 106 --------------------------~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 158 (249)
T 3ber_A 106 --------------------------LETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLAL 158 (249)
T ss_dssp --------------------------HHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHH
T ss_pred --------------------------hcCCCCceEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHh
Confidence 0001123589999995 7899999999876432 4778888876533211 12
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
....+|+|+|++.+...+.. .. .+
T Consensus 159 ~~~~~I~v~Tp~~l~~~l~~----------------~~----------------------------------------~~ 182 (249)
T 3ber_A 159 AKKPHIIIATPGRLIDHLEN----------------TK----------------------------------------GF 182 (249)
T ss_dssp HTCCSEEEECHHHHHHHHHH----------------ST----------------------------------------TC
T ss_pred cCCCCEEEECHHHHHHHHHc----------------CC----------------------------------------Cc
Confidence 35789999999998643210 00 01
Q ss_pred cccceeEEEEccCcccCCc--hhHHHHHHHhcc-cCcEEEEeccCC
Q 001094 629 AKVGWFRVVLDEAQSIKNH--RTQVARACWGLR-AKRRWCLSGTPI 671 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~--~S~~~ral~~L~-a~~RwlLTGTPi 671 (1159)
.--.+.+||+||||++.+. .....+.+..+. ....++||||+-
T Consensus 183 ~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 183 NLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp CCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred CccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 1224678999999987543 334445555553 567899999984
No 79
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.18 E-value=6.9e-10 Score=137.60 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=85.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcccc-------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA------- 1075 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A------- 1075 (1159)
.+..+|||+......+.|...|...|+++..++|.+...+|.-+..+|+. + .|+| +|..+|.|++....
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~-G--~VtI-ATnmAgRGtDI~l~gn~~~~~ 515 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP-A--AVTI-ATNMAGRGTDIVLGGSWQAEV 515 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST-T--CEEE-EESCCSSCSCCCTTCCHHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC-C--eEEE-ecccccCCcCccCCCchHhhh
Confidence 57789999999999999999999999999999999876666666667765 3 4666 66999999998752
Q ss_pred ------------------------------CEEEEecCCCCcChhhHHhhhhcccCCCCc
Q 001094 1076 ------------------------------CHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1076 ------------------------------~~VI~lD~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
.|||.+|.+-++..+.|++||.+|.|..-.
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 516 AALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp HHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred hhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 699999999999999999999999997543
No 80
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.17 E-value=7.8e-09 Score=128.46 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=83.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcccc-------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA------- 1075 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A------- 1075 (1159)
.+..+|||+......+.|...|...||++..++|.+...+|.-+..+|+. + .|+| +|..+|.|++....
T Consensus 459 ~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~-G--~VtI-ATnmAgRGtDI~l~~~~~~~~ 534 (922)
T 1nkt_A 459 KGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR-G--GVTV-ATNMAGRGTDIVLGGNVDFLT 534 (922)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST-T--CEEE-EETTCSTTCCCCTTCCHHHHH
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC-C--eEEE-ecchhhcCccccCCCCHHHHH
Confidence 57789999999999999999999999999999999865555445556654 2 5655 66999999998743
Q ss_pred ---------------------------------------------CEEEEecCCCCcChhhHHhhhhcccCCCC
Q 001094 1076 ---------------------------------------------CHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1104 (1159)
Q Consensus 1076 ---------------------------------------------~~VI~lD~~WNP~~e~QAigR~hRiGQtk 1104 (1159)
.|||.+|.+-++..+.|++||.+|.|..-
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG 608 (922)
T 1nkt_A 535 DQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPG 608 (922)
T ss_dssp HHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCE
T ss_pred HHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCe
Confidence 59999999999999999999999999754
No 81
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.10 E-value=2.9e-09 Score=144.44 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=68.7
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEE----ecCC------CCcChhhHHhhhhcc
Q 001094 1030 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LDLW------WNPTTEDQAIDRAHR 1099 (1159)
Q Consensus 1030 ~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~----lD~~------WNP~~e~QAigR~hR 1099 (1159)
.+...+|+++.++|..+-+.|.+ +.++||+ +|.+.+.|+||.+...||. +|+. .++....|++|||+|
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~-G~i~vlv-aTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFAD-KHIQVLV-STATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHT-TCCCEEE-ECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred CEEEEcCCCCHHHHHHHHHHHHC-CCCeEEE-EcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 45568999999999999999998 8899888 5599999999987666653 5543 356778899999999
Q ss_pred cCCCCcEEEEEEEeCCCHH
Q 001094 1100 IGQTRPVSVLRLTVKNTVE 1118 (1159)
Q Consensus 1100 iGQtk~V~V~rLv~~~TIE 1118 (1159)
.|.-..=.++.+...+..+
T Consensus 458 ~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCC
T ss_pred CCCCCccEEEEEecchhHH
Confidence 9986665666666665443
No 82
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.07 E-value=9.4e-10 Score=118.55 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=100.8
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.++|||..++..+++ .+..|+...+|.|||+.++..++..-... .
T Consensus 42 ~~~~~Q~~~i~~~~~-------~~~~l~~apTGsGKT~~~~l~~~~~l~~~---------------------~------- 86 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ-------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQ---------------------P------- 86 (228)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHC-------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhc---------------------c-------
Confidence 589999999998873 24579999999999988654443210000 0
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCC-Chhh-
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE- 548 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~- 548 (1159)
. .........+|||+|.. |..||.+++.++.. ..+++..++|..... ....
T Consensus 87 -~-----------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 140 (228)
T 3iuy_A 87 -I-----------------------SREQRNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDI 140 (228)
T ss_dssp ------------------------------CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHH
T ss_pred -c-----------------------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHh
Confidence 0 00011234589999997 78999999998753 257777777654433 2222
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
...++|+|+|.+.+...+.. ..+
T Consensus 141 ~~~~~iiv~Tp~~l~~~~~~---------------------------------------------------------~~~ 163 (228)
T 3iuy_A 141 SKGVDIIIATPGRLNDLQMN---------------------------------------------------------NSV 163 (228)
T ss_dssp HSCCSEEEECHHHHHHHHHT---------------------------------------------------------TCC
T ss_pred cCCCCEEEECHHHHHHHHHc---------------------------------------------------------CCc
Confidence 34689999999998642110 001
Q ss_pred cccceeEEEEccCcccCCc--hhHHHHHHHhcc-cCcEEEEeccC
Q 001094 629 AKVGWFRVVLDEAQSIKNH--RTQVARACWGLR-AKRRWCLSGTP 670 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~--~S~~~ral~~L~-a~~RwlLTGTP 670 (1159)
.--.+.+||+||||++.+. .....+.+..+. ....+++|||.
T Consensus 164 ~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 164 NLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp CCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred CcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 1223578999999987543 334444455554 45678899996
No 83
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=119.42 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.++|||..++..++. .+..|+...+|.|||+..+..++..-.
T Consensus 51 ~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~------------------------------- 92 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH-------GRELLASAPTGSGKTLAFSIPILMQLK------------------------------- 92 (245)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHC-------------------------------
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHh-------------------------------
Confidence 489999999998873 245799999999999986544432100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCC---CChh
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT---KDPC 547 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~---~~~~ 547 (1159)
........+|||+|.. |..||.+++.++.... .+++..++|.... ....
T Consensus 93 --------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 145 (245)
T 3dkp_A 93 --------------------------QPANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPK 145 (245)
T ss_dssp --------------------------SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTT
T ss_pred --------------------------hcccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhh
Confidence 0001123589999996 8899999999886533 4666666653211 1122
Q ss_pred hcCCCCEEEechhhHhh
Q 001094 548 ELAKFDVVITTYSIVSM 564 (1159)
Q Consensus 548 ~l~~~DVVItTY~~l~~ 564 (1159)
....++|+|+|.+.+..
T Consensus 146 ~~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 146 SSKKFDILVTTPNRLIY 162 (245)
T ss_dssp SCCCCCEEEECHHHHHH
T ss_pred hcCCCCEEEECHHHHHH
Confidence 23578999999999964
No 84
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.04 E-value=3.3e-08 Score=120.42 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=82.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCcc--------c
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------A 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~--------~ 1074 (1159)
.+.++|||+......+.|...|...|++...++|.....+|.-+..+|.. ..|+| +|..+|.|++.. .
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~---g~VtV-ATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK---GMVTI-ATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST---TCEEE-EETTTTTTCCCCCCTTTTTTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC---CeEEE-EcchhhCCcCccCCcchhhcC
Confidence 46799999999999999999999999999999999543333333344443 24655 669999999997 6
Q ss_pred cCEEEEecCCCCcChhhHHhhhhcccCCCCc
Q 001094 1075 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1105 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~e~QAigR~hRiGQtk~ 1105 (1159)
..+||.+|++-++..+.|++||+.|.|..-.
T Consensus 549 glhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp SCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred CCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 6799999999999999999999999997653
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=119.15 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=102.6
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.++|+|..++..++.. +..|+.-.+|.|||+.++..++..-.
T Consensus 76 ~~~~~Q~~~i~~~~~~-------~~~lv~a~TGsGKT~~~~l~~l~~l~------------------------------- 117 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEG-------RDLLAAAKTGSGKTLAFLIPAVELIV------------------------------- 117 (262)
T ss_dssp BCCHHHHHHHHHHHHT-------CCCEECCCTTSCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CcEEEEccCCCCchHHHHHHHHHHHH-------------------------------
Confidence 4899999999888752 34799999999999986544432100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh-hh-
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CE- 548 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~- 548 (1159)
+. .........+|||+|.. |..||.+++.++.... ...+..+.|....... ..
T Consensus 118 --~~---------------------~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 173 (262)
T 3ly5_A 118 --KL---------------------RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKL 173 (262)
T ss_dssp --HT---------------------TCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHH
T ss_pred --hc---------------------cccccCCceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHh
Confidence 00 00001123489999996 8899999999987543 4666677765432211 11
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
....+|+|+|.+.+...+.. .. .+
T Consensus 174 ~~~~~Iiv~Tp~~l~~~~~~----------------~~----------------------------------------~~ 197 (262)
T 3ly5_A 174 GNGINIIVATPGRLLDHMQN----------------TP----------------------------------------GF 197 (262)
T ss_dssp HHCCSEEEECHHHHHHHHHH----------------CT----------------------------------------TC
T ss_pred cCCCCEEEEcHHHHHHHHHc----------------cC----------------------------------------Cc
Confidence 23589999999988542210 00 01
Q ss_pred cccceeEEEEccCcccCCc--hhHHHHHHHhcc-cCcEEEEeccCC
Q 001094 629 AKVGWFRVVLDEAQSIKNH--RTQVARACWGLR-AKRRWCLSGTPI 671 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~--~S~~~ral~~L~-a~~RwlLTGTPi 671 (1159)
.--.+.+||+||||++-.. .....+.+..+. ....++||||+-
T Consensus 198 ~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 198 MYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp CCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred ccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 1113468999999987542 334444455553 456799999984
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.88 E-value=4.2e-09 Score=114.74 Aligned_cols=161 Identities=15% Similarity=0.063 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.++|||..++..++.. +..|+.-.+|.|||+..+..++..-.
T Consensus 51 ~~~~~Q~~~i~~~~~g-------~~~l~~apTGsGKT~~~~l~~l~~l~------------------------------- 92 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSG-------LDMVGVAQTGSGKTLSYLLPAIVHIN------------------------------- 92 (242)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEEECTTSCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCHHHHHHHHHHhCC-------CCEEEECCCcCHHHHHHHHHHHHHHH-------------------------------
Confidence 4789999999988742 34789999999999986544432100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCh-hh-
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CE- 548 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~- 548 (1159)
.. ..........+|||||.. |..||.+++.++.... .+++..++|....... ..
T Consensus 93 ---~~-------------------~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 93 ---HQ-------------------PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp ---TS-------------------CCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHH
T ss_pred ---hc-------------------cccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHh
Confidence 00 000001223589999997 7899999998876432 5777777776433221 11
Q ss_pred cCCCCEEEechhhHhhccCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCCccCCCCCCCCCCcccccccCCC
Q 001094 549 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 628 (1159)
Q Consensus 549 l~~~DVVItTY~~l~~e~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~~~~~L 628 (1159)
...++|+|+|.+.+...+.. ..+
T Consensus 150 ~~~~~I~v~Tp~~l~~~l~~---------------------------------------------------------~~~ 172 (242)
T 3fe2_A 150 ERGVEICIATPGRLIDFLEC---------------------------------------------------------GKT 172 (242)
T ss_dssp HHCCSEEEECHHHHHHHHHH---------------------------------------------------------TSC
T ss_pred cCCCCEEEECHHHHHHHHHc---------------------------------------------------------CCC
Confidence 23589999999998643210 001
Q ss_pred cccceeEEEEccCcccCCc--hhHHHHHHHhc-ccCcEEEEeccC
Q 001094 629 AKVGWFRVVLDEAQSIKNH--RTQVARACWGL-RAKRRWCLSGTP 670 (1159)
Q Consensus 629 ~~i~w~rVIlDEAH~IKN~--~S~~~ral~~L-~a~~RwlLTGTP 670 (1159)
.--.+.+||+||||.+-.. .......+..+ .....+++|||+
T Consensus 173 ~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 173 NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp CCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred CcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 1123568999999987542 33344444455 345678999996
No 87
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.78 E-value=3.5e-08 Score=123.09 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=97.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+....+.+.|...|...|++...++|.++..+|.+++++|.. +.+.||+ +|.+++.|+|+..++.||++|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~-g~~~VLv-aT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL-GHYDCLV-GINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT-TSCSEEE-ESCCCCTTCCCTTEEEEEETT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc-CCceEEE-ccChhhcCccCCCCCEEEEeC
Confidence 57899999999999999999999999999999999999999999999987 7777776 669999999999999999999
Q ss_pred C-----CCCcChhhHHhhhhcccCCCCcEEEEEEEeCCC
Q 001094 1083 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1116 (1159)
Q Consensus 1083 ~-----~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~T 1116 (1159)
. ++++....|++||++|.|. -.++.|+...+
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred CcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 8 8999999999999999863 24555666655
No 88
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.75 E-value=5.6e-08 Score=121.19 Aligned_cols=110 Identities=23% Similarity=0.260 Sum_probs=97.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1082 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD 1082 (1159)
.+.++|||+......+.|...|...|++...++|.++..+|.+++++|.. +.+.||+ +|...+.|+++..++.||++|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~-g~~~VLV-aT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL-GKYDVLV-GINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH-TSCSEEE-ESCCCSTTCCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc-CCeEEEE-ecchhhCCcccCCCCEEEEeC
Confidence 57899999999999999999999999999999999999999999999997 6777776 669999999999999999999
Q ss_pred C-----CCCcChhhHHhhhhcccCCCCcEEEEEEEeCCCH
Q 001094 1083 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1117 (1159)
Q Consensus 1083 ~-----~WNP~~e~QAigR~hRiGQtk~V~V~rLv~~~TI 1117 (1159)
. ++++....|++||++|-+ .-.++.|+...+.
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred cccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 8 899999999999999972 3345556766653
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.74 E-value=9.7e-08 Score=107.61 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.+.++|..++..++.. ..+..|+.-.+|.|||+..+.-++..-.
T Consensus 114 ~pt~iQ~~ai~~il~~-----~~~~~l~~a~TGsGKT~a~~lp~l~~l~------------------------------- 157 (300)
T 3fmo_B 114 RPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVE------------------------------- 157 (300)
T ss_dssp SCCHHHHHHHHHHTSS-----SCCCEEEECCTTSSHHHHHHHHHHHHCC-------------------------------
T ss_pred CCCHHHHHHHHHHHcC-----CCCeEEEECCCCCCccHHHHHHHHHhhh-------------------------------
Confidence 4789999999887631 1144788899999999976433332100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcC
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 550 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~ 550 (1159)
.......+|||||.. |..|+.+++.++....+.+++..+.|....... ...
T Consensus 158 ---------------------------~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (300)
T 3fmo_B 158 ---------------------------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKI 209 (300)
T ss_dssp ---------------------------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-CCC
T ss_pred ---------------------------ccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-hcC
Confidence 001112489999997 789999999887654346788888776543322 245
Q ss_pred CCCEEEechhhHhh
Q 001094 551 KFDVVITTYSIVSM 564 (1159)
Q Consensus 551 ~~DVVItTY~~l~~ 564 (1159)
..+|||+|.+.+..
T Consensus 210 ~~~IlV~TP~~l~~ 223 (300)
T 3fmo_B 210 SEQIVIGTPGTVLD 223 (300)
T ss_dssp CCSEEEECHHHHHH
T ss_pred CCCEEEECHHHHHH
Confidence 67999999999864
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.07 E-value=5.4e-05 Score=94.28 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=38.0
Q ss_pred cEEEEeChhhH----HHHHHHHHHhcCCCCCcEEEEEeCCCCCCChhhcCCCCEEEechhhHh
Q 001094 505 GTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 563 (1159)
Q Consensus 505 ~tLIV~P~sLl----~QW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~DVVItTY~~l~ 563 (1159)
.++||+|+--| ..|...+-+++ .+++.+..|.............||++.|...|.
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l----GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlg 180 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL----GLSVGVIQHASTPAERRKAYLADVTYVTNSELG 180 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT----TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHH
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc----CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhh
Confidence 48999999854 44666666655 588888777644322223346899999988884
No 91
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=5.1e-06 Score=71.34 Aligned_cols=52 Identities=25% Similarity=0.612 Sum_probs=44.6
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchh
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 892 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf 892 (1159)
...|+||.+...+++.++|||.||..|+..++......||. |+..+....+|
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~~~if 66 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTA--CQESIVKDKVF 66 (66)
T ss_dssp CEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTT--TCCCCCTTTCC
T ss_pred CCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCC--CCcCCChhhcC
Confidence 46799999999999999999999999999999866778997 88877665543
No 92
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.81 E-value=2.7e-05 Score=94.81 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEe-eccccccccCccc----cCE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM-SLKAASLGLNMVA----ACH 1077 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLl-Stkagg~GLNL~~----A~~ 1077 (1159)
.+.++|||......++.+...|.. ++ +...|.. .+|++++++|.. +. .||++ .+...++|+|+.. +..
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~-~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKT-GK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHT-SC-CEEEEEC---------------CEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhc-CC-eEEEEEecCceecceecCCCcccccE
Confidence 466899999999999999888865 33 3445554 468999999988 33 45542 5689999999996 788
Q ss_pred EEEecCCCCcC
Q 001094 1078 VLLLDLWWNPT 1088 (1159)
Q Consensus 1078 VI~lD~~WNP~ 1088 (1159)
||++.+|+-+.
T Consensus 456 Vii~~lPf~~~ 466 (540)
T 2vl7_A 456 LVLAGLPYPNV 466 (540)
T ss_dssp EEEESCCCCCT
T ss_pred EEEECCCCCCC
Confidence 99999887444
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.79 E-value=5.7e-05 Score=92.18 Aligned_cols=75 Identities=8% Similarity=0.076 Sum_probs=48.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCC-CCCHHHHHHHHHHHhcCCCceEEEeec-cccccccCcc-----cc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDG-TMSVFARDKAVKDFNTLPEVSVMIMSL-KAASLGLNMV-----AA 1075 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldG-s~s~~~R~~~v~~F~~d~~~~VLLlSt-kagg~GLNL~-----~A 1075 (1159)
.+..+|||.....+++.+.. ..+++... .| +++ +.++++.|...++ .||+... ....+|+|+. .+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~-q~~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g~~l 463 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYV-ESEDSS---VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDRSLI 463 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEE-CCSSCC---HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTEESE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEE-cCCCCC---HHHHHHHHHhcCC-eEEEEEecceecccccccccCCcce
Confidence 34577777777777777665 23444433 33 334 5667888864343 5666542 6889999999 46
Q ss_pred CEEEEecCCC
Q 001094 1076 CHVLLLDLWW 1085 (1159)
Q Consensus 1076 ~~VI~lD~~W 1085 (1159)
..||+.-+|+
T Consensus 464 ~~viI~~lPf 473 (551)
T 3crv_A 464 SDVVIVGIPY 473 (551)
T ss_dssp EEEEEESCCC
T ss_pred eEEEEEcCCC
Confidence 7788887776
No 94
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.78 E-value=6.6e-05 Score=81.05 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~ 436 (1159)
.+++++|..++..+... +-.++.-.+|.|||......+.
T Consensus 60 ~p~~~~q~~~i~~i~~g-------~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 60 LPVKKFESEILEAISQN-------SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SGGGGGHHHHHHHHHHC-------SEEEEECCTTSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC-------CEEEEEeCCCCCcHHhHHHHHh
Confidence 56899999999988742 2257888999999976655443
No 95
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.75 E-value=1.4e-05 Score=71.00 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=42.2
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+...+|++++|||.||..||..++......||. |+..+..
T Consensus 8 ~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~--C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPK--SQETLLH 55 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTT--TCCBCSS
T ss_pred cCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCC--CcCCCCh
Confidence 46799999999999999999999999999999876788997 7776554
No 96
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=1.3e-05 Score=74.17 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=43.4
Q ss_pred cccccCCCCCCccchhcc-cCccchhhhHHhhhhcC-----CCCCCCcccccc-ccccc
Q 001094 839 LAICGICNDPPEDAVVSI-CGHVFCNQCICERLTAD-----DNQCPTRNCKIR-LSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~-CgH~~C~~Ci~~~l~~~-----~~~Cp~~~c~~~-~~~~~ 890 (1159)
...|+||.+.+.+||+++ |||.||..||..++... ...||...|+.. +....
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 367999999999999995 99999999999999753 468999889865 54433
No 97
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.62 E-value=2.4e-05 Score=73.10 Aligned_cols=50 Identities=34% Similarity=0.701 Sum_probs=43.5
Q ss_pred cccccCCCCCCccchh-cccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDAVV-SICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i-~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+...+|+. +.|||.||..||..++......||. |+..+....
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~--Cr~~~~~~~ 72 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPH--CRAPLQLRE 72 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTT--TCCBCCGGG
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCC--CCCcCCHHH
Confidence 3679999999999998 9999999999999999887788997 888775543
No 98
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=3e-05 Score=67.71 Aligned_cols=49 Identities=35% Similarity=0.675 Sum_probs=41.5
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhc--CCCCCCCcccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA--DDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~--~~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+...++++.+|||.||..|+..++.. ....||. |+..+...
T Consensus 20 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~ 70 (73)
T 2ysl_A 20 EVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL--CKTSVRKN 70 (73)
T ss_dssp CCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSS--SCCCCCCC
T ss_pred CCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCC--CCCcCCcc
Confidence 4679999999999999999999999999999973 4568987 88766543
No 99
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.55 E-value=2.6e-05 Score=72.90 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=40.5
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+.+.+||+++|||.||..||..++.. ...||. |+..+..
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~--~~~~l~~ 75 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPF--NRQTLTE 75 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSS--SCCBCCT
T ss_pred hhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCC--CCCCCCh
Confidence 4689999999999999999999999999999984 578987 6665544
No 100
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.54 E-value=2.5e-05 Score=70.72 Aligned_cols=48 Identities=19% Similarity=0.045 Sum_probs=41.1
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+.+.+||+++|||.||..||..++.. ...||. |+..+...
T Consensus 14 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 14 EFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPF--NRQMLTES 61 (85)
T ss_dssp TTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTT--TCCBCCGG
T ss_pred heECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCC--CcCCCChH
Confidence 4689999999999999999999999999999985 578987 66655543
No 101
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.52 E-value=3.1e-05 Score=68.72 Aligned_cols=50 Identities=28% Similarity=0.670 Sum_probs=42.5
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcC------CCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD------DNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~------~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+...+|+.++|||.||..|+..++... ...||. |+..+....
T Consensus 12 ~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~ 67 (79)
T 2egp_A 12 EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEH 67 (79)
T ss_dssp CCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSG
T ss_pred CCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhh
Confidence 46799999999999999999999999999998763 568987 888776543
No 102
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.51 E-value=4.2e-05 Score=74.33 Aligned_cols=47 Identities=23% Similarity=0.636 Sum_probs=41.9
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
..|+||.+...+|+.++|||.||..|+..++......||. |+..+..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPA--CRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTT--TCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCC--CCccCCC
Confidence 5899999999999999999999999999999877779997 8876654
No 103
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=5.3e-05 Score=66.13 Aligned_cols=49 Identities=33% Similarity=0.767 Sum_probs=41.2
Q ss_pred cccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+...+++.. +|||.||..|+..++.. ...||. |+..+....
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~--Cr~~~~~~~ 64 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPK--CNIVVHQTQ 64 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTT--TCCCCCSSC
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCC--cCcccCccc
Confidence 46799999999999875 99999999999999965 578997 888766543
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.48 E-value=2.7e-05 Score=86.30 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=44.0
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchh
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 892 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf 892 (1159)
...|+||.+.+.+||+++|||.||..||..++......||. |+..+....++
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~--~~~~~~~~~l~ 259 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPV--TRSPLTQEQLI 259 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTT--TCCCCCGGGCE
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcC--CCCCCchhcCc
Confidence 46799999999999999999999999999999876556987 88877655443
No 105
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.47 E-value=6.1e-05 Score=66.16 Aligned_cols=46 Identities=39% Similarity=0.854 Sum_probs=39.6
Q ss_pred cccccCCCCCCccchhcc-cCccchhhhHHhhhhcC-CCCCCCccccccc
Q 001094 839 LAICGICNDPPEDAVVSI-CGHVFCNQCICERLTAD-DNQCPTRNCKIRL 886 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~-CgH~~C~~Ci~~~l~~~-~~~Cp~~~c~~~~ 886 (1159)
...|+||.+...+|+.++ |||.||..||..++... ...||. |+..+
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPT--CHQND 62 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSS--SCCSS
T ss_pred CCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCC--CCCcC
Confidence 367999999999999999 99999999999999754 368997 87753
No 106
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.46 E-value=4e-05 Score=71.29 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=40.5
Q ss_pred cccccCCCCCCccchhcccC-ccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICG-HVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~Cg-H~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+.+.+||+++|| |.||..||..++.. ...||. |+..+..
T Consensus 22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~--~~~~l~~ 69 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPF--NRSPLTM 69 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTT--TCSBCCT
T ss_pred hcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCC--CCCCCCh
Confidence 46899999999999999999 99999999999986 568987 6665544
No 107
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.45 E-value=5.6e-05 Score=76.04 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=42.8
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+...+|++++|||.||..|+..++......||. |+..+...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTT--TCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCC--CCccCCCC
Confidence 35799999999999999999999999999999876678997 88766543
No 108
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.44 E-value=6e-05 Score=67.60 Aligned_cols=49 Identities=27% Similarity=0.763 Sum_probs=41.9
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcC-----CCCCCCcccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD-----DNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~-----~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+...++++++|||.||..|+..++... ...||. |+..+...
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPV--CRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTT--TCCCCCTT
T ss_pred CCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCC--CCCcCCHH
Confidence 35799999999999999999999999999998763 568986 88876654
No 109
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.43 E-value=4.5e-05 Score=65.09 Aligned_cols=49 Identities=27% Similarity=0.703 Sum_probs=39.5
Q ss_pred ccccCCCC-CCccc----hhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 840 AICGICND-PPEDA----VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 840 ~~C~iC~~-~~~~~----~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
..|+||.+ ...++ ++++|||.||..|+..++......||. |+..+....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~~~ 57 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPE--CGTPLRKSN 57 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTT--TCCCCSSCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCC--CCCcccccc
Confidence 57999999 55555 468999999999999998777778997 888766543
No 110
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=5.1e-05 Score=66.02 Aligned_cols=49 Identities=24% Similarity=0.551 Sum_probs=41.6
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+...+++.++|||.||..|+..++... ..||. |+..+....
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~--Cr~~~~~~~ 63 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCAL--CRQEIPEDF 63 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSS--SCCBCCHHH
T ss_pred CCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcC--cCchhCHhh
Confidence 46799999999999999999999999999988654 78987 888766543
No 111
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.41 E-value=6.4e-05 Score=74.52 Aligned_cols=46 Identities=33% Similarity=0.726 Sum_probs=39.8
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
..|+||.+...+|++++|||.||..|+..|+.. ...||. |+..+..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~--Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPI--CRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTT--TCCBCCC
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCC--CCCcCCC
Confidence 479999999999999999999999999998864 567997 8876643
No 112
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=6.8e-05 Score=67.00 Aligned_cols=46 Identities=30% Similarity=0.668 Sum_probs=39.9
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|+||.+...++++++|||.||..|+..++.. ...||. |+..+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYI--CDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSS--SCCBCC
T ss_pred CCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCC--cCcccc
Confidence 4679999999999999999999999999999965 568987 777654
No 113
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=8.6e-05 Score=66.56 Aligned_cols=50 Identities=26% Similarity=0.715 Sum_probs=42.3
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhc-----CCCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA-----DDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~-----~~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+...+++..+|||.||..|+..++.. ....||. |+..+....
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~~ 73 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPV--CRISYQPEN 73 (85)
T ss_dssp CCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTT--TCCSSCSSS
T ss_pred CCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCC--CCCccCHHh
Confidence 4679999999999999999999999999998875 3678987 888776543
No 114
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=8.2e-05 Score=63.03 Aligned_cols=41 Identities=37% Similarity=0.690 Sum_probs=36.0
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhc--CCCCCCC
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA--DDNQCPT 879 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~--~~~~Cp~ 879 (1159)
...|+||.+...+|++++|||.||..|+..++.. ....||.
T Consensus 20 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 20 EVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred CCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 4679999999999999999999999999999975 4557875
No 115
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.35 E-value=5.1e-05 Score=73.10 Aligned_cols=52 Identities=31% Similarity=0.633 Sum_probs=45.0
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchh
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 892 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf 892 (1159)
...|+||.+...+|+.++|||.||..|+..++......||. |+..+....++
T Consensus 18 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~~~~~ 69 (118)
T 3hct_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV--DNEILLENQLF 69 (118)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTT--TCCBCCGGGCE
T ss_pred CCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCC--CCCCcCHHhcc
Confidence 35799999999999999999999999999999877679997 88877765544
No 116
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.34 E-value=6.3e-05 Score=77.44 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=41.4
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+.+.+||+++|||.||..||..++......||. |+..+...
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~--t~~~l~~~ 154 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPV--TRSPLTQD 154 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT--TCCBCCGG
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCC--CcCCCChh
Confidence 46899999999999999999999999999999865446887 66665543
No 117
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.34 E-value=0.00011 Score=69.79 Aligned_cols=48 Identities=31% Similarity=0.795 Sum_probs=40.8
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCC--CCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADD--NQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~--~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+...+++.++|||.||..|+..++.... ..||. |+..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPL--CKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTT--TSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcC--CCCcCCH
Confidence 358999999999999999999999999999998643 57887 8776654
No 118
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=9.5e-05 Score=66.93 Aligned_cols=49 Identities=27% Similarity=0.690 Sum_probs=41.7
Q ss_pred cccccCCCCCCcc----chhcccCccchhhhHHhhhhcC--CCCCCCcccccccccc
Q 001094 839 LAICGICNDPPED----AVVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~----~~i~~CgH~~C~~Ci~~~l~~~--~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+...+ +++.+|||.||..|+..++... ...||. |+..+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF--CSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTT--TCCCBCCS
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCC--CCCcccch
Confidence 4679999999887 8889999999999999999865 568987 88876654
No 119
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.32 E-value=9.6e-05 Score=70.83 Aligned_cols=49 Identities=31% Similarity=0.679 Sum_probs=42.9
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~ 889 (1159)
...|+||.+...+|+.++|||.||..|+..++......||. |+..+...
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPS--CRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTT--TCCBCCGG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCC--CCCCCCHh
Confidence 35799999999999999999999999999999877778997 88766554
No 120
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.31 E-value=6.9e-05 Score=64.94 Aligned_cols=50 Identities=38% Similarity=0.889 Sum_probs=41.1
Q ss_pred ccccccCCCCCCccc-------hhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 838 SLAICGICNDPPEDA-------VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~-------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
....|+||.+...++ ++.+|||.||..|+..++... ..||. |+..+....
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~--Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPT--CRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTT--TCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCC--CCCccChhh
Confidence 356899999988776 788999999999999998755 68987 887766543
No 121
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.31 E-value=6.4e-05 Score=63.63 Aligned_cols=49 Identities=39% Similarity=0.933 Sum_probs=40.5
Q ss_pred cccccCCCCCCccc-------hhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDA-------VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~-------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+...++ ++++|||.||..|+..++.. ...||. |+..+....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~--Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPT--CRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTT--TCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCC--CCccCCccc
Confidence 35799999988776 78899999999999999976 568987 887766543
No 122
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00013 Score=60.37 Aligned_cols=41 Identities=34% Similarity=0.802 Sum_probs=35.7
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhc--CCCCCCC
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA--DDNQCPT 879 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~--~~~~Cp~ 879 (1159)
...|+||.+...++++++|||.||..|+..++.. ....||.
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred CCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 4679999999999999999999999999999764 4567875
No 123
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.27 E-value=8.3e-05 Score=71.17 Aligned_cols=47 Identities=30% Similarity=0.717 Sum_probs=42.0
Q ss_pred ccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 840 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
..|+||.+...+|+.++|||.||..|+..++......||. |+..+..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPF--CRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTT--TCCBCHH
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCC--CCcccCc
Confidence 5799999999999999999999999999999877789997 8887654
No 124
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=9.8e-05 Score=63.48 Aligned_cols=47 Identities=40% Similarity=0.960 Sum_probs=39.0
Q ss_pred ccccccCCCCCCccc-------hhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 838 SLAICGICNDPPEDA-------VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~-------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
....|+||.+...++ ++.+|||.||..|+..++.. ...||. |+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPT--CRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTT--TCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCC--CCCccC
Confidence 346799999988776 78899999999999999876 568987 776554
No 125
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.25 E-value=0.00012 Score=74.65 Aligned_cols=47 Identities=34% Similarity=0.844 Sum_probs=41.4
Q ss_pred ccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 840 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
..|+||.+...+++.. +|||.||..|+..++......||. |+..+..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPT--CRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTT--TCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCC--CCCcCCC
Confidence 5799999999999877 999999999999999977788997 8876643
No 126
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.25 E-value=9.1e-05 Score=67.81 Aligned_cols=46 Identities=39% Similarity=0.854 Sum_probs=39.4
Q ss_pred cccccCCCCCCccchhcc-cCccchhhhHHhhhhcC-CCCCCCccccccc
Q 001094 839 LAICGICNDPPEDAVVSI-CGHVFCNQCICERLTAD-DNQCPTRNCKIRL 886 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~-CgH~~C~~Ci~~~l~~~-~~~Cp~~~c~~~~ 886 (1159)
...|+||.+...+|+.++ |||.||..|+..++... ...||. |+..+
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPT--CHQND 60 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTT--TCCSS
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcC--CCCcC
Confidence 357999999999999999 99999999999999654 468997 77654
No 127
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00011 Score=79.37 Aligned_cols=52 Identities=29% Similarity=0.523 Sum_probs=44.0
Q ss_pred cccccCCCCCCccchhc-ccCccchhhhHHhhhhcC-CCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLTAD-DNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~-~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+.+.+||.+ .|||.||..||..++... ...||..+|+..+....
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 36799999999999985 899999999999999753 45899988998766543
No 128
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.16 E-value=0.0002 Score=66.49 Aligned_cols=47 Identities=36% Similarity=0.786 Sum_probs=39.8
Q ss_pred cccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+...+|+.. +|||.||..|+..++.. ...||. |+..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~--Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPT--CCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTT--TCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCC--CCCcCCh
Confidence 35799999999999877 89999999999999974 468996 8876654
No 129
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.15 E-value=0.00021 Score=58.56 Aligned_cols=46 Identities=30% Similarity=0.573 Sum_probs=37.5
Q ss_pred ccccccCCCCCCcc----chhcccCccchhhhHHhhhhcCCCCCCCccccccc
Q 001094 838 SLAICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 886 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~----~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~ 886 (1159)
....|+||.+...+ +++.+|||.||..|+..++... ..||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~--Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPL--CSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTT--SCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCC--CCCcC
Confidence 34679999988754 6788999999999999999876 78987 76544
No 130
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.15 E-value=0.00027 Score=62.78 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=39.7
Q ss_pred cccccCCCCCCc--cchhcc--cCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 839 LAICGICNDPPE--DAVVSI--CGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~--~~~i~~--CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.++.. ++.+.+ |||.||..|+..++......||. |+..+....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~--CR~~~~~~~ 64 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPA--CRKPYPEDP 64 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTT--TCCBCSSCS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCC--CCCccCCCc
Confidence 467999999874 345554 99999999999998777788997 888776543
No 131
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.14 E-value=0.00021 Score=67.56 Aligned_cols=47 Identities=30% Similarity=0.706 Sum_probs=40.4
Q ss_pred cccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+...+|+.. +|||.||..|+..++... ..||. |+..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPI--CDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTT--TCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcC--CCccccc
Confidence 46899999999999987 999999999999998754 78997 8776654
No 132
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.13 E-value=0.0002 Score=61.56 Aligned_cols=47 Identities=30% Similarity=0.763 Sum_probs=39.0
Q ss_pred ccccccCCCCCCccc-hhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 838 SLAICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~-~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
....|+||.+...++ +..+|||.||..|+..++... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTT--TCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcC--CChhhH
Confidence 346799999998885 788999999999999988654 68987 877654
No 133
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.09 E-value=0.00029 Score=80.73 Aligned_cols=52 Identities=23% Similarity=0.773 Sum_probs=44.8
Q ss_pred ccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccch
Q 001094 838 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~v 891 (1159)
....|+||.+...++++++|||.||..|+..++......||. |+..+.....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~--CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF--CRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTT--TCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCC--CCCccCCcee
Confidence 346899999999999999999999999999998867789997 8887765543
No 134
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.07 E-value=0.00026 Score=67.92 Aligned_cols=44 Identities=27% Similarity=0.744 Sum_probs=38.7
Q ss_pred cccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|+||.+...+|+.+ +|||.||..|+..++. ..||. |+..+.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~--Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPV--CYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSS--SCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcC--CCCcCc
Confidence 46899999999999998 9999999999999987 77987 777653
No 135
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.98 E-value=0.00029 Score=58.31 Aligned_cols=45 Identities=24% Similarity=0.630 Sum_probs=37.0
Q ss_pred ccccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 838 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
....|+||.+...+|++++|||.||..|+.. ....||. |+..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPI--CQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSS--CCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCc--CCcEeec
Confidence 3467999999999999999999999999977 4567887 7765543
No 136
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00022 Score=61.63 Aligned_cols=45 Identities=31% Similarity=0.846 Sum_probs=38.3
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|+||.+...+ ++++|||.||..|+..++. ....||. |+..+.
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHH--HHHCTT
T ss_pred CCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCC--cCCccc
Confidence 4679999999888 8899999999999999887 5678886 876654
No 137
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.88 E-value=0.00045 Score=61.02 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=38.3
Q ss_pred cccccCCCCCCccc---hhcccCccchhhhHHhhhhcCCCCCCCccccccccccc
Q 001094 839 LAICGICNDPPEDA---VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 890 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~---~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~ 890 (1159)
...|+||.+....+ .+.+|+|.||..|+..|+... ..||. |+..+....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~--Cr~~~~~~~ 66 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPV--CRKSLTGQN 66 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTT--TCCCCCCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcC--cCCccCCcc
Confidence 46899998876544 456899999999999998654 68997 887765543
No 138
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.88 E-value=0.00064 Score=55.61 Aligned_cols=45 Identities=31% Similarity=0.704 Sum_probs=35.5
Q ss_pred cccccCCCCCCcc---chhcc-cCccchhhhHHhhhhcCCCCCCCccccccc
Q 001094 839 LAICGICNDPPED---AVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRL 886 (1159)
Q Consensus 839 ~~~C~iC~~~~~~---~~i~~-CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~ 886 (1159)
...|+||.+...+ ++..+ |||.||..|+..++.. ...||. |+..+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~--Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPL--CRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSS--SCCCS
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcC--CCCEe
Confidence 4579999988765 45555 9999999999999865 568987 77654
No 139
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.86 E-value=0.00039 Score=66.23 Aligned_cols=47 Identities=28% Similarity=0.537 Sum_probs=37.2
Q ss_pred ccccCCCCCCccch------------------hcccCccchhhhHHhhhhc----CCCCCCCccccccccc
Q 001094 840 AICGICNDPPEDAV------------------VSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~------------------i~~CgH~~C~~Ci~~~l~~----~~~~Cp~~~c~~~~~~ 888 (1159)
..|+||.+....+. +.+|+|.||..||..|+.. ....||. |+..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS--CKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTT--TCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCC--CCCccCC
Confidence 57999998775543 6789999999999999963 4568997 8876653
No 140
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.86 E-value=0.00029 Score=72.27 Aligned_cols=53 Identities=30% Similarity=0.624 Sum_probs=45.6
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccccccchhh
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFS 893 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~vf~ 893 (1159)
...|+||.+...+|+.++|||.||..|+..++......||. |+..+....++.
T Consensus 18 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 18 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV--DNEILLENQLFP 70 (170)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTT--TCCBCCGGGCEE
T ss_pred CCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCC--CccCcchhhhhh
Confidence 35799999999999999999999999999999876679997 888877765543
No 141
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.85 E-value=0.00022 Score=70.85 Aligned_cols=46 Identities=22% Similarity=0.658 Sum_probs=40.3
Q ss_pred cccccCCCCCCccchhcccCccchhhhHHhhhhcCCCCCCCccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 886 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~ 886 (1159)
...|+||.+...+|+.+.|||.||..||..++......||. |+..+
T Consensus 31 ~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~--Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAA--CVHEG 76 (141)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHH--HHHTT
T ss_pred CcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCC--CCCcc
Confidence 46799999999999999999999999999999876678986 77643
No 142
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.77 E-value=0.00074 Score=58.11 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=37.2
Q ss_pred ccccccCCCCCC---ccchhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 838 SLAICGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 838 ~~~~C~iC~~~~---~~~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
....|+||.+.. ..++..+|||.||..|+..|+... ..||. |+..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPI--CRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTT--TCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcC--cCccccC
Confidence 346799998765 345678999999999999998764 46987 8776543
No 143
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.66 E-value=0.00057 Score=59.97 Aligned_cols=48 Identities=27% Similarity=0.595 Sum_probs=37.8
Q ss_pred ccccccCCCCCCccc---hhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 838 SLAICGICNDPPEDA---VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~---~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
....|+||.+....+ ...+|+|.||..|+..|+... ..||. |+..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPI--CRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTT--TCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcC--cCCcCCC
Confidence 346799999776554 667899999999999998764 68987 8776543
No 144
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.0009 Score=58.42 Aligned_cols=46 Identities=22% Similarity=0.663 Sum_probs=36.2
Q ss_pred cccccCCCCCCccch---hcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPEDAV---VSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~---i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|+||.+....+. +.+|+|.||..|+..|+... ..||. |+..+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPL--CNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTT--TCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCC--cCcccc
Confidence 357999998876553 34899999999999999764 48987 876554
No 145
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.57 E-value=0.00077 Score=61.63 Aligned_cols=46 Identities=26% Similarity=0.576 Sum_probs=36.4
Q ss_pred cccccCCCCCCcc---chhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPED---AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~---~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|+||.+.... +...+|||.||..|+..|+.. ...||. |+..+.
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~--Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPV--CRCMFP 88 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTT--TCCBSS
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcC--cCccCC
Confidence 3579999877654 667789999999999999864 458987 876553
No 146
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.57 E-value=0.00083 Score=61.76 Aligned_cols=51 Identities=20% Similarity=0.488 Sum_probs=39.7
Q ss_pred cccccCCCCCCccchhc---ccCccchhhhHHhhhhcC-------CCCCCCcccccc--cccc
Q 001094 839 LAICGICNDPPEDAVVS---ICGHVFCNQCICERLTAD-------DNQCPTRNCKIR--LSLS 889 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~---~CgH~~C~~Ci~~~l~~~-------~~~Cp~~~c~~~--~~~~ 889 (1159)
...|+||.+....+... .|||.||..|+..++... ...||...|+.. +...
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 46799999987776543 699999999999998641 248999889987 5443
No 147
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.57 E-value=0.0007 Score=65.91 Aligned_cols=52 Identities=37% Similarity=0.855 Sum_probs=42.4
Q ss_pred hccccccCCCCCCccc-------hhcccCccchhhhHHhhhhcCCCCCCCccccccccccch
Q 001094 837 ASLAICGICNDPPEDA-------VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~-------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~v 891 (1159)
.....|+||.+...++ +.++|||.||..||..++... ..||. |+..+....+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~--Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPT--CRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTT--TCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCC--CCCcCccccc
Confidence 3457899999998887 889999999999999998754 58987 8887765443
No 148
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.55 E-value=0.00093 Score=58.59 Aligned_cols=43 Identities=33% Similarity=0.790 Sum_probs=36.9
Q ss_pred cccccCCCCCCccchhcccCcc-chhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|.||.+.+.+++..+|||. ||..|+..+ ..||. |+..+..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPM--CYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTT--TCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCC--cCcCccC
Confidence 3579999999999999999999 999999876 78887 8776543
No 149
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=57.63 Aligned_cols=43 Identities=33% Similarity=0.790 Sum_probs=35.9
Q ss_pred cccccCCCCCCccchhcccCcc-chhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|.||.+...++++.+|||. ||..|+... ..||. |+..+..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTT--TCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCcc--CCceecC
Confidence 3579999999999999999999 999999643 67887 8776543
No 150
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.46 E-value=0.001 Score=56.03 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=35.4
Q ss_pred ccccCCCCCCccchhc-ccCccchhhhHHhhhhcCCCCCCC
Q 001094 840 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPT 879 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~-~CgH~~C~~Ci~~~l~~~~~~Cp~ 879 (1159)
..|+||.+++.+|+++ .|||+||.+||.+|+... ..||.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~ 43 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPI 43 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTT
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcC
Confidence 5799999999999999 899999999999999764 46987
No 151
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.29 E-value=0.002 Score=54.56 Aligned_cols=48 Identities=29% Similarity=0.681 Sum_probs=38.9
Q ss_pred hccccccCCCCCCccchhc--ccCcc-chhhhHHhhhhcCCCCCCCcccccccc
Q 001094 837 ASLAICGICNDPPEDAVVS--ICGHV-FCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~~i~--~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
.....|.||.+.+.++++. +|||. +|..|+..+... ...||. |+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTT--TCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCC--cCchhh
Confidence 3456899999999888766 99998 999999987754 478997 877653
No 152
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.16 E-value=0.0025 Score=54.14 Aligned_cols=47 Identities=23% Similarity=0.690 Sum_probs=38.7
Q ss_pred ccccccCCCCCCccchhc--ccCcc-chhhhHHhhhhcCCCCCCCcccccccc
Q 001094 838 SLAICGICNDPPEDAVVS--ICGHV-FCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~--~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
....|.||.+.+.++++. +|||. +|..|+..++. ....||. |+..+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPi--CR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPV--CRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTT--TCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCC--cCcchh
Confidence 456899999999999876 99999 89999998875 3567997 877654
No 153
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.13 E-value=0.027 Score=69.83 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=33.2
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 388 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 388 ~l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
.+...|-+.|+.||...+... . =.|+.=-.|.|||.+.+.+|..
T Consensus 185 ~~~~~LN~~Q~~AV~~al~~~--~----~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 185 FFNTCLDTSQKEAVLFALSQK--E----LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp CSSTTCCHHHHHHHHHHHHCS--S----EEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHhcCC--C----ceEEECCCCCCHHHHHHHHHHH
Confidence 345578999999999988521 1 1467777999999998888754
No 154
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.0036 Score=55.81 Aligned_cols=47 Identities=32% Similarity=0.705 Sum_probs=35.9
Q ss_pred cccccCCCCCCcc--------------chh-cccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPED--------------AVV-SICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~--------------~~i-~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|+||.+...+ .++ ..|+|.|+..||..++... ..||. |+..+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~--CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPL--CQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTT--TCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCC--cCCCcch
Confidence 4569999877654 333 4599999999999999765 58997 8876654
No 155
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.89 E-value=0.0039 Score=53.72 Aligned_cols=45 Identities=24% Similarity=0.608 Sum_probs=37.4
Q ss_pred hccccccCCCCCCccchhcccCcc-chhhhHHhhhhcCCCCCCCccccccccc
Q 001094 837 ASLAICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~~i~~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
.....|.||.+.+.++++.+|||. ||..|+.. ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPM--CRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTT--TCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCC--CCcchhc
Confidence 345689999999999999999999 99999984 367887 8876543
No 156
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=95.87 E-value=0.0032 Score=55.91 Aligned_cols=43 Identities=26% Similarity=0.799 Sum_probs=36.6
Q ss_pred cccccCCCCCCccchhcccCcc-chhhhHHhhhhcCCCCCCCccccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
...|.||.+.+.++++.+|||. ||..|+..+. .||. |+..+..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTT--TCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCC--CCchhhC
Confidence 3579999999999999999999 9999998653 8887 8876654
No 157
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.36 E-value=0.078 Score=65.45 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
.|-+.|+.|+...+.. .-.++--..|.|||.++..++..
T Consensus 180 ~ln~~Q~~av~~~l~~-------~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp CCCHHHHHHHHHHHTC-------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC-------CCeEEECCCCCCHHHHHHHHHHH
Confidence 5889999999987731 22466667899999988777654
No 158
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.32 E-value=0.009 Score=56.16 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=36.4
Q ss_pred cccccCCCCCCccc------------------hhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPEDA------------------VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~------------------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|.||.+..+.+ +..+|+|.|+..||..++.. ...||. |+..+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPL--DNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSS--SCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcC--CCCcce
Confidence 35799998876644 34689999999999999876 578997 877654
No 159
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.23 E-value=0.0054 Score=59.50 Aligned_cols=52 Identities=37% Similarity=0.855 Sum_probs=41.5
Q ss_pred hccccccCCCCCCccc-------hhcccCccchhhhHHhhhhcCCCCCCCccccccccccch
Q 001094 837 ASLAICGICNDPPEDA-------VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 891 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~-------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~~~v 891 (1159)
.....|+||.+...++ +...|||.||..|+..++... ..||. |+..+....+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~--Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPT--CRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTT--TCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCC--CCCcCChhcc
Confidence 3457899999887765 778999999999999999754 58887 8877765543
No 160
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.93 E-value=0.0082 Score=68.32 Aligned_cols=42 Identities=29% Similarity=0.763 Sum_probs=36.9
Q ss_pred cccccCCCCCCccchhcccCcc-chhhhHHhhhhcCCCCCCCcccccccc
Q 001094 839 LAICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 839 ~~~C~iC~~~~~~~~i~~CgH~-~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
...|.||.+.+.+++..+|||. ||..|+..+ ..||. |+..+.
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~--CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPI--CRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTT--TCCBCC
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCC--CCCCcc
Confidence 4689999999999999999999 999999876 68987 887654
No 161
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.51 E-value=0.13 Score=65.02 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
..|-+.|+.|+...+.. +-.++---.|.|||.++.+++..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~-------~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp CCCCHHHHHHHHHHHTS-------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhccC-------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999987631 12466777899999988777654
No 162
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.16 Score=64.32 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=35.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHH----HHHHHHHHhcCCCceEEEeec
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFA----RDKAVKDFNTLPEVSVMIMSL 1063 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~----R~~~v~~F~~d~~~~VLLlSt 1063 (1159)
....+-|.+.|......|...|...+. + .... +-..++.|+. .+..|+|+|+
T Consensus 674 ~~~~IgVItpy~~Q~~~I~~~L~~~~~----l----~~~~~~~v~V~TVd~fQG-~E~dvVIlS~ 729 (802)
T 2xzl_A 674 KPEQIGVITPYEGQRAYILQYMQMNGS----L----DKDLYIKVEVASVDAFQG-REKDYIILSC 729 (802)
T ss_dssp CGGGEEEEESCHHHHHHHHHHHHHHCS----S----CHHHHHTSEEEEHHHHTT-CCEEEEEEEC
T ss_pred CcccEEEEcccHHHHHHHHHHHHHccc----c----ccccccceEEcchhhcCC-CccCEEEEEe
Confidence 345788999999999999999987543 1 1111 1124678876 5677777774
No 163
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=93.78 E-value=0.11 Score=62.82 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHH
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 435 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI 435 (1159)
.+++|||+..+.-+......+ +-+|+--.+|.|||+..+.-+
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~~~---~~~~~~a~TGtGKT~~~l~~~ 47 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALKHG---KTLLLNAKPGLGKTVFVEVLG 47 (540)
T ss_dssp ---CCHHHHHHHHHHHHHHTT---CEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC---CCEEEEcCCCCcHHHHHHHHH
Confidence 368999999876444322221 347888899999998664433
No 164
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=93.72 E-value=0.035 Score=50.72 Aligned_cols=46 Identities=28% Similarity=0.644 Sum_probs=38.6
Q ss_pred cccCCCCCCcc-chhcccCccchhhhHHhhhhcCCCCCCCccccccccc
Q 001094 841 ICGICNDPPED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 888 (1159)
Q Consensus 841 ~C~iC~~~~~~-~~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~~ 888 (1159)
.|+.|.-|... .-+.+|.|+||..|+..+....+..||. |+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~--C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPG--CSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTT--TCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcC--cCCeeee
Confidence 58899888654 4578999999999999999999999997 8776554
No 165
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.53 E-value=0.27 Score=59.86 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=31.1
Q ss_pred cceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCC
Q 001094 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 673 (1159)
Q Consensus 631 i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN 673 (1159)
..+++|||||||.+-. ......+..+....+++|.|-|-|.
T Consensus 278 ~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp CSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEEECTTSC
T ss_pred ccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEEeccccc
Confidence 3578999999999853 2344445556778899999999885
No 166
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=93.13 E-value=0.016 Score=55.28 Aligned_cols=45 Identities=27% Similarity=0.581 Sum_probs=0.0
Q ss_pred ccccCCCCCCccc------------------hhcccCccchhhhHHhhhhcCCCCCCCcccccccc
Q 001094 840 AICGICNDPPEDA------------------VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 887 (1159)
Q Consensus 840 ~~C~iC~~~~~~~------------------~i~~CgH~~C~~Ci~~~l~~~~~~Cp~~~c~~~~~ 887 (1159)
..|.||.+..+++ +..+|+|.|+..||..++.. ...||. |+..+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPL--DNREWE 111 (117)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCC--CCCeee
Confidence 5699998776542 22589999999999999976 578996 876543
No 167
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.02 E-value=0.76 Score=52.98 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 389 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 389 l~~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
..+.|.|||+..+..|... +-.++.=.-+.|||..+.++++.
T Consensus 160 ~p~~L~p~Qk~il~~l~~~-------R~~vi~~sRq~GKT~l~a~~~l~ 201 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSK-------RMTVCNLSRQLGKTTVVAIFLAH 201 (385)
T ss_dssp EECCCCHHHHHHHHHHHHS-------SEEEEEECSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhccC-------cEEEEEEcCcCChhHHHHHHHHH
Confidence 4568999999988877421 22577777899999877666543
No 168
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.38 E-value=0.1 Score=46.22 Aligned_cols=50 Identities=26% Similarity=0.642 Sum_probs=39.2
Q ss_pred ccccccCCCCCC--ccchhcccC-----ccchhhhHHhhhhcCC-CCCCCcccccccccc
Q 001094 838 SLAICGICNDPP--EDAVVSICG-----HVFCNQCICERLTADD-NQCPTRNCKIRLSLS 889 (1159)
Q Consensus 838 ~~~~C~iC~~~~--~~~~i~~Cg-----H~~C~~Ci~~~l~~~~-~~Cp~~~c~~~~~~~ 889 (1159)
....|.||.+.. .++++.+|. |.|...|+..|+.... ..||. |+..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCEL--CKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSS--SCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCC--CCCeeecC
Confidence 346899998754 456788996 9999999999998653 68998 88766543
No 169
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.56 E-value=1.8 Score=52.75 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=31.0
Q ss_pred CcccceeEEEEccCcccCCchhHHHHHHHh-cc--cCcEEEEeccCCCC
Q 001094 628 LAKVGWFRVVLDEAQSIKNHRTQVARACWG-LR--AKRRWCLSGTPIQN 673 (1159)
Q Consensus 628 L~~i~w~rVIlDEAH~IKN~~S~~~ral~~-L~--a~~RwlLTGTPiqN 673 (1159)
+.....+++|+||+|.+++.. ....++.. +. ...++++++||-..
T Consensus 269 lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 269 VRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred ccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 344556789999999998743 44444443 32 34789999999655
No 170
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.78 E-value=1.2 Score=54.76 Aligned_cols=43 Identities=26% Similarity=0.101 Sum_probs=33.0
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCCChH
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAID 676 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN~l~ 676 (1159)
.+++||||||+.+. .......+..+....+++|.|=|-|-.+-
T Consensus 262 ~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liLvGD~~QL~~V 304 (608)
T 1w36_D 262 HLDVLVVDEASMID--LPMMSRLIDALPDHARVIFLGDRDQLASV 304 (608)
T ss_dssp SCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred CCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEEEcchhhcCCC
Confidence 67899999999875 33445566677888999999999886543
No 171
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.83 E-value=6.5 Score=46.17 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
.|-+-|+.++..++..-.... +-.++--..|.|||..+.+++..
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~--~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKK--HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSS--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCC--CEEEEEeCCCCCHHHHHHHHHHH
Confidence 488999999997765422221 12466777899999887777654
No 172
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=86.59 E-value=1.3 Score=54.52 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=63.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee-ccccccccCcc--ccCEEEE
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS-LKAASLGLNMV--AACHVLL 1080 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS-tkagg~GLNL~--~A~~VI~ 1080 (1159)
+..++||...-.+++.+...|+ .+... ...+++..+|.+++++|. ++..||+.. ....++|+|+. .+..||+
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~--~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR--RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT--TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc--cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 4567888888888888888777 23333 444455678999999999 444567654 25889999997 5778888
Q ss_pred ecCCCCcC-----------------------------hhhHHhhhhcccCCCCcEEE
Q 001094 1081 LDLWWNPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1108 (1159)
Q Consensus 1081 lD~~WNP~-----------------------------~e~QAigR~hRiGQtk~V~V 1108 (1159)
.-+++-+. ...|++||+.|--.-+.|.+
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 77775321 12499999999766665544
No 173
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=83.76 E-value=0.92 Score=55.78 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
..||+|++.+.-..+.-..+ +-.|+.-.+|.|||+..|.-++...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~---~~~~~~apTGtGKT~a~l~p~l~~~-------------------------------- 47 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKS---YGVALESPTGSGKTIMALKSALQYS-------------------------------- 47 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHS---SEEEEECCTTSCHHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHhh--------------------------------
Confidence 46899999876444332221 3478899999999998765544310
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGS 540 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G~ 540 (1159)
.. ...+++|++|+. +..|+.+|+.+.... ..+++++..|.
T Consensus 48 -------------------------~~---~~~kvli~t~T~~l~~Qi~~el~~l~~~-~~~~~~~l~gr 88 (620)
T 4a15_A 48 -------------------------SE---RKLKVLYLVRTNSQEEQVIKELRSLSST-MKIRAIPMQGR 88 (620)
T ss_dssp -------------------------HH---HTCEEEEEESSHHHHHHHHHHHHHHHHH-SCCCEEECCCH
T ss_pred -------------------------hh---cCCeEEEECCCHHHHHHHHHHHHHHhhc-cCeEEEEEECC
Confidence 00 013589999997 789999999876432 25777776663
No 174
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=82.41 E-value=4 Score=47.78 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=27.5
Q ss_pred cceeEEEEccCcccCCchhHHHHHHHhcccCcEEEEeccCCCC
Q 001094 631 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 673 (1159)
Q Consensus 631 i~w~rVIlDEAH~IKN~~S~~~ral~~L~a~~RwlLTGTPiqN 673 (1159)
...++||+|||..+- .......+..+++ .+++|.|=|-|-
T Consensus 233 ~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 233 CQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred CcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 347899999999773 2333333344455 899999998774
No 175
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.95 E-value=4 Score=50.52 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
+++.+.|-.++.-+...-..+. +.-+|.--.|.|||+++.+++...
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~--~~~~l~g~tgs~kt~~~a~~~~~~-------------------------------- 52 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGE--RFVTLLGATGTGKTVTMAKVIEAL-------------------------------- 52 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHH--------------------------------
T ss_pred CCCCCCChHHHHHHHHHHhcCC--CcEEEEcCCCcHHHHHHHHHHHHh--------------------------------
Confidence 3577899999886665433211 113566779999999987777431
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEE
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVY 537 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy 537 (1159)
.+|+|||+|.. +..||..|+..+++. ..|..|
T Consensus 53 --------------------------------~~~~lvv~~~~~~A~ql~~el~~~~~~---~~V~~f 85 (664)
T 1c4o_A 53 --------------------------------GRPALVLAPNKILAAQLAAEFRELFPE---NAVEYF 85 (664)
T ss_dssp --------------------------------TCCEEEEESSHHHHHHHHHHHHHHCTT---SEEEEC
T ss_pred --------------------------------CCCEEEEecCHHHHHHHHHHHHHHCCC---CeEEEc
Confidence 13599999997 679999999998863 345444
No 176
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=77.63 E-value=5.7 Score=41.80 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=24.4
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEecc
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGT 669 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTGT 669 (1159)
.++.|||||||.+... .. ..+..| .....++++|-
T Consensus 101 ~~dvViIDEaQF~~~~--~V-~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD--IV-EVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTT--HH-HHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHH--HH-HHHHHHhhCCCEEEEEec
Confidence 4789999999998532 23 445554 34668888885
No 177
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=73.98 E-value=8.4 Score=47.57 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhccccccccccccccc
Q 001094 391 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 470 (1159)
Q Consensus 391 ~~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 470 (1159)
++...+|..++.-+...-..+. +...|.--.|.|||+.+.+++...
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~--~~~~l~g~~gs~k~~~~a~~~~~~-------------------------------- 56 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGK--KHQTLLGATGTGKTFTVSNLIKEV-------------------------------- 56 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHH--------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHhcCC--CcEEEECcCCcHHHHHHHHHHHHh--------------------------------
Confidence 3456799999886665433221 113566778999999887776431
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEe
Q 001094 471 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYH 538 (1159)
Q Consensus 471 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~ 538 (1159)
.+|+|||+|.. +..||..|+..+++. ..|..|-
T Consensus 57 --------------------------------~~~~lvv~~~~~~A~~l~~el~~~~~~---~~v~~fp 90 (661)
T 2d7d_A 57 --------------------------------NKPTLVIAHNKTLAGQLYSEFKEFFPN---NAVEYFV 90 (661)
T ss_dssp --------------------------------CCCEEEECSSHHHHHHHHHHHHHHCTT---SEEEEEC
T ss_pred --------------------------------CCCEEEEECCHHHHHHHHHHHHHHcCC---CcEEEcc
Confidence 13599999997 679999999998863 3555443
No 178
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=70.61 E-value=1.1 Score=50.00 Aligned_cols=49 Identities=29% Similarity=0.449 Sum_probs=35.8
Q ss_pred ccccccCCCCCCcc----ch----hcccCccchhhhHHhhhhcCC----------CCCCCccccccccc
Q 001094 838 SLAICGICNDPPED----AV----VSICGHVFCNQCICERLTADD----------NQCPTRNCKIRLSL 888 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~----~~----i~~CgH~~C~~Ci~~~l~~~~----------~~Cp~~~c~~~~~~ 888 (1159)
....|+||.....+ |. -..|+|.|-..|+.+|+..-. +.||. |+..+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 45789999865433 21 247999999999999996521 57996 8886654
No 179
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=64.65 E-value=1.2 Score=41.94 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=17.1
Q ss_pred CCcccccccccchhhhhhhhcccccccccccCCCcccccc
Q 001094 238 QPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQS 277 (1159)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (1159)
+.+.|...+++|+++.+||.++.+++..|.+.+|||++||
T Consensus 76 p~enL~~~~~~g~kklenY~kk~~e~~~~~~~~~~EdiE~ 115 (115)
T 2b2y_C 76 TEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEY 115 (115)
T ss_dssp CHHHHHHHTCBCTHHHHHHHC-------------------
T ss_pred CHHHcCCccchHHHHHHHHHHHHHHHHHhcCCCCHhhccC
Confidence 3456676789999999999889999999999999999975
No 180
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=62.50 E-value=42 Score=36.81 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=30.7
Q ss_pred ceeEEEEccCcccCCch--hHHHHHHHhcccCcEEEEeccCCCCChHHHHhchh
Q 001094 632 GWFRVVLDEAQSIKNHR--TQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR 683 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~--S~~~ral~~L~a~~RwlLTGTPiqN~l~DLyslL~ 683 (1159)
....|||||+|.+.+.. ....+.+.......++++|.++...-...|.+-+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 35689999999984211 22222233335677888888876644444555433
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.11 E-value=5 Score=43.95 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=17.2
Q ss_pred cceeecCCCCchhHHHHHHHH
Q 001094 416 GGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 416 GGILADemGLGKTlqaIAlI~ 436 (1159)
+-+|.-+.|.|||..+-++..
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468899999999988876654
No 182
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=53.06 E-value=7.9 Score=32.01 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=35.6
Q ss_pred ccccccCCCCCCccchhcccC--c---cchhhhHHhhhhc-CCCCCCCcccccccc
Q 001094 838 SLAICGICNDPPEDAVVSICG--H---VFCNQCICERLTA-DDNQCPTRNCKIRLS 887 (1159)
Q Consensus 838 ~~~~C~iC~~~~~~~~i~~Cg--H---~~C~~Ci~~~l~~-~~~~Cp~~~c~~~~~ 887 (1159)
....|.||.+...++++.+|. + .|=..|+..|+.. ....||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCC--CCCeee
Confidence 456899998776667788865 3 6667799999875 4578987 776554
No 183
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=50.06 E-value=7.1 Score=35.51 Aligned_cols=30 Identities=27% Similarity=0.834 Sum_probs=25.4
Q ss_pred cccccCCCCC-Cccchh--cccCccchhhhHHh
Q 001094 839 LAICGICNDP-PEDAVV--SICGHVFCNQCICE 868 (1159)
Q Consensus 839 ~~~C~iC~~~-~~~~~i--~~CgH~~C~~Ci~~ 868 (1159)
...|++|.+. ...++. ..|+|.||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 3579999964 677887 78999999999987
No 184
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=48.94 E-value=13 Score=37.88 Aligned_cols=35 Identities=17% Similarity=0.051 Sum_probs=24.6
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEecc
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGT 669 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTGT 669 (1159)
.+++|||||+|.+... ....+..+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 4789999999998321 33444433 44778999998
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=44.89 E-value=28 Score=38.50 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.2
Q ss_pred ccceeecCCCCchhHHHHHHHH
Q 001094 415 SGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 415 ~GGILADemGLGKTlqaIAlI~ 436 (1159)
+|-+|.=+.|.|||..+-++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5678899999999998877753
No 186
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=44.88 E-value=60 Score=29.70 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=43.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhc
Q 001094 1006 KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT 1052 (1159)
Q Consensus 1006 KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~ 1052 (1159)
-++|||.-+..|.-|-+.++..|+..+.+......+.|..-+..|..
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999987
No 187
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.00 E-value=19 Score=31.18 Aligned_cols=48 Identities=21% Similarity=0.600 Sum_probs=35.8
Q ss_pred hccccccCCCCCCccch-hcccCccchhhhHHhhhhcC-CCCCCCccccccc
Q 001094 837 ASLAICGICNDPPEDAV-VSICGHVFCNQCICERLTAD-DNQCPTRNCKIRL 886 (1159)
Q Consensus 837 ~~~~~C~iC~~~~~~~~-i~~CgH~~C~~Ci~~~l~~~-~~~Cp~~~c~~~~ 886 (1159)
.....|.||.+...... -..|+|.|=..|+..|+... ...||. |+..+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~--Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPH--CNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTT--TCSCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCC--CcCcC
Confidence 34578999998765332 23799999999999999764 378997 66543
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=42.23 E-value=86 Score=34.28 Aligned_cols=22 Identities=23% Similarity=-0.008 Sum_probs=17.3
Q ss_pred ccceeecCCCCchhHHHHHHHH
Q 001094 415 SGGILADDQGLGKTISTIALIL 436 (1159)
Q Consensus 415 ~GGILADemGLGKTlqaIAlI~ 436 (1159)
.+-+|.=+.|.|||..+-+++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4577889999999987766653
No 189
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=42.19 E-value=0.26 Score=50.93 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=65.0
Q ss_pred CCcccccccccchhhhhhhhcccccccccccCCCccccccCCCCCCCCCCCCCCeEEEeccCCC----CCCcchhhcccc
Q 001094 238 QPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQP----ARSNQSLVLGKT 313 (1159)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 313 (1159)
+.+.|....+.|.++..+|..+......++..+|||++++++|+.+...+..+++.++|+|=.. ...+...++-||
T Consensus 76 ~~~~L~~~~~~~~~kl~nf~kk~~~~~~~~~~~s~Ed~e~~~~~~e~~~~~~~e~~~VErIi~~r~~~~~~g~~~yLVKW 155 (187)
T 2b2y_A 76 TEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKW 155 (187)
T ss_dssp CHHHHHHTTCBCHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEE
T ss_pred CHHHhCccchhhHHHHHHHHHhhhccccccccCCHHHHhhhhhhhhHHhhhhhhcceeEEEEEeeeecCCCCcEEEEEEE
Confidence 3445555557888999999666666677888899999988888766555566667667776211 134457789999
Q ss_pred ccCccccccccccc
Q 001094 314 LSMNRSACSNHSVA 327 (1159)
Q Consensus 314 ~~~~~~~~~~~~~~ 327 (1159)
-+++++.|.|+...
T Consensus 156 kgl~Y~e~TWE~~~ 169 (187)
T 2b2y_A 156 QGLPYSECSWEDGA 169 (187)
T ss_dssp TTSCGGGCEEECHH
T ss_pred CCCChhhCcccchh
Confidence 99999999887554
No 190
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=40.92 E-value=61 Score=34.03 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=21.2
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEec
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSG 668 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTG 668 (1159)
..+.|+|||||.+... ....|..| ....+++..|
T Consensus 101 ~~dvV~IDEaQFf~~~---~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDE---IVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTH---HHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEechhcCCHH---HHHHHHHHHHCCCEEEEee
Confidence 3568999999998642 33333333 3455666655
No 191
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=39.99 E-value=75 Score=39.85 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=59.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHh----hCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEE
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1078 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~----~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~V 1078 (1159)
.+.+++|.+.....+..+...+. ..|+++..++|+++..+|...+..... +.+.|++.+.......+++.....|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN-GQIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS-SCCCEEEECTTHHHHCCCCSCCCEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHhhhhhccCCceE
Confidence 46789999998877666655554 458999999999999999999998887 6788888886655556666666655
Q ss_pred EE
Q 001094 1079 LL 1080 (1159)
Q Consensus 1079 I~ 1080 (1159)
|+
T Consensus 495 VI 496 (780)
T 1gm5_A 495 II 496 (780)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 192
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=37.79 E-value=30 Score=32.85 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=36.7
Q ss_pred EEEEcCcHHHH-------HHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHh
Q 001094 1007 AIVFSQWTKML-------DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFN 1051 (1159)
Q Consensus 1007 vIIFSq~t~~L-------dlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~ 1051 (1159)
|.||+...... ..+..+|...||.|..+|=++..+.|+.++++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 45666554333 5788889999999999999999999999999984
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=35.77 E-value=1.7e+02 Score=33.78 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=16.8
Q ss_pred ccceeecCCCCchhHHHHHHH
Q 001094 415 SGGILADDQGLGKTISTIALI 435 (1159)
Q Consensus 415 ~GGILADemGLGKTlqaIAlI 435 (1159)
.+-+|.=..|+|||..+-++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia 151 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIG 151 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 457888999999998776654
No 194
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=33.90 E-value=1.4e+02 Score=33.73 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhh---CCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccc---cCccccC
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLG---LNMVAAC 1076 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~---~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~G---LNL~~A~ 1076 (1159)
.+.++||.+.....+..+...++. .+++...+.|+++..+|...+..+.. +.+.|++++....-.- +++...+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-DDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH-TCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc-CCCCEEEECHHHHHHHHHHhcccccc
Confidence 567999999999998888888877 68899999999999888888888876 5578899886654221 3344555
Q ss_pred EEEE
Q 001094 1077 HVLL 1080 (1159)
Q Consensus 1077 ~VI~ 1080 (1159)
.||+
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 195
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=31.66 E-value=48 Score=29.15 Aligned_cols=27 Identities=4% Similarity=0.086 Sum_probs=15.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhhCCCcEE
Q 001094 1006 KAIVFSQWTKMLDLLEASLKDSSIQYR 1032 (1159)
Q Consensus 1006 KvIIFSq~t~~LdlLe~~L~~~gi~~~ 1032 (1159)
+++|+..-......+...|...|+.+.
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~ 29 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVI 29 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEE
Confidence 556666666666666666665555443
No 196
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=30.09 E-value=1.3e+02 Score=26.39 Aligned_cols=26 Identities=15% Similarity=0.357 Sum_probs=14.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhhCCCcE
Q 001094 1006 KAIVFSQWTKMLDLLEASLKDSSIQY 1031 (1159)
Q Consensus 1006 KvIIFSq~t~~LdlLe~~L~~~gi~~ 1031 (1159)
+++|...-......+...|...|+.+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v 28 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEI 28 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEE
Confidence 45555555555555555555555443
No 197
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=29.60 E-value=70 Score=38.78 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=28.7
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhcc-cCcEEEEeccCCCC
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGLR-AKRRWCLSGTPIQN 673 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L~-a~~RwlLTGTPiqN 673 (1159)
.|+.|+|||+|-+- ...+..+..|. ...++++.|-|-|.
T Consensus 213 ~~~~ilVDE~QD~~---~~q~~ll~~l~~~~~~l~~vGD~~Qs 252 (647)
T 3lfu_A 213 RFTNILVDEFQDTN---NIQYAWIRLLAGDTGKVMIVGDDDQS 252 (647)
T ss_dssp HCCEEEESSGGGCC---HHHHHHHHHHHTTTCEEEEEECGGGC
T ss_pred hCCEEEEECcccCC---HHHHHHHHHHhcCCCEEEEEcCchhh
Confidence 58999999999863 44555565553 45689999999773
No 198
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=29.40 E-value=1.4e+02 Score=35.52 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHhcCCCCCCCccchhhhhhhcccccccccccccccc
Q 001094 392 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 471 (1159)
Q Consensus 392 ~L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 471 (1159)
.+||||++.+.-.......+ +-.|+--.+|.|||+..+.-++..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~---~~~~~~a~TGtGKT~~~l~p~l~~--------------------------------- 46 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN---FLVALNAPTGSGKTLFSLLVSLEV--------------------------------- 46 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT---CEEEEECCTTSSHHHHHHHHHHHH---------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHcC---CcEEEECCCCccHHHHHHHHHHhC---------------------------------
Confidence 68999999776444332221 346778889999999776544320
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHhcCCCCCcEEEEEeC
Q 001094 472 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHG 539 (1159)
Q Consensus 472 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~tLIV~P~s-Ll~QW~~Ei~k~~~~~~~l~Vlvy~G 539 (1159)
..++||++|+. +..||.+|+.+... ...+++.+..|
T Consensus 47 -------------------------------~~~v~i~~pt~~l~~q~~~~~~~l~~-~~~~~~~~l~g 83 (551)
T 3crv_A 47 -------------------------------KPKVLFVVRTHNEFYPIYRDLTKIRE-KRNITFSFLVG 83 (551)
T ss_dssp -------------------------------CSEEEEEESSGGGHHHHHHHHTTCCC-SSCCCEEECCC
T ss_pred -------------------------------CCeEEEEcCCHHHHHHHHHHHHHHhh-hcCccEEEEcc
Confidence 12589999997 78999999976532 23577777766
No 199
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.54 E-value=51 Score=29.92 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=14.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHhhCCCc
Q 001094 1005 EKAIVFSQWTKMLDLLEASLKDSSIQ 1030 (1159)
Q Consensus 1005 ~KvIIFSq~t~~LdlLe~~L~~~gi~ 1030 (1159)
.++||...-......|...|...|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~ 29 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQ 29 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 35555555555555555555555543
No 200
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=26.30 E-value=1.7e+02 Score=26.25 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=16.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHhhCCC
Q 001094 1005 EKAIVFSQWTKMLDLLEASLKDSSI 1029 (1159)
Q Consensus 1005 ~KvIIFSq~t~~LdlLe~~L~~~gi 1029 (1159)
.+++|...-....+.+...|...+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~ 28 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFG 28 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcc
Confidence 4667777777777777777765543
No 201
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.13 E-value=54 Score=36.40 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCccceeecCCCCchhHHHHHHHHh
Q 001094 393 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 437 (1159)
Q Consensus 393 L~phQ~~gv~wMl~~e~~~~~~~GGILADemGLGKTlqaIAlI~~ 437 (1159)
++|+|...+.-+...-.......+-+|.-+.|.|||..+.+++..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 689999988877665444333345678889999999999888754
No 202
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.86 E-value=1.6e+02 Score=27.03 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccc--cccccCccc------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA--ASLGLNMVA------ 1074 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStka--gg~GLNL~~------ 1074 (1159)
.+.+|+|...-......|...|...|+.+...... .+++..+.....+.++|+.... +..|+.+..
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTG------EAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQIS 77 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSH------HHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecCh------HHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999999988876543322 3445555443456788888765 356766531
Q ss_pred cCEEEEecCCCCcCh
Q 001094 1075 ACHVLLLDLWWNPTT 1089 (1159)
Q Consensus 1075 A~~VI~lD~~WNP~~ 1089 (1159)
.-.||++....++..
T Consensus 78 ~~~ii~ls~~~~~~~ 92 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAV 92 (140)
T ss_dssp CCCEEEEESSSSCCC
T ss_pred CCCEEEEECCCCHHH
Confidence 234666665555544
No 203
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=25.62 E-value=1e+02 Score=28.11 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=40.3
Q ss_pred CCceEEEEcC------cHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee
Q 001094 1003 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062 (1159)
Q Consensus 1003 ~~~KvIIFSq------~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS 1062 (1159)
...+|+||+. +=..-......|...|++|..++=......++.+.+... ...+.++.+.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g-~~tvP~ifi~ 80 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN-WPTFPQLYIG 80 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CSSSCEEEET
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC-CCCCCeEEEC
Confidence 5789999998 556778888889999999887765555555555544333 3444444444
No 204
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=25.40 E-value=29 Score=35.76 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=23.2
Q ss_pred eEEEEccCcccCC---chhHHHHHHHhccc----CcEEEEeccCC
Q 001094 634 FRVVLDEAQSIKN---HRTQVARACWGLRA----KRRWCLSGTPI 671 (1159)
Q Consensus 634 ~rVIlDEAH~IKN---~~S~~~ral~~L~a----~~RwlLTGTPi 671 (1159)
.+|||||||.+-+ ......+.+..+.. ..-++|.|.|.
T Consensus 89 ~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 89 SIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp CEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred eEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 4799999999832 22222244444532 23688888883
No 205
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.07 E-value=2.2e+02 Score=25.94 Aligned_cols=80 Identities=9% Similarity=0.152 Sum_probs=50.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccc-cccCcc--------
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS-LGLNMV-------- 1073 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg-~GLNL~-------- 1073 (1159)
...++||...-......|...|...|+.+..... -.++++.... ..+.++|+.....+ .|+.+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADS------GGQCIDLLKK-GFSGVVLLDIMMPGMDGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS------HHHHHHHHHT-CCCEEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCC------HHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 5678999999999999999999988886544332 1344444444 34678887766533 454431
Q ss_pred -ccCEEEEecCCCCcCh
Q 001094 1074 -AACHVLLLDLWWNPTT 1089 (1159)
Q Consensus 1074 -~A~~VI~lD~~WNP~~ 1089 (1159)
....||++....++..
T Consensus 79 ~~~~pii~~s~~~~~~~ 95 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDA 95 (142)
T ss_dssp CTTEEEEEEECTTCCCC
T ss_pred cCCCCEEEEECCCCHHH
Confidence 1234666655544433
No 206
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=22.76 E-value=1.2e+02 Score=27.75 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCceEEEEcC------cHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEee
Q 001094 1003 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1062 (1159)
Q Consensus 1003 ~~~KvIIFSq------~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlS 1062 (1159)
...+|+||+. +=..-......|...|++|..++=....+.|+.+.+ +.....+.++.+.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~-~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA-YSSWPTYPQLYVS 78 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH-HHTCCSSCEEEET
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH-HHCCCCCCEEEEC
Confidence 5789999995 445667788888999999988776666666655544 4333445444444
No 207
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=21.90 E-value=61 Score=34.35 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=23.9
Q ss_pred ceeEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEecc
Q 001094 632 GWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGT 669 (1159)
Q Consensus 632 ~w~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTGT 669 (1159)
.++.|+|||||.+.. ....+..+ .....+++||=
T Consensus 90 ~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEECC
T ss_pred cCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEec
Confidence 478999999999963 44444444 35567888874
No 208
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.86 E-value=47 Score=34.91 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=25.6
Q ss_pred ccceeEEEEccCcccCCchhHHHHHHHhc-ccCcEEEEecc
Q 001094 630 KVGWFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGT 669 (1159)
Q Consensus 630 ~i~w~rVIlDEAH~IKN~~S~~~ral~~L-~a~~RwlLTGT 669 (1159)
.-.+++|||||+|.+... ....+..| .....++|+|-
T Consensus 87 ~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp CTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 345899999999987542 33344443 34678999996
No 209
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.04 E-value=1.8e+02 Score=26.59 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=40.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecccc-ccccCc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAA-SLGLNM 1072 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkag-g~GLNL 1072 (1159)
...++||...-......|...|...|+.+...... .++++.+.. ..+.++|+..... ..|+.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~------~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~ 68 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSA------AQALEQVAR-RPYAAMTVDLNLPDQDGVSL 68 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSH------HHHHHHHHH-SCCSEEEECSCCSSSCHHHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCH------HHHHHHHHh-CCCCEEEEeCCCCCCCHHHH
Confidence 45689999999999999999998888875443321 334444444 3456777765543 335543
No 210
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.67 E-value=2.8e+02 Score=24.94 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1065 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStka 1065 (1159)
...++||...-......|...|...|+.+...... ..++..+.....+.++|+....
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~~~~~~~~dlvi~D~~l 62 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGA------EEARLYLHYQKRIGLMITDLRM 62 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSH------HHHHHHHHHCTTEEEEEECSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCH------HHHHHHHHhCCCCcEEEEeccC
Confidence 46789999999999999999999988876654322 2333344443447777777553
No 211
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.50 E-value=1.2e+02 Score=27.44 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=41.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeecccc-ccccCc
Q 001094 1003 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAA-SLGLNM 1072 (1159)
Q Consensus 1003 ~~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkag-g~GLNL 1072 (1159)
.+.+|+|...-......|...|...|+.+...... .+++..+.. ..+.++|+..... ..|+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~~-~~~dlii~d~~l~~~~g~~~ 68 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNG------FDAGIKLST-FEPAIMTLDLSMPKLDGLDV 68 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSH------HHHHHHHHH-TCCSEEEEESCBTTBCHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCH------HHHHHHHHh-cCCCEEEEecCCCCCCHHHH
Confidence 46789999999999999999999988876544322 233333433 3456777776653 346554
No 212
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=20.33 E-value=83 Score=27.40 Aligned_cols=40 Identities=35% Similarity=0.796 Sum_probs=30.4
Q ss_pred ccccCCCCCCccchhccc----CccchhhhHHhhhhc----CCCCCCC
Q 001094 840 AICGICNDPPEDAVVSIC----GHVFCNQCICERLTA----DDNQCPT 879 (1159)
Q Consensus 840 ~~C~iC~~~~~~~~i~~C----gH~~C~~Ci~~~l~~----~~~~Cp~ 879 (1159)
-.|-+|.+..|+.-.-.| .|.||..|-.+.+.. .+-.||+
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 469999999998755445 699999999888764 3445665
No 213
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.20 E-value=2.1e+02 Score=29.18 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=66.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHhhCCCcEEecCCCCCHHHHHHHHHHHhcCCCceEEEeeccccccccCccccCEEEEecC
Q 001094 1004 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1083 (1159)
Q Consensus 1004 ~~KvIIFSq~t~~LdlLe~~L~~~gi~~~rldGs~s~~~R~~~v~~F~~d~~~~VLLlStkagg~GLNL~~A~~VI~lD~ 1083 (1159)
..|+++++.+..+.++++..+.+.+..+..+.|.+ ++-....+.. + .++.|+| | .||.+-=|...-.+=.++.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l--~~~v~~a~~~-~-~~~dVII-S--RGgta~~lr~~~~iPVV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASL--TRASKIAFGL-Q-DEVDAII-S--RGATSDYIKKSVSIPSISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCH--HHHHHHHHHH-T-TTCSEEE-E--EHHHHHHHHTTCSSCEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCH--HHHHHHHHHh-c-CCCeEEE-E--CChHHHHHHHhCCCCEEEE
Confidence 56999999999999999998888777777777875 3334444555 3 5677777 3 4555554554434555666
Q ss_pred CCCcChhhHHhhhhcccCC
Q 001094 1084 WWNPTTEDQAIDRAHRIGQ 1102 (1159)
Q Consensus 1084 ~WNP~~e~QAigR~hRiGQ 1102 (1159)
..+.....|++-++-+.+.
T Consensus 77 ~~s~~Dil~al~~a~~~~~ 95 (196)
T 2q5c_A 77 KVTRFDTMRAVYNAKRFGN 95 (196)
T ss_dssp CCCHHHHHHHHHHHGGGCS
T ss_pred cCCHhHHHHHHHHHHhhCC
Confidence 7788888899999988875
Done!