Your job contains 1 sequence.
>001095
MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIA
GSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKPDSSRVKPEDNSCST
GISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLH
REWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTIT
ALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARR
RQLSVGKFTPMDDLKCPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCT
RNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCER
PEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWD
NCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDELSEM
ETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLA
LCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD
YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR
WLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL
LHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVES
LLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKY
NLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIE
LQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAG
MYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVI
SRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLH
DFAESNYLSHLSFVRTNS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001095
(1158 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504955712 - symbol:AT3G54460 species:3702 "Ara... 1912 0. 4
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 364 1.8e-36 2
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 232 3.6e-36 3
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 357 3.2e-35 3
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 354 5.9e-35 2
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 357 1.8e-34 3
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 212 5.2e-33 3
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 341 1.0e-32 3
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 330 6.0e-30 2
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 197 1.6e-29 3
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 215 2.4e-29 4
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 317 1.4e-28 2
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 303 2.9e-28 2
ASPGD|ASPL0000091433 - symbol:AN11803 species:162425 "Eme... 197 4.9e-28 3
ASPGD|ASPL0000095127 - symbol:AN11804 species:162425 "Eme... 197 4.9e-28 3
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 173 5.7e-25 4
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 194 2.1e-23 3
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 156 2.0e-22 4
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 170 3.9e-22 3
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 203 9.6e-22 4
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 137 1.3e-21 5
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 137 1.3e-21 5
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 135 2.1e-21 4
UNIPROTKB|G4NCX0 - symbol:MGG_00338 "Uncharacterized prot... 172 2.4e-21 3
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 148 2.9e-21 5
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 148 2.9e-21 5
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 181 3.5e-21 5
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 153 8.7e-21 5
POMBASE|SPAC144.05 - symbol:SPAC144.05 "ATP-dependent DNA... 174 9.1e-21 3
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 150 9.1e-21 5
DICTYBASE|DDB_G0274075 - symbol:DDB_G0274075 "putative DE... 155 2.1e-20 4
DICTYBASE|DDB_G0273053 - symbol:DDB_G0273053 "putative DE... 155 2.1e-20 4
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 181 2.3e-20 3
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 164 2.9e-20 4
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 145 3.7e-20 5
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 143 6.5e-20 5
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 158 2.7e-19 8
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 173 4.5e-19 3
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 183 5.2e-19 6
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 175 1.0e-18 4
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 175 1.0e-18 4
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 155 1.1e-18 4
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 138 1.8e-18 6
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 172 2.0e-18 4
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 154 2.5e-18 4
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 184 2.5e-18 5
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 174 8.0e-18 4
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 132 1.2e-17 5
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 179 1.6e-17 3
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 172 4.3e-17 6
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 162 4.8e-17 4
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 162 5.3e-17 4
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 164 1.0e-16 5
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 164 1.0e-16 5
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 174 1.2e-16 6
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 139 2.1e-16 3
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 124 2.9e-16 5
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 195 3.6e-16 3
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 230 8.6e-16 1
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 138 1.0e-15 4
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 113 1.4e-15 5
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 208 3.1e-15 3
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 208 3.3e-15 3
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 136 4.3e-15 5
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 138 1.0e-14 4
FB|FBgn0035689 - symbol:CG7376 species:7227 "Drosophila m... 162 1.1e-14 4
ASPGD|ASPL0000031617 - symbol:AN10707 species:162425 "Eme... 128 1.2e-14 6
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 171 8.4e-14 4
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 157 1.7e-13 3
CGD|CAL0000073 - symbol:orf19.1667 species:5476 "Candida ... 130 1.9e-13 5
UNIPROTKB|Q5AJC4 - symbol:CaO19.1667 "Putative uncharacte... 130 1.9e-13 5
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 171 2.5e-13 3
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 149 4.0e-13 4
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 133 7.5e-13 5
TAIR|locus:2064786 - symbol:AT2G40770 species:3702 "Arabi... 104 1.5e-12 5
POMBASE|SPAC20G8.08c - symbol:fft1 "fun thirty related pr... 138 1.6e-12 3
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 139 1.8e-12 3
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 146 3.8e-12 3
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 150 4.6e-12 3
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 152 8.9e-12 3
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 164 1.0e-11 3
ASPGD|ASPL0000056677 - symbol:AN1024 species:162425 "Emer... 145 1.8e-11 3
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 145 3.1e-11 3
ASPGD|ASPL0000061821 - symbol:AN10043 species:162425 "Eme... 136 3.3e-11 3
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 152 4.5e-11 3
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 149 9.6e-11 3
UNIPROTKB|Q5FWR0 - symbol:smarcad1 "SWI/SNF-related matri... 136 1.0e-10 3
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 147 1.2e-10 3
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 126 1.4e-10 3
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 153 1.9e-10 3
UNIPROTKB|D4A1K7 - symbol:Ttf2 "Protein Ttf2" species:101... 155 2.3e-10 3
UNIPROTKB|Q9H4L7 - symbol:SMARCAD1 "SWI/SNF-related matri... 133 2.5e-10 4
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 145 2.5e-10 3
RGD|1309640 - symbol:Smarcad1 "SWI/SNF-related, matrix-as... 133 3.1e-10 4
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 147 3.1e-10 3
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 121 3.5e-10 3
TAIR|locus:2051678 - symbol:ETL1 species:3702 "Arabidopsi... 145 4.6e-10 3
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 116 4.6e-10 3
UNIPROTKB|F1RWW3 - symbol:SMARCAD1 "Uncharacterized prote... 133 6.2e-10 4
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 134 6.4e-10 3
WARNING: Descriptions of 278 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:504955712 [details] [associations]
symbol:AT3G54460 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001810 InterPro:IPR011124 Pfam:PF00176 Pfam:PF00271
Pfam:PF00646 Pfam:PF07496 PROSITE:PS50181 SMART:SM00184
SMART:SM00256 SMART:SM00490 GO:GO:0009506 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270
EMBL:AL138656 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 EMBL:AY091046 EMBL:BT004336
EMBL:AK221681 EMBL:AK227150 IPI:IPI00540934 PIR:T47605
RefSeq:NP_680129.1 UniGene:At.44814 ProteinModelPortal:Q9M1I1
SMR:Q9M1I1 PaxDb:Q9M1I1 PRIDE:Q9M1I1 EnsemblPlants:AT3G54460.1
GeneID:824611 KEGG:ath:AT3G54460 TAIR:At3g54460
HOGENOM:HOG000029561 InParanoid:Q9M1I1 OMA:NDPSHVE PhylomeDB:Q9M1I1
ProtClustDB:CLSN2690606 Genevestigator:Q9M1I1 Uniprot:Q9M1I1
Length = 1378
Score = 1912 (678.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 360/568 (63%), Positives = 431/568 (75%)
Query: 418 CERPEKVSTDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEE 477
C+R K TD ++ W+QCD+C KWR+++D V+ +AWFCS N+DP +QSC DPEE
Sbjct: 562 CKR--KGLTDSDVESDIWMQCDSCSKWRRIIDEGVSVTGSAWFCSNNNDPAYQSCNDPEE 619
Query: 478 AWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLSPDEL 537
WD Q I YL GF+ KG S + N+SFF SVL+EH ++S KKAL WLAKL ++L
Sbjct: 620 LWDKSQPIKYLQGFYTKGASGEESDNISFFTSVLREHKSSVSSTVKKALIWLAKLPLEKL 679
Query: 538 SEMETTGLASPILGSYAAGETQGFHKIFQAFGLIRRVEKGITRWYYPKTXXXXXXXXXXX 597
S+MET GL P+LG + GF +IF+AFGL RVEKG+T+W+YPK
Sbjct: 680 SQMETVGLPGPVLGLKL--DALGFQRIFRAFGLKSRVEKGVTKWFYPKFLENLVFDVPAL 737
Query: 598 XXXXCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSL 657
C+PLD+ RLYLS+ATLIVVP+ LV+HW TQIQ+HV QL + VW DH + S HSL
Sbjct: 738 KVALCQPLDTFRLYLSKATLIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIELSPHSL 797
Query: 658 AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTA 717
AWDYDVVITTF+RLSAEW RKKSP++QVHWLRVMLDEGHTLGSS++LTNK QMA+SLTA
Sbjct: 798 AWDYDVVITTFSRLSAEWNPRKKSPLIQVHWLRVMLDEGHTLGSSVSLTNKFQMAVSLTA 857
Query: 718 SNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRL 777
NRWLLTG SQLSH+QP+LKFLHEE YG+N K W+ GILRPFEAEMEEGR RL
Sbjct: 858 CNRWLLTGTPTPNTPNSQLSHIQPLLKFLHEEVYGENPKFWEAGILRPFEAEMEEGRLRL 917
Query: 778 LQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSH 837
LQLL RCMIS+RK DLQ IP CIK+VT+LNF HA +YNELV TVRRNIL+ADWNDPSH
Sbjct: 918 LQLLQRCMISSRKKDLQMIPPCIKKVTYLNFLPGHARSYNELVETVRRNILLADWNDPSH 977
Query: 838 VESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAF 897
VESLLN KQWKFRS TI N+RLSCCVAGHIK+TDAG DI+ETMD L+EN LD ++EY+F
Sbjct: 978 VESLLNSKQWKFRSITISNVRLSCCVAGHIKMTDAGHDIKETMDALLENDLDLWTEEYSF 1037
Query: 898 IKYNLLNGGNC--------------LRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILT 943
I+ +L+ G NC RH+LCLDCVA+DSE+C++ GCG+LYEMQ+PE L
Sbjct: 1038 IQDSLIGGCNCKRCGEWCRLPVITPCRHLLCLDCVALDSERCTISGCGYLYEMQTPETLA 1097
Query: 944 RPENPNPKWPVPQDLIELQPSYRQ--WS 969
RPENPNPKWPVP+DLIELQPSY+Q W+
Sbjct: 1098 RPENPNPKWPVPKDLIELQPSYKQDDWN 1125
Score = 681 (244.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 142/288 (49%), Positives = 181/288 (62%)
Query: 108 SSRVKPEDNSCSTGXXXXXXXXXXXXLTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKL 167
SSRV P +SC +G L +L DL IAA CR R L + I+PCM LKL
Sbjct: 271 SSRVLPSTDSCVSGVWDLSDDVLISILMKLDTKDLFSIAAVCRLFRSLTSLIVPCMNLKL 330
Query: 168 FPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGG 227
FPHQQAAV WML RE AEV HPLY+ TEDGF FYVN V+GDI T AP ++DF GG
Sbjct: 331 FPHQQAAVGWMLERERKAEVSSHPLYLSFDTEDGFSFYVNAVTGDIITEAAPMVKDFRGG 390
Query: 228 MFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNM 287
MFCDEPGLGKTITALSLILKTQGT+ADPP+G+ I+WCTH D +C YY+ + D+ T N+M
Sbjct: 391 MFCDEPGLGKTITALSLILKTQGTMADPPEGLPIVWCTHKSDKKCAYYEYTSDQFTSNSM 450
Query: 288 CLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRARLVDPGDE-IEGFSSFSDVDMISPL 346
KR S ++ R Q+S F P+ + K K+ARL+DP D+ +E +S + + + +
Sbjct: 451 SAVKRFQSPSSCRNQVSFEAFRPLLESKSLPFKQARLMDPDDQTLESKNSNFENEFETHI 510
Query: 347 VASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKK 394
AS + +C ++LG V+KNL Y+ S + AK S KK
Sbjct: 511 PASLDLKA---QCRKSLGNVRKNLLPAYNGASELSEVMEAKRISNWKK 555
Score = 642 (231.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 124/187 (66%), Positives = 150/187 (80%)
Query: 971 TNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNK 1030
+ FL ++L+ + S DKV+IFSQFLEHIHVIEQQLT AGIKF MYSPM S NK
Sbjct: 1173 SEAFLGKELHGQDCGSQMVFVDKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNK 1232
Query: 1031 IKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATR 1090
+K+L MF++DA C+ALLMDGS +LGLDLSFVT VFLMEPIWD+S+EEQVISRAHRMGA R
Sbjct: 1233 MKALAMFQNDADCMALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKR 1292
Query: 1091 PIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSH 1150
PI VETL MRGT+EEQM+ FL+D ++ RLL + ++ ++E RS RTLHD ESNYLSH
Sbjct: 1293 PIFVETLTMRGTIEEQMMRFLEDAEKSDRLLSGDYIEAKQETTRSRRTLHDLVESNYLSH 1352
Query: 1151 LSFVRTN 1157
LSFVR++
Sbjct: 1353 LSFVRSD 1359
Score = 317 (116.6 bits), Expect = 0., Sum P(4) = 0.
Identities = 62/107 (57%), Positives = 78/107 (72%)
Query: 1 MSVVHQLQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIYLPIAAWSGWQFPKSGAIA 60
+SVV QL +LV KCLKI RV++V+ GENG RA VLVD+YLPI WSGWQFPKS A A
Sbjct: 132 ISVVQQLHALVANKCLKIICRVVKVDKGENGEERAVVLVDVYLPIELWSGWQFPKSQATA 191
Query: 61 GSLFRHVSCDWEKRKSVLLDGGECFKD--GCDSSIWNISDCHVLDWK 105
+LF+H+SCDW R S+L DG +++ G +IW++SDCHV D K
Sbjct: 192 AALFKHLSCDWGLRVSIL-DGKSIWEEANGRIKAIWDLSDCHVFDCK 237
Score = 43 (20.2 bits), Expect = 0., Sum P(4) = 0.
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 87 DGCDSSIWNISD 98
D C S +W++SD
Sbjct: 279 DSCVSGVWDLSD 290
Score = 38 (18.4 bits), Expect = 2.5e-86, Sum P(3) = 2.5e-86
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 145 IAATCRHLRCL 155
+ CRHL CL
Sbjct: 1059 VITPCRHLLCL 1069
Score = 37 (18.1 bits), Expect = 9.1e-91, Sum P(3) = 9.1e-91
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 497 SDGKKQNVSFFISVLKEHYL 516
SDGK + + ++ LK+H L
Sbjct: 1358 SDGKMEFAASQLAGLKDHQL 1377
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 364 (133.2 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 130/530 (24%), Positives = 248/530 (46%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
R TLI+ P ++ +W Q QH++ L+ +V+ + +L D+V+TT+N L+
Sbjct: 476 RTTLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGPDRVRDPTLLSKQDIVLTTYNILT 535
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
++G + SP+ + WLRV+LDEGH + + N + + + L A RW+LTG
Sbjct: 536 HDYGTKGDSPLHSIRWLRVILDEGHAIRNP-N-AQQTKAVLDLEAERRWVLTGTPIQ--- 590
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD 792
+ L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 591 -NSLKDLWSLLSFLKLKPF-VDREWWHRTIQRPVTMGDEAGLRRLQSLIKNITLRRTKTS 648
Query: 793 -LQTIPLC-IKE----VTFLNFTEEHAGTY----NELVVTVRR----NILMADWNDPSHV 838
++ P+ + E + + ++E Y NE T+ R ++A + D +
Sbjct: 649 KIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGKATIGRYFNEGTVLAHYADVLGL 708
Query: 839 ESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFI 898
LL +Q + + N S +G+ + + + + M +++ +G D +E A
Sbjct: 709 --LLRLRQICCHTHLLANAVSSSGPSGNDTPEELRKKLIKKMKLILSSGSD---EECAIC 763
Query: 899 KYNLLNG--GNCLRHILCLDCVA--MDSEK--CSLPGCGFLYEMQSPEILTRPENPNPKW 952
+L+ +C H+ C C+ + +E+ P C ++ ++ P
Sbjct: 764 LDSLMAPVITHCA-HVFCKPCICQVIQNEQPHAKCPLCR--NDIHGDSLIECP------- 813
Query: 953 PVPQDLI--ELQPSYRQWSNTNTFLKQDLYRPNLESNKALPD-KVIIFSQFLEHIHVIEQ 1009
P++L + S +W++++ L ++ K P+ K ++ SQF + +IE
Sbjct: 814 --PEELACNTEKKSNMEWTSSSKI--NALMHALIDLRKKNPNIKSLVVSQFTTFLSLIET 869
Query: 1010 QLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMDGSASLGLDLSFVTRVFL 1066
L +G F + M +++S+ F++ + + LL + +GL+LS +RVFL
Sbjct: 870 PLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFL 929
Query: 1067 MEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116
M+P W+ + E+Q R HR+G + + + ++ +VEE ML+ +Q+T R
Sbjct: 930 MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK-IQNTKR 978
Score = 120 (47.3 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE N+E L P + + ++ Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMVSRE-NSEEL--PPFWEQRSD----LYYNTIT-NFSEKDRP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 232 (86.7 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 60/189 (31%), Positives = 94/189 (49%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWG 676
LIV P L+ WKT+I+ H +PG L ++V +P L DVVITT+ L++E+
Sbjct: 493 LIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFS 552
Query: 677 RRKKSP---MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ + + V W R++LDE HT+ +S + + A +L A RW LTG
Sbjct: 553 QENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLA--AAALVADRRWCLTGTPIQ---- 606
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARK--T 791
+ L L +L+FL E +G W+ + +PFE E G + +L M+ K T
Sbjct: 607 NNLEDLYSLLRFLRIEPWG-TWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSST 665
Query: 792 DLQTIPLCI 800
D + P+ +
Sbjct: 666 DREGRPILV 674
Score = 197 (74.4 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 64/227 (28%), Positives = 111/227 (48%)
Query: 911 HILCLDCVAMDSEKCSLPG-CGFLYEMQSP-EILTRPENPNPKWPVPQDLIELQPSYRQW 968
H LC +C+ + S + S G C S E++T P + V ++ +E
Sbjct: 811 HRLCRECL-LASWRNSTSGLCPVCRNTVSKQELITAPTESRFQVDVEKNWVE-------- 861
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
S+ T L ++L E ++ K I+FSQ+ + +++ L+ F + +
Sbjct: 862 SSKITALLEEL-----EGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQ 916
Query: 1029 NKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ K L F D S L LLM A +G++L+ + F+M+P W+ ++EEQ + R HR+G
Sbjct: 917 QREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIG 976
Query: 1088 ATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGAR 1134
T+ + + ++GTVEE+M E +Q R +R++ L E AR
Sbjct: 977 QTKEVKIRRFIVKGTVEERM-EAVQA--RKQRMISGALTDQEVRSAR 1020
Score = 107 (42.7 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 166 KLFPHQQAAVEWMLHREWN-----AEVLRHPLY--IDLATEDGFYFYVNTVSGDIATGTA 218
+L P+Q+ A+ WM E A + HP + LA + Y+N+ +GD
Sbjct: 347 ELRPYQKQALHWMTQLEKGNCTDEAATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFP 406
Query: 219 PTMRDFHGGMFCDEPGLGKTITALSLIL 246
T++ GG+ D GLGKT+ +SL+L
Sbjct: 407 STLQMARGGILADAMGLGKTVMTISLLL 434
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 357 (130.7 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 137/534 (25%), Positives = 247/534 (46%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW--DYDVVITTFNR 670
+RATLI+ P ++ +W Q QHV+ ++HL + + AW D+++TT+N
Sbjct: 469 TRATLIICPLSVLSNWIDQFGQHVK-SEVHLNFYVYYGPDRIRDSAWLSKQDIILTTYNI 527
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXX 730
L+ ++G + SP+ + WLRV+LDEGH + + N + + + L A RW+LTG
Sbjct: 528 LTHDYGTKDDSPLHSIKWLRVILDEGHAIRNP-N-AQQTKAVLELEAERRWVLTGTPIQ- 584
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARK 790
+ L L +L FL + + +++ W I RP E G RL L+ + K
Sbjct: 585 ---NSLKDLWSLLSFLKLKPF-IDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTK 640
Query: 791 TD-LQTIPLC-IKE----VTFLNFTEEHAGTY----NELVVTVRR----NILMADWNDPS 836
T ++ P+ + E + + +EE Y NE + R ++A + D
Sbjct: 641 TSKIKGKPVLELPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVL 700
Query: 837 HVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQ----ETMDVLVENGLDPLS 892
+ LL +Q + + N S +G + +D E+++ E M +++ +G D
Sbjct: 701 GL--LLRLRQICCHTHLLTNGMSS---SGPSR-SDTPEELRKMLIEKMKIILSSGSD--- 751
Query: 893 QEYAFIKYNLLNG--GNCLRHILCLDCVA--MDSEK--CSLPGCGFLYEMQSPEILTRPE 946
+E A +L +C H+ C C+ + SE+ P C E+ +L E
Sbjct: 752 EECAICLDSLTFPVITHCA-HVFCKPCICQVIHSEQPHAKCPLCR--NEIHGDNLL---E 805
Query: 947 NPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPD-KVIIFSQFLEHIH 1005
P + D + S +W +++ L +E P+ K ++ SQF +
Sbjct: 806 CPPEELACDSD----KESSMEWKSSSKI--NALMHALIELRTKDPNIKSLVVSQFTTFLS 859
Query: 1006 VIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMDGSASLGLDLSFVT 1062
+IE L +G F + M +++S+ F++ + + LL + +GL+L +
Sbjct: 860 LIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAAS 919
Query: 1063 RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116
RVFLM+P W+ + E+Q R HR+G + + + ++ +VEE ML+ +Q+T R
Sbjct: 920 RVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK-IQNTKR 972
Score = 116 (45.9 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE N++ L P + + + Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMIARE-NSKEL--PPFWEQRND----LYYNTIT-NFSVKERP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
Score = 47 (21.6 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 377 ESNICNDRNAKGNSTAKKRANSSRQ---VPKRNQVGLSYVVSNSCERPE 422
ES+ C + + + K S+ PKR ++ + Y+ S+ E E
Sbjct: 353 ESSTCGEEPSISGTPEKSSCTLSQLSSVCPKRRKISVQYIESSDSEEIE 401
Score = 43 (20.2 bits), Expect = 8.5e-35, Sum P(3) = 8.5e-35
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 384 RNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHK 443
+N + N+ K R S +V + ++ L++ S + + K C+E CD +
Sbjct: 414 KNVQLNT--KSRVKGSSKVKEDSKFALTFFASATQRKMLKKGMSMMECSEA---CDTGER 468
Query: 444 WRKLLDASVADATAAW 459
R L + W
Sbjct: 469 TRATLIICPLSVLSNW 484
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 354 (129.7 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 130/530 (24%), Positives = 247/530 (46%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
R TLI+ P ++ +W Q QH++ L+ +V+ + +L D+V+TT+N L+
Sbjct: 478 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRVRDPALLSKQDIVLTTYNILT 537
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
++G + SP+ + WLRV+LDEGH + + N + + + L A RW+LTG
Sbjct: 538 HDYGTKGDSPLHSIRWLRVILDEGHAIRNP-N-AQQTKAVLDLEAERRWVLTGTPIQ--- 592
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD 792
+ L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 593 -NSLKDLWSLLSFLKLKPF-IDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS 650
Query: 793 -LQTIPLC-IKE----VTFLNFTEEHAGTY----NELVVTVRR----NILMADWNDPSHV 838
++ P+ + E + + ++E Y N+ T+ R ++A + D +
Sbjct: 651 KIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNDGRATIGRYFNEGTVLAHYADVLGL 710
Query: 839 ESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFI 898
LL +Q + + N S +G+ + + + + M +++ +G D +E A
Sbjct: 711 --LLRLRQICCHTHLLTNAVSSSGPSGNDTPEELRKKLIKKMKLILSSGSD---EECAIC 765
Query: 899 KYNLLNG--GNCLRHILCLDCVA--MDSEK--CSLPGCGFLYEMQSPEILTRPENPNPKW 952
+L +C H+ C C+ + +E+ P C ++ +L P
Sbjct: 766 LDSLTVPVITHCA-HVFCKPCICQVIQNEQPHAKCPLCR--NDIHGDNLLECP------- 815
Query: 953 PVPQDLI--ELQPSYRQWSNTNTFLKQDLYRPNLESNKALPD-KVIIFSQFLEHIHVIEQ 1009
P++L + S +W++++ L ++ K P+ K ++ SQF + +IE
Sbjct: 816 --PEELACDTEKKSNMEWTSSSKI--NALMHALIDLRKKNPNIKSLVVSQFTTFLSLIET 871
Query: 1010 QLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMDGSASLGLDLSFVTRVFL 1066
L +G F + M +++S+ F++ + + LL + +GL+LS +RVFL
Sbjct: 872 PLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFL 931
Query: 1067 MEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116
M+P W+ + E+Q R HR+G + + + ++ +VEE ML+ +Q+T R
Sbjct: 932 MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK-IQNTKR 980
Score = 116 (45.9 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE N++ L P + + ++ Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMVSRE-NSKEL--PPFWEQRSD----LYYNTIT-NFSEKDRP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
Score = 38 (18.4 bits), Expect = 8.7e-27, Sum P(2) = 8.7e-27
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 154 CLAASIMPCMKLKLFPHQQAAVE 176
C S P MK K+ +AVE
Sbjct: 444 CALTSSTPTMKKKMLKKGASAVE 466
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 357 (130.7 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 131/530 (24%), Positives = 246/530 (46%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
R TLI+ P ++ +W Q QH++ L+ +V+ + +L D+V+TT+N L+
Sbjct: 474 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILT 533
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
++G + SP+ + WLRV+LDEGH + + N + + + L A RW+LTG
Sbjct: 534 HDYGTKGDSPLHSIRWLRVILDEGHAIRNP-N-AQQTKAVLDLEAERRWVLTGTPIQ--- 588
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD 792
+ L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 589 -NSLKDLWSLLSFLKLKPF-LDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS 646
Query: 793 -LQTIPLC-IKE----VTFLNFTEEHAGTY----NELVVTVRR----NILMADWNDPSHV 838
++ P+ + E + + ++E Y NE T+ R ++A + D +
Sbjct: 647 KIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGL 706
Query: 839 ESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFI 898
LL +Q + + N S +G+ + + + M +++ +G D +E A
Sbjct: 707 --LLRLRQICCHTHLLTNAGSSSGPSGNDTPEELRKKLIRKMKLILSSGSD---EECAIC 761
Query: 899 KYNLLNG--GNCLRHILCLDCVA--MDSEK--CSLPGCGFLYEMQSPEILTRPENPNPKW 952
+L +C H+ C C+ + +E+ P C ++ +L P
Sbjct: 762 LDSLTVPVITHCA-HVFCKPCICQVIQNEQPHAKCPLCR--NDIHGDNLLECP------- 811
Query: 953 PVPQDLI--ELQPSYRQWSNTNTFLKQDLYRPNLESNKALPD-KVIIFSQFLEHIHVIEQ 1009
P++L + S +W++++ L ++ K P+ K ++ SQF + +IE
Sbjct: 812 --PEELACDTEKKSNTEWTSSSKI--NALMHALIDLRKKNPNIKSLVVSQFTTFLSLIET 867
Query: 1010 QLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMDGSASLGLDLSFVTRVFL 1066
L +G F + M +++S+ F++ + + LL + +GL+LS +RVFL
Sbjct: 868 PLRASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFL 927
Query: 1067 MEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116
M+P W+ + E+Q R HR+G + + + ++ +VEE ML+ +Q+T R
Sbjct: 928 MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK-IQNTKR 976
Score = 114 (45.2 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE N++ L P + + + Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMVSRE-NSKDL--PPFWEQRND----LYYNTIT-NFSEKDRP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
Score = 42 (19.8 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 385 NAKGNST-AKKRANSSRQVPKRNQVGLSYVVSNSCERPE 422
+ KG K +SSR PKR + + Y S+ E E
Sbjct: 367 DVKGKKKYTKSELSSSR--PKRRKTAVQYNESSDSEENE 403
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 212 (79.7 bits), Expect = 5.2e-33, Sum P(3) = 5.2e-33
Identities = 54/180 (30%), Positives = 92/180 (51%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRL 671
+R TLI+ P ++ +W QI QH++ L+L+V+ + + D+++TT+N L
Sbjct: 470 TRTTLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRIRDSTWLSKQDIILTTYNIL 529
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
+ ++G + SP+ + WLRV+LDEGH + + N + + + L A RW+LTG
Sbjct: 530 THDYGTKDNSPLHSIKWLRVILDEGHAIRNP-N-AQQTKAVLELEAERRWVLTGTPIQ-- 585
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT 791
+ L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 586 --NSLKDLWSLLSFLKLKPF-TDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRRTKT 642
Score = 172 (65.6 bits), Expect = 5.2e-33, Sum P(3) = 5.2e-33
Identities = 39/127 (30%), Positives = 70/127 (55%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASC--LALLMD 1049
K ++ SQF + +IE L +G F + M +++S+ F++ DA + LL
Sbjct: 848 KSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTDAGSPTIMLLSL 907
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+L +RVFLM+P W+ + E+Q R HR+G + + + ++ +VEE ML+
Sbjct: 908 KAGGVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 967
Query: 1110 FLQDTDR 1116
+Q+ R
Sbjct: 968 -IQNMKR 973
Score = 122 (48.0 bits), Expect = 5.2e-33, Sum P(3) = 5.2e-33
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE N++ L P + +L + Y NT++ + + P + HG
Sbjct: 239 LLPHQKQALAWMIARE-NSKEL--PPFWELRND----LYYNTIT-NFSVKERP--ENVHG 288
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 289 GILADDMGLGKTLTAIAVIL 308
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 341 (125.1 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 129/528 (24%), Positives = 245/528 (46%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
R TLI+ P ++ +W Q QH++ L+ +V+ + +L D+V+TT+N L+
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILT 535
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
++G + SP+ + WLRV+LDEGH + + N + + + L + RW+LTG
Sbjct: 536 HDYGTKGDSPLHSIRWLRVILDEGHAIRNP-N-AQQTKAVLDLESERRWVLTGTPIQ--- 590
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD 792
+ L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 591 -NSLKDLWSLLSFLKLKPF-IDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS 648
Query: 793 -LQTIPLC-IKE----VTFLNFTEEHAGTY----NELVVTVRR----NILMADWNDPSHV 838
++ P+ + E + + ++E Y NE T+ R ++A + D +
Sbjct: 649 KIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGL 708
Query: 839 ESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFI 898
LL +Q + + N S +G+ + + + M +++ +G D +E A
Sbjct: 709 --LLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSD---EECAIC 763
Query: 899 KYNLLNG--GNCLRHILCLDCVA--MDSEK--CSLPGCGFLYEMQSPEILTRPENPNPKW 952
+L +C H+ C C+ + +E+ P C ++ +L P P+
Sbjct: 764 LDSLTVPVITHCA-HVFCKPCICQVIQNEQPHAKCPLCR--NDIHEDNLLECP----PE- 815
Query: 953 PVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPD-KVIIFSQFLEHIHVIEQQL 1011
+ +D + S +W++++ L + K P+ K ++ SQF + +IE L
Sbjct: 816 ELARD--SEKKSDMEWTSSSKI--NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
Query: 1012 TVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMDGSASLGLDLSFVTRVFLME 1068
+G F + M +++S+ F++ + + LL + +GL+LS +RVFLM+
Sbjct: 872 KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMD 931
Query: 1069 PIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116
P W+ + E+Q R HR+G + + + ++ +VEE ML+ +Q+ R
Sbjct: 932 PAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK-IQNKKR 978
Score = 115 (45.5 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L PHQ+ A+ WM+ RE N++ L P + + + Y NT++ + + P + HG
Sbjct: 240 LLPHQKQALAWMVSRE-NSKEL--PPFWEQRND----LYYNTIT-NFSEKDRP--ENVHG 289
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+TA+++IL
Sbjct: 290 GILADDMGLGKTLTAIAVIL 309
Score = 41 (19.5 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 397 NSSRQVPKRNQVGLSYVVSNSCERPE 422
+SSR PKR + + Y+ S+ E E
Sbjct: 381 SSSR--PKRRKTAVQYIESSDSEEIE 404
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 330 (121.2 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
Identities = 124/520 (23%), Positives = 235/520 (45%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670
++RATLIV P ++ +W Q +QH+R + ++++ ++ + SL + DVV+TT+N
Sbjct: 414 VARATLIVCPLSVLSNWLDQFEQHIRTDVTVKVYLYYGSERNRSVSLLSEQDVVLTTYNV 473
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXX 730
LS+++G + SP+ V WLRV+LDEGH + + L +K + L + RW+L+G
Sbjct: 474 LSSDFGNKASSPLHNVKWLRVVLDEGHVVRNPNALQSKA--VLELQSERRWILSGTPIQ- 530
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARK 790
+ L L +L FL + + + W I RP G L L+ + K
Sbjct: 531 ---NSLKDLFMLLSFLKLKPFDVKEW-WSRIIQRPVTMGDRVGLKNLQALVKGITLRRTK 586
Query: 791 TDL---QTIPLCIKEVTFLNFTEEHAGTYNELVVTVR---RNILMADWNDPSHVESLLNP 844
+T+ + F+ + +G E V+ +NI+ + + + + + +
Sbjct: 587 NSKVGGRTLVQLPERRVFVQYVTL-SGMEREKYERVKGEGKNIVGRYFQEGTFMANYADV 645
Query: 845 KQWKFRSTTIRNLRLSCC---VAGHIKVTDAGEDIQETMDVLVEN---GLDPLSQEYAFI 898
T + LR CC + G+ D E + L++ L+ S E I
Sbjct: 646 L------TILMRLRQCCCHPSLVGNYTAADVPGTPSELRERLIQKITLVLNSGSDEECAI 699
Query: 899 KYNLLNGG--NCLRHILCLDCVA----MDSEKCSLPGCGFLYEMQSPEILTRPENPNPKW 952
+ L H+ C C+ + E+ P C ++++ E++ E P +
Sbjct: 700 CLDSLRQPVITYCAHVFCRPCICEVIRSEKEQAKCPLCRA--QIKTKELV---EYPGEQA 754
Query: 953 PVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLT 1012
D E ++R S+ L +L + E K ++ SQF + V+E L
Sbjct: 755 ETRSDTGE---NWRS-SSKALALMSNLLKLRNEDPTV---KSMVVSQFTGFLDVLEVALR 807
Query: 1013 VAGIKFAGMYSPMHSSNKIKSLDMFRHD---ASCLALLMDGSASLGLDLSFVTRVFLMEP 1069
G F + + + K+++ F+ + + LL + +GL+L+ ++VF+M+P
Sbjct: 808 EYGFSFTRLDGSLIQRARAKAIEDFQDSTPGSPTIMLLSLKAGGVGLNLTAASQVFVMDP 867
Query: 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
W+ + E+Q + R HR+G +R + + ++ +VEE M++
Sbjct: 868 AWNPAAEDQCVDRCHRLGQSRDVVITKFIVKDSVEENMVK 907
Score = 92 (37.4 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L HQ+ A+ WM RE N+ L P + + G YF V T + A P G
Sbjct: 226 LLSHQKQALSWMSSRE-NSNDLP-PFWEE---NKGLYFNVLT---NFAVKKRP--EKVLG 275
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ D+ GLGKT+T ++LI+
Sbjct: 276 GILADDMGLGKTLTTIALIV 295
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 197 (74.4 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 43/120 (35%), Positives = 67/120 (55%)
Query: 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG 1050
P+KV+IFSQF + +I L + +A M + +L+ FR+D L++
Sbjct: 981 PEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDVNVLIISL 1040
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A +GL+L+ VF+M+P W S+E Q I R HR+G +P+ V +R TVEE+ML+
Sbjct: 1041 KAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLK 1100
Score = 177 (67.4 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 57/234 (24%), Positives = 111/234 (47%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-SAHSLAWDYD----VVITT 667
SR TL+V P L+D W ++ + + + ++ +KP S D ++IT+
Sbjct: 569 SRTTLVVAPMSLLDQWHSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITS 628
Query: 668 FNRLSAEWGRRKKSP-MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGX 726
+ L +E+ ++ S + VHW RV+LDEGH + + + T K +IS + NRW++TG
Sbjct: 629 YGVLLSEFSQQSHSSGLFSVHWFRVVLDEGHNIRNRESKTAKACHSIS--SQNRWVITGT 686
Query: 727 XXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMI 786
++L L ++KF+ E + N W + P++++ ++Q + ++
Sbjct: 687 PIV----NKLDDLYSLIKFMRYEPWC-NYTYWQTFVSLPYQSKDVLKALNVVQSILEFLV 741
Query: 787 SARKTDLQ--------TIPLCIKEVTFLNFTEEHAGTYNELVV----TVRRNIL 828
R + + T+P ++ +L+F++ Y+ L TV NI+
Sbjct: 742 LRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTKAKSTVNANIV 795
Score = 101 (40.6 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 199 EDGFYFYVNTVSGDIATGTAPTMRDFH-GGMFCDEPGLGKTITALSLI 245
+D +FYVN +G+ T P +H GG+ DE GLGKTI LSLI
Sbjct: 497 DDNTHFYVNLYTGE-TTMLFPNSMPYHRGGILADEMGLGKTIEVLSLI 543
Score = 41 (19.5 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 626 DHWKTQIQQHVRPGQLHLFVW 646
+H K Q+ R L LF W
Sbjct: 344 EHLKASFAQNKRDHLLRLFTW 364
Score = 38 (18.4 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 19/87 (21%), Positives = 35/87 (40%)
Query: 819 LVVTVRRNILMADWNDPSHVESLLNPKQWKFRST-----TIRNLRLSCCVAGHIKVTDAG 873
L++ +L+++++ SH L + W FR IRN A H ++
Sbjct: 623 LIIITSYGVLLSEFSQQSHSSGLFSV-HW-FRVVLDEGHNIRNRESKTAKACH-SISSQN 679
Query: 874 EDIQETMDVLVENGLDPLSQEYAFIKY 900
+ ++ N LD L F++Y
Sbjct: 680 RWVITGTPIV--NKLDDLYSLIKFMRY 704
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 215 (80.7 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 79/294 (26%), Positives = 136/294 (46%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670
LS++TL+V P L+ W+++I+ V P +L + V+ + + A DYDVVITT+
Sbjct: 416 LSKSTLVVAPLALIKQWESEIKTKVEPSHRLRVLVYHGNARAKATDSLDDYDVVITTYGT 475
Query: 671 LSAEWG----RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGX 726
L++E KK+ + V+W R++LDE HT+ + N Q A +L A RW L+G
Sbjct: 476 LTSEHNAVTKNDKKAGIFSVYWYRIILDEAHTI-KNRN-AKATQAAYALDAEYRWCLSGT 533
Query: 727 XXXXXXXSQLSHLQPMLKFLHEEAYGQNQKA-WDGGILRPFEAEMEEGRS-RLLQLLHRC 784
+ L LQ +++FL + Y N A W I RP A G + LQ++ +
Sbjct: 534 PMQ----NNLDELQSLIRFLRIKPY--NDLANWKDQITRPL-ANGRGGLAIERLQVVLKA 586
Query: 785 MISARKTDLQTIPLCIKEVTFLNFTEEHAG--TYNELVVTVRRNILMADWN--------D 834
+ R D+ + +K + +++ G VV V + + + N
Sbjct: 587 FMKRRTKDVLKLNANLKPGEEADGEKKNPGFQIVKREVVKVAVDFMPGEKNFYERLEQRT 646
Query: 835 PSHVESLLNPKQWKFRSTTIRNLRL-SCCVAGHIKVTDAGEDIQETMDVLVENG 887
+ +E ++ + + LRL CC H + + D+ + DVL++ G
Sbjct: 647 DNSLEKMMGDSKIDYAGALTLLLRLRQCC--NHPDLVRS--DLAKDKDVLLQTG 696
Score = 181 (68.8 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 46/128 (35%), Positives = 72/128 (56%)
Query: 991 PD-KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049
PD K I+FS F + IE L+ AGI +A M + + SL+ R+ LL
Sbjct: 914 PDFKFIVFSVFTSMLDKIEPFLSRAGIGYARYDGSMRNDLREASLEKLRNHRGTRVLLCS 973
Query: 1050 GSA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
A +LGL+L+ +RV ++EP W+ +EEQ I R HR+ T + + + ++ TVEE++L
Sbjct: 974 LRAGALGLNLTAASRVVILEPFWNPFVEEQAIDRVHRLNQTVDVKIYKMIIKDTVEERIL 1033
Query: 1109 EFLQDTDR 1116
+ LQ+ R
Sbjct: 1034 D-LQERKR 1040
Score = 69 (29.3 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGTLADPPDG 258
GG+ D+ GLGKT+ A++L+L Q P DG
Sbjct: 357 GGILADDMGLGKTVQAIALMLTNQ----KPKDG 385
Score = 54 (24.1 bits), Expect = 2.4e-29, Sum P(4) = 2.4e-29
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
++++L PHQ+ V WM +E
Sbjct: 321 LRVQLLPHQRQGVNWMCAKE 340
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 317 (116.6 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 133/529 (25%), Positives = 233/529 (44%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQL-HLFVWTDHKKPSAHSLAWDYDVVITTFNRL 671
S+ATLI+ P ++ +W+ QIQ+H P Q + ++ + +L YDVV+T++ L
Sbjct: 441 SKATLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKEDANLD-HYDVVVTSYGTL 499
Query: 672 SAEWGRRKKS-P---MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXX 727
+ E+ K+ P + V W RV+LDEGHT+ + + A +L A +RW LTG
Sbjct: 500 ATEYKTESKATPQKGLFSVKWRRVVLDEGHTIRNPRS--KGFSAACALRADSRWALTGTP 557
Query: 728 XXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMIS 787
+ L L ++FL ++ ++ ++RP ++ + R LLQ L +
Sbjct: 558 IV----NTLKDLYSQIRFLGLTGGLEDFAVFNSVLIRPLMSDDPDSRL-LLQALMSTICL 612
Query: 788 ARKTDLQTI----PLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDP-----SHV 838
R+ D+ + P V + F Y+ + +L N+ SH+
Sbjct: 613 RRRKDMGFVNLRLPTLTSRVLRIKFHPHEKEKYDMFQSEAKGMLLDFKSNNKTGTTYSHL 672
Query: 839 -ESLLNPKQ----WKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQ 893
E +L +Q W + +L+ + H V ++I+ D+L + ++ SQ
Sbjct: 673 LEVILRLRQVCNHWALAKNRLD--KLAAILDKHQTVPLTPDNIKALQDML-QIRIE--SQ 727
Query: 894 EYAFIKYNLLNGG--NCLRHIL---CLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENP 948
E I ++L H C++ V + KC P C E+++ L P
Sbjct: 728 EICPICLDILETPVITACAHAFDHDCIEQVIVRQHKC--PICRA--EIENKSSLVAPAAD 783
Query: 949 NPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIE 1008
+ D + P S +K +E+ K +IFSQ+ + ++E
Sbjct: 784 LGE---NTDDVSADPDNPS-SKIEALIKILTAHGQVEATKT-----VIFSQWTSFLTLVE 834
Query: 1009 QQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA-SLGLDLSFVTRVFLM 1067
L AGI+FA + M S + +S+ F D C LL S S+GL+L + L
Sbjct: 835 PHLQNAGIQFARIDGKMTSIARDRSMRRFSTDPKCTVLLASLSVCSVGLNLVAANQAILA 894
Query: 1068 EPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116
+ W ++E+Q + R +R+G TR V L M ++E+++L +Q+ R
Sbjct: 895 DSWWAPAIEDQAVDRVYRLGQTRETTVWRLVMEDSIEDRVLA-IQEQKR 942
Score = 93 (37.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHG 226
L P+Q+ + WM+ +E + L ++G F ++ + +T P++ G
Sbjct: 355 LLPYQRQGLAWMISKENPGLPTSDNDVVQLWKKEGNKF--TNIATNFSTTAPPSLAS--G 410
Query: 227 GMFCDEPGLGKTITALSLIL-----KTQ----GTLADPPDGVKIIW 263
G+ D+ GLGKTI +SLIL KT+ TL P G+ W
Sbjct: 411 GILADDMGLGKTIQIISLILSNSQPKTKESSKATLIISPVGIMSNW 456
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 303 (111.7 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 142/552 (25%), Positives = 240/552 (43%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-SAHSLAWDYDVVITTFNRLSAE 674
TLI+ P L+ WK +++ H +P + + V+ + A ++A +DVV+TT+ L++
Sbjct: 743 TLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIA-SHDVVLTTYGVLTSA 801
Query: 675 WGRRKKSPMM-QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ + + + ++ W R++LDE HT+ S T + L++ RW LTG
Sbjct: 802 YKQDMANSIFHRIDWYRIVLDEAHTIKSWK--TQAAKATFELSSHCRWCLTGTPLQ---- 855
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL 793
++L L +L FLH E + N W I +P+E G + +L M+ K
Sbjct: 856 NKLEDLYSLLCFLHVEPWC-NWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETR 914
Query: 794 QTIPLCIKEV--TFLNFTE-EHAGTYNELVVTV-RRNILMADWNDPSHVESLLNPKQWKF 849
I E+ T + E E + + + +R+ + D + + L N +
Sbjct: 915 DKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFD-QFVAQGKVLHN-----Y 968
Query: 850 RSTTIRNLRL-SCCVAGHIKVTDAGEDIQETMDVL----VENGLDPLSQEY---AFIKYN 901
+ LRL CC + ++ A +D L ++N D +SQ A+I+
Sbjct: 969 ANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEV 1028
Query: 902 L--LNGGNCLRHILCLD---------CVAMDSEKCSL-----PGCGFLYEMQSPEILTRP 945
+ L GN +CL+ C +C L P CG ++ IL R
Sbjct: 1029 IQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRT--ILKRT 1086
Query: 946 ENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNK--ALPDKVIIFSQFLEH 1003
E + P D I + W ++ +L + LE K +K I+FSQ+
Sbjct: 1087 ELIS----CPTDSIFRVDVVKNWKESSKV--SELLKC-LEKIKKSGSGEKSIVFSQWTSF 1139
Query: 1004 IHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVT 1062
+ ++E L G +F + + K L F LLM A +GL+L+ +
Sbjct: 1140 LDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAAS 1199
Query: 1063 RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLK 1122
VFLM+P W+ ++EEQ I R HR+G R + V ++ TVEE+M + +Q R +R++
Sbjct: 1200 SVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQ-VQA--RKQRMIA 1256
Query: 1123 EELVKPEREGAR 1134
L E AR
Sbjct: 1257 GALTDEEVRSAR 1268
Score = 108 (43.1 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
Identities = 38/124 (30%), Positives = 55/124 (44%)
Query: 156 AASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLR-----HPLY--IDLATEDGFYFYVNT 208
A S + C L P+Q+ A+ WM E +V + HP + + E Y+N
Sbjct: 608 APSTLTC---NLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDERAPSIYLNI 664
Query: 209 VSGDIATGTAPTMRDF-HGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHN 267
SG+ AT PT GG+ D GLGKT+ ++LIL G P+ ++ N
Sbjct: 665 FSGE-ATIQFPTATQMARGGILADAMGLGKTVMTIALILARPGR--GNPENEDVLVADVN 721
Query: 268 GDPR 271
D R
Sbjct: 722 ADKR 725
>ASPGD|ASPL0000091433 [details] [associations]
symbol:AN11803 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003677 EMBL:BN001307 GO:GO:0004386 EMBL:AACD01000029
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 KO:K10524
RefSeq:XP_659565.1 ProteinModelPortal:Q5BBW9
EnsemblFungi:CADANIAT00008621 GeneID:2874833 KEGG:ani:AN1961.2
HOGENOM:HOG000190975 OMA:EDESLWY OrthoDB:EOG4P2T9K Uniprot:Q5BBW9
Length = 1502
Score = 197 (74.4 bits), Expect = 4.9e-28, Sum P(3) = 4.9e-28
Identities = 46/126 (36%), Positives = 75/126 (59%)
Query: 985 ESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCL 1044
E +KA +K+IIF + I + L + G+ F + + + + + L +FR
Sbjct: 875 EHSKA--EKIIIFYDNNNSAYWIAEGLELLGVDFRIYANTLKPTLREEYLILFREFEQVR 932
Query: 1045 ALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103
LLMD AS GL ++ +RV+++ PIW ++E Q I RAHR+G TRP+ VETL +R T+
Sbjct: 933 VLLMDLRQASHGLHIAQASRVYIVNPIWQPNIESQAIKRAHRIGQTRPVFVETLVLRDTL 992
Query: 1104 EEQMLE 1109
E+++L+
Sbjct: 993 EDKILQ 998
Score = 171 (65.3 bits), Expect = 4.9e-28, Sum P(3) = 4.9e-28
Identities = 44/127 (34%), Positives = 68/127 (53%)
Query: 609 RLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQ-LHLFVWTDHKKPSAHSLAWDYDVVI-- 665
R++L TLIVVP LVDHW ++I H + L L D P A YD+V+
Sbjct: 379 RIHLHSGTLIVVPPNLVDHWMSEIAMHTEGLKTLTLRSSADLTPPPEDLFA--YDIVLFS 436
Query: 666 -TTFNRLSAEWG-----RRKK-SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS 718
T F + + ++ RRK+ SP+ ++HWLRV++DEGH + + TN + +
Sbjct: 437 RTRFEKEADDFNGGGRDRRKEPSPLTKLHWLRVIVDEGHNVAGHGHKTNMSHLLDQIHVE 496
Query: 719 NRWLLTG 725
RW+++G
Sbjct: 497 RRWVVSG 503
Score = 97 (39.2 bits), Expect = 4.9e-28, Sum P(3) = 4.9e-28
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM- 221
+K L+P+Q+ + M+ RE + P ++ G +Y + G IA TM
Sbjct: 208 LKTPLYPYQRRSAATMIQREVQPHQMLDPRLQSCSSPTGQKYYYDKEKGKIARER--TMY 265
Query: 222 RDFHGGMFCDEPGLGKTITALSLILKTQGTLADPP 256
+ GG+ + G GKT+ L++IL T+G P
Sbjct: 266 SEACGGILAETMGCGKTLICLAVILATRGHFPQIP 300
Score = 38 (18.4 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 389 NSTAKKRANSSRQVPKRNQVGLSYVVSN 416
N+ +R + +RN+ LS V+SN
Sbjct: 651 NAVTSERQDIDYMFHQRNRKHLSRVISN 678
Score = 37 (18.1 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLF 644
L++ LI S + + Q+Q+H + ++ +F
Sbjct: 853 LTQTKLIATASAKLTYLLDQVQEHSKAEKIIIF 885
>ASPGD|ASPL0000095127 [details] [associations]
symbol:AN11804 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003677 EMBL:BN001307 GO:GO:0004386 EMBL:AACD01000029
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 KO:K10524
RefSeq:XP_659565.1 ProteinModelPortal:Q5BBW9
EnsemblFungi:CADANIAT00008621 GeneID:2874833 KEGG:ani:AN1961.2
HOGENOM:HOG000190975 OMA:EDESLWY OrthoDB:EOG4P2T9K Uniprot:Q5BBW9
Length = 1502
Score = 197 (74.4 bits), Expect = 4.9e-28, Sum P(3) = 4.9e-28
Identities = 46/126 (36%), Positives = 75/126 (59%)
Query: 985 ESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCL 1044
E +KA +K+IIF + I + L + G+ F + + + + + L +FR
Sbjct: 875 EHSKA--EKIIIFYDNNNSAYWIAEGLELLGVDFRIYANTLKPTLREEYLILFREFEQVR 932
Query: 1045 ALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103
LLMD AS GL ++ +RV+++ PIW ++E Q I RAHR+G TRP+ VETL +R T+
Sbjct: 933 VLLMDLRQASHGLHIAQASRVYIVNPIWQPNIESQAIKRAHRIGQTRPVFVETLVLRDTL 992
Query: 1104 EEQMLE 1109
E+++L+
Sbjct: 993 EDKILQ 998
Score = 171 (65.3 bits), Expect = 4.9e-28, Sum P(3) = 4.9e-28
Identities = 44/127 (34%), Positives = 68/127 (53%)
Query: 609 RLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQ-LHLFVWTDHKKPSAHSLAWDYDVVI-- 665
R++L TLIVVP LVDHW ++I H + L L D P A YD+V+
Sbjct: 379 RIHLHSGTLIVVPPNLVDHWMSEIAMHTEGLKTLTLRSSADLTPPPEDLFA--YDIVLFS 436
Query: 666 -TTFNRLSAEWG-----RRKK-SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS 718
T F + + ++ RRK+ SP+ ++HWLRV++DEGH + + TN + +
Sbjct: 437 RTRFEKEADDFNGGGRDRRKEPSPLTKLHWLRVIVDEGHNVAGHGHKTNMSHLLDQIHVE 496
Query: 719 NRWLLTG 725
RW+++G
Sbjct: 497 RRWVVSG 503
Score = 97 (39.2 bits), Expect = 4.9e-28, Sum P(3) = 4.9e-28
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM- 221
+K L+P+Q+ + M+ RE + P ++ G +Y + G IA TM
Sbjct: 208 LKTPLYPYQRRSAATMIQREVQPHQMLDPRLQSCSSPTGQKYYYDKEKGKIARER--TMY 265
Query: 222 RDFHGGMFCDEPGLGKTITALSLILKTQGTLADPP 256
+ GG+ + G GKT+ L++IL T+G P
Sbjct: 266 SEACGGILAETMGCGKTLICLAVILATRGHFPQIP 300
Score = 38 (18.4 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 389 NSTAKKRANSSRQVPKRNQVGLSYVVSN 416
N+ +R + +RN+ LS V+SN
Sbjct: 651 NAVTSERQDIDYMFHQRNRKHLSRVISN 678
Score = 37 (18.1 bits), Expect = 1.9e-13, Sum P(4) = 1.9e-13
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLF 644
L++ LI S + + Q+Q+H + ++ +F
Sbjct: 853 LTQTKLIATASAKLTYLLDQVQEHSKAEKIIIF 885
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 173 (66.0 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 49/166 (29%), Positives = 89/166 (53%)
Query: 959 IELQP-SYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLT----- 1012
+E +P S S+ T L ++L L + + ++V+IFSQF ++ ++E++LT
Sbjct: 982 LEFKPYSPASKSSKITALLKEL---QLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSK 1038
Query: 1013 -VAGI-KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070
VA I KF G S ++ + + + + LL + +GL+L+ + ++M+P
Sbjct: 1039 DVAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPW 1098
Query: 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116
W SME+Q I R HR+G T + V ++ ++EE+ML +Q+ R
Sbjct: 1099 WSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLR-IQEKKR 1143
Score = 148 (57.2 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 78/312 (25%), Positives = 131/312 (41%)
Query: 606 DSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYD--- 662
D+ + Y S+ TLIVVP L+ W + + ++ V+ S +L
Sbjct: 578 DNKKPYASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLKTLLTKTKTPP 637
Query: 663 -VVITTFNRLSAEWGRRKK-----------SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ 710
VV+TT+ + EW + K S + V++ R+++DEGH + + +T+K
Sbjct: 638 TVVLTTYGIVQNEWTKHSKGRMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAV 697
Query: 711 MAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEM 770
MA L +W+LTG ++L L ++KFL + + Q W + PFE++
Sbjct: 698 MA--LQGKCKWVLTGTPII----NRLDDLYSLVKFLELDPWRQINY-WKTFVSTPFESKN 750
Query: 771 EEGR----SRLLQ--LLHRCMISARKTDLQTIPLCIKEVTF--LNFTEEHAGTYNELV-- 820
+ + +L+ LL R K + L KEV L F++ Y L+
Sbjct: 751 YKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDK 810
Query: 821 --VTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAG-EDIQ 877
V+V+ I D LL K++ I LR CC G I D ED+
Sbjct: 811 AEVSVKSGIARGD---------LL--KKYSTILVHILRLRQVCCHPGLIGSQDENDEDLS 859
Query: 878 ETMDVLVENGLD 889
+ ++ E ++
Sbjct: 860 KNNKLVTEQTVE 871
Score = 112 (44.5 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 176 EWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDF-HGGMFCDEPG 234
+W W A+ L+ ++++ EDG +FY N SG+ + P ++ GG+ DE G
Sbjct: 480 KWPNDMSWAAQNLQQD-HVNV--EDGIFFYANLHSGEFSLAK-PILKTMIKGGILSDEMG 535
Query: 235 LGKTITALSLIL 246
LGKT+ A SL+L
Sbjct: 536 LGKTVAAYSLVL 547
Score = 46 (21.3 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 164 KLKLFPHQQAAVEWMLHRE 182
KL+L +Q+ + WML RE
Sbjct: 434 KLELRNYQKQGLTWMLRRE 452
Score = 41 (19.5 bits), Expect = 3.8e-14, Sum P(4) = 3.8e-14
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 646 WTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMM 684
W D+KKP A V ++ + S E+ + SP M
Sbjct: 576 WQDNKKPYASKTTLIV-VPMSLLTQWSNEFTKANNSPDM 613
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 194 (73.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
Identities = 41/135 (30%), Positives = 78/135 (57%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGS 1051
+K++++SQF +++ ++ L + I+ M ++ + KSL F +D L +L+
Sbjct: 742 EKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLK 801
Query: 1052 A-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
A S+GL+L+ V L EP ++ S+E+Q I R HR+G +P+ V + T+EE+++
Sbjct: 802 AGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSV 861
Query: 1111 LQDTDRCRRLLKEEL 1125
+ + R+L+KE L
Sbjct: 862 QR---KKRQLVKEAL 873
Score = 154 (59.3 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
Identities = 82/339 (24%), Positives = 143/339 (42%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQ-LHLFVWTDHKKPSAHSLAWD-YDVVITTFN 669
L + LIVV L+ W ++ V P + L +++ K + S YDVV+TT++
Sbjct: 299 LRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYS 358
Query: 670 RLSAEWGRR----KKSP----------MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL 715
L+ E + +P +++ W R++LDE HT+ + L K + L
Sbjct: 359 MLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKC--CVKL 416
Query: 716 TASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRP---FEAEMEE 772
A RW L+G + + +LKFL + Y + I RP + A++ E
Sbjct: 417 DAKYRWCLSGTPIQ----NHIDEFYSLLKFLRIKPYCV-WSLFAKDISRPLKSYRADIVE 471
Query: 773 GRSRLLQLLHRCMISAR--KTDLQTIPLC------IKEVTFLNFTEEHAGTYNELVVTVR 824
+ L++L + R +T + +P+ I+ V+ +N E YNE + + +
Sbjct: 472 AALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVS-VNLLPEERALYNEQMSSAQ 530
Query: 825 RNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLV 884
L+ ++ + H S ++ F ++ LR CC +K + + V
Sbjct: 531 S--LVDNYFNNDHDLS-----RYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSENV 583
Query: 885 ENG---LDPLSQEYAFIKYNLLNGGNCLRHILCLD-CVA 919
N LDPL+ E + L NC +CLD C+A
Sbjct: 584 RNACKSLDPLTIE----RIATLQDFNCS---VCLDPCLA 615
Score = 64 (27.6 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGTLADP 255
GG+ D+ GLGKTI ++L+L TQ + DP
Sbjct: 271 GGVMADDMGLGKTIQTIALLL-TQKS-QDP 298
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 156 (60.0 bits), Expect = 2.0e-22, Sum P(4) = 2.0e-22
Identities = 40/125 (32%), Positives = 69/125 (55%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K ++FS + + + +I + LT ++FA + S + + + +L F+HD LL+ +
Sbjct: 1535 KALVFSTWQDVLDIISKALTDNNMEFAQI-SRVKTFQE--NLSAFKHDPQINILLLPLHT 1591
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M L
Sbjct: 1592 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1651
Query: 1112 QDTDR 1116
+ +R
Sbjct: 1652 KTAER 1656
Score = 121 (47.7 bits), Expect = 2.0e-22, Sum P(4) = 2.0e-22
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT 215
P + L P+Q+ AV WML +E +E H L+ ++ T +G Y N +G I
Sbjct: 303 PALTPVLRPYQREAVNWMLQQEHFRSAPASENALHFLWREIVTSEGLKLYYNPYTGCIIR 362
Query: 216 GTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
GG+ DE GLGKT+ L+LIL
Sbjct: 363 EYPNAGPQLLGGILADEMGLGKTVEVLALIL 393
Score = 102 (41.0 bits), Expect = 2.0e-22, Sum P(4) = 2.0e-22
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 720 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLA-EQDIVIITYD 778
Query: 670 RLSAE 674
L +E
Sbjct: 779 VLRSE 783
Score = 83 (34.3 bits), Expect = 2.0e-22, Sum P(4) = 2.0e-22
Identities = 49/193 (25%), Positives = 81/193 (41%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
SP++ V W R+ LDE + +MA L+ NRW ++G L L
Sbjct: 811 SPLVAVEWWRICLDEAQMV--ECPAVKAAEMAQRLSGINRWCISGTPVQRG----LEDLF 864
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPF-EAEMEEGRSRLLQLLHRCMISARKT--DLQTIP 797
++ FL E Y W + RP+ + + S + ++L R SA+K D IP
Sbjct: 865 GLVVFLGIEPYCVKHW-WVRLLYRPYCKKNPQPLYSFIAKILWR---SAKKDVIDQIQIP 920
Query: 798 LCIKEVTFLNFT--------EEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKF 849
+E+ +L+F+ +H + VV +R+ ++DW + SL
Sbjct: 921 PQTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRK---ISDW--ALKLSSLDRRTVTSI 975
Query: 850 RSTTIRNLRLSCC 862
+R LR +CC
Sbjct: 976 LYPLLR-LRQACC 987
Score = 47 (21.6 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 869 VTDAGEDIQETMDVLVENGLDPLSQEYAF-IKYNLLNGGNCLRHILCLDCVAMDSEKC 925
VT AG DI + +V+ N S Y F L+ +C + CL C KC
Sbjct: 641 VTPAGGDIPHS-NVMSPNN----SSGYRFECICGELDQADCKPRVQCLKCQLWQHAKC 693
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 170 (64.9 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 57/210 (27%), Positives = 100/210 (47%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN--- 669
++ TL+V P V++W +Q+++H+R G L +V+ + ++ YD+VITT++
Sbjct: 583 TKTTLLVAPLSTVNNWVSQVKEHLRDGALTSYVFHGSSRTTSVDELSKYDLVITTYSIVL 642
Query: 670 -RLSAEWGRRK-KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXX 727
LS RR SP+ +++ R++LDE HT+ + Q L A RW +TG
Sbjct: 643 SELSGRGSRRAGSSPLTKMNMFRIVLDEAHTIREQS--AAQTQAIFRLNAQRRWSVTGTP 700
Query: 728 XXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMIS 787
++L L + KFL Y + ++ IL F+ G + +L L R ++
Sbjct: 701 IQ----NRLDDLLSVTKFLGIYPYDDRSR-FNMHILSRFKT----GDATVLASL-RVLVD 750
Query: 788 A----RKTDLQTIPLCIKEVTFLNFTEEHA 813
+ R D +P ++ L F+E A
Sbjct: 751 SFTLRRVKDKIDLPARHDKIVMLEFSESEA 780
Score = 166 (63.5 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 45/155 (29%), Positives = 80/155 (51%)
Query: 991 PDKVIIFSQFLEHIHVIEQQLTVAGIK-FAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049
P K ++FS + H+ +IE L G+ + + M + K+LD FR D + LL
Sbjct: 1014 PIKSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNKALDNFRDDNNTTILLAT 1073
Query: 1050 -GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
G+ +GL+L+ + V++MEP ++ + Q I R HR+G TR + M+ ++EE++
Sbjct: 1074 IGAGGVGLNLTAASHVYIMEPQYNPAAVAQAIDRVHRLGQTREVTTVQFIMKDSIEEKIA 1133
Query: 1109 EFLQDTDRCR--RLLKEELVKPE--REGARSHRTL 1139
E + + L + +L K E + R +R+L
Sbjct: 1134 ELAKKKQQLADMSLNRGKLDKAEVQEQRMREYRSL 1168
Score = 69 (29.3 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 167 LFPHQQAAVEWMLHRE-----WNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM 221
L HQ+ A+ +M +E E + L+ + + +G Y +SG + P
Sbjct: 474 LLRHQKQALWFMTEKEAPRKFGPKEEDNNSLWREEYSANGTKKYREVISGIVLDQEPPQS 533
Query: 222 RDFHGGMFCDEPGLGKTITALSLILKT 248
GG+ D GLGKT++ LSL++ +
Sbjct: 534 L---GGLLADMMGLGKTLSILSLVISS 557
Score = 50 (22.7 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 29/122 (23%), Positives = 53/122 (43%)
Query: 979 LYRPNLESN-KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF 1037
L PN ++N ++P KV I + L V+ + F+G + N++ D F
Sbjct: 887 LEEPNPDANGSSVPGKVDIIAFILPCFDVLCPEC------FSGRKQVFN--NRVGDQDSF 938
Query: 1038 RHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETL 1097
D C + +G S S +T L + + +++ E+Q +A +G H +T
Sbjct: 939 --DVKCD--VCEGWISASY--SAITAAGLQDYLMEQAREKQTRKQAKVLGEYEGPHTKTK 992
Query: 1098 AM 1099
A+
Sbjct: 993 AL 994
Score = 45 (20.9 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 436 VQCDACHKWRKLLDASVADATAA 458
V+CD C W + AS + TAA
Sbjct: 940 VKCDVCEGW---ISASYSAITAA 959
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 203 (76.5 bits), Expect = 9.6e-22, Sum P(4) = 9.6e-22
Identities = 55/151 (36%), Positives = 84/151 (55%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K IIFSQF + +I+ L AGI F M++ + KSLD+ R D+ LL
Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKC 731
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
+LGL+L+ +RV L + W+ ++EEQ I R HR+G R + V L + T+EE+++E L
Sbjct: 732 GALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVE-L 790
Query: 1112 QDTDRCRRLLKEELVKPEREGARSHR-TLHD 1141
Q+ R L K+ L ++ S + TL+D
Sbjct: 791 QNLKR--DLAKQALGDGKKSVFTSKKLTLND 819
Score = 122 (48.0 bits), Expect = 9.6e-22, Sum P(4) = 9.6e-22
Identities = 50/199 (25%), Positives = 89/199 (44%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA-HS---LAWDYDVVITTF- 668
++TL+V P L+ W++++Q + + + +K H + Y ++++ +
Sbjct: 289 KSTLVVAPLSLIKQWESEVQTKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSEWV 348
Query: 669 -NRLSAEWGR--------RKKSP-MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTA 717
+ + G+ KK P + +W R++LDE HT+ N ++K +A +L
Sbjct: 349 SHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIK---NKSSKSALACCALQG 405
Query: 718 SNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR--S 775
NRW LTG + + L ++KFLH + +Q W I P + EE
Sbjct: 406 INRWCLTGTPLQ----NNVDELYSLVKFLHINPFN-DQSVWKDQISLPL-CQGEENLVFK 459
Query: 776 RLLQLLHRCMISARKTDLQ 794
RL LL M+ KT L+
Sbjct: 460 RLRMLLSVIMLRRTKTLLE 478
Score = 62 (26.9 bits), Expect = 9.6e-22, Sum P(4) = 9.6e-22
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ D+ GLGKTI ++LIL
Sbjct: 257 GGILADDMGLGKTIQMIALIL 277
Score = 51 (23.0 bits), Expect = 9.6e-22, Sum P(4) = 9.6e-22
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 157 ASIMPCMKLKLFPHQQAAVEWMLHRE 182
+S +P M ++L HQ + W+ RE
Sbjct: 223 SSFIPGMHIRLLDHQVQGLTWLKSRE 248
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 137 (53.3 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 38/126 (30%), Positives = 67/126 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIK-SLDMFRHDASCLALLMD-G 1050
K ++FS + + + +I + L + F S ++ +K + +L F++D LL+
Sbjct: 1529 KSLVFSTWQDVLDIIAKALYDNNMTF----SQINGISKFQENLSAFKYDPKINILLLPLH 1584
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
+ S GL++ T V L+EPI + + E Q I R HR+G T+ V ++ T+EE+M
Sbjct: 1585 TGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQTM 1644
Query: 1111 LQDTDR 1116
L+ DR
Sbjct: 1645 LKTVDR 1650
Score = 126 (49.4 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 34/85 (40%), Positives = 44/85 (51%)
Query: 167 LFPHQQAAVEWMLHRE--WNA---EVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM 221
L P+Q AV WMLHRE N E H L+ ++ T DG Y N +G +
Sbjct: 302 LRPYQSEAVNWMLHRENFTNTPGGENALHFLWREVITLDGVKIYYNPFTGCVIREYPFAG 361
Query: 222 RDFHGGMFCDEPGLGKTITALSLIL 246
+ GG+ DE GLGKT+ L+LIL
Sbjct: 362 PQWPGGILADEMGLGKTVEVLALIL 386
Score = 102 (41.0 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFNRL 671
ATLI+ PS + W +I +HVR L + V+ KK H LA + DVVITT++ L
Sbjct: 717 ATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLA-EQDVVITTYDVL 775
Query: 672 SAE 674
E
Sbjct: 776 RTE 778
Score = 95 (38.5 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 46/171 (26%), Positives = 75/171 (43%)
Query: 661 YDVVITTFNRL-----SAEWGRR----KK-----SPMMQVHWLRVMLDEGHTLGSSLNLT 706
YDV+ T N + ++E GRR K+ SP++ V W R+ LDE +
Sbjct: 772 YDVLRTELNYVDIPHSNSEDGRRFRNQKRYMAIPSPLVAVEWWRICLDEAQMV--ECTTA 829
Query: 707 NKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF 766
+MA+ L+ NRW ++G L L ++ FL + Y WD + RP+
Sbjct: 830 KAAEMALRLSGINRWCVSGTPVQRG----LEDLYGLVLFLGIDPYWVKHW-WDQLLYRPY 884
Query: 767 EAEMEEGRSRLLQLLHRCMISARKTDL--QT-IPLCIKEVTFLNFT--EEH 812
+ L L+ + M + K D+ Q IP + + +L+F+ E H
Sbjct: 885 ---CRKNSQPLYSLIAKIMWRSAKKDVIDQIQIPPQTENIHWLHFSPVERH 932
Score = 42 (19.8 bits), Expect = 2.8e-13, Sum P(5) = 2.8e-13
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 184 NAEVLRHPLYIDLATEDGFYFYVNTVSGD 212
+ +VL+ PL +ATE+ + Y T+ D
Sbjct: 553 STDVLKIPLRTSIATEE--HDYCATIKND 579
Score = 40 (19.1 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 436 VQCDACHKWR 445
VQC CH W+
Sbjct: 675 VQCLKCHLWQ 684
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 137 (53.3 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 38/126 (30%), Positives = 67/126 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIK-SLDMFRHDASCLALLMD-G 1050
K ++FS + + + +I + L + F S ++ +K + +L F++D LL+
Sbjct: 1529 KSLVFSTWQDVLDIIAKALYDNNMTF----SQINGISKFQENLSAFKYDPKINILLLPLH 1584
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
+ S GL++ T V L+EPI + + E Q I R HR+G T+ V ++ T+EE+M
Sbjct: 1585 TGSNGLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTIVHRFLIKATIEERMQTM 1644
Query: 1111 LQDTDR 1116
L+ DR
Sbjct: 1645 LKTVDR 1650
Score = 126 (49.4 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 34/85 (40%), Positives = 44/85 (51%)
Query: 167 LFPHQQAAVEWMLHRE--WNA---EVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTM 221
L P+Q AV WMLHRE N E H L+ ++ T DG Y N +G +
Sbjct: 307 LRPYQSEAVNWMLHRENFTNTPGGENALHFLWREVITLDGVKIYYNPFTGCVIREYPFAG 366
Query: 222 RDFHGGMFCDEPGLGKTITALSLIL 246
+ GG+ DE GLGKT+ L+LIL
Sbjct: 367 PQWPGGILADEMGLGKTVEVLALIL 391
Score = 102 (41.0 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFNRL 671
ATLI+ PS + W +I +HVR L + V+ KK H LA + DVVITT++ L
Sbjct: 717 ATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLA-EQDVVITTYDVL 775
Query: 672 SAE 674
E
Sbjct: 776 RTE 778
Score = 95 (38.5 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 46/171 (26%), Positives = 75/171 (43%)
Query: 661 YDVVITTFNRL-----SAEWGRR----KK-----SPMMQVHWLRVMLDEGHTLGSSLNLT 706
YDV+ T N + ++E GRR K+ SP++ V W R+ LDE +
Sbjct: 772 YDVLRTELNYVDIPHSNSEDGRRFRNQKRYMAIPSPLVAVEWWRICLDEAQMV--ECTTA 829
Query: 707 NKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF 766
+MA+ L+ NRW ++G L L ++ FL + Y WD + RP+
Sbjct: 830 KAAEMALRLSGINRWCVSGTPVQRG----LEDLYGLVLFLGIDPYWVKHW-WDQLLYRPY 884
Query: 767 EAEMEEGRSRLLQLLHRCMISARKTDL--QT-IPLCIKEVTFLNFT--EEH 812
+ L L+ + M + K D+ Q IP + + +L+F+ E H
Sbjct: 885 ---CRKNSQPLYSLIAKIMWRSAKKDVIDQIQIPPQTENIHWLHFSPVERH 932
Score = 40 (19.1 bits), Expect = 1.3e-21, Sum P(5) = 1.3e-21
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 436 VQCDACHKWR 445
VQC CH W+
Sbjct: 675 VQCLKCHLWQ 684
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 135 (52.6 bits), Expect = 2.1e-21, Sum P(4) = 2.1e-21
Identities = 43/145 (29%), Positives = 71/145 (48%)
Query: 983 NLESNKALPD-KVIIFSQFLEHIHVIEQQLT----VAGIKFAGMYSPMHSSNKIKSLDMF 1037
NL++ K K I+FS + + +IE+ L + + F + + S + +D F
Sbjct: 1324 NLKNAKGKNQLKGIVFSHWTMFLDLIEESLIANDWIKDVDFCRIDGKLPISKREAIIDSF 1383
Query: 1038 RHDASC------LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRP 1091
+ ++ L L+ +GL+L V+LMEP W S+EEQ I R R+G TR
Sbjct: 1384 QAKSNNGNGGPRLMLMSITCGGIGLNLERANIVYLMEPSWTPSIEEQAIGRVDRIGQTRD 1443
Query: 1092 IHVETLAMRGTVEEQMLEFLQDTDR 1116
I V+ ++ T+E ML+ L D +
Sbjct: 1444 IFVKRFIIKKTIEVGMLK-LHDAKK 1467
Score = 126 (49.4 bits), Expect = 2.1e-21, Sum P(4) = 2.1e-21
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 163 MKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGT 217
++ KL HQ+ + WM RE N + L I L+ G FY N+ I
Sbjct: 570 LRSKLLEHQKEGIWWMRKRELEPFITNGQTLSEHWSIYLSKSSGVTFYYNSFCDKITMFE 629
Query: 218 APTMRDFHGGMFCDEPGLGKTITALSLILK 247
+ GGM CD+ GLGKT+ LSL LK
Sbjct: 630 PKGRKSISGGMLCDKMGLGKTLMILSLSLK 659
Score = 111 (44.1 bits), Expect = 2.1e-21, Sum P(4) = 2.1e-21
Identities = 35/137 (25%), Positives = 64/137 (46%)
Query: 682 PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQP 741
P++ +HW RV++DE H LQ +L + NRW LTG + + L P
Sbjct: 843 PLLCIHWWRVIIDESHKFKHKSLFFRSLQ---NLDSVNRWCLTGTPYQ----NNCTDLFP 895
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCI- 800
ML FL+ +N W ++ + + E+ + L + L+ ++S K D++ +
Sbjct: 896 MLYFLNVFPIAKNIATWRK-LVESIQDQSEK-KKILKKYLNPIILSRSKKDVRIQQNQVY 953
Query: 801 KEVTFLNFTEEHAGTYN 817
+E+ L F + + Y+
Sbjct: 954 EEIIELEFDQNESDAYS 970
Score = 79 (32.9 bits), Expect = 2.1e-21, Sum P(4) = 2.1e-21
Identities = 19/77 (24%), Positives = 42/77 (54%)
Query: 609 RLYLSRATLIVVPSYLVDHWKTQIQQHVRPG---QLHLFVW--TDHKKPSAHSLAWDYDV 663
++ L ++TL+++P ++ W+ Q++ H++P +L++ ++ T+ K + L D
Sbjct: 708 KITLPKSTLVILPFSVLKQWRNQLELHLQPDFLKKLNIIIYHGTNRKSITQDQLI-KADF 766
Query: 664 VITTFNRLSAEWGRRKK 680
V TT S E+ +K
Sbjct: 767 VFTTHQTFSIEYSFYEK 783
Score = 37 (18.1 bits), Expect = 1.9e-12, Sum P(4) = 1.9e-12
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 369 NLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRN 406
N+ + + + N+ N N K N ++ K N
Sbjct: 64 NILNNNNTNNTNNNNNNKNNNKNNNKNKNKNKNNNKNN 101
>UNIPROTKB|G4NCX0 [details] [associations]
symbol:MGG_00338 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 PROSITE:PS51194
GO:GO:0005524 EMBL:CM001235 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_003718744.1
EnsemblFungi:MGG_00338T0 GeneID:2674989 KEGG:mgr:MGG_00338
Uniprot:G4NCX0
Length = 1151
Score = 172 (65.6 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 47/136 (34%), Positives = 77/136 (56%)
Query: 604 PLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA--HSLAW-D 660
P S +LYLS A+L++VP+ L++ WK +I +H P L V T + P+ ++L+
Sbjct: 386 PEQSDKLYLSCASLVIVPTNLLEQWKDEITKHT-P-YLRTLVLTKARVPTPIPNALSLLQ 443
Query: 661 YDVVITTFNRLSAEWGRRKK---------SPMMQVHWLRVMLDEGHTLG-SSLNLTNKLQ 710
YD+++ + +R R K SP+ QVH+ R+++DEGH LG S+L + L
Sbjct: 444 YDIILVSMSRFERLIENRIKDRHGSWVLLSPLGQVHFKRIIIDEGHALGHSTLAKKSNLL 503
Query: 711 MAIS-LTASNRWLLTG 725
+ + L S RW++TG
Sbjct: 504 LVVEHLQTSARWVVTG 519
Score = 136 (52.9 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 32/120 (26%), Positives = 66/120 (55%)
Query: 992 DKVIIFSQFLEHIH-VIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD- 1049
+K+++F + E++ I L + I + + + + + F + +LMD
Sbjct: 904 EKILVFDE-TENVGWSIAGCLEILHIPHLIYAKNLKAERRAQYVATFNETSKFRVMLMDL 962
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A+ GL+++ +R++ + P+ + +E Q I RA R+G ++ + VETL +RGT+EE ++E
Sbjct: 963 KQAAFGLNMNSASRIYFVNPVLNPQVEAQAIGRARRIGQSKDVTVETLVLRGTLEELIVE 1022
Score = 89 (36.4 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 30/109 (27%), Positives = 51/109 (46%)
Query: 151 HLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHP--LYIDLATEDGFYFYVNT 208
+ R L +P +K +LF +Q+ A M RE P Y+ ED ++F +
Sbjct: 206 YCRSLLNCDIPGLKTQLFLYQREAAASMFQRETQPLQCIDPRLCYVVDQHEDPWFF--DC 263
Query: 209 VSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPD 257
++G++ + GG+ +E G GKT+ L+LI T+ A P+
Sbjct: 264 ITGEVLKD-GRSYEGVSGGILAEEMGSGKTLICLALIAATRQQPAYRPE 311
Score = 37 (18.1 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 27/97 (27%), Positives = 40/97 (41%)
Query: 380 ICNDRNAKGNSTAKKRAN----------SSRQVPKRN-QVGLSYVVSNSCERPEKVSTDH 428
I ++ +A G+ST K++N S+R V GL Y V SC ++S D
Sbjct: 484 IIDEGHALGHSTLAKKSNLLLVVEHLQTSARWVVTGTPSKGL-YGVDGSCTGRNELSDDQ 542
Query: 429 FACNETWVQCDACH-----KW-RKLLDASVADATAAW 459
+ + A H W K+L+ D TA W
Sbjct: 543 ERKDTEHIGSIATHYLNARPWANKVLEDG--DTTADW 577
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 148 (57.2 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 39/125 (31%), Positives = 68/125 (54%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K ++FS + + + +I + LT ++FA + S + + + +L F+ D LL+ +
Sbjct: 1530 KALVFSTWQDVLDIISKALTDNNMEFAQI-SRVKTFQE--NLSAFKRDPQINILLLPLHT 1586
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M L
Sbjct: 1587 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1646
Query: 1112 QDTDR 1116
+ +R
Sbjct: 1647 KTAER 1651
Score = 120 (47.3 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT 215
P + L P+Q+ AV WML +E E H L+ ++ T +G Y N +G I
Sbjct: 298 PALIPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIR 357
Query: 216 GTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
+ GG+ DE GLGKT+ L+LIL
Sbjct: 358 EYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
Score = 102 (41.0 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 715 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLA-EQDIVIITYD 773
Query: 670 RLSAE 674
L +E
Sbjct: 774 VLRSE 778
Score = 86 (35.3 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 49/193 (25%), Positives = 82/193 (42%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
SP++ V W R+ LDE + +MA L+ NRW ++G L L
Sbjct: 806 SPLVAVEWWRICLDEAQMV--ECPTVKAAEMAQRLSGINRWCISGTPVQRG----LEDLF 859
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPF-EAEMEEGRSRLLQLLHRCMISARKT--DLQTIP 797
++ FL E Y W + RP+ + + S + ++L R SA+K D IP
Sbjct: 860 GLVVFLGIEPYCVKHW-WVRLLYRPYCKKNPQHLYSFIAKILWR---SAKKDVIDQIQIP 915
Query: 798 LCIKEVTFLNFT--------EEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKF 849
+E+ +L+F+ +H ++VV +R+ ++DW + SL
Sbjct: 916 PQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRK---ISDW--ALKLSSLDRRTVTSI 970
Query: 850 RSTTIRNLRLSCC 862
+R LR +CC
Sbjct: 971 LYPLLR-LRQACC 982
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 939 PEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNT-FLKQDLYRPNL 984
P++L E+ P QD+ EL +Q T ++ D+ P L
Sbjct: 254 PDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
Score = 40 (19.1 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 436 VQCDACHKWR 445
VQC CH W+
Sbjct: 675 VQCLKCHLWQ 684
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 148 (57.2 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 39/125 (31%), Positives = 68/125 (54%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K ++FS + + + +I + LT ++FA + S + + + +L F+ D LL+ +
Sbjct: 1534 KALVFSTWQDVLDIISKALTDNNMEFAQI-SRVKTFQE--NLSAFKRDPQINILLLPLHT 1590
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M L
Sbjct: 1591 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1650
Query: 1112 QDTDR 1116
+ +R
Sbjct: 1651 KTAER 1655
Score = 120 (47.3 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT 215
P + L P+Q+ AV WML +E E H L+ ++ T +G Y N +G I
Sbjct: 298 PALIPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIR 357
Query: 216 GTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
+ GG+ DE GLGKT+ L+LIL
Sbjct: 358 EYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
Score = 102 (41.0 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 715 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLA-EQDIVIITYD 773
Query: 670 RLSAE 674
L +E
Sbjct: 774 VLRSE 778
Score = 86 (35.3 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 49/193 (25%), Positives = 82/193 (42%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
SP++ V W R+ LDE + +MA L+ NRW ++G L L
Sbjct: 806 SPLVAVEWWRICLDEAQMV--ECPTVKAAEMAQRLSGINRWCISGTPVQRG----LEDLF 859
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPF-EAEMEEGRSRLLQLLHRCMISARKT--DLQTIP 797
++ FL E Y W + RP+ + + S + ++L R SA+K D IP
Sbjct: 860 GLVVFLGIEPYCVKHW-WVRLLYRPYCKKNPQHLYSFIAKILWR---SAKKDVIDQIQIP 915
Query: 798 LCIKEVTFLNFT--------EEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKF 849
+E+ +L+F+ +H ++VV +R+ ++DW + SL
Sbjct: 916 PQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRK---ISDW--ALKLSSLDRRTVTSI 970
Query: 850 RSTTIRNLRLSCC 862
+R LR +CC
Sbjct: 971 LYPLLR-LRQACC 982
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 939 PEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNT-FLKQDLYRPNL 984
P++L E+ P QD+ EL +Q T ++ D+ P L
Sbjct: 254 PDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
Score = 40 (19.1 bits), Expect = 2.9e-21, Sum P(5) = 2.9e-21
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 436 VQCDACHKWR 445
VQC CH W+
Sbjct: 675 VQCLKCHLWQ 684
Score = 40 (19.1 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 1074 SMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL-----QDTDRCRRLLKEELVKP 1128
+++E+++ R R T +T + ++ E+ L+FL ++ ++C++L++E VK
Sbjct: 1162 TIDEELVQRV-RNEITSNYKQQTGKL--SMSEKGLQFLLTTQMEELNKCQKLVREA-VK- 1216
Query: 1129 EREGARSHRTLHDFAESNYLSHL 1151
EG S + ES + HL
Sbjct: 1217 NLEGPPSRNVI----ESATVCHL 1235
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 181 (68.8 bits), Expect = 3.5e-21, Sum P(5) = 3.5e-21
Identities = 47/173 (27%), Positives = 93/173 (53%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+NTNT N++ ++++ K+IIFSQ+ + + +I + L I+FA +H
Sbjct: 1681 TNTNTNTTNS--NINIKKDESI-QKIIIFSQWADVLEIISRALKENEIQFA---KAVHRG 1734
Query: 1029 NKIK-SLDMFRHDASCLALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ + +++ FR D + LL+ GL+L T VFL+EPI + ++E+Q I+R HR
Sbjct: 1735 SSFEMAINQFRKDPNVNVLLLPLIKGGNGLNLIEATHVFLVEPILNPALEKQAINRVHRF 1794
Query: 1087 GATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTL 1139
G + ++ ++ T+EE++++ Q ++ R+ E + + E + + L
Sbjct: 1795 GQNKETNIHRFIIKNTIEEKVVQMNQLKEQKRKNTNENTIDLDNEQLQKQQLL 1847
Score = 140 (54.3 bits), Expect = 3.5e-21, Sum P(5) = 3.5e-21
Identities = 54/197 (27%), Positives = 91/197 (46%)
Query: 606 DSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVI 665
D L SRATLIV P+ + W+ +I +H +++++ K + LA DYD+V+
Sbjct: 752 DETTLVGSRATLIVAPNTIFTQWQEEIVKHTNGLKVYIYNGIYKDKINPFQLA-DYDLVL 810
Query: 666 TTFNRLSAEW--------GRR--------KKSPMMQVHWLRVMLDEGHTLGSSLNLTNKL 709
TT++ LS + G++ KS + + W R+ LDE + SS + T
Sbjct: 811 TTYDVLSDDSICLTQISAGKQLRYTKIPTPKSALKCIKWWRICLDEAQMVESS-SQTKYK 869
Query: 710 QMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAE 769
++A+ L + RW LTG L + + +FL E + ++ W+ IL + A
Sbjct: 870 KLALGLESHYRWCLTGTPIQRS----LDDMFGLFEFLRLEPFS-SRYWWNCIILHKYLAL 924
Query: 770 MEEGRSRLLQLLHRCMI 786
G L H C++
Sbjct: 925 ---GEQSFLDWFH-CIV 937
Score = 68 (29.0 bits), Expect = 3.5e-21, Sum P(5) = 3.5e-21
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 184 NAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTA--PTMRD---FHGGMFCDEPGLGKT 238
N +++ HP++ + +FY N +G + +D GG+ DE GLGKT
Sbjct: 506 NNDII-HPIWSRFLVDKREFFY-NQFTGRLTLKEVLLSDKKDDLSLMGGILADEMGLGKT 563
Query: 239 ITALSLIL 246
+ L L+L
Sbjct: 564 VEFLGLVL 571
Score = 64 (27.6 bits), Expect = 3.5e-21, Sum P(5) = 3.5e-21
Identities = 37/148 (25%), Positives = 63/148 (42%)
Query: 361 RNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSY----VVSN 416
+N + N + +EE +D N KKR +++ NQ ++S
Sbjct: 623 KNNNNINNNQNNNNNEEEEEEDDNNNNNEIKKKKRKIIKKEIIL-NQGEFKRLNGDIISC 681
Query: 417 SCERPEKVSTDHFACNETWVQCDACHKWR--KLLDAS---VADATAAWFCS----MNSDP 467
C + E+ H N WV+C++C+K++ + AS + +FC+ + DP
Sbjct: 682 ICGKDEE---SHKRGN--WVKCNSCNKFQYSSCVWASNPRYRGISKFYFCTRCVTVPRDP 736
Query: 468 --THQSCGDPEEAWDNCQSITYLPGFHA 493
THQ D +E ++N T L G A
Sbjct: 737 SLTHQ---DDQEEYENRWDETTLVGSRA 761
Score = 61 (26.5 bits), Expect = 1.8e-20, Sum P(5) = 1.8e-20
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 167 LFPHQQAAVEWMLHREWNAEVLRHPL 192
L P+Q AV WML+RE N ++ PL
Sbjct: 460 LKPYQLKAVNWMLNRELNPKIDFSPL 485
Score = 43 (20.2 bits), Expect = 3.5e-21, Sum P(5) = 3.5e-21
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 911 HILCLDCVAMDSEKCSLPGC 930
H C DCV EK +P C
Sbjct: 1583 HSFCYDCVMFMIEK--VPNC 1600
Score = 43 (20.2 bits), Expect = 9.1e-17, Sum P(4) = 9.1e-17
Identities = 8/55 (14%), Positives = 24/55 (43%)
Query: 374 YDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDH 428
+ + +N N+ N N+ N++ N +Y++ ++ + P + ++
Sbjct: 61 HQQNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYIIIDNDDTPMSTTPEY 115
Score = 41 (19.5 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 996 IFSQFLEHIHVIEQQLT-VAGIKFAGMYSPMHSSN-----KIKSLDMFRHDASCLALLMD 1049
+F QF I++IE+Q+ ++ + +P +S+N K+K ++ + ++ + D
Sbjct: 1120 LFKQFKNQINLIEKQIEKLSNKENNNNNNPNNSNNQTIEEKLKDIEKIKE---IISNITD 1176
Query: 1050 GSASLGLD 1057
G + LD
Sbjct: 1177 GG-KINLD 1183
Score = 39 (18.8 bits), Expect = 2.3e-16, Sum P(4) = 2.3e-16
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 374 YDEESNICNDRNAKGNSTAKKRANSSRQVPKRN 406
+ + +N ++ N+ NS + +NS+ N
Sbjct: 385 FSDNNNSNSNSNSNSNSNSNSNSNSNSNSNNNN 417
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 153 (58.9 bits), Expect = 8.7e-21, Sum P(5) = 8.7e-21
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K ++FS + + + +I + LT ++FA + S + + + +L F+HD LL+ +
Sbjct: 1532 KALVFSTWQDVLDIISKALTDNNMEFAQI-SRVKTFQE--NLSAFKHDPQINILLLPLHT 1588
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M L
Sbjct: 1589 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1648
Query: 1112 QDTDR 1116
+ ++
Sbjct: 1649 KTAEK 1653
Score = 112 (44.5 bits), Expect = 8.7e-21, Sum P(5) = 8.7e-21
Identities = 32/92 (34%), Positives = 44/92 (47%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW------NAEVLRHPLYIDLATEDGFYFYVNTVSGDIA 214
P + L P+Q+ AV WML +E N L H L+ ++ T + Y N +G I
Sbjct: 300 PALIPVLRPYQREAVNWMLQQEHFRSAPTNENAL-HFLWREIVTPEDLKLYYNPYTGCII 358
Query: 215 TGTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
GG+ DE GLGKT+ L+LIL
Sbjct: 359 RDYPNAGPQLLGGILADEMGLGKTVEVLALIL 390
Score = 102 (41.0 bits), Expect = 8.7e-21, Sum P(5) = 8.7e-21
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 717 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLA-EQDIVIITYD 775
Query: 670 RLSAE 674
L +E
Sbjct: 776 VLRSE 780
Score = 84 (34.6 bits), Expect = 8.7e-21, Sum P(5) = 8.7e-21
Identities = 49/193 (25%), Positives = 81/193 (41%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
SP++ V W R+ LDE + +MA L+ NRW ++G L L
Sbjct: 808 SPLVAVEWWRICLDEAQMV--ECPAVKAAEMAQRLSGINRWCISGTPVQRG----LEDLF 861
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPF-EAEMEEGRSRLLQLLHRCMISARKT--DLQTIP 797
++ FL E Y W + RP+ + + S + ++L R SA+K D IP
Sbjct: 862 GLVVFLGIEPYCVKHW-WVRLLYRPYCKKNPQHLYSFIAKILWR---SAKKDVIDQIQIP 917
Query: 798 LCIKEVTFLNFT--------EEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKF 849
+E+ +L+F+ +H + VV +R+ ++DW + SL
Sbjct: 918 PQTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRK---ISDW--ALKLSSLDRRTVTSI 972
Query: 850 RSTTIRNLRLSCC 862
+R LR +CC
Sbjct: 973 LYPLLR-LRQACC 984
Score = 48 (22.0 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 933 LYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNT-FLKQDLYRPNL 984
LY P++L E + P Q++ EL +Q T ++ D+ P L
Sbjct: 250 LYNFVIPDVLEEDEEESESEPEGQEIDELYQFVKQTHQQETQSIQVDVQHPAL 302
Score = 40 (19.1 bits), Expect = 8.7e-21, Sum P(5) = 8.7e-21
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 436 VQCDACHKWR 445
VQC CH W+
Sbjct: 677 VQCLKCHLWQ 686
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 174 (66.3 bits), Expect = 9.1e-21, Sum P(3) = 9.1e-21
Identities = 52/151 (34%), Positives = 77/151 (50%)
Query: 959 IELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKF 1018
+EL+ S+ S +T K LY L+ N+ P KV++FSQ+L+ + V+ + GI F
Sbjct: 1178 MELKESFG--SKIDTISKHLLY---LKHNELYP-KVVVFSQWLDVLDVLHKSFEANGIVF 1231
Query: 1019 AGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEE 1077
+K L F+ + S L + S S GL L+ T VF+ EP+ + +E
Sbjct: 1232 IRF----DGKSKNTCLKRFKEERSLQVLTLHARSQSSGLTLTNATHVFMCEPLLNSGIEM 1287
Query: 1078 QVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
Q ISR HR+G TRP V + TVE +L
Sbjct: 1288 QAISRVHRIGQTRPTFVYYYIVEDTVEGHIL 1318
Score = 117 (46.2 bits), Expect = 9.1e-21, Sum P(3) = 9.1e-21
Identities = 46/165 (27%), Positives = 78/165 (47%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLA---WDYDVVITTFN 669
S+ATLI+ PS ++D W ++I HV P L +F + +K + A D D+V+T+++
Sbjct: 330 SKATLIITPSTILDQWLSEIDLHV-PS-LKVFHYQGIRKSNGLKSAKIFLDCDIVVTSYS 387
Query: 670 RLSAEW------------GRRK---KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714
L E +R KSP++ V W R+ +DE + +S + N QM
Sbjct: 388 DLRFELLYTESHSRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQS--NVAQMIYR 445
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFL-HEEAYGQNQKAW 758
+ N W ++G S++ L +L L + Y ++AW
Sbjct: 446 IPRVNCWTVSGTPVR----SEVDDLFGLLFLLRYSPMYLYKKQAW 486
Score = 103 (41.3 bits), Expect = 9.1e-21, Sum P(3) = 9.1e-21
Identities = 34/108 (31%), Positives = 47/108 (43%)
Query: 150 RHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRH---PLYIDLATE-DGFYFY 205
+ LR S P + +L P Q +EWM RE + + PL+ + D Y
Sbjct: 201 KSLRFANVSRDPRLSSELLPFQMRVLEWMKRREEEKFLTSNDLPPLWYHCKSLFDDRMVY 260
Query: 206 VNTVSGDIATGTAPTMR----DFHGGMFCDEPGLGKTITALSLILKTQ 249
VN V G + T D GG+ DE G+GKT+ L L+L Q
Sbjct: 261 VNHVYGYMTFSKEKTYLLASGDIRGGILADEMGMGKTLEVLGLVLHHQ 308
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 150 (57.9 bits), Expect = 9.1e-21, Sum P(5) = 9.1e-21
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K ++FS + + + +I + LT ++FA + S + + + +L F++D LL+ +
Sbjct: 1535 KALVFSTWQDVLDIISKALTDNNMEFAQI-SRVKTFQE--NLSAFKYDPQINILLLPLHT 1591
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M L
Sbjct: 1592 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1651
Query: 1112 QDTDR 1116
+ +R
Sbjct: 1652 KTAER 1656
Score = 121 (47.7 bits), Expect = 9.1e-21, Sum P(5) = 9.1e-21
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT 215
P + L P+Q+ AV WML +E +E H L+ ++ T +G Y N +G I
Sbjct: 303 PALTPVLRPYQREAVNWMLQQEHFKSTPASENALHFLWREIVTSEGLKLYYNPYTGCIIR 362
Query: 216 GTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
GG+ DE GLGKT+ L+LIL
Sbjct: 363 EYPNAGPQLLGGILADEMGLGKTVEVLALIL 393
Score = 102 (41.0 bits), Expect = 9.1e-21, Sum P(5) = 9.1e-21
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 720 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLA-EQDIVIITYD 778
Query: 670 RLSAE 674
L +E
Sbjct: 779 VLRSE 783
Score = 77 (32.2 bits), Expect = 9.1e-21, Sum P(5) = 9.1e-21
Identities = 47/193 (24%), Positives = 78/193 (40%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
SP++ V W R+ LDE + +MA L+ NRW ++G L L
Sbjct: 811 SPLVAVEWWRICLDEAQMV--ECPAVKAAEMAQRLSGINRWCISGTPVQRG----LEDLF 864
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL--QT-IP 797
++ FL E Y W + RP+ ++ L + + M + K D+ Q IP
Sbjct: 865 GLVVFLGVEPYCVRHW-WVRLLYRPY---CKKNPHFLYSFIAKIMWRSAKKDVIDQIQIP 920
Query: 798 LCIKEVTFLNFT--------EEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKF 849
+E +L+F+ +H + VV +R+ ++DW + SL
Sbjct: 921 PQTEETHWLHFSPVERHFYHRQHEVCCQDAVVKLRK---ISDW--ALKLSSLDRRTVTSI 975
Query: 850 RSTTIRNLRLSCC 862
+R LR +CC
Sbjct: 976 LYPLLR-LRQACC 987
Score = 41 (19.5 bits), Expect = 9.1e-21, Sum P(5) = 9.1e-21
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 427 DHFACNETWVQCDACHKWR 445
D C VQC CH W+
Sbjct: 672 DQVDCKPR-VQCLKCHLWQ 689
>DICTYBASE|DDB_G0274075 [details] [associations]
symbol:DDB_G0274075 "putative DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274075
dictyBase:DDB_G0273053 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_644396.1
RefSeq:XP_645017.1 ProteinModelPortal:Q556G6
EnsemblProtists:DDB0233427 EnsemblProtists:DDB0266337
GeneID:8618694 GeneID:8619282 KEGG:ddi:DDB_G0273053
KEGG:ddi:DDB_G0274075 OMA:KTIICIA ProtClustDB:CLSZ2431099
Uniprot:Q556G6
Length = 1518
Score = 155 (59.6 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 48/224 (21%), Positives = 103/224 (45%)
Query: 683 MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGX-XXXXXXXSQLSHLQP 741
+ Q++WLR+++DEGH +G+ N TN + L + +W+ +G ++L + +
Sbjct: 792 IFQINWLRIIIDEGHVIGNG-N-TNLSDNSSWLMSERKWVCSGTPISSSVLQTELINFKS 849
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTI----P 797
+ FL + + Q+ ++ I P +G R+ ++++R + ++Q P
Sbjct: 850 ICSFLSIQPFNQSVGYFNALISNPVNNFKIQGIERICEIMNRIAVKTPHNEIQEQIDLPP 909
Query: 798 LCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNL 857
L +K V L + YNELV ++ N+L + + +S + NL
Sbjct: 910 LSVKVVQ-LEMNDNEKLKYNELVTLIQVNLLASQYTGK---DSFTHADNQPLALQAFTNL 965
Query: 858 RLSCCVAGHIKVTDAGEDIQETMD--VLVENGLDPLSQEYAFIK 899
R +C +K + +D++E ++ +L + + P S + ++
Sbjct: 966 RKACFNCQPLKEKER-KDVRENIETALLKSDQIIPRSDKLKLLQ 1008
Score = 131 (51.2 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 35/124 (28%), Positives = 66/124 (53%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGI-KFAGMYSPMHSSNKIKSL-----DMFRHDASCLA 1045
+K I+FS F + + I TV+ I + + +Y + +K D D+
Sbjct: 1266 EKCIVFSAFNDTLKDIVW--TVSRIPELSRVYKIYMTELTLKQRANIVSDFQTKDSEFNI 1323
Query: 1046 LLMDGS-ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
++M+ A+ GL+++ + ++PIW S E+Q I R+HR+G T+P+ VE L + + E
Sbjct: 1324 IIMNSDLAAYGLNITAANHIIFVDPIWFASKEQQSIKRSHRIGQTKPVFVEKLIIENSCE 1383
Query: 1105 EQML 1108
+Q++
Sbjct: 1384 QQLI 1387
Score = 79 (32.9 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 219 PTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPP 256
P D GG+ C G GKTI ++LIL T G+ + P
Sbjct: 537 PKCDDVRGGILCQGMGTGKTIICIALILSTLGSQSKSP 574
Score = 75 (31.5 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 610 LYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN 669
L S TL++VP+ ++ W+ +I H + L + TD P L YDVV+ T
Sbjct: 674 LICSSGTLLIVPNQIIKQWQFEIMLHSKIKYL-VIENTDKLIPPPSELI-KYDVVLITNW 731
Query: 670 RLS 672
RLS
Sbjct: 732 RLS 734
Score = 45 (20.9 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 24/96 (25%), Positives = 41/96 (42%)
Query: 255 PPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMC---LGKRTFSQNARRRQLSVGKFTPM 311
PP VK++ N + + Y +L + N + GK +F+ +A + L++ FT +
Sbjct: 908 PPLSVKVVQLEMNDNEKLKYNELV-TLIQVNLLASQYTGKDSFT-HADNQPLALQAFTNL 965
Query: 312 DD--LKCPLLKRARLVDPGDEIEGFSSFSDVDMISP 345
C LK D + IE ++ D I P
Sbjct: 966 RKACFNCQPLKEKERKDVRENIE--TALLKSDQIIP 999
>DICTYBASE|DDB_G0273053 [details] [associations]
symbol:DDB_G0273053 "putative DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274075
dictyBase:DDB_G0273053 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_644396.1
RefSeq:XP_645017.1 ProteinModelPortal:Q556G6
EnsemblProtists:DDB0233427 EnsemblProtists:DDB0266337
GeneID:8618694 GeneID:8619282 KEGG:ddi:DDB_G0273053
KEGG:ddi:DDB_G0274075 OMA:KTIICIA ProtClustDB:CLSZ2431099
Uniprot:Q556G6
Length = 1518
Score = 155 (59.6 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 48/224 (21%), Positives = 103/224 (45%)
Query: 683 MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGX-XXXXXXXSQLSHLQP 741
+ Q++WLR+++DEGH +G+ N TN + L + +W+ +G ++L + +
Sbjct: 792 IFQINWLRIIIDEGHVIGNG-N-TNLSDNSSWLMSERKWVCSGTPISSSVLQTELINFKS 849
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTI----P 797
+ FL + + Q+ ++ I P +G R+ ++++R + ++Q P
Sbjct: 850 ICSFLSIQPFNQSVGYFNALISNPVNNFKIQGIERICEIMNRIAVKTPHNEIQEQIDLPP 909
Query: 798 LCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNL 857
L +K V L + YNELV ++ N+L + + +S + NL
Sbjct: 910 LSVKVVQ-LEMNDNEKLKYNELVTLIQVNLLASQYTGK---DSFTHADNQPLALQAFTNL 965
Query: 858 RLSCCVAGHIKVTDAGEDIQETMD--VLVENGLDPLSQEYAFIK 899
R +C +K + +D++E ++ +L + + P S + ++
Sbjct: 966 RKACFNCQPLKEKER-KDVRENIETALLKSDQIIPRSDKLKLLQ 1008
Score = 131 (51.2 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 35/124 (28%), Positives = 66/124 (53%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGI-KFAGMYSPMHSSNKIKSL-----DMFRHDASCLA 1045
+K I+FS F + + I TV+ I + + +Y + +K D D+
Sbjct: 1266 EKCIVFSAFNDTLKDIVW--TVSRIPELSRVYKIYMTELTLKQRANIVSDFQTKDSEFNI 1323
Query: 1046 LLMDGS-ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
++M+ A+ GL+++ + ++PIW S E+Q I R+HR+G T+P+ VE L + + E
Sbjct: 1324 IIMNSDLAAYGLNITAANHIIFVDPIWFASKEQQSIKRSHRIGQTKPVFVEKLIIENSCE 1383
Query: 1105 EQML 1108
+Q++
Sbjct: 1384 QQLI 1387
Score = 79 (32.9 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 219 PTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPP 256
P D GG+ C G GKTI ++LIL T G+ + P
Sbjct: 537 PKCDDVRGGILCQGMGTGKTIICIALILSTLGSQSKSP 574
Score = 75 (31.5 bits), Expect = 2.1e-20, Sum P(4) = 2.1e-20
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 610 LYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN 669
L S TL++VP+ ++ W+ +I H + L + TD P L YDVV+ T
Sbjct: 674 LICSSGTLLIVPNQIIKQWQFEIMLHSKIKYL-VIENTDKLIPPPSELI-KYDVVLITNW 731
Query: 670 RLS 672
RLS
Sbjct: 732 RLS 734
Score = 45 (20.9 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 24/96 (25%), Positives = 41/96 (42%)
Query: 255 PPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMC---LGKRTFSQNARRRQLSVGKFTPM 311
PP VK++ N + + Y +L + N + GK +F+ +A + L++ FT +
Sbjct: 908 PPLSVKVVQLEMNDNEKLKYNELV-TLIQVNLLASQYTGKDSFT-HADNQPLALQAFTNL 965
Query: 312 DD--LKCPLLKRARLVDPGDEIEGFSSFSDVDMISP 345
C LK D + IE ++ D I P
Sbjct: 966 RKACFNCQPLKEKERKDVRENIE--TALLKSDQIIP 999
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 181 (68.8 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 39/117 (33%), Positives = 63/117 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K I+FSQF + +I L +G+ + M + K +L F+ + C LLM A
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQA 586
Query: 1053 S-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ L+L+ + VF+M+P W+ ++E Q R HR+G +P+ V M TVEE++L
Sbjct: 587 GGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKIL 643
Score = 123 (48.4 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEW 675
TL++VP + W +I + PG + + K+ +YD V+TT + E+
Sbjct: 192 TLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPIVENEY 251
Query: 676 GRRK-----KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ + SP+ + W R+++DE H + + + T K A L A+ RW L+G
Sbjct: 252 RKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFA--LEATYRWALSG 304
Score = 74 (31.1 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 213 IATGTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
+A T + GG+ DE G+GKTI A+SL+L
Sbjct: 142 LAWATIQELSAVRGGILADEMGMGKTIQAISLVL 175
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 164 (62.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 53/198 (26%), Positives = 94/198 (47%)
Query: 611 YLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670
+ S TLI+ P+ L+ HWK ++++HV +L + ++ + + YD+VITT++
Sbjct: 640 FTSHGTLIICPASLIHHWKNEVEKHVSHNRLRVCLYHGPNRNQHAKVLSTYDIVITTYSL 699
Query: 671 LSAEWGRRKK---------------SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-S 714
L+ E K+ SP+++V W R++LDE H + + T+ MA+
Sbjct: 700 LAKEIPTAKQDEQIPGANPSVEGTSSPLLRVVWARLILDEAHNVKNPRVQTS---MAVCK 756
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR 774
L A RW +TG + L + +LKFL + + K W + + ++G
Sbjct: 757 LQAQARWAVTGTPIQ----NNLLDMYSLLKFLRCSPFDEF-KLWKSQV----DNGSKKGG 807
Query: 775 SRLLQLLHRCMISARKTD 792
RL +L R ++ R D
Sbjct: 808 ERL-NILTRSLLLRRTKD 824
Score = 130 (50.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 59/238 (24%), Positives = 106/238 (44%)
Query: 902 LLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQ-SPEILTRPENPNPKWPVPQD--- 957
LL C H+ L A+D + G E Q S L+ + P V +
Sbjct: 921 LLRLRQCCCHLSLLKS-ALDPTELKSEGLALSLEEQLSALTLSEFHDSEPSASVSLNGKS 979
Query: 958 -LIELQPSYRQWSNTNTFLKQ-DLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAG 1015
+EL R+ + ++ L + + R N S K+ +I SQ+ + V+ L G
Sbjct: 980 FKVELFDDKRESTKISSLLAELEAVRRNSGSQKS-----VIVSQWTSMLKVVALHLKRCG 1034
Query: 1016 IKFA---GMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWD 1072
+A G +P + +++ + R L L+ G +GL+L+ +FL++ W+
Sbjct: 1035 FTYATIDGSVNPKQRMDLVEAFNSPRGPQVMLISLLAGG--VGLNLTGGNHLFLLDMHWN 1092
Query: 1073 RSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDT--DRCRRLLK--EELV 1126
S+E+Q R +R+G + + + TVEE++L+ LQ+ D +++L EE V
Sbjct: 1093 PSLEDQACDRIYRVGQQKDVVIHKFVCEETVEEKILQ-LQEKKKDLAKQILSGSEEFV 1149
Score = 77 (32.2 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHN 267
GG+ D+ GLGKT+T ++LIL TQ + + + W + N
Sbjct: 595 GGILADDMGLGKTLTMIALIL-TQKKSKEKDETTALTWLSKN 635
Score = 62 (26.9 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L PHQ+ A+ W+L RE
Sbjct: 570 LKISLLPHQKQALAWLLWRE 589
Score = 37 (18.1 bits), Expect = 3.2e-16, Sum P(4) = 3.2e-16
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 525 ALTWLAKLSPDELSEMET 542
ALTWL+K E + T
Sbjct: 628 ALTWLSKNDSSEFTSHGT 645
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 145 (56.1 bits), Expect = 3.7e-20, Sum P(5) = 3.7e-20
Identities = 38/125 (30%), Positives = 68/125 (54%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K ++FS + + + +I + LT ++F + S + + + +L F++D LL+ +
Sbjct: 1521 KALVFSTWQDVLDIISKALTDNNMEFTQI-SRIKTFQE--NLSAFKYDPHINILLLPLHT 1577
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M L
Sbjct: 1578 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1637
Query: 1112 QDTDR 1116
+ +R
Sbjct: 1638 KTAER 1642
Score = 122 (48.0 bits), Expect = 3.7e-20, Sum P(5) = 3.7e-20
Identities = 33/91 (36%), Positives = 45/91 (49%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW-----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT 215
P + L P+Q+ AV WML +E A+ H L+ ++ T DG Y N +G I
Sbjct: 293 PALIPVLRPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTPDGLKLYYNPYTGCIIR 352
Query: 216 GTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
GG+ DE GLGKT+ L+LIL
Sbjct: 353 DFPHAGPQLLGGILADEMGLGKTVEVLALIL 383
Score = 101 (40.6 bits), Expect = 3.7e-20, Sum P(5) = 3.7e-20
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 706 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHFLA-EQDIVIITYD 764
Query: 670 RLSAE 674
L +E
Sbjct: 765 VLRSE 769
Score = 75 (31.5 bits), Expect = 3.7e-20, Sum P(5) = 3.7e-20
Identities = 35/137 (25%), Positives = 58/137 (42%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
SP++ V W R+ LDE + +MA L+ NRW ++G L L
Sbjct: 797 SPLVAVEWWRICLDEAQMV--ECPTVKAAEMAQRLSGINRWCISGTPVQRG----LEDLF 850
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL--QT-IP 797
++ FL E Y W + P+ ++ L + + M + K D+ Q IP
Sbjct: 851 GLVVFLGIEPYCVKHW-WIRLLYHPY---CKKNPQHLYSFIAKIMWRSAKKDVIDQIQIP 906
Query: 798 LCIKEVTFLNFT--EEH 812
+E+ +L+F+ E H
Sbjct: 907 PQTEEMHWLHFSPVERH 923
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 933 LYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQ-DLYRPNL 984
L+ P++L E + P QD+ EL +Q T Q D+ P L
Sbjct: 243 LHNFIIPDVLEEEEEGSESEPEGQDIDELYHFVKQTHQQETRSVQVDVQHPAL 295
Score = 42 (19.8 bits), Expect = 3.7e-20, Sum P(5) = 3.7e-20
Identities = 18/87 (20%), Positives = 32/87 (36%)
Query: 359 CTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSC 418
C V +N + D+++ D N A++ A S+ P Y C
Sbjct: 598 CASTDVHVSENTCVSEDKQTQEAKDCAESPNPAAEELAQSNTSSPCETS---DYRFECIC 654
Query: 419 ERPEKVSTDHFACNETWVQCDACHKWR 445
+++ ++ VQC CH W+
Sbjct: 655 GEFDQIG------HKPRVQCLKCHLWQ 675
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 143 (55.4 bits), Expect = 6.5e-20, Sum P(5) = 6.5e-20
Identities = 38/125 (30%), Positives = 67/125 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS 1051
K ++FS + + + +I + LT + F + S + + + +L F++D LL+ +
Sbjct: 1548 KALVFSTWQDVLDIISKALTDNNMGFTQI-SRIKTFQE--NLSAFKYDPQINILLLPLHT 1604
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
S GL + T V L+EPI + + E Q I R HR+G T+P V ++ T+EE+M L
Sbjct: 1605 GSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAML 1664
Query: 1112 QDTDR 1116
+ +R
Sbjct: 1665 KTAER 1669
Score = 124 (48.7 bits), Expect = 6.5e-20, Sum P(5) = 6.5e-20
Identities = 33/90 (36%), Positives = 45/90 (50%)
Query: 161 PCMKLKLFPHQQAAVEWMLHREW----NAEVLRHPLYIDLATEDGFYFYVNTVSGDIATG 216
P + L P+Q+ AV WML +E A+ H L+ ++ T DG Y N +G I
Sbjct: 292 PALIPVLRPYQREAVNWMLQQEQFRSTPADNSLHFLWREIVTPDGLNLYYNPYTGCIIRD 351
Query: 217 TAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
GG+ DE GLGKT+ L+LIL
Sbjct: 352 FPHAGPQLLGGILADEMGLGKTVEVLALIL 381
Score = 102 (41.0 bits), Expect = 6.5e-20, Sum P(5) = 6.5e-20
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS---AHSLAWDYDVVITTFN 669
+RATLI+ PS + W +I +HVR L + V+ KK H LA + D+VI T++
Sbjct: 713 TRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLA-EQDIVIITYD 771
Query: 670 RLSAE 674
L +E
Sbjct: 772 VLRSE 776
Score = 74 (31.1 bits), Expect = 6.5e-20, Sum P(5) = 6.5e-20
Identities = 35/137 (25%), Positives = 58/137 (42%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
SP++ V W R+ LDE + +MA L+ NRW ++G L L
Sbjct: 804 SPLVAVEWWRICLDEAQMV--ECPTVKAAEMAQRLSGINRWCVSGTPVQRG----LEDLF 857
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL--QT-IP 797
++ FL E Y W + P+ ++ L + + M + K D+ Q IP
Sbjct: 858 GLVVFLGIEPYCVKHW-WIRLLYHPY---CKKNPQHLYSFIAKIMWRSAKKDVIDQIQIP 913
Query: 798 LCIKEVTFLNFT--EEH 812
+E+ +L+F+ E H
Sbjct: 914 PQTEEMHWLHFSPVERH 930
Score = 51 (23.0 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 931 GFLYEMQSPEILTRPENPNPKWPVPQDLIEL 961
G LY + P++L E + P QD+ EL
Sbjct: 240 GKLYSLSIPDVLEEDEEESESEPEGQDIDEL 270
Score = 40 (19.1 bits), Expect = 6.5e-20, Sum P(5) = 6.5e-20
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 436 VQCDACHKWR 445
VQC CH W+
Sbjct: 673 VQCLKCHLWQ 682
Score = 37 (18.1 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 799 CIKEVTFLNFTEEHAGTYNELVVTV 823
C + V+ LN TE+ L VT+
Sbjct: 70 CTESVSILNSTEKETPLSVALNVTI 94
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 158 (60.7 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 44/146 (30%), Positives = 77/146 (52%)
Query: 985 ESNKAL---PD-KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD 1040
E NK PD K +IFSQ+ + ++E L + +F + + + ++ F+ +
Sbjct: 1678 ELNKVFKNEPDSKCLIFSQWTSMLDLLEYPLNLNQFQFVRLDGKIPQKQREVAIKRFKEE 1737
Query: 1041 ASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM 1099
+ L+ A LGL+L + VFLM+P W+ S EEQ I R +R+G + ++V +
Sbjct: 1738 PNVKIFLISIKAGGLGLNLVAASHVFLMDPWWNPSTEEQAIDRVYRIGQNKNVNVIRFLI 1797
Query: 1100 RGTVEEQMLEFLQDTDRCRRLLKEEL 1125
+ ++EE++L LQ + + L KE L
Sbjct: 1798 KDSIEERILN-LQKSKK--DLAKEAL 1820
Score = 125 (49.1 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 44/150 (29%), Positives = 70/150 (46%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
S + V W RV+LDE HT+ T+K A L + RW +TG ++L L
Sbjct: 1115 SGIHSVKWFRVVLDEAHTIKERSTRTSKATYA--LESIIRWCVTGTPIQ----NKLDDLF 1168
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD-LQTIPLC 799
+L FL E + N W+ IL+P + + + G SRL LL + ++ K + P+
Sbjct: 1169 SLLHFLRVEPF-HNYSWWNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQKINNTPIL 1227
Query: 800 -IKEVTFLN----FTEEHAGTYNELVVTVR 824
+ + T + F+EE Y +L T +
Sbjct: 1228 KLPDRTIMIKRDIFSEEEEQIYQDLWKTAK 1257
Score = 84 (34.6 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
S TLIV P ++ W ++I + P L+++++ + S +D+++TT+ L
Sbjct: 941 SNCTLIVCPVSVLQQWHSEIINNTNPS-LNVYIYHGPNRNRDRSFLMKHDIILTTYTTLV 999
Query: 673 AE 674
AE
Sbjct: 1000 AE 1001
Score = 65 (27.9 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ CD+ G+GKTI ++ IL
Sbjct: 884 GGLLCDDMGMGKTIEIIATIL 904
Score = 49 (22.3 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 164 KLKLFPHQQAAVEWMLHRE 182
KL L +Q+ A+ WM HRE
Sbjct: 842 KLTLRTYQRQALYWMHHRE 860
Score = 48 (22.0 bits), Expect = 6.3e-17, Sum P(5) = 6.3e-17
Identities = 15/73 (20%), Positives = 27/73 (36%)
Query: 335 SSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKK 394
SSF ++I + P V + N G + + +N N+ N N+
Sbjct: 259 SSFFGSEIIIDSCVDTAPPLQSVVPSNNYGNYYNQSINNTNNNTNNNNNNNNTNNNNNSY 318
Query: 395 RANSSRQVPKRNQ 407
+NS+ + Q
Sbjct: 319 NSNSNNTYTSKTQ 331
Score = 42 (19.8 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 44 PIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLD 103
PI + SG S + +R+ S+ + F D SS+ ++S+ +
Sbjct: 649 PIISHSGSGSSSSNYNNNTGYRYNGSYPSSPTSLSIPTSPIFLDNSQSSLLSVSNSSLAS 708
Query: 104 WKPDSS 109
+ P SS
Sbjct: 709 YSPSSS 714
Score = 40 (19.1 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 7 LQSLVNQKCLKIEARVMRVEIGENGAARAAVLVDIY 42
L L+ + +++E RV++V N +++Y
Sbjct: 581 LSILLEKNYIQVECRVLKVNNNNNNNNNIDYEINVY 616
Score = 39 (18.8 bits), Expect = 2.7e-19, Sum P(8) = 2.7e-19
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 900 YNLLNGGNCLRHILCL-----DC-VAMDS-EKCSLPGCGFLY 934
YN G CL+ IL +C + M++ E S+ CG +
Sbjct: 1347 YNQFELGKCLKKILGKGIKDQECTICMETLENPSITTCGHFF 1388
Score = 39 (18.8 bits), Expect = 5.2e-15, Sum P(8) = 5.2e-15
Identities = 24/107 (22%), Positives = 41/107 (38%)
Query: 375 DEESNICNDRNAKGNSTAKKRANSSRQV-PKR-NQVGLSYVVSNSCERPEKVSTDHFACN 432
+ +N N+ N N+ A + + P N S S + + P +S+ +
Sbjct: 1017 NNNNNNNNNNNNNNNNGIHHSAEHNNFIDPNNFNNESKSTPTSPTHQSP-LMSSFPMPLS 1075
Query: 433 ETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAW 479
T Q + HK ++L D + D T + NS+ S G W
Sbjct: 1076 PTQQQIQSKHKRKRLGDINENDETINSNNNNNSNSNITSSGIHSVKW 1122
Score = 38 (18.4 bits), Expect = 8.6e-16, Sum P(7) = 8.6e-16
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 370 LFHTYDEE---SNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYV-VSNSCE 419
LFH + SN N+ N N+ N++ V + + ++ + NS +
Sbjct: 736 LFHNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNVSSSSSITITNTTLDNSLD 789
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 173 (66.0 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 48/153 (31%), Positives = 82/153 (53%)
Query: 967 QWSNTNTF--LKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAG---IKFAGM 1021
+W ++ L ++LY+ L S++ K I+FSQF + +I+ +L AG +K +G
Sbjct: 676 EWRSSTKIEALVEELYK--LRSDRHTI-KSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGS 732
Query: 1022 YSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVI 1080
SP N IK F + L+ A + L+L ++VFLM+P W+ S+E Q +
Sbjct: 733 MSPQQRDNTIKH---FMENTEVEVFLVSLKAGGVALNLCEASQVFLMDPWWNPSVEWQSM 789
Query: 1081 SRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113
R HR+G RPI + + ++E +++E LQ+
Sbjct: 790 DRVHRIGQKRPIRITRFCIEDSIESKIIE-LQE 821
Score = 131 (51.2 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 34/121 (28%), Positives = 62/121 (51%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSA--- 673
L++ P+ + WK +I++H PG L + ++ + ++ YDV++T+++ L +
Sbjct: 290 LVIGPTVALMQWKNEIEKHTEPGMLKVLLYHGSNRSNSIQELSQYDVILTSYSVLESVYR 349
Query: 674 --EWG-RRK------KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLT 724
+G +RK KS + + + RV+LDE H + N +N + A L RW LT
Sbjct: 350 KQNYGFKRKNGLVKEKSAIHNIEFYRVILDEAHNI-KDRN-SNTSRAAGKLNTKKRWCLT 407
Query: 725 G 725
G
Sbjct: 408 G 408
Score = 66 (28.3 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 223 DFHGGMFCDEPGLGKTITALSLIL 246
+F+GG+ DE G+GKTI + L +
Sbjct: 258 EFNGGILADEMGMGKTIQTIGLFM 281
Score = 49 (22.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 16/84 (19%), Positives = 36/84 (42%)
Query: 161 PCMKLKLFPHQQAAVEWMLHRE---WNAEVLRHPLYIDLATED-GFYFYVNTVSGDIATG 216
P M +KL P Q + W++ +E +N +L + + + G + + + ++ G
Sbjct: 234 PGMTIKLLPFQLEGLNWLIKQEDGEFNGGILADEMGMGKTIQTIGLFMHDRSKGPNLVIG 293
Query: 217 TAPTMRDFHGGMFCD-EPGLGKTI 239
+ + + EPG+ K +
Sbjct: 294 PTVALMQWKNEIEKHTEPGMLKVL 317
Score = 46 (21.3 bits), Expect = 5.0e-17, Sum P(3) = 5.0e-17
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 375 DEESNICNDRNAKG-----NSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHF 429
D ES+ +D + G + + R R+ R +SY S+ + + + +D F
Sbjct: 10 DNESSSDSDTSNIGGGFIIDDISTTRTKRPRRAAARKAANISYAESSDDQESDSIDSDTF 69
Query: 430 A 430
A
Sbjct: 70 A 70
Score = 38 (18.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 84 CFKDGCDSSIWNISD 98
C K C S W SD
Sbjct: 435 CTKCDCKSEDWKFSD 449
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 183 (69.5 bits), Expect = 5.2e-19, Sum P(6) = 5.2e-19
Identities = 44/158 (27%), Positives = 86/158 (54%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
K +K I+FSQ+ + ++++E L + I++ + M + + K++ F ++
Sbjct: 1120 KVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMI 1179
Query: 1048 MD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
M +ASLGL++ V +++ W+ + E+Q I RAHR+G TRP+ V ++ TVE++
Sbjct: 1180 MSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDR 1239
Query: 1107 MLEFLQDTDRCRRLLKEELVKPEREGAR-SHRTLHDFA 1143
+L Q +R++ + +G+R SH T+ D +
Sbjct: 1240 ILALQQK----KRMMVASAFGEDEKGSRQSHLTVEDLS 1273
Score = 82 (33.9 bits), Expect = 5.2e-19, Sum P(6) = 5.2e-19
Identities = 34/144 (23%), Positives = 59/144 (40%)
Query: 682 PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQP 741
P+ +V W RV+LDE ++ + T + L A RW L+G + + L
Sbjct: 781 PLAKVSWFRVVLDEAQSIKNYK--TQVARACWGLRAKRRWCLSGTPIQ----NSIDDLYS 834
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQ------T 795
+FL + Y + + I P +G +L +L M+ K L +
Sbjct: 835 YFRFLKYDPYS-SYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIIS 893
Query: 796 IPLCIKEVTFLNFTEEHAGTYNEL 819
+P E+ ++FT E Y++L
Sbjct: 894 LPPKSIELRKVDFTVEERDFYSKL 917
Score = 78 (32.5 bits), Expect = 5.2e-19, Sum P(6) = 5.2e-19
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDH---KKPSAHSLAWDYDVVITTFNRLS 672
TL+V P+ ++ W ++ + V + +L V H + H LA YDVV+TTF+ +S
Sbjct: 667 TLVVCPTSVMRQWADELHKKVT-SEANLSVLVYHGSSRTKDPHELA-KYDVVVTTFSIVS 724
Query: 673 AE 674
E
Sbjct: 725 ME 726
Score = 70 (29.7 bits), Expect = 5.2e-19, Sum P(6) = 5.2e-19
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 226 GGMFCDEPGLGKTITALSLILK 247
GG+ D+ GLGKT++ ++LILK
Sbjct: 579 GGILADDQGLGKTVSTIALILK 600
Score = 48 (22.0 bits), Expect = 5.2e-19, Sum P(6) = 5.2e-19
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 80 DGGECFKDGCDSSIWNISDCH-VLDWKPDSSRVKPEDNS 117
DGG F+D D +I +I + +LD KPDS+ E+ S
Sbjct: 20 DGGFEFEDD-DETI-DIETLYRILDEKPDSAEGSQENLS 56
Score = 48 (22.0 bits), Expect = 3.0e-09, Sum P(4) = 3.0e-09
Identities = 25/90 (27%), Positives = 34/90 (37%)
Query: 234 GLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLTCNNMCLGKRT 293
GL K L G D P+ C H +C Y L+GD +N C
Sbjct: 971 GLAKKQIQSDASLAICGICNDAPEDAVASVCGHVFCKQCIYERLTGD----SNHC----P 1022
Query: 294 FSQ-NARRRQLSVGKFTPMDDLKCPLLKRA 322
F+ N R S+ T +DD + +RA
Sbjct: 1023 FANCNVRLTISSLSSKTRLDDAMPDMQERA 1052
Score = 45 (20.9 bits), Expect = 5.2e-19, Sum P(6) = 5.2e-19
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 158 SIMP--CMKLKLFPHQQAAVEWMLHRE 182
+I+P + + L HQ+ A+ WM +E
Sbjct: 545 AILPDGVLTVPLLRHQRIALSWMAQKE 571
Score = 44 (20.5 bits), Expect = 4.8e-16, Sum P(5) = 4.8e-16
Identities = 22/118 (18%), Positives = 50/118 (42%)
Query: 325 VDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDR 384
V P + + + SD+D + S + + + + +K ++ + E ++ +D
Sbjct: 301 VKPYNSFDSHLADSDLDRPNNYSCSFQDNKTVHVKVKPEAESEKVVYSSVPGEFSVRDDA 360
Query: 385 NAKGNSTAKKRANSSRQVPKRNQV--GLSYVVSNSC---ERPEKVSTDHFACNETWVQ 437
G + SS V + + G SY+ + + K+S++HF ++T +Q
Sbjct: 361 YLSGETNRWWSGASSSAVSYQTDIEKGYSYMAPQTALPSQDSGKISSNHFYDSDTCLQ 418
Score = 41 (19.5 bits), Expect = 5.3e-15, Sum P(6) = 5.3e-15
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 884 VENGLDPLSQEYAFIKYN 901
++N +D L + F+KY+
Sbjct: 825 IQNSIDDLYSYFRFLKYD 842
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 175 (66.7 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 65/237 (27%), Positives = 114/237 (48%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
S+ TLI+ P+ LV HWK +I + V+ +L ++++ + + S+ ++DVVITT++ +S
Sbjct: 624 SQGTLIICPASLVHHWKKEIDKRVKSSRLTVYLYHGPNRQRSASVLAEHDVVITTYSLVS 683
Query: 673 AEWGRRKKS----------------PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SL 715
E +K+ P+++V W RV+LDE H++ + T+ MA+ L
Sbjct: 684 KEIPVQKEDAEKPSKDSDHVASDLPPLLRVAWARVILDEAHSIKNPKVQTS---MAVCKL 740
Query: 716 TASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAW----DGGILRPFEAEME 771
A +RW +TG + L + +LKFL + + K W D G R E
Sbjct: 741 RARSRWAVTGTPIQ----NNLLDMYSLLKFLRCSPFDE-YKLWKAQVDNGSKRGGERLNI 795
Query: 772 EGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNIL 828
R+ LL+ + + A L ++P E+ L +E+ Y ++V R+ L
Sbjct: 796 LTRALLLRRT-KDQLDATGKPLVSLPDRTCEIHRLKLSEDEQAVY-DVVFAQSRSTL 850
Score = 114 (45.2 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 41/216 (18%), Positives = 94/216 (43%)
Query: 902 LLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEI-LTRPENPNPKWPVPQDLIE 960
LL C H+ L +D + G E Q + L+ P + K V +
Sbjct: 905 LLRLRQCCCHLSLLK-KTLDQSELQGDGVALSLEEQLCALSLSEPSDSENKDTVSLNGSH 963
Query: 961 LQPSYRQWSNTNTFLKQDLYRPN-LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFA 1019
Q + +T + L + + S++ +I SQ+ + ++ L G+KFA
Sbjct: 964 FSSELFQDTRESTKISSILTESDFIHSDRNCQKSFVIVSQWTSMLKIVAVHLEKMGLKFA 1023
Query: 1020 GMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFV--TRVFLMEPIWDRSMEE 1077
+ ++ ++ ++ F + +++ + G+ ++ + +FL++ W+ ++E+
Sbjct: 1024 VIDGTVNPKRRMDLVEEFNTNPKGPQVMLVSLCAGGVGINLIGGNHLFLIDMHWNPALED 1083
Query: 1078 QVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113
Q R +R+G ++ + + GTVE++ + LQ+
Sbjct: 1084 QACDRIYRVGQSKDVTIHRFVCDGTVEDK-ISSLQE 1118
Score = 66 (28.3 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ D+ GLGKT+T ++LIL
Sbjct: 581 GGILADDMGLGKTLTMIALIL 601
Score = 62 (26.9 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K++L PHQ+ A+ W+L RE
Sbjct: 556 LKVELLPHQKRALTWLLWRE 575
Score = 46 (21.3 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 359 CTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSC 418
C + VK+N + E+N+ D+ + + ++ S Q P ++ GL SN
Sbjct: 229 CPESSNPVKENDKGQTESENNL-KDQQEQ----SPRKTGGSAQSPSKSSPGLDKKTSNK- 282
Query: 419 ERPEKVSTDHFACNETWVQCDAC 441
+ S ++T Q +C
Sbjct: 283 ---QSTSNSKSGSDKTQSQSPSC 302
Score = 40 (19.1 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 467 PTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLK 512
P+ QS P A ++IT PGF G+ ++ S LK
Sbjct: 356 PSQQSA--PTPAVPVQKTITSYPGFQIASKVQGQSEDPRALHSQLK 399
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 175 (66.7 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K I+FSQF + +I L G+ + M + + +++ F+ D C LM A
Sbjct: 682 KAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKA 741
Query: 1053 S-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ L+L+ + VF+M+P W+ ++E Q R HR+G +PI V + TVEE++L
Sbjct: 742 GGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERIL 798
Score = 85 (35.0 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEW 675
TL++ P V W +I + PG + V+ K+ +YD V+TT++ + +E+
Sbjct: 196 TLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESEY 255
Query: 676 GRRKKSP 682
RR P
Sbjct: 256 -RRNIMP 261
Score = 80 (33.2 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 678 RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLS 737
++KS + V W R++LDE H + +N + +L A+ RW L+G +++
Sbjct: 344 KEKSLLHSVKWNRIILDEAHYIKE--RRSNTARAVFALEATYRWALSGTPLQ----NRVG 397
Query: 738 HLQPMLKFLHEEAY 751
L +++FL Y
Sbjct: 398 ELYSLIRFLQIRPY 411
Score = 70 (29.7 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ DE G+GKTI A+SL+L
Sbjct: 159 GGILADEMGMGKTIQAISLVL 179
Score = 41 (19.5 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 365 QVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVG 409
Q K+ T D S + +A + KK ++Q +++Q+G
Sbjct: 296 QSKQKRKKTSDSSSQQGKEADAGEDKKLKKSKKKTKQTVEKDQLG 340
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 155 (59.6 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 54/230 (23%), Positives = 104/230 (45%)
Query: 611 YLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670
+ S TLI+ P+ L+ HWK ++++ V +L ++++ + S + YD+VITT++
Sbjct: 639 FTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSL 698
Query: 671 LSAEWGRRKK---------------SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-S 714
++ E K+ +P++++ W R++LDE H + + T+ +A+
Sbjct: 699 VAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTS---IAVCK 755
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR 774
L A RW +TG + L + +LKFL + + W + + ++G
Sbjct: 756 LQACARWAVTGTPIQ----NNLLDMYSLLKFLRCSPFDEFN-LWRSQV----DNGSKKGG 806
Query: 775 SRLLQLLHRCMISARKTDLQTI--PLCIK-----EVTFLNFTEEHAGTYN 817
RL L ++ K L + PL I ++ L +E+ YN
Sbjct: 807 ERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYN 856
Score = 140 (54.3 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 34/131 (25%), Positives = 69/131 (52%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
++ N A K +I SQ+ + V+ L G+ +A + ++ ++ ++ F H
Sbjct: 1003 IQRNSA-SQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGP 1061
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
+L+ A +GL+L+ +FL++ W+ S+E+Q R +R+G + + + GT
Sbjct: 1062 QVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGT 1121
Query: 1103 VEEQMLEFLQD 1113
VEE++L+ LQ+
Sbjct: 1122 VEEKILQ-LQE 1131
Score = 73 (30.8 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 226 GGMFCDEPGLGKTITALSLIL--KTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLT 283
GG+ D+ GLGKT+T ++LIL K Q + + W + D C + G +
Sbjct: 591 GGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLSK--DDSCDFTS-HGTLII 647
Query: 284 C 284
C
Sbjct: 648 C 648
Score = 50 (22.7 bits), Expect = 1.1e-18, Sum P(4) = 1.1e-18
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L HQ+ A+ W+L RE
Sbjct: 566 LKVPLLLHQKQALAWLLWRE 585
Score = 42 (19.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 142 LVRIAATCRHLRCLAASIMPCMKLK 166
L+R+ C HL L +++ P M+LK
Sbjct: 920 LLRLRQCCCHLSLLKSALDP-MELK 943
Score = 37 (18.1 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1001 LEHIHVIEQQLTVAGIKFAGMYSPMHS 1027
L H+ + E + TV + FA S + S
Sbjct: 842 LHHLKLSEDEETVYNVFFARSRSALQS 868
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 138 (53.6 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 28/124 (22%), Positives = 69/124 (55%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD--ASCLALLMD 1049
+KV+I SQ+ +++IE + +G K+ + + ++ + +D F + + + LL
Sbjct: 934 EKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFNREKGGARVMLLSL 993
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+L+ + +++ W+ ++E+Q R +RMG + + + L +GT+E++++
Sbjct: 994 AAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRLVTKGTIEQRVVM 1053
Query: 1110 FLQD 1113
+D
Sbjct: 1054 LQKD 1057
Score = 107 (42.7 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 46/164 (28%), Positives = 77/164 (46%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
S + Q+ W RV+LDE HT+ + +L +K L+A +RW L+G + L L
Sbjct: 643 SVLAQICWSRVILDEAHTIKNRQSLASKA--VCRLSAFSRWCLSGTPIH----NNLWDLY 696
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQ---LLHR-----CMISARKTD 792
+++FL + + K W I+ P + M + R LL LL R C ++ +K
Sbjct: 697 SLVRFLRIRPFSDD-KYWKESIM-PMKPIMAD-RVNLLTKNLLLRRTKDQTCAVTNQKL- 752
Query: 793 LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNI--LMADWND 834
+Q P + EV L + A Y ++ ++ + L+ D ND
Sbjct: 753 VQLPPKNV-EVHELELDGDEAQAYEIMMEAAKKFVKKLLQDSND 795
Score = 95 (38.5 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP---SAHSLAWDYDVVITTFN 669
S TLIV P+ L+ W +I + + L +++ KK A LA YDVVITTFN
Sbjct: 545 SNGTLIVAPASLIHQWDAEIDRRLDDSVLSTYMFHGTKKQRDIDARRLA-RYDVVITTFN 603
Query: 670 RLSAE 674
++ E
Sbjct: 604 LIANE 608
Score = 61 (26.5 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 164 KLKLFPHQQAAVEWMLHRE 182
KL+L PHQ+A + WM RE
Sbjct: 468 KLELMPHQKAGLTWMRWRE 486
Score = 61 (26.5 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT++ +SLI
Sbjct: 492 GGILADDMGLGKTLSMISLI 511
Score = 37 (18.1 bits), Expect = 1.8e-18, Sum P(6) = 1.8e-18
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 864 AGHIKVTDAGEDIQETMDVLVENG 887
A V D E +++TM++ + NG
Sbjct: 872 AEEANVDDLNELLEKTMNMTLGNG 895
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 172 (65.6 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 42/150 (28%), Positives = 82/150 (54%)
Query: 967 QWSNTNTF--LKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSP 1024
+W ++ L ++LY+ L SNK K I+FSQF + ++E +L AG + +
Sbjct: 614 KWQSSTKIEALVEELYK--LRSNKRTI-KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGS 670
Query: 1025 MHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRA 1083
M + + +++ F ++ C L+ A + L+L ++VF+++P W+ S+E Q R
Sbjct: 671 MSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRV 730
Query: 1084 HRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113
HR+G RP+ + + ++E +++E LQ+
Sbjct: 731 HRIGQYRPVKITRFCIEDSIEARIIE-LQE 759
Score = 129 (50.5 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 38/144 (26%), Positives = 72/144 (50%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSA-- 673
+L+V P+ + WK +I+QH + GQL ++++ + + YDVV+TT+ L +
Sbjct: 233 SLVVAPTVALMQWKNEIEQHTK-GQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESVF 291
Query: 674 ---EWG-RRK----KSPMM--QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLL 723
+G RRK K P + + + RV+LDE H + +N + +L RW L
Sbjct: 292 RKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKD--RQSNTARAVNNLKTQKRWCL 349
Query: 724 TGXXXXXXXXSQLSHLQPMLKFLH 747
+G +++ + +++FL+
Sbjct: 350 SGTPLQ----NRIGEMYSLIRFLN 369
Score = 61 (26.5 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 224 FHGGMFCDEPGLGKTITALSLIL 246
+ GG+ DE G+GKTI ++L++
Sbjct: 203 YAGGVLADEMGMGKTIQTIALLM 225
Score = 44 (20.5 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
M +KL P Q + W++ +E
Sbjct: 180 MTIKLLPFQLEGLHWLISQE 199
Score = 37 (18.1 bits), Expect = 3.1e-09, Sum P(4) = 3.1e-09
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 812 HAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRN 856
H + +++ NI N V +L K+W T ++N
Sbjct: 312 HNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQN 356
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 154 (59.3 bits), Expect = 2.5e-18, Sum P(4) = 2.5e-18
Identities = 56/228 (24%), Positives = 104/228 (45%)
Query: 610 LYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN 669
++ S TLIV P+ L+ HWK ++++ V +L ++++ + + YD+VITT++
Sbjct: 614 VFTSSGTLIVCPASLIHHWKNEVEKRVTSNRLRIYLYHGPNRSRHAKVLSTYDIVITTYS 673
Query: 670 RLSAEWGRRKK---------------SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI- 713
L+ E K+ +P++QV W R++LDE H + + T+ +A+
Sbjct: 674 LLAKEIPTTKQEGEVPGANLSVEGTSAPLLQVVWARIILDEAHNVKNPRVQTS---IAVC 730
Query: 714 SLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAW----DGGILRPFEAE 769
L A RW +TG + L + ++KFL + + W D G ++ E
Sbjct: 731 KLQAQARWAVTGTPIQ----NNLLDMYSLMKFLRCSPFDEFS-LWKSQVDNGSMKGGERL 785
Query: 770 MEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYN 817
+S LL+ + S K L +P ++ L +E+ Y+
Sbjct: 786 SILTKSLLLRRTKDQLDSTGKP-LVALPARRCQLHRLKLSEDERAVYD 832
Score = 133 (51.9 bits), Expect = 2.5e-18, Sum P(4) = 2.5e-18
Identities = 39/150 (26%), Positives = 76/150 (50%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K +I SQ+ + V+ L + +A + ++ ++ ++ F H +L+ A
Sbjct: 987 KSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLA 1046
Query: 1053 S-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
+GL+L+ +FL++ W+ S+E+Q R +R+G + + + GTVEE++L+ L
Sbjct: 1047 GGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQ-L 1105
Query: 1112 QDTDRCRRLLKEELVKPEREGARSHRTLHD 1141
Q+ + + L K+ L EG + TL D
Sbjct: 1106 QE--KKKDLAKQVL--SGSEGPVTKLTLAD 1131
Score = 75 (31.5 bits), Expect = 2.5e-18, Sum P(4) = 2.5e-18
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 226 GGMFCDEPGLGKTITALSLIL--KTQGTLADPPDGVKIIWCTHNGDPRCGYYDLSGDKLT 283
GG+ D+ GLGKT+T ++LIL K Q + + W + N + SG +
Sbjct: 567 GGILADDMGLGKTLTMIALILTKKNQQKSKEKERSEPVTWLSKNDS---SVFTSSGTLIV 623
Query: 284 C 284
C
Sbjct: 624 C 624
Score = 52 (23.4 bits), Expect = 2.5e-18, Sum P(4) = 2.5e-18
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 113 PEDNS-CSTGXXXXXXXXXXXXLTRLGPIDLVRIAATCRHLRCLAASIMPC-MKLKLFPH 170
PE S CS G +T +L R +C +A P +K+ L H
Sbjct: 492 PEGASQCSGGHMNQHHLYNVWKITSEAIDELHRSLKSCPGETAVAED--PAGLKVPLLLH 549
Query: 171 QQAAVEWMLHRE 182
Q+ A+ W+L RE
Sbjct: 550 QKQALAWLLWRE 561
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 184 (69.8 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 41/126 (32%), Positives = 71/126 (56%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGS 1051
+K+IIFSQF + ++E + G ++ M +++ ++ F D SC +L+
Sbjct: 1021 EKIIIFSQFTSLLDLLEIPIAREGHRYRRYDGSMKPADRNSAVLDFTDDPSCKVMLVSLK 1080
Query: 1052 A-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
A + GL+L V + +P W+ +EEQ + RAHR+G R +HV + + TVE++++E
Sbjct: 1081 AGNSGLNLVAANHVIIFDPFWNPYVEEQAVDRAHRIGQLREVHVHRILVPETVEDRIIE- 1139
Query: 1111 LQDTDR 1116
LQD R
Sbjct: 1140 LQDKKR 1145
Score = 105 (42.0 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
+ TLI+ P L+ WK +I++ + PG +L +++ K ++ S YDVV+TTF L+
Sbjct: 522 KTTLIIAPVALMQQWKREIEKMLSPGHRLQVYILHGDKGRTSFSDLKKYDVVLTTFGMLA 581
Query: 673 AEWGR 677
+E R
Sbjct: 582 SELKR 586
Score = 64 (27.6 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 223 DFHGGMFCDEPGLGKTITALSLILKTQGTLADP 255
D GG+ D+ GLGKTI A++L++ + DP
Sbjct: 489 DQKGGILADDMGLGKTIQAIALMVSRPSS--DP 519
Score = 62 (26.9 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 54/257 (21%), Positives = 98/257 (38%)
Query: 688 WLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLH 747
W RV++DE + + T L + RW ++G + + L +LKFL
Sbjct: 620 WYRVIIDEAQCIKN--RATQSAIACCRLNTTYRWCMSGTPMM----NNVEELHSLLKFLR 673
Query: 748 EEAYGQNQKAWDGGILRPFEAE---MEEGRSRLLQLLHRCMISAR----KTD---LQTIP 797
Y N + P + ++E L++L + ++ R K D + IP
Sbjct: 674 IRPYA-NLDRFKRDFSAPLKTNNKHLQEKAMTQLRILLKAVLLRRTKHSKIDGKPIFDIP 732
Query: 798 LCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNL 857
E F+E+ Y L + +N ++E+ + + + L
Sbjct: 733 PRFSEKVHAVFSEDELELYKALEAKTQ-----LQFN--RYLEAGTVGRNYSNILVLLLRL 785
Query: 858 RLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAF---IKYNLLNGGNCLRHILC 914
R +CC H+ +TD + E + G+D ++ F + L + N L +C
Sbjct: 786 RQACCHP-HL-ITDFSVKLNEASE-----GVDFIANAEQFSNEVVARLRDNEN-LECPVC 837
Query: 915 LDCVAMDSEKCSLPGCG 931
+D A+D+ P CG
Sbjct: 838 ID--AVDNPIIFFP-CG 851
Score = 41 (19.5 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K L HQ+ + WM +E
Sbjct: 467 LKYPLLDHQKLGLAWMRSKE 486
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 174 (66.3 bits), Expect = 8.0e-18, Sum P(4) = 8.0e-18
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAG-----IKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
KVI+FSQF ++ +I+ +L +A KF G + + ++S + D LL
Sbjct: 929 KVIVFSQFSSYLDIIQSELKLASEEFIVFKFDGRLNMNDRTKLLESFNQPLEDGKVAILL 988
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ A +GL+L+ +R ++M+P W S+E+Q I R HR+G + V M ++E +
Sbjct: 989 LSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNETVKVVRFIMENSIETK 1048
Query: 1107 MLEFLQDTDRCRRLLKEELVKPEREGARSHR 1137
ML+ +Q+ R+ E V E E R R
Sbjct: 1049 MLK-IQE----RKKQIGEAVAAEEEERRKRR 1074
Score = 99 (39.9 bits), Expect = 8.0e-18, Sum P(4) = 8.0e-18
Identities = 58/225 (25%), Positives = 89/225 (39%)
Query: 603 EPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQ-----------HVRPGQLHLFVWT---- 647
EP S R Y S+ TLIVVP L+ WK++ ++ H Q W+
Sbjct: 487 EP-KSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLCNP 545
Query: 648 DHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTN 707
D+ K + Y V+ F RLS R K + +V V L N+ N
Sbjct: 546 DNSKIPIVMIT-TYGTVLNEFTRLSKR--RNSKGELPKVGLYSVKFFR-IILDEGHNIRN 601
Query: 708 K----LQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGIL 763
+ + L +S +W+LTG ++L L + KFL + + N W +
Sbjct: 602 RNTKTAKSVYELQSSRKWILTGTPIV----NRLDDLYSLTKFLELDPWN-NFSYWKTFVT 656
Query: 764 RPFEAE-----MEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEV 803
PFE + ++ +S L + R S +K + L KEV
Sbjct: 657 LPFEQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVELPAKEV 701
Score = 90 (36.7 bits), Expect = 8.0e-18, Sum P(4) = 8.0e-18
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 203 YFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
YFY N +G+++ GG+ DE GLGKTI L+L+
Sbjct: 435 YFYANMYNGELSLEKPVIKSSLRGGILADEMGLGKTIATLALV 477
Score = 44 (20.5 bits), Expect = 8.0e-18, Sum P(4) = 8.0e-18
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 165 LKLFPHQQAAVEWMLHREWNAEVL 188
L L +Q+ + WML RE +VL
Sbjct: 362 LDLRSYQKHGLSWMLAREKELDVL 385
Score = 41 (19.5 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 496 TSDGKKQNVSFFISVLKEHYLLINSMTKKALTWLAKLS-PDELS-----EMETTGLASPI 549
T+ K+N + + ++H L +K L L LS D+LS E+E G +P+
Sbjct: 352 TTTPPKENFALDLRSYQKHGLSWMLAREKELDVLEMLSNEDKLSSQSRKELENLGTMNPL 411
Query: 550 LGSY 553
Y
Sbjct: 412 WRKY 415
Score = 39 (18.8 bits), Expect = 0.00037, Sum P(4) = 0.00037
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 1021 MYSPMHSSNKIKSLDMFRH 1039
+Y P SS+KI++L RH
Sbjct: 901 LYDPNRSSSKIQAL--VRH 917
Score = 37 (18.1 bits), Expect = 0.00058, Sum P(4) = 0.00058
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 1093 HVETLAMRGTVEEQMLEFLQDTDRCRRL--LKEELVK 1127
HV+ + ++++++E QD D + L +KE ++
Sbjct: 756 HVDLIGGAHEMDDEIIEAEQDEDMRKFLTSIKENQIR 792
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 132 (51.5 bits), Expect = 1.2e-17, Sum P(5) = 1.2e-17
Identities = 27/124 (21%), Positives = 70/124 (56%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD-ASCLALLMDG 1050
+KV+I SQ+ ++++E+ + G + + + ++ + +D F + +L+
Sbjct: 840 EKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEKGGAQVMLLSL 899
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+A +GL+L + +++ W+ ++E+Q R +RMG + + + L ++GT+E+++++
Sbjct: 900 TAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRLIVKGTIEQRVMD 959
Query: 1110 FLQD 1113
LQ+
Sbjct: 960 -LQE 962
Score = 103 (41.3 bits), Expect = 1.2e-17, Sum P(5) = 1.2e-17
Identities = 33/117 (28%), Positives = 59/117 (50%)
Query: 678 RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLS 737
+ SP+ +V W RV+LDE H + + L+ +K L++ +RW L+G + L
Sbjct: 540 KNDSPLARVAWSRVILDEAHAIKNRLSQCSKA--VCRLSSFSRWCLSGTPIH----NNLW 593
Query: 738 HLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQ 794
L +++FL +G ++K W I+ P M+ G + + LL + ++ R D Q
Sbjct: 594 DLYSLVRFLRIPLFG-DRKFWAESIM-P----MKTGMADRVNLLTKNLMLRRTKDQQ 644
Score = 95 (38.5 bits), Expect = 1.2e-17, Sum P(5) = 1.2e-17
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 610 LYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP---SAHSLAWDYDVVIT 666
LY S TLI+ P+ L+ W+ +I + + L +F++ KK LA YDVVIT
Sbjct: 443 LYPSNGTLIIAPASLIHQWEAEINRRLESDLLSVFMFHGTKKQRQIEPKELA-RYDVVIT 501
Query: 667 TFNRLSAEWGRRK 679
T+ + E +K
Sbjct: 502 TYTLAANELMEKK 514
Score = 64 (27.6 bits), Expect = 1.2e-17, Sum P(5) = 1.2e-17
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ D+ GLGKT++ LSLI+
Sbjct: 393 GGILADDMGLGKTLSMLSLIV 413
Score = 54 (24.1 bits), Expect = 1.2e-17, Sum P(5) = 1.2e-17
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 165 LKLFPHQQAAVEWMLHRE 182
++L PHQ+A + W++ RE
Sbjct: 370 VELMPHQKAGLRWLVWRE 387
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 179 (68.1 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 55/208 (26%), Positives = 101/208 (48%)
Query: 910 RHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWS 969
+H C C + P C + + S + L +PE + ++ I + W+
Sbjct: 753 KHEFCRACASSYVNSTPQPTCPRCHIVLSID-LEQPEIEQDQEMTKKNSIINRIRMENWT 811
Query: 970 NTNTF--LKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHS 1027
++ L L + L S+ + K IIFSQF + +IE +L AGI + M
Sbjct: 812 SSTKMEMLVHSLQK--LRSDNS-SHKSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTP 868
Query: 1028 SNKIKSLDMFRH--DASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR 1085
+ + S+D F + D C + + + + L+L+ +RVF+++P W+ + E Q R HR
Sbjct: 869 AQRAASIDHFMNNVDVECFLVSLK-AGGVALNLTEASRVFIVDPWWNPAAEWQSADRVHR 927
Query: 1086 MGATRPIHVETLAMRGTVEEQMLEFLQD 1113
+G TRP+ + L + ++E +++E LQ+
Sbjct: 928 IGQTRPVVITRLCIEDSIESRIVE-LQE 954
Score = 109 (43.4 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 35/128 (27%), Positives = 62/128 (48%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVW----TDHKKPSAHSLAWDYDVVITTFN 669
+ +L++ P + W ++IQ + G L V+ KK + L YDV+I ++N
Sbjct: 431 KPSLVLAPPVALMQWMSEIQSYTE-GTLKTIVYHGSNAKTKKMTKAELK-GYDVIIMSYN 488
Query: 670 RLSAEWGR------------RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTA 717
L + + + ++KS + + + RV+LDE H + S +T+K +A+ T
Sbjct: 489 SLQSMYAKQEKGVSKKDGIYKEKSLLHSIDFHRVILDEAHYIKSRTTMTSKACLALKTTY 548
Query: 718 SNRWLLTG 725
RW LTG
Sbjct: 549 --RWCLTG 554
Score = 69 (29.3 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 223 DFHGGMFCDEPGLGKTITALSLIL 246
++ GG+ DE GLGKTI A+SL++
Sbjct: 401 EWKGGLLGDEMGLGKTIQAVSLVM 424
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 172 (65.6 bits), Expect = 4.3e-17, Sum P(6) = 4.3e-17
Identities = 40/125 (32%), Positives = 73/125 (58%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K IIFSQ+ + ++E ++ +GI+F + M + + +++ F +LM A
Sbjct: 894 KTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKA 953
Query: 1053 -SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
+LGL++ V L++ W+ + E+Q I RAHR+G TRP+ V + ++ TVE+++L+ L
Sbjct: 954 GNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILK-L 1012
Query: 1112 QDTDR 1116
Q+ R
Sbjct: 1013 QEEKR 1017
Score = 84 (34.6 bits), Expect = 4.3e-17, Sum P(6) = 4.3e-17
Identities = 28/112 (25%), Positives = 47/112 (41%)
Query: 682 PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQP 741
P+ +V W R++LDE T+ + T + +L A RW L+G + + L
Sbjct: 536 PLGKVGWFRIVLDEAQTIKNYR--TQMARSCCTLRAKRRWCLSGTPIQ----NTIDDLYS 589
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL 793
+FL + Y K++ I P +G +L +L M+ K L
Sbjct: 590 YFRFLRYDPYAV-YKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTL 640
Score = 72 (30.4 bits), Expect = 4.3e-17, Sum P(6) = 4.3e-17
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 616 TLIVVPSYLVDHWKTQIQQHV-RPGQLHLFVWT-DHKKPSAHSLAWDYDVVITTF 668
TLIV P+ +V W ++ + V +L + V+ ++ + LA +YDVV+TT+
Sbjct: 416 TLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELA-EYDVVVTTY 469
Score = 70 (29.7 bits), Expect = 4.3e-17, Sum P(6) = 4.3e-17
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 226 GGMFCDEPGLGKTITALSLILK 247
GG+ D+ GLGKT++ ++LILK
Sbjct: 304 GGILADDQGLGKTVSTIALILK 325
Score = 46 (21.3 bits), Expect = 9.3e-15, Sum P(6) = 9.3e-15
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVS 210
+ + L HQ+ A+ WM +E ++ P I LA + G V+T++
Sbjct: 277 LSVPLMRHQKIALAWMFQKETSS--FNCPGGI-LADDQGLGKTVSTIA 321
Score = 45 (20.9 bits), Expect = 4.3e-17, Sum P(6) = 4.3e-17
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 911 HILCLDCVAM----DSEKCSLPGC 930
HI C +CV D C +P C
Sbjct: 768 HIFCYECVLEYITGDENTCPVPRC 791
Score = 42 (19.8 bits), Expect = 1.6e-14, Sum P(5) = 1.6e-14
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 446 KLLDASVADATAAWFC--SMNSDPTHQSCGDPEEAWDNCQSITY 487
++L S+ T+A + +SDP H+ G + DN + + Y
Sbjct: 213 RILPPSLTHGTSASVLHHAGSSDPMHRFGGGEDRNPDNDERLVY 256
Score = 42 (19.8 bits), Expect = 5.7e-10, Sum P(3) = 5.7e-10
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 254 DPPDGVKIIWCTHNGDPRCGYYDLSGDKLTC 284
+PP+ + C H C ++GD+ TC
Sbjct: 756 EPPEKPVVTLCGHIFCYECVLEYITGDENTC 786
Score = 41 (19.5 bits), Expect = 0.00045, Sum P(6) = 0.00045
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 1061 VTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
VTR+ + + + DR ++ Q R A H + A R TV++ L++L
Sbjct: 996 VTRITIKDTVEDRILKLQEEKRTMVASAFGEEHGGSSATRLTVDD--LKYL 1044
Score = 38 (18.4 bits), Expect = 4.3e-17, Sum P(6) = 4.3e-17
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 316 CPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYD 375
C A ++D DE + S + L SS T ++ N ++ D
Sbjct: 338 CKQETEALVLDADDESDNAKHESGSHVKPELKVSSNSETSVLSACGNDENDSSDMEKAED 397
Query: 376 EESN 379
EE+N
Sbjct: 398 EEAN 401
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 162 (62.1 bits), Expect = 4.8e-17, Sum P(4) = 4.8e-17
Identities = 59/240 (24%), Positives = 109/240 (45%)
Query: 611 YLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670
+ S TLI+ P+ L+ HWK ++Q+ V +L ++++ + + YD+VITT++
Sbjct: 623 FTSHRTLIICPASLIHHWKNEVQKRVCNNELRVYLYHGPNRDQNAKVLSMYDIVITTYSL 682
Query: 671 LSAEWGRRKK---------------SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-S 714
L+ E +++ SP++++ W R++LDE HT+ + T+ MA+
Sbjct: 683 LAKEIPTKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTS---MAVCK 739
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR 774
L A RW +TG + L + +LKFL + + W + + ++G
Sbjct: 740 LQAQARWAVTGTPIQ----NNLLDMYSLLKFLRCSPFDEFS-LWKSQV----DNGSKKGG 790
Query: 775 SRLLQLLHRCMISARKTDLQTI--PLC-IKEVTF----LNFTEEHAGTYNELVVTVRRNI 827
RL L ++ K L + PL + + F L +E+ YN L R ++
Sbjct: 791 ERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVLFARSRSDL 850
Score = 133 (51.9 bits), Expect = 4.8e-17, Sum P(4) = 4.8e-17
Identities = 41/167 (24%), Positives = 84/167 (50%)
Query: 959 IELQPSYRQWSNTNTFLKQ-DLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIK 1017
+EL S RQ + ++ L + + R N S K+ +I SQ+ + V+ L +
Sbjct: 966 VELFDSMRQSTKISSLLAELEAIRRNSGSQKS-----VIVSQWTSMLEVVALHLKRHRVT 1020
Query: 1018 FAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSME 1076
+A + ++ ++ ++ F +L+ A +GL+L+ +FL++ W+ S+E
Sbjct: 1021 YATIDGSVNPKQRMDLVEAFNSSGGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLE 1080
Query: 1077 EQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDT--DRCRRLL 1121
+Q R +R+G + + + GTVEE++L+ LQ+ D +++L
Sbjct: 1081 DQASDRIYRVGQQKDVVIHRFVCEGTVEEKILQ-LQEKKKDLAKQIL 1126
Score = 56 (24.8 bits), Expect = 4.8e-17, Sum P(4) = 4.8e-17
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 226 GGMF--CDEPGLGKTITALSLILKTQ 249
GG+ D+ GLGKT+T ++LIL TQ
Sbjct: 573 GGILFPADDMGLGKTLTMIALIL-TQ 597
Score = 50 (22.7 bits), Expect = 4.8e-17, Sum P(4) = 4.8e-17
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L HQ+ A+ W+L RE
Sbjct: 548 LKVPLLLHQKQALAWLLWRE 567
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 162 (62.1 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 59/240 (24%), Positives = 109/240 (45%)
Query: 611 YLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670
+ S TLI+ P+ L+ HWK ++Q+ V +L ++++ + + YD+VITT++
Sbjct: 645 FTSHRTLIICPASLIHHWKNEVQKRVCNNELRVYLYHGPNRDQNAKVLSMYDIVITTYSL 704
Query: 671 LSAEWGRRKK---------------SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-S 714
L+ E +++ SP++++ W R++LDE HT+ + T+ MA+
Sbjct: 705 LAKEIPTKEQEGAVPGAELSVQGTASPLLRIVWARIILDEAHTVKNPRVQTS---MAVCK 761
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR 774
L A RW +TG + L + +LKFL + + W + + ++G
Sbjct: 762 LQAQARWAVTGTPIQ----NNLLDMYSLLKFLRCSPFDEFS-LWKSQV----DNGSKKGG 812
Query: 775 SRLLQLLHRCMISARKTDLQTI--PLC-IKEVTF----LNFTEEHAGTYNELVVTVRRNI 827
RL L ++ K L + PL + + F L +E+ YN L R ++
Sbjct: 813 ERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQFQLHRLKLSEDEETVYNVLFARSRSDL 872
Score = 133 (51.9 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 41/167 (24%), Positives = 84/167 (50%)
Query: 959 IELQPSYRQWSNTNTFLKQ-DLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIK 1017
+EL S RQ + ++ L + + R N S K+ +I SQ+ + V+ L +
Sbjct: 988 VELFDSMRQSTKISSLLAELEAIRRNSGSQKS-----VIVSQWTSMLEVVALHLKRHRVT 1042
Query: 1018 FAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSME 1076
+A + ++ ++ ++ F +L+ A +GL+L+ +FL++ W+ S+E
Sbjct: 1043 YATIDGSVNPKQRMDLVEAFNSSGGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLE 1102
Query: 1077 EQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDT--DRCRRLL 1121
+Q R +R+G + + + GTVEE++L+ LQ+ D +++L
Sbjct: 1103 DQASDRIYRVGQQKDVVIHRFVCEGTVEEKILQ-LQEKKKDLAKQIL 1148
Score = 56 (24.8 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 226 GGMF--CDEPGLGKTITALSLILKTQ 249
GG+ D+ GLGKT+T ++LIL TQ
Sbjct: 595 GGILFPADDMGLGKTLTMIALIL-TQ 619
Score = 50 (22.7 bits), Expect = 5.3e-17, Sum P(4) = 5.3e-17
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L HQ+ A+ W+L RE
Sbjct: 570 LKVPLLLHQKQALAWLLWRE 589
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 164 (62.8 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 45/126 (35%), Positives = 67/126 (53%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGI---KFAGMYSPMHSSNKIKSLDMFRHDASCLALLM 1048
DK +IFSQ+ + +IE L I K G Y M S N I L F D LL+
Sbjct: 1495 DKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLG-YMSMISRNNI--LYNFNQDKQLRVLLI 1551
Query: 1049 DGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
A GL+L R+F+++P W+ + E Q I RAHR+G T+ ++ + TVEE++
Sbjct: 1552 SLKAGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKI 1611
Query: 1108 LEFLQD 1113
++ LQ+
Sbjct: 1612 IQ-LQN 1616
Score = 92 (37.4 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 661 YDVVITTFNRLSAEWGRRK------KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714
YD +I +++S E +R+ +S + Q++W R++LDE H + + N T+ Q ++
Sbjct: 1002 YDSIIVRKSKMSKEKKKRENMKIFDESALHQIYWNRIILDEAHRI-KNRN-TSTTQSILN 1059
Query: 715 LTASN-RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAY 751
L RW LTG +++S L +++F+ Y
Sbjct: 1060 LKCCGYRWCLTGTPLQ----NRISELYSLIRFIEFYPY 1093
Score = 81 (33.6 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTF 668
L TLI+ P V WK++I++ V L+++V+ + K + YD+VIT++
Sbjct: 439 LKGQTLIIAPVAAVMQWKSEIEKFVDENILNVYVYHGNSKIISDEELIKYDIVITSY 495
Score = 71 (30.1 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 221 MRDFHGGMFCDEPGLGKTITALSLIL 246
M + GG+ DE G+GKTI A++LIL
Sbjct: 242 MSNVKGGILADEMGMGKTIQAITLIL 267
Score = 47 (21.6 bits), Expect = 2.3e-13, Sum P(5) = 2.3e-13
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 375 DEESNI-CNDRNAKGNSTAKKRANSSRQVPKRN---QVGLSYVV--SNSCERPEKVST 426
+++ NI ++++ N+T K + + Q+ +RN + +V S+SC+ EK S+
Sbjct: 587 EKKKNIEISNKSLNHNNTKKNKGKKNNQIKQRNAQKDSNIDVIVLSSDSCK--EKSSS 642
Score = 42 (19.8 bits), Expect = 4.3e-08, Sum P(4) = 4.3e-08
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 369 NLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSN 416
N T++ ++ I + K + +K++ S V +N+ G ++SN
Sbjct: 1367 NKLETHENDNLITSKDLLKNKKSLEKKSKSISVVKFKNKDGYINLLSN 1414
Score = 41 (19.5 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K L +Q+ + WM+++E
Sbjct: 222 LKYDLLQYQKEGIYWMINQE 241
Score = 37 (18.1 bits), Expect = 2.6e-11, Sum P(5) = 2.6e-11
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 816 YNELVVTVRRNILM-ADWNDP-SHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKV 869
+N ++ + N L D ND HV L+ K + +TTI+N L G +KV
Sbjct: 712 WNVVIKNMLENFLYNVDMNDKCKHV--LI--KIY-VTNTTIQNTELEKLNMGELKV 762
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 164 (62.8 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 45/126 (35%), Positives = 67/126 (53%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGI---KFAGMYSPMHSSNKIKSLDMFRHDASCLALLM 1048
DK +IFSQ+ + +IE L I K G Y M S N I L F D LL+
Sbjct: 1495 DKCLIFSQYCSMLDLIEYHLKKHNIVCSKLLG-YMSMISRNNI--LYNFNQDKQLRVLLI 1551
Query: 1049 DGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
A GL+L R+F+++P W+ + E Q I RAHR+G T+ ++ + TVEE++
Sbjct: 1552 SLKAGGEGLNLQVANRIFIVDPWWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKI 1611
Query: 1108 LEFLQD 1113
++ LQ+
Sbjct: 1612 IQ-LQN 1616
Score = 92 (37.4 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 661 YDVVITTFNRLSAEWGRRK------KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714
YD +I +++S E +R+ +S + Q++W R++LDE H + + N T+ Q ++
Sbjct: 1002 YDSIIVRKSKMSKEKKKRENMKIFDESALHQIYWNRIILDEAHRI-KNRN-TSTTQSILN 1059
Query: 715 LTASN-RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAY 751
L RW LTG +++S L +++F+ Y
Sbjct: 1060 LKCCGYRWCLTGTPLQ----NRISELYSLIRFIEFYPY 1093
Score = 81 (33.6 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTF 668
L TLI+ P V WK++I++ V L+++V+ + K + YD+VIT++
Sbjct: 439 LKGQTLIIAPVAAVMQWKSEIEKFVDENILNVYVYHGNSKIISDEELIKYDIVITSY 495
Score = 71 (30.1 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 221 MRDFHGGMFCDEPGLGKTITALSLIL 246
M + GG+ DE G+GKTI A++LIL
Sbjct: 242 MSNVKGGILADEMGMGKTIQAITLIL 267
Score = 47 (21.6 bits), Expect = 2.3e-13, Sum P(5) = 2.3e-13
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 375 DEESNI-CNDRNAKGNSTAKKRANSSRQVPKRN---QVGLSYVV--SNSCERPEKVST 426
+++ NI ++++ N+T K + + Q+ +RN + +V S+SC+ EK S+
Sbjct: 587 EKKKNIEISNKSLNHNNTKKNKGKKNNQIKQRNAQKDSNIDVIVLSSDSCK--EKSSS 642
Score = 42 (19.8 bits), Expect = 4.3e-08, Sum P(4) = 4.3e-08
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 369 NLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSN 416
N T++ ++ I + K + +K++ S V +N+ G ++SN
Sbjct: 1367 NKLETHENDNLITSKDLLKNKKSLEKKSKSISVVKFKNKDGYINLLSN 1414
Score = 41 (19.5 bits), Expect = 1.0e-16, Sum P(5) = 1.0e-16
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K L +Q+ + WM+++E
Sbjct: 222 LKYDLLQYQKEGIYWMINQE 241
Score = 37 (18.1 bits), Expect = 2.6e-11, Sum P(5) = 2.6e-11
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 816 YNELVVTVRRNILM-ADWNDP-SHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKV 869
+N ++ + N L D ND HV L+ K + +TTI+N L G +KV
Sbjct: 712 WNVVIKNMLENFLYNVDMNDKCKHV--LI--KIY-VTNTTIQNTELEKLNMGELKV 762
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 174 (66.3 bits), Expect = 1.2e-16, Sum P(6) = 1.2e-16
Identities = 44/129 (34%), Positives = 76/129 (58%)
Query: 992 DKVIIFSQF---LEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLAL-L 1047
+KVI+FSQF + + ++ Q + +++ G S +N IK + ++ + L L L
Sbjct: 945 EKVIVFSQFTSLFDLMALVLQNQHIEFLRYDGTMSMDVKNNVIK--EFYQSSKNVLLLSL 1002
Query: 1048 MDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
G+A GL L+ VF+M+P W+ +EEQ + RAHR+G TR + V + + GTVE ++
Sbjct: 1003 RAGNA--GLTLTCANHVFIMDPFWNPFVEEQAMGRAHRIGQTREVFVHRVLIAGTVENRI 1060
Query: 1108 LEFLQDTDR 1116
+E LQ++ +
Sbjct: 1061 ME-LQESKK 1068
Score = 74 (31.1 bits), Expect = 1.2e-16, Sum P(6) = 1.2e-16
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPG---QLHLFVWTDHKKPSAHSLAWDYDVVITTFNRL 671
+ LIV P L+ W +I+ + + ++ D KK L +YD+V+ ++ L
Sbjct: 471 SNLIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDKKKMKDFDLMKEYDIVLVSYTTL 530
Query: 672 SAEW 675
EW
Sbjct: 531 VQEW 534
Score = 73 (30.8 bits), Expect = 1.2e-16, Sum P(6) = 1.2e-16
Identities = 36/136 (26%), Positives = 57/136 (41%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLK 744
Q H R++LDE + + L +K L A R+ LTG + + L P+L+
Sbjct: 572 QFH--RIILDEAQAIKNKQALASKAMTY--LRAQYRFCLTGTPMQ----NGIEELYPLLR 623
Query: 745 FLHEEAYGQNQKAWDGGILRPF--------EAEMEEGRSRLLQLLHRCMISARKTDLQTI 796
FL + Y +K + IL P E +++E ++ LL ++ K L
Sbjct: 624 FLKIQPYCSEEK-FRADILTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTKDSL--- 679
Query: 797 PLCIKEVTFLNFTEEH 812
I V LN E+H
Sbjct: 680 ---IDGVPILNLPEKH 692
Score = 67 (28.6 bits), Expect = 1.2e-16, Sum P(6) = 1.2e-16
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGT 251
GG+ D+ GLGKTI L+L++ ++G+
Sbjct: 446 GGILADDMGLGKTIQTLALMMVSKGS 471
Score = 45 (20.9 bits), Expect = 1.2e-16, Sum P(6) = 1.2e-16
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 161 PCMKLKLFPHQQAAVEWMLHRE 182
P +K+ L HQ+ + WM E
Sbjct: 419 PELKVNLLKHQRMGLTWMKRME 440
Score = 45 (20.9 bits), Expect = 1.2e-16, Sum P(6) = 1.2e-16
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 898 IKYNLLNGGNCLRHILCLDCVAMDSEKCS 926
I+ +LL G C HI+C C E C+
Sbjct: 820 IESSLLIFGEC-GHIICKGCCNTFFENCN 847
Score = 42 (19.8 bits), Expect = 1.0e-13, Sum P(5) = 1.0e-13
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 343 ISPLVASSEPATHLV-RCTRNLGQVKKNLFHTYDEESNICNDR 384
I +++S++ ++ + RN+G + + F+ Y E+ I DR
Sbjct: 347 IETMISSTKRELEVIYQRVRNVGHLANSAFNPY--EAQIVADR 387
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 139 (54.0 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 36/142 (25%), Positives = 69/142 (48%)
Query: 978 DLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLT----VAGIKFAGMYSPMHSSNKIKS 1033
D+ +++ +K +I SQ+ + +IE+ L V + K K+
Sbjct: 1462 DIQNDLIDNEDNADEKCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQKDKA 1521
Query: 1034 LDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092
+ D +L+ S +GL+L+ RV++++P W+ + E Q R HR+G TR +
Sbjct: 1522 IKQLNEDDDVRVMLVSLKSGGVGLNLTRANRVYMVDPWWNEASEVQAEGRVHRIGQTREV 1581
Query: 1093 HVETLAMRGTVEEQMLEFLQDT 1114
V+ M ++E ++LE LQ++
Sbjct: 1582 FVKRYIMNNSIEIRILE-LQES 1602
Score = 117 (46.2 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 42/177 (23%), Positives = 75/177 (42%)
Query: 645 VWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN 704
V T H ++ D+ N + G ++ +HW RV++DE
Sbjct: 1099 VITTHNTFGIEFKKYEEDMQSAYTNNANGNDGSIPLPALLTIHWWRVIIDESQVCKIKTL 1158
Query: 705 LTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILR 764
+ LQ +L A ++W L+G + L + P L FL+ Q+ K W I R
Sbjct: 1159 IFKGLQ---NLDAIHKWCLSGTPIS----NYLDDIYPSLHFLNCYPIAQDLKTWRKLIDR 1211
Query: 765 PFEAEMEEGRSRLLQLLHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNEL 819
P E+ L ++++ ++ K+++ +P KE+ +L+F E A Y+ L
Sbjct: 1212 PKNLEL------LKKVINPILLRREKSEILDFKLPKKNKEIVYLDFNENEADDYDTL 1262
Score = 99 (39.9 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 163 MKLKLFPHQQAAVEWMLHRE------WNAEVLRH-PLYID---LATEDGFYFYVNTVSGD 212
+K +L HQ+ + WML RE +N V + LY + FY N +
Sbjct: 910 LKSQLKHHQKEGLWWMLGREQKPFITYNMSVEEYWRLYKTSPIVGEAASVEFYYNCICDK 969
Query: 213 IATGTAPTMRDFHGGMFCDEPGLGKTITALSLIL 246
I+ + GG+ CDE GLGKT+ +++LI+
Sbjct: 970 ISLTPPKSKHKIAGGLLCDEMGLGKTVMSIALIM 1003
Score = 94 (38.1 bits), Expect = 4.7e-14, Sum P(3) = 4.7e-14
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRP---GQLHLFVW---TDHKKPSAHSLAWDYDVVITT 667
+ATLI+ P LV WK++I++H++P +L +F + KK S L D+VITT
Sbjct: 1044 KATLIICPPSLVSQWKSEIKKHLKPDYFNKLEIFEYHGANRKKKLSGVDLNL-MDIVITT 1102
Query: 668 FNRLSAEW 675
N E+
Sbjct: 1103 HNTFGIEF 1110
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 18/92 (19%), Positives = 39/92 (42%)
Query: 951 KWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQ 1010
+W DLIE W +++ D + + +KA+ Q E V +
Sbjct: 1483 QWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQKDKAI-------KQLNEDDDV---R 1532
Query: 1011 LTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS 1042
+ + +K G+ + +N++ +D + ++AS
Sbjct: 1533 VMLVSLKSGGVGLNLTRANRVYMVDPWWNEAS 1564
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 124 (48.7 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ +GL+L+ + VF+M+P W ++E Q I R HRMG R ++V ++ ++EE+ML
Sbjct: 1108 AGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQLRDVNVVRFIVKDSIEERML 1165
Score = 110 (43.8 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 57/271 (21%), Positives = 117/271 (43%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-------SAHSLAWDYDVVITTF 668
TL+V P L+ W+ + + R G + + ++ ++K SA + A ++++T++
Sbjct: 561 TLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAP-NMILTSY 619
Query: 669 NRLSAEWGRRKK-SP--------MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASN 719
+ +E + +P + V + RV+LDE H + + + T + L A++
Sbjct: 620 GVVMSEHRTHQALAPGTSWTPGNLFSVDFFRVILDEAHIIKNRRSKTARA--CYDLKATH 677
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQ 779
RW+LTG ++L L +++FL E + N W I PFE++ ++Q
Sbjct: 678 RWVLTGTPIV----NRLEDLFSLVRFLRVEPWN-NFSFWKTFITAPFESKEVVRAISVVQ 732
Query: 780 LLHRCMISARKTDLQT------IPLCIKEVTF--LNFTEEHAGTYNELVVTVRRNILMAD 831
+ ++ R ++T +PL + + + E+ YN + ++
Sbjct: 733 TVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQT----- 787
Query: 832 WNDPSHVESLLNPKQWKFRSTTIRNLRLSCC 862
+N +LL K + + LR +CC
Sbjct: 788 FNSNVAAGTLL--KSYSTIFAQLLRLRQTCC 816
Score = 93 (37.8 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 195 DLATEDGF-YFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
DL +G +FYVN SG+++ + GG+ DE GLGKTI LSL+
Sbjct: 480 DLPIIEGINHFYVNPYSGELSLDFPAQEQHCLGGILADEMGLGKTIEMLSLV 531
Score = 68 (29.0 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF 1037
K ++FSQF + +I QLT AGI F + M + + L F
Sbjct: 1016 KSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEVLAQF 1060
Score = 48 (22.0 bits), Expect = 1.5e-10, Sum P(6) = 1.5e-10
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 936 MQSPEILTRPENPNPKWPVPQDLIELQPSYRQ-WSNTNTFLKQDLYRPNLESNKALPDKV 994
M++PE P P PK + + +EL R+ +++ T KQ + N+ + L
Sbjct: 746 MKTPE--GEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQT-FNSNVAAGTLLKSYS 802
Query: 995 IIFSQFL 1001
IF+Q L
Sbjct: 803 TIFAQLL 809
Score = 44 (20.5 bits), Expect = 2.9e-16, Sum P(5) = 2.9e-16
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 165 LKLFPHQQAAVEWMLHREWNA----EVLRHPLY 193
+ L +Q+ A+ WML +E + EV HPL+
Sbjct: 434 MDLRKYQKQALYWMLSKEKDKKSGREVSIHPLW 466
Score = 44 (20.5 bits), Expect = 1.5e-10, Sum P(6) = 1.5e-10
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 493 AKGTS--DGKKQNVSFFISVLKEHYLLINSMTKKA 525
A GTS G +V FF +L E +++ N +K A
Sbjct: 633 APGTSWTPGNLFSVDFFRVILDEAHIIKNRRSKTA 667
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 195 (73.7 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 53/172 (30%), Positives = 95/172 (55%)
Query: 966 RQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSP- 1024
+ W+ T+T +++ L K DK++IFSQF+ + + GIK+ MY+
Sbjct: 859 KHWT-TSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYL-MYTGG 916
Query: 1025 MHSSNKIKSLDMFRHDASCLALLMDGSA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRA 1083
+ ++ + ++L F D + LL+ A ++GL+L+ V +++P W+ +EEQ + RA
Sbjct: 917 LSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRA 976
Query: 1084 HRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEEL-VKPEREGAR 1134
HR+G +P+++ + T+EE++L LQD R R L+ L K RE +R
Sbjct: 977 HRIGQDKPVNILRIVTNNTIEERVLA-LQD--RKRELIDSALGEKGLREISR 1025
Score = 86 (35.3 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLA---WDYDVVITTFNR 670
+ TLI+ P L+ W +I + P V+ H H +A YD+V+TT+N
Sbjct: 441 KTTLIITPVSLLQQWHNEILTKIAPSHRPT-VYIHHGSSKKHKIAEQLMSYDIVLTTYNV 499
Query: 671 LSAEW 675
++ E+
Sbjct: 500 IAYEF 504
Score = 83 (34.3 bits), Expect = 7.3e-16, Sum P(3) = 7.3e-16
Identities = 82/371 (22%), Positives = 143/371 (38%)
Query: 630 TQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRK---KS----- 681
T+I RP +++ + K A L YD+V+TT+N ++ E+ + KS
Sbjct: 461 TKIAPSHRP-TVYIHHGSSKKHKIAEQLM-SYDIVLTTYNVIAYEFKNKMAYDKSIEDNA 518
Query: 682 --------PMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
P + W RV+LDE T+ + L + L ++ RW L+G
Sbjct: 519 PIKKFEHLPFFEAEWYRVILDEAQTIKNRNTLAAR--GCCLLESTYRWCLSGTPMQ---- 572
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR--SRLLQLLHRCMISARKT 791
+ + ++KFL + Y + ++ P + + R LL ++ K
Sbjct: 573 NGVEEFYSLIKFLRIKPYS-DWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKN 631
Query: 792 D------LQTIP--LCIKEVTFLNFTEEHAGTYNELV--VTVRRNILMADWNDPSHVESL 841
+ T+P +K T L+ +E YN L ++ + + +H SL
Sbjct: 632 TKIDGKPILTLPPKTAVKSETDLSSSEMEF--YNTLQSGAQIQMRKYLQEGTITTHYGSL 689
Query: 842 LNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYN 901
L + LR +CC I +A D ++ + + E A +
Sbjct: 690 L---------VLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPE-AVNRLK 739
Query: 902 LLNGGNCLRHILCLDCVAMDSEKCSLPGCG-FL------YEMQSPEIL---TRPENPNPK 951
L+ C LC+D VA E + CG FL + + S E + T EN +PK
Sbjct: 740 LIETLQCS---LCMDVVA---ELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPK 793
Query: 952 WPVPQDLIELQ 962
V ++ I+ +
Sbjct: 794 CSVCEEYIDTE 804
Score = 63 (27.2 bits), Expect = 3.6e-16, Sum P(3) = 3.6e-16
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ D+ GLGKT+ AL+L++
Sbjct: 411 GGILADDMGLGKTVQALALLV 431
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 230 (86.0 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 105/447 (23%), Positives = 199/447 (44%)
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
++G + SP+ + WLRV+LDEGH + + N + + + L + RW+LTG
Sbjct: 1 DYGTKGDSPLHSIRWLRVILDEGHAIRNP-N-AQQTKAVLDLESERRWVLTGTPIQ---- 54
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD- 792
+ L L +L FL + + +++ W I RP E G RL L+ + KT
Sbjct: 55 NSLKDLWSLLSFLKLKPF-IDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSK 113
Query: 793 LQTIPLC-IKE----VTFLNFTEEHAGTY----NELVVTVRR----NILMADWNDPSHVE 839
++ P+ + E + + ++E Y NE T+ R ++A + D +
Sbjct: 114 IKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGL- 172
Query: 840 SLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQET----MDVLVENGLDPLSQEY 895
LL +Q + + N S + D E++++ M +++ +G D +E
Sbjct: 173 -LLRLRQICCHTYLLTNAVSSNGPSAFSLGNDTPEELRKKLIRKMKLILSSGSD---EEC 228
Query: 896 AFIKYNLLNG--GNCLRHILCLDCVA--MDSEK--CSLPGCGFLYEMQSPEILTRPENPN 949
A +L +C H+ C C+ + +E+ P C ++ +L P
Sbjct: 229 AICLDSLTVPVITHCA-HVFCKPCICQVIQNEQPHAKCPLCR--NDIHEDNLLECP---- 281
Query: 950 PKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPD-KVIIFSQFLEHIHVIE 1008
P+ + +D + S +W++++ L + K P+ K ++ SQF + +IE
Sbjct: 282 PE-ELARD--SEKKSDMEWTSSSKI--NALMHALTDLRKKNPNIKSLVVSQFTTFLSLIE 336
Query: 1009 QQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMDGSASLGLDLSFVTRVF 1065
L +G F + M +++S+ F++ + + LL + +GL+LS +RVF
Sbjct: 337 IPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVF 396
Query: 1066 LMEPIWDRSMEEQVISRAHRMGATRPI 1092
LM+P W+ + E+Q R HR+G + +
Sbjct: 397 LMDPAWNPAAEDQCFDRCHRLGQKQEV 423
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 138 (53.6 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 36/134 (26%), Positives = 70/134 (52%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K +I SQ+ + ++ L G+ +A + + ++ ++ F S +L+ SA
Sbjct: 999 KSVIVSQWTSMLQIVAWHLKKRGLTYATINGSVRPKQRMDLVEAFNSSRSPQVMLISLSA 1058
Query: 1053 S-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
+GL+L+ +FL++ W+ S+E+Q R +R+G + + V GTVEE++L L
Sbjct: 1059 GGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVVHKFICEGTVEEKILH-L 1117
Query: 1112 QDTDRCRRLLKEEL 1125
Q+ + + L K+ L
Sbjct: 1118 QE--KKKTLAKQVL 1129
Score = 122 (48.0 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 60/242 (24%), Positives = 103/242 (42%)
Query: 606 DSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVI 665
D R + SR TLI+ P+ L+ HWK ++ + V L + ++ + + YD+VI
Sbjct: 618 DDSREFTSRGTLIICPASLIHHWKNEVMKRVSSNTLRVCLYHGPNRDQRAKVLSTYDIVI 677
Query: 666 TTFNRLSAEWGRRKK-------SPMM-----QVHWLRVMLDEGHTLGSSLNLTN-KLQ-- 710
TT+N L+ E +K+ +P M + LR++ L + + N ++Q
Sbjct: 678 TTYNLLAKEIPTQKEEGAIPGANPSMGKDIAKTPLLRIVWAR-IILDEAHCVRNPRVQTS 736
Query: 711 MAI-SLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAE 769
MA+ L A RW +TG + L + +LKFL + Q W + +
Sbjct: 737 MAVCKLQAHARWAVTGTPIQ----NTLLDMYSLLKFLRCSPFDDFQ-LWKSQV----DNG 787
Query: 770 MEEGRSRLLQLLHRCMISARKTDLQTI--PLCIK-----EVTFLNFTEEHAGTYNELVVT 822
++G RL L ++ K L + PL + V L +E+ Y+ L+
Sbjct: 788 SKKGGERLSILTKSLLLRRTKDQLDSTGKPLVMLPQRQFHVHRLKLSEDEENVYSVLLAK 847
Query: 823 VR 824
R
Sbjct: 848 SR 849
Score = 79 (32.9 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 225 HGGMFCDEPGLGKTITALSLIL--KTQGTLADPPDGVKIIWCTHNGDPR 271
HGG+ D+ GLGKT+T ++LIL K + + V + W + + D R
Sbjct: 574 HGGILADDMGLGKTLTMIALILTQKNREKTKEEDKNVALTWLSKD-DSR 621
Score = 50 (22.7 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L HQ+ A+ W+L RE
Sbjct: 550 LKVPLLLHQKQALAWLLWRE 569
Score = 38 (18.4 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 362 NLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQ 407
N G K+NL ++ ++ R G+ K S V K+++
Sbjct: 211 NKGMHKRNLSEVKSKQCHVEELRKPSGSLQVKSNIES-HHVEKKSE 255
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 113 (44.8 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 21/75 (28%), Positives = 45/75 (60%)
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110
+ +GL+L+ ++V+LM+ W+ ++E+Q R HR+G + +++ + TVEE++L+
Sbjct: 1341 AGGVGLNLTVSSKVYLMDLWWNPAIEDQAFERVHRIGQLKEVNIYKFVLEKTVEERILQI 1400
Query: 1111 LQDTD-RCRRLLKEE 1124
Q ++L +E
Sbjct: 1401 HQSKQYTANQILTQE 1415
Score = 94 (38.1 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-SAHSLAWDYDVVITTFNRLSAE 674
TL++ P L+ WK +I++H + G + +++ K S+ L+ Y VV+TT++ L +E
Sbjct: 739 TLVIAPLALIYQWKEEIERHTKEGFVTCYIYYGTSKDISSEELS-GYSVVLTTYSTLVSE 797
Query: 675 W 675
+
Sbjct: 798 Y 798
Score = 93 (37.8 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 203 YFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
YFYVN ++G + + F GG+ DE GLGKTI ++ LI
Sbjct: 657 YFYVNKLTGAFSLTYPQFVPPFRGGILADEMGLGKTIQSIGLI 699
Score = 78 (32.5 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 679 KKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ-MAI-SLTASNRWLLTGXXXXXXXXSQL 736
K+ P+ + W R+++DE H + + N +Q +A+ L W LTG + +
Sbjct: 872 KEYPLYNITWRRIIIDEAHVIKNK----NSIQSVAVWKLRGERNWCLTGTPIQ----NSI 923
Query: 737 SHLQPMLKFLHEEAYG 752
+ P+ +FL + YG
Sbjct: 924 FDIFPLFRFLGIKPYG 939
Score = 59 (25.8 bits), Expect = 1.4e-15, Sum P(5) = 1.4e-15
Identities = 35/161 (21%), Positives = 73/161 (45%)
Query: 863 VAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCV---- 918
+ G K + +D + +++L + Y L++ CL HI+C C
Sbjct: 1138 ILGSTKSKNIDDDYSKELEILKNGNVMQCCICLEDATYPLIS--KCL-HIMCKKCADDYF 1194
Query: 919 ---AMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFL 975
+ +KC P C ++S + T EN K P+ + L +++ +S T L
Sbjct: 1195 HLTQIADKKC--PQCDNYISLKS--LKTLQEN---KSPLDELLKKMKKDNFVYS---TKL 1244
Query: 976 KQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGI 1016
K+ L+ +++++ +++FSQ++ + +IE+ L + I
Sbjct: 1245 KK-LFE-HVQNDMQNELHIVVFSQWIGFLKIIEKLLNLYNI 1283
Score = 38 (18.4 bits), Expect = 8.6e-10, Sum P(6) = 8.6e-10
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 266 HNGDPRCGYYDLSGDKLTCNNMCLGKRTFSQNARRRQLS 304
+N D Y + G + NN + K+ S N ++ S
Sbjct: 162 NNYDISNDYIRIIGRNIPMNNKKVKKKKVSNNKKKNSAS 200
Score = 37 (18.1 bits), Expect = 8.6e-10, Sum P(6) = 8.6e-10
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 419 ERPEKVSTDHFACNET 434
E E++S D C ET
Sbjct: 590 EGKEEISNDTIKCKET 605
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 208 (78.3 bits), Expect = 3.1e-15, Sum P(3) = 3.1e-15
Identities = 123/558 (22%), Positives = 231/558 (41%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
S +TLI+ P+ L+ HWK +I + V G+L ++++ + + +YD+V+TT++ LS
Sbjct: 624 SCSTLIICPASLIHHWKKEIDRRVSFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSLLS 683
Query: 673 AEWGRRKKSPMMQV--H-----------WLRVMLDEGHTLGSSLNLTN-KLQMAIS---L 715
E K+ H LRV L + + N K+Q +I+ L
Sbjct: 684 KEVPTSKEEGEFPAKDHEVGSGSSACSPLLRVAWARV-ILDEAHTIKNPKVQTSIAVCKL 742
Query: 716 TASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRS 775
AS RW +TG + L + +L+FL + + K W + + ++G
Sbjct: 743 RASARWAVTGTPIQ----NNLLDMYSLLRFLRCSPFDE-YKVWKYQV----DNNTKKGGD 793
Query: 776 RLLQLLHRCMISARKTD--------LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNI 827
RL LL R ++ R D L ++P ++ L + E YN L R
Sbjct: 794 RL-SLLTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSAEEQSVYNVLFARSR--- 849
Query: 828 LMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENG 887
S ++S L ++ K S AG +D + + +
Sbjct: 850 --------STLQSYLKRQEQKNESREH---------AGSNPFEKVAQDFGCSQKEFLASS 892
Query: 888 LDPLS-QEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQ-SPEILTRP 945
+ A + LL C H+ L VA+D + G E Q S L+
Sbjct: 893 QSAVQVSSTAHVLSMLLRLRQCCCHLSLLK-VALDQANLANEGLSLSIEEQLSALTLSEL 951
Query: 946 ENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIH 1005
+ P+ K V + + S +T + L + + +K ++ SQ+ +
Sbjct: 952 QTPDSKSTVYLNGTAFNTDLFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLK 1011
Query: 1006 VIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG--SASLGLDLSFVTR 1063
V+ L G+K++ + ++ ++ ++ F ++ +++ + +GL+L+
Sbjct: 1012 VVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLTGGNH 1071
Query: 1064 VFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKE 1123
+FL++ W+ ++E+Q R +R+G + + + GTVEE++L+ LQ R + L ++
Sbjct: 1072 LFLLDMHWNPALEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQ-LQT--RKKGLAQQ 1128
Query: 1124 ELVKPEREGARSHRTLHD 1141
L +G S TL D
Sbjct: 1129 VLAG---KGETSKLTLAD 1143
Score = 78 (32.5 bits), Expect = 3.1e-15, Sum P(3) = 3.1e-15
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKI-IWCTHNGD---PRC 272
GG+ D+ GLGKT+T ++LIL TQ + K+ +W + N P C
Sbjct: 576 GGILADDMGLGKTLTMIALIL-TQKQMKTEKGSKKLEVWLSRNDSTVIPSC 625
Score = 50 (22.7 bits), Expect = 3.1e-15, Sum P(3) = 3.1e-15
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L HQ+ A+ W+L RE
Sbjct: 551 LKVPLLLHQRQALAWLLWRE 570
Score = 37 (18.1 bits), Expect = 9.3e-10, Sum P(3) = 9.3e-10
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 245 ILKTQGTLADPPDGVKIIWCTHNGDPRCGY 274
+LKT G P G C G CG+
Sbjct: 14 LLKT-GVRDGPNKGKSFYVCGAQGPAPCGF 42
Score = 37 (18.1 bits), Expect = 9.3e-10, Sum P(3) = 9.3e-10
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 375 DEESNICNDRNAKGNSTAKKRANSSRQVPKRN 406
D+ C DR + + + +PK N
Sbjct: 275 DKSLKNCGDRETREKECIGGKNGEMKPIPKEN 306
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 208 (78.3 bits), Expect = 3.3e-15, Sum P(3) = 3.3e-15
Identities = 123/558 (22%), Positives = 231/558 (41%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
S +TLI+ P+ L+ HWK +I + V G+L ++++ + + +YD+V+TT++ LS
Sbjct: 641 SCSTLIICPASLIHHWKKEIDRRVSFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSLLS 700
Query: 673 AEWGRRKKSPMMQV--H-----------WLRVMLDEGHTLGSSLNLTN-KLQMAIS---L 715
E K+ H LRV L + + N K+Q +I+ L
Sbjct: 701 KEVPTSKEEGEFPAKDHEVGSGSSACSPLLRVAWARV-ILDEAHTIKNPKVQTSIAVCKL 759
Query: 716 TASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRS 775
AS RW +TG + L + +L+FL + + K W + + ++G
Sbjct: 760 RASARWAVTGTPIQ----NNLLDMYSLLRFLRCSPFDE-YKVWKYQV----DNNTKKGGD 810
Query: 776 RLLQLLHRCMISARKTD--------LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNI 827
RL LL R ++ R D L ++P ++ L + E YN L R
Sbjct: 811 RL-SLLTRSLLLRRTKDQLDSTGKPLVSLPQRSMQLHQLKLSAEEQSVYNVLFARSR--- 866
Query: 828 LMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENG 887
S ++S L ++ K S AG +D + + +
Sbjct: 867 --------STLQSYLKRQEQKNESREH---------AGSNPFEKVAQDFGCSQKEFLASS 909
Query: 888 LDPLS-QEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQ-SPEILTRP 945
+ A + LL C H+ L VA+D + G E Q S L+
Sbjct: 910 QSAVQVSSTAHVLSMLLRLRQCCCHLSLLK-VALDQANLANEGLSLSIEEQLSALTLSEL 968
Query: 946 ENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIH 1005
+ P+ K V + + S +T + L + + +K ++ SQ+ +
Sbjct: 969 QTPDSKSTVYLNGTAFNTDLFEISKESTKVSHLLAELKTIQSCSETEKSVVVSQWTSMLK 1028
Query: 1006 VIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG--SASLGLDLSFVTR 1063
V+ L G+K++ + ++ ++ ++ F ++ +++ + +GL+L+
Sbjct: 1029 VVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNNNPKGPQVMLVSLLAGGVGLNLTGGNH 1088
Query: 1064 VFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKE 1123
+FL++ W+ ++E+Q R +R+G + + + GTVEE++L+ LQ R + L ++
Sbjct: 1089 LFLLDMHWNPALEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQ-LQT--RKKGLAQQ 1145
Query: 1124 ELVKPEREGARSHRTLHD 1141
L +G S TL D
Sbjct: 1146 VLAG---KGETSKLTLAD 1160
Score = 78 (32.5 bits), Expect = 3.3e-15, Sum P(3) = 3.3e-15
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKI-IWCTHNGD---PRC 272
GG+ D+ GLGKT+T ++LIL TQ + K+ +W + N P C
Sbjct: 593 GGILADDMGLGKTLTMIALIL-TQKQMKTEKGSKKLEVWLSRNDSTVIPSC 642
Score = 50 (22.7 bits), Expect = 3.3e-15, Sum P(3) = 3.3e-15
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L HQ+ A+ W+L RE
Sbjct: 568 LKVPLLLHQRQALAWLLWRE 587
Score = 37 (18.1 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 245 ILKTQGTLADPPDGVKIIWCTHNGDPRCGY 274
+LKT G P G C G CG+
Sbjct: 14 LLKT-GVRDGPNKGKSFYVCGAQGPAPCGF 42
Score = 37 (18.1 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 375 DEESNICNDRNAKGNSTAKKRANSSRQVPKRN 406
D+ C DR + + + +PK N
Sbjct: 275 DKSLKNCGDRETREKECIGGKNGEMKPIPKEN 306
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 136 (52.9 bits), Expect = 4.3e-15, Sum P(5) = 4.3e-15
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 1026 HSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR 1085
HS+NK S+ C L+ + +LGL++ + V L++ W+ + E+Q I RAHR
Sbjct: 495 HSTNKDNSIS----GLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHR 550
Query: 1086 MGATRPIHVETLAMRGTVEEQML 1108
+G TR + V +A++ TVEE++L
Sbjct: 551 IGQTRAVTVTRIAIKNTVEERIL 573
Score = 100 (40.3 bits), Expect = 4.3e-15, Sum P(5) = 4.3e-15
Identities = 31/106 (29%), Positives = 46/106 (43%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLK 744
+V WLRV+LDE HT+ + L K SL A RW LTG +++ L +
Sbjct: 210 RVRWLRVVLDEAHTIKNHRTLIAKA--CFSLRAKRRWCLTGTPIK----NKVDDLYSYFR 263
Query: 745 FLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARK 790
FL Y ++ I P + + G +L +L M+ K
Sbjct: 264 FLRYHPYAMCN-SFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTK 308
Score = 69 (29.3 bits), Expect = 4.3e-15, Sum P(5) = 4.3e-15
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ D+ GLGKTI+ +SLIL
Sbjct: 76 GGILADDQGLGKTISTISLIL 96
Score = 65 (27.9 bits), Expect = 4.3e-15, Sum P(5) = 4.3e-15
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWT-DHKKPSAHSLAWDYDVVITTF 668
S TLIV P+ +V W ++++ V +L + V H+ +A YDVV+TT+
Sbjct: 114 SGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAI-YDVVMTTY 170
Score = 53 (23.7 bits), Expect = 1.6e-13, Sum P(5) = 1.6e-13
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVS 210
+ + L HQ+ A+ WM +E + RH L LA + G ++T+S
Sbjct: 49 LTVPLMRHQKIALNWMRKKEKRS---RHCLGGILADDQGLGKTISTIS 93
Score = 53 (23.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 20/76 (26%), Positives = 28/76 (36%)
Query: 209 VSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNG 268
V+G + T M D G L + L L T +DPP + C H
Sbjct: 357 VNGYSHSDTTRKMSD--GVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVF 414
Query: 269 DPRCGYYDLSGDKLTC 284
C +++GD TC
Sbjct: 415 CYECVSVNINGDNNTC 430
Score = 40 (19.1 bits), Expect = 4.3e-15, Sum P(5) = 4.3e-15
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 911 HILCLDCVAM----DSEKCSLPGC 930
H+ C +CV++ D+ C C
Sbjct: 412 HVFCYECVSVNINGDNNTCPALNC 435
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(4) = 1.9e-06
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 674 EWGRRKKSPMMQVHWLRVMLDEG 696
+W R K + H L V++ G
Sbjct: 128 QWAREVKEKVSDEHKLSVLVHHG 150
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 138 (53.6 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 43/128 (33%), Positives = 62/128 (48%)
Query: 603 EPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD-- 660
E L + R Y S TL+V P ++ W ++ V + V T H P+ H + +
Sbjct: 360 EHLSNGR-YPSANTLVVCPMSVMCQWAHEVASKVAQNAIR--VLTFHG-PNRHEIGIEAF 415
Query: 661 --YDVVITTFNRLSAEWGRR-KKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTA 717
YD+VIT++N + E R SP+ V+W RV+LDE H + +S TN L A
Sbjct: 416 RSYDLVITSYNLVVNELKRYGNTSPLFAVYWNRVILDEAHIIRNSK--TNCCNSVCQLRA 473
Query: 718 SNRWLLTG 725
W LTG
Sbjct: 474 HCHWALTG 481
Score = 119 (46.9 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 37/144 (25%), Positives = 71/144 (49%)
Query: 992 DKVIIFSQFLEHIHVIE---QQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLM 1048
DK+I+ SQ++ ++ ++ Q L+ + F G + +I D ++ + LL
Sbjct: 788 DKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTA--KEREIVLRDFNANNEKRVLLLS 845
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ +GL+L+ + +++ W+ +E Q R +R G T+P + + TVE Q +
Sbjct: 846 LTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVE-QRI 904
Query: 1109 EFLQDTDRCRRLLKEELVKPEREG 1132
+ LQD C+ L ++V PE G
Sbjct: 905 KSLQD---CK-LEIAKVVLPEEGG 924
Score = 67 (28.6 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGT 251
GG+ D+ GLGKT++ ++LIL ++ T
Sbjct: 230 GGILADDMGLGKTLSMIALILASEET 255
Score = 51 (23.0 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 161 PCMKL-KLFPHQQAAVEWMLHRE 182
P + L +L HQQ+ ++WM RE
Sbjct: 202 PALLLVRLLKHQQSCLKWMQFRE 224
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 162 (62.1 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 47/126 (37%), Positives = 66/126 (52%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLA-LLMDG 1050
+K+I+FSQ+ + I + L++ GI+F +NK D F++ S + LLM
Sbjct: 1139 EKIIVFSQWQAILIEIARALSLNGIQFRNK-----CTNK--DFDDFKNPLSNVTCLLMPL 1191
Query: 1051 S-ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
S S GL+L T VFL+EPI + E Q I R HR G RP V + GTVEE +L
Sbjct: 1192 SKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHRFIVNGTVEENILS 1251
Query: 1110 FLQDTD 1115
+ D
Sbjct: 1252 LITSAD 1257
Score = 101 (40.6 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 50/217 (23%), Positives = 87/217 (40%)
Query: 678 RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLS 737
R SP++ V+W RV LDE + SS + +M L A NRW +TG +
Sbjct: 432 RPNSPLLMVNWWRVCLDEAQMVESSTSAA--AEMVRMLPAINRWAVTGT---------ID 480
Query: 738 HLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQT-- 795
L P+L+F+ + AW + + F+ + LL+LL + K+ ++
Sbjct: 481 ELPPLLEFVGRPEVCRPPDAWQT-VDKAFQLNYK--CEPLLELLEHSLWRTCKSKVEHEL 537
Query: 796 -IP--------LCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQ 846
IP L + V L + EEH + + + V ++ D S + ++P+
Sbjct: 538 GIPPQTEVVHRLELSNVESLYYREEHLKCHEQFLAAVAKHTRHNA--DNSSCLASISPQL 595
Query: 847 WKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVL 883
+ +R +C V + D D+L
Sbjct: 596 LRIILKPFLRIRQTCSVPVVFNSNVSSTDYLHPQDLL 632
Score = 72 (30.4 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 166 KLFPHQQAAVEWMLHREWNAEVLRHPL-YIDLATEDGF---YFYVNTVSGDIATGTAPTM 221
+L +QQ V WML RE ++ + P +I L DG + + + P +
Sbjct: 174 QLRKYQQRTVSWMLGRE--QQITQVPANFIVLHAIDGITRVFKHKYCLQFYPFEEEIPKI 231
Query: 222 RDFHGGMFCDEPGLGKTITALSLIL 246
GG+ DE GLGKT+ L+++L
Sbjct: 232 SLPPGGILADEMGLGKTVEFLAMLL 256
Score = 45 (20.9 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 436 VQCDACHKWRKLLDASVADAT 456
VQC C +W+ + +++D +
Sbjct: 306 VQCTKCRRWQHEMCMTISDTS 326
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 128 (50.1 bits), Expect = 1.2e-14, Sum P(6) = 1.2e-14
Identities = 45/138 (32%), Positives = 68/138 (49%)
Query: 995 IIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA-S 1053
I+FSQ+ + L A +F YS + S+ I+ F+ D L+ A S
Sbjct: 1189 IVFSQYKGFL----DYLANAFRRFKIGYSSVDESDGIEK---FKKDPGIECFLLHAKAHS 1241
Query: 1054 LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113
GL+L T VFL EP+ + ++E Q I+R HR+G RP V + TVE+ + D
Sbjct: 1242 SGLNLVNATHVFLCEPLINTAIELQAIARVHRIGQHRPTTVWMYLISDTVEKS----IYD 1297
Query: 1114 TDRCRRLLKEELVKPERE 1131
RRL + +++ ERE
Sbjct: 1298 ISVSRRL--DHIIQKERE 1313
Score = 93 (37.8 bits), Expect = 1.2e-14, Sum P(6) = 1.2e-14
Identities = 67/281 (23%), Positives = 118/281 (41%)
Query: 660 DYDVVITTFNRLSAEW---G---RR----------KKSPMMQVHWLRVMLDEGHTLGSSL 703
D DVV+TT+N L+ E G +R +KSP++++ W RV LDE + S +
Sbjct: 371 DNDVVLTTYNVLAREIHYAGVAPKRNLRHEKRFEPRKSPLIKISWWRVCLDEAQMIESGI 430
Query: 704 NLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAY-GQNQKAWDGGI 762
+ N ++A + W +TG ++ L +L FL E + G K
Sbjct: 431 S--NAAKVARLIPRHIAWAVTGTPLR----KDVTDLLGLLLFLRYEPFCGPIWKRLCDAT 484
Query: 763 LRPFEAE------MEEGRSRLLQLLHRCMISARKTDLQTIPL-CIKEVTFLNFTEEHAGT 815
+P A + ++ + + LH + +K + T+P ++E ++ EE
Sbjct: 485 FKPVLARIVNTITLRHSKNFIREELH---LPPQKRIVITVPFTAVEEQSYRQLYEEMCED 541
Query: 816 YN-ELVVTVRRNILMADWN--DPSHVESLLNPKQWKFRSTTIRNLRLSCC--VAGHIKVT 870
+ + R N DWN DPS ++ + + W R LR SC KV
Sbjct: 542 CGLDSSGSPRNN----DWNPNDPSVIDRM---RSWLVR------LRQSCLYPTGNRRKVF 588
Query: 871 DAGE----DIQETMDVLVENGLDPL--SQEYAFIKYNLLNG 905
AG + + ++V+++ D L ++E + + L G
Sbjct: 589 AAGNGPLRSVNDVLEVMIDQN-DALIHAEERSLLLSQLRRG 628
Score = 88 (36.0 bits), Expect = 1.2e-14, Sum P(6) = 1.2e-14
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTD-HKKPSAHS-----LAWDYDVVIT 666
S ATLI+ P ++ WK +I+ H P +L +F +T + P+ L D DVV+T
Sbjct: 320 SGATLIITPPVILGQWKQEIELHA-P-KLQVFHYTGIQRHPTLSDQELVELMADNDVVLT 377
Query: 667 TFNRLSAE 674
T+N L+ E
Sbjct: 378 TYNVLARE 385
Score = 63 (27.2 bits), Expect = 1.2e-14, Sum P(6) = 1.2e-14
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 226 GGMFCDEPGLGKTITALSL------ILKTQGTLADP 255
GG+ +E GLGKT+ +SL IL+ + T A+P
Sbjct: 277 GGVLAEEMGLGKTVEMISLMCLNRRILRPEETFAEP 312
Score = 58 (25.5 bits), Expect = 1.2e-14, Sum P(6) = 1.2e-14
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 166 KLFPHQQAAVEWMLHRE 182
+LFP Q+ AV W+L+RE
Sbjct: 200 ELFPFQRRAVRWLLNRE 216
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(6) = 1.2e-14
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 970 NTNTFLKQDLYRPNLESNKALPDKV 994
+T L + L+ LE KA+ +K+
Sbjct: 1017 STGKPLDRGLFAEKLEQEKAMEEKI 1041
Score = 38 (18.4 bits), Expect = 1.0e-12, Sum P(6) = 1.0e-12
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 199 EDGFY--FYVNTVSGDIATGTAPTMRDFH 225
ED Y F + G IA G T +DF+
Sbjct: 148 EDKDYDPFRIRRTRGPIARGDGWTPQDFY 176
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 171 (65.3 bits), Expect = 8.4e-14, Sum P(4) = 8.4e-14
Identities = 41/127 (32%), Positives = 71/127 (55%)
Query: 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG 1050
P K IIFSQ+ + ++E L I+F + M + +++ F +D ++M
Sbjct: 826 PIKTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSL 885
Query: 1051 SA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A +LGL++ V L++ W+ + E+Q I RAHR+G TRP+ V + ++ TVE+++L
Sbjct: 886 KAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILA 945
Query: 1110 FLQDTDR 1116
LQ+ R
Sbjct: 946 -LQEEKR 951
Score = 80 (33.2 bits), Expect = 8.4e-14, Sum P(4) = 8.4e-14
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 683 MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPM 742
+ +V W RV+LDE T+ + + T + L A RW L+G + + L
Sbjct: 466 LAKVGWFRVVLDEAQTIKN--HRTQVARACCGLRAKRRWCLSGTPIQ----NTIDDLYSY 519
Query: 743 LKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL 793
+FL + Y K++ I P +G +L +L M+ K L
Sbjct: 520 FRFLKYDPYAV-YKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTKGTL 569
Score = 70 (29.7 bits), Expect = 8.4e-14, Sum P(4) = 8.4e-14
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 226 GGMFCDEPGLGKTITALSLILK 247
GG+ D+ GLGKT++ ++LILK
Sbjct: 249 GGILADDQGLGKTVSTIALILK 270
Score = 68 (29.0 bits), Expect = 2.0e-12, Sum P(5) = 2.0e-12
Identities = 26/107 (24%), Positives = 49/107 (45%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRP-GQLHLFVWTD-HKKPSAHSLAWDYDVVITTFNRLSA 673
TLIV P+ +V W ++ + V +L + ++ ++ LA YDVV+TT+ +S
Sbjct: 345 TLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELA-KYDVVMTTYAIVSN 403
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR 720
E K P++ E + L S ++ K + + T ++
Sbjct: 404 EV---PKQPLVDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKKSK 447
Score = 53 (23.7 bits), Expect = 4.1e-12, Sum P(4) = 4.1e-12
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVS 210
+ + L HQ+ A+ WM +E N+ H + LA + G V+T++
Sbjct: 222 LSVPLMKHQKIALAWMFQKETNS---LHCMGGILADDQGLGKTVSTIA 266
Score = 45 (20.9 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 254 DPPDGVKIIWCTHNGDPRCGYYDLSGDKLTC 284
DPP+ + C H +C ++GD+ TC
Sbjct: 684 DPPEDPVVTLCGHIFCYQCVSDYITGDEDTC 714
Score = 44 (20.5 bits), Expect = 8.4e-14, Sum P(4) = 8.4e-14
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 911 HILCLDCVAM----DSEKCSLPGC 930
HI C CV+ D + C P C
Sbjct: 696 HIFCYQCVSDYITGDEDTCPAPRC 719
Score = 39 (18.8 bits), Expect = 2.0e-12, Sum P(5) = 2.0e-12
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 884 VENGLDPLSQEYAFIKYN 901
++N +D L + F+KY+
Sbjct: 509 IQNTIDDLYSYFRFLKYD 526
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 157 (60.3 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 39/155 (25%), Positives = 74/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDG 1050
DKV++ S + + + + EQ F + M + K +D F D+ C ++
Sbjct: 520 DKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSS 579
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L GT+EE++L+
Sbjct: 580 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQ 639
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
+ T + + L ++ E + H T D +
Sbjct: 640 --RQTHK--KSLSSTIID-NNESSEKHFTRDDLKD 669
Score = 92 (37.4 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 55/244 (22%), Positives = 105/244 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR----LS 672
++V PS LV +W+ + + ++ G+L K + + + + + +S
Sbjct: 220 IVVSPSSLVKNWEKEFTKWLQ-GRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLIS 278
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E R + + V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 279 YETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQ--- 333
Query: 733 XSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEMEEGRSR--------LLQLL 781
+ L+ ++ F++ E G ++ ++ ILR A+ EG + L+ L+
Sbjct: 334 -NDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLV 392
Query: 782 HRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPSH 837
+C+I R + T +P+ + V + T Y + + VRR++ AD N+ +
Sbjct: 393 DQCIIR-RTNQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNSDQVRRSL--ADCNEKAS 449
Query: 838 VESL 841
+ +L
Sbjct: 450 LTAL 453
Score = 66 (28.3 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI--LKTQGTLADP 255
DF+G + DE GLGKT+ ++L+ L QG + P
Sbjct: 180 DFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKP 214
Score = 40 (19.1 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 451 SVADATAAW-FCSMNSDPTHQSCGDPEEAWDNCQSI---TYLPGFHAKGTSDGKKQNVSF 506
++AD T CS + D HQ E+ ++N Q++ Y P S GK + F
Sbjct: 452 ALADITTLKKICS-HPDLIHQKIEAKEKGFENSQNVLPSNYKPKEICPEWS-GKFMLLDF 509
Query: 507 FISVLK----EHYLLINSMTK 523
++ ++ + +LI++ T+
Sbjct: 510 MLAAIRAAGNDKVVLISNYTQ 530
>CGD|CAL0000073 [details] [associations]
symbol:orf19.1667 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
PROSITE:PS51194 CGD:CAL0000073 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_721625.1
RefSeq:XP_721744.1 ProteinModelPortal:Q5AJC4 GeneID:3636587
GeneID:3636769 KEGG:cal:CaO19.1667 KEGG:cal:CaO19.9236
Uniprot:Q5AJC4
Length = 1250
Score = 130 (50.8 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 41/165 (24%), Positives = 84/165 (50%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIK---FAGMYSPMHSSNKI---KSLDMFRHDASC-LA 1045
K I+F +F + + + + L + I+ +A +P+ + + + D+ + + + +
Sbjct: 1076 KSIVFFEFEDSAYYLIELLEILKIRHIIYANFITPIKRAQNLYDFSNYDVDKEENNGGIC 1135
Query: 1046 LLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
L+M+ +S GL++ T ++ + P+ S+E Q I RAHR+G T+ + V+TL ++G V+
Sbjct: 1136 LVMNIAHSSHGLNIIAATHIYFINPVKQESIEAQAIKRAHRIGQTKEVTVKTLYLKG-VD 1194
Query: 1105 EQMLEFLQDTDRCRRLL--KEELVKPEREGARSHRTLHDFAESNY 1147
E L+ L ++ + KE E+E + DF S +
Sbjct: 1195 E--LKILSRNEKLKNAKNDKESFDAKEKEDNDNLLEFLDFDNSEH 1237
Score = 87 (35.7 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 669 NRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
NR S + G + + QV+W R+++DEGH + S + N Q+ L + RW ++G
Sbjct: 581 NRNSQKNGNSQVPSLRQVYWKRLIIDEGHIVQSKTS--NAAQICRLLFSERRWAVSG 635
Score = 79 (32.9 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 608 VRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKK 651
++LY+S TLI+VP L W +I HV P L + ++ K
Sbjct: 492 LKLYMSSTTLIIVPDNLFIQWVDEIAHHVEPNFLKILCAANYIK 535
Score = 77 (32.2 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMR 222
+K L+P Q +V ML RE P +I L + FY + + I A M
Sbjct: 303 IKSTLYPFQVKSVGLMLERECIKRRTIMPNFIKLESPLSSNFYFDLFTKRIYLH-ADVMS 361
Query: 223 DFHGGMFCDEPGLGKTITALSLILKTQGTLADPP 256
GG+ + GLGKT+ LSLI T+ + P
Sbjct: 362 LPLGGILGENMGLGKTLMCLSLINLTKYEITKIP 395
Score = 39 (18.8 bits), Expect = 3.6e-05, Sum P(4) = 3.6e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 378 SNICNDRN-AKGNSTAKKRANSSRQVPKRNQV 408
S C +++ A N ++K NS QVP QV
Sbjct: 569 SQSCLNKSFANKNRNSQKNGNS--QVPSLRQV 598
Score = 38 (18.4 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 734 SQLSHLQPMLK-FLHEEAYGQNQKAWDGGILRP 765
++L L ++ FL E Y K W I+ P
Sbjct: 677 TELQRLGVLISNFLKLEPYYTQPKLWTQDIINP 709
>UNIPROTKB|Q5AJC4 [details] [associations]
symbol:CaO19.1667 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
PROSITE:PS51194 CGD:CAL0000073 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 RefSeq:XP_721625.1
RefSeq:XP_721744.1 ProteinModelPortal:Q5AJC4 GeneID:3636587
GeneID:3636769 KEGG:cal:CaO19.1667 KEGG:cal:CaO19.9236
Uniprot:Q5AJC4
Length = 1250
Score = 130 (50.8 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 41/165 (24%), Positives = 84/165 (50%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIK---FAGMYSPMHSSNKI---KSLDMFRHDASC-LA 1045
K I+F +F + + + + L + I+ +A +P+ + + + D+ + + + +
Sbjct: 1076 KSIVFFEFEDSAYYLIELLEILKIRHIIYANFITPIKRAQNLYDFSNYDVDKEENNGGIC 1135
Query: 1046 LLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
L+M+ +S GL++ T ++ + P+ S+E Q I RAHR+G T+ + V+TL ++G V+
Sbjct: 1136 LVMNIAHSSHGLNIIAATHIYFINPVKQESIEAQAIKRAHRIGQTKEVTVKTLYLKG-VD 1194
Query: 1105 EQMLEFLQDTDRCRRLL--KEELVKPEREGARSHRTLHDFAESNY 1147
E L+ L ++ + KE E+E + DF S +
Sbjct: 1195 E--LKILSRNEKLKNAKNDKESFDAKEKEDNDNLLEFLDFDNSEH 1237
Score = 87 (35.7 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 669 NRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
NR S + G + + QV+W R+++DEGH + S + N Q+ L + RW ++G
Sbjct: 581 NRNSQKNGNSQVPSLRQVYWKRLIIDEGHIVQSKTS--NAAQICRLLFSERRWAVSG 635
Score = 79 (32.9 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 608 VRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKK 651
++LY+S TLI+VP L W +I HV P L + ++ K
Sbjct: 492 LKLYMSSTTLIIVPDNLFIQWVDEIAHHVEPNFLKILCAANYIK 535
Score = 77 (32.2 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMR 222
+K L+P Q +V ML RE P +I L + FY + + I A M
Sbjct: 303 IKSTLYPFQVKSVGLMLERECIKRRTIMPNFIKLESPLSSNFYFDLFTKRIYLH-ADVMS 361
Query: 223 DFHGGMFCDEPGLGKTITALSLILKTQGTLADPP 256
GG+ + GLGKT+ LSLI T+ + P
Sbjct: 362 LPLGGILGENMGLGKTLMCLSLINLTKYEITKIP 395
Score = 39 (18.8 bits), Expect = 3.6e-05, Sum P(4) = 3.6e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 378 SNICNDRN-AKGNSTAKKRANSSRQVPKRNQV 408
S C +++ A N ++K NS QVP QV
Sbjct: 569 SQSCLNKSFANKNRNSQKNGNS--QVPSLRQV 598
Score = 38 (18.4 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 734 SQLSHLQPMLK-FLHEEAYGQNQKAWDGGILRP 765
++L L ++ FL E Y K W I+ P
Sbjct: 677 TELQRLGVLISNFLKLEPYYTQPKLWTQDIINP 709
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 171 (65.3 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 91/371 (24%), Positives = 168/371 (45%)
Query: 762 ILRPFEAEMEEGRSRL-LQLLHRCM--ISARKTDLQT-----IPLCIKEVTFLNFTEEHA 813
+L+P + EG +L + +H + I R+T L+ +P + EV F EE
Sbjct: 485 MLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEE 544
Query: 814 GTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAG 873
Y L + +R +N +LN F+ T +R +A H + A
Sbjct: 545 DVYQSLYMDSKRK-----FNTYLAEGVVLNNYANIFQLIT--RMRQ---MADHPDLVLAS 594
Query: 874 EDIQETMDVL-VENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCV------AMDSEKCS 926
+ ++T+D+ EN + + E A + + C H C CV A D E +
Sbjct: 595 K--RKTVDIENQENIVCKICDEVA---QDAIES-RC-HHTFCRLCVTEYINAAGDGENVN 647
Query: 927 LPGCGFL---YEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPN 983
P C F+ ++ +P + E + + I++ S+R + L ++LY
Sbjct: 648 CPSC-FIPLSIDLSAPALEDFSEEKFKNASI-LNRIDMN-SWRSSTKIEA-LVEELYLLR 703
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
+ ++ L K I+FSQF + +I +L AG + M + +++ F +D +
Sbjct: 704 -KKDRTL--KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSNDINI 760
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A + L+L+ ++VF+M+P W+ +++ Q + R HR+G RPI V TL + +
Sbjct: 761 TIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENS 820
Query: 1103 VEEQMLEFLQD 1113
+E +++E LQ+
Sbjct: 821 IESKIIE-LQE 830
Score = 105 (42.0 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 40/163 (24%), Positives = 73/163 (44%)
Query: 605 LDSVRLYLS----RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD 660
+ ++ L LS + TL+V P + WK +I H + + S L+
Sbjct: 289 IQTIALLLSEPRGKPTLVVAPVVAIMQWKEEIDTHTNKALSTYLYYGQARDISGEELS-S 347
Query: 661 YDVVITTFNRLSAEW-----G-RRK------KSPMMQVHWLRVMLDEGHTLGSSLNLTNK 708
YDVV+T++N + + + G RRK KS + Q+ + R++LDE H + S N
Sbjct: 348 YDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKS--RTCNT 405
Query: 709 LQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAY 751
+ L + + L+G +++ L +L+FL + +
Sbjct: 406 ARAVCGLRTTRKICLSGTPLQ----NRIGELFSLLRFLRADPF 444
Score = 74 (31.1 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 224 FHGGMFCDEPGLGKTITALSLIL-KTQG--TLADPPDGVKIIWC----THNGDPRCGY-- 274
F GG+ DE G+GKTI ++L+L + +G TL P + W TH Y
Sbjct: 274 FGGGILADEMGMGKTIQTIALLLSEPRGKPTLVVAPVVAIMQWKEEIDTHTNKALSTYLY 333
Query: 275 Y----DLSGDKLTCNNMCLGKRTFSQNARRRQLS 304
Y D+SG++L+ ++ L ++ R++ S
Sbjct: 334 YGQARDISGEELSSYDVVLTSYNVIESVYRKERS 367
Score = 38 (18.4 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 165 LKLFPHQQAAVEWMLHRE 182
L L P Q+ V W+ +E
Sbjct: 253 LNLLPFQREGVYWLKRQE 270
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 149 (57.5 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 47/181 (25%), Positives = 86/181 (47%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEW 675
TL+V P+ L+ W+++++ V +L + V + + + DYD+V+TT+ ++ E
Sbjct: 527 TLVVCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVARE- 585
Query: 676 GRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXXXS 734
+ S + V W R++LDE H + N ++ +A+ L RW LTG
Sbjct: 586 -HKSLSAVFGVKWRRIILDEAHVVR---NHKSQSSLAVCDLRGKYRWALTGTPIQN---K 638
Query: 735 QLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQ 794
+L + +LKFL + + W I + + G++RL L+ M+ K LQ
Sbjct: 639 ELD-VYALLKFLRCSPF-DDLHTWKKWI----DNKSAGGQNRLNLLMKSLMLRRTKAQLQ 692
Query: 795 T 795
+
Sbjct: 693 S 693
Score = 102 (41.0 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 30/128 (23%), Positives = 61/128 (47%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLA 1045
K+ DK I+ SQ+ + ++ L+ G+ + + N+ ++ F R++ +
Sbjct: 905 KSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVL 964
Query: 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
LL + +GL+L + L++ W+ +E Q R +R+G + + + TVE
Sbjct: 965 LLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVE- 1023
Query: 1106 QMLEFLQD 1113
Q ++ LQD
Sbjct: 1024 QRIKGLQD 1031
Score = 62 (26.9 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ D+ GLGKT+T +S +L
Sbjct: 460 GGILADDMGLGKTLTMISSVL 480
Score = 48 (22.0 bits), Expect = 4.0e-13, Sum P(4) = 4.0e-13
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 163 MKLKLFPHQQAAVEWMLHRE 182
+K+ L HQ+ A+ WM RE
Sbjct: 435 LKVSLMNHQKHALAWMSWRE 454
Score = 44 (20.5 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 371 FHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVS 425
+++ EE ++ N+ ++ G S R + S ++ K ++ + VV + + E+ S
Sbjct: 8 YYSDKEEDSVVNN-SSLGRSRKSSRLSKSSRLSKSSRPSSAGVVIDETQSEEEES 61
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 133 (51.9 bits), Expect = 7.5e-13, Sum P(5) = 7.5e-13
Identities = 38/144 (26%), Positives = 71/144 (49%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLA--LLMD 1049
DK+IIF+ ++ ++ + I+F + M + +++ F LA LL+
Sbjct: 1079 DKIIIFTHWVPLARILGRVFEAEKIRFLYYFGSMGMGQRKTAVEKFTTIIGPLAPKLLIA 1138
Query: 1050 GSASLG--LDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
S G L+L+ RV L++ W+ ++E Q R HR+G T+ + + R T++E++
Sbjct: 1139 SSRCGGQALNLTAANRVILVDLWWNTAVERQAFGRVHRIGQTKDTYYVKIVTRKTIDERL 1198
Query: 1108 LEFLQDTD-RCRRLLK--EELVKP 1128
L+ + D + L+ E VKP
Sbjct: 1199 LDMQDEKDAKISNTLQDGEHKVKP 1222
Score = 96 (38.9 bits), Expect = 7.5e-13, Sum P(5) = 7.5e-13
Identities = 56/208 (26%), Positives = 91/208 (43%)
Query: 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKF 745
V W RV+LDE H + + L+ T+K + L + +RW L+G + + L P ++F
Sbjct: 665 VDWHRVVLDEAHAIKNHLSRTSKA--CVHLRSKHRWALSGTPIH----NTIEELYPYMRF 718
Query: 746 LHEE--AYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD------LQTIP 797
L E A ++ K GG P + + E SRL ++ MI R D + IP
Sbjct: 719 LRVEWAADMKDFKKKFGGT--PGDNDSEN--SRLAAVVPSLMIRRRVHDTFMGQPILRIP 774
Query: 798 LC--IKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIR 855
+K ++ TEE Y+ L R N+ N SH++ ++ K+ + T +
Sbjct: 775 PTHPVKTISVELSTEEKL-IYHRLEDRFRDNL-----N--SHIKEGVSSKKLRTYFTYLT 826
Query: 856 NLRLSCCVAGHIKVTDAGEDIQETMDVL 883
LR C + T D E D++
Sbjct: 827 RLR-QCTSHPFLLETSLRRDF-ELEDIV 852
Score = 64 (27.6 bits), Expect = 7.5e-13, Sum P(5) = 7.5e-13
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 225 HGGMFCDEPGLGKTITALSLILKTQG 250
+GG+ D+ GLGKT+ L+ + + QG
Sbjct: 545 YGGILADQMGLGKTVQMLACMAQNQG 570
Score = 59 (25.8 bits), Expect = 7.5e-13, Sum P(5) = 7.5e-13
Identities = 12/57 (21%), Positives = 31/57 (54%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672
TLIV P+ ++ WK+++++H + ++ ++D + + VVI ++ ++
Sbjct: 574 TLIVAPAAAIEQWKSELKKHCTFAK-RIWHYSDKNENQIPEVLKKEKVVIASYQAIA 629
Score = 56 (24.8 bits), Expect = 7.5e-13, Sum P(5) = 7.5e-13
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 159 IMPCMKLKLFPHQQAAVEWMLHREWN 184
++P MK LF HQ V +ML +E++
Sbjct: 515 LLPGMKTPLFNHQLVGVHFMLGKEFS 540
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 104 (41.7 bits), Expect = 1.5e-12, Sum P(5) = 1.5e-12
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 993 KVIIFSQFLEHIHVIEQQL---TVAGIKFAGMYSPMHSSNKIKSLDMF--------RHDA 1041
KV++FS + + + V+E ++ I+ G + +K K + + +
Sbjct: 1451 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1510
Query: 1042 SC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM 1099
S L LL+ A+ GL+L V L+EP+ + + E Q + R HR+G +P V +
Sbjct: 1511 SIQVLLLLVQHGAN-GLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLV 1569
Query: 1100 RGTVEEQM 1107
GTVEE +
Sbjct: 1570 SGTVEESI 1577
Score = 103 (41.3 bits), Expect = 1.5e-12, Sum P(5) = 1.5e-12
Identities = 53/215 (24%), Positives = 95/215 (44%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQ 740
+P+ ++ W R+ LDE + S N +MA+ L +RW +TG +L L
Sbjct: 593 TPLTRIFWWRICLDEAQMVES--NAAAATEMALRLYTKHRWCITGTPIQR----KLDDLF 646
Query: 741 PMLKFLHEEAYGQNQKAWDGGILRPFEAE----MEEGRSRLLQLLHRCMISARKTDLQTI 796
+LKFL + + + W I P+E ME Q++ R +LQ
Sbjct: 647 GLLKFLKANPFDVS-RWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLP 705
Query: 797 PL--CIKEVTFLNFTEEH--------AGTY-NELVVTVRRNILMADWNDPSHVESLLNPK 845
P C+ + F + EEH +Y E++ T++R+IL + S + + +
Sbjct: 706 PQEECVSWLKF-SAIEEHFYSRQHDTCVSYAREVIETLKRDILKRG-HTSSDNPLVTHAE 763
Query: 846 QWKFRSTTIRNLRLSCCVAGHIKVTDAG-EDIQET 879
K ++ ++ LR +CC H +V +G +Q++
Sbjct: 764 AAKLLNSLLK-LRQACC---HPQVGSSGLRSLQQS 794
Score = 84 (34.6 bits), Expect = 1.5e-12, Sum P(5) = 1.5e-12
Identities = 47/186 (25%), Positives = 72/186 (38%)
Query: 87 DGCDS------SIWNISDCHVLDW-KPD----SSR------VKPEDNSCSTGXXXXXXXX 129
D CDS IW S HV+ W +P+ +R VK ++S T
Sbjct: 196 DACDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGTRFNVKDIESSVVT-EDETLDSS 254
Query: 130 XXXXLTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLR 189
+ ++ + T L A ++P +L P+Q+ A WM+ RE +
Sbjct: 255 KQSSFDAAAFYEAIKPSKTDAMLGDDIADLLP----ELRPYQRRAAYWMVQRERGDPITL 310
Query: 190 ---------HPLYIDLATEDGFY-FYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTI 239
PL I + D ++N SG+I+ GG+ DE GLGKT+
Sbjct: 311 GDKEDNQFISPLSISVGFLDSATKMFLNPFSGNISLTPEYFSPRIQGGILADEMGLGKTV 370
Query: 240 TALSLI 245
L+ I
Sbjct: 371 ELLACI 376
Score = 65 (27.9 bits), Expect = 1.5e-12, Sum P(5) = 1.5e-12
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW-------DYDVVITT 667
ATLIV P+ ++ W ++I +H R G L ++ + S + D+V+TT
Sbjct: 501 ATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTT 560
Query: 668 FNRLSAE 674
++ L +
Sbjct: 561 YDVLKED 567
Score = 54 (24.1 bits), Expect = 1.5e-12, Sum P(5) = 1.5e-12
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 424 VSTDHFACNETWVQCDACHKWR 445
VS H WVQCD C W+
Sbjct: 418 VSESH-KYKGVWVQCDLCDAWQ 438
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 138 (53.6 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 34/122 (27%), Positives = 64/122 (52%)
Query: 988 KALP-DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LA 1045
K+ P ++++IFSQF + + ++E L ++F + + + +D F + + +
Sbjct: 776 KSRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVF 835
Query: 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
LL S G++L+ V L + ++ + Q RAHR+G TRP+HV L + T+EE
Sbjct: 836 LLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEE 895
Query: 1106 QM 1107
+
Sbjct: 896 NI 897
Score = 119 (46.9 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 69/305 (22%), Positives = 130/305 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA--HSLAWDYDVVITTFNRLSAE 674
L+VVPS + +W + ++ ++ + T ++ + + + D+DV++TT+ S
Sbjct: 466 LVVVPSSTLGNWLREFEKFCPSLRVESYSGTQSERINKRYYLMDTDFDVLVTTYQLASGS 525
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS 734
R +S + + + + DEGH L + ++ + + +++ A+ R L+TG
Sbjct: 526 --RDDRSFLRKQRFDISIFDEGHYLKN--RMSERYKHLMNIPANFRLLITGTPLQNNLKE 581
Query: 735 QLSHLQPML-KFLHEEAYGQN-----QKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISA 788
+S L ML K G + + DG I R + ++ E SR +++ ++
Sbjct: 582 LISLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERAYLSQ--ERISRAKTIMNPFILRR 639
Query: 789 RKTD-LQTIPLCIKEVTFLNFTEEHAGTY------NELVVTVRRNILMADWNDPSHVESL 841
RK + L +P I+ V + + E Y LV R NILM H L
Sbjct: 640 RKENVLSDLPPKIQHVEYCHMEETQLSLYLSVLELKNLVNANRENILMQLRKAALH--QL 697
Query: 842 LNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGED-IQETMDVLVENGLDPLSQEYAFIKY 900
L Q+ + ++ + R + DA I E M+V+ + L L+ +Y +
Sbjct: 698 LFRSQYNLETLSLMSKR----ILREDAYLDANPQYIFEDMEVMSDFELHKLADQYRHLHP 753
Query: 901 NLLNG 905
L G
Sbjct: 754 FALKG 758
Score = 52 (23.4 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 227 GMFCDEPGLGKTITALSLI--LKTQG 250
G+ DE GLGKT +S + LK +G
Sbjct: 435 GILADEMGLGKTCQVISFLASLKEKG 460
Score = 40 (19.1 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 459 WFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKG 495
W C M D CQ I++L KG
Sbjct: 424 WLCLMYKAKLSGILADEMGLGKTCQVISFLASLKEKG 460
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 139 (54.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 34/128 (26%), Positives = 65/128 (50%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS- 1042
L+ KA +V+IFSQ + ++E K++ + ++I ++D + S
Sbjct: 499 LKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSE 558
Query: 1043 -CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
+ LL + LG++L+ V L + W+ + Q + RAHR+G T+ ++V +
Sbjct: 559 KFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDN 618
Query: 1102 TVEEQMLE 1109
T+EE++LE
Sbjct: 619 TIEEKVLE 626
Score = 121 (47.7 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 55/215 (25%), Positives = 102/215 (47%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW-----DYDVVITTFNRL 671
L++VP +D+WK + + P ++++ V K+ A +A +DV IT++ +
Sbjct: 239 LVIVPKSTLDNWKREFGKWT-P-EVNVLVLQGAKEERAALIAERLVDESFDVCITSYEMI 296
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLLTGXXXXX 730
R+KS + + W +++DE H + N + L I L S NR L+TG
Sbjct: 297 L-----REKSHLKKFAWEYIIIDEAHRIK---NEESSLAQVIRLFNSRNRLLITGTPLQ- 347
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM----I 786
+ + L +L FL + +G ++ A+D + F E ++ + ++Q LHR + +
Sbjct: 348 ---NNIHELWALLNFLLPDVFGDSE-AFD----QWFSGEGQDSDT-VVQQLHRVLRPFLL 398
Query: 787 SARKTDLQTIPLCIKEVT-FLNFTEEHAGTYNELV 820
K D++ L KEV +L TE Y +++
Sbjct: 399 RRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKIL 433
Score = 51 (23.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S +
Sbjct: 207 GILADEMGLGKTLQTISFL 225
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 146 (56.5 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 44/183 (24%), Positives = 86/183 (46%)
Query: 974 FLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS 1033
F+ D + +N DKV++ S + + + + EQ + + M + K
Sbjct: 495 FMLLDFMLAAIRANS--DDKVVLISNYTQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKV 552
Query: 1034 LDMFRHDAS-CLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRP 1091
+D F ++ C ++ A GL+L R+F+ +P W+ + +EQ ++R R G +P
Sbjct: 553 VDRFNDPSTDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 612
Query: 1092 IHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHD----FA-ESN 1146
++ L G++EE++L+ + T + + L ++ E + H T D F+ E+N
Sbjct: 613 CYIYRLVASGSIEEKILQ--RQTHK--KSLSSTIID-NNESSEKHFTRDDLKDLFSFEAN 667
Query: 1147 YLS 1149
LS
Sbjct: 668 VLS 670
Score = 100 (40.3 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 63/253 (24%), Positives = 114/253 (45%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLH-LFVWTDHKKPSAHSLAWDYDVVITTFNR 670
+S+A +IV PS LV +W+ + + + G++H L + K+ + +L + T R
Sbjct: 206 ISKA-IIVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKEDTTRALE---QFAMNTATR 260
Query: 671 -------LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLL 723
+S E R + + V+ DEGH L +S NLT Q + L R LL
Sbjct: 261 CGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLL 318
Query: 724 TGXXXXXXXXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEMEEG-RSRLLQ 779
+G + L+ ++ F++ E G ++ ++ ILR A+ + R R LQ
Sbjct: 319 SGTPIQ----NDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTDAERQRALQ 374
Query: 780 -------LLHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNIL 828
L+++C+I R + T +P+ + V + T Y + + VRR++
Sbjct: 375 KTQELIGLVNQCIIR-RTNQILTKYLPVKFEMVVCVKLTPVQLQIYTNFLKSDQVRRSL- 432
Query: 829 MADWNDPSHVESL 841
AD N+ + + +L
Sbjct: 433 -ADCNEKASLTAL 444
Score = 56 (24.8 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 223 DFHGGMFCDEPGLGKTITALSLILKTQGTLADPPD 257
+F+G + DE GLGKT+ ++L T L PD
Sbjct: 170 NFNGCIMADEMGLGKTLQCVTL---TWTLLRQSPD 201
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 150 (57.9 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 40/173 (23%), Positives = 80/173 (46%)
Query: 974 FLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS 1033
F+ D + +N DKV++ S + + + + EQ + + M + K
Sbjct: 495 FMLLDFMLAAIRANS--DDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKV 552
Query: 1034 LDMFRHDAS-CLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRP 1091
+D F A+ C ++ A GL+L R+F+ +P W+ + +EQ ++R R G +P
Sbjct: 553 VDRFNDPATDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 612
Query: 1092 IHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
++ L G++EE++L+ + T + + L ++ + A H T D +
Sbjct: 613 CYIYRLVASGSIEEKILQ--RQTHK--KSLSSSIID-NNDSAEKHFTRDDLKD 660
Score = 95 (38.5 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 62/253 (24%), Positives = 112/253 (44%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLH-LFVWTDHKKPSAHSLAWDYDVVITTFNR 670
+S+A ++V PS LV +W+ + + + G++H L + K+ + +L + T R
Sbjct: 206 ISKA-IVVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKEDTTRTLE---QFAMNTATR 260
Query: 671 -------LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLL 723
+S E R + + V+ DEGH L +S NLT Q + L R LL
Sbjct: 261 CGTPVLLISYETFRLYSHILCKTEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLL 318
Query: 724 TGXXXXXXXXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILR-----PFEAEME---E 772
+G + L+ ++ F++ E G ++ ++ ILR +AE E E
Sbjct: 319 SGTPIQ----NDLTEYFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADSTDAERERALE 374
Query: 773 GRSRLLQLLHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNIL 828
L+ L+++C+I R + T +P+ + V T Y + + VRR++
Sbjct: 375 KTQELVGLVNQCIIR-RTNQILTKYLPVKFEMVVCAKLTAVQLQLYTNFLKSDQVRRSL- 432
Query: 829 MADWNDPSHVESL 841
AD D + + +L
Sbjct: 433 -ADCTDKTTLTAL 444
Score = 56 (24.8 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 223 DFHGGMFCDEPGLGKTITALSLILKTQGTLADPPD 257
+F+G + DE GLGKT+ ++L T L PD
Sbjct: 170 NFNGCIMADEMGLGKTLQCVTL---TWTLLRQSPD 201
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 152 (58.6 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 41/173 (23%), Positives = 79/173 (45%)
Query: 974 FLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS 1033
F+ D + +N DKV++ S + + + + EQ F + M + K
Sbjct: 499 FMLLDFMLATIRANS--DDKVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKV 556
Query: 1034 LDMFRH-DASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRP 1091
+D F + C ++ A GL+L R+F+ +P W+ + +EQ ++R R G +P
Sbjct: 557 VDRFNDPENDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 616
Query: 1092 IHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
++ L G++EE++L+ + T + + L ++ E A H T D +
Sbjct: 617 CYIYRLVASGSIEEKILQ--RQTHK--KSLSSTIID-NNESAEKHFTRDDLKD 664
Score = 89 (36.4 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 57/245 (23%), Positives = 105/245 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-----FNRL 671
+IV PS LV +W+ + + + G++H K + + +T +
Sbjct: 214 IIVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLI 272
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
S E R + + Q V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 273 SYETFRIYANILCQNEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQ-- 328
Query: 732 XXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILR-----PFEAEME---EGRSRLLQL 780
+ L+ ++ F++ E G ++ ++ IL+ + E E E L+ L
Sbjct: 329 --NDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALEKTQELIGL 386
Query: 781 LHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPS 836
+++C+I R + T +P+ + V + T Y + + VRR++ AD N+ +
Sbjct: 387 VNQCIIR-RTNQILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSDKVRRSL--ADCNEKA 443
Query: 837 HVESL 841
+ +L
Sbjct: 444 SLTAL 448
Score = 57 (25.1 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI 245
+F+G + DE GLGKT+ ++L+
Sbjct: 174 NFNGCIMADEMGLGKTLQCVTLV 196
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 164 (62.8 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 35/118 (29%), Positives = 66/118 (55%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
+V+I+SQF + I+++E + K+ + ++ +D F+ D S A L+ A
Sbjct: 1785 RVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMVDDFQSDPSIFAFLLSTRA 1844
Query: 1053 -SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+G++L+ V + W+ +++EQ RAHR+G TRP+ V L + T+EE++L+
Sbjct: 1845 CGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPVTVYRLITKNTIEEKILK 1902
Score = 96 (38.9 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 51/244 (20%), Positives = 100/244 (40%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD----------YDVVIT 666
LIV P + +WK + + V P + W ++ + W+ + V+IT
Sbjct: 1215 LIVTPKSTLHNWKNEFAKFV-PAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLIT 1273
Query: 667 TFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGX 726
++N + R + ++ W ++LDE H + SS + N+ + +S NR LLTG
Sbjct: 1274 SYNVIV-----RDEKYFHRLRWQYMVLDEAHAIKSSAS--NRWKTLMSFNCRNRLLLTGT 1326
Query: 727 XXXXXXXS--QLSH-LQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLH 782
L H + P H+E K + + + + E + +RL +L
Sbjct: 1327 PIQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMS--QGGLNEHQLNRLHMILK 1384
Query: 783 RCMISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILM--ADWNDPSHVE 839
M+ K D++ +P + + N T Y + + L+ A +++ ++
Sbjct: 1385 PFMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSIRSNISITELLGGASFSEQGSMK 1444
Query: 840 SLLN 843
+L+N
Sbjct: 1445 ALMN 1448
Score = 52 (23.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +++++
Sbjct: 1183 GILADEMGLGKTIQSIAVL 1201
Score = 48 (22.0 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 24/108 (22%), Positives = 44/108 (40%)
Query: 365 QVKKNLFHT-YDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEK 423
+VKK + Y+ S+ DR +S+ + NSS Y+ RP
Sbjct: 738 RVKKKMVDPKYNSSSSRSKDRYGSSSSSKSSKYNSSSSSSSSRSKDNKYI------RPSI 791
Query: 424 VSTDH-FACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQ 470
S+D F+ +E + + K RK +S + + + + +D +Q
Sbjct: 792 FSSDDDFSKDEDDEEFERLWKDRKKKKSSNGPSLSNSYSGIKTDQYNQ 839
Score = 44 (20.5 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 369 NLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVP 403
N+ + Y+ + I + + ++++ K NS+ +P
Sbjct: 125 NINNNYNNNNGINSSNSNNSSNSSNKSKNSNNNIP 159
Score = 44 (20.5 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 374 YDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSY 412
++ +N N+ N NS + R+ S P R + + Y
Sbjct: 26 HNNNNNNNNNNNNNNNSYRRSRSRSRSPSPTRGRSPVMY 64
Score = 43 (20.2 bits), Expect = 8.1e-11, Sum P(3) = 8.1e-11
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 362 NLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRAN-SSRQVPKRNQVGLS 411
++G + + + YD +N N+ N N+ K + +S K + + LS
Sbjct: 597 SIGNQRNSTDNLYDNSNNKNNNNNYNNNNNMLKNLDFNSNDHSKLDNILLS 647
Score = 42 (19.8 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 368 KNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRN 406
KN + ++ +N N+ N +S + +NSS + N
Sbjct: 117 KNNNNNFNNINNNYNNNNGINSSNSNNSSNSSNKSKNSN 155
Score = 41 (19.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 375 DEESNICNDRNAKGNSTAKKRANSS 399
D E + +DR ++G+S + + ++SS
Sbjct: 358 DRERSGRSDRESRGDSKSNRSSSSS 382
Score = 41 (19.5 bits), Expect = 2.8e-10, Sum P(4) = 2.8e-10
Identities = 21/100 (21%), Positives = 39/100 (39%)
Query: 462 SMNSDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINS- 520
S NS+ + S + + +N +I + G+S KQ F + LK +S
Sbjct: 138 SSNSNNSSNSSNKSKNSNNNIPNILPYISLNGSGSSSSSKQ---FSLPPLKSTTTSSSSN 194
Query: 521 MTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGETQG 560
T + + +K S ++ I G+ G ++G
Sbjct: 195 STSSSSSRSSKSHSSSSSSSSSSYPIKSIFGNIGGGSSKG 234
Score = 38 (18.4 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 375 DEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVS 425
D ES + N +S++ N++ N LS S+S +P S
Sbjct: 366 DRESRGDSKSNRSSSSSSSSLNNNNNNNNNNNNNPLSSSSSSSNRQPSTTS 416
Score = 37 (18.1 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 362 NLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQ 407
N Q N + + +N N N N+ +NS+ N+
Sbjct: 105 NGNQQSNNFINNKNNNNNFNNINNNYNNNNGINSSNSNNSSNSSNK 150
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 145 (56.1 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 51/192 (26%), Positives = 85/192 (44%)
Query: 935 EMQSPEILTRPENPNPK---WPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALP 991
+MQ+P + R +P WP +D + + S L D P L NK
Sbjct: 588 KMQNPVMQARLACNSPHNFYWPWAEDPSSIDETLVTASGKMLLL--DRLIPCL-LNKG-- 642
Query: 992 DKVIIFSQFLEHIHVIEQQLT-VAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMD 1049
K++IFSQF + +++ T + + + +++ + F D + LL
Sbjct: 643 HKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQAQIKAFNTDKDYKIFLLST 702
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ G++L V L + W+ + Q RAHR+G T+P+ V LA +GTVE+ +LE
Sbjct: 703 RAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVEQTLLE 762
Query: 1110 FLQDTDRCRRLL 1121
R RL+
Sbjct: 763 KADSKRRLERLV 774
Score = 90 (36.7 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 46/180 (25%), Positives = 84/180 (46%)
Query: 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASN 719
D+ VV T++ + RK + Q W +++DEGH L ++N ++ +S ++N
Sbjct: 305 DFPVVCTSYEICMND---RKF--LAQYQWRYIIVDEGHRL-KNMNC-RLIKELLSYNSAN 357
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQ-NQ-KAW-D-GGIL-RPFEAEMEEGR 774
R L+TG + ++ L +L FL E + N + W D +L + +M E R
Sbjct: 358 RLLITGTPLQ----NNITELWSLLHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDMIERR 413
Query: 775 SR-LLQLLHRCM---ISAR-KTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNIL 828
R L+ +H + + R KTD+++ +P + + + T E Y E++ R L
Sbjct: 414 KRTLVSTMHSILKPFLLRRVKTDVESALPKKREYILYAPLTLEQKDLYREILNGTGRQYL 473
Score = 62 (26.9 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ A+SLI
Sbjct: 223 GILADEMGLGKTVQAISLI 241
Score = 39 (18.8 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 283 TCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLK 320
T +C+ R F + R + V + + ++ C L+K
Sbjct: 311 TSYEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIK 348
Score = 38 (18.4 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 383 DRNAKGNSTAKKRANSSRQVPKRNQVGLSY 412
D N K AK + R+ P + +Y
Sbjct: 120 DNNEKKEEPAKSKRGRGRKAPAKGNTISNY 149
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 145 (56.1 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 38/155 (24%), Positives = 73/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCLALLMD 1049
DKV++ S + + + + EQ F + M + K +D F S L +L
Sbjct: 517 DKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSS 576
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+F+ +P W+ + +EQ ++R R G +P ++ + G++EE++L+
Sbjct: 577 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQ 636
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
+ T + + L ++ E A H T D +
Sbjct: 637 --RQTHK--KSLSSTIID-NNESAEKHFTRDDLKD 666
Score = 88 (36.0 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 57/244 (23%), Positives = 106/244 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR----LS 672
++V PS LV +W+ + + ++ L L + K+ + +L + + + +S
Sbjct: 217 IVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALE-QFSMTSSRLGTPVLLIS 275
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E R + + V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 276 YETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQ--- 330
Query: 733 XSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEMEEG-RSR-------LLQLL 781
+ L+ ++ F++ E G ++ ++ ILR + EG R R L+ L+
Sbjct: 331 -NDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEGERQRAIEKTQELIGLV 389
Query: 782 HRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPSH 837
+C+I R + T +P+ + V T Y + + VRR++ AD N+ +
Sbjct: 390 DQCIIR-RTNQILTKYLPVKFEMVICAKLTSIQLELYTNFLKSDQVRRSL--ADCNEKAS 446
Query: 838 VESL 841
+ +L
Sbjct: 447 LTAL 450
Score = 60 (26.2 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI--LKTQGTLADP 255
+F+G + DE GLGKT+ ++L+ L QG P
Sbjct: 177 NFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKP 211
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 136 (52.9 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIK----SLDMFRHDASCLALLM 1048
KVIIFS F + + + E L + +F+ Y + S S+ +F++D + L+
Sbjct: 350 KVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPRYMVFLL 409
Query: 1049 DGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
A GL+L + V ++ W+ + Q SR HR+G T+P+ + + +GTVE+QM
Sbjct: 410 STRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIFRIHAKGTVEDQM 469
Score = 92 (37.4 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 53/228 (23%), Positives = 101/228 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQH---VRPGQLHLFVWTDHKKPSAHSL-----AWDYDVVITTF 668
L+V P +++ W ++I + +RP H ++ + + A +++V+TT+
Sbjct: 43 LVVCPLSVLNTWMSEISRWTTGLRPMAYH---GGSEERENLRTCFRQQGAEPWNIVVTTY 99
Query: 669 NRLSAE-WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXX 727
L ++ W +K W V+LDEGH + +S + + Q L + NR +LTG
Sbjct: 100 ETLCSDLWFFQKTL------WAHVVLDEGHRIKNSRS--KRTQGVYRLRSENRIVLTGTP 151
Query: 728 XXXXXXSQLSHLQPMLKFLHEEAY-GQNQKAWDGGILRPFEAEMEE-GRSRLLQLLHRCM 785
+ L+ L +L +L+ + + K ++ + + + S + + L M
Sbjct: 152 IQ----NDLTELWSILHWLYPDVFVPATAKLFENAFSLT-DGKFDSIFLSHITRFLKVVM 206
Query: 786 ISARKTDLQTIPLCI---KEVTF-LNFTEEHAGTYNELVVTVRRNILM 829
+ K D Q I L + KE F + TE G Y ++ V +IL+
Sbjct: 207 LRRTKCDSQ-IGLDLPPKKETVFSVPLTELQLGWYRTILTGVDESILL 253
Score = 62 (26.9 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 226 GGMFCDEPGLGKTITALSL 244
GG+ D+ GLGKT+ ALSL
Sbjct: 10 GGILADDMGLGKTLQALSL 28
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 152 (58.6 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 38/155 (24%), Positives = 74/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDG 1050
DKV++ S + + + + EQ F + M + K +D F ++ C ++
Sbjct: 515 DKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSS 574
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L G++EE++L+
Sbjct: 575 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 634
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
+ T + + L ++ E A H T D +
Sbjct: 635 --RQTHK--KSLSSTIID-NNESAEKHFTRDDLKD 664
Score = 82 (33.9 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 56/245 (22%), Positives = 105/245 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-----FNRL 671
+IV PS LV +W+ + + + G++H K + + + +T +
Sbjct: 213 IIVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLI 271
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
S E R + + V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 272 SYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQ-- 327
Query: 732 XXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEM-EEGRSR-------LLQL 780
+ L+ ++ F++ E G ++ ++ ILR A+ ++ R R L++L
Sbjct: 328 --NDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQELIKL 385
Query: 781 LHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPS 836
+ +C+I R + T +P+ + V T Y + + VRR++ AD + +
Sbjct: 386 VDQCIIR-RTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL--ADCKEKA 442
Query: 837 HVESL 841
+ +L
Sbjct: 443 SLTAL 447
Score = 57 (25.1 bits), Expect = 4.5e-11, Sum P(3) = 4.5e-11
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI 245
+F+G + DE GLGKT+ ++L+
Sbjct: 173 NFNGCIMADEMGLGKTLQCVALV 195
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 149 (57.5 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 45/183 (24%), Positives = 85/183 (46%)
Query: 974 FLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS 1033
F+ D + +N DKV++ S + + + + EQ + + M + K
Sbjct: 495 FMLLDFMLAAIRANS--DDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKV 552
Query: 1034 LDMFRHDAS-CLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRP 1091
+D F +S C ++ A GL+L R+F+ +P W+ + +EQ ++R R G +P
Sbjct: 553 VDRFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKP 612
Query: 1092 IHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHD----FA-ESN 1146
++ L G++EE++L+ + T + + L ++ E H T D F+ E+N
Sbjct: 613 CYIYRLVASGSIEEKILQ--RQTHK--KSLSSTIID-NNESVEKHFTRDDLKDLFSFEAN 667
Query: 1147 YLS 1149
LS
Sbjct: 668 VLS 670
Score = 86 (35.3 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 58/248 (23%), Positives = 110/248 (44%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLH-LFVWTDHKKPSAHSL---AWDYDVVI-T 666
+S+A ++V PS LV +W+ + + + G++H L + K+ + +L A + T
Sbjct: 206 ISKA-IVVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKEETTRTLEQFAMNTSTRCGT 263
Query: 667 TFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGX 726
+S E R + + V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 264 PVLLISYETFRLYAHILCKTEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGT 321
Query: 727 XXXXXXXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEMEEG-RSR------ 776
+ L+ ++ F++ E G ++ ++ ILR A+ + R R
Sbjct: 322 PIQ----NDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTERERALLKTQ 377
Query: 777 -LLQLLHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWN 833
L+ L+++C+I R + T +P+ + V T Y + + + +AD N
Sbjct: 378 ELIGLVNQCIIR-RTNQILTKYLPVKFEMVVCAKLTAVQLQIYTNFLKSDQVCRSLADCN 436
Query: 834 DPSHVESL 841
+ + + +L
Sbjct: 437 EKTSLTAL 444
Score = 53 (23.7 bits), Expect = 9.6e-11, Sum P(3) = 9.6e-11
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 224 FHGGMFCDEPGLGKTITALSL 244
F+G + DE GLGKT+ ++L
Sbjct: 171 FNGCIMADEMGLGKTLQCVTL 191
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 136 (52.9 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + +IE L ++ + S +I +D F D
Sbjct: 840 LSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDI 899
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 900 FIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGT 959
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 960 IEESMLKISQ 969
Score = 109 (43.4 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 59/301 (19%), Positives = 134/301 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSL---AWDYDVVITTFNRLS 672
L+VVP+ +D+W + Q + L+ + + +K + + +++V++TT+N
Sbjct: 526 LVVVPASTMDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYNCAI 585
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ R +++++ + DEGH L + + + Q ++L A +R LLTG
Sbjct: 586 SSAEDRSLFRRLKLNF--AVFDEGHMLKNMSAI--RYQHLMTLNARSRLLLTGTPVQNNL 641
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEM-EEGR-SRLLQLLHRCMISARK 790
+S L ++ + + + ++ + E + E+ R + Q++ ++ K
Sbjct: 642 LELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVK 701
Query: 791 TD-LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDP-----SHVESLLNP 844
++ L+ +P ++ F +++ Y++L+ ++++I + N H+ + N
Sbjct: 702 SEVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSIDATEKNSELCNVMMHLRKMANH 761
Query: 845 KQWKFRSTTIRNLR-LSCCVAGHIKVTDAGED-IQETMDVLVENGLDPLSQEYAFI-KYN 901
+ T LR +S + DA D I E M+V+ + L L E+ + +Y
Sbjct: 762 PLLHRQYYTADRLRTMSKLMLKEPTHCDANPDLIFEDMEVMTDFELHRLCNEFTTLSQYK 821
Query: 902 L 902
L
Sbjct: 822 L 822
Score = 47 (21.6 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKT+ A++ +
Sbjct: 496 ILADEMGLGKTVQAIAFL 513
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 147 (56.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 39/155 (25%), Positives = 73/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCLALLMD 1049
DKV++ S + + + + EQ F + M + K +D F S L +L
Sbjct: 517 DKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSS 576
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L G++EE++L+
Sbjct: 577 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 636
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
+ T + + L ++ E A H T D +
Sbjct: 637 --RQTHK--KSLSSTIID-NNESAEKHFTRDDLKD 666
Score = 80 (33.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 56/244 (22%), Positives = 104/244 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR----LS 672
++V PS LV +W+ + + + L L + K+ + +L + + +S
Sbjct: 217 IVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALE-QFSMTSARLGTPVLLIS 275
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E R + + V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 276 YETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQ--- 330
Query: 733 XSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEM-EEGRSR-------LLQLL 781
+ L+ ++ F++ E G ++ ++ ILR + E+ R R L+ L+
Sbjct: 331 -NDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLV 389
Query: 782 HRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPSH 837
+C+I R + T +P+ + V T Y + + VRR++ AD N+ +
Sbjct: 390 DQCIIR-RTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSL--ADCNEKAS 446
Query: 838 VESL 841
+ +L
Sbjct: 447 LTAL 450
Score = 60 (26.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI--LKTQGTLADP 255
+F+G + DE GLGKT+ ++L+ L QG P
Sbjct: 177 NFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKP 211
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 126 (49.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 45/192 (23%), Positives = 91/192 (47%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS-----LAWDYDVVITTFNRL 671
L++ P +++W +I + P ++ F+ K+ A L D+DVVI ++ +
Sbjct: 249 LVIAPKSTLNNWLREINRWT-P-DVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEII 306
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
R+KSP+ +++W +++DE H + + ++ + Q+ T+ NR L+TG
Sbjct: 307 I-----REKSPLKKINWEYIIIDEAHRIKNEESMLS--QVLREFTSRNRLLITGTPLQ-- 357
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT 791
+ L L +L FL + + Q D E + ++ +L +L ++ K+
Sbjct: 358 --NNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKS 415
Query: 792 DLQTIPLCIKEV 803
D++T L KE+
Sbjct: 416 DVETSLLPKKEL 427
Score = 116 (45.9 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 32/128 (25%), Positives = 62/128 (48%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS- 1042
L+ K +V+IFSQ + ++E ++ + ++I+++D + S
Sbjct: 511 LKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSK 570
Query: 1043 -CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
+ LL + LG++L+ V L + W+ + Q + RAHR+G + + V L
Sbjct: 571 KFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDN 630
Query: 1102 TVEEQMLE 1109
+VEE++LE
Sbjct: 631 SVEEKILE 638
Score = 51 (23.0 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S +
Sbjct: 217 GILADEMGLGKTLQTISFL 235
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 153 (58.9 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 43/173 (24%), Positives = 83/173 (47%)
Query: 939 PEILTRPENP-NPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIF 997
P ++ P +P ++ V +DL++ N+ FL D P L K KV++F
Sbjct: 574 PYLIEYPLDPATQQFKVDEDLVK---------NSGKFLLLDRMLPEL---KKRGHKVLMF 621
Query: 998 SQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGL 1056
SQ + ++ + G KF+ + M S++ +++ F +D L+ A LG+
Sbjct: 622 SQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNNDPEVFLFLVSTRAGGLGI 681
Query: 1057 DLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+L+ V + + W+ + Q R HR+G T+P+ V L T++++++E
Sbjct: 682 NLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
Score = 82 (33.9 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 42/179 (23%), Positives = 81/179 (45%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS-SLNLTNKLQMAISLTASN 719
+ VVIT+F E R ++ + W +++DEGH + + + L +L+ A N
Sbjct: 325 HPVVITSF-----EIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKR---FNADN 376
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYG--QNQKAW-D-GGILRPFEAEM-EEGR 774
+ LLTG + L+ L +L FL + + ++ ++W D I E + +E
Sbjct: 377 KLLLTGTPLQ----NNLAELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKE 432
Query: 775 SRLLQLLHRCM----ISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNIL 828
+L +LH+ + + K+D+ +P + V + ++ Y +V RN+L
Sbjct: 433 QNILHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAIVNRTIRNLL 491
Score = 51 (23.0 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI ++ I
Sbjct: 243 GILADEMGLGKTIQCIATI 261
Score = 48 (22.0 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 739 LQPMLKFLHEEAYGQNQKAWDGGILRPFEAE-ME 771
L P+ KF + Q K + GG++R ++ E ME
Sbjct: 198 LDPVRKFNGQPVPFQQPKIFTGGVMRWYQVEGME 231
Score = 39 (18.8 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 384 RNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVS 425
++AKG + A + S KR + +Y +S + E +S
Sbjct: 108 KSAKGQNPADGKEEKSATKKKRGRDDGTYNISEIMSKEEILS 149
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 155 (59.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 58/235 (24%), Positives = 105/235 (44%)
Query: 610 LYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN 669
++ S TLIV P+ L+ HWK +I++ V +L ++++ + + YD+VITT++
Sbjct: 618 VFTSTGTLIVCPASLIHHWKNEIEKRVNSNKLRIYLYHGPNRIQHAKVLSTYDIVITTYS 677
Query: 670 RLSAEWGRRK---------------KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI- 713
L+ E K +P++QV W R++LDE H + + T+ +A+
Sbjct: 678 LLAKEIPTAKHEGEVPGAKLSVEGISAPLLQVVWARIILDEAHNVKNPRVQTS---IAVC 734
Query: 714 SLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAW----DGGILRPFEAE 769
L A RW +TG + L + ++KFL + + W D G ++ E
Sbjct: 735 KLQAQARWAVTGTPIQ----NNLLDMYSLMKFLRCSPFDEFS-LWKSQVDNGSMKGGERL 789
Query: 770 MEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVR 824
+S LL+ + S K L +P ++ L +E+ Y+ + R
Sbjct: 790 SILTKSLLLRRTKDQLDSTGKP-LVPLPARSCQLHRLKLSEDERAVYDVFLARSR 843
Score = 77 (32.2 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 226 GGMFCDEPGLGKTITALSLIL--KTQGTLADPPDGVKIIWCTHN 267
GG+ D+ GLGKT+T ++LIL K Q + + ++W + N
Sbjct: 571 GGILADDMGLGKTLTMIALILTKKNQQKSKEKDRSLPVMWLSKN 614
Score = 55 (24.4 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 22/77 (28%), Positives = 32/77 (41%)
Query: 108 SSRVKPEDNS-CSTGXXXXXXXXXXXXLTRLGPIDLVRIAATCRHLRCLAASIMPC-MKL 165
S + PE S CS G +T +L R +C +A P +K+
Sbjct: 491 SRQETPEGASQCSGGHTNEHRLYNVWKITSEAIDELHRSLESCPGKTAVAED--PAGLKV 548
Query: 166 KLFPHQQAAVEWMLHRE 182
L HQ+ A+ W+L RE
Sbjct: 549 PLLLHQKQALAWLLWRE 565
Score = 39 (18.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 30/106 (28%), Positives = 42/106 (39%)
Query: 383 DRNAKGNSTAKKRANSSRQVPKR-NQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDAC 441
D N KG+S K +S +P +Q + V N ++ + F E ++ A
Sbjct: 96 DPNPKGHSVTCKPQLASESLPHPPSQPRNPFRVLNKNQKT--LEWKQFVEGEGEIKT-AD 152
Query: 442 HKWRK----LLDASVADATAAWFCSMNSDP------THQSCGDPEE 477
K R+ LLD + C M DP T QS GD EE
Sbjct: 153 KKLRENREQLLDQKKEQKPKSK-CRMEKDPSSDLVVTRQSGGDGEE 197
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 133 (51.9 bits), Expect = 2.5e-10, Sum P(4) = 2.5e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 863 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 923 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGT 982
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 983 IEESMLKINQ 992
Score = 104 (41.7 bits), Expect = 2.5e-10, Sum P(4) = 2.5e-10
Identities = 29/113 (25%), Positives = 60/113 (53%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ ++ + + ++ + HS DY+V++TT+N
Sbjct: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAI 608
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ R +++++ + DEGH L + ++ + Q +++ A+NR LLTG
Sbjct: 609 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINANNRLLLTG 657
Score = 57 (25.1 bits), Expect = 2.5e-10, Sum P(4) = 2.5e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFL 536
Score = 39 (18.8 bits), Expect = 2.5e-10, Sum P(4) = 2.5e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 246 SSNWEKQESIVL 257
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 145 (56.1 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 37/155 (23%), Positives = 73/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDG 1050
DKV++ S + + + + E F + M + K +D F ++ C ++
Sbjct: 515 DKVVLISNYTQTLDLFELLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSS 574
Query: 1051 SAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L G++EE++L+
Sbjct: 575 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 634
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
+ T + + L ++ E A H T D +
Sbjct: 635 --RQTHK--KSLSSTIID-NNESAEKHFTRDDLKD 664
Score = 82 (33.9 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 56/245 (22%), Positives = 105/245 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-----FNRL 671
+IV PS LV +W+ + + + G++H K + + + +T +
Sbjct: 213 IIVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLI 271
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
S E R + + V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 272 SYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQ-- 327
Query: 732 XXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEAEM-EEGRSR-------LLQL 780
+ L+ ++ F++ E G ++ ++ ILR A+ ++ R R L++L
Sbjct: 328 --NDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALEKTQELIKL 385
Query: 781 LHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPS 836
+ +C+I R + T +P+ + V T Y + + VRR++ AD + +
Sbjct: 386 VDQCIIR-RTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSL--ADCKEKA 442
Query: 837 HVESL 841
+ +L
Sbjct: 443 SLTAL 447
Score = 57 (25.1 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI 245
+F+G + DE GLGKT+ ++L+
Sbjct: 173 NFNGCIMADEMGLGKTLQCVALV 195
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 133 (51.9 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 861 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 920
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 921 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGT 980
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 981 IEESMLKINQ 990
Score = 103 (41.3 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 59/304 (19%), Positives = 132/304 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ + + + ++ + H+ DY+V++TT+N
Sbjct: 547 LIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAI 606
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ R +++++ + DEGH L + ++ + Q +++ A NR LLTG
Sbjct: 607 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINARNRLLLTGTPVQNNL 662
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL---QLLHRCMISAR 789
+S L ++ + + + ++ + +P + + + R+ Q++ ++
Sbjct: 663 LELMSLLNFVMPHMFSSSTSEIRRMFSSKT-KPADEQSIYEKERIAHAKQIIKPFILRRV 721
Query: 790 KTD-LQTIPLCIKEVTFLNFTEE----HAGTYNEL---VVTVRRNILMADWNDPSHVESL 841
K + L+ +P ++ +E+ ++G +N L + + +N M N + +
Sbjct: 722 KEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMC--NVMMQLRKM 779
Query: 842 LNPKQWKFRSTTIRNLR-LSCCVAGHIKVTDAGED-IQETMDVLVENGLDPLSQEYAFIK 899
N + T L+ +S + +A D I E M+V+ + L L ++Y I
Sbjct: 780 ANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHIN 839
Query: 900 -YNL 902
Y L
Sbjct: 840 SYQL 843
Score = 57 (25.1 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 512 HGLNGILADEMGLGKTIQAIAFL 534
Score = 39 (18.8 bits), Expect = 3.1e-10, Sum P(4) = 3.1e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 245 SSNWEKQESIVL 256
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 147 (56.8 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 39/155 (25%), Positives = 73/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCLALLMD 1049
DKV++ S + + + + EQ F + M + K +D F S L +L
Sbjct: 517 DKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSS 576
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+F+ +P W+ + +EQ ++R R G +P ++ L G++EE++L+
Sbjct: 577 KAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQ 636
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
+ T + + L ++ E A H T D +
Sbjct: 637 --RQTHK--KSLSSTIID-NNESAEKHFTRDDLKD 666
Score = 76 (31.8 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 68/312 (21%), Positives = 134/312 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR----LS 672
++V PS LV +W+ + + ++ L L + K+ + +L + + + +S
Sbjct: 217 IVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALE-QFSMTSSRLGTPVLLIS 275
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E R + + V+ DEGH L +S NLT Q + L R LL+G
Sbjct: 276 YETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT--YQALMGLKTKRRVLLSGTPIQ--- 330
Query: 733 XSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILR-----PFEAEMEEGRSR---LLQLL 781
+ L+ ++ F++ E G ++ ++ ILR +AE + ++ L+ L+
Sbjct: 331 -NDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTDAERQRAIAKTQELIGLV 389
Query: 782 HRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT--VRRNILMADWNDPSH 837
+C+I R + T +P+ + V T Y + + VRR++ AD + +
Sbjct: 390 DQCIIR-RTNQILTKYLPVKFEMVICAKLTSIQLELYTNFLKSDQVRRSL--ADCKEKAS 446
Query: 838 VESLLNPKQWKFRSTTIRNLRLSCCVAGHI--KVTDAGEDIQETMDVLVEN----GLDP- 890
+ +L + TT++ + C I K+T + + + +VL N L+P
Sbjct: 447 LTALAD-------ITTLKKI---CSHPNLIYEKITARDKGFENSQNVLPSNYNAKDLNPE 496
Query: 891 LSQEYAFIKYNL 902
LS ++ + + L
Sbjct: 497 LSGKFMLLDFML 508
Score = 60 (26.2 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI--LKTQGTLADP 255
+F+G + DE GLGKT+ ++L+ L QG P
Sbjct: 177 NFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKP 211
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 121 (47.7 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 47/224 (20%), Positives = 103/224 (45%)
Query: 892 SQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPK 951
SQ F LL GN H++C+ + + C+ P C ++ E + + K
Sbjct: 566 SQAVRFCLQGLL--GNS-PHLICIGAL---KKLCNHP-CLLFNSIKEKECSSTWDGKEEK 618
Query: 952 WPVPQDLIELQPS-YR--QWSNTNTFLKQDLYRPNLESNKALP-DKVIIFSQFLEHIHVI 1007
+ + L+++ P+ Y +S + Q L + ++ P +KV++ S + + + ++
Sbjct: 619 -SLYEALLDVFPADYNPLMFSEEESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDIL 677
Query: 1008 EQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLALLMDGSASLGLDLSFVTRVF 1065
++ G + + S + + +D F ++ + + LL + +GL+L + +
Sbjct: 678 QEVCKRHGYTYTRLDGQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLI 737
Query: 1066 LMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
L + W+ + + Q +SR R G P+H+ L GT+EE++ +
Sbjct: 738 LYDIDWNPATDIQAMSRVWRDGQKNPVHIYRLLTTGTIEEKIYQ 781
Score = 101 (40.6 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLF-VWTDHKKPSAHSLAWDYDVVITTFNRLS 672
+ TLIV P LV++W+ + Q+ + ++ +F V DHK + Y V+I ++ L
Sbjct: 357 KKTLIVTPGSLVNNWRKEFQKWLGSERIKIFPVDQDHKVEEFTRSPF-YSVLIISYEMLL 415
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTG 725
R + V + ++ DEGH L S++ T L ISL+ R +LTG
Sbjct: 416 -----RSLDQIKNVKFGLLICDEGHRLKNSAIKTTAAL---ISLSCEKRVILTG 461
Score = 64 (27.6 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 226 GGMFCDEPGLGKTITALSLI--LKTQGTLADPP 256
G + DE GLGKT+ +SLI L+ QG P
Sbjct: 322 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKP 354
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 145 (56.1 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 35/127 (27%), Positives = 65/127 (51%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L S K +V+IFSQ+ + ++E L V G+ + + +++ +D F +D S
Sbjct: 597 LPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSI 656
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
A L+ A GL+L+ V + + ++ ++ Q R HR+G T+P+ + L + T
Sbjct: 657 FACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKST 716
Query: 1103 VEEQMLE 1109
V+E + E
Sbjct: 717 VDENIYE 723
Score = 78 (32.5 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 37/164 (22%), Positives = 71/164 (43%)
Query: 663 VVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWL 722
V + F R S E + + + + W V++DE H L + K M+++ A+ R +
Sbjct: 323 VCYSLFERHS-EQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLM 381
Query: 723 LTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLH 782
LTG + L L +L+F+ + + D + + AE E +R+ +L
Sbjct: 382 LTGTPLQ----NDLHELWSLLEFMLPDIFTTENV--D--LKKLLNAEDTELITRMKSILG 433
Query: 783 RCMISARKTDL--QTIPLCIKEVTFLNFTEEHAGTYNELVVTVR 824
++ K+D+ Q +P I+ V ++ + Y E + R
Sbjct: 434 PFILRRLKSDVMQQLVPK-IQRVEYVLMERKQEDAYKEAIEEYR 476
Score = 58 (25.5 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 222 RDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWC 264
+ G + DE GLGKTI A++ + DP G ++ C
Sbjct: 230 KGIEGAILADEMGLGKTIQAITYLTLLSRLNNDP--GPHLVVC 270
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 116 (45.9 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 27/120 (22%), Positives = 62/120 (51%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLALLMD 1049
+KV++ S + + ++++++ G + + S + + +D F +H + + LL
Sbjct: 661 EKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSS 720
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+L + + L + W+ + + Q +SR R G P+H+ L GT+EE++ +
Sbjct: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQ 780
Score = 105 (42.0 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLF-VWTDHKKPSAHSLAWDYDVVITTFNRLS 672
+ TLIV P LV++WK + Q+ + ++ +F V DHK + Y V+I ++ L
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIF-YSVLIISYEMLL 414
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTG 725
R + + + ++ DEGH L S++ T L ISL+ R +LTG
Sbjct: 415 -----RSLDQIKNIKFDLLICDEGHRLKNSAIKTTTAL---ISLSCEKRIILTG 460
Score = 64 (27.6 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 226 GGMFCDEPGLGKTITALSLI--LKTQGTLADPP 256
G + DE GLGKT+ +SLI L+ QG P
Sbjct: 321 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKP 353
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 133 (51.9 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 866 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 925
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 926 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGT 985
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 986 IEESMLKINQ 995
Score = 100 (40.3 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 28/113 (24%), Positives = 60/113 (53%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ ++ + + ++ + HS +Y+V++TT+N
Sbjct: 552 LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAI 611
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ R +++++ + DEGH L + ++ + Q +++ A+NR LLTG
Sbjct: 612 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINANNRLLLTG 660
Score = 57 (25.1 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 517 HGLNGILADEMGLGKTIQAIAFL 539
Score = 39 (18.8 bits), Expect = 6.2e-10, Sum P(4) = 6.2e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 249 SSNWEKQESIVL 260
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 134 (52.2 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMDGS 1051
+V+IF+Q + + ++EQ L + G ++ + + + F +D + +L S
Sbjct: 1009 RVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRS 1068
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
LG++L+ V + W+ ++ Q R+HR+G TR +H+ L TVE ML
Sbjct: 1069 GGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNML 1125
Score = 100 (40.3 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 49/244 (20%), Positives = 103/244 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW----DYDVVITTFNRLS 672
LI+VP+ ++ +W+ + ++ + PG L + + ++ W + V IT++ +
Sbjct: 500 LIIVPTSVMLNWEMEFKKFL-PGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVL 558
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ P + W ++LDE H + + + + Q ++ A +R LLTG
Sbjct: 559 QD-----HQPFRRKKWQYMILDEAHNIKNFRS--QRWQSLLNFNAEHRLLLTGTPLQNNL 611
Query: 733 X---SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRS------RLLQLLHR 783
S L L P + A+ N K + +P + +EEG+ + LHR
Sbjct: 612 VELWSLLYFLMPAGVTQNNSAFA-NLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHR 670
Query: 784 CM----ISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHV 838
+ + KT+++ +P + V + ++ Y++ + R ++A N S +
Sbjct: 671 VLRPYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNFMSII 730
Query: 839 ESLL 842
L+
Sbjct: 731 NCLM 734
Score = 54 (24.1 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI ++L+
Sbjct: 468 GILADEMGLGKTIQTIALL 486
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 143 (55.4 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 42/163 (25%), Positives = 79/163 (48%)
Query: 974 FLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS 1033
FL D P L K KV+IFSQ + ++ + G +++ + M +++ ++
Sbjct: 617 FLILDRMLPEL---KKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDEN 673
Query: 1034 LDMFRHDASC-LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092
+ F D L LL + LG++L+ V + + W+ + Q R HR+G T+P+
Sbjct: 674 MKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPV 733
Query: 1093 HVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARS 1135
V L T++E++LE R+L K + K + +G+++
Sbjct: 734 VVHRLITANTIDEKILE---RASAKRKLEKMVIHKNKFKGSKA 773
Score = 89 (36.4 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 52/207 (25%), Positives = 90/207 (43%)
Query: 663 VVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN--LTNKLQMAISLTASNR 720
VV+T+F E R + + + HW +++DEGH + +LN L +L+M L N+
Sbjct: 338 VVVTSF-----EIAMRDRKFLQRFHWNYLIVDEGHRI-KNLNCRLVQELKM---LPTDNK 388
Query: 721 WLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYG--QNQKAWDGGILRPFEAE---MEEGRS 775
LLTG + LS L +L FL + + ++ ++W +AE E
Sbjct: 389 LLLTGTPLQ----NNLSELWSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVANEREQ 444
Query: 776 RLLQLLHRCM----ISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELV-VTVRRNILM 829
+L +LH + + K+D+ +P + V + T + Y +V T+ + L+
Sbjct: 445 NILHMLHLILTPFLLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIVNKTIAK--LL 502
Query: 830 ADWNDPSHVESLLNPKQWKFRSTTIRN 856
D S L + K RS + N
Sbjct: 503 GQEKDESAPAPLTPSGRPKRRSRKVVN 529
Score = 49 (22.3 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI ++ I
Sbjct: 254 GILADEMGLGKTIQCIAHI 272
Score = 41 (19.5 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 736 LSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRC 784
+ L+ L+ + +E Q + P +A++ +L LL RC
Sbjct: 538 MKDLEKYLEKVQQELDSQASSTPVVNVFMPVDAQVNLKLQNILMLLKRC 586
Score = 38 (18.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 936 MQSPEILTRPENPNPKWPVPQDLIELQPS-YRQWSNTNTFLKQDLYRPNLESNKALPD 992
M EI+++ + P + Q ++L+ + S+TN+ +K L E++K + D
Sbjct: 154 MTKEEIMSKAKKPKMEEEA-QASVKLEAEDIEKLSDTNSDIKGRLSETLRENSKQMLD 210
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 133 (51.9 bits), Expect = 7.5e-10, Sum P(4) = 7.5e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 858 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 917
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 918 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGT 977
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 978 IEESMLKINQ 987
Score = 99 (39.9 bits), Expect = 7.5e-10, Sum P(4) = 7.5e-10
Identities = 59/304 (19%), Positives = 131/304 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ + + + ++ + H+ DY+V++TT+N
Sbjct: 544 LIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAI 603
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ R +++++ + DEGH L + ++ + Q +++ A NR LLTG
Sbjct: 604 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINARNRLLLTGTPVQNNL 659
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL---QLLHRCMISAR 789
+S L ++ + + + ++ + +P + + + R+ Q++ ++
Sbjct: 660 LELMSLLNFVMPHMFSSSTSEIRRMFSSKT-KPADEQSIYEKERIAHAKQIIKPFILRRV 718
Query: 790 KTD-LQTIPLCIKEVTFLNFTEE----HAGTYNEL---VVTVRRNILMADWNDPSHVESL 841
K + L+ +P + +E+ ++G +N L + + +N M N + +
Sbjct: 719 KEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMC--NVMMQLRKM 776
Query: 842 LNPKQWKFRSTTIRNLR-LSCCVAGHIKVTDAGED-IQETMDVLVENGLDPLSQEYAFIK 899
N + T L+ +S + +A D I E M+V+ + L L ++Y I
Sbjct: 777 ANHPLLHRQYYTPEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHIN 836
Query: 900 -YNL 902
Y L
Sbjct: 837 SYQL 840
Score = 57 (25.1 bits), Expect = 7.5e-10, Sum P(4) = 7.5e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 509 HGLNGILADEMGLGKTIQAIAFL 531
Score = 39 (18.8 bits), Expect = 7.5e-10, Sum P(4) = 7.5e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 242 SSNWEKQESIVL 253
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 160 (61.4 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 37/134 (27%), Positives = 72/134 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K++IFSQF + +IE +L AGI + + ++ +D F+ + L+ +
Sbjct: 983 KILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTKRQEV--VDKFQRGEVPVFLISLRAG 1040
Query: 1053 SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112
+GL+L+ V +P W+ ++E Q RA+R+G +P+ V L + ++EE++ + Q
Sbjct: 1041 GVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQ 1100
Query: 1113 D-TDRCRRLLKEEL 1125
+ + + LL EE+
Sbjct: 1101 NKAELAKALLSEEV 1114
Score = 76 (31.8 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 25/71 (35%), Positives = 33/71 (46%)
Query: 221 MRDFH-GGMFCDEPGLGKTITALS--LILKTQGTLADP-----PDGVKIIWCTH--NGDP 270
+R++ G+ D+ GLGKTI L+ LI K QG L P P V W P
Sbjct: 676 LREYQLNGILADDMGLGKTIQTLAHLLIEKQQGRLTKPILIVAPTSVIFNWANEIDKFTP 735
Query: 271 RCGYYDLSGDK 281
+ Y L G+K
Sbjct: 736 QLSYQVLHGNK 746
Score = 58 (25.5 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 51/232 (21%), Positives = 92/232 (39%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW-------DYDVV 664
L++ LIV P+ ++ +W +I + P QL V +K+ D++
Sbjct: 710 LTKPILIVAPTSVIFNWANEIDKFT-P-QLSYQVLHGNKRHEQFGCLEGVENGENQVDII 767
Query: 665 ITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMA-ISLTASNRWLL 723
IT++ ++ + + ++L +LDE H + N KL A ++L A ++ L
Sbjct: 768 ITSYALITKDLAHYTDR---KFYYL--VLDEAHYIK---NTKTKLYQAFLTLKAQHKLCL 819
Query: 724 TGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL-QLLH 782
TG + L FL G Q+ + P E E R +LL Q +
Sbjct: 820 TGTPME----NHLGEFWAQFNFLLPGFLG-GQRQFTKLFRTPIEKHGELERKQLLNQRIK 874
Query: 783 RCMISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNE--LVVTVRRNILMAD 831
++ K + T +P + + L + A Y L + R ++AD
Sbjct: 875 PFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIAD 926
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 160 (61.4 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 37/134 (27%), Positives = 72/134 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K++IFSQF + +IE +L AGI + + ++ +D F+ + L+ +
Sbjct: 983 KILIFSQFTSMLSLIEDELIDAGIGYVKLTGSTTKRQEV--VDKFQRGEVPVFLISLRAG 1040
Query: 1053 SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112
+GL+L+ V +P W+ ++E Q RA+R+G +P+ V L + ++EE++ + Q
Sbjct: 1041 GVGLNLTAADTVIHFDPWWNPAVENQATDRAYRIGQNKPVFVYKLIIENSIEEKIQKIQQ 1100
Query: 1113 D-TDRCRRLLKEEL 1125
+ + + LL EE+
Sbjct: 1101 NKAELAKALLSEEV 1114
Score = 76 (31.8 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 25/71 (35%), Positives = 33/71 (46%)
Query: 221 MRDFH-GGMFCDEPGLGKTITALS--LILKTQGTLADP-----PDGVKIIWCTH--NGDP 270
+R++ G+ D+ GLGKTI L+ LI K QG L P P V W P
Sbjct: 676 LREYQLNGILADDMGLGKTIQTLAHLLIEKQQGRLTKPILIVAPTSVIFNWANEIDKFTP 735
Query: 271 RCGYYDLSGDK 281
+ Y L G+K
Sbjct: 736 QLSYQVLHGNK 746
Score = 58 (25.5 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 51/232 (21%), Positives = 92/232 (39%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW-------DYDVV 664
L++ LIV P+ ++ +W +I + P QL V +K+ D++
Sbjct: 710 LTKPILIVAPTSVIFNWANEIDKFT-P-QLSYQVLHGNKRHEQFGCLEGVENGENQVDII 767
Query: 665 ITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMA-ISLTASNRWLL 723
IT++ ++ + + ++L +LDE H + N KL A ++L A ++ L
Sbjct: 768 ITSYALITKDLAHYTDR---KFYYL--VLDEAHYIK---NTKTKLYQAFLTLKAQHKLCL 819
Query: 724 TGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL-QLLH 782
TG + L FL G Q+ + P E E R +LL Q +
Sbjct: 820 TGTPME----NHLGEFWAQFNFLLPGFLG-GQRQFTKLFRTPIEKHGELERKQLLNQRIK 874
Query: 783 RCMISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNE--LVVTVRRNILMAD 831
++ K + T +P + + L + A Y L + R ++AD
Sbjct: 875 PFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIAD 926
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 137 (53.3 bits), Expect = 8.6e-10, Sum P(4) = 8.6e-10
Identities = 38/130 (29%), Positives = 63/130 (48%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S++I +D F D
Sbjct: 800 LSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLIDEFNTDMDI 859
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G TR + V L +GT
Sbjct: 860 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREVKVIKLISKGT 919
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 920 IEESMLKMNQ 929
Score = 95 (38.5 bits), Expect = 8.6e-10, Sum P(4) = 8.6e-10
Identities = 62/298 (20%), Positives = 124/298 (41%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLA------WDYDVVITTFNR 670
LIVVP+ +D+W ++ P LF + ++ H A D++V++TT+N
Sbjct: 485 LIVVPASTLDNWIREVNLWC-PELNVLFYYVGSQEDRKHLRADISNRVVDFNVIVTTYNC 543
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXX 730
+ R +++++ + DEGH L + ++ + Q + + A +R LLTG
Sbjct: 544 AISSSDDRSLFRKVKLNY--AIFDEGHMLKNMSSV--RYQQLMRINAKHRLLLTGTPVQN 599
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE-AEMEEGRSRLLQLLHRCMISAR 789
+S L ++ + + + ++ + E + E+ R + + + I R
Sbjct: 600 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILRR 659
Query: 790 KTD--LQTIPLCIKEVTFLNFTEEHAGTY----NELVVTVRRNILMADW-NDPSHVESLL 842
D L+ +P + +E+ Y N+L T++ N +D N + +
Sbjct: 660 VKDEVLKQLPPKKDHIELCAMSEKQEQLYCDLLNKLKKTMKGNEKNSDMGNAMMQLRKMA 719
Query: 843 N-PKQWKFRSTTIRNLRLSCCVAGHIKVTDAGED-IQETMDVLVENGLDPLSQEYAFI 898
N P + T + +S + DA D I E M V+ + L L ++Y+ +
Sbjct: 720 NHPLLHRHYYTADKLKTMSKLMLKEPTHCDANPDLIFEDMTVMTDFELHLLCKQYSHV 777
Score = 57 (25.1 bits), Expect = 8.6e-10, Sum P(4) = 8.6e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 450 HGLNGILADEMGLGKTIQAIAFL 472
Score = 40 (19.1 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 19/101 (18%), Positives = 47/101 (46%)
Query: 299 RRRQLSVGKFTPMDDLKCPLLKRARLVDPGDEIEGFSSFSDVDMISPLVASSEPATHLVR 358
R+ + + + + DD L++A ++ G+++ ++ D+ + + + + R
Sbjct: 51 RKDVILISEDSSEDDQPVYQLQKAAHMNNGNQLVDLQEDAEEDIRNAKLQTLKELFPQ-R 109
Query: 359 CTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSS 399
++L Q+ K+ + DE C N + ++ K+R N S
Sbjct: 110 SDQDLLQLVKSTC-SMDEAIAACLKFNDEATASRKRRLNDS 149
Score = 38 (18.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 403 PKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDACHKWRKLLDASV 452
P+R+ L +V ++C E ++ AC + + A K R+L D+ +
Sbjct: 107 PQRSDQDLLQLVKSTCSMDEAIA----ACLKFNDEATASRK-RRLNDSHI 151
Score = 37 (18.1 bits), Expect = 8.6e-10, Sum P(4) = 8.6e-10
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 165 LKLFPHQQAAVEWM--LHR 181
L+L P+Q+ + W+ LH+
Sbjct: 431 LELKPYQKIGLNWLALLHK 449
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 111 (44.1 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 26/120 (21%), Positives = 60/120 (50%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLALLMD 1049
+KV++ S + + ++++ G + + S + + +D F ++ + + LL
Sbjct: 661 EKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSS 720
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+L + + L + W+ + + Q +SR R G P+H+ L GT+EE++ +
Sbjct: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQ 780
Score = 107 (42.7 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 56/206 (27%), Positives = 92/206 (44%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLF-VWTDHKKPSAHSLAWDYDVVITTFNRLS 672
+ TLIV P LV++WK + Q+ + ++ +F V DHK + Y V+I ++ L
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTVDQDHKVEEFTKSPF-YSVLIISYEMLL 414
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
R + V + ++ DEGH L S++ T L ISL+ R +LTG
Sbjct: 415 -----RSLDQIKNVKFDLLICDEGHRLKNSTIKTTTAL---ISLSCEKRIILTGTPVQ-- 464
Query: 732 XXSQLSHLQPMLKFLHEEAYGQ---NQKAWDGGIL---RPF--EAEMEEGRSRLLQL--L 781
+ L ++ F++ G +K ++ I+ +P E E E G R +L L
Sbjct: 465 --NDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEERELGEQRAAELTCL 522
Query: 782 HRCMISARKTDL--QTIPLCIKEVTF 805
I R ++ Q +P I+ V F
Sbjct: 523 TGLFILRRTQEVINQYLPPKIENVVF 548
Score = 64 (27.6 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 226 GGMFCDEPGLGKTITALSLI--LKTQGTLADPP 256
G + DE GLGKT+ +SLI L+ QG P
Sbjct: 321 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKP 353
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 133 (51.9 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 863 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 923 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGT 982
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 983 IEESMLKINQ 992
Score = 100 (40.3 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 28/113 (24%), Positives = 60/113 (53%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ ++ + + ++ + HS +Y+V++TT+N
Sbjct: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAI 608
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ R +++++ + DEGH L + ++ + Q +++ A+NR LLTG
Sbjct: 609 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINANNRLLLTG 657
Score = 57 (25.1 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFL 536
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 246 SNNWEKQESIVL 257
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 133 (51.9 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 863 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 923 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGT 982
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 983 IEESMLKINQ 992
Score = 100 (40.3 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 28/113 (24%), Positives = 60/113 (53%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ ++ + + ++ + HS +Y+V++TT+N
Sbjct: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAI 608
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ R +++++ + DEGH L + ++ + Q +++ A+NR LLTG
Sbjct: 609 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINANNRLLLTG 657
Score = 57 (25.1 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFL 536
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 246 SNNWEKQESIVL 257
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 133 (51.9 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 863 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 923 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGT 982
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 983 IEESMLKINQ 992
Score = 100 (40.3 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 28/113 (24%), Positives = 60/113 (53%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ ++ + + ++ + HS +Y+V++TT+N
Sbjct: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAI 608
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ R +++++ + DEGH L + ++ + Q +++ A+NR LLTG
Sbjct: 609 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINANNRLLLTG 657
Score = 57 (25.1 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFL 536
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 246 SNNWEKQESIVL 257
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 131 (51.2 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 37/130 (28%), Positives = 62/130 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L K D+V++FSQF + ++E L ++ + S +I +D F D
Sbjct: 865 LSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 924
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V L + + ++Q R HR+G T+ + V L +GT
Sbjct: 925 FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGT 984
Query: 1103 VEEQMLEFLQ 1112
+EE ML+ Q
Sbjct: 985 IEESMLKINQ 994
Score = 100 (40.3 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 28/113 (24%), Positives = 60/113 (53%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP----SAHSLAWDYDVVITTFNRLS 672
LIVVP+ +D+W ++ ++ + + ++ + HS +Y+V++TT+N
Sbjct: 551 LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNCAI 610
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ R +++++ + DEGH L + ++ + Q +++ A+NR LLTG
Sbjct: 611 SSSDDRSLFRRLKLNY--AIFDEGHMLKNMGSI--RYQHLMTINANNRLLLTG 659
Score = 57 (25.1 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 225 HG--GMFCDEPGLGKTITALSLI 245
HG G+ DE GLGKTI A++ +
Sbjct: 516 HGLNGILADEMGLGKTIQAIAFL 538
Score = 39 (18.8 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 68 SCDWEKRKSVLL 79
S +WEK++S++L
Sbjct: 248 STNWEKQESIVL 259
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 127 (49.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 53/241 (21%), Positives = 109/241 (45%)
Query: 876 IQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCV--AMDSEKCSLPGCGFL 933
++ T D+L + L P ++ F K +++L A+ + + +L L
Sbjct: 530 LRRTADILADY-LPPKTEYVLFCKPTNTQA-KIYQNVLASPVFQGALGNSESALQLITIL 587
Query: 934 YEM-QSPEILT-RPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNK-AL 990
++ SP +L+ + N P + L L P+ + + + K + L + +
Sbjct: 588 KKLCNSPSLLSLKDANEKPSETIAAILSSLPPNLLRHFSPSCSAKIRVLDQLLHYLRTST 647
Query: 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL--DMFRHDAS-CLALL 1047
+KV++ S + + ++ L+ + F + + K +SL D RH AS C A L
Sbjct: 648 SEKVVLVSNYTSTLDLLANLLSSLSLPFLRLDGST-PAQKRQSLVEDFNRHPASTCFAFL 706
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ A GL+L +R+ L + W+ + + Q ++R HR G H+ + ++G++EE+
Sbjct: 707 LSAKAGGTGLNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKHHCHIYRILLQGSLEEK 766
Query: 1107 M 1107
+
Sbjct: 767 I 767
Score = 100 (40.3 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 54/225 (24%), Positives = 106/225 (47%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-SAHSLAWDYDVVITTFNRL- 671
+ LIV P L+++W+ + ++ + ++ +FV+ D +K + ++ Y ++I + +L
Sbjct: 356 KKALIVCPVTLINNWRREFRKWLGNERIGVFVFDDKRKRLTDFTMGKAYSIMIVGYEKLR 415
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXX 730
S + G + + + + V+ DEGH L + L NK AI SL A+ R +L+G
Sbjct: 416 SVQEGLARGNGV-DI----VIADEGHRLKT---LQNKSGQAIQSLNATKRIILSGTPIQ- 466
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQ---KAWDGGILR---P--FEAEMEEGRSR---LLQ 779
+ L + ++ G + K ++G I+R P E ++E+G +R L +
Sbjct: 467 ---NDLKEFFAAVDLVNPGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRE 523
Query: 780 LLHRCMISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVT 822
L + M+ R D+ +P + V F T A Y ++ +
Sbjct: 524 LTSQFMLR-RTADILADYLPPKTEYVLFCKPTNTQAKIYQNVLAS 567
Score = 55 (24.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 221 MRDFHG--GMFCDEPGLGKTITALSLI 245
MR F+G + D+ GLGKT+ ++L+
Sbjct: 313 MRSFNGEGAILADDMGLGKTLQTITLL 339
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 118 (46.6 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 31/128 (24%), Positives = 61/128 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS- 1042
L+ KA +V+IFSQ + ++E ++ + ++I+++D + S
Sbjct: 462 LKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSE 521
Query: 1043 -CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
+ LL + LG++L+ V L + W+ + Q + RAHR+G + + V
Sbjct: 522 KFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEK 581
Query: 1102 TVEEQMLE 1109
+EE++LE
Sbjct: 582 AIEEKVLE 589
Score = 113 (44.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 55/220 (25%), Positives = 99/220 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD------YDVVITTFNR 670
+++VP +D+W+ + + P +++ V K+ A S+ D +DV+IT+F
Sbjct: 192 IVIVPKSTLDNWRREFAKWT-P-DVNVVVLQGDKEQRA-SIIKDQLYTAKFDVLITSFEM 248
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLLTGXXXX 729
+ R+KS + + W +++DE H + N + L I L S NR L+TG
Sbjct: 249 IL-----REKSALQKFRWEYIVVDEAHRIK---NEDSSLSKIIRLFYSRNRLLITGTPLQ 300
Query: 730 XXXXSQLSHLQPMLKFLHEEAYG---QNQKAWDGGILRPFEAEMEEGR-----SRLLQLL 781
+ L L +L FL + +G Q +A+D + E ++ R S L QLL
Sbjct: 301 ----NNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLL 356
Query: 782 HRCMISARKTDLQTIPLC-IKEVTFLNFTEEHAGTYNELV 820
++ K D++ L I+ ++ T+ Y L+
Sbjct: 357 SPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLL 396
Score = 51 (23.0 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S +
Sbjct: 160 GILADEMGLGKTLQTISFL 178
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 118 (46.6 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 31/128 (24%), Positives = 61/128 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS- 1042
L+ KA +V+IFSQ + ++E ++ + ++I+++D + S
Sbjct: 462 LKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSE 521
Query: 1043 -CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
+ LL + LG++L+ V L + W+ + Q + RAHR+G + + V
Sbjct: 522 KFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEK 581
Query: 1102 TVEEQMLE 1109
+EE++LE
Sbjct: 582 AIEEKVLE 589
Score = 113 (44.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 55/220 (25%), Positives = 99/220 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD------YDVVITTFNR 670
+++VP +D+W+ + + P +++ V K+ A S+ D +DV+IT+F
Sbjct: 192 IVIVPKSTLDNWRREFAKWT-P-DVNVVVLQGDKEQRA-SIIKDQLYTAKFDVLITSFEM 248
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLLTGXXXX 729
+ R+KS + + W +++DE H + N + L I L S NR L+TG
Sbjct: 249 IL-----REKSALQKFRWEYIVVDEAHRIK---NEDSSLSKIIRLFYSRNRLLITGTPLQ 300
Query: 730 XXXXSQLSHLQPMLKFLHEEAYG---QNQKAWDGGILRPFEAEMEEGR-----SRLLQLL 781
+ L L +L FL + +G Q +A+D + E ++ R S L QLL
Sbjct: 301 ----NNLHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLL 356
Query: 782 HRCMISARKTDLQTIPLC-IKEVTFLNFTEEHAGTYNELV 820
++ K D++ L I+ ++ T+ Y L+
Sbjct: 357 SPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLL 396
Score = 51 (23.0 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S +
Sbjct: 160 GILADEMGLGKTLQTISFL 178
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 129 (50.5 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 32/127 (25%), Positives = 66/127 (51%)
Query: 986 SNKALPDKVIIFSQFLEHIHVIEQQL---TVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS 1042
+N +V+IF Q + + ++E+ L T+ + + + + + + +++ F +D S
Sbjct: 1731 TNAVSEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPS 1790
Query: 1043 CLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
LL+ LGL+L+ V +E W+ + Q + RAHR+G + ++V L RG
Sbjct: 1791 IDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRG 1850
Query: 1102 TVEEQML 1108
+EE+++
Sbjct: 1851 CLEEKIM 1857
Score = 103 (41.3 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 38/157 (24%), Positives = 70/157 (44%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEW 675
+LIV PS L HW+ ++ + ++ +V ++ S DVV+T+++
Sbjct: 1421 SLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDIC---- 1476
Query: 676 GRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXXXS 734
R ++++ W +LDEGH + N KL A+ SL + +R +L+G +
Sbjct: 1477 -RNDVDELVKIDWNYCVLDEGHVIK---NARAKLTKAVKSLRSYHRLILSGTPIQ----N 1528
Query: 735 QLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEME 771
+ L + FL G +K + +RP A +
Sbjct: 1529 NVLELWSLFDFLMPGFLG-TEKTFQERFVRPIAASRD 1564
Score = 56 (24.8 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 223 DFHGGMFCDEPGLGKTITALSLI 245
+ HG + CD+ GLGKT+ + ++
Sbjct: 1376 ELHG-ILCDDMGLGKTLQTICIV 1397
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 465 SDPTHQSCGDPEEAWDNCQSITYLPGFHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKK 524
S+ SC ++ D + +L + G + ++ L+ +Y + +M K
Sbjct: 1159 SEVDQASCTVGQDLLDAMSILRFLVAYLDSGLQSEIVSTLPHLLATLQSNYSAVRNMASK 1218
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 375 DEESNICNDRNAKGNSTAKKRA 396
D+ ++ NDR + +S + K A
Sbjct: 1090 DDSDDVSNDRKSSLSSVSDKDA 1111
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 144 (55.7 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 37/142 (26%), Positives = 66/142 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ FL D P L KA KV++FSQ + ++ F+ + M S
Sbjct: 597 TNSGKFLILDRMLPEL---KARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYS 653
Query: 1029 NKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ K++ F D L+ A LG++L+ V + + W+ + Q R HR+G
Sbjct: 654 EREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 713
Query: 1088 ATRPIHVETLAMRGTVEEQMLE 1109
T+P+ V L T++++++E
Sbjct: 714 QTKPVVVYRLVTANTIDQKIVE 735
Score = 79 (32.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 33/131 (25%), Positives = 62/131 (47%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS-SLNLTNKLQMAISLTASN 719
+ VVIT+F E R ++ + +W +++DEGH + + L +L+ A N
Sbjct: 327 HPVVITSF-----EIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR---FNADN 378
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYG--QNQKAW-DGGILRPFEAEM--EEGR 774
+ LLTG + LS L +L FL + + ++ ++W D L ++ +E
Sbjct: 379 KLLLTGTPLQ----NNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE 434
Query: 775 SRLLQLLHRCM 785
+L +LH+ +
Sbjct: 435 QNVLHMLHQIL 445
Score = 50 (22.7 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++ I
Sbjct: 245 GILADEMGLGKTVQCIATI 263
Score = 44 (20.5 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 883 LVENGLDPLSQEYAFIKYNLLNGGNCL 909
L+E +DP++QE+ + + N G L
Sbjct: 577 LIEYPIDPVTQEFKIDEELVTNSGKFL 603
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 124 (48.7 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 39/143 (27%), Positives = 67/143 (46%)
Query: 970 NTNTFL---KQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMH 1026
NT+ L K L L S K D+V++FSQF + ++E L ++ +
Sbjct: 774 NTDVLLDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTP 833
Query: 1027 SSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR 1085
S++I +D F D L+ A LG++L+ V L + + ++Q R HR
Sbjct: 834 MSDRIGLIDQFNTDQDIFVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEGRCHR 893
Query: 1086 MGATRPIHVETLAMRGTVEEQML 1108
+G T+ + V L + ++E+ ML
Sbjct: 894 VGQTKTVKVIKLISKDSIEDTML 916
Score = 96 (38.9 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 64/301 (21%), Positives = 134/301 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSLA---WDYDVVITTFNRLS 672
LI VP+ +D+W ++ ++ ++ + D +K + + +Y+++++T+N
Sbjct: 481 LITVPASTLDNWVRELNLWCPSFKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYNLAI 540
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
R +++ + + DEGH L + +L + MAI+ A R LLTG
Sbjct: 541 GNSSDRSLFCKLKLEY--AVFDEGHLLKNMNSLRYRHLMAIN--AKYRLLLTGTPLQNNL 596
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL--QLLHRCMISAR- 789
+S L ++ + + Q K + ++ E + R R+ +L+ + I R
Sbjct: 597 LELMSLLNFIMPNMFSSSTSQIAKMFS---MKSSEEQSSFERDRITHAKLIMKPFILRRV 653
Query: 790 KTD-LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLL-----N 843
K++ L+ +P ++V F +E Y+ L+ ++ + + + ++V L +
Sbjct: 654 KSEVLKQLPAKEEQVEFCAMSERQQELYSALLHKLKHSS-NGEKRELTNVMMQLRKMSNH 712
Query: 844 PKQWKFRSTTIRNLRLSCCVAGHIKVTDAGED-IQETMDVLVENGLDPLSQEYAFI-KYN 901
P + TT + +S + DA I+E M+VL + L L Q+Y+ + +Y
Sbjct: 713 PLLHRQFYTTEKLKAMSKLMLKEPSHRDADPALIKEDMEVLSDFELHRLCQQYSALHEYQ 772
Query: 902 L 902
L
Sbjct: 773 L 773
Score = 57 (25.1 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI A+S +
Sbjct: 450 GILADEMGLGKTIQAISFL 468
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 21/107 (19%), Positives = 37/107 (34%)
Query: 328 GDEIEGFSSFSDVDMISPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAK 387
G + S SD D S + SS +R + + + DEE I +
Sbjct: 34 GSSLSTAISDSDSDSDSEISGSSMMPVRKLRPRKRKAASSADEYSVSDEEEEIVVKTKRR 93
Query: 388 GNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNET 434
+ R+ S + P + S V++ P + T A ++
Sbjct: 94 PTHSRTTRSTSQQAQPAHQKA--SETVTDIAH-PSPLKTSGMAAADS 137
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 147 (56.8 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 39/136 (28%), Positives = 68/136 (50%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
K+ ++VI+F+Q I ++E L GIK + ++ + K + F D S L
Sbjct: 535 KSPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADSAAARPKIIKKFEDDVSIKVFL 594
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE- 1105
M A LGL+L+ +V + +P W+ + Q +R +RMG T + + L GT+E+
Sbjct: 595 MTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQTNDVAIYRLVSNGTIEDL 654
Query: 1106 QMLEFLQDTDRCRRLL 1121
+ + +Q + RLL
Sbjct: 655 KFFKQVQKENLAARLL 670
Score = 77 (32.2 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 632 IQQHVRPGQLHLFVWTDHKKPSAHSLAW-DYDVVITTFNRLSAEWGRRKKSPMMQVHWLR 690
+ H G+ +V + +K + D +++TT++ + + K P+++ W
Sbjct: 280 LHSHCSTGRQEDYVGSIFRKLQRRRKEYPDGAIILTTYSLFT-----KLKKPIVKHLWQV 334
Query: 691 VMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLH 747
V+LDEGH + N K +A+ L + R++LTG ++LS ++ F+H
Sbjct: 335 VILDEGHYIR---NENTKCSIAMRKLMTTQRFILTGTPFQ----NRLSEFWKLVDFVH 385
Score = 58 (25.5 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGT 251
GG+ DE GLGKTI ++ + Q T
Sbjct: 214 GGILADEMGLGKTIQSVVFLRSIQET 239
Score = 49 (22.3 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 19/76 (25%), Positives = 31/76 (40%)
Query: 744 KFLHEEAYGQNQKAW--DGGILRPFEAEMEEGRSRLLQLL-HRCMISARKTDLQTIPLCI 800
+ + E YG++ K W + G+ +EG L + HR D + I
Sbjct: 170 RMVTSEEYGKSSKPWKVNAGVWNKLHKFQQEGVEWLQKKTDHRS--GGILADEMGLGKTI 227
Query: 801 KEVTFLNFTEEHAGTY 816
+ V FL +E A T+
Sbjct: 228 QSVVFLRSIQETARTH 243
Score = 37 (18.1 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 166 KLFPHQQAAVEWM 178
KL QQ VEW+
Sbjct: 193 KLHKFQQEGVEWL 205
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 144 (55.7 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 39/160 (24%), Positives = 71/160 (44%)
Query: 951 KWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQ 1010
++P+ E + +N+ FL D P L K KV++FSQ + ++
Sbjct: 556 EYPIDPVTQEFKVDEELVTNSGKFLILDRMLPEL---KTRGHKVLLFSQMTRMLDILMDY 612
Query: 1011 LTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEP 1069
F+ + M S + K++ F D L+ A LG++L+ V + +
Sbjct: 613 CHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDS 672
Query: 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
W+ + Q R HR+G TRP+ V L T++++++E
Sbjct: 673 DWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVE 712
Score = 79 (32.9 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 33/131 (25%), Positives = 62/131 (47%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS-SLNLTNKLQMAISLTASN 719
+ VVIT+F E R ++ + +W +++DEGH + + L +L+ A N
Sbjct: 304 HPVVITSF-----EIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKR---FNADN 355
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYG--QNQKAW-DGGILRPFEAEM--EEGR 774
+ LLTG + LS L +L FL + + ++ ++W D L ++ +E
Sbjct: 356 KLLLTGTPLQ----NNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE 411
Query: 775 SRLLQLLHRCM 785
+L +LH+ +
Sbjct: 412 QNVLHMLHQIL 422
Score = 50 (22.7 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++ I
Sbjct: 222 GILADEMGLGKTVQCIATI 240
Score = 39 (18.8 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 282 LTCNNMCLGKRTFSQNARRRQLSVGKFTPMDDLKCPLLKRAR 323
+T + + RT QN + L V + + ++KC L++ +
Sbjct: 308 ITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELK 349
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 116 (45.9 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 44/224 (19%), Positives = 103/224 (45%)
Query: 892 SQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPK 951
SQ F L+ + H++C+ + + C+ P C L+ + + + N +
Sbjct: 461 SQAVRFCLQGLMENSS---HLICIGAL---KKLCNHP-C-LLFSSVKEKECSSAWDENEE 512
Query: 952 WPVPQDLIEL-QPSYR--QWSNTNTFLKQDLYRPNLESNKALP-DKVIIFSQFLEHIHVI 1007
+ +DL+++ P Y ++ + Q L + ++ P +KV++ S + + ++++
Sbjct: 513 RRLYEDLLKVFPPDYNPLMFAEEESGKLQVLSKLLAVIHELRPAEKVVLVSNYTQTLNIL 572
Query: 1008 EQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLALLMDGSASLGLDLSFVTRVF 1065
++ G + S + + +D F ++ + + LL + +GL+L + +
Sbjct: 573 QEVCRRHGYGCTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLI 632
Query: 1066 LMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
L + W+ + + Q +SR R G P+H+ L GT+EE++ +
Sbjct: 633 LYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQ 676
Score = 94 (38.1 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 33/114 (28%), Positives = 54/114 (47%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRPGQLHLF-VWTDHKKPSAHSLAWDYDVVITTFNRLS 672
+ TLIV P LV++W+ + Q+ + ++ +F V DHK Y V+I ++ L
Sbjct: 252 KKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPDHKVEEFTKSPL-YSVLIISYEMLL 310
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTG 725
R + + + ++ DEGH L S++ T L SL R +LTG
Sbjct: 311 -----RSLDQIKNIKFDLLICDEGHRLKNSAIKTTTAL---FSLPCEKRIILTG 356
Score = 64 (27.6 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 226 GGMFCDEPGLGKTITALSLI--LKTQGTLADPP 256
G + DE GLGKT+ +SLI L+ QG P
Sbjct: 217 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKP 249
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 116 (45.9 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 32/125 (25%), Positives = 58/125 (46%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR---HDASCL 1044
KA +V++F Q + + ++E L + +K+ + + + + L+ F D C
Sbjct: 804 KASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCF 863
Query: 1045 ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
LL + LGL+L V + + W+ + Q RAHR+G + + L +VE
Sbjct: 864 -LLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVE 922
Query: 1105 EQMLE 1109
E +LE
Sbjct: 923 EVILE 927
Score = 100 (40.3 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 36/154 (23%), Positives = 72/154 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA-HSL-AWDYDVVITTFNRLSAE 674
L++VP + +W + ++ ++ T +++ S H + ++DV++TT+ E
Sbjct: 523 LVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTY-----E 577
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS--LTASNRWLLTGXXXXXXX 732
+ + KS + + W +++DEGH + N +KL IS NR +LTG
Sbjct: 578 YIIKDKSLLSKHDWAHMIIDEGHRMK---NAQSKLSFTISHYYRTRNRLILTGTPLQ--- 631
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF 766
+ L L +L F+ + + + K ++ PF
Sbjct: 632 -NNLPELWALLNFVLPKIFN-SAKTFEDWFNTPF 663
Score = 60 (26.2 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI ++SLI
Sbjct: 491 GILADEMGLGKTIQSISLI 509
Score = 50 (22.7 bits), Expect = 4.9e-09, Sum P(4) = 4.9e-09
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 1101 GTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTL 1139
G EEQ LE ++D + + E+ +K RE AR R L
Sbjct: 1062 GLTEEQFLEAVEDDN----MSLEDAIKKRRE-ARERRRL 1095
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 134 (52.2 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 30/119 (25%), Positives = 62/119 (52%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCLALLMDG 1050
+V+IFSQ + ++E G +++ + + +++D F + + + +L
Sbjct: 508 RVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTR 567
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V L + W+ ++ Q + RAHR+G +P+ V L TVEE+++E
Sbjct: 568 AGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 626
Score = 97 (39.2 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
+L + LG++L+ V L + W+ ++ Q + RAHR+G +P+ V L TVEE
Sbjct: 563 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 622
Query: 1106 QMLEFLQ-----DT----------DRCRRLLKEELVKPEREGA 1133
+++E + D+ + +L KEE+++ R GA
Sbjct: 623 RIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGA 665
Score = 90 (36.7 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 46/215 (21%), Positives = 98/215 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA---HSLAWDYDVVITTFNRLSA 673
+++VP + +W + ++ V ++ FV + + + ++DV +T++ +
Sbjct: 240 MVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIK 299
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXX 732
E KS + HW +++DE H + N +KL + ++NR LLTG
Sbjct: 300 E-----KSVFKKFHWRYLVIDEAHRIK---NEKSKLSEIVREFKSTNRLLLTGTPLQ--- 348
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR 789
+ L L +L FL + + +D F+ + G +L++ LH + + R
Sbjct: 349 -NNLHELWALLNFLLPDVFNSADD-FDSW----FDTKNCLGDQKLVERLHAVLKPFLLRR 402
Query: 790 -KTDLQ-TIPLCIKEVT-FLNFTEEHAGTYNELVV 821
KTD++ ++P KE+ +L ++ Y ++++
Sbjct: 403 IKTDVEKSLPPK-KEIKIYLGLSKMQREWYTKILM 436
Score = 52 (23.4 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++L+
Sbjct: 208 GILADEMGLGKTLQTIALL 226
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 133 (51.9 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 38/147 (25%), Positives = 66/147 (44%)
Query: 968 WSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHS 1027
W F D P KA +V++F Q + ++++E L + G+K+ + S
Sbjct: 852 WRTAGKFELLDRILPKF---KATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKS 908
Query: 1028 SNKIKSLDMFRH-DASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR 1085
++ L +F D+ L+ A LGL+L V + + W+ + Q RAHR
Sbjct: 909 DDRSDLLKLFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHR 968
Query: 1086 MGATRPIHVETLAMRGTVEEQMLEFLQ 1112
+G + + L +VEE++LE Q
Sbjct: 969 IGQKNEVRILRLITSNSVEEKILERAQ 995
Score = 88 (36.0 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 33/155 (21%), Positives = 72/155 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDH-KKPSAHSLAW-DYDVVITTFNRLSAE 674
L++VP + +W + ++ ++ + +K ++ W ++ V++TT+ +
Sbjct: 590 LVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYII-- 647
Query: 675 WGRRKKSPMM-QVHWLRVMLDEGHTLGSSLNLTNKLQMAIS--LTASNRWLLTGXXXXXX 731
K P++ ++ W +++DEGH + N +KL +S T+ R +LTG
Sbjct: 648 ----KDRPILSKIKWTHMIVDEGHRMK---NTQSKLSSTLSQYYTSRYRLILTGTPLQ-- 698
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF 766
+ L L +L F+ + ++ K++D PF
Sbjct: 699 --NNLPELWALLNFVLPNIF-KSVKSFDEWFNTPF 730
Score = 59 (25.8 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SLI
Sbjct: 558 GILADEMGLGKTIQTISLI 576
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 144 (55.7 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 37/159 (23%), Positives = 77/159 (48%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMD 1049
+V+I++QF ++++E T + + + + +D F + S C LL
Sbjct: 542 RVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCF-LLST 600
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +G++L+ V + + W+ + Q ++R HR+G T + + L +GTVEE+M+E
Sbjct: 601 RAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMME 660
Query: 1110 FLQDTDRCRRLL--KEELVKPEREGARSHRTLHDFAESN 1146
++ L+ K+ L + E + + + F+E N
Sbjct: 661 ITKNKMLLEHLVVGKQHLCQDELDDIIKYGSKELFSEEN 699
Score = 88 (36.0 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 40/150 (26%), Positives = 69/150 (46%)
Query: 645 VWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN 704
+W +H+ + +DV++TT+ + G SP + W +++DEGH L N
Sbjct: 313 IW-EHEFYFSEGRKSKFDVLLTTYEMVHP--GISVLSP---IKWTCMIIDEGHRLK---N 363
Query: 705 LTNKLQMAIS-LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGIL 763
+KL ++S T+ + LLTG + L+ L ++ FL + +G +K D
Sbjct: 364 QKSKLYSSLSQFTSKHIVLLTGTPLQ----NNLNELFALMHFLDADKFGSLEKFQD---- 415
Query: 764 RPFEAEMEEGRSRLLQLLHRCMISARKTDL 793
EE SRL Q+L ++ K D+
Sbjct: 416 ----INKEEQISRLHQMLAPHLLRRLKKDV 441
Score = 45 (20.9 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +++ +
Sbjct: 247 ILADEMGLGKTIQSIAFL 264
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 616 TLIVVPSYLVDHWK 629
TL+VV YLV WK
Sbjct: 72 TLVVVKQYLVK-WK 84
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 128 (50.1 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 29/119 (24%), Positives = 61/119 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCLALLMDG 1050
+V+IFSQ + ++E G ++ + + ++++ F + + + +L
Sbjct: 507 RVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTR 566
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V L + W+ ++ Q + RAHR+G +P+ V L TVEE+++E
Sbjct: 567 AGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 625
Score = 91 (37.1 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 46/215 (21%), Positives = 98/215 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA---HSLAWDYDVVITTFNRLSA 673
+++VP + +W + ++ V ++ FV + + + ++DV +T++ +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK 298
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXX 732
E KS + HW +++DE H + N +KL + ++NR LLTG
Sbjct: 299 E-----KSVFKKFHWRYLVIDEAHRIK---NEKSKLSEIVREFKSTNRLLLTGTPLQ--- 347
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR 789
+ L L +L FL + + +D F+ + G +L++ LH + + R
Sbjct: 348 -NNLHELWALLNFLLPDVFNSADD-FDSW----FDTKNCLGDQKLVERLHAVLKPFLLRR 401
Query: 790 -KTDLQ-TIPLCIKEVT-FLNFTEEHAGTYNELVV 821
KTD++ ++P KE+ +L ++ Y ++++
Sbjct: 402 IKTDVEKSLPPK-KEIKIYLGLSKMQREWYTKILM 435
Score = 52 (23.4 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++L+
Sbjct: 207 GILADEMGLGKTLQTIALL 225
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 130 (50.8 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 38/137 (27%), Positives = 64/137 (46%)
Query: 976 KQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNK---IK 1032
K +L L KA KV+IF Q + ++++E L G+K+ + + ++ +K
Sbjct: 1103 KFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLK 1162
Query: 1033 SLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092
S + D C LL + LGL+L V + + W+ + Q RAHR+G +
Sbjct: 1163 SFNAPDSDYFCF-LLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEV 1221
Query: 1093 HVETLAMRGTVEEQMLE 1109
+ L +VEE +LE
Sbjct: 1222 RILRLITENSVEEMILE 1238
Score = 95 (38.5 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 50/238 (21%), Positives = 110/238 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSL-AWDYDVVITTFNRLSAE 674
L++VP V +W + ++ + + T + +K H + ++ +V+TTF E
Sbjct: 834 LVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTF-----E 888
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT--ASNRWLLTGXXXXXXX 732
+ + K + ++ W+ +++DEGH + N +KL ++ + R +LTG
Sbjct: 889 YVIKDKGLLGRIKWVHMIIDEGHRMK---NANSKLSETLTQNYHSDYRLILTGTPLQ--- 942
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF-------EAEMEEGRSRL-LQLLHRC 784
+ L L +L F+ + + + K++D PF + E+ E + L ++ LH+
Sbjct: 943 -NNLPELWALLNFVLPKIFN-SVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKV 1000
Query: 785 M----ISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSH 837
+ + K D++ +P +++V + + Y +++ R N+L A DP++
Sbjct: 1001 LRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQML---RYNMLYA--GDPAN 1053
Score = 57 (25.1 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 802 GILADEMGLGKTIQTISLL 820
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 130 (50.8 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 38/137 (27%), Positives = 64/137 (46%)
Query: 976 KQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNK---IK 1032
K +L L KA KV+IF Q + ++++E L G+K+ + + ++ +K
Sbjct: 1103 KFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLK 1162
Query: 1033 SLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092
S + D C LL + LGL+L V + + W+ + Q RAHR+G +
Sbjct: 1163 SFNAPDSDYFCF-LLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEV 1221
Query: 1093 HVETLAMRGTVEEQMLE 1109
+ L +VEE +LE
Sbjct: 1222 RILRLITENSVEEMILE 1238
Score = 95 (38.5 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 50/238 (21%), Positives = 110/238 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSL-AWDYDVVITTFNRLSAE 674
L++VP V +W + ++ + + T + +K H + ++ +V+TTF E
Sbjct: 834 LVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVLTTF-----E 888
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT--ASNRWLLTGXXXXXXX 732
+ + K + ++ W+ +++DEGH + N +KL ++ + R +LTG
Sbjct: 889 YVIKDKGLLGRIKWVHMIIDEGHRMK---NANSKLSETLTQNYHSDYRLILTGTPLQ--- 942
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF-------EAEMEEGRSRL-LQLLHRC 784
+ L L +L F+ + + + K++D PF + E+ E + L ++ LH+
Sbjct: 943 -NNLPELWALLNFVLPKIFN-SVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKV 1000
Query: 785 M----ISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSH 837
+ + K D++ +P +++V + + Y +++ R N+L A DP++
Sbjct: 1001 LRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQML---RYNMLYA--GDPAN 1053
Score = 57 (25.1 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 802 GILADEMGLGKTIQTISLL 820
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 121 (47.7 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 45/171 (26%), Positives = 77/171 (45%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLD----MFRH 1039
LE A D+V+ F+QF E ++ L + A + +H K D F+
Sbjct: 842 LEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQS 901
Query: 1040 -DASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLA 1098
D + LL + GL+L+ V ++ W+ ++E Q RA R+G R + V
Sbjct: 902 GDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRRTVQVRKFI 961
Query: 1099 MRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLS 1149
GT+EE++ E +++ ++ L + LV + EG + + D E LS
Sbjct: 962 CTGTLEEKIDEMIEE----KKALAD-LVVTDGEGWLTELSTRDLREVFALS 1007
Score = 107 (42.7 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 59/237 (24%), Positives = 101/237 (42%)
Query: 603 EPLDSVRLYLSRA---TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW 659
E L+SV+ + R TL++ P LV +W + + P +L V+ H H A
Sbjct: 572 ETLESVQRHQDRGVGPTLLLCPMSLVGNWPQEAARFA-P---NLRVYAHHGGARLHGEAL 627
Query: 660 -DY----DVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714
D+ D+V++T+ + R + + W RV+LDE + +SL+ K
Sbjct: 628 RDHLERTDLVVSTYTTAT-----RDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRR-- 680
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR 774
L A++R LTG ++L+ L ++ FL+ G +++ + P E
Sbjct: 681 LRAAHRVALTGTPME----NRLAELWSIMDFLNPGLLGSSERFRTRYAI-PIERHGHTEP 735
Query: 775 SRLLQLLHRCMISAR-KTD---LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNI 827
+ L+ R I R KTD + +P I+ + T E A Y +V + I
Sbjct: 736 AERLRASTRPYILRRLKTDPAIIDDLPEKIEIKQYCQLTTEQASLYQAVVADMMEKI 792
Score = 47 (21.6 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 226 GGMFCDEPGLGKTITALSL 244
G D+ GLGKT+ L+L
Sbjct: 553 GSCLADDMGLGKTVQLLAL 571
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 136 (52.9 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 30/119 (25%), Positives = 64/119 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD-ASC-LALLMDG 1050
KV+IFSQ+ + + +++ + G + + + + + + F + +SC + LL
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ L + W+ M+ Q + R HR+G T+P+HV L+ ++E ++L+
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLK 660
Score = 79 (32.9 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 51/188 (27%), Positives = 82/188 (43%)
Query: 688 WLRVMLDEGHTLGS-SLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFL 746
W V++DEGH L + L +L+ L N+ LLTG + LS L +L F+
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELK---HLKMDNKLLLTGTPLQ----NNLSELWSLLNFI 379
Query: 747 HEEAYGQNQK--AW-DGGILRPFEAEMEEGRSRLLQL---LH---RCMISAR-KTDLQ-T 795
+ + + + +W D EA EE R Q+ LH R I R K D++ +
Sbjct: 380 LPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELS 439
Query: 796 IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHV-ESLLNPKQWKFR-STT 853
+P KE+ +H + E +V N L A H+ E+ + + WK + +
Sbjct: 440 LPRK-KEIIMYATMTDHQKKFQEHLVN---NTLEA------HLGENAIRGQGWKGKLNNL 489
Query: 854 IRNLRLSC 861
+ LR +C
Sbjct: 490 VIQLRKNC 497
Score = 55 (24.4 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 227 GMFCDEPGLGKTITALSLILKTQGTLADPP 256
G+ D+ GLGKTI + + +G D P
Sbjct: 223 GILADQMGLGKTIQTIGFLSHLKGNGLDGP 252
>SGD|S000004237 [details] [associations]
symbol:IRC20 "Putative helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=IGI;IMP] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000004237
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:BK006945
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 HSSP:Q9LRB7
EMBL:U20865 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045003 PIR:S59393
RefSeq:NP_013348.1 ProteinModelPortal:Q06554 SMR:Q06554
DIP:DIP-6373N IntAct:Q06554 MINT:MINT-700566 STRING:Q06554
PaxDb:Q06554 EnsemblFungi:YLR247C GeneID:850949 KEGG:sce:YLR247C
CYGD:YLR247c GeneTree:ENSGT00700000104571 KO:K15710 OMA:HTWGVSG
OrthoDB:EOG4Q2HPM NextBio:967413 Genevestigator:Q06554
GermOnline:YLR247C Uniprot:Q06554
Length = 1556
Score = 140 (54.3 bits), Expect = 6.9e-09, Sum P(4) = 6.9e-09
Identities = 38/127 (29%), Positives = 68/127 (53%)
Query: 985 ESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCL 1044
E A P +VI++SQ E++ VI + L + I+ S +++N ++++ F+ S
Sbjct: 1373 EQENADPPQVILYSQKTEYLKVIGKVLKLYHIEHLACLS--NTANVGETINNFKRQPSVT 1430
Query: 1045 ALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103
LL++ + GL+L +FL++PI + S E Q + R +R+G V +R TV
Sbjct: 1431 CLLLNVKTLGAGLNLINAKHIFLLDPILNNSDELQAMGRNNRIGQDEETFVWNFMIRNTV 1490
Query: 1104 EEQMLEF 1110
EE +L +
Sbjct: 1491 EENILRY 1497
Score = 79 (32.9 bits), Expect = 6.9e-09, Sum P(4) = 6.9e-09
Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 193 YIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKTQGTL 252
YI L TED + Y N + +G P G+ +E GLGKTI LSLIL + L
Sbjct: 358 YI-LTTEDAAHLY-NQYRKERLSGDYPVCAK---GVLAEEMGLGKTIEILSLILLNRRKL 412
Query: 253 AD 254
D
Sbjct: 413 KD 414
Score = 68 (29.0 bits), Expect = 8.2e-08, Sum P(4) = 8.2e-08
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 160 MPCMKLKLFPHQQAAVEWMLHREWNAEVLRH-PLYIDLATEDGFYFYVN 207
+P +K+ L P Q+ +VEWML +E + L P ID E G ++N
Sbjct: 284 IPDLKVNLLPFQRESVEWMLIKEGHGNSLSDTPTVID---EVGLIDFMN 329
Score = 65 (27.9 bits), Expect = 6.9e-09, Sum P(4) = 6.9e-09
Identities = 15/68 (22%), Positives = 34/68 (50%)
Query: 613 SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLF-----VWTDHKK-PSAHSLAWDYDVVIT 666
++ TLI+ P+ ++ W +I+ H + + + + D K A YD+++T
Sbjct: 430 TKTTLIICPNAILKQWLEEIELHANSLKWYTYRGYNEIMKDCKTVDEAVQQLCQYDIIVT 489
Query: 667 TFNRLSAE 674
++N ++ E
Sbjct: 490 SYNIIATE 497
Score = 42 (19.8 bits), Expect = 6.9e-09, Sum P(4) = 6.9e-09
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 681 SPMMQVHWLRVMLDEGHTLGSSLNLTNK 708
SP+ + + R++LDE L SS + K
Sbjct: 521 SPLALMQFYRIILDEVQMLRSSSTYSAK 548
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 152 (58.6 bits), Expect = 7.0e-09, Sum P(3) = 7.0e-09
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 810 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 868
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 869 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 928
Query: 1109 E 1109
E
Sbjct: 929 E 929
Score = 75 (31.5 bits), Expect = 7.0e-09, Sum P(3) = 7.0e-09
Identities = 40/195 (20%), Positives = 84/195 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 539 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 598
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 599 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPLQ---- 652
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 653 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 703
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 704 KKDVEKSLPAKVEQI 718
Score = 47 (21.6 bits), Expect = 7.0e-09, Sum P(3) = 7.0e-09
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 508 ILADEMGLGKTIQTISFL 525
Score = 38 (18.4 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + P++ E W
Sbjct: 109 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW 150
Score = 37 (18.1 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 350 WLGKVSPEDV 359
Score = 37 (18.1 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 709 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 741
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 120 (47.3 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 56/229 (24%), Positives = 107/229 (46%)
Query: 609 RLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT---DHKKPSAHSLAWD-YDVV 664
R+ + L+V P + +W ++ + P +LH+ V+ D ++ +A ++ + + VV
Sbjct: 669 RMNVREPFLVVAPLSTISNWVSEFARW-SP-KLHVIVYKGKQDERRETARTIPRNAFCVV 726
Query: 665 ITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLL 723
IT+F E+ + + + +VHW+ +++DEGH + N +KL + + S NR LL
Sbjct: 727 ITSF-----EYIIKDRKTLGRVHWIYIIIDEGHRIK---NKNSKLSVQLRQYHSRNRLLL 778
Query: 724 TGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAE------MEEGRS-- 775
TG + L L +L FL + + + PF+A+ + E S
Sbjct: 779 TGTPLQ----NDLGELWALLNFLLPTIFN-SADTFQNWFNAPFQAKGKNLINVNEEESLI 833
Query: 776 ---RLLQLLHRCMISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELV 820
RL Q+L ++ K+D+++ +P ++V N + Y LV
Sbjct: 834 IINRLHQVLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLV 882
Score = 110 (43.8 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 39/176 (22%), Positives = 79/176 (44%)
Query: 937 QSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVII 996
Q +I P +W + +DLI + F D + ++K +V+I
Sbjct: 912 QLQKICNHPYLFKDEWDINEDLIR---------TSGKFDTMDQILTKMHASK---HRVLI 959
Query: 997 FSQFLEHIHVIEQQLTVAG---IKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMDGSA 1052
F+Q E I+++E+ ++ ++ G P ++ + ++ R D+ + +L +
Sbjct: 960 FTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLV--VEWNRPDSPFWIFVLSTHAG 1017
Query: 1053 SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
LG++L V + + W+ M+ Q R HR+G T + V L ++EE++L
Sbjct: 1018 GLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIEEKIL 1073
Score = 51 (23.0 bits), Expect = 7.2e-09, Sum P(3) = 7.2e-09
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++ I
Sbjct: 645 GILADEMGLGKTVQTIAFI 663
>ASPGD|ASPL0000017334 [details] [associations]
symbol:AN3811 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_661415.1
ProteinModelPortal:Q5B6L9 EnsemblFungi:CADANIAT00004901
GeneID:2873228 KEGG:ani:AN3811.2 HOGENOM:HOG000183446 OMA:CRIGLTG
OrthoDB:EOG4R539X Uniprot:Q5B6L9
Length = 1016
Score = 132 (51.5 bits), Expect = 7.4e-09, Sum P(3) = 7.4e-09
Identities = 31/115 (26%), Positives = 57/115 (49%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGS 1051
DKV++FS + + +++ + + M + K +D F D L+
Sbjct: 641 DKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGSMTYETRAKVVDEFNSDPRQFVFLISTR 700
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
A +GL+++ +V +++P W+ S + Q RA+R+G TR + V L GT+EE
Sbjct: 701 AGGVGLNITSANKVVIVDPNWNPSHDLQAQDRAYRIGQTRNVEVFRLISAGTIEE 755
Score = 83 (34.3 bits), Expect = 7.4e-09, Sum P(3) = 7.4e-09
Identities = 40/184 (21%), Positives = 76/184 (41%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA-HSL-AWDYDVVITTFNRLSA 673
TLI+ P L+++WK+++ R G H + K H+ + +++ITT++
Sbjct: 315 TLIICPGTLIENWKSEMS---RWGWWHFDAYQGSNKDLVLHAAKSGRVEILITTYSTYL- 370
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ + + V W V+ DE H + + T K I+ A R LTG
Sbjct: 371 ----KNRDAVNMVDWDCVIADECHAIKERSSETTKAMNDIN--ALCRIGLTGTAIQ---- 420
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL 793
++ L +L + + G W + P + + + +Q L R ++A+K
Sbjct: 421 NRYEELWTLLNWTNPGRMGP-VTTWKSHVSEPLK--IGQSHDATVQQLRRARVTAKKLVE 477
Query: 794 QTIP 797
+P
Sbjct: 478 NLLP 481
Score = 59 (25.8 bits), Expect = 7.4e-09, Sum P(3) = 7.4e-09
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 226 GGMFCDEPGLGKTITALSLILKTQGTLADPPD 257
GG+ D+ GLGKT+ ++ + G D D
Sbjct: 265 GGILGDDMGLGKTVQVIAFLTAAYGKTGDERD 296
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 374 YDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVG 409
Y E N R K STA + SS+ K VG
Sbjct: 99 YKEFKNR-KSRKRKRTSTAVAKNKSSKAAAKDTFVG 133
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 122 (48.0 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 30/126 (23%), Positives = 58/126 (46%)
Query: 986 SNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLA 1045
+ K DK ++ S + + I + + G F + M + K +D F AS +
Sbjct: 559 TRKTTDDKFVLVSNYTQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPASTIF 618
Query: 1046 --LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103
LL + GL+L R+ + +P W+ + ++Q ++R R G + + L G++
Sbjct: 619 CFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSI 678
Query: 1104 EEQMLE 1109
EE+M +
Sbjct: 679 EEKMFQ 684
Score = 77 (32.2 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 212 DIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI--LKTQGTLADPPDGVKIIWC 264
D TG + +FHG + DE GLGKT+ +SL+ L Q A P II C
Sbjct: 215 DCVTGI--NIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDACPTVSKSIIVC 267
Score = 72 (30.4 bits), Expect = 7.6e-09, Sum P(3) = 7.6e-09
Identities = 35/149 (23%), Positives = 66/149 (44%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
V+ DEGH L +S NLT Q L + R L++G S ++ F++
Sbjct: 342 VICDEGHRLKNSENLT--YQALSGLKCARRVLISGTPIQNDLLEYFS----LVNFVNPGL 395
Query: 751 YG---QNQKAWDGGILRPFEAEM--------EEGRSRLLQLLHRCMISARKTDLQT--IP 797
G + +K ++ IL+ +A+ EE ++ L+ +C+I R + L T +P
Sbjct: 396 LGTASEFRKKFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIR-RTSALLTKYLP 454
Query: 798 LCIKEVTFLNFTEEHAGTYNELVVTVRRN 826
+ + + + YN+L+ ++N
Sbjct: 455 VKYEHIICCKNSTLQETLYNKLIECEKQN 483
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 140 (54.3 bits), Expect = 8.2e-09, Sum P(4) = 8.2e-09
Identities = 36/142 (25%), Positives = 66/142 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ FL D P L K KV++FSQ + ++ + F+ + M S
Sbjct: 596 TNSGKFLILDRMLPEL---KKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYS 652
Query: 1029 NKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ K++ F D L+ A LG++L+ V + + W+ + Q R HR+G
Sbjct: 653 EREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 712
Query: 1088 ATRPIHVETLAMRGTVEEQMLE 1109
T+P+ V L T++++++E
Sbjct: 713 QTKPVVVYRLVTANTIDQKIVE 734
Score = 79 (32.9 bits), Expect = 8.2e-09, Sum P(4) = 8.2e-09
Identities = 33/131 (25%), Positives = 62/131 (47%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS-SLNLTNKLQMAISLTASN 719
+ VVIT+F E R ++ + +W +++DEGH + + L +L+ A N
Sbjct: 326 HPVVITSF-----EIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR---FNADN 377
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYG--QNQKAW-DGGILRPFEAEM--EEGR 774
+ LLTG + LS L +L FL + + ++ ++W D L ++ +E
Sbjct: 378 KLLLTGTPLQ----NNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE 433
Query: 775 SRLLQLLHRCM 785
+L +LH+ +
Sbjct: 434 QNVLHMLHQIL 444
Score = 50 (22.7 bits), Expect = 8.2e-09, Sum P(4) = 8.2e-09
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++ I
Sbjct: 244 GILADEMGLGKTVQCIATI 262
Score = 44 (20.5 bits), Expect = 8.2e-09, Sum P(4) = 8.2e-09
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 883 LVENGLDPLSQEYAFIKYNLLNGGNCL 909
L+E +DP++QE+ + + N G L
Sbjct: 576 LIEYPIDPVTQEFKIDEELVTNSGKFL 602
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 127 (49.8 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 39/144 (27%), Positives = 63/144 (43%)
Query: 968 WSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHS 1027
W F D P L KA +V+IF Q + + ++E L IK+ + S
Sbjct: 1083 WRVAGKFELLDRILPKL---KATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKS 1139
Query: 1028 SNKIKSLDMFRH-DASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR 1085
+ + L +F D+ L ++ A LGL+L V + + W+ + Q RAHR
Sbjct: 1140 DERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHR 1199
Query: 1086 MGATRPIHVETLAMRGTVEEQMLE 1109
+G + + L +VEE +LE
Sbjct: 1200 IGQKNEVRILRLITTNSVEEVILE 1223
Score = 104 (41.7 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 37/154 (24%), Positives = 75/154 (48%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT--DHKKPSAHSLAWDYDVVITTFNRLSAE 674
L++VP + +W ++ + + F + + K A A ++DVV+TTF E
Sbjct: 820 LVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTF-----E 874
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT--ASNRWLLTGXXXXXXX 732
+ ++++ + +V W+ +++DEGH + N +KL + ++ A R +LTG
Sbjct: 875 YIIKERALLSKVKWVHMIIDEGHRMK---NAQSKLSLTLNTHYHADYRLILTGTPLQ--- 928
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF 766
+ L L +L F+ + + + K++D PF
Sbjct: 929 -NNLPELWALLNFVLPKIFN-SVKSFDEWFNTPF 960
Score = 57 (25.1 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 788 GILADEMGLGKTIQTISLL 806
Score = 39 (18.8 bits), Expect = 9.0e-09, Sum P(4) = 9.0e-09
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 165 LKLFPHQQAAVEWMLHREWNAEVL---RHPLYI 194
L+L P Q+A +L EW+ L HP ++
Sbjct: 536 LQLLPLQKAVRGHVLQFEWHQNSLLTNTHPNFL 568
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 129 (50.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 28/117 (23%), Positives = 60/117 (51%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMDG 1050
+KV+IFS F + + ++E L+ KF + +++ +D F D + +L
Sbjct: 967 EKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIPIFILSTK 1026
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+ G++L V + + ++ + Q RAHR+G T+ +++ TL + ++EE++
Sbjct: 1027 AGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKI 1083
Score = 101 (40.6 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 35/147 (23%), Positives = 72/147 (48%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSL----AWDYDVVITTFNRLS 672
L+VVPS +++W + Q+ ++ + + ++ + A YDV++TT+N L+
Sbjct: 624 LVVVPSSTLENWLREFQKFAPALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYN-LA 682
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
A + S + ++ V+ DEGH L +S + + + + A+ R LLTG
Sbjct: 683 AG-NKYDVSFLKNRNFNVVVYDEGHMLKNSTS--ERFAKLMKIRANFRLLLTGTPLQ--- 736
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWD 759
+ L L +L+F+ + ++++D
Sbjct: 737 -NNLKELMSLLEFIMPNLFISKKESFD 762
Score = 44 (20.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 24/79 (30%), Positives = 34/79 (43%)
Query: 330 EIEGFSSFSDVDMI-SPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKG 388
+I S SD M + L+AS P + L N V N F+ D E N N R +
Sbjct: 291 DIVDLSDLSDTTMHKAQLIASHRPYSSL-----N-AFVNTN-FNDKDTEENASNKRKRRA 343
Query: 389 NSTAKKRANSSRQVPKRNQ 407
++A + S R + K Q
Sbjct: 344 AASANE---SERLLDKITQ 359
Score = 37 (18.1 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 228 MFCDEPGLGKTITALS 243
+ D+ GLGKT +S
Sbjct: 594 ILADDMGLGKTCQVIS 609
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 116 (45.9 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLA 1045
KA +V+ FS + V+E LT+ G K+ + ++ +D F S +
Sbjct: 1086 KATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIF 1145
Query: 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
LL + +G++L V L + W+ ++ Q +RAHR+G + + V +VEE
Sbjct: 1146 LLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEE 1205
Query: 1106 QM 1107
Q+
Sbjct: 1206 QV 1207
Score = 114 (45.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT----DHKKPSAHSLAWD-YDVVITTFNRL 671
L+VVPS ++ W+++I P +H V+ + +K + ++V++TT+ L
Sbjct: 807 LVVVPSSVLPGWQSEINFWA-PS-IHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYL 864
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTGXXXXX 730
+ R K S ++HW +++DEGH + +S L L+ +S S+R LLTG
Sbjct: 865 MNKHDRPKLS---KIHWHYIIIDEGHRIKNASCKLNADLKHYVS---SHRLLLTGTPLQ- 917
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL 778
+ L L +L FL + ++ + +PF++ E L
Sbjct: 918 ---NNLEELWALLNFLLPNIFNSSED-FSQWFNKPFQSNGESSAEEAL 961
Score = 59 (25.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 227 GMFCDEPGLGKTITALSLILKTQGTLAD 254
G+ DE GLGKT+ +SLI T D
Sbjct: 775 GILADEMGLGKTVQVISLICYLMETKND 802
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 128 (50.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 29/119 (24%), Positives = 61/119 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCLALLMDG 1050
+V+IFSQ + ++E G ++ + + ++++ F + + + +L
Sbjct: 507 RVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTR 566
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V L + W+ ++ Q + RAHR+G +P+ V L TVEE+++E
Sbjct: 567 AGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 625
Score = 91 (37.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 46/215 (21%), Positives = 98/215 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA---HSLAWDYDVVITTFNRLSA 673
+++VP + +W + ++ V ++ FV + + + ++DV +T++ +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIK 298
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXX 732
E KS + HW +++DE H + N +KL + ++NR LLTG
Sbjct: 299 E-----KSVFKKFHWRYLVIDEAHRIK---NEKSKLSEIVREFKSTNRLLLTGTPLQ--- 347
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR 789
+ L L +L FL + + +D F+ + G +L++ LH + + R
Sbjct: 348 -NNLHELWALLNFLLPDVFNSADD-FDSW----FDTKNCLGDQKLVERLHAVLKPFLLRR 401
Query: 790 -KTDLQ-TIPLCIKEVT-FLNFTEEHAGTYNELVV 821
KTD++ ++P KE+ +L ++ Y ++++
Sbjct: 402 IKTDVEKSLPPK-KEIKIYLGLSKMQREWYTKILM 435
Score = 52 (23.4 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++L+
Sbjct: 207 GILADEMGLGKTLQTIALL 225
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 135 (52.6 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 35/128 (27%), Positives = 63/128 (49%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS- 1042
L+ KA +V+IFSQ +E ++++E L + + + S + S+D F+ +
Sbjct: 1219 LQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSIKSEVRQASIDRFQDKGAN 1278
Query: 1043 -CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
+ LL + +G++L+ V L + W+ + Q +R HR+G T + V L R
Sbjct: 1279 RFVFLLSTRAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRN 1338
Query: 1102 TVEEQMLE 1109
T EE + E
Sbjct: 1339 TYEEYLFE 1346
Score = 104 (41.7 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 53/236 (22%), Positives = 102/236 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTD-----HKKPSAHSLAWDYDVVITTFNRL 671
L+V P + +W +I + + L + + K H + ++V++TT+ +
Sbjct: 951 LVVAPLSTLGNWHKEILKWTKMKTLVFYGSQETRGFISKYEFKHKDTYLFEVLLTTYETI 1010
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN-LTNKLQMAISLTASNRWLLTGXXXXX 730
++ S ++V W ++LDEGH + + + + +KL+ S+ + +LTG
Sbjct: 1011 MSD-----HSSFVRVPWRALILDEGHRIKNDKSKVLSKLK---SIKTEHSIILTGTPLQ- 1061
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISAR 789
+ + L ML FL + + Q+ D + EE + S+L QLL ++
Sbjct: 1062 ---NDMKELWTMLNFLDPDKFNSCQEFLD-----EYSDLKEESQVSKLHQLLSPYLLRRM 1113
Query: 790 KTDLQ-TIPLCIKEVTFLNFT-EEHAGTYNELVVTVRRNILMADWNDPSHVESLLN 843
K D++ +IP IKE T + TY ++ R L +++ L N
Sbjct: 1114 KEDVELSIP--IKEETVIQVELSSTQKTYYRAILERNREFLSRGIKQKTNLPKLSN 1167
Score = 46 (21.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +++ +
Sbjct: 920 LLADEMGLGKTIQSIAFL 937
Score = 40 (19.1 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 383 DRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNS 417
+ N K N +S++ P R++ G +++NS
Sbjct: 104 NNNGKSNKNNNNNIATSKRPPTRSKSG---IINNS 135
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 142 (55.0 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 36/150 (24%), Positives = 73/150 (48%)
Query: 962 QPSYRQWSNTNTFLKQDLYRPNLES-NKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAG 1020
Q SY + N+ K + LE K +KV++ S + + + +IE + +AG+
Sbjct: 654 QDSYSRSLNSG---KLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCR 710
Query: 1021 MYSPMHSSNKIKSLDMFRHDASCLALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQV 1079
+ + + + + F + + L+ S +GL+L +R+ L + W+ S++ Q
Sbjct: 711 LDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQA 770
Query: 1080 ISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+SR HR G +P + L G ++E++L+
Sbjct: 771 MSRIHRDGQKKPCFIYRLVTTGCIDEKILQ 800
Score = 65 (27.9 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW--------DYDV 663
L + L+V P L+ +WK + + + ++ + + P +A Y V
Sbjct: 385 LCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQV 444
Query: 664 VITTFNRLSAEWGRRKKSPMMQVHWLRVML-DEGHTL--GSSLNLTNKLQMAISLTASNR 720
+I + +L + +K+ H + +++ DEGH L G+S + N L+ SL +
Sbjct: 445 LIIGYEKLLSVSEELEKNK----HLIDMLVCDEGHRLKNGAS-KILNTLK---SLDIRRK 496
Query: 721 WLLTG 725
LLTG
Sbjct: 497 LLLTG 501
Score = 61 (26.5 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 223 DFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWCTHNGDPRCG 273
D G + D+ GLGKT+ +++LI + P K+ C+ +G P G
Sbjct: 338 DISGCLLADDMGLGKTLMSITLIWTL---IRQTPFASKVS-CSQSGIPLTG 384
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 119 (46.9 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHS-SNKIKSLDMFRHDAS-CLALLMDG 1050
+ +IFSQ + + ++E+ L + + + + + K + +F+ D + LL
Sbjct: 493 RTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQ 552
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+G+ L+ RV + +P W+ + + Q + RA+R+G T + + L GTVEE++
Sbjct: 553 VGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKI 609
Score = 99 (39.9 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPG----QLHLFVWTDHKKPSAHSLAWDYDVVITT 667
L+ TL+V+P+ L+ +W + + PG + H T+ + + + V+ITT
Sbjct: 153 LANHTLLVMPTSLIKNWVREFAKWT-PGMRVKEFHGSSKTERNR-NLERIQRKGGVIITT 210
Query: 668 FNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ L + + + + W V+LDE H + +S T K AI A NR LLTG
Sbjct: 211 YQMLINNYEQLGSNGHREFKWDYVILDEAHKIKTSSTKTAKSAHAIP--AKNRVLLTG 266
Score = 56 (24.8 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKTI +S +
Sbjct: 126 GGILADDMGLGKTIQVISFL 145
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 136 (52.9 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 35/142 (24%), Positives = 65/142 (45%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ FL D P L K KV++FSQ + ++ F+ + M +
Sbjct: 596 TNSGKFLILDRMLPEL---KIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYT 652
Query: 1029 NKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ K++ F D L+ A LG++L+ V + + W+ + Q R HR+G
Sbjct: 653 EREKNMHSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 712
Query: 1088 ATRPIHVETLAMRGTVEEQMLE 1109
T+P+ V L T++++++E
Sbjct: 713 QTKPVVVYRLVTANTIDQKIVE 734
Score = 78 (32.5 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 33/131 (25%), Positives = 62/131 (47%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS-SLNLTNKLQMAISLTASN 719
+ VVIT+F E R ++ + +W +++DEGH + + L +L+ A N
Sbjct: 326 HPVVITSF-----EIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKR---FNADN 377
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYG--QNQKAW-DGGILRPFEAEM--EEGR 774
+ LLTG + LS L +L FL + + ++ ++W D L ++ +E
Sbjct: 378 KLLLTGTPLQ----NNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE 433
Query: 775 SRLLQLLHRCM 785
+L +LH+ +
Sbjct: 434 QNVLHMLHQIL 444
Score = 50 (22.7 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++ I
Sbjct: 244 GILADEMGLGKTVQCIATI 262
Score = 44 (20.5 bits), Expect = 2.7e-08, Sum P(4) = 2.7e-08
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 883 LVENGLDPLSQEYAFIKYNLLNGGNCL 909
L+E +DP++QE+ + + N G L
Sbjct: 576 LIEYPIDPVTQEFKIDEELVTNSGKFL 602
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 152 (58.6 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 808 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 866
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 867 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 926
Query: 1109 E 1109
E
Sbjct: 927 E 927
Score = 73 (30.8 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 40/195 (20%), Positives = 83/195 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 537 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 596
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I + +R L+TG
Sbjct: 597 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSHHRLLITGTPLQ---- 650
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 651 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 701
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 702 KKDVEKSLPAKVEQI 716
Score = 47 (21.6 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 506 ILADEMGLGKTIQTISFL 523
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + P++ E W
Sbjct: 110 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW 151
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 351 WLGKVSPEDV 360
Score = 37 (18.1 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 707 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 739
Score = 37 (18.1 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 752 GQNQ-KAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIP 797
GQ Q K + P E E E+G S + + + + R +T+P
Sbjct: 141 GQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVPRRTVP 187
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 144 (55.7 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 33/118 (27%), Positives = 59/118 (50%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGS 1051
DKV+IFSQF + ++E L + G + + ++ + ++ F L+
Sbjct: 770 DKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTR 829
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
A LG++L+ + + + ++ ++Q R HRMG +P+HV L +GTVE ML
Sbjct: 830 AGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGML 887
Score = 82 (33.9 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 29/113 (25%), Positives = 58/113 (51%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSLAW--DY-DVVITTFNRLS 672
LIVVPS +++W + + QL + + D +K H + D+ DV++TT+N ++
Sbjct: 446 LIVVPSSTIENWIGEFHKWCPSIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYNMVT 505
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
++ +K +++ V+ DEGH L + + + + + + + LLTG
Sbjct: 506 SKSDDKKFFKNFSLNY--VIYDEGHMLKNCDS--ERYRGLMKVKGKKKILLTG 554
Score = 41 (19.5 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 231 DEPGLGKTITALSLI 245
DE GLGKTI ++ +
Sbjct: 419 DEMGLGKTIQIVAFL 433
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 119 (46.9 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 31/130 (23%), Positives = 66/130 (50%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVA-GIKFAGMYSPMHSSNKIKSLDMFRHDAS 1042
+E+ K + +IF+Q++ ++++ L G + + + + K ++ F++
Sbjct: 759 IENIKDQNESCLIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQNGTY 818
Query: 1043 CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
+ +L + GL+L+ V + W+ ++E Q RA+R+G R +HV L GT
Sbjct: 819 DIFILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGT 878
Query: 1103 VEEQMLEFLQ 1112
+EE++ E L+
Sbjct: 879 LEEKIDEMLE 888
Score = 99 (39.9 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 48/218 (22%), Positives = 98/218 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKK-PSAHSLAWDYDVVITTFNRLSAEW 675
LIV P+ ++ +W+ + ++ ++ L ++ K S DVV+T++ A+
Sbjct: 504 LIVAPTSVLGNWQKEFERFAPNLRVQLHYGSNRAKGESFKDFLQSADVVLTSY--ALAQL 561
Query: 676 GRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXXXS 734
+ S + W V+LDE + N K A+ +L A+++ LTG +
Sbjct: 562 DEEELSTLC---WDAVILDEAQNIK---NPHTKQSKAVRNLQANHKIALTGTPME----N 611
Query: 735 QLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQ-LLHRCMISARKTDL 793
+L+ L + F++ G + + + P E + +EG+ + +Q + ++ K D
Sbjct: 612 RLAELWSIFDFINHGYLGSLGQ-FQRRFVSPIEKDRDEGKIQQVQRFISPFLLRRTKKD- 669
Query: 794 QTIPLCI----KEVTFLNFTEEHAGTYNELVVTVRRNI 827
QT+ L + ++ + T E A Y +LV +N+
Sbjct: 670 QTVALNLPDKQEQKAYCPLTGEQASLYEQLVQDTLQNV 707
Score = 47 (21.6 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
G + D+ GLGK+I ++ +L
Sbjct: 471 GALLADDMGLGKSIQTITYLL 491
Score = 45 (20.9 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 167 LFPHQQAAVEWMLH 180
L P+QQ +EW+L+
Sbjct: 451 LRPYQQHGIEWLLY 464
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 152 (58.6 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 815 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 873
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 874 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 933
Query: 1109 E 1109
E
Sbjct: 934 E 934
Score = 76 (31.8 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 40/195 (20%), Positives = 84/195 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 544 LIVVPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 603
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 604 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPLQ---- 657
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 658 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 708
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 709 KKDVEKSLPAKVEQI 723
Score = 47 (21.6 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 513 ILADEMGLGKTIQTISFL 530
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQ 437
+R+N SRQ P R + + P++ E W Q
Sbjct: 110 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQ 153
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 358 WLGKVSPEDV 367
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 714 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 746
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 152 (58.6 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 797 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 855
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 856 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 915
Query: 1109 E 1109
E
Sbjct: 916 E 916
Score = 75 (31.5 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 40/195 (20%), Positives = 84/195 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 526 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 585
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 586 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPLQ---- 639
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 640 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 690
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 691 KKDVEKSLPAKVEQI 705
Score = 47 (21.6 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 495 ILADEMGLGKTIQTISFL 512
Score = 38 (18.4 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + P++ E W
Sbjct: 114 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW 155
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(4) = 2.0e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 355 WLGKVSPEDV 364
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 696 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 728
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 137 (53.3 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 36/142 (25%), Positives = 66/142 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ FL D P L K KV++FSQ + ++ + F+ + M S
Sbjct: 579 TNSGKFLILDRMLPEL---KKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYS 635
Query: 1029 NKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ K++ F D L+ A LG++L+ V + + W+ + Q R HR+G
Sbjct: 636 EREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 695
Query: 1088 ATRPIHVETLAMRGTVEEQMLE 1109
T+P+ V L T++++++E
Sbjct: 696 QTKPVVVYRLVTANTIDQKIVE 717
Score = 77 (32.2 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 32/131 (24%), Positives = 62/131 (47%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS-SLNLTNKLQMAISLTASN 719
+ VV+T+F E R ++ + +W +++DEGH + + L +L+ A N
Sbjct: 309 HPVVVTSF-----EIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR---FNADN 360
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYG--QNQKAW-DGGILRPFEAEM--EEGR 774
+ LLTG + LS L +L FL + + ++ ++W D L ++ +E
Sbjct: 361 KLLLTGTPLQ----NNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE 416
Query: 775 SRLLQLLHRCM 785
+L +LH+ +
Sbjct: 417 QNVLHMLHQIL 427
Score = 50 (22.7 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++ I
Sbjct: 227 GILADEMGLGKTVQCIATI 245
Score = 42 (19.8 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 883 LVENGLDPLSQEYAFIKYNLLNGGNCL 909
++E +DP++QE+ + + N G L
Sbjct: 559 MIEYPIDPVTQEFKIDEELVTNSGKFL 585
Score = 40 (19.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 737 SHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRC 784
S L+ ++ + E + + +G I P E+E+ ++ LL +C
Sbjct: 509 SELEKLISQIQPEV-NRERTVVEGNI--PIESEVNLKLRNIMMLLRKC 553
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 146 (56.5 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 37/128 (28%), Positives = 63/128 (49%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L+ K +V+IFSQ + ++E + G K+A + S + S++ + S
Sbjct: 590 LKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSD 649
Query: 1044 LA--LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
L LL + LG+ L+ V L + W+ M+ Q RAHR+G T+P+ V
Sbjct: 650 LFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTEN 709
Query: 1102 TVEEQMLE 1109
++EE+M+E
Sbjct: 710 SMEEKMVE 717
Score = 68 (29.0 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 30/127 (23%), Positives = 59/127 (46%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK-LQMAISLTASN 719
+DV ITT+ E R+KS + W +++DE H + + ++ +K ++M +
Sbjct: 376 FDVCITTY-----EVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRM---FNSQF 427
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE-AEMEEGRSRLL 778
R L+TG + L L +L FL + + + +D + F+ A E + ++
Sbjct: 428 RLLITGTPLQ----NNLHELWSLLNFLLPDVFSSSDD-FD----KWFDLANNTENQQEVI 478
Query: 779 QLLHRCM 785
LH+ +
Sbjct: 479 DKLHKVL 485
Score = 55 (24.4 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 297 GILADEMGLGKTLQTISLL 315
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 152 (58.6 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 790 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 848
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 849 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 908
Query: 1109 E 1109
E
Sbjct: 909 E 909
Score = 75 (31.5 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 40/195 (20%), Positives = 84/195 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 519 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 578
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 579 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPLQ---- 632
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 633 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 683
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 684 KKDVEKSLPAKVEQI 698
Score = 47 (21.6 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 488 ILADEMGLGKTIQTISFL 505
Score = 43 (20.2 bits), Expect = 3.4e-07, Sum P(4) = 3.4e-07
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 455 ATAAWFCSMNSDPTHQSCGDPEEAWDNCQSITYLPGF-HAKGTSDGKKQNVSFFISVLKE 513
+T + N DP+ S DPE+ Q + G+ + T + ++ + LK+
Sbjct: 259 STTVYAVEANGDPS--SDFDPEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKK 316
Query: 514 HYLLINSMTKK--ALTWLAKLSPDEL 537
L N K+ WL K+SP+++
Sbjct: 317 ---LENFKKKEDEIKQWLGKVSPEDV 339
Score = 41 (19.5 bits), Expect = 3.4e-07, Sum P(4) = 3.4e-07
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 348 ASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAK-KRANSSRQVPK 404
+ SE + R R L + +K + D+E + ++ T K +R R VPK
Sbjct: 110 SGSESGSPKRRGQRQLKKQEKRKWELSDDEQEQGSSAESEPEQTVKARRPVPRRTVPK 167
Score = 41 (19.5 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 939 PEILTRPENPNPKWPVPQDLIELQP 963
PE + P P+ VP+ ++ QP
Sbjct: 150 PEQTVKARRPVPRRTVPKPRVKKQP 174
Score = 37 (18.1 bits), Expect = 8.3e-07, Sum P(4) = 8.3e-07
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 394 KRANSSRQVPKR 405
+R+N SRQ P R
Sbjct: 90 RRSNRSRQEPSR 101
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 689 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 721
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 158 (60.7 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 41/148 (27%), Positives = 77/148 (52%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
LE ++ +++IFSQF + + +I ++L I + + S +++ + F
Sbjct: 905 LEECRSTGKRILIFSQFTKMLSIIGRELNRQAIPYFYLDGNTPSQERVELCNRFNEGEGD 964
Query: 1044 LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103
L L+ + GL+L+ V L + W+ ++E+Q RA+RMG + V L GT+
Sbjct: 965 LFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAYRMGQKNTVQVIKLVAHGTI 1024
Query: 1104 EEQMLEFLQDTDRCRRLLKEELVKPERE 1131
EE+M E LQ++ ++ L E+++P E
Sbjct: 1025 EEKMHE-LQES---KKNLIAEVIEPGEE 1048
Score = 55 (24.4 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 33/114 (28%), Positives = 52/114 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHL-FVWTDHKKPSAHSLAWD---YDVVITTFNRLS 672
L+V PS LV +W +++++ P H+ V D + + D +DVVIT++ L
Sbjct: 667 LVVSPSSLVYNWLSELKKFA-P---HIRAVIADGNQAERRKILKDVAEFDVVITSYPLLR 722
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTG 725
R +S H L LDE N T + A+ ++ A R+ LTG
Sbjct: 723 ----RDIRSYARPFHTL--FLDEAQAFK---NPTTQTARAVKTIQAEYRFGLTG 767
Score = 53 (23.7 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ +++ I
Sbjct: 633 GGILADDMGLGKTLQSIAYI 652
Score = 50 (22.7 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 826 NILMADWNDPSHVESLLNPKQWKFRSTTIRNLR 858
N+L D + VES+ NPK+ KF T + LR
Sbjct: 580 NVLSLDESVQDLVESIQNPKKLKF--TVPQTLR 610
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 123 (48.4 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 30/128 (23%), Positives = 59/128 (46%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS- 1042
L+ K +V+IFSQ + ++E ++ + +I+++D + S
Sbjct: 499 LKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSE 558
Query: 1043 -CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
+ LL + LG++L V L + W+ + Q + RAHR+G + +HV
Sbjct: 559 KFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTEN 618
Query: 1102 TVEEQMLE 1109
+EE+++E
Sbjct: 619 AIEEKVIE 626
Score = 94 (38.1 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 46/209 (22%), Positives = 92/209 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHV-RPGQLHLFVWTDHKKPSAHSLAWD--YDVVITTFNRLSA 673
LI+VP +D+W+ + + L L D + ++ + +DV+IT++ +
Sbjct: 237 LIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVI- 295
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLLTGXXXXXXX 732
R+K+ + ++ W +++DE H + N + L I L S NR L+TG
Sbjct: 296 ----REKNALKRLAWQYIVIDEAHRIK---NEQSALSQIIRLFYSKNRLLITGTPLQ--- 345
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTD 792
+ L L +L FL + +G ++ + E + E +L +L+ ++ K D
Sbjct: 346 -NNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKAD 404
Query: 793 LQTIPLC-IKEVTFLNFTEEHAGTYNELV 820
++ L I+ ++ T+ Y L+
Sbjct: 405 VEKSLLPKIETNVYVGMTDMQIQWYKSLL 433
Score = 51 (23.0 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S +
Sbjct: 205 GILADEMGLGKTLQTISFL 223
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 152 (58.6 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 808 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 866
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 867 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 926
Query: 1109 E 1109
E
Sbjct: 927 E 927
Score = 75 (31.5 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 40/195 (20%), Positives = 84/195 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 537 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 596
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 597 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPLQ---- 650
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 651 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 701
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 702 KKDVEKSLPAKVEQI 716
Score = 47 (21.6 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 506 ILADEMGLGKTIQTISFL 523
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQ 437
+R+N SRQ P R + + P++ E W Q
Sbjct: 110 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQ 153
Score = 37 (18.1 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 351 WLGKVSPEDV 360
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 707 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 739
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 152 (58.6 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 810 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 868
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 869 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 928
Query: 1109 E 1109
E
Sbjct: 929 E 929
Score = 75 (31.5 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 40/195 (20%), Positives = 84/195 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 539 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 598
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 599 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPLQ---- 652
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 653 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 703
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 704 KKDVEKSLPAKVEQI 718
Score = 47 (21.6 bits), Expect = 4.5e-08, Sum P(3) = 4.5e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 508 ILADEMGLGKTIQTISFL 525
Score = 38 (18.4 bits), Expect = 2.7e-06, Sum P(4) = 2.7e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + P++ E W
Sbjct: 109 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW 150
Score = 37 (18.1 bits), Expect = 2.7e-06, Sum P(4) = 2.7e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 350 WLGKVSPEDV 359
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 709 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 741
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 122 (48.0 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDAS-CLALLMDG 1050
+ ++FSQ + +++IE+ L K + + H + K +++F+ + + LL
Sbjct: 478 QTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQ 537
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+GL L+ TRV + +P W+ + + Q + R +R+G + V L GTVEE++
Sbjct: 538 VGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 594
Score = 96 (38.9 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 31/112 (27%), Positives = 54/112 (48%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWT--DHKKPSAHSLAWDYDVVITTFNRLSA 673
L+++P+ L++ W + + PG ++ F D + + + + V+ITT+ L
Sbjct: 149 LLIMPTNLINTWVKEFIKWT-PGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLIN 207
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
W + + W V+LDE H + +S T A ++ ASNR LLTG
Sbjct: 208 NWQQLSSFRGQEFVWDYVILDEAHKIKTSS--TKSAICARAIPASNRLLLTG 257
Score = 51 (23.0 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ ++ +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 141 (54.7 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 36/128 (28%), Positives = 71/128 (55%)
Query: 982 PNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DMFRHD 1040
PNL + +V++FSQ ++ + E L G+ + + + S+ K + + D++ D
Sbjct: 816 PNLHQDG---HRVLMFSQSVKMLEDFEILLDHLGLTYLRIDGSISSTKKRQEIIDLYNTD 872
Query: 1041 ASCLALLMDGSA-SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAM 1099
S A +M +LGL+L+ RV +++P W+ +++ Q + RA+R+G + + V L
Sbjct: 873 MSYFAFIMTIQVGALGLNLTSADRVLILDPSWN-TIDNQAVDRAYRIGQKKDVVVYRLMS 931
Query: 1100 RGTVEEQM 1107
GT+EE++
Sbjct: 932 CGTIEEKI 939
Score = 79 (32.9 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 29/128 (22%), Positives = 59/128 (46%)
Query: 602 CEPLDSVRL--YLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVW--TDHKKPSAHSL 657
C L+S+ ++S TL+V+P L++HW + + + +F T + S +
Sbjct: 429 CSFLNSMHSQGHISH-TLLVMPVGLIEHWLKEFNRFNPKYLVRVFHGNNTIERNKSLKRV 487
Query: 658 AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTA 717
+ ++ITT+ + + ++ W V+LDEGH + + +K + A
Sbjct: 488 MNEGGIIITTYGMVVSNVDSMIENGRKSFIWDYVILDEGHKIKETKTQISKTMHRFN--A 545
Query: 718 SNRWLLTG 725
++ +LTG
Sbjct: 546 KHKIILTG 553
Score = 51 (23.0 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 363 LGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRN 406
L + KK++F D+ SN N+ N N+ N++ +N
Sbjct: 622 LRREKKDVFKQNDQPSNNNNNNNNNNNNNNNNNNNNNNNNNNKN 665
Score = 49 (22.3 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 226 GGMFCDEPGLGKTITALSLI--LKTQGTLA 253
GG+ D+ GLGKT+ S + + +QG ++
Sbjct: 413 GGILGDDMGLGKTMQICSFLNSMHSQGHIS 442
Score = 39 (18.8 bits), Expect = 0.00051, Sum P(3) = 0.00050
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 363 LGQVKKNLFHTYDEESNICNDRNAKGNSTAKK 394
+G+ + N + +EE + D++ +T KK
Sbjct: 671 IGEEQNNQENEEEEEVEVSEDKSGNKIATPKK 702
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 152 (58.6 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 777 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 835
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 836 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 895
Query: 1109 E 1109
E
Sbjct: 896 E 896
Score = 73 (30.8 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 40/195 (20%), Positives = 83/195 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 506 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 565
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I + +R L+TG
Sbjct: 566 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSHHRLLITGTPLQ---- 619
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 620 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 670
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 671 KKDVEKSLPAKVEQI 685
Score = 47 (21.6 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 475 ILADEMGLGKTIQTISFL 492
Score = 40 (19.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 528 WLAKLSPDELSEMETTG-LASPILGSYAAGETQGFH 562
WL K+SP+++ LAS + Y E + H
Sbjct: 335 WLGKVSPEDVEYFNCQQELASELNKQYQIVEREIAH 370
Score = 38 (18.4 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + P++ E W
Sbjct: 94 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW 135
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 676 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 708
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 752 GQNQ-KAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIP 797
GQ Q K + P E E E+G S + + + + R +T+P
Sbjct: 125 GQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVPRRTVP 171
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 138 (53.6 bits), Expect = 5.5e-08, Sum P(5) = 5.5e-08
Identities = 32/122 (26%), Positives = 65/122 (53%)
Query: 991 PDKVIIFSQFLEHIHVIEQQLT---VAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALL 1047
P + ++F Q E + +++ ++ + ++F + + ++ + ++ F D S LL
Sbjct: 1685 PHRALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLL 1744
Query: 1048 MDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQ 1106
+ S LGL+L+ V +E W+ + Q + RAHR+G + ++V L RGT+EE+
Sbjct: 1745 LTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEK 1804
Query: 1107 ML 1108
+L
Sbjct: 1805 IL 1806
Score = 92 (37.4 bits), Expect = 5.5e-08, Sum P(5) = 5.5e-08
Identities = 28/111 (25%), Positives = 51/111 (45%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEW 675
+LI+ P L HW+ +++Q+ +V ++ D D+V+T+++
Sbjct: 1381 SLIICPPSLSGHWQQEVKQYAPFLNCVAYVGPPAERSKLQGSLADADIVVTSYDIC---- 1436
Query: 676 GRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASN-RWLLTG 725
R + + W +LDEGH + N K+ MA+ SN R +L+G
Sbjct: 1437 -RNDNDVLRPISWNYCVLDEGHLIK---NPKAKVTMAVKRINSNHRLILSG 1483
Score = 55 (24.4 bits), Expect = 5.5e-08, Sum P(5) = 5.5e-08
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ CD+ GLGKT+ + ++
Sbjct: 1339 GILCDDMGLGKTLQTICIV 1357
Score = 47 (21.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 652 PSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK 708
P+A SLA Y+V+ F +L +R SP ++ +V+ + T +++N +
Sbjct: 897 PNAFSLAKAYEVIGPDFEKL-----KRLLSPAQRITASKVLNETRVTAENAINFAKE 948
Score = 42 (19.8 bits), Expect = 5.5e-08, Sum P(5) = 5.5e-08
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 163 MKLKLFPHQQAAVEWM 178
+K +L P+QQ V W+
Sbjct: 1314 IKAELRPYQQEGVNWL 1329
Score = 37 (18.1 bits), Expect = 5.5e-08, Sum P(5) = 5.5e-08
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 380 ICNDRNAKGNSTAKKRANSSRQVP 403
+ +D + + AK + SR+VP
Sbjct: 1357 VASDHHMRAEDFAKTQRPESRKVP 1380
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 117 (46.2 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 30/120 (25%), Positives = 59/120 (49%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSN---KIKSLDMFRHDASCLALLMD 1049
KV+IF+QF + + ++E L + + + S+N + + + F ++ L
Sbjct: 629 KVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSS 688
Query: 1050 GSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
A LG++L V LM+ W+ M+ Q I R HR+G P+ + ++ ++EE ++
Sbjct: 689 TRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLI 748
Score = 95 (38.5 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 32/132 (24%), Positives = 65/132 (49%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDY--DVVITTFNRLSAE 674
L+VVP + +W +I++ ++ ++ T ++ L ++++T++ E
Sbjct: 227 LVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETTNIILTSY-----E 281
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS 734
R + +++++W +++DEGH L +S L K+ L SNR LLTG +
Sbjct: 282 ISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILK--KLNVSNRLLLTGTPLQ----N 335
Query: 735 QLSHLQPMLKFL 746
L+ L +L F+
Sbjct: 336 NLNELWSLLNFI 347
Score = 51 (23.0 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S +
Sbjct: 196 GILADEMGLGKTLQCISFL 214
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 117 (46.2 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 30/120 (25%), Positives = 59/120 (49%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSN---KIKSLDMFRHDASCLALLMD 1049
KV+IF+QF + + ++E L + + + S+N + + + F ++ L
Sbjct: 629 KVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKVFLSS 688
Query: 1050 GSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
A LG++L V LM+ W+ M+ Q I R HR+G P+ + ++ ++EE ++
Sbjct: 689 TRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFVIKDSIEEVLI 748
Score = 95 (38.5 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 32/132 (24%), Positives = 65/132 (49%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDY--DVVITTFNRLSAE 674
L+VVP + +W +I++ ++ ++ T ++ L ++++T++ E
Sbjct: 227 LVVVPVSTLSNWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETTNIILTSY-----E 281
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS 734
R + +++++W +++DEGH L +S L K+ L SNR LLTG +
Sbjct: 282 ISIRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILK--KLNVSNRLLLTGTPLQ----N 335
Query: 735 QLSHLQPMLKFL 746
L+ L +L F+
Sbjct: 336 NLNELWSLLNFI 347
Score = 51 (23.0 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S +
Sbjct: 196 GILADEMGLGKTLQCISFL 214
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 123 (48.4 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDAS-CLALLMDG 1050
+ ++FSQ ++ +++IE+ L K + + H + K + +F+ + + LL
Sbjct: 481 QTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQ 540
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+GL L+ TRV + +P W+ + + Q + R +R+G + V L GTVEE++
Sbjct: 541 VGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 597
Score = 94 (38.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 33/112 (29%), Positives = 48/112 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYD---VVITTFNRLSA 673
L+++P+ L++ W + + PG K SL VVITT+ L
Sbjct: 150 LLIMPTNLINTWVNEFAKWT-PGMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQMLLN 208
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
W + W V+LDE H + S+ T A ++ ASNR LLTG
Sbjct: 209 NWQQLASFNGQAFVWDYVILDEAHKIKSAS--TKSAVCARAIPASNRLLLTG 258
Score = 51 (23.0 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ ++ +
Sbjct: 118 GGILADDMGLGKTVQIIAFL 137
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 152 (58.6 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 811 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 869
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 870 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 929
Query: 1109 E 1109
E
Sbjct: 930 E 930
Score = 73 (30.8 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 40/195 (20%), Positives = 83/195 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 540 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 599
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I + +R L+TG
Sbjct: 600 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSHHRLLITGTPLQ---- 653
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 654 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 704
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 705 KKDVEKSLPAKVEQI 719
Score = 47 (21.6 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 509 ILADEMGLGKTIQTISFL 526
Score = 38 (18.4 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + P++ E W
Sbjct: 110 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW 151
Score = 37 (18.1 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 351 WLGKVSPEDV 360
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 710 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 742
Score = 37 (18.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 752 GQNQ-KAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIP 797
GQ Q K + P E E E+G S + + + + R +T+P
Sbjct: 141 GQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVPRRTVP 187
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 152 (58.6 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 821 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 879
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 880 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 939
Query: 1109 E 1109
E
Sbjct: 940 E 940
Score = 73 (30.8 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 40/195 (20%), Positives = 83/195 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT-FNRLSAEW 675
LIVVP + W+ + + + +++ + + W + FN L +
Sbjct: 550 LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTY 609
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I + +R L+TG
Sbjct: 610 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT--LIDFKSHHRLLITGTPLQ---- 663
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L F+ E + + W+ FE + +GR Q LH+ + + R
Sbjct: 664 NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQSLHKVLEPFLLRRV 714
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 715 KKDVEKSLPAKVEQI 729
Score = 47 (21.6 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 519 ILADEMGLGKTIQTISFL 536
Score = 38 (18.4 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + P++ E W
Sbjct: 123 RRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKW 164
Score = 37 (18.1 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 528 WLAKLSPDEL 537
WL K+SP+++
Sbjct: 364 WLGKVSPEDV 373
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 720 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 752
Score = 37 (18.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 752 GQNQ-KAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIP 797
GQ Q K + P E E E+G S + + + + R +T+P
Sbjct: 154 GQRQLKKQEKWKREPSEDEQEQGTSAESEAEQKKVKARRPVPRRTVP 200
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 137 (53.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 38/140 (27%), Positives = 73/140 (52%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DMF-----RHDA 1041
K+ +V+I+SQ I ++E+ + K Y + S+KI DM R+D
Sbjct: 1111 KSQGHRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKISERRDMVADFQTRNDI 1166
Query: 1042 SCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
LL + LG++L+ V + W+ ++++Q + RAHR+G T+ + V L +G
Sbjct: 1167 FVF-LLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1225
Query: 1102 TVEEQMLEFLQDTDRCRRLL 1121
T+EE++L+ ++ +R++
Sbjct: 1226 TIEERILQRAKEKSEIQRMV 1245
Score = 79 (32.9 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 46/186 (24%), Positives = 80/186 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTD-H---KKPSAHSLAWDYDVVITTFNRLS 672
LI+ P+ +++W + + V P L W + H KK + ++ + VVIT++ +
Sbjct: 573 LIISPASTLNNWHQEFTRFV-PKFKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQLVV 631
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ +V W ++LDE L SS ++ K+ + NR LLTG
Sbjct: 632 QD-----VKYFQRVKWQYMVLDEAQALKSSSSVRWKI--LLQFQCRNRLLLTGTPIQNTM 684
Query: 733 XS--QLSH-LQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISA 788
L H + P L HEE K + ++ ++E + SRL +L M+
Sbjct: 685 AELWALLHFIMPTLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFMLRR 742
Query: 789 RKTDLQ 794
K D++
Sbjct: 743 IKKDVE 748
Score = 54 (24.1 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 541 GILADEMGLGKTVQSIALL 559
Score = 52 (23.4 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 35/193 (18%), Positives = 81/193 (41%)
Query: 747 HEEAYGQNQKAWDGGILRPF-----EAEMEEGRSRLLQLLHRCMISARKTDL-QTIP--L 798
++ A +NQ + IL+PF + ++E S +++L C +++R+ L Q + +
Sbjct: 719 NKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKI 778
Query: 799 CIKEV--TFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRN 856
I+++ + + T++ T + L+ N++M +H E + W +++
Sbjct: 779 SIEDLLQSSMGSTQQAQNTTSSLM-----NLVMQFRKVCNHPELFERQETWSPFHISLKP 833
Query: 857 LRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLD 916
+S + H ++ + VL+ Q+ F + + N G+C + +D
Sbjct: 834 YEISKFIYRHGQIRVFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGI-NEGSCFSFLRFID 892
Query: 917 CVAMDSEKCSLPG 929
+ L G
Sbjct: 893 VSPAEMANLMLQG 905
Score = 41 (19.5 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 491 FHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALT-WLA 530
FH KG ++G + FI V + N M + L WLA
Sbjct: 874 FHRKGINEGSCFSFLRFIDVSPAE--MANLMLQGLLARWLA 912
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 122 (48.0 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDAS-CLALLMDG 1050
+ ++FSQ + +++IE+ L K + + H + K +++F+ + + LL
Sbjct: 355 QTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQ 414
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+GL L+ TRV + +P W+ + + Q + R +R+G + V L GTVEE++
Sbjct: 415 VGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 471
Score = 96 (38.9 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 31/112 (27%), Positives = 54/112 (48%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWT--DHKKPSAHSLAWDYDVVITTFNRLSA 673
L+++P+ L++ W + + PG ++ F D + + + + V+ITT+ L
Sbjct: 26 LLIMPTNLINTWVKEFIKWT-PGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLIN 84
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
W + + W V+LDE H + +S T A ++ ASNR LLTG
Sbjct: 85 NWQQLSSFRGQEFVWDYVILDEAHKIKTSS--TKSAICARAIPASNRLLLTG 134
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 118 (46.6 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 35/140 (25%), Positives = 64/140 (45%)
Query: 970 NTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSN 1029
++ FL D P L KA +V++FSQF + ++E+ L + F + +
Sbjct: 650 DSGKFLYLDTLLPKL---KAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNV 706
Query: 1030 KIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGA 1088
+ + F D S L+ A +G++L+ + + ++ ++Q R HRMG
Sbjct: 707 RQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQ 766
Query: 1089 TRPIHVETLAMRGTVEEQML 1108
RP+ + L T+EE +L
Sbjct: 767 QRPVTIYRLISESTIEEGIL 786
Score = 90 (36.7 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 34/120 (28%), Positives = 61/120 (50%)
Query: 612 LSRAT-LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSLAWD----YDVVI 665
LS+A LIVVPS +D+W+ +I + + + + D ++ A D +DV++
Sbjct: 336 LSQAAHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLL 395
Query: 666 TTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
TT++ + + RK + ++ + V+ DE H L + T + I++ A R LLTG
Sbjct: 396 TTYHIVGSTPEERKMFRVCKLDY--VIFDEAHMLKNMT--TQRYANLITINARMRILLTG 451
Score = 53 (23.7 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 227 GMFCDEPGLGKTITALSLI--LKTQG 250
G+ DE GLGKTI ++ + LK G
Sbjct: 310 GILADEMGLGKTIQVIAFLAYLKENG 335
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 151 (58.2 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 958 LIELQPSYRQWSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGI 1016
L++L+ + + +N +L Q+L P + K++IFSQF + +IE+ L I
Sbjct: 918 LVKLEQAQKVKNNAKLNWLSQNL--PEMVQEGR---KILIFSQFTSMLILIEELLQSLEI 972
Query: 1017 KFAGMYSPMHSSNKIKS--LDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRS 1074
YS + +++ +D F+ + + L+ + GL+L+ V +P W+ +
Sbjct: 973 D----YSKLTGQTRLRQVQIDKFQEGDTPVFLISLKAGGTGLNLTAADTVIHYDPWWNPA 1028
Query: 1075 MEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112
E Q RAHR+G P+ V L GTVEE++ E Q
Sbjct: 1029 AERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQ 1066
Score = 64 (27.6 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 226 GGMFCDEPGLGKTITALSLILK 247
GG+ D+ GLGKTI L+ +LK
Sbjct: 652 GGILADDMGLGKTIQTLAFLLK 673
Score = 53 (23.7 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTF 668
+LI+ P+ LV +W + + P + + P L+ ++DVV+TT+
Sbjct: 687 SLIICPTSLVGNWAKEAAKFA-PSLTLAVIHGAQRGPLLARLS-EFDVVVTTY 737
Score = 39 (18.8 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 144 RIAATCRHLRCLAASIMPC-MKLKLFPHQQAAVEWM 178
++AA + A P ++ +L P+QQ + W+
Sbjct: 608 QLAAKLEQFTGVVAVTAPTQLQAELRPYQQQGLNWL 643
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 151 (58.2 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 958 LIELQPSYRQWSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGI 1016
L++L+ + + +N +L Q+L P + K++IFSQF + +IE+ L I
Sbjct: 918 LVKLEQAQKVKNNAKLNWLSQNL--PEMVQEGR---KILIFSQFTSMLILIEELLQSLEI 972
Query: 1017 KFAGMYSPMHSSNKIKS--LDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRS 1074
YS + +++ +D F+ + + L+ + GL+L+ V +P W+ +
Sbjct: 973 D----YSKLTGQTRLRQVQIDKFQEGDTPVFLISLKAGGTGLNLTAADTVIHYDPWWNPA 1028
Query: 1075 MEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112
E Q RAHR+G P+ V L GTVEE++ E Q
Sbjct: 1029 AERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQ 1066
Score = 64 (27.6 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 226 GGMFCDEPGLGKTITALSLILK 247
GG+ D+ GLGKTI L+ +LK
Sbjct: 652 GGILADDMGLGKTIQTLAFLLK 673
Score = 53 (23.7 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTF 668
+LI+ P+ LV +W + + P + + P L+ ++DVV+TT+
Sbjct: 687 SLIICPTSLVGNWAKEAAKFA-PSLTLAVIHGAQRGPLLARLS-EFDVVVTTY 737
Score = 39 (18.8 bits), Expect = 9.7e-08, Sum P(4) = 9.7e-08
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 144 RIAATCRHLRCLAASIMPC-MKLKLFPHQQAAVEWM 178
++AA + A P ++ +L P+QQ + W+
Sbjct: 608 QLAAKLEQFTGVVAVTAPTQLQAELRPYQQQGLNWL 643
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 153 (58.9 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 37/136 (27%), Positives = 72/136 (52%)
Query: 993 KVIIFSQFLEHIHVIE---QQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049
++++FSQF++ + ++E + +A +F G S M + I S + + SC LL
Sbjct: 889 RILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCF-LLST 947
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +G++L+ V +++P ++ + Q I+RAHR G + + V L R +VEE++++
Sbjct: 948 RAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQ 1007
Query: 1110 FLQDTDRCRRLLKEEL 1125
Q L+ E L
Sbjct: 1008 NAQKKLVLDHLIVESL 1023
Score = 63 (27.2 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 48/235 (20%), Positives = 103/235 (43%)
Query: 607 SVRLYLSRA--TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVV 664
SV Y + L++VP V +W+ ++++ Q+++ V ++ + SL DY ++
Sbjct: 596 SVLFYRHKCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNR----SLVRDYRLI 651
Query: 665 -------ITTFNR-LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT 716
++T +SA R+ S + + W +++DEG L + + ++ S+
Sbjct: 652 NQKDPKHVSTHVLVISASNVEREISLLRKFQWKVLIVDEGQRLKN--DQSSLFYYLSSVK 709
Query: 717 ASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSR 776
+ + LLTG + + L +L+FL+ K + + + E +
Sbjct: 710 SDFKLLLTGTPLQ----NNVRELFNLLQFLNP------MKINAAELEKRYSIIDTEKVTE 759
Query: 777 LLQLLHRCMISARKTD-LQTIPLCIKEVTFLNFTEEHAGTYNELV---VTVRRNI 827
L Q+L + K++ L P ++ + L+ T G Y ++ +++ RNI
Sbjct: 760 LHQILKPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNI 814
Score = 51 (23.0 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
H + DE GLGKT+ +S I
Sbjct: 575 HPCILADEMGLGKTVQVISFI 595
Score = 47 (21.6 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 960 ELQPSYRQWSNTNTFLKQDLYRPNLES----NKALPDKVIIFSQ---FLEHIHV 1006
EL S+ +++T+ F DL +ES NKA P +++S F++ +HV
Sbjct: 160 ELSLSHLSFNDTSDFGSSDLSSSEIESTENDNKA-PYFSLLYSDGFDFIKFLHV 212
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 123 (48.4 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDAS-CLALLMDG 1050
+ ++FSQ + +++IE+ L K + + H + K + +F+ + + LL
Sbjct: 502 QTLVFSQSRQILNIIERLLKNRHFKILRVDGTVTHLVEREKRIHLFQQNKDYSVFLLTTQ 561
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+GL L+ TRV + +P W+ + + Q + R +R+G I V L GTVEE++
Sbjct: 562 VGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENIVVYRLITCGTVEEKI 618
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 32/114 (28%), Positives = 56/114 (49%)
Query: 617 LIVVPSYLVDHWKTQIQQHVR--PG-QLHLFVWT--DHKKPSAHSLAWDYDVVITTFNRL 671
L+++P+ L+ W I++ V+ PG ++ F + D + + + + V+ITT+ L
Sbjct: 171 LLIMPTNLISTW---IKEFVKWTPGMRVKTFHGSSKDERTRNLNRIQQRNGVIITTYQML 227
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
W + + W V+LDE H + +S T A ++ A NR LLTG
Sbjct: 228 INNWQQLSSLNGQEFVWDYVILDEAHKIKTSS--TKSAICARAVPARNRILLTG 279
Score = 51 (23.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ ++ +
Sbjct: 139 GGILADDMGLGKTVQIIAFL 158
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 152 (58.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 34/121 (28%), Positives = 66/121 (54%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + LT+ F + + + ++LD F D S C LL
Sbjct: 810 NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCF-LLS 868
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE+++
Sbjct: 869 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEII 928
Query: 1109 E 1109
E
Sbjct: 929 E 929
Score = 70 (29.7 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 34/148 (22%), Positives = 69/148 (46%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR 720
++ +ITT+ L + K+ + + W + +DE H L + +L K I +++R
Sbjct: 591 FNALITTYEILLKD-----KAVLGSISWAFLGVDEAHRLKNDDSLLYKT--LIDFKSNHR 643
Query: 721 WLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL 780
L+TG + L L +L F+ E + + W+ FE + +GR Q
Sbjct: 644 LLITGTPLQ----NSLKELWSLLHFIMPEKF----EFWED-----FEEDHGKGRENGYQS 690
Query: 781 LHRCM---ISAR-KTDLQ-TIPLCIKEV 803
LH+ + + R K D++ ++P ++++
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQI 718
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 508 ILADEMGLGKTIQTISFL 525
Score = 41 (19.5 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 6/10 (60%), Positives = 10/10 (100%)
Query: 528 WLAKLSPDEL 537
WLAK+SP+++
Sbjct: 354 WLAKVSPEDV 363
Score = 38 (18.4 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETW 435
+R+N SRQ P R + + E P++ + W
Sbjct: 105 RRSNRSRQEPSRFNIKDEASSESENESPKRRGQKQVKRKKKW 146
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 153 RCLAASIMPCMKLKLFPHQQAAVEWMLHREWNA 185
+ L A + +++++ Q+ +W+L R + A
Sbjct: 709 KSLPAKVEQILRVEMSALQKQYYKWILTRNYKA 741
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 155 (59.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 35/116 (30%), Positives = 66/116 (56%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD-ASCLALLMDGS 1051
+V+IFSQ + +++I+ LT G F + + +++K+++ F+ + + LL
Sbjct: 750 RVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQV 809
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
LGL L+ RV +++P W+ S + Q + RA+R+G T+ + V L TVEE++
Sbjct: 810 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKI 865
Score = 60 (26.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 27/124 (21%), Positives = 55/124 (44%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQL---HLFVWTDHKKPSAHSLAWDYDVVITTF 668
L + L+V P L+ HW ++ V Q+ + T ++ H + +++TT+
Sbjct: 424 LIKRALVVAPKTLLPHWMKELAT-VGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTY 482
Query: 669 ----NRLSAEWGRRKKSPMMQVH---WLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRW 721
N A G + W ++LDEGH + + N T + + + + +S+R
Sbjct: 483 DIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNP-N-TQRAKSLLEIPSSHRI 540
Query: 722 LLTG 725
+++G
Sbjct: 541 IISG 544
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 208 TVSGDIATGTAPTMRD-------FH----GGMFCDEPGLGKTITALSLI 245
T+ G IAT P R+ H GG+ D+ GLGKT+ S +
Sbjct: 368 TLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFL 416
Score = 46 (21.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 167 LFPHQQAAVEWM--LHREWNAEVL 188
L+PHQ+ + W+ LH + +L
Sbjct: 377 LYPHQREGLNWLWSLHTQGKGGIL 400
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 145 (56.1 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 63/269 (23%), Positives = 114/269 (42%)
Query: 862 CVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMD 921
CV H++ + E V +E S EY ++ L+ G L + C
Sbjct: 1031 CVCAHVRQLEMILLFLEVTSVPLERYCADRSAEY---EWRLMRDGGSL---IAKQCFLYG 1084
Query: 922 SEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQ----DLIELQPSYRQWSNTNTFLKQ 977
S + + C + QS L P NP + Q I + +++
Sbjct: 1085 SPELA---CAWAQRSQS--FL--PPNPGGVMALQQRHGWSFIRIPDKESLITDSGKLHTL 1137
Query: 978 DLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DM 1036
DL L+S +V+I+SQ I ++E+ + K Y + S+KI DM
Sbjct: 1138 DLLLTRLKSQG---HRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKISERRDM 1190
Query: 1037 ---FRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092
F+ L+ A LG++L+ V + W+ ++++Q + RAHR+G T+ +
Sbjct: 1191 VADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1250
Query: 1093 HVETLAMRGTVEEQMLEFLQDTDRCRRLL 1121
V L +GT+EE++L+ ++ +R++
Sbjct: 1251 TVYRLICKGTIEERILQRAKEKSEIQRMV 1279
Score = 68 (29.0 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 48/214 (22%), Positives = 84/214 (39%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTD-HKKPSAHSLAWDYDVVITT---FNRLS 672
LI+ P+ +++W + + V P L W + H + W + T F+ +
Sbjct: 572 LIISPASTLNNWHQEFSRFV-PKFKVLPYWGNPHDRKVIRKF-WSQKTLYTQNAPFHVVI 629
Query: 673 AEWGR--RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXX 730
+ + +V W ++LDE L SS ++ K+ + NR LLTG
Sbjct: 630 TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKI--LLQFQCRNRLLLTGTPIQN 687
Query: 731 XXXS--QLSH-LQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMI 786
L H + P L HEE K + ++ ++E + SRL +L M+
Sbjct: 688 TMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFML 745
Query: 787 SARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNEL 819
K D++ + I+ +T+ T Y L
Sbjct: 746 RRIKKDVENELSDKIEILTYCQLTSRQRLLYQAL 779
Score = 54 (24.1 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 540 GILADEMGLGKTVQSIALL 558
Score = 44 (20.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 741 PMLKFLH---EEAYGQNQKAW----DGGILRPFEAEMEEGRSRLL----QLLHRCMISAR 789
PM+K H E+ + +K W I + F+ ++ R+ +L +L H+CM R
Sbjct: 262 PMIKKKHLTIEQLNARRRKVWLTIAKKEIPKAFKQKVS-ARNFVLTNARKLAHQCMREVR 320
Query: 790 KTDLQTIPLCIKE 802
+ +Q C KE
Sbjct: 321 RAAIQAQKNC-KE 332
>UNIPROTKB|G4N1L6 [details] [associations]
symbol:MGG_07487 "ATP-dependent DNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 GO:GO:0005524
EMBL:CM001233 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15710
RefSeq:XP_003711395.1 ProteinModelPortal:G4N1L6
EnsemblFungi:MGG_07487T0 GeneID:2683407 KEGG:mgr:MGG_07487
Uniprot:G4N1L6
Length = 1514
Score = 102 (41.0 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 37/134 (27%), Positives = 61/134 (45%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
K IIFSQ+ V+ T I F+ + H+ ++ F+ +A + A
Sbjct: 1295 KSIIFSQYTGFFGVLSAAFTKYQIGFSSIGE--HNG-----IERFKQEAGIECFFLHARA 1347
Query: 1053 -SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM--LE 1109
S GL+L V L EP+ + ++E Q I+R R+G + V + GTVE + L
Sbjct: 1348 QSSGLNLVNANHVILCEPLLNTALELQAIARVDRIGQKQDTTVWLYMVEGTVEPTIYNLS 1407
Query: 1110 FLQDTDRCRRLLKE 1123
+ + R++KE
Sbjct: 1408 VQRRLEHMDRVMKE 1421
Score = 90 (36.7 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 66/274 (24%), Positives = 118/274 (43%)
Query: 661 YDVVITTFNRLSAEW---------GRRKK-------SPMMQVHWLRVMLDEGHTLGSSLN 704
+DVVI T++ L AE RR++ SP++Q W RV LDE + S ++
Sbjct: 429 HDVVIMTYHELRAEIHFASPPPDRSRRRERKYTRPLSPLVQCLWWRVCLDEAQEVDSGVS 488
Query: 705 LTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILR 764
L A ++ N W +TG + L+ +L FLH E + + W G ++R
Sbjct: 489 KAAIL--ARTIPRVNAWAITGTPIK----DDIMDLKGLLMFLHCEPF-THSSIW-GELVR 540
Query: 765 PFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVR 824
+++ L L H + + DL PL + V + F Y L +
Sbjct: 541 R-KSDFH-AIFNTLALRHSKQLVRDELDL---PLQKRYVINIPFNAVEDQYYQRLFRRLV 595
Query: 825 RNILMADWNDPSHVESLLNPKQWK--FRST--TIRNLRLSCCV-AGH-IKVTDAGEDIQE 878
+N + + +P V+ +PK + R+ T+R L V AG+ + + + +
Sbjct: 596 KNCDLNEQGEPM-VDDW-DPKDYTAVMRNCLDTLRKAALHPHVGAGNQVLPRNPLRTVMQ 653
Query: 879 TMD-VLVENGLDPLSQEYAFIKYNLLNGGNCLRH 911
+D +L+E G ++++ A + N + G L +
Sbjct: 654 VLDHMLLEAGSSLITKQRALL-VNKITQGQLLEN 686
Score = 69 (29.3 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 171 QQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIAT---GTAPTMRD-FHG 226
+ + W + A P + +L G FY + + D+AT + P D G
Sbjct: 267 EAGSAAWATVASYEAPRQVPPGFTELRDMHGNSFYASDLL-DVATRDIDSIPYRVDAIKG 325
Query: 227 GMFCDEPGLGKTITALSLIL 246
G+ +E GLGKT+ + LIL
Sbjct: 326 GILSEEMGLGKTLEMIGLIL 345
Score = 57 (25.1 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 163 MKLKLFPHQQAAVEWMLHRE---WNA 185
+K L+P Q+ AV W+L RE W A
Sbjct: 243 LKAVLYPFQRRAVRWLLGREGVRWEA 268
Score = 52 (23.4 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 615 ATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVW-------TDHKKP-SAHSLA------WD 660
ATLI+ P+ L W ++++H P L + ++ + KK A S +
Sbjct: 371 ATLIITPTTLRAQWVAELKRHA-PS-LSVMIYQGMKQSCVNRKKSIDAQSESAMLEKFMS 428
Query: 661 YDVVITTFNRLSAE 674
+DVVI T++ L AE
Sbjct: 429 HDVVIMTYHELRAE 442
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 101 (40.6 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 50/179 (27%), Positives = 80/179 (44%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLF-VWTDHKKPSAHSLAWDYDVVITTFNR 670
L RA LIV P LV +WK + Q+ + ++ +F V DHK S Y V+I ++
Sbjct: 362 LKRA-LIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSPL-YSVMIISYEM 419
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTGXXXX 729
L R + + + ++ DEGH L SS+ T L +L+ R +LTG
Sbjct: 420 LL-----RSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALT---NLSCERRIILTGTPIQ 471
Query: 730 XXXXSQLSHLQPMLKFLHEEAYGQ---NQKAWDGGILRPFE--AEMEE---GRSRLLQL 780
+ L +++F++ G +K ++ I+R E A EE G R +L
Sbjct: 472 ----NDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAEL 526
Score = 99 (39.9 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 24/118 (20%), Positives = 58/118 (49%)
Query: 994 VIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLALLMDGS 1051
V++ S + + ++V+++ G + + S + + +D F + + + LL +
Sbjct: 672 VVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKA 731
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+GL+L + + L + W+ + + Q ++R R G +H+ L GT+EE++ +
Sbjct: 732 GGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQ 789
Score = 59 (25.8 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 226 GGMFCDEPGLGKTITALSLI--LKTQGTLADPP 256
G + DE GLGKT+ +SL+ L QG P
Sbjct: 328 GAILADEMGLGKTLQCISLVWTLLRQGVYGCKP 360
Score = 44 (20.5 bits), Expect = 1.9e-07, Sum P(4) = 1.9e-07
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 317 PLLKRARLVDPGDEIEGF 334
P+LKRA +V PG ++ +
Sbjct: 360 PVLKRALIVTPGSLVKNW 377
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 101 (40.6 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 50/179 (27%), Positives = 80/179 (44%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLF-VWTDHKKPSAHSLAWDYDVVITTFNR 670
L RA LIV P LV +WK + Q+ + ++ +F V DHK S Y V+I ++
Sbjct: 362 LKRA-LIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSPL-YSVMIISYEM 419
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTGXXXX 729
L R + + + ++ DEGH L SS+ T L +L+ R +LTG
Sbjct: 420 LL-----RSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALT---NLSCERRIILTGTPIQ 471
Query: 730 XXXXSQLSHLQPMLKFLHEEAYGQ---NQKAWDGGILRPFE--AEMEE---GRSRLLQL 780
+ L +++F++ G +K ++ I+R E A EE G R +L
Sbjct: 472 ----NDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAEL 526
Score = 98 (39.6 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 24/120 (20%), Positives = 59/120 (49%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF--RHDASCLALLMD 1049
++V++ S + + ++V+ + G + + S + + +D F + + + LL
Sbjct: 668 ERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSS 727
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ +GL+L + + L + W+ + + Q ++R R G +H+ L GT+EE++ +
Sbjct: 728 KAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQ 787
Score = 59 (25.8 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 226 GGMFCDEPGLGKTITALSLI--LKTQGTLADPP 256
G + DE GLGKT+ +SL+ L QG P
Sbjct: 328 GAILADEMGLGKTLQCISLVWTLLRQGVYGCKP 360
Score = 44 (20.5 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 317 PLLKRARLVDPGDEIEGF 334
P+LKRA +V PG ++ +
Sbjct: 360 PVLKRALIVTPGSLVKNW 377
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 99 (39.9 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 23/97 (23%), Positives = 51/97 (52%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDAS-CLALLMDG 1050
+ ++FSQ + + +IE+ L+ K + + H + + K ++ F+ + + LL
Sbjct: 464 RTLVFSQSRKMLDIIERVLSSRQFKIMRIDGTVTHLTEREKRINAFQSNKDYSVFLLTTQ 523
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+G+ L+ RV + +P W+ + + Q + RA+R+G
Sbjct: 524 VGGVGITLTAANRVVIFDPSWNPATDAQAVDRAYRIG 560
Score = 94 (38.1 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 32/117 (27%), Positives = 51/117 (43%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWTD--HKKPSAHSLAWDYDVVITTF 668
L R L+++P+ LV W + + PG ++ F T + + + +VIT++
Sbjct: 128 LIRHVLLIMPTTLVSSWLAEFARWT-PGLRVKEFHGTSKTERTRNLEKIQRKNGIVITSY 186
Query: 669 NRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
L W + W ++LDE H + N T K AI A +R LLTG
Sbjct: 187 QMLINNWKQLASCHGQDFVWDYIILDEAHKIKCPSNKTTKCVYAIP--AKHRLLLTG 241
Score = 52 (23.4 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKTI ++ +
Sbjct: 101 GGILADDMGLGKTIQIIAFL 120
Score = 47 (21.6 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 163 MKLKLFPHQQAAVEWM--LHRE 182
M KLF HQ+ V ++ LHRE
Sbjct: 76 MHAKLFQHQREGVAFLYRLHRE 97
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 124 (48.7 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMDGS 1051
+ +IF+Q + + V+E + + G + + + + F + L +L S
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRS 1152
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+G++L V + W+ +M++Q R HR+G TR +H+ L T+EE +L+
Sbjct: 1153 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILK 1210
Score = 91 (37.1 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 48/219 (21%), Positives = 92/219 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW----DYDVVITTFNRL- 671
LIVVP+ ++ +W+T+ + P L + K+ W + V ITT+ +
Sbjct: 589 LIVVPTSVMLNWETEFLKWC-PAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVI 647
Query: 672 -SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXX 730
++ +RKK W ++LDE H + + + + Q ++ + R LLTG
Sbjct: 648 QDSKMFKRKK-------WKYLILDEAHLIKNWKS--QRWQTLLNFNSKRRILLTGTPLQ- 697
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQ--KAWD----GGILRPFEAEMEEGRSRLLQLLHRC 784
+ L L ++ FL + +Q K W G++ E +E RL +L
Sbjct: 698 ---NDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPF 754
Query: 785 MISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVT 822
++ K D++ +P + V F ++ Y + + +
Sbjct: 755 LLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIAS 793
Score = 54 (24.1 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI ++L+
Sbjct: 557 GILADEMGLGKTIMTIALL 575
Score = 42 (19.8 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 510 VLKEHYLLINSMTKKALTWLAKLSPDELSEMETTGLASPILGSYAAGE 557
VL +H L+ N KKA+ + + +E +T LA ++ Y G+
Sbjct: 124 VLYKHQLVRNEKKKKAMDKQLEFLLGQ-TERYSTMLAENLVEPYKQGQ 170
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 135 (52.6 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 38/154 (24%), Positives = 71/154 (46%)
Query: 955 PQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVA 1014
P+ L + +W ++ K D L K D+V++FSQF + ++E L
Sbjct: 909 PKSLGKFALKNNEWMDSG---KVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQ 965
Query: 1015 GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDR 1073
+KF + ++ +D F + L+ A G++L+ +V + + ++
Sbjct: 966 HLKFVRLDGTTSVEDRQSIMDTFHENTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNP 1025
Query: 1074 SMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+ Q +RAHR+G TR + V L + T+EEQ+
Sbjct: 1026 QEDVQAENRAHRVGQTREVEVIRLVTKDTIEEQI 1059
Score = 74 (31.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 39/146 (26%), Positives = 63/146 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHK-----KPSAHSLAWDYDVVITTFNRL 671
L+VVPS +++W + Q+ P + + D + D +VVITT+
Sbjct: 616 LVVVPSSTIENWLREFQKFC-PTLSVMPYYADQNVRAQIREQIEGNRDDINVVITTYTIA 674
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN-LTNKLQMAISLTASNRWLLTGXXXXX 730
G+ + + + + DEGH L SS + L KL I + A R LLTG
Sbjct: 675 K---GKVDAHFLRNMDFCACVYDEGHMLKSSTSVLYEKL---IRIRARFRLLLTGTPLQ- 727
Query: 731 XXXSQLSHLQPMLKFLHEEAYGQNQK 756
+ L L +L F+ + + Q +K
Sbjct: 728 ---NNLQELASLLGFILPKVF-QERK 749
Score = 51 (23.0 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 316 CPLLKRARLVDPGDE---IEGFSSFSDVDMISPLVASSEPATHLVR 358
CP KRA L+D D+ G SS D+ M + + +PAT R
Sbjct: 113 CPPAKRAPLIDLEDDGPTYRGGSSDDDIQMSTDI----KPATFTSR 154
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 131 (51.2 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 33/142 (23%), Positives = 69/142 (48%)
Query: 970 NTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSN 1029
N+ + D P ++ + +V+IFSQ + ++E G ++ +
Sbjct: 443 NSGKMVALDKLLPKVQEQGS---RVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEA 499
Query: 1030 KIKSLDMFR--HDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ +++D F + + + +L + LG++L+ V L + W+ ++ Q + RAHR+G
Sbjct: 500 REQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG 559
Query: 1088 ATRPIHVETLAMRGTVEEQMLE 1109
+P+ V L TVEE+++E
Sbjct: 560 QRKPVKVFRLITDNTVEERIVE 581
Score = 76 (31.8 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 30/139 (21%), Positives = 63/139 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSLAW--DYDVVITTFNRLSA 673
+++VP + +W + ++ V + + D + + ++DV +T++ +
Sbjct: 196 MVLVPKSTLHNWMNEFKRWVPTLKAVCLIGNKDERAAFIRDVMMPGEWDVCVTSYEMVI- 254
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKL-QMAISLTASNRWLLTGXXXXXXX 732
R+KS + +W +++DE H + N +KL ++A +NR LLTG
Sbjct: 255 ----REKSVFKKFNWRYLVIDEAHRIK---NEKSKLSEIAREFKTTNRLLLTGTPLQ--- 304
Query: 733 XSQLSHLQPMLKFLHEEAY 751
+ L L +L FL + +
Sbjct: 305 -NNLHELWSLLNFLLPDVF 322
Score = 52 (23.4 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++L+
Sbjct: 164 GILADEMGLGKTLQTIALL 182
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 117 (46.2 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDAS-CLALLMDG 1050
+ ++FSQ +++IE+ L K + + H + K + +F+ + + LL
Sbjct: 480 QTLVFSQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQ 539
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+GL L+ +RV + +P W+ + + Q + R +R+G + V L GTVEE++
Sbjct: 540 VGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 596
Score = 94 (38.1 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWT--DHKKPSAHSLAWDYDVVITTFNRLSA 673
L+++P+ L+ W + + PG ++ F D + + + V+ITT+ L
Sbjct: 149 LLIMPTSLISTWLREFVKWT-PGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQMLIN 207
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
W + + W V+LDE H + SS T A ++ ASNR LLTG
Sbjct: 208 NWQQLSSLNGQEFLWDYVILDEAHKIKSSS--TKSAICARAIPASNRILLTG 257
Score = 51 (23.0 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ ++ +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 118 (46.6 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 41/165 (24%), Positives = 77/165 (46%)
Query: 993 KVIIFSQFLEHIHVIEQQLT---VAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALL 1047
+ +IF Q + + ++E L + + + + + ++ K + F D S CL LL
Sbjct: 1648 RALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCL-LL 1706
Query: 1048 MDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
LGL+L+ V +E W+ + Q + RAHR+G + ++V + +GT+EE++
Sbjct: 1707 TTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKI 1766
Query: 1108 LEFLQDTDRCRRLLKEELVKPEREGARS---HRTLHDFAESNYLS 1149
+ LQ + + + +V + G S H+ L F N S
Sbjct: 1767 MG-LQ---KFKMNIASTVVNQQNSGLASMDTHQLLDLFDPDNVTS 1807
Score = 97 (39.2 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 62/298 (20%), Positives = 125/298 (41%)
Query: 603 EPLDSVRLYLSRA--TLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD 660
E + R SRA +LI+ P L HW+ + Q+ ++ ++ + + D
Sbjct: 1320 EDYEKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSD 1379
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS-LTASN 719
D+++T++ + R + + + + +LDEGH + +S +KL A+ +TA++
Sbjct: 1380 ADIIVTSY-----DVARNDLAVLNKTEYNYCVLDEGHIIKNS---QSKLAKAVKEITANH 1431
Query: 720 RWLLTGXXXXXXXXSQLSHLQPMLK-FLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLL 778
R +LTG S ++ FL E Q + A R + +E + +L
Sbjct: 1432 RLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVL 1491
Query: 779 QL--LHR----CMISARKTD-LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMAD 831
L LH+ M+ K D L +P I + + + Y + ++N++ D
Sbjct: 1492 ALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKK-QKNVVEKD 1550
Query: 832 WNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLD 889
+ + + KQ F++ ++ +R C + ++ + + D L + GLD
Sbjct: 1551 IEN----SEIADGKQHIFQA--LQYMR-KLCNHPALVLSPNHPQLAQVQDYLKQTGLD 1601
Score = 60 (26.2 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 221 MRDFH-GGMFCDEPGLGKTITALSLILKTQ 249
+ +H G+ CD+ GLGKT+ + +I Q
Sbjct: 1286 LNKYHLHGILCDDMGLGKTLQTICIIASDQ 1315
Score = 39 (18.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 2 SVVHQLQSLVNQKCLKIEARVMR 24
SVVH +Q L+ + + ++++
Sbjct: 958 SVVHLIQQLLENNKVNVSGKIVK 980
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 131 (51.2 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 29/119 (24%), Positives = 61/119 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCLALLMDG 1050
+V++FSQ + ++E G ++ + + +++D F + + + +L
Sbjct: 428 RVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTR 487
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V L + W+ ++ Q + RAHR+G +P+ V L TVEE+++E
Sbjct: 488 AGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 546
Score = 74 (31.1 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 35/170 (20%), Positives = 74/170 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAH----SLAWDYDVVITTFNRLS 672
+++VP + +W + ++ V P + + D +A + ++DV +T++ +
Sbjct: 160 MVLVPKSTLHNWMNEFKRWV-PSLRAVCLIGDKDARAAFIRDVMMPGEWDVCVTSYEMVI 218
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 219 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 268
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLH 782
+ L L +L FL + + +D F+ + G +L++ LH
Sbjct: 269 -NNLHELWALLNFLLPDVFNSADD-FDSW----FDTKNCLGDQKLVERLH 312
Score = 52 (23.4 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++L+
Sbjct: 128 GILADEMGLGKTLQTIALL 146
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 117 (46.2 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 35/155 (22%), Positives = 74/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F +S + +L
Sbjct: 503 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSS 562
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 563 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI-- 620
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
F + T + + L +V E++ R H +L + E
Sbjct: 621 FQRQTHK--KALSSCVVDEEQDVER-HFSLGELKE 652
Score = 80 (33.2 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
V+ DEGH L +S N T Q SL R L++G S ++ F++
Sbjct: 282 VICDEGHRLKNSENQT--YQALNSLNTPRRVLISGTPIQNDLLEYFS----LVHFVNSGI 335
Query: 751 YGQNQ---KAWDGGILR-----PFEAEMEEGRSRLLQLL---HRCMISARKTDLQT--IP 797
G Q + ++ IL+ EAE ++G RL +L+ +RC+I R +D+ + +P
Sbjct: 336 LGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIR-RTSDILSKYLP 394
Query: 798 LCIKEVTFLNFTEEHAGTYNELV 820
+ I++V T A Y +
Sbjct: 395 VKIEQVVCCRLTPLQAELYKNFL 417
Score = 56 (24.8 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++L+
Sbjct: 166 HGCIMADEMGLGKTLQCITLM 186
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 117 (46.2 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 35/155 (22%), Positives = 74/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F +S + +L
Sbjct: 503 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSS 562
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 563 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI-- 620
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
F + T + + L +V E++ R H +L + E
Sbjct: 621 FQRQTHK--KALSSCVVDEEQDVER-HFSLGELKE 652
Score = 80 (33.2 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
V+ DEGH L +S N T Q SL R L++G S ++ F++
Sbjct: 282 VICDEGHRLKNSENQT--YQALNSLNTPRRVLISGTPIQNDLLEYFS----LVHFVNSGI 335
Query: 751 YGQNQ---KAWDGGILR-----PFEAEMEEGRSRLLQLL---HRCMISARKTDLQT--IP 797
G Q + ++ IL+ EAE ++G RL +L+ +RC+I R +D+ + +P
Sbjct: 336 LGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIR-RTSDILSKYLP 394
Query: 798 LCIKEVTFLNFTEEHAGTYNELV 820
+ I++V T A Y +
Sbjct: 395 VKIEQVVCCRLTPLQAELYKNFL 417
Score = 56 (24.8 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++L+
Sbjct: 166 HGCIMADEMGLGKTLQCITLM 186
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 117 (46.2 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 35/155 (22%), Positives = 74/155 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F +S + +L
Sbjct: 512 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSS 571
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 572 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI-- 629
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
F + T + + L +V E++ R H +L + E
Sbjct: 630 FQRQTHK--KALSSCVVDEEQDVER-HFSLGELKE 661
Score = 80 (33.2 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
V+ DEGH L +S N T Q SL R L++G S ++ F++
Sbjct: 291 VICDEGHRLKNSENQT--YQALNSLNTPRRVLISGTPIQNDLLEYFS----LVHFVNSGI 344
Query: 751 YGQNQ---KAWDGGILR-----PFEAEMEEGRSRLLQLL---HRCMISARKTDLQT--IP 797
G Q + ++ IL+ EAE ++G RL +L+ +RC+I R +D+ + +P
Sbjct: 345 LGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCLIR-RTSDILSKYLP 403
Query: 798 LCIKEVTFLNFTEEHAGTYNELV 820
+ I++V T A Y +
Sbjct: 404 VKIEQVVCCRLTPLQAELYKNFL 426
Score = 56 (24.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++L+
Sbjct: 175 HGCIMADEMGLGKTLQCITLM 195
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 119 (46.9 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 38/168 (22%), Positives = 79/168 (47%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ V + + M + K ++ F +S + +L
Sbjct: 514 DKVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKI-- 631
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTN 1157
F + + + + L +V E++ R H +L + E L S T+
Sbjct: 632 FQRQSHK--KALSSCVVDEEQDVER-HFSLGELKELFTLDEASLSDTH 676
Score = 78 (32.5 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 38/143 (26%), Positives = 65/143 (45%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
V+ DEGH L +S N T Q SL S R L++G S ++ F++
Sbjct: 293 VICDEGHRLKNSENQT--YQALDSLNTSRRVLISGTPIQNDLLEYFS----LVHFVNSGI 346
Query: 751 YG---QNQKAWDGGILRP-----FEAEMEEGRSRLLQLL---HRCMISARKTDLQT--IP 797
G + +K ++ IL+ EA+ + G RL +L+ +RC+I R +D+ + +P
Sbjct: 347 LGTAHEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIR-RTSDILSKYLP 405
Query: 798 LCIKEVTFLNFTEEHAGTYNELV 820
+ I++V T Y +
Sbjct: 406 VKIEQVVCCRLTPLQTELYKRFL 428
Score = 56 (24.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++L+
Sbjct: 177 HGCIMADEMGLGKTLQCITLM 197
>ZFIN|ZDB-GENE-060712-1 [details] [associations]
symbol:zranb3 "zinc finger, RAN-binding domain
containing 3" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060712-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 HOVERGEN:HBG054110
EMBL:BC078216 IPI:IPI00496409 UniGene:Dr.132615
HOGENOM:HOG000147805 InParanoid:Q6DC67 Uniprot:Q6DC67
Length = 541
Score = 126 (49.4 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 45/185 (24%), Positives = 85/185 (45%)
Query: 965 YRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSP 1024
Y+Q + +D + LES + K ++F+ L + + + A + +
Sbjct: 312 YKQTAVAKAGAVKDYIKMMLESEQL---KFLVFAHHLSMLQACTEAVIEAKAGYIRIDGS 368
Query: 1025 MHSSNKIKSLDMFRHDASC-LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRA 1083
+ S+ +I+ + F++D +A+L +A GL + + V E W+ +Q RA
Sbjct: 369 VPSAERIQLVHRFQNDPDTRVAVLSIQAAGQGLTFTAASHVVFAELYWNPGHIKQAEDRA 428
Query: 1084 HRMGATRPIHVETLAMRGTVEEQMLEFL--QDTDRCRRLL-KEELVKPEREGARSHRTLH 1140
HR+G T +H+ L +GT + M L ++T L K+E +K E EG +
Sbjct: 429 HRIGQTATVHIHYLIAKGTFDTVMWAMLNRKETVTGSALNGKKEYLKAE-EGDQEKWDFL 487
Query: 1141 DFAES 1145
+FA++
Sbjct: 488 NFAQA 492
Score = 62 (26.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVR---PGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSA 673
LIVVPS L W ++++ + P ++L K S++ V I + L+
Sbjct: 80 LIVVPSSLKYPWIEELEKWIPELDPRDINLV----ESKTDTMSISTS-KVTILGYGLLTT 134
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
+ R + + + V++DE H L S +K+ + I +A LLTG
Sbjct: 135 D-ARALLEALNKQRFAVVLVDESHYLKSRNAARSKILVPIIQSAKRAILLTG 185
Score = 59 (25.8 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 228 MFCDEPGLGKTITALSL--ILKTQGTLADP-PDGVKIIW 263
M DE GLGKTI A+S+ I K + L P +K W
Sbjct: 53 MIADEMGLGKTIQAISVAYIFKQEWPLLIVVPSSLKYPW 91
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 138 (53.6 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 36/142 (25%), Positives = 66/142 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ FL D P L K KV++FSQ + ++ + F+ + M S
Sbjct: 252 TNSGKFLILDRMLPEL---KKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYS 308
Query: 1029 NKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ K++ F D L+ A LG++L+ V + + W+ + Q R HR+G
Sbjct: 309 EREKNIYSFNTDPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 368
Query: 1088 ATRPIHVETLAMRGTVEEQMLE 1109
T+P+ V L T++++++E
Sbjct: 369 QTKPVVVYRLVTANTIDQKIVE 390
Score = 63 (27.2 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 687 HWLRVMLDEGHTLGS-SLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKF 745
+W +++DEGH + + L +L+ A N+ LLTG + LS L +L F
Sbjct: 3 YWKYLIVDEGHRIKNMKCRLIRELKR---FNADNKLLLTGTPLQ----NNLSELWSLLNF 55
Query: 746 LHEEAYG--QNQKAW-DGGILRPFEAEM--EEGRSRLLQLLHRCM 785
L + + ++ ++W D L ++ +E +L +LH+ +
Sbjct: 56 LLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQIL 100
Score = 43 (20.2 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 19/92 (20%), Positives = 48/92 (52%)
Query: 824 RRNILMADWND-PSHVESLLN---PKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQET 879
R++I ++ + PS +E L++ P+ + R+ N+ + V ++K+ + +++
Sbjct: 169 RKSINYSELDQFPSELEKLISQIQPEVKRERTVVEGNIPIESEV--NLKLQNIMMLLRKC 226
Query: 880 MD--VLVENGLDPLSQEYAFIKYNLLNGGNCL 909
+ ++E +DP++QE+ + + N G L
Sbjct: 227 CNHPYMIEYPIDPVTQEFKIDEELVTNSGKFL 258
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 737 SHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRC 784
S L+ ++ + E + + +G I P E+E+ ++ LL +C
Sbjct: 182 SELEKLISQIQPEVK-RERTVVEGNI--PIESEVNLKLQNIMMLLRKC 226
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 131 (51.2 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 27/130 (20%), Positives = 66/130 (50%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
+++I+ Q + + E+ L K+ + ++ + + ++ + ++ A
Sbjct: 1254 RILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREMVQAWQTNPEIFIFMLSTRA 1313
Query: 1053 S-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111
LGL+L+ V + W+ +++ Q + RAHR+G T+ + V L R T+E+++LE
Sbjct: 1314 GGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILERA 1373
Query: 1112 QDTDRCRRLL 1121
++ + ++L+
Sbjct: 1374 KEKEEIQKLV 1383
Score = 82 (33.9 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 57/244 (23%), Positives = 103/244 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD-----YD------VVI 665
L+V P+ + +W+ +I + V P L W + K WD YD V++
Sbjct: 725 LVVTPASTLHNWQQEITKFV-PEFKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPFHVLV 783
Query: 666 TTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
T++ + A+ +K + W ++LDE + SS + ++ + ++LT NR LLTG
Sbjct: 784 TSYQLIVADIAYFQK-----MKWQYMILDEAQAIKSSSS--SRWKSLLNLTCRNRLLLTG 836
Query: 726 XXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRS-------RLL 778
+ + L +L F+ + + + D + E+ + S RL
Sbjct: 837 TPIQ----NSMQELWALLHFIMPSIFDSHDEFSDW-FAKDIESHAQSNTSLDEQQLRRLH 891
Query: 779 QLLHRCMISARKTDLQTIPLCIK-EV-TFLNFTEEHAGTYNELVVTVRRNILMADWNDPS 836
+L M+ K ++Q+ L K E+ + + T Y +L R I M+D D
Sbjct: 892 MILKPFMLRRIKKNVQS-ELGDKVEIDVYCDLTTRQKKLYQQL----RSQISMSD-TDLL 945
Query: 837 HVES 840
+ES
Sbjct: 946 ELES 949
Score = 54 (24.1 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++S++
Sbjct: 693 GILADEMGLGKTVQSISVL 711
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(4) = 1.2e-05
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 500 KKQNVSFFISVLKEHYLLINSMT 522
KK S S+L E Y NS T
Sbjct: 116 KKDTNSIIASILPESYQFDNSYT 138
Score = 38 (18.4 bits), Expect = 5.2e-07, Sum P(4) = 5.2e-07
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 932 FLYEMQSPEILTRPENPNPKWPVPQDLIE--LQPSYRQWSNTNTFLKQDLYRP 982
FL E ++ EN ++ +P+ + + L P+Y + + + + K +Y P
Sbjct: 995 FLRETNELDVNYSTENI-VQYDLPRLIYDELLTPNYNKSTRDSIYSKFSIYNP 1046
>WB|WBGene00013792 [details] [associations]
symbol:Y116A8C.13 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0033554 "cellular response to stress" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0033554 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
GeneTree:ENSGT00700000105778 EMBL:AL117204 GeneID:190999
KEGG:cel:CELE_Y116A8C.13 CTD:190999 PIR:T31515
RefSeq:NP_001255913.1 ProteinModelPortal:Q9U2S8 SMR:Q9U2S8
PaxDb:Q9U2S8 EnsemblMetazoa:Y116A8C.13a UCSC:Y116A8C.13
WormBase:Y116A8C.13a HOGENOM:HOG000015986 InParanoid:Q9U2S8
OMA:KICNHPS NextBio:947616 ArrayExpress:Q9U2S8 Uniprot:Q9U2S8
Length = 833
Score = 135 (52.6 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 34/124 (27%), Positives = 63/124 (50%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR-H-DASCLA 1045
+ L + +I S ++E + +I+Q K + ++ K + F H D S +
Sbjct: 530 RLLQECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDHRDPSNIF 589
Query: 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
LL + +GL+L +R+ L + W+ + ++Q ++R R G RP H+ L GT+EE
Sbjct: 590 LLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEE 649
Query: 1106 QMLE 1109
+ML+
Sbjct: 650 KMLQ 653
Score = 78 (32.5 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLA-WDYDVVITTFNR 670
L+ + LI+VPS LV++WK + + R + + +A+ + + + + +
Sbjct: 265 LANSCLIIVPSSLVNNWKAEFDKWWRLMRFPAVIAL-----TANDITTYQSTIKLMPYLV 319
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTG 725
+S + +R + + + ++ DEGH L NL KL+ + SL R +LTG
Sbjct: 320 ISYDLAQRHVEKLKIIRFDVMVCDEGHKLK---NLDGKLRKTLLSLEIPRRLILTG 372
Score = 39 (18.8 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 226 GGMFCDEPGLGKTITALS 243
G + D+ GLGK++ ++
Sbjct: 233 GAILADDMGLGKSLQTMA 250
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 117 (46.2 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 37/168 (22%), Positives = 78/168 (46%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F + S + +L
Sbjct: 514 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSS 573
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI-- 631
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTN 1157
F + + + + L +V E++ R H +L + E L S T+
Sbjct: 632 FQRQSHK--KALSSCVVDEEQDVER-HFSLGELKELFTLDEASLSDTH 676
Score = 75 (31.5 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 38/139 (27%), Positives = 57/139 (41%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLS--HL--QPMLKFL 746
V+ DEGH L +S N T Q SL S R L++G S H +L
Sbjct: 293 VICDEGHRLKNSENQT--YQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA 350
Query: 747 HEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL---LHRCMISARKTDLQT--IPLCIK 801
HE G EA+ + G RL +L ++RC+I R +D+ + +P+ I+
Sbjct: 351 HEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIR-RTSDILSKYLPVKIE 409
Query: 802 EVTFLNFTEEHAGTYNELV 820
+V T Y +
Sbjct: 410 QVVCCRLTPLQTELYKRFL 428
Score = 59 (25.8 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++LI
Sbjct: 177 HGCIMADEMGLGKTLQCITLI 197
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 157 (60.3 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 41/134 (30%), Positives = 74/134 (55%)
Query: 978 DLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMF 1037
+L P L+ A +V++FSQFLE++ V+E L G+ + M S K + +D +
Sbjct: 928 ELMLPKLQ---ARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLEKQRMIDDY 984
Query: 1038 RHDAS-CLALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVE 1095
+ S A L+ S +G++L+ V +M+P ++ + Q +SRAHR+G + V
Sbjct: 985 NAENSPYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKNKVLVF 1044
Query: 1096 TLAMRGTVEEQMLE 1109
L +RG+ EE++++
Sbjct: 1045 QLMIRGSAEEKIMQ 1058
Score = 52 (23.4 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTD--HKKPSAHSL--AWDYD----VVITTF 668
LIVVP+ +W+ +++ V + + + K H + D D VVIT++
Sbjct: 658 LIVVPNSTCPNWRKELKTWVPSLRAVTYYGSSLARKMAQEHEMFIRGDPDLRCHVVITSY 717
Query: 669 NRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701
+ + R+ S ++ W +++DEG L S
Sbjct: 718 ETMVDDSCRKVLS---RIPWAGLIVDEGQRLKS 747
Score = 50 (22.7 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 419 ERPEKV-STDHFACNETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEE 477
E+ +K+ S+D F V C+ C ++ + D FC +D HQ+C P
Sbjct: 238 EKFDKIPSSDLFRGRHREV-CEVCS-----IEGDLPDKGPLVFCQGCTDAYHQACLGPRT 291
Query: 478 A 478
A
Sbjct: 292 A 292
Score = 47 (21.6 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI + L+
Sbjct: 628 ILADEMGLGKTIQVIGLL 645
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 108 (43.1 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 43/217 (19%), Positives = 101/217 (46%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSLAW-DYDVVITTFN 669
+ + ++I+ P +D+W +I++ P + + D +K +L D+DV++TT+
Sbjct: 370 IKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFDVLLTTYE 429
Query: 670 RLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN-LTNKLQMAISLTASNRWLLTGXXX 728
+ + KS + + W +++DE H + + + L++ ++ L + NR L+TG
Sbjct: 430 IVIKD-----KSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRF---LRSENRLLITGTPL 481
Query: 729 XXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRC---- 784
+ L L +L FL + + N + +D + + +S ++ LH
Sbjct: 482 H----NNLKELWSLLNFLMPKIF-DNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPF 536
Query: 785 MISARKTDL-QTIPLCIKEVTFLNFTEEHAGTYNELV 820
M+ K ++ Q++P + F+ ++ Y++++
Sbjct: 537 MLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDIL 573
Score = 97 (39.2 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 35/156 (22%), Positives = 69/156 (44%)
Query: 957 DLIELQPSYRQWSNT-NTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAG 1015
D IE +P Y + ++ T K L L K +V++FSQ + +I+
Sbjct: 608 DGIE-EPPYIEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKN 666
Query: 1016 IKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDR 1073
+ + + ++ F S + LL + +G++L+ V L + ++
Sbjct: 667 YPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNP 726
Query: 1074 SMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
M+ Q + RAHR+G + + V + +VEE+++E
Sbjct: 727 QMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVE 762
Score = 55 (24.4 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 343 GILADEMGLGKTLQTISLL 361
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 108 (43.1 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 43/217 (19%), Positives = 101/217 (46%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWT-DHKKPSAHSLAW-DYDVVITTFN 669
+ + ++I+ P +D+W +I++ P + + D +K +L D+DV++TT+
Sbjct: 370 IKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFDVLLTTYE 429
Query: 670 RLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN-LTNKLQMAISLTASNRWLLTGXXX 728
+ + KS + + W +++DE H + + + L++ ++ L + NR L+TG
Sbjct: 430 IVIKD-----KSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRF---LRSENRLLITGTPL 481
Query: 729 XXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRC---- 784
+ L L +L FL + + N + +D + + +S ++ LH
Sbjct: 482 H----NNLKELWSLLNFLMPKIF-DNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPF 536
Query: 785 MISARKTDL-QTIPLCIKEVTFLNFTEEHAGTYNELV 820
M+ K ++ Q++P + F+ ++ Y++++
Sbjct: 537 MLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDIL 573
Score = 97 (39.2 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 35/156 (22%), Positives = 69/156 (44%)
Query: 957 DLIELQPSYRQWSNT-NTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAG 1015
D IE +P Y + ++ T K L L K +V++FSQ + +I+
Sbjct: 608 DGIE-EPPYIEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKN 666
Query: 1016 IKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDR 1073
+ + + ++ F S + LL + +G++L+ V L + ++
Sbjct: 667 YPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNP 726
Query: 1074 SMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
M+ Q + RAHR+G + + V + +VEE+++E
Sbjct: 727 QMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVE 762
Score = 55 (24.4 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 343 GILADEMGLGKTLQTISLL 361
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 122 (48.0 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 31/137 (22%), Positives = 65/137 (47%)
Query: 975 LKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL 1034
L++ LY+ E++ DK+++ S + + + EQ G K + M+ + + + +
Sbjct: 615 LERMLYQIKQETD----DKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLV 670
Query: 1035 DMFRH-DASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092
D F + L+ A G++L R+ L +P W+ + ++Q ++R R G +
Sbjct: 671 DTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDC 730
Query: 1093 HVETLAMRGTVEEQMLE 1109
V GT+EE++ +
Sbjct: 731 FVYRFIATGTIEEKIFQ 747
Score = 75 (31.5 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 42/166 (25%), Positives = 71/166 (42%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
++ DEGH L +S +LT L R +L+G + LS +L F +
Sbjct: 407 LLCDEGHRLKNSDSLT--FTALDKLNVQRRVILSGTPIQ----NDLSEYFSLLNFANPGL 460
Query: 751 YGQNQ---KAWDGGILRPFEAE-----MEEGRSRLLQL---LHRCMISARKTDLQT--IP 797
G Q K ++ IL+ +A+ E G ++L +L ++R +I R D+ + +P
Sbjct: 461 LGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIR-RTNDILSKYLP 519
Query: 798 LCIKEVTFLNFTEEHAGTYNELVVTVRRN-ILMADWNDPSHVESLL 842
+ + V F N +E Y + + N IL + P LL
Sbjct: 520 VKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLL 565
Score = 55 (24.4 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 225 HGGMFCDEPGLGKTITALSLI--LKTQGTLADPPDGVK-IIWC 264
+G + DE GLGKT+ ++L+ L Q A P K II C
Sbjct: 288 NGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTIEKAIITC 330
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 118 (46.6 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 32/143 (22%), Positives = 66/143 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ + D P L+ + +V+IFSQ + ++E ++ +
Sbjct: 465 TNSGKMVVLDKLLPKLKEQGS---RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 521
Query: 1029 NKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ S++ + S + +L + LG++L+ V L + W+ ++ Q + RAHR+
Sbjct: 522 ERQASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 581
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G T+ + V TVEE+++E
Sbjct: 582 GQTKTVRVFRFITDNTVEERIVE 604
Score = 82 (33.9 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 37/170 (21%), Positives = 76/170 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS----LAWDYDVVITTFNRLS 672
+++VP + +W + ++ V P + + D + +A L ++DV +T++ L
Sbjct: 218 MVLVPKSTLHNWMNEFKRWV-PTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLI 276
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 277 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 326
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLH 782
+ L L +L FL + + ++ +D F+ G +L++ LH
Sbjct: 327 -NNLHELWALLNFLLPDVFNSSED-FDSW----FDTNNCLGDQKLVERLH 370
Score = 55 (24.4 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 186 GILADEMGLGKTLQTISLL 204
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 143 (55.4 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 34/126 (26%), Positives = 61/126 (48%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L KA + +IF+Q + + V+EQ L + G ++ + + D F +D
Sbjct: 1382 LRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRI 1441
Query: 1044 LALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
LA ++ S LG++L+ V + W+ +M++Q R HR+G TR +H+ T
Sbjct: 1442 LAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYT 1501
Query: 1103 VEEQML 1108
+E +L
Sbjct: 1502 IESNIL 1507
Score = 64 (27.6 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 36/172 (20%), Positives = 77/172 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW----DYDVVITTFNRLS 672
L+VVP+ ++ +W+ + ++ PG + + + ++ W ++V+IT++ +
Sbjct: 878 LVVVPTSVILNWEMEFKKWC-PGFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQLVL 936
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ + + + W ++LDE H + + + + Q ++ R LLTG
Sbjct: 937 QD-----QQVLKRRSWHYMILDEAHNIKNFRS--QRWQALLTFRTRARLLLTGTPLQ--- 986
Query: 733 XSQLSHLQPMLKFLH----EEA--YG-QNQKAWDGGILRPFEAEMEEGRSRL 777
+ L+ L +L FL +EA G + + + RP E +E GR +
Sbjct: 987 -NNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETM 1037
Score = 54 (24.1 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI ++L+
Sbjct: 846 GILADEMGLGKTIQTIALL 864
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 119 (46.9 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 37/141 (26%), Positives = 68/141 (48%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HS 1027
S TFL L R E ++ L +FSQ + ++++E+ L K + + H
Sbjct: 439 SGKMTFLMDLLKRLRDEGHQTL-----VFSQSRQILNILERLLKNRHFKILRIDGTITHL 493
Query: 1028 SNKIKSLDMFRHDAS-CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ K + +F+ + + LL +GL L+ +RV + +P W+ + + Q + R +R+
Sbjct: 494 VEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRI 553
Query: 1087 GATRPIHVETLAMRGTVEEQM 1107
G + V L GTVEE++
Sbjct: 554 GQKENVVVYRLITCGTVEEKI 574
Score = 87 (35.7 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 30/112 (26%), Positives = 51/112 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPG-QLHLFVWT--DHKKPSAHSLAWDYDVVITTFNRLSA 673
L+++P+ L+ W + + PG ++ F D + + + V+ITT+ L
Sbjct: 127 LLIMPTSLISTWLREFVKWT-PGMRVKTFHGPSKDERTRNLSRIQQRNGVIITTYQMLIN 185
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
W + + W V+LDE H + +S T A ++ A NR LLTG
Sbjct: 186 NWQQLSSLNGREFVWDYVILDEAHKIKTSS--TKSAICARAIPARNRILLTG 235
Score = 51 (23.0 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ ++ +
Sbjct: 95 GGILADDMGLGKTVQIIAFL 114
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 131 (51.2 bits), Expect = 7.9e-07, Sum P(5) = 7.9e-07
Identities = 41/146 (28%), Positives = 67/146 (45%)
Query: 976 KQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLD 1035
K DL L KA +V+IFSQ + I+++E KF + S + L+
Sbjct: 2027 KFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLE 2086
Query: 1036 MFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIH 1093
+F S + +L + LGL+L V + + W+ M+ Q RAHR+G + +
Sbjct: 2087 LFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVR 2146
Query: 1094 VETLAMRGTVEEQML---EFLQDTDR 1116
V L +VEE +L F ++ D+
Sbjct: 2147 VLRLVTAHSVEESILARANFKKELDK 2172
Score = 93 (37.8 bits), Expect = 7.9e-07, Sum P(5) = 7.9e-07
Identities = 43/178 (24%), Positives = 85/178 (47%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRL--SAE 674
L+VVP + +W + + P + + D KP+ S ++ + FN + + E
Sbjct: 1764 LVVVPLSTLSNWGQEFSKWA-PKVKRVLYYGD--KPARKSKFEEF-IAPGQFNAVVTTYE 1819
Query: 675 WGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRW--LLTGXXXXXXX 732
+ + K+ + ++ W +++DEGH + N T+KL + + + S+R+ LLTG
Sbjct: 1820 YIIKDKNALSKIKWNYLIVDEGHRMK---NYTSKLSIILGTSYSSRYRLLLTGTPLQ--- 1873
Query: 733 XSQLSHLQPMLKFLHEEAYG--QNQKAW-DGGILRPFEA-EM-EEGRSRLLQLLHRCM 785
+ L L +L FL + ++ + W + + E EM EE + ++Q LH+ +
Sbjct: 1874 -NSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQLLIIQRLHKVL 1930
Score = 55 (24.4 bits), Expect = 7.9e-07, Sum P(5) = 7.9e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI ++L+
Sbjct: 1732 GILADEMGLGKTIQTIALV 1750
Score = 46 (21.3 bits), Expect = 7.9e-07, Sum P(5) = 7.9e-07
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 1112 QDTDRCRRLLKEELVKPEREGARSH-RTLHDFAESNYLSH 1150
+D DR R KE ER+ RS + H ESN H
Sbjct: 2849 RDRDRDRERQKESKEGRERDRERSRDQKEHHSRESNRSDH 2888
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 344 SPLVASSEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVP 403
SPLV SS P ++L+ ++ N D+ + + +D N NS N++
Sbjct: 1468 SPLVRSSNPISNLLN-GKDDDDDDDN-----DDNNQMLDDNNNNNNSNYNNNNNNNNNNN 1521
Query: 404 KRN 406
N
Sbjct: 1522 NNN 1524
Score = 44 (20.5 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 362 NLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSS 399
N N + + +N N+ N+ GNS + NS+
Sbjct: 789 NNNNSNNNSNNNNNSNNNSNNNNNSSGNSNSNSNNNSN 826
Score = 41 (19.5 bits), Expect = 4.1e-06, Sum P(4) = 4.1e-06
Identities = 10/59 (16%), Positives = 25/59 (42%)
Query: 350 SEPATHLVRCTRNLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQV 408
+ P+T + + + ++ Q+ N + + +N N N + +N + + N V
Sbjct: 643 AHPSTFINQSSPSVVQMNTNNSNVNNNNNNNSNSNMNNNNMNSNNNSNMNNNMNNNNGV 701
Score = 40 (19.1 bits), Expect = 5.1e-06, Sum P(4) = 5.1e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 378 SNICNDRNAKGNSTAKK 394
S++ N+ N GN+T +K
Sbjct: 51 SSVSNNSNGGGNATEEK 67
Score = 39 (18.8 bits), Expect = 7.9e-07, Sum P(5) = 7.9e-07
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 166 KLFPHQQAAVEWML 179
KL P+Q ++WM+
Sbjct: 1710 KLKPYQMQGLQWMV 1723
Score = 38 (18.4 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 391 TAKKRANSSRQVPKRNQVGLSYVVS 415
T + +QVP +NQ YVVS
Sbjct: 267 TNMMQQQQQQQVPTKNQHVEVYVVS 291
Score = 38 (18.4 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 379 NICNDRN--AKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDH 428
NI ND + GN+T + +N+S+ R+ +S +++ + + + D+
Sbjct: 1444 NITNDVDIDTDGNTTNRDLSNNSKSPLVRSSNPISNLLNGKDDDDDDDNDDN 1495
Score = 37 (18.1 bits), Expect = 9.9e-06, Sum P(4) = 9.9e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 362 NLGQVKKNLFHTYDEESNICNDRNAKGNSTAKKRANSS 399
N+G N + SN ++ N N+ + NSS
Sbjct: 777 NIGNNNINNISYNNNNSNNNSNNNNNSNNNSNNNNNSS 814
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 118 (46.6 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 37/168 (22%), Positives = 78/168 (46%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F +S + +L
Sbjct: 514 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI-- 631
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTN 1157
F + + + + L +V E++ R H +L + E L S T+
Sbjct: 632 FQRQSHK--KALSSCVVDEEQDVER-HFSLGELKELFILDEASLSDTH 676
Score = 75 (31.5 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 38/139 (27%), Positives = 57/139 (41%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLS--HL--QPMLKFL 746
V+ DEGH L +S N T Q SL S R L++G S H +L
Sbjct: 293 VICDEGHRLKNSENQT--YQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA 350
Query: 747 HEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL---LHRCMISARKTDLQT--IPLCIK 801
HE G EA+ + G RL +L ++RC+I R +D+ + +P+ I+
Sbjct: 351 HEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIR-RTSDILSKYLPVKIE 409
Query: 802 EVTFLNFTEEHAGTYNELV 820
+V T Y +
Sbjct: 410 QVVCCRLTPLQTELYKRFL 428
Score = 56 (24.8 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++L+
Sbjct: 177 HGCIMADEMGLGKTLQCITLM 197
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 140 (54.3 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 32/121 (26%), Positives = 65/121 (53%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ L++ +F + + + ++LD F + S C LL
Sbjct: 813 NRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCF-LLS 871
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +GTVEE ++
Sbjct: 872 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDII 931
Query: 1109 E 1109
E
Sbjct: 932 E 932
Score = 78 (32.5 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 40/208 (19%), Positives = 88/208 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW-DYDVVITTFNRLSAEW 675
++VVP + W+ + + +++ + + W + FN L +
Sbjct: 542 IVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALLTTY 601
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 602 EILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKT--LIDFRSNHRLLITGTPLQ---- 655
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM---ISAR- 789
+ L L +L FL + + ++W+ FE E +GR Q LH+ + + R
Sbjct: 656 NSLKELWSLLHFLMSDKF----ESWED-----FEDEHGKGRDNGYQSLHKVLEPFLLRRV 706
Query: 790 KTDLQ-TIPLCIKEVTFLNFTEEHAGTY 816
K D++ ++P ++++ ++ + + Y
Sbjct: 707 KKDVEKSLPAKVEQILRVDMSAQQKQFY 734
Score = 47 (21.6 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 511 ILADEMGLGKTIQTISFL 528
Score = 45 (20.9 bits), Expect = 5.3e-06, Sum P(5) = 5.3e-06
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 394 KRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNETWVQCDA 440
+R++ SRQ P R +G + E ++ S+ TW D+
Sbjct: 111 RRSSRSRQEPARLNIGAEGSSDSEGESSKRKSSRQKKKENTWKDDDS 157
Score = 42 (19.8 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1113 DTDRCRRLLKEELVKPEREGARSHRTLH 1140
D D+ R K+E KP +G ++ +H
Sbjct: 1412 DKDKKRSKPKKEKAKPAGKGKKAQGPVH 1439
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 1116 RCRRLLKEELVKPEREGARSHRTLHD 1141
+ RL K+ K +EG + H+ D
Sbjct: 1539 KLHRLYKKAQKKRSQEGEKEHKKKDD 1564
Score = 37 (18.1 bits), Expect = 5.3e-06, Sum P(5) = 5.3e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 528 WLAKLSPDEL 537
WL K SP++L
Sbjct: 360 WLKKASPEDL 369
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 118 (46.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 32/143 (22%), Positives = 67/143 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ + D P L+ + +V+IFSQ + ++E ++ +
Sbjct: 480 TNSGKMVVLDKLLPKLKEQGS---RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 536
Query: 1029 NKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ +S++ + S + +L + LG++L+ V L + W+ ++ Q + RAHR+
Sbjct: 537 ERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G T+ + V TVEE+++E
Sbjct: 597 GQTKTVRVFRFITDNTVEERIVE 619
Score = 81 (33.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 31/139 (22%), Positives = 65/139 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS----LAWDYDVVITTFNRLS 672
+++VP + +W ++ ++ V P + + D ++ +A L ++DV +T++ L
Sbjct: 233 MVLVPKSTLHNWMSEFKRWV-PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 292 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 341
Query: 733 XSQLSHLQPMLKFLHEEAY 751
+ L L +L FL + +
Sbjct: 342 -NNLHELWSLLNFLLPDVF 359
Score = 55 (24.4 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 201 GILADEMGLGKTLQTISLL 219
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 118 (46.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 32/143 (22%), Positives = 67/143 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ + D P L+ + +V+IFSQ + ++E ++ +
Sbjct: 480 TNSGKMVVLDKLLPKLKEQGS---RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 536
Query: 1029 NKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ +S++ + S + +L + LG++L+ V L + W+ ++ Q + RAHR+
Sbjct: 537 ERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G T+ + V TVEE+++E
Sbjct: 597 GQTKTVRVFRFITDNTVEERIVE 619
Score = 81 (33.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 31/139 (22%), Positives = 65/139 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS----LAWDYDVVITTFNRLS 672
+++VP + +W ++ ++ V P + + D ++ +A L ++DV +T++ L
Sbjct: 233 MVLVPKSTLHNWMSEFKRWV-PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 292 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 341
Query: 733 XSQLSHLQPMLKFLHEEAY 751
+ L L +L FL + +
Sbjct: 342 -NNLHELWSLLNFLLPDVF 359
Score = 55 (24.4 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 201 GILADEMGLGKTLQTISLL 219
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 118 (46.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 32/143 (22%), Positives = 67/143 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ + D P L+ + +V+IFSQ + ++E ++ +
Sbjct: 480 TNSGKMVVLDKLLPKLKEQGS---RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 536
Query: 1029 NKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ +S++ + S + +L + LG++L+ V L + W+ ++ Q + RAHR+
Sbjct: 537 ERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G T+ + V TVEE+++E
Sbjct: 597 GQTKTVRVFRFITDNTVEERIVE 619
Score = 81 (33.6 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 31/139 (22%), Positives = 65/139 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS----LAWDYDVVITTFNRLS 672
+++VP + +W ++ ++ V P + + D ++ +A L ++DV +T++ L
Sbjct: 233 MVLVPKSTLHNWMSEFKRWV-PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 292 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 341
Query: 733 XSQLSHLQPMLKFLHEEAY 751
+ L L +L FL + +
Sbjct: 342 -NNLHELWSLLNFLLPDVF 359
Score = 55 (24.4 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 201 GILADEMGLGKTLQTISLL 219
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 135 (52.6 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 32/121 (26%), Positives = 63/121 (52%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + L F + + + ++LD F + S C LL
Sbjct: 801 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCF-LLS 859
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +G+VEE +L
Sbjct: 860 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 919
Query: 1109 E 1109
E
Sbjct: 920 E 920
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVW----TDHKKPSAHSLAW--------DYDVV 664
L+VVP + W+ +IQ P Q++ V+ T H W ++++
Sbjct: 530 LLVVPLSTLTSWQREIQTWA-P-QMNAVVYLGDITSRNMIRTHE--WMHPQTKRLKFNIL 585
Query: 665 ITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLT 724
+TT+ L + KS + ++W + +DE H L + +L K I +++R L+T
Sbjct: 586 LTTYEILLKD-----KSFLGGLNWAFIGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLIT 638
Query: 725 GXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHR- 783
G + L L +L F+ E + +W+ FE E +GR LH+
Sbjct: 639 GTPLQ----NSLKELWSLLHFIMPEKFS----SWED-----FEEEHGKGREYGYASLHKE 685
Query: 784 ---CMISARKTDLQ-TIPLCIKEV 803
++ K D++ ++P ++++
Sbjct: 686 LEPFLLRRVKKDVEKSLPAKVEQI 709
Score = 51 (23.0 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 51 WQFPKSGAIAGSLFRHVSCDWEKRKSVLLDGGECFKDGCDSSIWNISDCHVLDWKPDSSR 110
WQ SG+++G+ D E + DG K C+ S + + + + SR
Sbjct: 146 WQMSGSGSVSGT-----GSDSESEE----DGD---KSSCEESESDYEPKNKVKSRKPPSR 193
Query: 111 VKPEDNSCSTG 121
+KP+ STG
Sbjct: 194 IKPKSGKKSTG 204
Score = 47 (21.6 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 499 ILADEMGLGKTIQTISFL 516
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 113 (44.8 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N + D P L+ + +V+IFSQ + ++E L G ++ +
Sbjct: 492 TNAGKMVLLDKLLPKLKDRDS---RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGD 548
Query: 1029 NKIKSLDMFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ S++ + S + LL + LG++L+ V L + W+ ++ Q RAHR+
Sbjct: 549 ERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRI 608
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G + + V +E +++E
Sbjct: 609 GQKKEVQVFRFCTENAIEAKVIE 631
Score = 92 (37.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 35/181 (19%), Positives = 81/181 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS---LAWDYDVVITTFNRLSA 673
++V P + +W +I++ + F+ ++ +A +D+ +T+F
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSF----- 301
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
E ++K+ + + W +++DE H + + +L +K S + R L+TG
Sbjct: 302 EMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFS--TNYRLLITGTPLQ---- 355
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL 793
+ L L +L FL E + + + +D E + +E +L ++L ++ K+D+
Sbjct: 356 NNLHELWALLNFLLPEVFS-SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV 414
Query: 794 Q 794
+
Sbjct: 415 E 415
Score = 55 (24.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 215 GILADEMGLGKTLQTISLL 233
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 162 CMKLKLFPHQQAAVEWML 179
C++ KL +Q A + W++
Sbjct: 189 CIQGKLRDYQLAGLNWLI 206
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 116 (45.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 30/117 (25%), Positives = 60/117 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDAS-CLALLMDG 1050
+ ++FSQ + +++IE+ L K + + H + K + +F+ + + LL
Sbjct: 480 QTLVFSQSRQILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQ 539
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
+GL L+ +RV + +P W+ + + Q + R +R+G + V L GTVEE++
Sbjct: 540 VGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 596
Score = 88 (36.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 32/112 (28%), Positives = 48/112 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYD---VVITTFNRLSA 673
L+++P+ L++ W + + PG K +L VVITT+ L
Sbjct: 149 LLIMPTNLINTWVKEFAKWT-PGMRVKTFHGSSKNERIRNLTRIQQRNGVVITTYQMLLN 207
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
W + W V+LDE H + S+ T A ++ ASNR LLTG
Sbjct: 208 NWQQLASFNGQAFVWDYVILDEAHKIKSAS--TKSAVCARAVPASNRLLLTG 257
Score = 51 (23.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ ++ +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 116 (45.9 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMDGS 1051
+ +IF+Q + + + E L + + + + + F D L +L S
Sbjct: 1397 RALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTERFNTDPKIFLFILSTRS 1456
Query: 1052 ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
LGL+L+ V + W+ SM+ Q R HR+G TR +++ + T+EE +L+
Sbjct: 1457 GGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNIYRFITQHTIEENILK 1514
Score = 92 (37.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 40/164 (24%), Positives = 74/164 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKP-SAHSLAWD----YDVVITTFNRL 671
LIVVPS ++ +W+ + ++ PG L +F + + A+ W + V IT+++ +
Sbjct: 834 LIVVPSSVLFNWEMEFKRWC-PG-LKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSMV 891
Query: 672 SAEW--GRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXX 729
++ RRKK W+ ++LDE H + + T + Q + R LLTG
Sbjct: 892 MSDHLIFRRKK-------WVYMILDEAHVIKNFK--TQRWQNMLHFNTERRLLLTGTPLQ 942
Query: 730 XXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEG 773
+ L L ++ FL + + Q+ + + P +E G
Sbjct: 943 ----NNLMELWSLMHFLMPDIF-QSHREFQDWFSNPVTGMIEGG 981
Score = 59 (25.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SLI
Sbjct: 802 GILADEMGLGKTIMTISLI 820
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 141 (54.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 51/215 (23%), Positives = 103/215 (47%)
Query: 919 AMDSEKCSLPGCGFL---YEMQSPEILTRPENPNPKWPV-PQD---LIELQPSYRQWSNT 971
++++++C + G L ++ QS + PE P + PQ+ I + +++
Sbjct: 1051 SLEAKQCLVSGAPELAADWQKQSSQFF--PEYPGGLLGIRPQNGWSFIRIPDKESLITDS 1108
Query: 972 NTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKI 1031
DL L+S +V+I+SQ I ++E+ + K Y + S+KI
Sbjct: 1109 GKLHALDLLLTRLKSQG---HRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKI 1161
Query: 1032 KSL-DM---FRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
DM F++ L+ A LG++L+ V + W+ ++++Q + RAHR+
Sbjct: 1162 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1221
Query: 1087 GATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLL 1121
G T+ + V L +GT+EE++L+ ++ +R++
Sbjct: 1222 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMV 1256
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS--QLSH-LQP 741
+V W ++LDE L SS ++ K+ + NR LLTG L H + P
Sbjct: 648 RVKWQYMVLDEAQALKSSSSVRWKI--LLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 705
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISARKTDLQ 794
L HEE K + ++ ++E + SRL +L M+ K D++
Sbjct: 706 TLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFMLRRIKKDVE 757
Score = 54 (24.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 544 GILADEMGLGKTVQSIALL 562
Score = 41 (19.5 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 779 QLLHRCMISARKTDLQTIPLCIKE 802
+L H+CM R+ LQ C KE
Sbjct: 314 KLAHQCMREVRRAALQAQKNC-KE 336
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 137 (53.3 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 38/140 (27%), Positives = 73/140 (52%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DMF-----RHDA 1041
K+ +V+I+SQ I ++E+ + K Y + S+KI DM R+D
Sbjct: 1117 KSQGHRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKISERRDMVADFQTRNDI 1172
Query: 1042 SCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
LL + LG++L+ V + W+ ++++Q + RAHR+G T+ + V L +G
Sbjct: 1173 FVF-LLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1231
Query: 1102 TVEEQMLEFLQDTDRCRRLL 1121
T+EE++L+ ++ +R++
Sbjct: 1232 TIEERILQRAKEKSEIQRMV 1251
Score = 66 (28.3 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 36/140 (25%), Positives = 58/140 (41%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS--QLSH-LQP 741
+V W ++LDE L SS ++ K+ + NR LLTG L H + P
Sbjct: 645 RVKWQYMVLDEAQALKSSSSVRWKI--LLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 702
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISARKTDLQT-IPLC 799
L HEE K + ++ ++E + SRL +L M+ K D++ +
Sbjct: 703 TLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFMLRRIKKDVENELSDK 760
Query: 800 IKEVTFLNFTEEHAGTYNEL 819
I+ +T+ T Y L
Sbjct: 761 IEILTYCQLTSRQKLLYQAL 780
Score = 54 (24.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 541 GILADEMGLGKTVQSIALL 559
Score = 41 (19.5 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 491 FHAKGTSDGKKQNVSFFISVLKEHYLLINSMTKKALT-WLA 530
FH KG ++G + FI V + N M + L WLA
Sbjct: 880 FHRKGINEGSCFSFLRFIDVSPAE--MANLMLQGLLARWLA 918
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 116 (45.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 32/143 (22%), Positives = 66/143 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ + D P L+ + +V+IFSQ + ++E ++ +
Sbjct: 479 TNSGKMVVLDKLLPKLKEQGS---RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 535
Query: 1029 NKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ S++ + S + +L + LG++L+ V L + W+ ++ Q + RAHR+
Sbjct: 536 ERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 595
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G T+ + V TVEE+++E
Sbjct: 596 GQTKTVRVFRFITDNTVEERIVE 618
Score = 81 (33.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 31/139 (22%), Positives = 65/139 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS----LAWDYDVVITTFNRLS 672
+++VP + +W ++ ++ V P + + D ++ +A L ++DV +T++ L
Sbjct: 232 MVLVPKSTLHNWMSEFKKWV-PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 290
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 291 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 340
Query: 733 XSQLSHLQPMLKFLHEEAY 751
+ L L +L FL + +
Sbjct: 341 -NNLHELWSLLNFLLPDVF 358
Score = 55 (24.4 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 200 GILADEMGLGKTLQTISLL 218
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 116 (45.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 32/143 (22%), Positives = 66/143 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ + D P L+ + +V+IFSQ + ++E ++ +
Sbjct: 479 TNSGKMVVLDKLLPKLKEQGS---RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 535
Query: 1029 NKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ S++ + S + +L + LG++L+ V L + W+ ++ Q + RAHR+
Sbjct: 536 ERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 595
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G T+ + V TVEE+++E
Sbjct: 596 GQTKTVRVFRFITDNTVEERIVE 618
Score = 81 (33.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 31/139 (22%), Positives = 65/139 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS----LAWDYDVVITTFNRLS 672
+++VP + +W ++ ++ V P + + D ++ +A L ++DV +T++ L
Sbjct: 232 MVLVPKSTLHNWMSEFKRWV-PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 290
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 291 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 340
Query: 733 XSQLSHLQPMLKFLHEEAY 751
+ L L +L FL + +
Sbjct: 341 -NNLHELWSLLNFLLPDVF 358
Score = 55 (24.4 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 200 GILADEMGLGKTLQTISLL 218
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 116 (45.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 32/143 (22%), Positives = 66/143 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ + D P L+ + +V+IFSQ + ++E ++ +
Sbjct: 480 TNSGKMVVLDKLLPKLKEQGS---RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 536
Query: 1029 NKIKSLDMFRHDASC--LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086
+ S++ + S + +L + LG++L+ V L + W+ ++ Q + RAHR+
Sbjct: 537 ERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
Query: 1087 GATRPIHVETLAMRGTVEEQMLE 1109
G T+ + V TVEE+++E
Sbjct: 597 GQTKTVRVFRFITDNTVEERIVE 619
Score = 81 (33.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 31/139 (22%), Positives = 65/139 (46%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS----LAWDYDVVITTFNRLS 672
+++VP + +W ++ ++ V P + + D ++ +A L ++DV +T++ L
Sbjct: 233 MVLVPKSTLHNWMSEFKRWV-PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
E KS + +W +++DE H + + + +++ T NR LLTG
Sbjct: 292 KE-----KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT--NRLLLTGTPLQ--- 341
Query: 733 XSQLSHLQPMLKFLHEEAY 751
+ L L +L FL + +
Sbjct: 342 -NNLHELWSLLNFLLPDVF 359
Score = 55 (24.4 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 201 GILADEMGLGKTLQTISLL 219
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 137 (53.3 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 32/120 (26%), Positives = 64/120 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLMD 1049
+V+IFSQ + + ++ + L++ G +F + + + +++D F AS C LL
Sbjct: 957 RVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCF-LLST 1015
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V + + W+ + Q +SRAHR+G +++ +VEE++LE
Sbjct: 1016 RAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILE 1075
Score = 76 (31.8 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 33/149 (22%), Positives = 65/149 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQ-LHLFVWTDHKKPSAHSLAWDYDVVI---TTFNRL- 671
L+VVP + +W + ++ + PG + ++V T + + + + FN L
Sbjct: 678 LVVVPLSTLANWAKEFRKWL-PGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIKFNALL 736
Query: 672 -SAEWGRRKKSPMMQVHWLRVMLDEGHTL-GSSLNLTNKLQMAISLTASNRWLLTGXXXX 729
+ E + K+ + ++ W+ +M+DE H L S L L + + N+ L+TG
Sbjct: 737 TTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTAL---LEFSTKNKLLITGTPLQ 793
Query: 730 XXXXS--QLSHLQPMLKFLHEEAYGQNQK 756
L H KF +++ + +N K
Sbjct: 794 NSVEELWALLHFLDPGKFKNKDEFVENYK 822
Score = 51 (23.0 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 228 MFCDEPGLGKTITALSLILKTQGTLADP 255
+ DE GLGKT+ ++S++ Q T P
Sbjct: 647 ILADEMGLGKTVQSVSMLGFLQNTQQIP 674
Score = 40 (19.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 1128 PEREGARSHRTLHDFAESNYLS 1149
P+R+ R +RT+ F N ++
Sbjct: 1269 PKRDAQRFYRTVMKFGNHNQMA 1290
Score = 39 (18.8 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 374 YDEESNICNDRNAKGNSTAKKRANSSRQVPKRNQVGLSYVVSNSCERPEKVSTDHFACNE 433
Y E N NDR+ K +S + N + + N++ E +S +++ +E
Sbjct: 128 YHSEDNHSNDRSEKLDS---ENENDNENEEEDNEMNKHQSGQADVPADEMLSDEYYEQDE 184
Query: 434 TWVQCDACH 442
Q D H
Sbjct: 185 D-NQSDHVH 192
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 142 (55.0 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 38/139 (27%), Positives = 75/139 (53%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DM---FRHDASC 1043
KA +V+I+SQ + I ++E+ + + Y + S+KI + DM F+ A
Sbjct: 1169 KANGHRVLIYSQMTKMIDLLEEYMWHRKHR----YMRLDGSSKISARRDMVADFQTRADI 1224
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V + W+ ++++Q + RAHR+G T+ + V L +GT
Sbjct: 1225 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGT 1284
Query: 1103 VEEQMLEFLQDTDRCRRLL 1121
+EE++L+ ++ +R++
Sbjct: 1285 IEERILQRAREKSEIQRMV 1303
Score = 65 (27.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 33/134 (24%), Positives = 59/134 (44%)
Query: 620 VPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRR 678
VP + +V +W + ++ + L F W D K H+ + VVIT++ + +++
Sbjct: 607 VPDFKVVPYWGSPAERKI----LRQF-W-DQKH--LHTRDASFHVVITSYQLVVSDY--- 655
Query: 679 KKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS--QL 736
++ W ++LDE + S+ + KL + S NR LL+G L
Sbjct: 656 --KYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFS--CRNRLLLSGTPIQNSMAELWAL 711
Query: 737 SH-LQPMLKFLHEE 749
H + P L H+E
Sbjct: 712 LHFIMPTLFDSHDE 725
Score = 50 (22.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++ +
Sbjct: 556 GILADEMGLGKTVQSIAFL 574
Score = 40 (19.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 37 VLVDIYLPIAAWSGWQFPKSGAIAGSLFRHVSCDWEKRKSVLLDG-GECFKDGCDSSI 93
+L D+ + A + + S + A S RH C+ + + ++ G C G SSI
Sbjct: 1086 ILYDLGQKVQAVHRYLYCDSRSAAWSQIRHNQCENSQGRELVSSGLALCKPHGGWSSI 1143
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 118 (46.6 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 27/120 (22%), Positives = 60/120 (50%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F + +S + +L
Sbjct: 508 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 567
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++L+
Sbjct: 568 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQ 627
Score = 72 (30.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 36/133 (27%), Positives = 65/133 (48%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEE 749
V+ DEGH L +S N T +A+ S+ A R L++G S ++ F++
Sbjct: 287 VICDEGHRLKNSDNQT---YLALNSMNAQRRVLISGTPIQNDLLEYFS----LVHFVNSG 339
Query: 750 AYGQNQ---KAWDGGILRPFEAEMEE-----GRSRLLQLL---HRCMISARKTDLQT--I 796
G Q K ++ IL+ +A+ + G +L +L+ +RC+I R +D+ + +
Sbjct: 340 ILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIR-RTSDILSKYL 398
Query: 797 PLCIKEVTFLNFT 809
P+ I++V N T
Sbjct: 399 PVKIEQVVCCNLT 411
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 212 DIATGTAPTMRDFHGGMFCDEPGLGKTITALSLI 245
D TG + + +G + DE GLGKT+ ++LI
Sbjct: 160 DCVTGRR--IENSYGCIMADEMGLGKTLQCITLI 191
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 148 (57.2 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDGS 1051
+V+IFSQ + + ++ L++ GI F + + S+ + S+D F D++ L+
Sbjct: 713 RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 772
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A LG++L V + + W+ + Q ++RAHR+G + V L + TVEE++LE
Sbjct: 773 AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE 831
Score = 57 (25.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASN 719
++V++TT+ E+ + ++ + + W + +DE H L N + L ++ S +N
Sbjct: 485 FNVLLTTY-----EYILKDRAELGSIKWQFMAVDEAHRLK---NAESSLYESLNSFKVAN 536
Query: 720 RWLLTG 725
R L+TG
Sbjct: 537 RMLITG 542
Score = 50 (22.7 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ ++ I
Sbjct: 397 GILADEMGLGKTVQTVAFI 415
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 117 (46.2 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 37/168 (22%), Positives = 78/168 (46%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F +S + +L
Sbjct: 514 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSS 573
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 574 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI-- 631
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNYLSHLSFVRTN 1157
F + + + + L +V E++ R H +L + E L S T+
Sbjct: 632 FQRQSHK--KALSSCVVDEEQDVER-HFSLGELKELFTLDEASLSDTH 676
Score = 73 (30.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 38/140 (27%), Positives = 63/140 (45%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
V+ DEGH L +S N T Q SL S R L++G S + + L A
Sbjct: 293 VICDEGHRLKNSENQT--YQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGLLGTA 350
Query: 751 YGQNQKAWDGGILRPFEAEMEE-----GRSRLLQL---LHRCMISARKTDLQT--IPLCI 800
+ + +K ++ IL+ +A E G RL +L ++RC+I R +D+ + +P+ I
Sbjct: 351 H-EFKKRFELPILKGRDAAASEEDRRLGEERLRELTSIVNRCLIR-RTSDILSKYLPVKI 408
Query: 801 KEVTFLNFTEEHAGTYNELV 820
++V T Y +
Sbjct: 409 EQVVCCRLTPLQTELYKRFL 428
Score = 56 (24.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++L+
Sbjct: 177 HGCIMADEMGLGKTLQCITLM 197
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 142 (55.0 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 32/119 (26%), Positives = 66/119 (55%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMDGS 1051
+V+IFSQ + + ++++ L + + M + + ++LD + S A L+
Sbjct: 729 RVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTR 788
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
A LG++L+ V + + W+ + Q +SRAHR+G T+ +++ L +G+VEE+++E
Sbjct: 789 AGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVE 847
Score = 60 (26.2 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 41/227 (18%), Positives = 90/227 (39%)
Query: 609 RLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW--------D 660
R L+ L+VVP + W+ + Q L +++ + W
Sbjct: 450 RYDLAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMK 509
Query: 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNR 720
+ ++TT+ L + K+ + + W +++DE H L + +L K +++
Sbjct: 510 INAILTTYEILLKD-----KAFLSSIDWAALLVDEAHRLKNDESLLYK--SLTQFRFNHK 562
Query: 721 WLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQL 780
L+TG + L L +L F+ E + W+ FE E + +
Sbjct: 563 LLITGTPLQ----NSLKELWALLHFIMPEKFD----CWE-----EFETAHNESNHKGISA 609
Query: 781 LHR----CMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVT 822
LH+ ++ K D++ ++P +++ ++ T H + + ++T
Sbjct: 610 LHKKLEPFLLRRVKKDVEKSLPPKTEQILRVDMTA-HQKQFYKWILT 655
Score = 53 (23.7 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
+ + DE GLGKTI ++SL+
Sbjct: 424 NSSILADEMGLGKTIQSISLL 444
Score = 49 (22.3 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 443 KWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEE 477
KWR + + AT + + DP Q GD E
Sbjct: 202 KWRHGVPGATGSATTCYNIADKGDPNDQIPGDKTE 236
Score = 47 (21.6 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 562 HKIFQAFGLIRRVEKGITRWYYPKT 586
HK + F L+RRV+K + + PKT
Sbjct: 611 HKKLEPF-LLRRVKKDVEKSLPPKT 634
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 117 (46.2 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 34/155 (21%), Positives = 75/155 (48%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMD 1049
DKV++ S + + + + E+ + + M + K ++ F + +S + +L
Sbjct: 515 DKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSS 574
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ GL+L R+ + +P W+ + +EQ ++R R G + ++ L GT+EE++
Sbjct: 575 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKI-- 632
Query: 1110 FLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAE 1144
F + + + + L +V E++ R H +L + E
Sbjct: 633 FQRQSHK--KALSSCVVDEEQDVER-HFSLGELKE 664
Score = 73 (30.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 38/132 (28%), Positives = 61/132 (46%)
Query: 691 VMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEA 750
V+ DEGH L +S N T Q SL S R L++G S ++ F++
Sbjct: 294 VICDEGHRLKNSENQT--YQALDSLNTSRRVLISGTPIQNDLLEYFS----LVHFVNSGI 347
Query: 751 YGQNQ---KAWDGGILRPFEAEMEE-----GRSRLLQL---LHRCMISARKTDLQT--IP 797
G Q K ++ IL+ +A E G RL +L ++RC+I R +D+ + +P
Sbjct: 348 LGTAQEFKKHFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIR-RTSDILSKYLP 406
Query: 798 LCIKEVTFLNFT 809
+ I++V T
Sbjct: 407 VKIEQVVCCRLT 418
Score = 56 (24.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++L+
Sbjct: 178 HGCIMADEMGLGKTLQCITLM 198
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 141 (54.7 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L KA +V+IF+Q + V+EQ LT G + + + ++ F D
Sbjct: 2040 LRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI 2099
Query: 1044 LALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
++ S +G++L+ V + W+ +M+ Q R HR+G TR +H+ L T
Sbjct: 2100 FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 2159
Query: 1103 VEEQMLE 1109
VEE +L+
Sbjct: 2160 VEENILK 2166
Score = 67 (28.6 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 36/176 (20%), Positives = 73/176 (41%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD----YDVVITTFNR-L 671
LI+VP+ ++ +W+ ++++ P L + K+ W + V IT++ L
Sbjct: 681 LIIVPTSVMLNWEMELKRWC-PSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 739
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
R+K+ W ++LDE + + + + Q ++ + R LLTG
Sbjct: 740 QDHQAFRRKN------WRYLILDEAQNIKNFKS--QRWQSLLNFNSQRRLLLTGTPLQ-- 789
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQ--KAWDGGILRPFEAEMEEGRSRLLQLLHRCM 785
+ L L ++ FL + ++ K W L +E L++ LH+ +
Sbjct: 790 --NSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVL 843
Score = 57 (25.1 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 649 GILADEMGLGKTIQTISLL 667
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 135 (52.6 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG- 1050
+K ++F+QF++ + ++E L F + + K + F +D S +
Sbjct: 1785 NKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTR 1844
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
S S+G++L+ V + W+ S+++Q + R HR+G T+ +HV TVEE +
Sbjct: 1845 SGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENI 1901
Score = 72 (30.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 48/256 (18%), Positives = 107/256 (41%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW----DYDVVITTFNRLS 672
L++VP+ ++ +W+ ++++ P L + + + + W + + I++++ +
Sbjct: 715 LVIVPTSILINWEIELKRFC-PCFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTVV 773
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ K+ W ++LDE H + + N T + + +SL N L+TG
Sbjct: 774 KDHLVFKRK-----RWKYIILDEAHNI-KNFN-TKRWNIILSLKRDNCLLITGTPLQ--- 823
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQ--KAWDGGILRPFEAEMEEGRSRLLQLLHRC--MISA 788
+ L L +L FL + + K W P +E+ + +H +I
Sbjct: 824 -NSLEELWSLLHFLMPNIFTSHLDFKEWFSD---PLNLAIEKSK------IHHSKELIDR 873
Query: 789 RKTDLQTIPLCIKEVTFLNFTEEHAGTYNELV---VTVRRNILMADWNDPSHVESLLNPK 845
T ++ P ++ + N +E Y ++ +T R+ IL ++ + +V++ LN
Sbjct: 874 LHTVIR--PYILRRLK-KNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTG 930
Query: 846 QWKFRSTTIRNLRLSC 861
+ + LR C
Sbjct: 931 NYIGLMNILIQLRKVC 946
Score = 55 (24.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 683 GILADEMGLGKTLQCISLL 701
Score = 44 (20.5 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 148 TCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLH 180
TC I P +K L +Q A + W+L+
Sbjct: 643 TCNMDEKHLTKIPPIIKATLRDYQHAGLHWLLY 675
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 135 (52.6 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG- 1050
+K ++F+QF++ + ++E L F + + K + F +D S +
Sbjct: 1785 NKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTR 1844
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
S S+G++L+ V + W+ S+++Q + R HR+G T+ +HV TVEE +
Sbjct: 1845 SGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCEYTVEENI 1901
Score = 72 (30.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 48/256 (18%), Positives = 107/256 (41%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW----DYDVVITTFNRLS 672
L++VP+ ++ +W+ ++++ P L + + + + W + + I++++ +
Sbjct: 715 LVIVPTSILINWEIELKRFC-PCFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTVV 773
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ K+ W ++LDE H + + N T + + +SL N L+TG
Sbjct: 774 KDHLVFKRK-----RWKYIILDEAHNI-KNFN-TKRWNIILSLKRDNCLLITGTPLQ--- 823
Query: 733 XSQLSHLQPMLKFLHEEAYGQNQ--KAWDGGILRPFEAEMEEGRSRLLQLLHRC--MISA 788
+ L L +L FL + + K W P +E+ + +H +I
Sbjct: 824 -NSLEELWSLLHFLMPNIFTSHLDFKEWFSD---PLNLAIEKSK------IHHSKELIDR 873
Query: 789 RKTDLQTIPLCIKEVTFLNFTEEHAGTYNELV---VTVRRNILMADWNDPSHVESLLNPK 845
T ++ P ++ + N +E Y ++ +T R+ IL ++ + +V++ LN
Sbjct: 874 LHTVIR--PYILRRLK-KNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTG 930
Query: 846 QWKFRSTTIRNLRLSC 861
+ + LR C
Sbjct: 931 NYIGLMNILIQLRKVC 946
Score = 55 (24.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 683 GILADEMGLGKTLQCISLL 701
Score = 44 (20.5 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 148 TCRHLRCLAASIMPCMKLKLFPHQQAAVEWMLH 180
TC I P +K L +Q A + W+L+
Sbjct: 643 TCNMDEKHLTKIPPIIKATLRDYQHAGLHWLLY 675
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 141 (54.7 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L KA +V+IF+Q + V+EQ LT G + + + ++ F D
Sbjct: 2052 LRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI 2111
Query: 1044 LALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
++ S +G++L+ V + W+ +M+ Q R HR+G TR +H+ L T
Sbjct: 2112 FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 2171
Query: 1103 VEEQMLE 1109
VEE +L+
Sbjct: 2172 VEENILK 2178
Score = 67 (28.6 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 36/176 (20%), Positives = 73/176 (41%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD----YDVVITTFNR-L 671
LI+VP+ ++ +W+ ++++ P L + K+ W + V IT++ L
Sbjct: 671 LIIVPTSVMLNWEMELKRWC-PSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 729
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
R+K+ W ++LDE + + + + Q ++ + R LLTG
Sbjct: 730 QDHQAFRRKN------WRYLILDEAQNIKNFKS--QRWQSLLNFNSQRRLLLTGTPLQ-- 779
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQ--KAWDGGILRPFEAEMEEGRSRLLQLLHRCM 785
+ L L ++ FL + ++ K W L +E L++ LH+ +
Sbjct: 780 --NSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVL 833
Score = 57 (25.1 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 639 GILADEMGLGKTIQTISLL 657
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 141 (54.7 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L KA +V+IF+Q + V+EQ LT G + + + ++ F D
Sbjct: 2052 LRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI 2111
Query: 1044 LALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
++ S +G++L+ V + W+ +M+ Q R HR+G TR +H+ L T
Sbjct: 2112 FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 2171
Query: 1103 VEEQMLE 1109
VEE +L+
Sbjct: 2172 VEENILK 2178
Score = 67 (28.6 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 36/176 (20%), Positives = 73/176 (41%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD----YDVVITTFNR-L 671
LI+VP+ ++ +W+ ++++ P L + K+ W + V IT++ L
Sbjct: 678 LIIVPTSVMLNWEMELKRWC-PSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 736
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
R+K+ W ++LDE + + + + Q ++ + R LLTG
Sbjct: 737 QDHQAFRRKN------WRYLILDEAQNIKNFKS--QRWQSLLNFNSQRRLLLTGTPLQ-- 786
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQ--KAWDGGILRPFEAEMEEGRSRLLQLLHRCM 785
+ L L ++ FL + ++ K W L +E L++ LH+ +
Sbjct: 787 --NSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVL 840
Score = 57 (25.1 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 646 GILADEMGLGKTIQTISLL 664
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 141 (54.7 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 35/127 (27%), Positives = 60/127 (47%)
Query: 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC 1043
L KA +V+IF+Q + V+EQ LT G + + + ++ F D
Sbjct: 2063 LRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI 2122
Query: 1044 LALLMDG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
++ S +G++L+ V + W+ +M+ Q R HR+G TR +H+ L T
Sbjct: 2123 FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 2182
Query: 1103 VEEQMLE 1109
VEE +L+
Sbjct: 2183 VEENILK 2189
Score = 67 (28.6 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 36/176 (20%), Positives = 73/176 (41%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD----YDVVITTFNR-L 671
LI+VP+ ++ +W+ ++++ P L + K+ W + V IT++ L
Sbjct: 679 LIIVPTSVMLNWEMELKRWC-PSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVL 737
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
R+K+ W ++LDE + + + + Q ++ + R LLTG
Sbjct: 738 QDHQAFRRKN------WRYLILDEAQNIKNFKS--QRWQSLLNFNSQRRLLLTGTPLQ-- 787
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQ--KAWDGGILRPFEAEMEEGRSRLLQLLHRCM 785
+ L L ++ FL + ++ K W L +E L++ LH+ +
Sbjct: 788 --NSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVL 841
Score = 57 (25.1 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 647 GILADEMGLGKTIQTISLL 665
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 122 (48.0 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 30/120 (25%), Positives = 61/120 (50%)
Query: 993 KVIIFSQFLEHIHVIEQQLT---VAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049
+V+IF+Q + ++E +L + + + M + + + ++ F D + LL+
Sbjct: 1781 RVLIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHSIVNQFNSDPTIDVLLLT 1840
Query: 1050 GSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
LGL+L+ V +E W+ + Q + RAHR+G + ++V L GT+EE+++
Sbjct: 1841 THVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITSGTLEEKIM 1900
Score = 81 (33.6 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 25/112 (22%), Positives = 57/112 (50%)
Query: 616 TLIVVPSYLVDHWKTQIQQHVRPGQLH--LFVWTDHKKPSAHSLAWDYDVVITTFNRLSA 673
+L++ P LV HW +I++ + ++ ++ + S D++V+I +++ +
Sbjct: 1440 SLVICPPSLVGHWFYEIKKFCSDSTMKPMTYMGNPSERQAQRSKFKDHNVLIMSYDIM-- 1497
Query: 674 EWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
R + ++H+ +LDEGH + ++ T Q A L +++R +L+G
Sbjct: 1498 ---RNDIDILSEMHFNYCILDEGHIIKNAK--TKLTQAAKRLQSNHRLILSG 1544
Score = 56 (24.8 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ CD+ GLGKT+ + +I
Sbjct: 1398 GILCDDMGLGKTLQTICII 1416
Score = 41 (19.5 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 339 DVDMISPLVA-SSEPATHLVRCTRNLGQVKKNLFHT--YDE----ESNICNDRNAKGNST 391
D+ M+ S+ R RNL + K+N T + E +N N+ N NST
Sbjct: 238 DISMVLDTTGMSARERNKAKRKARNLVKEKENEKPTKRFKEVKSSNNNNNNNNNNNNNST 297
Query: 392 AKKRANSSRQVPK 404
+K + P+
Sbjct: 298 TEKTKQHITEQPQ 310
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 139 (54.0 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 37/139 (26%), Positives = 73/139 (52%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DM---FRHDASC 1043
K+ +V+I+SQ I ++E+ + K Y + S+KI DM F++
Sbjct: 1114 KSQGHRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKISERRDMVADFQNRNDI 1169
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V + W+ ++++Q + RAHR+G T+ + V L +GT
Sbjct: 1170 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGT 1229
Query: 1103 VEEQMLEFLQDTDRCRRLL 1121
+EE++L+ ++ +R++
Sbjct: 1230 IEERILQRAKEKSEIQRMV 1248
Score = 62 (26.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS--QLSH-LQP 741
+V W ++LDE L SS ++ K+ + NR LLTG L H + P
Sbjct: 643 RVKWQYMVLDEAQALKSSSSVRWKI--LLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 700
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISARKTDLQ 794
L HEE K + ++ ++E + SRL +L M+ K D++
Sbjct: 701 TLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFMLRRIKKDVE 752
Score = 54 (24.1 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 539 GILADEMGLGKTVQSIALL 557
Score = 42 (19.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 748 EEAYGQNQKAWDGGILRPF-EAEMEEGRSRLL------QLLHRCMISARKTDLQTIPLCI 800
E+ + +K W + + +A ++ +R L +L H+CM R+ LQ C
Sbjct: 271 EQLNARRRKVWLSIVKKELPKANKQKASARNLFLTNSRKLAHQCMKEVRRAALQAQKNC- 329
Query: 801 KE 802
KE
Sbjct: 330 KE 331
Score = 40 (19.1 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 28/141 (19%), Positives = 65/141 (46%)
Query: 747 HEEAYGQNQKAWDGGILRPF-----EAEMEEGRSRLLQLLHRCMISARKTDL-QTIP--L 798
++ A +NQ + IL+PF + ++E S +++L C +++R+ L Q + +
Sbjct: 723 NKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKI 782
Query: 799 CIKEV--TFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRN 856
I+++ + + T++ T + L+ N++M +H E + W +++
Sbjct: 783 SIEDLLQSSMGSTQQAQNTTSSLM-----NLVMQFRKVCNHPELFERQETWSPFHISLKP 837
Query: 857 LRLSCCVAGH--IKVTDAGED 875
+S + H I+V + D
Sbjct: 838 YHISKFIYRHGQIRVFNHSRD 858
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 126 (49.4 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 31/122 (25%), Positives = 59/122 (48%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKS----LDMFRHDASCLALLM 1048
+ +IF+Q + + V+EQ L G +Y + + KI+ + F D+ ++
Sbjct: 1264 RALIFTQMTKVLDVLEQFLNYHGY----LYMRLDGATKIEDRQILTERFNTDSRITVFIL 1319
Query: 1049 DG-SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107
S LG++L+ V + W+ +M++Q R HR+G TR +H+ T+E +
Sbjct: 1320 SSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1379
Query: 1108 LE 1109
L+
Sbjct: 1380 LK 1381
Score = 72 (30.4 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 54/287 (18%), Positives = 115/287 (40%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWD----YDVVITTFNRLS 672
LIVVP+ ++ +W+ + ++ PG L + ++ W+ + V I ++ +
Sbjct: 749 LIVVPTSVLLNWEMEFKRFA-PGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVV 807
Query: 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXX 732
+ K+ W ++LDE H + + T + Q ++ R LLTG
Sbjct: 808 QDQHSFKRK-----RWQYMVLDEAHNI-KNFRST-RWQALLNFNTQRRLLLTGTPLQNNL 860
Query: 733 X---SQLSHLQPMLKFLHEEAYG-QNQKAWDGGILRPFEAEMEEGRS------------R 776
S L L P ++ G + A+ RP + +E G++ +
Sbjct: 861 AELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAK 920
Query: 777 LLQLLHRCMISARKTDLQT-IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDP 835
L Q+L ++ K D++ +P + + + ++ Y++ + + +A N
Sbjct: 921 LHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNFM 980
Query: 836 SHVESLLNPKQWKFRSTTIRNLR--LSCCVAGHIKVTDAGEDIQETM 880
S V L+ ++ + +R L+ V H +D +D++ T+
Sbjct: 981 SIVNCLMQLRK-VCNHPNLFEVRPILTSFVLEHCVASDY-KDVERTL 1025
Score = 57 (25.1 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKTI +SL+
Sbjct: 717 GILADEMGLGKTIQTISLL 735
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 139 (54.0 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 37/139 (26%), Positives = 73/139 (52%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DM---FRHDASC 1043
K+ +V+I+SQ I ++E+ + K Y + S+KI DM F++
Sbjct: 1118 KSQGHRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKISERRDMVADFQNRNDI 1173
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V + W+ ++++Q + RAHR+G T+ + V L +GT
Sbjct: 1174 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGT 1233
Query: 1103 VEEQMLEFLQDTDRCRRLL 1121
+EE++L+ ++ +R++
Sbjct: 1234 IEERILQRAKEKSEIQRMV 1252
Score = 62 (26.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS--QLSH-LQP 741
+V W ++LDE L SS ++ K+ + NR LLTG L H + P
Sbjct: 646 RVKWQYMVLDEAQALKSSSSVRWKI--LLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 703
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISARKTDLQ 794
L HEE K + ++ ++E + SRL +L M+ K D++
Sbjct: 704 TLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFMLRRIKKDVE 755
Score = 54 (24.1 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 542 GILADEMGLGKTVQSIALL 560
Score = 47 (21.6 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 33/191 (17%), Positives = 76/191 (39%)
Query: 747 HEEAYGQNQKAWDGGILRPF-----EAEMEEGRSRLLQLLHRCMISARKTDL-QTIPLCI 800
++ A +NQ + IL+PF + ++E S +++L C +++R+ L Q +
Sbjct: 726 NKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALK--- 782
Query: 801 KEVTFLNFTEEHAGTYNELVVTVRR--NILMADWNDPSHVESLLNPKQWKFRSTTIRNLR 858
+++ + + G+ + T N++M +H E + W +++ +
Sbjct: 783 NKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQ 842
Query: 859 LSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCV 918
+S + H ++ + VL+ QE F + + N +C + +D
Sbjct: 843 ISKFIYRHGQIRVFNHSRDRWLRVLLSPFAPDYIQESLFHRKGV-NEESCFSFLRFIDVS 901
Query: 919 AMDSEKCSLPG 929
+ L G
Sbjct: 902 PAEMANLMLQG 912
Score = 42 (19.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 748 EEAYGQNQKAWDGGILRPF-EAEMEEGRSRLL------QLLHRCMISARKTDLQTIPLCI 800
E+ + +K W + + +A ++ +R L +L H+CM R+ LQ C
Sbjct: 274 EQLNARRRKVWLSIVKKELPKANKQKASARNLFLTNSRKLAHQCMKEVRRAALQAQKNC- 332
Query: 801 KE 802
KE
Sbjct: 333 KE 334
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 139 (54.0 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 37/139 (26%), Positives = 73/139 (52%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DM---FRHDASC 1043
K+ +V+I+SQ I ++E+ + K Y + S+KI DM F++
Sbjct: 1124 KSQGHRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKISERRDMVADFQNRNDI 1179
Query: 1044 LALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102
L+ A LG++L+ V + W+ ++++Q + RAHR+G T+ + V L +GT
Sbjct: 1180 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGT 1239
Query: 1103 VEEQMLEFLQDTDRCRRLL 1121
+EE++L+ ++ +R++
Sbjct: 1240 IEERILQRAKEKSEIQRMV 1258
Score = 62 (26.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS--QLSH-LQP 741
+V W ++LDE L SS ++ K+ + NR LLTG L H + P
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKI--LLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 709
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISARKTDLQ 794
L HEE K + ++ ++E + SRL +L M+ K D++
Sbjct: 710 TLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFMLRRIKKDVE 761
Score = 54 (24.1 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 548 GILADEMGLGKTVQSIALL 566
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 32/191 (16%), Positives = 76/191 (39%)
Query: 747 HEEAYGQNQKAWDGGILRPF-----EAEMEEGRSRLLQLLHRCMISARKTDL-QTIPLCI 800
++ A +NQ + IL+PF + ++E S +++L C +++R+ L Q +
Sbjct: 732 NKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALK--- 788
Query: 801 KEVTFLNFTEEHAGTYNELVVTVRR--NILMADWNDPSHVESLLNPKQWKFRSTTIRNLR 858
+++ + + G+ + T N++M +H E + W +++ +
Sbjct: 789 NKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQ 848
Query: 859 LSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCV 918
+S + H ++ + VL+ Q+ F + + N +C + +D
Sbjct: 849 ISKFIYRHGQIRVFNHSRDRWLRVLLSPFAPDYIQQSLFHRKGV-NEESCFSFLRFIDVS 907
Query: 919 AMDSEKCSLPG 929
+ L G
Sbjct: 908 PAEMANLMLQG 918
Score = 42 (19.8 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 748 EEAYGQNQKAWDGGILRPF-EAEMEEGRSRLL------QLLHRCMISARKTDLQTIPLCI 800
E+ + +K W + + +A ++ +R L +L H+CM R+ LQ C
Sbjct: 280 EQLNARRRKVWLSIVKKELPKANKQKASARNLFLTNSRKLAHQCMKEVRRAALQAQKNC- 338
Query: 801 KE 802
KE
Sbjct: 339 KE 340
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 153 (58.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 37/136 (27%), Positives = 70/136 (51%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
++++FSQF + +I Q+L G M S ++ ++ F + + L+ +
Sbjct: 915 RILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLISLKAG 974
Query: 1053 SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112
GL+L V L + W+ ++EEQ RAHR+G R + V + +GT+EE++
Sbjct: 975 GTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIF---- 1030
Query: 1113 DTDRCRRLLKEELVKP 1128
D + ++ L +EL++P
Sbjct: 1031 DLQKKKQALVDELIQP 1046
Score = 55 (24.4 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
GG+ D+ GLGKT+ +S +
Sbjct: 636 GGILADDMGLGKTVQTISFL 655
Score = 41 (19.5 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 5/21 (23%), Positives = 16/21 (76%)
Query: 614 RATLIVVPSYLVDHWKTQIQQ 634
+ LI+ P+ L+ +W++++++
Sbjct: 666 KPVLIITPASLLYNWQSELEK 686
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 124 (48.7 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC--LALLMDG 1050
+V+IFSQ + ++E + + ++ + + F D S L +L
Sbjct: 449 RVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTR 508
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V + + W+ M+ Q + RAHR+G + + V L TVEE+++E
Sbjct: 509 AGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVE 567
Score = 69 (29.3 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTAS 718
++DV +T++ E R+KS + +W +++DE H + N +KL + +
Sbjct: 227 EWDVCVTSY-----EMCIREKSVFKKFNWRYLVIDEAHRIK---NEKSKLSEILREFKTA 278
Query: 719 NRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQ 755
NR L+TG + L L +L FL + + ++
Sbjct: 279 NRLLITGTPLQ----NNLHELWALLNFLLPDVFNSSE 311
Score = 55 (24.4 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +SL+
Sbjct: 149 GILADEMGLGKTLQTISLL 167
Score = 44 (20.5 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 957 DLIELQPSYRQWSNTNTFLKQD 978
D+ + +W NTNT L D
Sbjct: 305 DVFNSSEDFDEWFNTNTCLGDD 326
Score = 39 (18.8 bits), Expect = 9.6e-05, Sum P(4) = 9.6e-05
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 449 DASVADATAAWFCSMNSDPTHQSCGDPEEAWDN 481
D + +AT SD S G+ E +DN
Sbjct: 5 DTAAVEATEENSNETTSDAATSSSGEKEAEFDN 37
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 105 (42.0 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 26/119 (21%), Positives = 58/119 (48%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDG 1050
+V+IFSQF + ++E ++ + ++ +++ + S + +L
Sbjct: 453 RVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTR 512
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V + + W+ + Q + RAHR+G + + V L TV+E+++E
Sbjct: 513 AGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERIIE 571
Score = 89 (36.4 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 45/222 (20%), Positives = 99/222 (44%)
Query: 611 YLSRAT--LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHS---LAWDYDVVI 665
Y ++A+ L++VP + +W + ++ + + + + L +DV
Sbjct: 177 YKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCC 236
Query: 666 TTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLT 724
TT+ + + K+ + +++W +++DE H + N +KL + L + NR L+T
Sbjct: 237 TTYEMML-----KVKTQLKKLNWRYIIIDEAHRIK---NEKSKLSETVRELNSENRLLIT 288
Query: 725 GXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRC 784
G + L L +L FL + + + +D F + G + L+Q LH+
Sbjct: 289 GTPLQ----NNLHELWALLNFLLPDIFTSSDD-FDSW----FSNDAMSGNTDLVQRLHKV 339
Query: 785 M---ISAR-KTDLQTIPLCIKEV-TFLNFTEEHAGTYNELVV 821
+ + R K+D++ L KEV ++ ++ Y ++++
Sbjct: 340 LQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLM 381
Score = 55 (24.4 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +S+I
Sbjct: 153 GILADEMGLGKTLQTISMI 171
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 141 (54.7 bits), Expect = 2.9e-06, Sum P(5) = 2.9e-06
Identities = 52/240 (21%), Positives = 107/240 (44%)
Query: 882 VLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLP--------GCGFL 933
++ + ++P +E + + G I C DC + +EK + GF
Sbjct: 1351 LICDTCIEPFIEESSMLPQAKKTKGGAFA-IPCKDCQRLTNEKDIVSHKLYDQVINQGFT 1409
Query: 934 YEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDK 993
E E L+ E K + Q + + P++ +T ++Q + +++ +K
Sbjct: 1410 EEDLHAEYLSEME----KQKIQQKNVYV-PNFESLE-PSTKIEQCIQVIQRVFDESATEK 1463
Query: 994 VIIFSQFLEHIHVIEQ----QLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049
+IIFSQF ++E +L +K+ G + S+ I + +R + L+
Sbjct: 1464 IIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVIN--EFYRDPEKRILLISM 1521
Query: 1050 GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ + GL L+ V +++P W+ +EEQ R +R+ T+ + V L ++ +VE+++ E
Sbjct: 1522 KAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISE 1581
Score = 65 (27.9 bits), Expect = 2.9e-06, Sum P(5) = 2.9e-06
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 226 GGMFCDEPGLGKTITALSLIL 246
GG+ D+ GLGKTI A++L+L
Sbjct: 964 GGLLADDMGLGKTIQAIALML 984
Score = 47 (21.6 bits), Expect = 2.9e-06, Sum P(5) = 2.9e-06
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 833 NDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVL 883
ND + LL+ Q ++ R + C + G + +G IQ +MD L
Sbjct: 1098 NDSTFYRILLDEGQ-NIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDEL 1147
Score = 46 (21.3 bits), Expect = 2.9e-06, Sum P(5) = 2.9e-06
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 614 RATLIVVPSYLVDHWKTQIQQHVRP-GQLHLFVWT---DHKKPSAHSLAWDYDVVITTFN 669
+ LIV P ++ WK +++ V+ + F++ + K LA YD V+ ++
Sbjct: 994 KTNLIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLA-RYDAVLVSYQ 1052
Query: 670 RLSAEW 675
L+ E+
Sbjct: 1053 TLANEF 1058
Score = 43 (20.2 bits), Expect = 2.9e-06, Sum P(5) = 2.9e-06
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 163 MKLKLFPHQQAAVEWMLHREWNAE 186
M + L HQ+ + W+L E +A+
Sbjct: 939 MTVNLLKHQRLGLHWLLQVENSAK 962
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 119 (46.9 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGS 1051
DK+++FS + + ++E+ L G FA + ++ + +D F S L+
Sbjct: 545 DKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTK 604
Query: 1052 AS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
A LGL+L RV + +P W+ S + Q R+ R G R + V L G++EE
Sbjct: 605 AGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEE 659
Score = 65 (27.9 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 25/111 (22%), Positives = 53/111 (47%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWG 676
LI+ PS ++ +W+++ + ++ ++ ++ A +V++T+F+
Sbjct: 202 LIICPSSIIHNWESEFSRWASFFKVSVYHGSNRDMILEKLKARGVEVLVTSFDTF----- 256
Query: 677 RRKKSPMMQ-VHWLRVMLDEGHTLGSSLNLTNKLQMA-ISLTASNRWLLTG 725
R + P++ ++W V+ DE H L N +KL A + + R LTG
Sbjct: 257 -RIQGPVLSGINWEIVIADEAHRLK---NEKSKLYEACLEIKTKKRIGLTG 303
Score = 62 (26.9 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 225 HGGMFCDEPGLGKTITALSLILKTQGTLAD 254
HGG+ D+ GLGKTI ++ + G D
Sbjct: 158 HGGILGDDMGLGKTIQTIAFLAAVYGKDGD 187
>ZFIN|ZDB-GENE-040801-98 [details] [associations]
symbol:morc3b "MORC family CW-type zinc finger 3b"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003594 InterPro:IPR011124 Pfam:PF07496
PROSITE:PS51050 ZFIN:ZDB-GENE-040801-98 GO:GO:0005524 GO:GO:0008270
Gene3D:3.30.565.10 SUPFAM:SSF55874 GeneTree:ENSGT00530000062983
HOVERGEN:HBG055625 OrthoDB:EOG48D0V4 EMBL:BX276127 IPI:IPI00611918
ProteinModelPortal:B8A4L4 Ensembl:ENSDART00000074450
eggNOG:NOG297259 HOGENOM:HOG000203121 Bgee:B8A4L4 Uniprot:B8A4L4
Length = 763
Score = 134 (52.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 432 NETWVQCDACHKWRKLLDASVADATAAWFCSMNSDPTHQSCGDPEEAWD 480
++ WVQCD+C KWR+L D + + WFCSMN DP ++C EE D
Sbjct: 400 DQVWVQCDSCLKWRRLPDG-ITELPEKWFCSMNYDPQFRNCQVEEELED 447
Score = 64 (27.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 763 LRPFEAEMEEGRSRLLQLLHRCMISARKTDLQTIPLCIKEVTFLN-FTEEHA-GTYNELV 820
+R A +EE R+RLL L + + K DL LC + L+ F E++ GT + V
Sbjct: 664 MREDSAALEEERNRLLSRLEK--VEKEKNDLSV--LCDQLKNQLSEFREQNQRGTEEKDV 719
Query: 821 --VTVRRNI--LMADWNDPSHVESL 841
+T+R+N+ L+ + HVE++
Sbjct: 720 RLMTLRQNLCRLLVSFIPSLHVENV 744
>UNIPROTKB|Q81M05 [details] [associations]
symbol:BAS4132 "Helicase, putative" species:1392 "Bacillus
anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:NP_846678.1 RefSeq:YP_021094.1 RefSeq:YP_030381.1
ProteinModelPortal:Q81M05 IntAct:Q81M05 DNASU:1087843
EnsemblBacteria:EBBACT00000013280 EnsemblBacteria:EBBACT00000014437
EnsemblBacteria:EBBACT00000019557 GeneID:1087843 GeneID:2817779
GeneID:2849652 KEGG:ban:BA_4450 KEGG:bar:GBAA_4450 KEGG:bat:BAS4132
HOGENOM:HOG000096814 OMA:TLQREVC ProtClustDB:CLSK872885
BioCyc:BANT260799:GJAJ-4188-MONOMER
BioCyc:BANT261594:GJ7F-4329-MONOMER Uniprot:Q81M05
Length = 560
Score = 133 (51.9 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 37/133 (27%), Positives = 65/133 (48%)
Query: 984 LESNKALPDKVIIFSQFLE---HIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD 1040
LE K + DKV+IF+++ ++ QQ ++ + F G + K ++F++
Sbjct: 365 LELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK---RGKKDWMKELFQNH 421
Query: 1041 ASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMR 1100
A L G G++L F + + + W+ EQ I R HR+G +H+ LA +
Sbjct: 422 AQVLIATEAGGE--GINLQFCSHMINYDLPWNPMRLEQRIGRIHRLGQKNDVHIYNLATK 479
Query: 1101 GTVEEQMLEFLQD 1113
TVEE +L+ L +
Sbjct: 480 HTVEEHILKLLYE 492
Score = 54 (24.1 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 35/167 (20%), Positives = 69/167 (41%)
Query: 656 SLAWDY-DVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714
S +W+ DV++++ + R ++ + + +++DE H L + N T + A
Sbjct: 139 SYSWEQADVIVSSIDTAKRSPHR---DIVLNLEYDLIIIDEAHKLKN--NKTKNYEFAQR 193
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR 774
L LLT ++ +L +LK H G + + AE +E
Sbjct: 194 LKKKFCLLLTATPVQNKI-DEIFNLVSLLKPGH---LGNQSNFEEYYASKNRSAESDED- 248
Query: 775 SRLLQLLHRCMISARK--TDLQTIPLCIKEVTFLNFTEEHAGTYNEL 819
L L+++ M+ R+ T + ++ + F+ F EE YN +
Sbjct: 249 --LKALINKVMVRNRRHNTGIDWPKRHVRTI-FVEFNEEEQDLYNNI 292
Score = 51 (23.0 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 228 MFCDEPGLGKTITALSLILK 247
+ DE GLGKTI A LILK
Sbjct: 80 ILADEVGLGKTIEA-GLILK 98
Score = 50 (22.7 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 26/114 (22%), Positives = 49/114 (42%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDY-DVVITTFNR 670
L + LI+VP+ LV W ++ F+ +K S +W+ DV++++ +
Sbjct: 105 LVKKVLILVPASLVSQWAYELNTK-------FFIPAVAQKKS---YSWEQADVIVSSIDT 154
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLT 724
R ++ + + +++DE H L + N T + A L LLT
Sbjct: 155 AKRSPHR---DIVLNLEYDLIIIDEAHKLKN--NKTKNYEFAQRLKKKFCLLLT 203
>TIGR_CMR|BA_4450 [details] [associations]
symbol:BA_4450 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:NP_846678.1 RefSeq:YP_021094.1 RefSeq:YP_030381.1
ProteinModelPortal:Q81M05 IntAct:Q81M05 DNASU:1087843
EnsemblBacteria:EBBACT00000013280 EnsemblBacteria:EBBACT00000014437
EnsemblBacteria:EBBACT00000019557 GeneID:1087843 GeneID:2817779
GeneID:2849652 KEGG:ban:BA_4450 KEGG:bar:GBAA_4450 KEGG:bat:BAS4132
HOGENOM:HOG000096814 OMA:TLQREVC ProtClustDB:CLSK872885
BioCyc:BANT260799:GJAJ-4188-MONOMER
BioCyc:BANT261594:GJ7F-4329-MONOMER Uniprot:Q81M05
Length = 560
Score = 133 (51.9 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 37/133 (27%), Positives = 65/133 (48%)
Query: 984 LESNKALPDKVIIFSQFLE---HIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD 1040
LE K + DKV+IF+++ ++ QQ ++ + F G + K ++F++
Sbjct: 365 LELIKEIDDKVVIFTEYRASQMYLQWFLQQHGISSVPFRGGFK---RGKKDWMKELFQNH 421
Query: 1041 ASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMR 1100
A L G G++L F + + + W+ EQ I R HR+G +H+ LA +
Sbjct: 422 AQVLIATEAGGE--GINLQFCSHMINYDLPWNPMRLEQRIGRIHRLGQKNDVHIYNLATK 479
Query: 1101 GTVEEQMLEFLQD 1113
TVEE +L+ L +
Sbjct: 480 HTVEEHILKLLYE 492
Score = 54 (24.1 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 35/167 (20%), Positives = 69/167 (41%)
Query: 656 SLAWDY-DVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS 714
S +W+ DV++++ + R ++ + + +++DE H L + N T + A
Sbjct: 139 SYSWEQADVIVSSIDTAKRSPHR---DIVLNLEYDLIIIDEAHKLKN--NKTKNYEFAQR 193
Query: 715 LTASNRWLLTGXXXXXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR 774
L LLT ++ +L +LK H G + + AE +E
Sbjct: 194 LKKKFCLLLTATPVQNKI-DEIFNLVSLLKPGH---LGNQSNFEEYYASKNRSAESDED- 248
Query: 775 SRLLQLLHRCMISARK--TDLQTIPLCIKEVTFLNFTEEHAGTYNEL 819
L L+++ M+ R+ T + ++ + F+ F EE YN +
Sbjct: 249 --LKALINKVMVRNRRHNTGIDWPKRHVRTI-FVEFNEEEQDLYNNI 292
Score = 51 (23.0 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 228 MFCDEPGLGKTITALSLILK 247
+ DE GLGKTI A LILK
Sbjct: 80 ILADEVGLGKTIEA-GLILK 98
Score = 50 (22.7 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 26/114 (22%), Positives = 49/114 (42%)
Query: 612 LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDY-DVVITTFNR 670
L + LI+VP+ LV W ++ F+ +K S +W+ DV++++ +
Sbjct: 105 LVKKVLILVPASLVSQWAYELNTK-------FFIPAVAQKKS---YSWEQADVIVSSIDT 154
Query: 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLT 724
R ++ + + +++DE H L + N T + A L LLT
Sbjct: 155 AKRSPHR---DIVLNLEYDLIIIDEAHKLKN--NKTKNYEFAQRLKKKFCLLLT 203
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 103 (41.3 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 24/113 (21%), Positives = 54/113 (47%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
+V++FSQ + + +++ + G + + + + ++ F + LL +
Sbjct: 365 RVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPIFVFLLSTRAG 424
Query: 1053 SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
+G++L+ V ++ ++ + Q +RAHR+G + + V L R TVEE
Sbjct: 425 GVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEE 477
Score = 86 (35.3 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 44/186 (23%), Positives = 82/186 (44%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA---HSLAWD--YDVVITTFNRL 671
LI+ P ++ +WK ++Q+ PG L + K+ A L + + V++TT+
Sbjct: 99 LILCPLSVLSNWKEEMQRFA-PG-LSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEIC 156
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
+ K P W +++DE H L + +L +K S+ S LLTG
Sbjct: 157 LKDASFLKSFP-----WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFS--LLLTGTPIQ-- 207
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE-AEME-EGRSRLLQLLHRCMISAR 789
+ L L +L F+ + + + + G ++ ++ E E E S L +LL ++
Sbjct: 208 --NSLQELYSLLSFVEPDLFSKEEV---GDFIQRYQDIEKESESASELHKLLQPFLLRRV 262
Query: 790 KTDLQT 795
K ++ T
Sbjct: 263 KAEVAT 268
Score = 58 (25.5 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 225 HGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWC 264
+G + DE GLGKT ++L + G L D +G +I C
Sbjct: 65 NGCILGDEMGLGKTCQTIALFIYLAGRLND--EGPFLILC 102
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 134 (52.2 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 31/119 (26%), Positives = 64/119 (53%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDG 1050
+V+IFSQ + ++++ + +++ G + + + +S + S+D F S + LL
Sbjct: 722 RVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTR 781
Query: 1051 SASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109
+ LG++L+ V + + W+ + Q ++RAHR+G ++V + TVEE +LE
Sbjct: 782 AGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILE 840
Score = 72 (30.4 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 45/213 (21%), Positives = 92/213 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITT----FNRL- 671
LIVVP V W+ + P L+ +T + + A+ +++ + + FN L
Sbjct: 443 LIVVPLSTVPAWQETLANWT-P-DLNSICYTGNTESRANIREYEFYLSTNSRKLKFNILL 500
Query: 672 -SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS-LTASNRWLLTGXXXX 729
+ E+ + K + + W + +DE H L +S + L +S +NR L+TG
Sbjct: 501 TTYEYILKDKQELNNIRWQYLAIDEAHRLKNS---ESSLYETLSQFRTANRLLITGTPLQ 557
Query: 730 XXXXSQLSHLQPMLKFLHE-EAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISA 788
+ L L ++ FL + Y +++ +D +P AE E L + L ++
Sbjct: 558 ----NNLKELASLVNFLMPGKFYIRDELNFD----QP-NAEQERDIRDLQERLQPFILRR 608
Query: 789 RKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELV 820
K D++ ++P + + + ++ Y ++
Sbjct: 609 LKKDVEKSLPSKSERILRVELSDMQTEWYKNIL 641
Score = 46 (21.3 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ + +
Sbjct: 411 GILADEMGLGKTVQTVCFL 429
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 135 (52.6 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 32/121 (26%), Positives = 63/121 (52%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + L F + + + ++LD F + S C LL
Sbjct: 805 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCF-LLS 863
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +G+VEE +L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 1109 E 1109
E
Sbjct: 924 E 924
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 40/195 (20%), Positives = 83/195 (42%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDY-DVVITTFNRLSAEW 675
L+VVP + W+ +IQ +++ + + + W + FN L +
Sbjct: 534 LLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTY 593
Query: 676 G--RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXX 733
+ K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 594 EILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPLQ---- 647
Query: 734 SQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHR----CMISAR 789
+ L L +L F+ E + +W+ FE E +GR LH+ ++
Sbjct: 648 NSLKELWSLLHFIMPEKFS----SWED-----FEEEHGKGREYGYASLHKELEPFLLRRV 698
Query: 790 KTDLQ-TIPLCIKEV 803
K D++ ++P ++++
Sbjct: 699 KKDVEKSLPAKVEQI 713
Score = 47 (21.6 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 503 ILADEMGLGKTIQTISFL 520
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 124 (48.7 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 30/135 (22%), Positives = 69/135 (51%)
Query: 976 KQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLD 1035
K ++ P L +L +K+++ S + + + ++EQ L + F+ + ++ + K ++
Sbjct: 518 KINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRSKLVN 577
Query: 1036 MFRHDASC-LALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHV 1094
F + + LL S +G++L +R+ L + W+ + + Q +SR HR G +P +
Sbjct: 578 QFNTNPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQSMSRIHRDGQLKPCFI 637
Query: 1095 ETLAMRGTVEEQMLE 1109
L G ++E++ +
Sbjct: 638 YRLFTTGCIDEKIFQ 652
Score = 65 (27.9 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 25/114 (21%), Positives = 52/114 (45%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTD---HKKPSAHSLAW--DYDVVITTFNRL 671
L+V P L+ +W+ + ++ + +L++ + ++K + Y V++ + +L
Sbjct: 259 LVVCPVTLISNWRQEFRKWLGANKLNVLTLNNPMSNEKQDILNFGKLNVYQVLVVNYEKL 318
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTG 725
A + + V + ++ DEGH L +S N L I L + +LTG
Sbjct: 319 VAHFDE-----LSAVKFDLLVCDEGHRLKNSANKV--LNNLIKLNIPKKIVLTG 365
Score = 55 (24.4 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 225 HGGMFCDEPGLGKTITALSLI 245
HG + DE GLGKT+ ++ I
Sbjct: 219 HGCLLADEMGLGKTLMTITTI 239
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 123 (48.4 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 28/125 (22%), Positives = 60/125 (48%)
Query: 987 NKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCL 1044
NK DK+++ S + + + +IE+ + M+ + + K +D F + +
Sbjct: 618 NKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQKLVDKFNDPNGPEFI 677
Query: 1045 ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
LL + G++L R+ LM+P W+ + ++Q ++R R G + + GT+E
Sbjct: 678 FLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIE 737
Query: 1105 EQMLE 1109
E++ +
Sbjct: 738 EKIFQ 742
Score = 72 (30.4 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 58/234 (24%), Positives = 91/234 (38%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLH-LFVWTDHKKPSAHSLA---WDYDV---VITTFN 669
+IV PS LV +W +I + + G L L V K S A W ++
Sbjct: 318 IIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKNSELGTALQQWSTAQGRNIVRPVL 377
Query: 670 RLSAEWGRRKKSPMMQVHWLRVMLDEGHTL--GSSLNLTNKLQMAISLTASNRWLLTGXX 727
+S E RR + ++ DEGH L G SL T L SL R +L+G
Sbjct: 378 IISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDSLTFT-ALN---SLRCERRVILSGTP 433
Query: 728 XXXXXXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEA-----EMEEGRSRLLQ 779
+ LS +L F + G +K ++ IL+ ++ E E+G +L +
Sbjct: 434 IQ----NDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNE 489
Query: 780 LLHRC--MISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILM 829
L I R D+ + +P+ + V F + YN + + LM
Sbjct: 490 LSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNHFITSPEIKKLM 543
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
G + DE GLGKT+ L+L+
Sbjct: 281 GCIMADEMGLGKTLQCLTLM 300
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 375 DEESNICNDRNAKGNSTAKKRANSSRQVPK 404
D+E ND+N G+ KR +P+
Sbjct: 83 DDEEEYNNDQNVNGDGQIIKRKKFGALLPR 112
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 123 (48.4 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 28/125 (22%), Positives = 60/125 (48%)
Query: 987 NKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR--HDASCL 1044
NK DK+++ S + + + +IE+ + M+ + + K +D F + +
Sbjct: 618 NKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQKLVDKFNDPNGPEFI 677
Query: 1045 ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104
LL + G++L R+ LM+P W+ + ++Q ++R R G + + GT+E
Sbjct: 678 FLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIE 737
Query: 1105 EQMLE 1109
E++ +
Sbjct: 738 EKIFQ 742
Score = 72 (30.4 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 58/234 (24%), Positives = 91/234 (38%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLH-LFVWTDHKKPSAHSLA---WDYDV---VITTFN 669
+IV PS LV +W +I + + G L L V K S A W ++
Sbjct: 318 IIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKNSELGTALQQWSTAQGRNIVRPVL 377
Query: 670 RLSAEWGRRKKSPMMQVHWLRVMLDEGHTL--GSSLNLTNKLQMAISLTASNRWLLTGXX 727
+S E RR + ++ DEGH L G SL T L SL R +L+G
Sbjct: 378 IISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDSLTFT-ALN---SLRCERRVILSGTP 433
Query: 728 XXXXXXSQLSHLQPMLKFLHEEAYGQN---QKAWDGGILRPFEA-----EMEEGRSRLLQ 779
+ LS +L F + G +K ++ IL+ ++ E E+G +L +
Sbjct: 434 IQ----NDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNE 489
Query: 780 LLHRC--MISARKTDLQT--IPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILM 829
L I R D+ + +P+ + V F + YN + + LM
Sbjct: 490 LSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNHFITSPEIKKLM 543
Score = 50 (22.7 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 226 GGMFCDEPGLGKTITALSLI 245
G + DE GLGKT+ L+L+
Sbjct: 281 GCIMADEMGLGKTLQCLTLM 300
Score = 44 (20.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 375 DEESNICNDRNAKGNSTAKKRANSSRQVPK 404
D+E ND+N G+ KR +P+
Sbjct: 83 DDEEEYNNDQNVNGDGQIIKRKKFGALLPR 112
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 137 (53.3 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 38/140 (27%), Positives = 73/140 (52%)
Query: 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-DMF-----RHDA 1041
K+ +V+I+SQ I ++E+ + K Y + S+KI DM R+D
Sbjct: 1124 KSQGHRVLIYSQMTRMIDLLEEYMVYR--KHT--YMRLDGSSKISERRDMVADFQTRNDI 1179
Query: 1042 SCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101
LL + LG++L+ V + W+ ++++Q + RAHR+G T+ + V L +G
Sbjct: 1180 FVF-LLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKG 1238
Query: 1102 TVEEQMLEFLQDTDRCRRLL 1121
T+EE++L+ ++ +R++
Sbjct: 1239 TIEERILQRAKEKSEIQRMV 1258
Score = 62 (26.9 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXXXXS--QLSH-LQP 741
+V W ++LDE L SS ++ K+ + NR LLTG L H + P
Sbjct: 652 RVKWQYMVLDEAQALKSSSSVRWKI--LLQFQCRNRLLLTGTPIQNTMAELWALLHFIMP 709
Query: 742 MLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGR-SRLLQLLHRCMISARKTDLQ 794
L HEE K + ++ ++E + SRL +L M+ K D++
Sbjct: 710 TLFDSHEEFNEWFSKDIESHAEN--KSAIDENQLSRLHMILKPFMLRRIKKDVE 761
Score = 54 (24.1 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 227 GMFCDEPGLGKTITALSLI 245
G+ DE GLGKT+ +++L+
Sbjct: 548 GILADEMGLGKTVQSIALL 566
Score = 45 (20.9 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 50/275 (18%), Positives = 105/275 (38%)
Query: 747 HEEAYGQNQKAWDGGILRPF-----EAEMEEGRSRLLQLLHRCMISARKTDL-QTIPLCI 800
++ A +NQ + IL+PF + ++E S +++L C +++R+ L Q +
Sbjct: 732 NKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALK--- 788
Query: 801 KEVTFLNFTEEHAGTYNELVVTVRR--NILMADWNDPSHVESLLNPKQWKFRSTTIRNLR 858
+++ + + G+ + T N++M +H E + W +++ +
Sbjct: 789 NKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYQ 848
Query: 859 LSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCV 918
+S + H ++ + VL+ Q+ F + + N +C + +D
Sbjct: 849 ISKFIYRHGQIRVFNHSRDRWLRVLLSPFAPDYIQQSLFHRKGV-NEESCFSFLRFIDVS 907
Query: 919 AMDSEKCSLPG--CGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLK 976
+ L G +L S + R W P+ E Q Y + + +
Sbjct: 908 PAEMANLMLQGLLARWLALFLSLKASYRLHQLR-SWGEPEG--ESQEKYLRNKDFLLGVN 964
Query: 977 QDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQL 1011
L PNL S L K ++FS + + Q+
Sbjct: 965 FPLSFPNLSSCPLL--KSLVFSSHCKAVSGYSDQV 997
>UNIPROTKB|Q9NW36 [details] [associations]
symbol:HELLS "cDNA FLJ10339 fis, clone NT2RM2000740, weakly
similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL138759 UniGene:Hs.655830
HGNC:HGNC:4861 ChiTaRS:HELLS EMBL:AK001201 IPI:IPI00012073
SMR:Q9NW36 STRING:Q9NW36 Ensembl:ENST00000371327
HOGENOM:HOG000198825 HOVERGEN:HBG072129 Uniprot:Q9NW36
Length = 310
Score = 140 (54.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 36/142 (25%), Positives = 66/142 (46%)
Query: 969 SNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSS 1028
+N+ FL D P L K KV++FSQ + ++ + F+ + M S
Sbjct: 33 TNSGKFLILDRMLPEL---KKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYS 89
Query: 1029 NKIKSLDMFRHDASCLALLMDGSAS-LGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087
+ K++ F D L+ A LG++L+ V + + W+ + Q R HR+G
Sbjct: 90 EREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 149
Query: 1088 ATRPIHVETLAMRGTVEEQMLE 1109
T+P+ V L T++++++E
Sbjct: 150 QTKPVVVYRLVTANTIDQKIVE 171
Score = 44 (20.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 883 LVENGLDPLSQEYAFIKYNLLNGGNCL 909
L+E +DP++QE+ + + N G L
Sbjct: 13 LIEYPIDPVTQEFKIDEELVTNSGKFL 39
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 102 (41.0 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSA 1052
+V++FSQ + + +++ L G + + + + ++ F LL +
Sbjct: 367 RVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQPIFTFLLSTRAG 426
Query: 1053 SLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105
+G++L+ V + ++ + Q +RAHR+G + + V L R TVEE
Sbjct: 427 GVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEE 479
Score = 86 (35.3 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 44/185 (23%), Positives = 80/185 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA---HSLAWD--YDVVITTFNRL 671
LI+ P ++ +WK ++++ PG L + K A L + + V++TT+
Sbjct: 101 LILCPLSVLSNWKEEMERFA-PG-LSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEIC 158
Query: 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXXXXX 731
+ K P W +++DE H L + +L +K S+ S LLTG
Sbjct: 159 LKDASFLKSFP-----WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFS--LLLTGTPIQ-- 209
Query: 732 XXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEME-EGRSRLLQLLHRCMISARK 790
+ L L +L F+ + + + Q + + R + E E E S L +LL ++ K
Sbjct: 210 --NSLQELYSLLSFVEPDLFSKEQV--EDFVQRYQDIEKESESASELYKLLQPFLLRRVK 265
Query: 791 TDLQT 795
++ T
Sbjct: 266 AEVAT 270
Score = 58 (25.5 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 225 HGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVKIIWC 264
+G + DE GLGKT ++L + G L D +G +I C
Sbjct: 67 NGCILGDEMGLGKTCQTIALFIYLAGRLND--EGPFLILC 104
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 135 (52.6 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 32/121 (26%), Positives = 63/121 (52%)
Query: 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS---CLALLM 1048
++V+IFSQ + + ++ + L F + + + ++LD F + S C LL
Sbjct: 804 NRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCF-LLS 862
Query: 1049 DGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108
+ LG++L+ V + + W+ + Q +RAHR+G + +++ L +G+VEE +L
Sbjct: 863 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 922
Query: 1109 E 1109
E
Sbjct: 923 E 923
Score = 72 (30.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 40/200 (20%), Positives = 87/200 (43%)
Query: 617 LIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAW--------DYDVVITTF 668
L+VVP + W+ +IQ +++ + + + W +++++TT+
Sbjct: 533 LLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTY 592
Query: 669 NRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGXXX 728
L + K+ + ++W + +DE H L + +L K I +++R L+TG
Sbjct: 593 EILLKD-----KAFLGGLNWAFIGVDEAHRLKNDDSLLYKT--LIDFKSNHRLLITGTPL 645
Query: 729 XXXXXSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHR----C 784
+ L L +L F+ E + +W+ FE E +GR LH+
Sbjct: 646 Q----NSLKELWSLLHFIMPEKFS----SWED-----FEEEHGKGREYGYASLHKELEPF 692
Query: 785 MISARKTDLQ-TIPLCIKEV 803
++ K D++ ++P ++++
Sbjct: 693 LLRRVKKDVEKSLPAKVEQI 712
Score = 47 (21.6 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 228 MFCDEPGLGKTITALSLI 245
+ DE GLGKTI +S +
Sbjct: 502 ILADEMGLGKTIQTISFL 519
WARNING: HSPs involving 128 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1158 1123 0.00090 123 3 11 22 0.37 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 378
No. of states in DFA: 639 (68 KB)
Total size of DFA: 611 KB (2270 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 89.48u 0.14s 89.62t Elapsed: 00:00:04
Total cpu time: 89.54u 0.15s 89.69t Elapsed: 00:00:04
Start: Fri May 10 06:40:40 2013 End: Fri May 10 06:40:44 2013
WARNINGS ISSUED: 2