Query 001095
Match_columns 1158
No_of_seqs 551 out of 3402
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 15:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385 Chromatin remodeling c 100.0 3.4E-82 7.3E-87 730.3 34.6 442 560-1125 166-623 (971)
2 KOG0387 Transcription-coupled 100.0 1.1E-78 2.3E-83 705.6 38.5 420 582-1121 220-678 (923)
3 KOG1002 Nucleotide excision re 100.0 7.6E-79 1.6E-83 670.7 30.3 534 562-1142 185-785 (791)
4 KOG0389 SNF2 family DNA-depend 100.0 2.5E-78 5.3E-83 701.4 31.7 505 562-1146 400-930 (941)
5 KOG0392 SNF2 family DNA-depend 100.0 2E-76 4.2E-81 706.9 33.0 469 559-1125 973-1478(1549)
6 KOG0384 Chromodomain-helicase 100.0 4.3E-74 9.3E-79 691.5 32.9 461 561-1142 370-852 (1373)
7 PLN03142 Probable chromatin-re 100.0 7.7E-73 1.7E-77 709.1 39.6 441 560-1126 168-624 (1033)
8 KOG0391 SNF2 family DNA-depend 100.0 1.4E-73 3E-78 672.5 25.7 547 558-1147 612-1431(1958)
9 KOG0388 SNF2 family DNA-depend 100.0 2.3E-72 5E-77 638.7 31.2 511 562-1124 568-1177(1185)
10 KOG4439 RNA polymerase II tran 100.0 7.3E-72 1.6E-76 639.2 34.4 493 585-1142 344-895 (901)
11 KOG0386 Chromatin remodeling c 100.0 3E-66 6.4E-71 613.4 19.2 448 559-1128 392-865 (1157)
12 KOG0390 DNA repair protein, SN 100.0 4.2E-63 9.1E-68 594.2 34.4 465 558-1129 235-735 (776)
13 KOG1015 Transcription regulato 100.0 8.4E-60 1.8E-64 548.5 28.4 535 560-1124 667-1300(1567)
14 KOG1001 Helicase-like transcri 100.0 4.4E-59 9.6E-64 564.8 22.3 479 584-1118 150-667 (674)
15 COG0553 HepA Superfamily II DN 100.0 8.9E-55 1.9E-59 565.3 31.8 467 560-1124 337-845 (866)
16 KOG1000 Chromatin remodeling p 100.0 1.2E-50 2.7E-55 449.2 31.5 408 560-1116 197-618 (689)
17 KOG0298 DEAD box-containing he 100.0 1.8E-51 3.9E-56 498.3 19.5 263 589-867 377-691 (1394)
18 PRK04914 ATP-dependent helicas 100.0 2.5E-49 5.4E-54 496.3 32.0 402 562-1117 153-621 (956)
19 KOG1016 Predicted DNA helicase 100.0 2.8E-49 6.1E-54 452.8 26.6 517 559-1126 252-874 (1387)
20 PF00176 SNF2_N: SNF2 family N 100.0 2.1E-37 4.6E-42 352.0 19.7 262 585-866 24-298 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 9.3E-33 2E-37 336.4 34.5 346 561-1109 255-615 (732)
22 KOG0383 Predicted helicase [Ge 100.0 1E-34 2.2E-39 347.1 7.5 368 559-1055 293-696 (696)
23 PRK13766 Hef nuclease; Provisi 100.0 2.5E-27 5.3E-32 303.5 33.3 451 562-1115 16-493 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 1.4E-20 3.1E-25 213.8 36.1 434 596-1116 35-496 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 4.9E-21 1.1E-25 228.3 31.2 365 559-1112 34-405 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 5.8E-20 1.3E-24 223.2 33.5 113 990-1103 343-457 (501)
27 KOG1123 RNA polymerase II tran 99.8 2.4E-20 5.3E-25 208.6 19.8 344 558-1105 299-657 (776)
28 PTZ00110 helicase; Provisional 99.8 8.6E-17 1.9E-21 197.1 30.3 109 990-1101 376-484 (545)
29 PRK10590 ATP-dependent RNA hel 99.8 6.3E-17 1.4E-21 195.0 28.2 119 990-1113 244-362 (456)
30 PRK11776 ATP-dependent RNA hel 99.8 1.8E-16 4E-21 191.6 31.0 109 990-1101 241-349 (460)
31 PRK11192 ATP-dependent RNA hel 99.8 7.9E-17 1.7E-21 193.4 27.6 104 990-1094 244-347 (434)
32 TIGR00614 recQ_fam ATP-depende 99.8 3.6E-17 7.8E-22 197.7 23.6 105 990-1095 225-329 (470)
33 PLN00206 DEAD-box ATP-dependen 99.8 1.3E-16 2.9E-21 194.7 28.4 107 992-1101 368-475 (518)
34 PRK04537 ATP-dependent RNA hel 99.8 2E-16 4.3E-21 194.6 29.7 108 990-1100 256-363 (572)
35 PRK04837 ATP-dependent RNA hel 99.8 1.7E-16 3.7E-21 189.8 28.1 109 990-1101 254-362 (423)
36 PRK01297 ATP-dependent RNA hel 99.7 7.4E-16 1.6E-20 186.9 29.7 109 990-1101 334-442 (475)
37 PRK11057 ATP-dependent DNA hel 99.7 9.3E-16 2E-20 190.5 27.6 104 990-1094 235-338 (607)
38 PRK11634 ATP-dependent RNA hel 99.7 6.3E-15 1.4E-19 182.5 31.5 104 990-1094 244-347 (629)
39 TIGR01389 recQ ATP-dependent D 99.7 2E-15 4.4E-20 187.8 27.0 103 991-1094 224-326 (591)
40 PTZ00424 helicase 45; Provisio 99.7 3.2E-15 6.9E-20 177.8 27.0 108 991-1101 267-374 (401)
41 KOG0354 DEAD-box like helicase 99.7 2.6E-14 5.7E-19 172.2 32.5 430 562-1099 63-527 (746)
42 TIGR00643 recG ATP-dependent D 99.7 1.3E-14 2.8E-19 181.1 28.1 87 1006-1093 471-560 (630)
43 TIGR00580 mfd transcription-re 99.6 1.7E-14 3.7E-19 183.8 27.7 108 990-1100 659-769 (926)
44 PLN03137 ATP-dependent DNA hel 99.6 1.3E-14 2.8E-19 182.1 24.7 104 991-1095 680-783 (1195)
45 PRK11448 hsdR type I restricti 99.6 2.6E-14 5.7E-19 185.1 28.4 105 991-1097 698-814 (1123)
46 PRK10917 ATP-dependent DNA hel 99.6 3.3E-14 7.1E-19 178.6 25.6 87 1006-1093 494-583 (681)
47 KOG0331 ATP-dependent RNA heli 99.6 3.9E-14 8.4E-19 166.1 23.9 106 988-1094 338-443 (519)
48 PRK10689 transcription-repair 99.6 3.9E-14 8.4E-19 184.3 23.8 102 991-1093 809-913 (1147)
49 PRK13767 ATP-dependent helicas 99.6 5.4E-13 1.2E-17 171.7 28.4 106 990-1096 283-395 (876)
50 cd00079 HELICc Helicase superf 99.5 3.7E-14 8.1E-19 140.3 10.7 105 990-1095 27-131 (131)
51 PF07496 zf-CW: CW-type Zinc F 99.5 2.7E-15 5.9E-20 122.1 1.7 47 433-479 1-50 (50)
52 PRK02362 ski2-like helicase; P 99.5 1.2E-12 2.6E-17 166.8 25.8 83 1017-1100 305-396 (737)
53 COG0513 SrmB Superfamily II DN 99.5 2.8E-12 6E-17 156.1 27.1 119 992-1114 274-392 (513)
54 TIGR03817 DECH_helic helicase/ 99.5 1E-11 2.2E-16 157.1 30.5 116 991-1109 271-394 (742)
55 TIGR01587 cas3_core CRISPR-ass 99.5 2.2E-12 4.8E-17 151.1 22.9 116 990-1109 221-349 (358)
56 KOG0330 ATP-dependent RNA heli 99.5 2.1E-12 4.4E-17 142.7 20.3 114 988-1104 297-410 (476)
57 PRK01172 ski2-like helicase; P 99.5 1.3E-11 2.9E-16 156.1 30.8 72 1018-1091 288-368 (674)
58 KOG0387 Transcription-coupled 99.5 1.2E-14 2.5E-19 172.2 2.0 84 158-280 196-291 (923)
59 PF00271 Helicase_C: Helicase 99.5 9.7E-14 2.1E-18 125.2 6.5 78 1009-1087 1-78 (78)
60 KOG4439 RNA polymerase II tran 99.4 4.1E-14 8.9E-19 165.2 3.3 78 162-277 321-419 (901)
61 TIGR00348 hsdR type I site-spe 99.4 1.8E-11 3.9E-16 153.5 26.4 158 560-731 237-406 (667)
62 PRK00254 ski2-like helicase; P 99.4 3.1E-11 6.7E-16 153.6 28.0 125 598-728 47-180 (720)
63 KOG0392 SNF2 family DNA-depend 99.4 3.7E-14 8E-19 173.5 0.1 118 103-266 918-1049(1549)
64 PRK09200 preprotein translocas 99.4 1.6E-10 3.5E-15 143.9 29.9 116 989-1112 426-549 (790)
65 TIGR03714 secA2 accessory Sec 99.4 9.9E-11 2.1E-15 144.4 25.9 114 988-1110 421-543 (762)
66 KOG0350 DEAD-box ATP-dependent 99.3 3.8E-11 8.3E-16 136.3 20.1 117 988-1109 426-546 (620)
67 KOG1002 Nucleotide excision re 99.3 5.1E-13 1.1E-17 150.2 3.6 79 162-278 180-267 (791)
68 TIGR00595 priA primosomal prot 99.3 8.7E-11 1.9E-15 142.4 23.2 95 1004-1099 271-381 (505)
69 TIGR02621 cas3_GSU0051 CRISPR- 99.3 1.7E-10 3.8E-15 143.7 25.8 103 990-1097 271-390 (844)
70 KOG0328 Predicted ATP-dependen 99.3 8.2E-11 1.8E-15 124.9 19.3 109 992-1103 267-375 (400)
71 COG1201 Lhr Lhr-like helicases 99.3 1.9E-10 4.2E-15 142.5 25.4 114 991-1109 253-368 (814)
72 COG1200 RecG RecG-like helicas 99.3 2.4E-10 5.3E-15 136.5 25.0 75 1015-1090 507-582 (677)
73 smart00490 HELICc helicase sup 99.3 5E-12 1.1E-16 114.2 8.4 81 1006-1087 2-82 (82)
74 PRK09751 putative ATP-dependen 99.3 2.4E-10 5.2E-15 150.1 26.8 96 990-1086 243-371 (1490)
75 KOG0335 ATP-dependent RNA heli 99.3 1.4E-10 3E-15 134.4 20.1 123 990-1113 336-458 (482)
76 PRK12898 secA preprotein trans 99.3 8.6E-10 1.9E-14 134.7 28.0 115 990-1112 472-594 (656)
77 KOG0336 ATP-dependent RNA heli 99.3 2.8E-10 6E-15 126.1 21.0 123 988-1113 462-586 (629)
78 TIGR00963 secA preprotein tran 99.3 7.7E-11 1.7E-15 144.5 18.5 104 988-1094 402-512 (745)
79 PRK05580 primosome assembly pr 99.3 5.2E-10 1.1E-14 140.5 26.1 100 999-1099 434-549 (679)
80 KOG0385 Chromatin remodeling c 99.3 1.4E-12 3E-17 154.0 2.0 75 162-275 162-249 (971)
81 KOG0391 SNF2 family DNA-depend 99.2 1.6E-12 3.4E-17 157.5 1.8 79 159-276 607-698 (1958)
82 KOG0333 U5 snRNP-like RNA heli 99.2 5.5E-10 1.2E-14 127.7 21.9 109 990-1101 516-624 (673)
83 TIGR03158 cas3_cyano CRISPR-as 99.2 1E-09 2.2E-14 128.2 24.4 85 990-1084 271-357 (357)
84 KOG0386 Chromatin remodeling c 99.2 8.8E-12 1.9E-16 151.2 4.3 97 146-281 373-481 (1157)
85 KOG0389 SNF2 family DNA-depend 99.2 5.2E-12 1.1E-16 149.9 1.8 72 165-275 398-480 (941)
86 COG0514 RecQ Superfamily II DN 99.2 1.1E-09 2.4E-14 131.3 21.0 112 990-1104 229-340 (590)
87 PLN03142 Probable chromatin-re 99.2 1.3E-11 2.7E-16 157.7 3.3 66 162-266 165-237 (1033)
88 KOG0348 ATP-dependent RNA heli 99.1 1.7E-09 3.7E-14 123.8 18.7 123 988-1115 422-566 (708)
89 PHA02653 RNA helicase NPH-II; 99.1 5.5E-09 1.2E-13 129.6 24.8 111 990-1105 394-518 (675)
90 PF04851 ResIII: Type III rest 99.1 3.8E-10 8.2E-15 118.5 12.1 155 562-728 4-183 (184)
91 KOG0388 SNF2 family DNA-depend 99.1 1.4E-11 3E-16 143.5 1.1 76 162-276 563-650 (1185)
92 TIGR01970 DEAH_box_HrpB ATP-de 99.1 8.6E-09 1.9E-13 130.9 25.1 108 991-1102 209-337 (819)
93 KOG4284 DEAD box protein [Tran 99.1 9.9E-10 2.1E-14 127.8 14.8 109 990-1101 271-379 (980)
94 cd00046 DEXDc DEAD-like helica 99.1 4.4E-10 9.6E-15 111.4 10.6 126 598-727 8-144 (144)
95 KOG0343 RNA Helicase [RNA proc 99.1 7.8E-09 1.7E-13 118.9 20.1 122 990-1115 312-435 (758)
96 KOG0338 ATP-dependent RNA heli 99.1 3.5E-09 7.6E-14 120.7 16.9 114 991-1109 426-539 (691)
97 KOG0339 ATP-dependent RNA heli 99.0 1.7E-08 3.8E-13 114.9 22.2 112 990-1104 467-578 (731)
98 PRK11664 ATP-dependent RNA hel 99.0 1.2E-08 2.7E-13 129.7 23.4 109 991-1103 212-341 (812)
99 KOG0345 ATP-dependent RNA heli 99.0 1.4E-08 3E-13 115.3 20.2 107 988-1095 252-360 (567)
100 KOG0326 ATP-dependent RNA heli 99.0 1.3E-08 2.7E-13 110.2 18.5 106 992-1100 323-428 (459)
101 smart00487 DEXDc DEAD-like hel 99.0 2.2E-09 4.7E-14 113.3 12.8 153 562-731 9-174 (201)
102 PRK09401 reverse gyrase; Revie 99.0 1.7E-08 3.7E-13 132.5 23.0 87 992-1084 329-429 (1176)
103 KOG0347 RNA helicase [RNA proc 99.0 7.2E-09 1.6E-13 119.2 17.0 130 991-1123 463-613 (731)
104 PRK13104 secA preprotein trans 99.0 3.2E-08 7E-13 123.4 23.8 116 987-1110 440-593 (896)
105 COG4096 HsdR Type I site-speci 99.0 2.1E-08 4.5E-13 121.6 21.2 106 991-1098 426-545 (875)
106 KOG0340 ATP-dependent RNA heli 99.0 1.7E-08 3.7E-13 111.0 18.5 100 990-1090 253-352 (442)
107 COG1204 Superfamily II helicas 99.0 1.8E-08 3.9E-13 126.7 21.4 148 586-751 47-205 (766)
108 COG1197 Mfd Transcription-repa 99.0 4.7E-08 1E-12 123.3 23.8 108 990-1100 802-912 (1139)
109 KOG0342 ATP-dependent RNA heli 99.0 1.6E-08 3.6E-13 115.6 17.5 100 991-1091 330-429 (543)
110 PRK12906 secA preprotein trans 98.9 7E-08 1.5E-12 119.9 23.6 104 988-1094 437-548 (796)
111 PF00176 SNF2_N: SNF2 family N 98.9 3.2E-10 6.9E-15 129.0 2.7 67 170-266 1-76 (299)
112 PRK12904 preprotein translocas 98.8 6.6E-07 1.4E-11 111.8 26.7 115 988-1110 427-579 (830)
113 KOG0384 Chromodomain-helicase 98.8 6E-10 1.3E-14 138.1 -0.4 73 165-276 369-451 (1373)
114 COG1205 Distinct helicase fami 98.8 2.2E-07 4.8E-12 118.6 22.0 119 989-1110 304-431 (851)
115 KOG0390 DNA repair protein, SN 98.8 2E-09 4.4E-14 131.9 3.1 79 155-266 227-316 (776)
116 PRK14701 reverse gyrase; Provi 98.8 2.6E-07 5.7E-12 124.2 23.1 93 991-1089 330-446 (1638)
117 TIGR01054 rgy reverse gyrase. 98.8 1.5E-07 3.2E-12 124.0 20.3 74 992-1070 327-408 (1171)
118 KOG1000 Chromatin remodeling p 98.8 1.7E-09 3.7E-14 122.7 1.5 167 42-266 63-259 (689)
119 PRK09694 helicase Cas3; Provis 98.8 3.1E-07 6.7E-12 117.0 21.7 98 989-1089 558-665 (878)
120 PRK12900 secA preprotein trans 98.8 2.9E-06 6.2E-11 106.5 29.3 116 988-1111 595-718 (1025)
121 KOG0346 RNA helicase [RNA proc 98.7 2E-07 4.2E-12 105.2 16.1 107 992-1101 269-410 (569)
122 PRK13107 preprotein translocas 98.7 1.2E-06 2.7E-11 109.2 24.4 115 988-1110 446-597 (908)
123 KOG0952 DNA/RNA helicase MER3/ 98.7 2.3E-06 4.9E-11 105.8 23.3 163 582-762 122-310 (1230)
124 KOG0341 DEAD-box protein abstr 98.6 8.6E-08 1.9E-12 106.0 9.4 120 988-1110 418-537 (610)
125 COG4889 Predicted helicase [Ge 98.6 2.8E-07 6E-12 110.7 14.2 92 999-1090 479-576 (1518)
126 PRK11131 ATP-dependent RNA hel 98.6 3.4E-06 7.4E-11 110.0 23.5 109 990-1104 285-414 (1294)
127 KOG0332 ATP-dependent RNA heli 98.6 4.6E-07 1E-11 100.5 12.2 106 992-1100 331-442 (477)
128 COG1202 Superfamily II helicas 98.6 9E-06 2E-10 94.7 22.9 119 992-1112 441-573 (830)
129 TIGR01967 DEAH_box_HrpA ATP-de 98.5 3.9E-06 8.4E-11 109.8 22.1 109 991-1105 279-408 (1283)
130 cd00268 DEADc DEAD-box helicas 98.5 1E-06 2.2E-11 94.5 13.3 151 562-729 22-186 (203)
131 COG0556 UvrB Helicase subunit 98.4 3.1E-05 6.7E-10 90.1 23.0 122 988-1111 443-569 (663)
132 KOG0334 RNA helicase [RNA proc 98.4 3.9E-06 8.4E-11 104.6 16.3 108 990-1100 612-719 (997)
133 PF00270 DEAD: DEAD/DEAH box h 98.4 1.1E-06 2.4E-11 91.0 9.6 129 598-731 22-165 (169)
134 PRK12326 preprotein translocas 98.4 4.5E-05 9.7E-10 93.6 23.9 117 988-1112 424-555 (764)
135 PRK05298 excinuclease ABC subu 98.3 4.1E-06 8.9E-11 105.2 14.8 109 988-1100 443-556 (652)
136 TIGR00631 uvrb excinuclease AB 98.3 3.4E-06 7.4E-11 105.3 13.4 111 988-1102 439-554 (655)
137 KOG0351 ATP-dependent DNA heli 98.3 3.8E-06 8.2E-11 107.0 13.6 109 988-1097 482-590 (941)
138 COG0553 HepA Superfamily II DN 98.3 1.5E-07 3.2E-12 123.3 1.1 67 162-266 334-408 (866)
139 KOG1015 Transcription regulato 98.3 7.2E-08 1.6E-12 116.3 -2.5 75 162-266 664-746 (1567)
140 PRK04914 ATP-dependent helicas 98.2 4.9E-07 1.1E-11 115.9 3.3 64 162-266 148-217 (956)
141 COG1203 CRISPR-associated heli 98.2 3.4E-05 7.3E-10 98.4 19.3 124 988-1115 437-566 (733)
142 KOG0327 Translation initiation 98.2 5.5E-06 1.2E-10 93.0 9.3 114 991-1109 263-376 (397)
143 PF13871 Helicase_C_4: Helicas 98.2 4E-06 8.6E-11 92.8 7.9 93 1032-1125 52-152 (278)
144 PF13872 AAA_34: P-loop contai 98.2 2.8E-05 6.1E-10 86.5 14.5 237 558-818 34-302 (303)
145 PRK12899 secA preprotein trans 98.1 0.001 2.2E-08 84.0 28.7 116 988-1111 565-688 (970)
146 COG1198 PriA Primosomal protei 98.1 7.1E-05 1.5E-09 93.2 18.4 96 1005-1101 494-605 (730)
147 PF11496 HDA2-3: Class II hist 98.1 4.1E-05 8.8E-10 86.6 14.7 232 800-1114 4-258 (297)
148 KOG0951 RNA helicase BRR2, DEA 98.1 9.1E-05 2E-09 93.2 18.6 100 1015-1115 607-729 (1674)
149 KOG0344 ATP-dependent RNA heli 98.0 2.4E-05 5.2E-10 92.2 10.8 106 992-1100 388-494 (593)
150 TIGR00596 rad1 DNA repair prot 98.0 0.00047 1E-08 87.7 22.5 84 660-748 7-91 (814)
151 PRK13103 secA preprotein trans 98.0 0.00073 1.6E-08 85.2 23.7 106 987-1095 445-587 (913)
152 COG4098 comFA Superfamily II D 97.9 0.0011 2.3E-08 73.9 20.8 106 988-1096 302-413 (441)
153 KOG1001 Helicase-like transcri 97.9 7.4E-06 1.6E-10 101.6 4.4 55 223-277 151-224 (674)
154 PRK12903 secA preprotein trans 97.8 0.0033 7E-08 78.8 24.4 117 988-1112 423-547 (925)
155 COG0610 Type I site-specific r 97.7 0.0012 2.7E-08 86.1 21.1 137 584-731 271-417 (962)
156 KOG0349 Putative DEAD-box RNA 97.7 0.00011 2.4E-09 83.0 8.8 97 988-1085 502-601 (725)
157 KOG0953 Mitochondrial RNA heli 97.7 0.00016 3.5E-09 84.5 10.5 110 987-1099 354-475 (700)
158 PF07652 Flavi_DEAD: Flaviviru 97.7 0.00028 6.1E-09 70.3 10.5 121 597-731 11-140 (148)
159 COG1110 Reverse gyrase [DNA re 97.6 0.015 3.2E-07 73.3 25.0 75 990-1070 334-416 (1187)
160 KOG1016 Predicted DNA helicase 97.5 3.4E-06 7.4E-11 100.2 -6.2 90 159-278 247-342 (1387)
161 KOG0383 Predicted helicase [Ge 97.3 4.5E-05 9.7E-10 93.6 -0.3 65 165-268 294-365 (696)
162 TIGR00603 rad25 DNA repair hel 97.3 0.00018 4E-09 89.8 3.8 63 164-266 253-317 (732)
163 PF02399 Herpes_ori_bp: Origin 97.2 0.014 3.1E-07 72.8 19.2 100 988-1095 279-384 (824)
164 PRK12901 secA preprotein trans 97.2 0.031 6.8E-07 71.4 22.1 105 988-1095 625-737 (1112)
165 CHL00122 secA preprotein trans 96.8 0.11 2.4E-06 65.9 22.1 69 987-1057 420-489 (870)
166 KOG0337 ATP-dependent RNA heli 96.5 0.0032 7E-08 71.8 5.2 108 991-1101 261-368 (529)
167 PRK12902 secA preprotein trans 96.1 0.67 1.4E-05 59.1 22.7 68 988-1057 436-504 (939)
168 KOG0352 ATP-dependent DNA heli 96.0 0.013 2.9E-07 66.8 6.9 109 993-1104 257-365 (641)
169 KOG0298 DEAD box-containing he 96.0 0.0026 5.6E-08 81.2 1.3 124 987-1116 1217-1341(1394)
170 PRK15483 type III restriction- 95.6 0.033 7.2E-07 71.5 8.9 159 597-766 66-276 (986)
171 COG0653 SecA Preprotein transl 94.9 0.7 1.5E-05 58.6 17.1 115 970-1089 410-535 (822)
172 KOG0950 DNA polymerase theta/e 94.4 2.4 5.2E-05 54.0 19.8 131 597-731 247-391 (1008)
173 PF13307 Helicase_C_2: Helicas 94.0 0.12 2.7E-06 53.7 6.9 100 990-1094 8-145 (167)
174 TIGR03117 cas_csf4 CRISPR-asso 93.9 0.18 4E-06 62.9 9.1 83 988-1074 468-564 (636)
175 TIGR01407 dinG_rel DnaQ family 93.5 0.16 3.5E-06 66.5 8.3 101 990-1094 673-809 (850)
176 TIGR01407 dinG_rel DnaQ family 93.1 0.41 8.8E-06 62.9 10.9 39 660-701 416-454 (850)
177 PRK08074 bifunctional ATP-depe 92.6 0.51 1.1E-05 62.4 10.8 104 990-1094 751-888 (928)
178 smart00492 HELICc3 helicase su 92.2 0.95 2.1E-05 45.8 9.8 68 1003-1071 3-79 (141)
179 PF04851 ResIII: Type III rest 92.2 0.061 1.3E-06 56.0 1.3 41 226-266 27-69 (184)
180 KOG1513 Nuclear helicase MOP-3 92.0 0.19 4.2E-06 61.6 5.2 81 1034-1115 850-938 (1300)
181 COG1199 DinG Rad3-related DNA 91.8 0.84 1.8E-05 58.3 11.2 102 990-1094 478-612 (654)
182 KOG0947 Cytoplasmic exosomal R 91.0 0.26 5.7E-06 61.9 5.1 120 598-731 320-447 (1248)
183 KOG0353 ATP-dependent DNA heli 90.9 0.4 8.6E-06 54.1 5.8 125 988-1113 314-492 (695)
184 PF02562 PhoH: PhoH-like prote 90.4 0.15 3.3E-06 54.7 2.1 59 658-731 100-159 (205)
185 PF06733 DEAD_2: DEAD_2; Inte 90.1 0.15 3.2E-06 53.5 1.6 43 658-701 117-159 (174)
186 PRK13766 Hef nuclease; Provisi 89.8 0.24 5.2E-06 64.5 3.6 40 226-265 31-76 (773)
187 PF06862 DUF1253: Protein of u 89.7 5.6 0.00012 47.7 14.4 133 988-1123 297-435 (442)
188 KOG1802 RNA helicase nonsense 89.7 0.52 1.1E-05 57.2 5.8 95 598-703 433-584 (935)
189 PF09848 DUF2075: Uncharacteri 89.6 0.88 1.9E-05 53.4 7.9 81 598-701 9-97 (352)
190 smart00491 HELICc2 helicase su 89.3 1.8 4E-05 43.8 8.9 68 1003-1071 3-80 (142)
191 PRK14873 primosome assembly pr 89.2 1.9 4.1E-05 54.6 10.8 120 600-731 170-307 (665)
192 KOG1513 Nuclear helicase MOP-3 88.9 0.52 1.1E-05 58.1 5.1 243 560-821 263-539 (1300)
193 PRK07246 bifunctional ATP-depe 88.8 0.86 1.9E-05 59.3 7.6 78 990-1071 646-725 (820)
194 smart00487 DEXDc DEAD-like hel 88.7 0.37 7.9E-06 50.2 3.4 60 165-266 7-73 (201)
195 COG3587 Restriction endonuclea 88.6 1.2 2.7E-05 55.8 8.2 126 597-726 81-241 (985)
196 TIGR02562 cas3_yersinia CRISPR 88.6 20 0.00043 47.2 19.0 71 660-731 562-638 (1110)
197 TIGR00604 rad3 DNA repair heli 88.5 1.9 4.1E-05 55.5 10.4 104 990-1094 521-669 (705)
198 COG4581 Superfamily II RNA hel 88.5 1.2 2.7E-05 57.9 8.4 135 598-747 142-284 (1041)
199 KOG0337 ATP-dependent RNA heli 87.8 1.2 2.7E-05 51.6 6.9 124 599-727 67-205 (529)
200 KOG1803 DNA helicase [Replicat 87.7 0.85 1.8E-05 55.3 5.9 58 660-731 338-395 (649)
201 PRK11747 dinG ATP-dependent DN 87.4 3 6.6E-05 53.5 11.1 77 991-1071 534-616 (697)
202 KOG0922 DEAH-box RNA helicase 85.9 4 8.6E-05 50.3 10.2 111 988-1103 255-392 (674)
203 smart00488 DEXDc2 DEAD-like he 85.2 0.49 1.1E-05 53.9 2.1 41 659-701 210-250 (289)
204 smart00489 DEXDc3 DEAD-like he 85.2 0.49 1.1E-05 53.9 2.1 41 659-701 210-250 (289)
205 PHA02558 uvsW UvsW helicase; P 84.7 0.68 1.5E-05 57.1 3.2 62 660-731 201-263 (501)
206 cd00046 DEXDc DEAD-like helica 83.6 0.63 1.4E-05 45.3 1.9 40 226-265 2-47 (144)
207 PRK07246 bifunctional ATP-depe 83.1 7.2 0.00016 51.0 11.6 39 659-701 412-450 (820)
208 PRK04296 thymidine kinase; Pro 83.0 2.1 4.6E-05 45.5 5.7 38 685-726 76-114 (190)
209 PRK10536 hypothetical protein; 82.6 0.84 1.8E-05 50.6 2.5 57 661-731 160-216 (262)
210 PF07517 SecA_DEAD: SecA DEAD- 81.8 4.9 0.00011 45.1 8.2 119 562-699 78-209 (266)
211 KOG0949 Predicted helicase, DE 81.7 2 4.4E-05 54.6 5.5 90 1022-1115 969-1059(1330)
212 smart00249 PHD PHD zinc finger 81.3 0.96 2.1E-05 35.6 1.8 32 431-462 10-45 (47)
213 PF12937 F-box-like: F-box-lik 80.1 0.72 1.6E-05 37.0 0.7 37 122-158 1-37 (47)
214 PRK11747 dinG ATP-dependent DN 78.0 1.7 3.7E-05 55.7 3.5 43 659-701 218-260 (697)
215 TIGR03117 cas_csf4 CRISPR-asso 76.4 13 0.00029 46.8 10.4 40 659-701 181-220 (636)
216 COG1061 SSL2 DNA or RNA helica 75.6 2.7 5.9E-05 50.9 4.1 64 161-264 31-97 (442)
217 KOG0329 ATP-dependent RNA heli 74.0 1.6 3.6E-05 47.2 1.5 66 1046-1114 302-367 (387)
218 KOG0948 Nuclear exosomal RNA h 73.9 4.5 9.7E-05 50.3 5.2 115 599-727 153-276 (1041)
219 PF13604 AAA_30: AAA domain; P 72.9 10 0.00022 40.6 7.3 41 687-731 93-134 (196)
220 COG1643 HrpA HrpA-like helicas 71.1 13 0.00027 48.4 8.6 112 988-1104 256-390 (845)
221 PRK11448 hsdR type I restricti 69.5 5.8 0.00012 53.4 5.4 41 225-265 434-481 (1123)
222 KOG4150 Predicted ATP-dependen 69.4 9.8 0.00021 45.8 6.5 100 989-1089 523-630 (1034)
223 TIGR01447 recD exodeoxyribonuc 67.9 15 0.00033 46.1 8.3 42 686-731 258-299 (586)
224 PF00628 PHD: PHD-finger; Int 67.8 2.5 5.5E-05 34.5 1.0 34 429-462 8-46 (51)
225 TIGR00376 DNA helicase, putati 67.7 7.3 0.00016 49.5 5.5 38 598-635 181-224 (637)
226 KOG0341 DEAD-box protein abstr 65.2 4.1 9E-05 46.7 2.3 111 614-727 246-367 (610)
227 TIGR01448 recD_rel helicase, p 65.2 20 0.00044 46.3 8.9 42 686-731 415-456 (720)
228 KOG0923 mRNA splicing factor A 63.1 43 0.00092 41.7 10.2 111 984-1102 466-607 (902)
229 PF13086 AAA_11: AAA domain; P 62.6 11 0.00024 40.5 5.1 58 660-731 170-230 (236)
230 TIGR00631 uvrb excinuclease AB 61.4 15 0.00033 46.7 6.6 41 599-639 38-81 (655)
231 TIGR02881 spore_V_K stage V sp 61.4 11 0.00025 42.1 5.1 43 689-731 107-156 (261)
232 KOG1805 DNA replication helica 60.0 29 0.00063 44.9 8.4 115 599-731 694-833 (1100)
233 COG1875 NYN ribonuclease and A 59.5 9.6 0.00021 44.1 3.9 42 686-731 350-391 (436)
234 PF00397 WW: WW domain; Inter 59.0 9 0.00019 28.0 2.4 28 191-218 3-31 (31)
235 PF13401 AAA_22: AAA domain; P 58.4 9.4 0.0002 37.3 3.3 35 689-727 89-125 (131)
236 PF00646 F-box: F-box domain; 58.3 2.3 5E-05 34.0 -0.9 37 122-158 3-39 (48)
237 PRK10875 recD exonuclease V su 57.6 28 0.00061 44.0 8.0 43 685-731 263-305 (615)
238 smart00256 FBOX A Receptor for 57.5 8.8 0.00019 29.1 2.3 33 125-157 1-33 (41)
239 PF01443 Viral_helicase1: Vira 55.6 19 0.00042 39.1 5.5 41 686-731 61-101 (234)
240 TIGR00604 rad3 DNA repair heli 55.3 5.7 0.00012 51.2 1.5 41 659-701 194-234 (705)
241 PRK08074 bifunctional ATP-depe 54.1 8.3 0.00018 51.3 2.7 40 659-701 430-469 (928)
242 KOG0949 Predicted helicase, DE 52.8 19 0.00041 46.4 5.2 138 599-744 535-682 (1330)
243 PRK14873 primosome assembly pr 52.6 68 0.0015 41.0 10.3 76 1006-1095 442-535 (665)
244 cd00009 AAA The AAA+ (ATPases 50.6 54 0.0012 31.7 7.4 43 687-730 84-132 (151)
245 PRK08084 DNA replication initi 48.3 28 0.00061 38.3 5.3 39 688-726 98-139 (235)
246 cd03028 GRX_PICOT_like Glutare 47.7 86 0.0019 28.8 7.7 60 990-1049 6-71 (90)
247 KOG0951 RNA helicase BRR2, DEA 46.8 41 0.00089 44.8 6.9 110 578-703 1151-1269(1674)
248 COG1435 Tdk Thymidine kinase [ 46.4 58 0.0013 34.7 6.9 26 598-623 12-42 (201)
249 smart00382 AAA ATPases associa 46.0 52 0.0011 31.4 6.4 34 598-631 10-48 (148)
250 TIGR00365 monothiol glutaredox 45.1 84 0.0018 29.5 7.2 60 990-1049 10-75 (97)
251 KOG0353 ATP-dependent DNA heli 44.9 48 0.001 38.1 6.3 139 598-744 117-273 (695)
252 PHA03368 DNA packaging termina 44.0 1.1E+02 0.0024 38.6 9.8 23 679-701 344-366 (738)
253 TIGR03420 DnaA_homol_Hda DnaA 43.5 77 0.0017 34.1 7.9 43 689-731 92-136 (226)
254 KOG1132 Helicase of the DEAD s 43.5 15 0.00033 46.8 2.4 90 988-1078 558-663 (945)
255 KOG0924 mRNA splicing factor A 43.2 59 0.0013 40.6 7.1 119 988-1109 560-705 (1042)
256 smart00456 WW Domain with 2 co 42.4 26 0.00057 25.4 2.7 30 190-219 2-31 (32)
257 PRK05642 DNA replication initi 41.6 55 0.0012 36.0 6.3 39 688-726 98-138 (234)
258 KOG0922 DEAH-box RNA helicase 41.5 80 0.0017 39.5 8.0 130 598-746 74-220 (674)
259 PF00265 TK: Thymidine kinase; 40.9 29 0.00063 36.5 3.8 13 688-700 77-89 (176)
260 KOG0926 DEAH-box RNA helicase 40.2 42 0.00091 42.6 5.4 93 589-698 274-383 (1172)
261 KOG0953 Mitochondrial RNA heli 40.0 43 0.00093 40.8 5.3 114 599-727 200-314 (700)
262 KOG0329 ATP-dependent RNA heli 39.9 44 0.00096 36.7 4.9 125 599-726 88-226 (387)
263 KOG0978 E3 ubiquitin ligase in 39.7 15 0.00032 46.2 1.6 38 901-938 642-692 (698)
264 KOG1973 Chromatin remodeling p 39.5 11 0.00024 42.5 0.5 30 432-462 229-263 (274)
265 CHL00181 cbbX CbbX; Provisiona 39.4 30 0.00066 39.4 4.0 11 689-699 124-134 (287)
266 PRK04132 replication factor C 37.5 1.1E+02 0.0024 40.0 8.9 61 686-752 629-690 (846)
267 PRK14087 dnaA chromosomal repl 36.3 56 0.0012 39.8 5.8 40 687-726 206-247 (450)
268 cd00201 WW Two conserved trypt 34.7 41 0.00088 24.0 2.6 29 191-219 2-30 (31)
269 COG1199 DinG Rad3-related DNA 34.5 28 0.00061 44.5 3.0 41 660-701 194-234 (654)
270 PF05876 Terminase_GpA: Phage 34.2 1.4E+02 0.0031 37.4 8.9 124 599-731 42-183 (557)
271 KOG3259 Peptidyl-prolyl cis-tr 34.1 34 0.00074 34.3 2.8 45 188-232 6-51 (163)
272 COG2842 Uncharacterized ATPase 33.5 45 0.00097 37.8 3.9 108 589-728 94-203 (297)
273 PF13607 Succ_CoA_lig: Succiny 33.2 1.9E+02 0.004 29.2 8.0 86 993-1098 3-90 (138)
274 PRK06893 DNA replication initi 32.6 1E+02 0.0023 33.6 6.7 45 687-731 91-138 (229)
275 COG0626 MetC Cystathionine bet 31.4 99 0.0021 36.9 6.5 74 988-1085 99-173 (396)
276 PHA03333 putative ATPase subun 31.3 3.2E+02 0.0069 35.0 10.9 47 680-731 287-335 (752)
277 PF13173 AAA_14: AAA domain 31.2 42 0.00091 33.0 3.0 42 687-731 61-102 (128)
278 cd03418 GRX_GRXb_1_3_like Glut 30.7 2.1E+02 0.0045 24.7 7.1 55 993-1047 1-57 (75)
279 KOG0947 Cytoplasmic exosomal R 29.5 1.2E+02 0.0026 39.6 6.9 79 1021-1102 636-723 (1248)
280 KOG0952 DNA/RNA helicase MER3/ 29.4 78 0.0017 41.5 5.4 101 595-702 948-1061(1230)
281 PRK12422 chromosomal replicati 28.7 1.1E+02 0.0024 37.2 6.5 41 687-727 202-244 (445)
282 KOG1133 Helicase of the DEAD s 28.5 26 0.00057 43.6 1.2 81 991-1072 629-721 (821)
283 PRK14086 dnaA chromosomal repl 28.4 1.9E+02 0.0042 36.5 8.6 44 688-731 378-423 (617)
284 PRK00149 dnaA chromosomal repl 27.8 97 0.0021 37.7 5.9 41 687-727 211-253 (450)
285 TIGR00362 DnaA chromosomal rep 27.7 1.1E+02 0.0023 36.7 6.2 39 688-726 200-240 (405)
286 PRK00440 rfc replication facto 27.4 2.7E+02 0.0058 31.7 9.2 41 686-727 101-141 (319)
287 PRK08727 hypothetical protein; 27.2 89 0.0019 34.3 5.0 41 687-727 93-135 (233)
288 PRK07003 DNA polymerase III su 26.7 67 0.0015 41.3 4.2 62 686-752 118-179 (830)
289 KOG1133 Helicase of the DEAD s 26.7 2.9E+02 0.0064 35.0 9.4 54 641-701 309-362 (821)
290 PRK14974 cell division protein 25.9 2.3E+02 0.005 33.1 8.3 44 687-730 222-267 (336)
291 PRK05703 flhF flagellar biosyn 25.9 2.3E+02 0.0049 34.3 8.5 58 687-748 299-359 (424)
292 PRK10917 ATP-dependent DNA hel 25.7 2.2E+02 0.0048 36.7 8.8 77 989-1066 308-389 (681)
293 COG3421 Uncharacterized protei 25.4 70 0.0015 39.5 3.8 104 598-701 5-126 (812)
294 TIGR02768 TraA_Ti Ti-type conj 25.3 1.9E+02 0.0042 37.6 8.2 42 686-731 438-480 (744)
295 KOG0327 Translation initiation 25.2 1.4E+02 0.0031 35.0 6.1 126 599-727 72-210 (397)
296 cd03031 GRX_GRX_like Glutaredo 24.9 2.7E+02 0.006 28.4 7.6 57 993-1049 1-68 (147)
297 PLN03025 replication factor C 24.9 92 0.002 35.9 4.8 61 686-752 98-159 (319)
298 TIGR02880 cbbX_cfxQ probable R 24.8 67 0.0015 36.5 3.6 11 689-699 123-133 (284)
299 KOG0920 ATP-dependent RNA heli 24.3 2.2E+02 0.0048 37.6 8.2 110 989-1104 411-547 (924)
300 KOG0925 mRNA splicing factor A 24.0 1.7E+02 0.0036 35.4 6.4 113 989-1107 251-393 (699)
301 KOG0344 ATP-dependent RNA heli 23.9 57 0.0012 40.1 2.8 103 598-702 181-303 (593)
302 KOG1131 RNA polymerase II tran 23.8 64 0.0014 39.1 3.1 106 988-1094 528-676 (755)
303 COG1643 HrpA HrpA-like helicas 23.8 3.2E+02 0.0069 36.0 9.6 127 598-742 73-216 (845)
304 COG2247 LytB Putative cell wal 23.5 2.3E+02 0.0049 32.6 7.1 62 988-1049 73-139 (337)
305 PRK08903 DnaA regulatory inact 23.4 2.4E+02 0.0051 30.6 7.4 39 688-727 91-131 (227)
306 PRK14088 dnaA chromosomal repl 23.4 1.3E+02 0.0029 36.5 5.9 40 687-726 194-235 (440)
307 PF14835 zf-RING_6: zf-RING of 22.8 73 0.0016 27.7 2.4 24 910-934 27-50 (65)
308 KOG0320 Predicted E3 ubiquitin 22.4 41 0.00089 35.0 1.1 23 910-932 152-175 (187)
309 PF00308 Bac_DnaA: Bacterial d 22.3 2.8E+02 0.0061 30.1 7.7 40 687-726 97-138 (219)
310 PRK13556 azoreductase; Provisi 22.1 51 0.0011 35.5 1.8 30 1058-1087 87-119 (208)
311 PF08469 NPHI_C: Nucleoside tr 21.7 1.8E+02 0.004 29.3 5.3 38 1089-1126 8-50 (148)
312 PRK10824 glutaredoxin-4; Provi 21.3 2.9E+02 0.0064 27.0 6.6 64 990-1054 13-84 (115)
313 COG1702 PhoH Phosphate starvat 21.0 55 0.0012 37.9 1.8 40 687-731 243-283 (348)
314 PF05621 TniB: Bacterial TniB 20.9 60 0.0013 37.1 2.1 47 681-727 139-189 (302)
315 PF12340 DUF3638: Protein of u 20.2 95 0.0021 34.1 3.4 59 164-262 21-84 (229)
316 TIGR00643 recG ATP-dependent D 20.2 2.9E+02 0.0064 35.2 8.3 59 990-1049 283-345 (630)
No 1
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=3.4e-82 Score=730.25 Aligned_cols=442 Identities=21% Similarity=0.357 Sum_probs=377.4
Q ss_pred ccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECcccHHHHHHH
Q 001095 560 GFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPSYLVDHWKTQ 631 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~sLl~qW~~E 631 (1158)
+-+++||..|+.|.+ .+|.++.+|||||+ ||||||+|+|+++. .||.||+||.|++.||.+|
T Consensus 166 g~lr~YQveGlnWLi------~l~engingILaDE----MGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~E 235 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLI------SLYENGINGILADE----MGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNE 235 (971)
T ss_pred CccchhhhccHHHHH------HHHhcCcccEeehh----cccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHH
Confidence 448999999996644 46889999999996 99999999999863 4899999999999999999
Q ss_pred HHhhcCCCCeEEEEecCCCCcccc-----cccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHH
Q 001095 632 IQQHVRPGQLHLFVWTDHKKPSAH-----SLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLT 706 (1158)
Q Consensus 632 i~k~~~~~~l~v~v~~g~~~~~~~-----~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t 706 (1158)
|.+|+|. +++++|+|.+..+.. -....+||+||||++.. ++.+.|..+.|.++|+||||+|||.++
T Consensus 236 f~rf~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i-----~dk~~lk~~~W~ylvIDEaHRiKN~~s-- 306 (971)
T KOG0385|consen 236 FKRFTPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAI-----KDKSFLKKFNWRYLVIDEAHRIKNEKS-- 306 (971)
T ss_pred HHHhCCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHH-----hhHHHHhcCCceEEEechhhhhcchhh--
Confidence 9999987 999999998654322 12348999999999998 558999999999999999999999874
Q ss_pred HHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHh
Q 001095 707 NKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMI 786 (1158)
Q Consensus 707 ~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~ml 786 (1158)
...+.++.+.+.+|++|||||+||+ +.|||+||+||-|++|++ ...|..+|......++.+...+|+.+|++|++
T Consensus 307 ~L~~~lr~f~~~nrLLlTGTPLQNN----L~ELWaLLnFllPdiF~~-~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 307 KLSKILREFKTDNRLLLTGTPLQNN----LHELWALLNFLLPDIFNS-AEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred HHHHHHHHhcccceeEeeCCccccc----HHHHHHHHHhhchhhccC-HHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 4456888999999999999999999 999999999999999996 78899998877766777788999999999999
Q ss_pred hhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccC
Q 001095 787 SARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAG 865 (1158)
Q Consensus 787 RR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~ 865 (1158)
||.|.++. .|||+.+.++++.||+.|+++|..++..-...+. +. +.........+++.||++|+||.
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n-----~~-------~~~~k~kL~NI~mQLRKccnHPY 449 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALN-----GE-------GKGEKTKLQNIMMQLRKCCNHPY 449 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhc-----cc-------ccchhhHHHHHHHHHHHhcCCcc
Confidence 99999985 8999999999999999999999987653211110 00 11123455678999999999998
Q ss_pred CccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCC
Q 001095 866 HIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRP 945 (1158)
Q Consensus 866 ~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~ 945 (1158)
++...
T Consensus 450 LF~g~--------------------------------------------------------------------------- 454 (971)
T KOG0385|consen 450 LFDGA--------------------------------------------------------------------------- 454 (971)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 65321
Q ss_pred CCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001095 946 ENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM 1025 (1158)
Q Consensus 946 ~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t 1025 (1158)
.+.+.+....+++ ..+++..++++|+.. ..+.|+|||||||++.+||+|++++.-.|+.|++|||+|
T Consensus 455 -ePg~pyttdehLv--------~nSGKm~vLDkLL~~----Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt 521 (971)
T KOG0385|consen 455 -EPGPPYTTDEHLV--------TNSGKMLVLDKLLPK----LKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGST 521 (971)
T ss_pred -CCCCCCCcchHHH--------hcCcceehHHHHHHH----HHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCC
Confidence 1223334445555 235566666666544 378999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCC--CeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001095 1026 HSSNKIKSLDMFRHDA--SCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1026 ~~~~R~~~i~~F~~~~--~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
+.++|..+|+.||.++ .+.+||+|+|||.||||++|++||+||.+|||..+.||++|||||||+|+|.||||++++||
T Consensus 522 ~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 522 SHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred CcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 9999999999999876 35666667999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhh
Q 001095 1104 EEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus 1104 EE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
||+|+++...|+++.++|++..
T Consensus 602 Ee~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 602 EEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred HHHHHHHHHHHhchhhhhhccC
Confidence 9999999999999999998876
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-78 Score=705.63 Aligned_cols=420 Identities=22% Similarity=0.361 Sum_probs=350.6
Q ss_pred ccccCCCcEEeecccCCcccchHHHHHHHHhc--------CCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 001095 582 YYPKTLDNLAFDLAALRLALCEPLDSVRLYLS--------RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS 653 (1158)
Q Consensus 582 l~~~~~ggILaDelad~mGLGKTlqaiall~s--------~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~ 653 (1158)
||.++-||||+|+ ||||||+|+|+++.+ +|+|||||++++.||.+|+++|+++ ++|.+||+.....
T Consensus 220 L~~q~~GGILgDe----MGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~--~rv~ilh~t~s~~ 293 (923)
T KOG0387|consen 220 LYCQRAGGILGDE----MGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPP--FRVFILHGTGSGA 293 (923)
T ss_pred HHhccCCCeeccc----ccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcc--eEEEEEecCCccc
Confidence 3456678999995 999999999999753 7999999999999999999999987 9999999865421
Q ss_pred ---------------cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccC
Q 001095 654 ---------------AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS 718 (1158)
Q Consensus 654 ---------------~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~ 718 (1158)
......+..|+||||+.++ .....+..+.|++|||||+|+|||++ +..+.+++.+++.
T Consensus 294 r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r-----~~~d~l~~~~W~y~ILDEGH~IrNpn--s~islackki~T~ 366 (923)
T KOG0387|consen 294 RYDASHSSHKKDKLLIRKVATDGGILITTYDGFR-----IQGDDLLGILWDYVILDEGHRIRNPN--SKISLACKKIRTV 366 (923)
T ss_pred ccccchhhhhhhhhheeeecccCcEEEEehhhhc-----ccCcccccccccEEEecCcccccCCc--cHHHHHHHhcccc
Confidence 1122235679999999998 55778999999999999999999999 5667799999999
Q ss_pred eEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhh------------HHHHHHHHHHHHhHHh
Q 001095 719 NRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEM------------EEGRSRLLQLLHRCMI 786 (1158)
Q Consensus 719 ~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~------------~~~~~~L~~lL~~~ml 786 (1158)
+|++|||||+||+ +.|||+|++|+.|+.+|+ ...|++.|..|+..+. ..-...|+.+|.++++
T Consensus 367 ~RiILSGTPiQNn----L~ELwsLfDFv~PG~Lgt-~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylL 441 (923)
T KOG0387|consen 367 HRIILSGTPIQNN----LTELWSLFDFVFPGKLGT-LPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLL 441 (923)
T ss_pred ceEEeeCccccch----HHHHHHHhhhccCCcccc-hHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999 999999999999999997 8999999999997654 2234468889999999
Q ss_pred hhcccccc--cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHcccc
Q 001095 787 SARKTDLQ--TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVA 864 (1158)
Q Consensus 787 RR~K~dv~--~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~ 864 (1158)
||+|+|+. .||.|.+++++|.||+.|+.+|+++.+.-. +..+++.+. ..+.-+.-||.+||||
T Consensus 442 RR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~-------------v~~i~ng~~--~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 442 RRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSE-------------VNKILNGKR--NCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHH-------------HHHHHcCCc--cceechHHHHhhcCCc
Confidence 99999985 699999999999999999999999886522 223333322 1233478899999999
Q ss_pred CCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCC
Q 001095 865 GHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTR 944 (1158)
Q Consensus 865 ~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~ 944 (1158)
.++...... ..+
T Consensus 507 dll~~~~~~-------------------------------------------------------------~~~------- 518 (923)
T KOG0387|consen 507 DLLDRRDED-------------------------------------------------------------EKQ------- 518 (923)
T ss_pred ccccCcccc-------------------------------------------------------------ccc-------
Confidence 865422100 000
Q ss_pred CCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHH-HCCCeEEEEeC
Q 001095 945 PENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLT-VAGIKFAGMYS 1023 (1158)
Q Consensus 945 ~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~-~~gi~~~~ldG 1023 (1158)
.+++. -..-.+++++.+..|+.. ....|+|||+|||...|||+|+..|. ..|+.|+++||
T Consensus 519 ----~~D~~-----------g~~k~sGKm~vl~~ll~~----W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDG 579 (923)
T KOG0387|consen 519 ----GPDYE-----------GDPKRSGKMKVLAKLLKD----WKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDG 579 (923)
T ss_pred ----CCCcC-----------CChhhcchHHHHHHHHHH----HhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecC
Confidence 00000 000124566666666654 47789999999999999999999999 68999999999
Q ss_pred CCCHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001095 1024 PMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1024 ~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
+|+...|+.+|++||++..+.|||+| ++||.|||||+||+||+|||+|||+.+.||..|||||||+|.|.||||++.||
T Consensus 580 tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 580 TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99999999999999999998888887 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 001095 1103 VEEQMLEFLQDTDRCRRLL 1121 (1158)
Q Consensus 1103 IEE~Il~~l~~K~~l~~~v 1121 (1158)
|||+||.+|..|..+...+
T Consensus 660 IEEkiY~rQI~Kq~Ltn~i 678 (923)
T KOG0387|consen 660 IEEKIYHRQIFKQFLTNRI 678 (923)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998665443
No 3
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=7.6e-79 Score=670.72 Aligned_cols=534 Identities=23% Similarity=0.423 Sum_probs=411.5
Q ss_pred chhhHHhhhHHHH--hhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc----CCEEEEECcccHHHHHHHHHhh
Q 001095 562 HKIFQAFGLIRRV--EKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS----RATLIVVPSYLVDHWKTQIQQH 635 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~--e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s----~~tLIVvP~sLl~qW~~Ei~k~ 635 (1158)
+-+||.+||.|.. |.... .||||||| ||+|||+|+|+++++ .|||||||...+.||.+||.+|
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~-------~GGiLADE----MGMGKTIQtIaLllae~~ra~tLVvaP~VAlmQW~nEI~~~ 253 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSV-------AGGILADE----MGMGKTIQTIALLLAEVDRAPTLVVAPTVALMQWKNEIERH 253 (791)
T ss_pred chhhhHHHHHHHHHhhhhhh-------ccceehhh----hccchHHHHHHHHHhccccCCeeEEccHHHHHHHHHHHHHh
Confidence 5699999997753 33333 46999996 999999999999876 6999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhc------------CCCCCcccccceEEEEccccccCCCc
Q 001095 636 VRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGR------------RKKSPMMQVHWLRVMLDEGHTLGSSL 703 (1158)
Q Consensus 636 ~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~------------~~~~~L~~~~w~rVIlDEAH~ikn~~ 703 (1158)
+. +.+++++|||.++...-..+..||+|+|||.++.+++++ +..+.|+++.|.||||||||.||++.
T Consensus 254 T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~ 332 (791)
T KOG1002|consen 254 TS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ 332 (791)
T ss_pred cc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc
Confidence 86 789999999987654433344999999999999998864 34688999999999999999999988
Q ss_pred hHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCC------------------------------
Q 001095 704 NLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQ------------------------------ 753 (1158)
Q Consensus 704 s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~------------------------------ 753 (1158)
+.| ++++..|.+.+||+|||||+||+ +.|||+|++||+..||..
T Consensus 333 snT--ArAV~~L~tt~rw~LSGTPLQNr----igElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~ 406 (791)
T KOG1002|consen 333 SNT--ARAVFALETTYRWCLSGTPLQNR----IGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQ 406 (791)
T ss_pred ccH--HHHHHhhHhhhhhhccCCcchhh----HHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhh
Confidence 655 56899999999999999999999 999999999999998761
Q ss_pred chHHHhhhccCcchhhh-----HHHHHHHHHHHHhHHhhhcccc---cccCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Q 001095 754 NQKAWDGGILRPFEAEM-----EEGRSRLLQLLHRCMISARKTD---LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRR 825 (1158)
Q Consensus 754 ~~~~f~~~~~~p~~~~~-----~~~~~~L~~lL~~~mlRR~K~d---v~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~ 825 (1158)
..-+|.....+|+.... ..+....+.+|..+|+||+|-+ -+.|||++..+..=-|+.+|..+|+.+....++
T Consensus 407 h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkr 486 (791)
T KOG1002|consen 407 HTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKR 486 (791)
T ss_pred hhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHH
Confidence 12345666667776543 3445567788999999999843 457999999998889999999999999876555
Q ss_pred HhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchhHHH-H-HHHHHHcCCCcchHHHHHHHHhhh
Q 001095 826 NILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQE-T-MDVLVENGLDPLSQEYAFIKYNLL 903 (1158)
Q Consensus 826 ~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~-~-l~~l~~~~~~~~s~~~~~l~~~l~ 903 (1158)
.+ +..-....+++ ++...+.++.+|||+..||.++..... ..+.. . -+..-..+.++..+ + .
T Consensus 487 kf-----ntyieeGvvlN--NYAnIF~LitRmRQ~aDHP~LVl~S~~-~n~~~enk~~~~C~lc~d~aed-~------i- 550 (791)
T KOG1002|consen 487 KF-----NTYIEEGVVLN--NYANIFTLITRMRQAADHPDLVLYSAN-ANLPDENKGEVECGLCHDPAED-Y------I- 550 (791)
T ss_pred hh-----hhHHhhhhhhh--hHHHHHHHHHHHHHhccCcceeeehhh-cCCCccccCceeecccCChhhh-h------H-
Confidence 43 22222233444 566788899999999999987764210 00000 0 00000001111110 0 0
Q ss_pred cCCCccchhhhhhhhc------cccCCCCCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCch--HHH
Q 001095 904 NGGNCLRHILCLDCVA------MDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTN--TFL 975 (1158)
Q Consensus 904 ~~~~c~~h~~C~~c~~------~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~--~~L 975 (1158)
...| .|.||.-|+. .++.-.+||.|..++.+...+......... .-....++... ....|+++. ..|
T Consensus 551 -~s~C-hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~--~Fk~sSIlnRi-nm~~~qsSTKIEAL 625 (791)
T KOG1002|consen 551 -ESSC-HHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLK--GFKASSILNRI-NMDDWQSSTKIEAL 625 (791)
T ss_pred -hhhh-hHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchh--hhhhHHHhhhc-chhhhcchhHHHHH
Confidence 1234 8999999985 344448899999988776544222111111 01111222211 123477655 667
Q ss_pred HHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-Ccccc
Q 001095 976 KQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASL 1054 (1158)
Q Consensus 976 ~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~ 1054 (1158)
+++|..+. .....-|.||||||+.+||+|+-.|.+.|+.++.+.|+|+++.|.+.|+.|.+++.|+|||+| +|||+
T Consensus 626 ~EEl~~l~---~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGV 702 (791)
T KOG1002|consen 626 VEELYFLR---ERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGV 702 (791)
T ss_pred HHHHHHHH---HcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCce
Confidence 77776554 456778999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred ccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhhcCccccccc
Q 001095 1055 GLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGAR 1134 (1158)
Q Consensus 1055 GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~~~~~~~ 1134 (1158)
.|||+.|++|++|||||||+++.||.+|+|||||.|||.|.||+.++|||++|+++|+.|. +++..+++.++. +.
T Consensus 703 ALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa---~mihaTi~qde~--Ai 777 (791)
T KOG1002|consen 703 ALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKA---NMIHATIGQDEE--AI 777 (791)
T ss_pred EeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHh---hhhhhhcCCcHH--HH
Confidence 9999999999999999999999999999999999999999999999999999999988885 677777766553 34
Q ss_pred ccCCHhhh
Q 001095 1135 SHRTLHDF 1142 (1158)
Q Consensus 1135 ~~~~l~dl 1142 (1158)
.+.+.+||
T Consensus 778 ~kLt~eDm 785 (791)
T KOG1002|consen 778 SKLTEEDM 785 (791)
T ss_pred HhcCHHHH
Confidence 46676666
No 4
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-78 Score=701.36 Aligned_cols=505 Identities=22% Similarity=0.344 Sum_probs=388.9
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-------cCCEEEEECcccHHHHHHHHHh
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-------SRATLIVVPSYLVDHWKTQIQQ 634 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-------s~~tLIVvP~sLl~qW~~Ei~k 634 (1158)
+++||..|+-|. .-+|.+.++|||||| ||||||+|+|+++. .+|.|||||+|+++||.+||++
T Consensus 400 LkdYQlvGvNWL------~Llyk~~l~gILADE----MGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~k 469 (941)
T KOG0389|consen 400 LKDYQLVGVNWL------LLLYKKKLNGILADE----MGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAK 469 (941)
T ss_pred ccchhhhhHHHH------HHHHHccccceehhh----ccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHH
Confidence 899999999653 347788999999996 99999999999974 4899999999999999999999
Q ss_pred hcCCCCeEEEEecCCCCcc------cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHH
Q 001095 635 HVRPGQLHLFVWTDHKKPS------AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK 708 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~------~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~ 708 (1158)
|+|. ++|.-|+|....+ ...-..+|||++|||+.+.+. +.+++.|....|++||.||||++||.+ +.+
T Consensus 470 wCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~--kdDRsflk~~~~n~viyDEgHmLKN~~--SeR 543 (941)
T KOG0389|consen 470 WCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASS--KDDRSFLKNQKFNYVIYDEGHMLKNRT--SER 543 (941)
T ss_pred hCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCC--hHHHHHHHhccccEEEecchhhhhccc--hHH
Confidence 9997 9999999975432 222234899999999998743 456788999999999999999999988 566
Q ss_pred HHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcch-hhh-------HHHHHHHHHH
Q 001095 709 LQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE-AEM-------EEGRSRLLQL 780 (1158)
Q Consensus 709 ~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~-~~~-------~~~~~~L~~l 780 (1158)
++-+..++|.+|++|||||+||+ +.||++||.|+.|+.|......+...|...-. .++ .+...+...+
T Consensus 544 y~~LM~I~An~RlLLTGTPLQNN----L~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 544 YKHLMSINANFRLLLTGTPLQNN----LKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred HHHhccccccceEEeeCCccccc----HHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHh
Confidence 78899999999999999999999 99999999999999998766666655543221 111 2345677789
Q ss_pred HHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHH
Q 001095 781 LHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRL 859 (1158)
Q Consensus 781 L~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~ 859 (1158)
+.||++||+|.+|+ +||||+.++.+|+|+..|+.+|+++++.....+-....+ +-+. ....++.||+
T Consensus 620 m~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n------s~~~------~~~vlmqlRK 687 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN------SELK------SGNVLMQLRK 687 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc------cccc------cchHHHHHHH
Confidence 99999999999985 899999999999999999999999998763221111000 0000 1346999999
Q ss_pred HccccCCccccccchhHHHHHHHHHHcC-CCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCC
Q 001095 860 SCCVAGHIKVTDAGEDIQETMDVLVENG-LDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQS 938 (1158)
Q Consensus 860 ~c~h~~~~~~~~~~~~~~~~l~~l~~~~-~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~ 938 (1158)
+++||-+++.....+.+....+.+.... ...... +.+...+..-..-.-|.+|.. .+ |-..+.+.+
T Consensus 688 ~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~--qyIfEDm~~msDfelHqLc~~----------f~-~~~~f~L~d 754 (941)
T KOG0389|consen 688 AANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANE--QYIFEDMEVMSDFELHQLCCQ----------FR-HLSKFQLKD 754 (941)
T ss_pred HhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCH--HHHHHHHHhhhHHHHHHHHHh----------cC-CCcccccCC
Confidence 9999998887666666555555554221 111111 111111111111114555532 12 222222211
Q ss_pred ccccCCCCCCCCCCCCChhhhhhccccccccC-ch-HHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCC
Q 001095 939 PEILTRPENPNPKWPVPQDLIELQPSYRQWSN-TN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGI 1016 (1158)
Q Consensus 939 ~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s-~~-~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi 1016 (1158)
+. |.. ++ .+|...|-. ....|+||||||||+.|||+|+..|.-.|+
T Consensus 755 ------------------~~---------~mdSgK~r~L~~LLp~-----~k~~G~RVLiFSQFTqmLDILE~~L~~l~~ 802 (941)
T KOG0389|consen 755 ------------------DL---------WMDSGKCRKLKELLPK-----IKKKGDRVLIFSQFTQMLDILEVVLDTLGY 802 (941)
T ss_pred ------------------ch---------hhhhhhHhHHHHHHHH-----HhhcCCEEEEeeHHHHHHHHHHHHHHhcCc
Confidence 11 222 22 223322222 367889999999999999999999999999
Q ss_pred eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEE
Q 001095 1017 KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1017 ~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
+|+|+||+|....|+.+|+.|+.+.++.|+|+| +|||.||||++||+||++|.++||-.+.||.+||||+||+|+|+||
T Consensus 803 ~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~ 882 (941)
T KOG0389|consen 803 KYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVY 882 (941)
T ss_pred eEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEE
Confidence 999999999999999999999999988777666 9999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHhHHHHHHHHhhhcCcccccccccCCHhhhhhhh
Q 001095 1096 TLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESN 1146 (1158)
Q Consensus 1096 rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~~~~~~~~~~~l~dl~~~~ 1146 (1158)
|||+++||||.|+++.+.|+.+...+.+.....+.++ ++.+.++.+.+
T Consensus 883 rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~~~e~---~~~v~~lL~~~ 930 (941)
T KOG0389|consen 883 RLITKSTIEEGILRLAKTKLALEADLTEDGKGVEDEG---EKTVGKLLETE 930 (941)
T ss_pred EEEecCcHHHHHHHHHHHhhhhhhhhccCccchhhhh---hhHHHHHHHHH
Confidence 9999999999999999999988777766555544433 55666666554
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2e-76 Score=706.88 Aligned_cols=469 Identities=19% Similarity=0.316 Sum_probs=380.9
Q ss_pred cccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc--------------CCEEEEECccc
Q 001095 559 QGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS--------------RATLIVVPSYL 624 (1158)
Q Consensus 559 ~~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s--------------~~tLIVvP~sL 624 (1158)
..-+|.||.+|+- |.++|+...+.|||+| |||||||+|++.++++ .|.|||||++|
T Consensus 973 ~a~LRkYQqEGVn------WLaFLnky~LHGILcD----DMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTL 1042 (1549)
T KOG0392|consen 973 SAKLRKYQQEGVN------WLAFLNKYKLHGILCD----DMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTL 1042 (1549)
T ss_pred hHHHHHHHHhccH------HHHHHHHhcccceeec----cccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchh
Confidence 3458899999984 4667778889999999 6999999999999864 38999999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCCC--cccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCC
Q 001095 625 VDHWKTQIQQHVRPGQLHLFVWTDHKK--PSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSS 702 (1158)
Q Consensus 625 l~qW~~Ei~k~~~~~~l~v~v~~g~~~--~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~ 702 (1158)
..+|+.|+.+|+|- ++|..|-|... ...+....+++|+||||++++++ ...|.++.|+++||||+|.|||
T Consensus 1043 tGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD-----~d~l~~~~wNYcVLDEGHVikN- 1114 (1549)
T KOG0392|consen 1043 TGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRND-----VDYLIKIDWNYCVLDEGHVIKN- 1114 (1549)
T ss_pred hhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHH-----HHHHHhcccceEEecCcceecc-
Confidence 99999999999986 89999987643 33444455789999999999955 5678899999999999999999
Q ss_pred chHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhh------------
Q 001095 703 LNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEM------------ 770 (1158)
Q Consensus 703 ~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~------------ 770 (1158)
++++.+++++.|++.+|++||||||||+ +.|||+|++||.|+.+|+ .+.|+..|.+|+.+..
T Consensus 1115 -~ktkl~kavkqL~a~hRLILSGTPIQNn----vleLWSLFdFLMPGfLGt-EKqFqsrf~kpI~asRd~K~Sske~EaG 1188 (1549)
T KOG0392|consen 1115 -SKTKLTKAVKQLRANHRLILSGTPIQNN----VLELWSLFDFLMPGFLGT-EKQFQSRFGKPILASRDPKSSSKEQEAG 1188 (1549)
T ss_pred -hHHHHHHHHHHHhhcceEEeeCCCcccC----HHHHHHHHHHhcccccCc-HHHHHHHhcchhhhhcCcccchhHHHhh
Confidence 5578888999999999999999999999 999999999999999997 8899999999986532
Q ss_pred HHHHHHHHHHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhh
Q 001095 771 EEGRSRLLQLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKF 849 (1158)
Q Consensus 771 ~~~~~~L~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~ 849 (1158)
..+.+.|++.+-|||+||.|.|++ +||||+.+.++|+|+|.|+++|+++..+......... . ...+++ .. ....
T Consensus 1189 ~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~-d--~~~~S~-gt-~~~H 1263 (1549)
T KOG0392|consen 1189 VLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQI-D--GGEESL-GT-DKTH 1263 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhcccccccc-c--cchhcc-Cc-chHH
Confidence 235677999999999999999985 8999999999999999999999999987333222111 1 111111 11 1456
Q ss_pred HHHHHHHHHHHccccCCccccccchhHHHHHHHHHH--cCC--CcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCC
Q 001095 850 RSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVE--NGL--DPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKC 925 (1158)
Q Consensus 850 ~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~--~~~--~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~ 925 (1158)
.++.+..||+.|+||.++...... +.....+.+.. .++ ..-+.....+++.+..|+.|
T Consensus 1264 vFqaLqYlrKLcnHpaLvlt~~hp-~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig----------------- 1325 (1549)
T KOG0392|consen 1264 VFQALQYLRKLCNHPALVLTPVHP-DLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIG----------------- 1325 (1549)
T ss_pred HHHHHHHHHHhcCCcceeeCCCcc-hHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCC-----------------
Confidence 788899999999999988765222 22222222221 111 11233445566666666654
Q ss_pred CCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHH
Q 001095 926 SLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIH 1005 (1158)
Q Consensus 926 ~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld 1005 (1158)
.. +.+.++. ...-.++|+|||+|+++++|
T Consensus 1326 -----~~------------~~~~~g~----------------------------------~s~vsqHRiLIFcQlK~mlD 1354 (1549)
T KOG0392|consen 1326 -----NN------------SDSEVGT----------------------------------PSDVSQHRILIFCQLKSMLD 1354 (1549)
T ss_pred -----CC------------CcccccC----------------------------------cchhccceeEEeeeHHHHHH
Confidence 00 0000000 00136799999999999999
Q ss_pred HHHHHHHHC---CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHh
Q 001095 1006 VIEQQLTVA---GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVIS 1081 (1158)
Q Consensus 1006 ~L~~~L~~~---gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAig 1081 (1158)
++++.|-+. .+.|.++||++++.+|++++++||+|+.+.|||+| .+||.|||||+|++|||+|-+|||+.+.||++
T Consensus 1355 lVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMD 1434 (1549)
T KOG0392|consen 1355 LVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMD 1434 (1549)
T ss_pred HHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHH
Confidence 999999765 66799999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred cccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhh
Q 001095 1082 RAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus 1082 RahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
|||||||+|.|.|||||++||+||+|+.+|..|.+.++.|.+.-
T Consensus 1435 RAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqq 1478 (1549)
T KOG0392|consen 1435 RAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQ 1478 (1549)
T ss_pred HHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcc
Confidence 99999999999999999999999999999999999888877643
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=4.3e-74 Score=691.48 Aligned_cols=461 Identities=19% Similarity=0.314 Sum_probs=375.0
Q ss_pred cchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECcccHHHHHHHH
Q 001095 561 FHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPSYLVDHWKTQI 632 (1158)
Q Consensus 561 ~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~sLl~qW~~Ei 632 (1158)
-+|.||.+|+-|.+ +.|.+..+|||||| ||||||+|+++++. .||+|||||.|.+.+|+.||
T Consensus 370 ~LRdyQLeGlNWl~------~~W~~~~n~ILADE----mgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef 439 (1373)
T KOG0384|consen 370 ELRDYQLEGLNWLL------YSWYKRNNCILADE----MGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREF 439 (1373)
T ss_pred hhhhhhcccchhHH------HHHHhcccceehhh----cCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHH
Confidence 38999999995543 45667889999996 99999999999863 49999999999999999999
Q ss_pred HhhcCCCCeEEEEecCCCCcc--ccc---------ccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 633 QQHVRPGQLHLFVWTDHKKPS--AHS---------LAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 633 ~k~~~~~~l~v~v~~g~~~~~--~~~---------l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
..|+. +++++|+|....+ +.. -.-+|+++||||+++. .+...|..++|..+++||||++||
T Consensus 440 ~~w~~---mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~L-----kDk~~L~~i~w~~~~vDeahrLkN 511 (1373)
T KOG0384|consen 440 ETWTD---MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL-----KDKAELSKIPWRYLLVDEAHRLKN 511 (1373)
T ss_pred HHHhh---hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHh-----ccHhhhccCCcceeeecHHhhcCc
Confidence 99983 9999999864321 110 1126999999999998 668999999999999999999999
Q ss_pred CchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHH
Q 001095 702 SLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLL 781 (1158)
Q Consensus 702 ~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL 781 (1158)
.. ...+..+..++..+|+++||||+||+ +.|||+|++||.|+.|.. ...|...+ ......+...|++.|
T Consensus 512 ~~--~~l~~~l~~f~~~~rllitgTPlQNs----ikEL~sLl~Fl~P~kf~~-~~~f~~~~----~~~~e~~~~~L~~~L 580 (1373)
T KOG0384|consen 512 DE--SKLYESLNQFKMNHRLLITGTPLQNS----LKELWSLLHFLMPGKFDS-WDEFLEEF----DEETEEQVRKLQQIL 580 (1373)
T ss_pred hH--HHHHHHHHHhcccceeeecCCCcccc----HHHHHHHhcccCCCCCCc-HHHHHHhh----cchhHHHHHHHHHHh
Confidence 77 45566788889999999999999999 999999999999999995 67776655 445677888999999
Q ss_pred HhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHH
Q 001095 782 HRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLS 860 (1158)
Q Consensus 782 ~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~ 860 (1158)
+|+|+||.|+|+. .|||+.+.++.|+||+.|+.+|..+++.-.+.+-... +.+. ...+.+++-||++
T Consensus 581 ~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~--~g~~----------~~lLNimmELkKc 648 (1373)
T KOG0384|consen 581 KPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA--KGST----------PSLLNIMMELKKC 648 (1373)
T ss_pred hHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC--CCCC----------chHHHHHHHHHHh
Confidence 9999999999995 8999999999999999999999999876444332211 1111 2345678999999
Q ss_pred ccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCcc
Q 001095 861 CCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPE 940 (1158)
Q Consensus 861 c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e 940 (1158)
||||.++...+.. + +..... .... .
T Consensus 649 cNHpyLi~gaee~--~---~~~~~~---~~~d---~-------------------------------------------- 673 (1373)
T KOG0384|consen 649 CNHPYLIKGAEEK--I---LGDFRD---KMRD---E-------------------------------------------- 673 (1373)
T ss_pred cCCccccCcHHHH--H---HHhhhh---cchH---H--------------------------------------------
Confidence 9999988743211 1 110000 0000 0
Q ss_pred ccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEE
Q 001095 941 ILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAG 1020 (1158)
Q Consensus 941 ~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ 1020 (1158)
..+.+| -.|++..|+++|+.. ....|+|||||||++.+||+|+++|...|++|-|
T Consensus 674 -------------~L~~lI--------~sSGKlVLLDKLL~r----Lk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQR 728 (1373)
T KOG0384|consen 674 -------------ALQALI--------QSSGKLVLLDKLLPR----LKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQR 728 (1373)
T ss_pred -------------HHHHHH--------HhcCcEEeHHHHHHH----HhcCCceEEEhHHHHHHHHHHHHHHHHcCCccee
Confidence 001111 124556666666543 3778999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHhccCC--CeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEE
Q 001095 1021 MYSPMHSSNKIKSLDMFRHDA--SCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLA 1098 (1158)
Q Consensus 1021 ldG~t~~~~R~~~i~~F~~~~--~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi 1098 (1158)
|||+++.+-|+.+|++||.++ .+.+||+|+|||.||||+.|++||+||.+|||+.+.||.+|||||||++.|.|||||
T Consensus 729 LDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLV 808 (1373)
T KOG0384|consen 729 LDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLV 808 (1373)
T ss_pred ccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEe
Confidence 999999999999999999754 488888899999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHhHHHHHHHHhhhcCcccccccccCCHhhh
Q 001095 1099 MRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDF 1142 (1158)
Q Consensus 1099 ~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~~~~~~~~~~~l~dl 1142 (1158)
++|||||.|+++...|..+..+|.+-+...........++-++|
T Consensus 809 Tk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~EL 852 (1373)
T KOG0384|consen 809 TKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEEL 852 (1373)
T ss_pred cCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHH
Confidence 99999999999999999999999998876333344444444444
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=7.7e-73 Score=709.10 Aligned_cols=441 Identities=21% Similarity=0.333 Sum_probs=360.4
Q ss_pred ccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECcccHHHHHHH
Q 001095 560 GFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPSYLVDHWKTQ 631 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~sLl~qW~~E 631 (1158)
+.+++||..|+.|.+. ++.++.||||||+ ||||||+|+|+++. .+|+|||||++++.||.+|
T Consensus 168 ~~Lr~YQleGlnWLi~------l~~~g~gGILADE----MGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~E 237 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIR------LYENGINGILADE----MGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNE 237 (1033)
T ss_pred cchHHHHHHHHHHHHH------HHhcCCCEEEEeC----CCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHH
Confidence 4589999999976542 3557789999995 99999999999863 3799999999999999999
Q ss_pred HHhhcCCCCeEEEEecCCCCcccc-----cccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHH
Q 001095 632 IQQHVRPGQLHLFVWTDHKKPSAH-----SLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLT 706 (1158)
Q Consensus 632 i~k~~~~~~l~v~v~~g~~~~~~~-----~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t 706 (1158)
|.+|++. +++++|+|....... .....+|||||||+++.++ ...|..+.|++|||||||+|||.. +
T Consensus 238 i~kw~p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e-----~~~L~k~~W~~VIvDEAHrIKN~~--S 308 (1033)
T PLN03142 238 IRRFCPV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE-----KTALKRFSWRYIIIDEAHRIKNEN--S 308 (1033)
T ss_pred HHHHCCC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH-----HHHhccCCCCEEEEcCccccCCHH--H
Confidence 9999975 888888886543211 1124799999999999844 567888999999999999999977 4
Q ss_pred HHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHh
Q 001095 707 NKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMI 786 (1158)
Q Consensus 707 ~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~ml 786 (1158)
..+++++.+++.+||+|||||++|+ +.|||+|++||.|+.|++ ...|..+|..+..........+|+.+|.++|+
T Consensus 309 klskalr~L~a~~RLLLTGTPlqNn----l~ELwsLL~FL~P~~f~s-~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLFSTNYRLLITGTPLQNN----LHELWALLNFLLPEIFSS-AETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHhhcCcEEEEecCCCCCC----HHHHHHHHhcCCCCcCCC-HHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 5567888999999999999999999 999999999999999996 78888888776555556677889999999999
Q ss_pred hhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccC
Q 001095 787 SARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAG 865 (1158)
Q Consensus 787 RR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~ 865 (1158)
||+|+++. +|||+.+.+++|.||+.|+.+|..+.......+.. ..........++.||++|+||.
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~--------------g~~~~~LlnilmqLRk~cnHP~ 449 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA--------------GGERKRLLNIAMQLRKCCNHPY 449 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhc--------------cccHHHHHHHHHHHHHHhCCHH
Confidence 99999985 89999999999999999999999988654332211 1112234567889999999987
Q ss_pred CccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCC
Q 001095 866 HIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRP 945 (1158)
Q Consensus 866 ~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~ 945 (1158)
++.....+.
T Consensus 450 L~~~~ep~~----------------------------------------------------------------------- 458 (1033)
T PLN03142 450 LFQGAEPGP----------------------------------------------------------------------- 458 (1033)
T ss_pred hhhcccccC-----------------------------------------------------------------------
Confidence 542111000
Q ss_pred CCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001095 946 ENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM 1025 (1158)
Q Consensus 946 ~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t 1025 (1158)
.......+++ .+++..++..|+.. ....++||||||||+.++++|+++|...|+.|++|+|++
T Consensus 459 -----~~~~~e~lie--------~SgKl~lLdkLL~~----Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGst 521 (1033)
T PLN03142 459 -----PYTTGEHLVE--------NSGKMVLLDKLLPK----LKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNT 521 (1033)
T ss_pred -----cccchhHHhh--------hhhHHHHHHHHHHH----HHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 0000011111 12333444444332 245789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCCC--eeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001095 1026 HSSNKIKSLDMFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1026 ~~~~R~~~i~~F~~~~~--~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
+..+|+++|++||+++. +.+||+|+|||+|||||.|++||+||++|||+.+.||+||||||||+++|+||||+++|||
T Consensus 522 s~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 522 GGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred CHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999999997543 4556666999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhc
Q 001095 1104 EEQMLEFLQDTDRCRRLLKEELV 1126 (1158)
Q Consensus 1104 EE~Il~~l~~K~~l~~~v~~~~~ 1126 (1158)
||+|++++..|+.+.+.|.+...
T Consensus 602 EEkIlera~~Kl~Ld~~Vi~~g~ 624 (1033)
T PLN03142 602 EEKVIERAYKKLALDALVIQQGR 624 (1033)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999988887543
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-73 Score=672.46 Aligned_cols=547 Identities=19% Similarity=0.334 Sum_probs=394.6
Q ss_pred CcccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc--------CCEEEEECcccHHHHH
Q 001095 558 TQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS--------RATLIVVPSYLVDHWK 629 (1158)
Q Consensus 558 ~~~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s--------~~tLIVvP~sLl~qW~ 629 (1158)
.++-+|.||..||.|. .-+|.++++|||||| ||||||+|+|+|++. ||.|||||.+++-||+
T Consensus 612 LrGqLReYQkiGLdWL------atLYeknlNGILADE----mGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWE 681 (1958)
T KOG0391|consen 612 LRGQLREYQKIGLDWL------ATLYEKNLNGILADE----MGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWE 681 (1958)
T ss_pred HHHHHHHHHHhhHHHH------HHHHHhcccceehhh----hcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhh
Confidence 5667999999999663 347889999999996 999999999999864 8999999999999999
Q ss_pred HHHHhhcCCCCeEEEEecCCCCcccccc-----cCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCch
Q 001095 630 TQIQQHVRPGQLHLFVWTDHKKPSAHSL-----AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN 704 (1158)
Q Consensus 630 ~Ei~k~~~~~~l~v~v~~g~~~~~~~~l-----~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s 704 (1158)
-||++|++. ++++.|.|..+...... -..|.|.||||..+. .+...|.+..|.++||||||+|||..
T Consensus 682 MElKRwcPg--lKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~-----qd~~AFkrkrWqyLvLDEaqnIKnfk- 753 (1958)
T KOG0391|consen 682 MELKRWCPG--LKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVF-----QDLTAFKRKRWQYLVLDEAQNIKNFK- 753 (1958)
T ss_pred HHHhhhCCc--ceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHH-----hHHHHHHhhccceeehhhhhhhcchh-
Confidence 999999987 99999999755432221 125889999999998 45667889999999999999999976
Q ss_pred HHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhh-------hHHHHHHH
Q 001095 705 LTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAE-------MEEGRSRL 777 (1158)
Q Consensus 705 ~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~-------~~~~~~~L 777 (1158)
..+++++..+++.+|++|||||+||+ +.|||+||+||.|..|.+ ...|+.+|.+|+..- +..-..+|
T Consensus 754 -sqrWQAllnfnsqrRLLLtgTPLqNs----lmELWSLmhFLmP~~f~s-hd~fk~wfsnPltgmiEgsqeyn~klV~RL 827 (1958)
T KOG0391|consen 754 -SQRWQALLNFNSQRRLLLTGTPLQNS----LMELWSLMHFLMPQTFAS-HDIFKPWFSNPLTGMIEGSQEYNHKLVIRL 827 (1958)
T ss_pred -HHHHHHHhccchhheeeecCCchhhH----HHHHHHHHHHhhchhhhh-hhhHHHHhcCcchhhcccchhhchHHHHHH
Confidence 57799999999999999999999999 999999999999999986 788999999987542 23456789
Q ss_pred HHHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHH
Q 001095 778 LQLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRN 856 (1158)
Q Consensus 778 ~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~ 856 (1158)
+++|++|++||.|.|+. +||.|.++++.|.||..|+.+|+++..+-.. ...|...+.......++.
T Consensus 828 HkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~T-------------KetLkSGhfmsVlnilmq 894 (1958)
T KOG0391|consen 828 HKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGT-------------KETLKSGHFMSVLNILMQ 894 (1958)
T ss_pred HHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccch-------------hhHhhcCchhHHHHHHHH
Confidence 99999999999999984 8999999999999999999999998754221 223445566667788999
Q ss_pred HHHHccccCCcccccc-------------chhHHHHHHHHHHcCCCcc--------------------------------
Q 001095 857 LRLSCCVAGHIKVTDA-------------GEDIQETMDVLVENGLDPL-------------------------------- 891 (1158)
Q Consensus 857 LR~~c~h~~~~~~~~~-------------~~~~~~~l~~l~~~~~~~~-------------------------------- 891 (1158)
||++||||+++....- ..++...+-.+......+.
T Consensus 895 LrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ 974 (1958)
T KOG0391|consen 895 LRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQ 974 (1958)
T ss_pred HHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhccccccccccc
Confidence 9999999988764311 1112122222211111000
Q ss_pred ----------------------------hHH-----H-----------HHHHH-----hhhcC----------CCc----
Q 001095 892 ----------------------------SQE-----Y-----------AFIKY-----NLLNG----------GNC---- 908 (1158)
Q Consensus 892 ----------------------------s~~-----~-----------~~l~~-----~l~~~----------~~c---- 908 (1158)
+++ . ..++. .+.+. ..|
T Consensus 975 ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~ 1054 (1958)
T KOG0391|consen 975 LSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQ 1054 (1958)
T ss_pred ccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccc
Confidence 000 0 00000 00000 000
Q ss_pred ----c-------------------------------------------------------------ch----hhhhhhhc
Q 001095 909 ----L-------------------------------------------------------------RH----ILCLDCVA 919 (1158)
Q Consensus 909 ----~-------------------------------------------------------------~h----~~C~~c~~ 919 (1158)
. .| +.|...-.
T Consensus 1055 ~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrq 1134 (1958)
T KOG0391|consen 1055 LQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQ 1134 (1958)
T ss_pred cccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHH
Confidence 0 00 00000000
Q ss_pred ----------cc--------cCCCCCCC------------------CCc---------ccccCCccccCCC-----CCCC
Q 001095 920 ----------MD--------SEKCSLPG------------------CGF---------LYEMQSPEILTRP-----ENPN 949 (1158)
Q Consensus 920 ----------~~--------~~~~~~p~------------------C~~---------~~~~~~~e~l~~~-----~~~~ 949 (1158)
.+ ...|..|. |+. .+.+..+-.++.+ ..+.
T Consensus 1135 l~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~pp 1214 (1958)
T KOG0391|consen 1135 LKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPP 1214 (1958)
T ss_pred HHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCC
Confidence 00 00111111 000 0000001011100 0000
Q ss_pred CCCCCChhhhhh------ccccc------------------cccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHH
Q 001095 950 PKWPVPQDLIEL------QPSYR------------------QWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIH 1005 (1158)
Q Consensus 950 ~~~~~~~~lie~------~~~~~------------------~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld 1005 (1158)
+-+.--..++.. .+.+. ++..++..-+..|+.. ....|++||||+|++.|||
T Consensus 1215 p~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQ----Lk~eghRvLIfTQMtkmLD 1290 (1958)
T KOG0391|consen 1215 PLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQ----LKSEGHRVLIFTQMTKMLD 1290 (1958)
T ss_pred cccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHH----HHhcCceEEehhHHHHHHH
Confidence 000001111111 11111 1222332222222222 3678999999999999999
Q ss_pred HHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHhccc
Q 001095 1006 VIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAH 1084 (1158)
Q Consensus 1006 ~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRah 1084 (1158)
+|+.+|..+|+.|+++||+++.++|+.++++||.|..+.++|+| ++||+|+||++|++|||||.+|||+++.||.+|+|
T Consensus 1291 VLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrCh 1370 (1958)
T KOG0391|consen 1291 VLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCH 1370 (1958)
T ss_pred HHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHH
Confidence 99999999999999999999999999999999999998888877 89999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhhcCcccccccccCCHhhhhhhhh
Q 001095 1085 RMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDFAESNY 1147 (1158)
Q Consensus 1085 RiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~~~~~~~~~~~l~dl~~~~~ 1147 (1158)
||||+|+|+|||||++.||||+|++...+|+.+.++++++.+-.- .-...+++.||++...
T Consensus 1371 RIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt--~ff~q~ti~dLFd~~~ 1431 (1958)
T KOG0391|consen 1371 RIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTT--AFFKQRTIRDLFDVYL 1431 (1958)
T ss_pred hhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccH--HHHhhhhHHHHhcCCC
Confidence 999999999999999999999999999999999999888765432 3344566777777643
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-72 Score=638.65 Aligned_cols=511 Identities=20% Similarity=0.336 Sum_probs=372.9
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc--------CCEEEEECcccHHHHHHHHH
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS--------RATLIVVPSYLVDHWKTQIQ 633 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s--------~~tLIVvP~sLl~qW~~Ei~ 633 (1158)
++.||..||.|. ..+|.++.+|||||+ ||||||+|+|++++. ||+|||+|+|++.||.+||.
T Consensus 568 LKEYQlkGLnWL------vnlYdqGiNGILADe----MGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEis 637 (1185)
T KOG0388|consen 568 LKEYQLKGLNWL------VNLYDQGINGILADE----MGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEIS 637 (1185)
T ss_pred hHHHhhccHHHH------HHHHHccccceehhh----hccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHH
Confidence 666666666442 236788899999995 999999999999864 89999999999999999999
Q ss_pred hhcCCCCeEEEEecCCCCcc-----------cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCC
Q 001095 634 QHVRPGQLHLFVWTDHKKPS-----------AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSS 702 (1158)
Q Consensus 634 k~~~~~~l~v~v~~g~~~~~-----------~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~ 702 (1158)
+|+|. ++++-|-|....+ .......|+||||||+++. .+...|..+.|.++||||||.||++
T Consensus 638 rFlP~--~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvV-----tDeky~qkvKWQYMILDEAQAIKSS 710 (1185)
T KOG0388|consen 638 RFLPS--FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVV-----TDEKYLQKVKWQYMILDEAQAIKSS 710 (1185)
T ss_pred HhCcc--ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeee-----chHHHHHhhhhhheehhHHHHhhhh
Confidence 99986 9999998854321 1223458999999999998 4567889999999999999999996
Q ss_pred chHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhh-------hHHHHH
Q 001095 703 LNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAE-------MEEGRS 775 (1158)
Q Consensus 703 ~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~-------~~~~~~ 775 (1158)
. +.+.+.+.+.++++|++||||||||+ ..|||.||+|+.|..|.+ ...|.++|.+.++.. +.....
T Consensus 711 s--S~RWKtLLsF~cRNRLLLTGTPIQNs----MqELWALLHFIMPsLFDs-hneFseWFSKdIEshAe~~~tlneqqL~ 783 (1185)
T KOG0388|consen 711 S--SSRWKTLLSFKCRNRLLLTGTPIQNS----MQELWALLHFIMPSLFDS-HNEFSEWFSKDIESHAEMNTTLNEQQLQ 783 (1185)
T ss_pred h--hhHHHHHhhhhccceeeecCCccchH----HHHHHHHHHHHhhHhhhc-hHHHHHHHhhhhHhHHHhcCCcCHHHHH
Confidence 5 67788999999999999999999999 999999999999999996 788999999988764 356678
Q ss_pred HHHHHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHH
Q 001095 776 RLLQLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTI 854 (1158)
Q Consensus 776 ~L~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l 854 (1158)
+|+.+|.+||+||.|+|+. +|-.+++..+.|+||..|+.+|+.+...+... ....++
T Consensus 784 RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~----------------------E~~~~v 841 (1185)
T KOG0388|consen 784 RLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSM----------------------EMENLV 841 (1185)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHH----------------------HHHHHH
Confidence 9999999999999999986 89999999999999999999999987665421 111368
Q ss_pred HHHHHHccccCCccccccc----hhHHHHHHHHHHcCCCcch--------------------------------------
Q 001095 855 RNLRLSCCVAGHIKVTDAG----EDIQETMDVLVENGLDPLS-------------------------------------- 892 (1158)
Q Consensus 855 ~~LR~~c~h~~~~~~~~~~----~~~~~~l~~l~~~~~~~~s-------------------------------------- 892 (1158)
..||++|+||.++...... ..+...+..+...|..+..
T Consensus 842 mQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~ 921 (1185)
T KOG0388|consen 842 MQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGP 921 (1185)
T ss_pred HHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCc
Confidence 8999999999776532110 0000001111111111100
Q ss_pred ---------------------HH-HHHHHHhhhcCCCcc----chhhhhhhhc-cccCCCCCCCCCcc-cccCCccccCC
Q 001095 893 ---------------------QE-YAFIKYNLLNGGNCL----RHILCLDCVA-MDSEKCSLPGCGFL-YEMQSPEILTR 944 (1158)
Q Consensus 893 ---------------------~~-~~~l~~~l~~~~~c~----~h~~C~~c~~-~~~~~~~~p~C~~~-~~~~~~e~l~~ 944 (1158)
++ ...+...+..-.... ..+.-..... .....|..|....+ ..+++...+..
T Consensus 922 ~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~Pe 1001 (1185)
T KOG0388|consen 922 NAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPE 1001 (1185)
T ss_pred chhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCC
Confidence 00 000000111000000 0000000000 01112333333322 11211111110
Q ss_pred CCCCCCCCCCChhhhhhccccccccC--chHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEe
Q 001095 945 PENPNPKWPVPQDLIELQPSYRQWSN--TNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMY 1022 (1158)
Q Consensus 945 ~~~~~~~~~~~~~lie~~~~~~~~~s--~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ld 1022 (1158)
-...++..+.-..+. .|....+-+ ++...++.|+. +....|++||+|.|++.|+|+|+++|...|+.|+++|
T Consensus 1002 Id~E~~~~pLn~~i~--~Ppm~~FitdSgKL~~LDeLL~----kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLD 1075 (1185)
T KOG0388|consen 1002 IDLENRHIPLNTTIY--VPPMNTFITDSGKLVVLDELLP----KLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLD 1075 (1185)
T ss_pred CCccccCccccccee--cCcHHhhhccccceeeHHHHHH----HhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEec
Confidence 001111111111111 222222222 22222233332 2478999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001095 1023 SPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1023 G~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
|+....+|..++..||..+.+++||+|+|||.|||||+|++|||||.+|||+.+.||++|+||+|||++|+||||+++||
T Consensus 1076 GSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1076 GSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999766777777799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhh
Q 001095 1103 VEEQMLEFLQDTDRCRRLLKEE 1124 (1158)
Q Consensus 1103 IEE~Il~~l~~K~~l~~~v~~~ 1124 (1158)
|||+|+++..+|..+.++|..+
T Consensus 1156 vEEk~l~rA~qK~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1156 VEEKVLERANQKDEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHhhhHHHHHHHHHcC
Confidence 9999999999999999998876
No 10
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7.3e-72 Score=639.16 Aligned_cols=493 Identities=24% Similarity=0.392 Sum_probs=364.4
Q ss_pred cCCCcEEeecccCCcccchHHHHHHHHhc---------------CCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCC
Q 001095 585 KTLDNLAFDLAALRLALCEPLDSVRLYLS---------------RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDH 649 (1158)
Q Consensus 585 ~~~ggILaDelad~mGLGKTlqaiall~s---------------~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~ 649 (1158)
...|||||| +||||||+.+|+++++ .+||||||++|+.||..|+.+.+....++||+|||.
T Consensus 344 ~~~GGILad----dmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~ 419 (901)
T KOG4439|consen 344 PPSGGILAD----DMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGP 419 (901)
T ss_pred CCCCccccc----ccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCC
Confidence 346899999 5999999999999863 369999999999999999999999899999999998
Q ss_pred CC-cccccccCCCCEEEeechhhhh----hhh-cCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEE
Q 001095 650 KK-PSAHSLAWDYDVVITTFNRLSA----EWG-RRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLL 723 (1158)
Q Consensus 650 ~~-~~~~~l~~~~DVVItTY~~L~~----e~~-~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlL 723 (1158)
++ ......+.+||||||||+.+.+ +.. ....++|..+.|.||||||||.|||++ +....+++.|.+.+||+|
T Consensus 420 n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~--tq~S~AVC~L~a~~RWcl 497 (901)
T KOG4439|consen 420 NKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN--TQCSKAVCKLSAKSRWCL 497 (901)
T ss_pred ccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc--hhHHHHHHHHhhcceeec
Confidence 74 3333445599999999999986 111 245789999999999999999999987 566779999999999999
Q ss_pred eCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhccccc------ccCC
Q 001095 724 TGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL------QTIP 797 (1158)
Q Consensus 724 TGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~dv------~~LP 797 (1158)
|||||||+ .-|+|+|+.||+..+|++ ...|++.+..+- ..+..++.-+..+.|+||||..+ ..||
T Consensus 498 TGTPiqNn----~~DvysLlrFLr~~pF~D-~~~Wke~i~~~s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp 568 (901)
T KOG4439|consen 498 TGTPIQNN----LWDVYSLLRFLRCPPFGD-LKQWKENIDNMS----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLP 568 (901)
T ss_pred ccCccccc----hhHHHHHHHHhcCCCcch-HHHHHHhccCcc----ccchhhhhhhhhhHHhhhhHHhhccccccccCc
Confidence 99999999 999999999999999997 899998875443 34456677788899999998664 4799
Q ss_pred CceEEEEEecCCHHHHHHHHHHHHHHHHHhhh-----hccCC------------------------CchhhhhcCchhhh
Q 001095 798 LCIKEVTFLNFTEEHAGTYNELVVTVRRNILM-----ADWND------------------------PSHVESLLNPKQWK 848 (1158)
Q Consensus 798 pk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~-----~~~~~------------------------~~~~esll~~~~~~ 848 (1158)
++...++.++|+..|...|+-+.+..++-... .+++. +.+...--+.....
T Consensus 569 ~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s 648 (901)
T KOG4439|consen 569 EKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMS 648 (901)
T ss_pred ccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHH
Confidence 99999999999999999999887654432211 01100 00000000112223
Q ss_pred hHHHHHHHHHHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCC
Q 001095 849 FRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLP 928 (1158)
Q Consensus 849 ~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p 928 (1158)
..+.+|.+|||+|||+++.+.....++++ -.+.+...++ .+.........- .+...|...
T Consensus 649 ~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~-------~~g~~~sde~--~~e~~~l~el~k-----------~~~T~~~~D 708 (901)
T KOG4439|consen 649 HILVLLLRLRQACCHFGLLKAALDPEEFQ-------MNGGDDSDEE--QLEEDNLAELEK-----------NDETDCSDD 708 (901)
T ss_pred HHHHHHHHHHHHhcCcchhccccCHHHhh-------hcCcchhhhh--hhhhhHHHhhhh-----------ccccccccc
Confidence 46778999999999998887544333221 1222221111 111100000000 000001111
Q ss_pred CCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCch-HHHHHHhcCcccccccCCCCeEEEEeccHHHHHHH
Q 001095 929 GCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVI 1007 (1158)
Q Consensus 929 ~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~-~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L 1007 (1158)
+|.. .|.. .+..+.+.. ..+.+ ..+++.+..+ .....+|+||.|||+.+|+++
T Consensus 709 ~~ed----------------~p~~-~~~q~Fe~~-----r~S~Ki~~~l~~le~i----~~~skeK~viVSQwtsvLniv 762 (901)
T KOG4439|consen 709 NCED----------------LPTA-FPDQAFEPD-----RPSCKIAMVLEILETI----LTSSKEKVVIVSQWTSVLNIV 762 (901)
T ss_pred cccc----------------cccc-chhhhcccc-----cchhHHHHHHHHHHHH----hhcccceeeehhHHHHHHHHH
Confidence 1110 0000 112221111 11222 2222233222 367889999999999999999
Q ss_pred HHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCC-eeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHhcccc
Q 001095 1008 EQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDAS-CLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR 1085 (1158)
Q Consensus 1008 ~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~-~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahR 1085 (1158)
+..|.+.|+.|..++|....++|+.+++.||...+ .+|+|+| .|||+||||++|||+|++|++|||+.|+||.+||+|
T Consensus 763 ~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR 842 (901)
T KOG4439|consen 763 RKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYR 842 (901)
T ss_pred HHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997654 8999988 799999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhhcCcccccccccCCHhhh
Q 001095 1086 MGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPEREGARSHRTLHDF 1142 (1158)
Q Consensus 1086 iGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~~~~~~~~~~~l~dl 1142 (1158)
+||+|+|+||||+++||||++|..+|..|..++..|..+-. .......++.||
T Consensus 843 ~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~----tr~~~kLT~adl 895 (901)
T KOG4439|consen 843 MGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSA----TRKMNKLTLADL 895 (901)
T ss_pred hcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcc----ccccccccHHHH
Confidence 99999999999999999999999999999987776665221 124556666665
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3e-66 Score=613.36 Aligned_cols=448 Identities=21% Similarity=0.327 Sum_probs=365.2
Q ss_pred cccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--------cCCEEEEECcccHHHHHH
Q 001095 559 QGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--------SRATLIVVPSYLVDHWKT 630 (1158)
Q Consensus 559 ~~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--------s~~tLIVvP~sLl~qW~~ 630 (1158)
.+-++.||..||.|.+ .||.++++|||||| ||||||+|+|+++. .+|.|||||.+++.+|..
T Consensus 392 GG~Lk~YQl~GLqWmV------SLyNNnLNGILADE----MGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~ 461 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMV------SLYNNNLNGILADE----MGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSS 461 (1157)
T ss_pred CCCCchhhhhhhHHHh------hccCCCcccccchh----cccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchh
Confidence 3469999999997744 58999999999996 99999999999974 489999999999999999
Q ss_pred HHHhhcCCCCeEEEEecCCCCcc----cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHH
Q 001095 631 QIQQHVRPGQLHLFVWTDHKKPS----AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLT 706 (1158)
Q Consensus 631 Ei~k~~~~~~l~v~v~~g~~~~~----~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t 706 (1158)
||.+|.|. +..++|.|....+ ......+|+|++|||+.+. +++..|..++|..+||||+|++||..+
T Consensus 462 Ef~kWaPS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyii-----kdk~lLsKI~W~yMIIDEGHRmKNa~~-- 532 (1157)
T KOG0386|consen 462 EFPKWAPS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYII-----KDKALLSKISWKYMIIDEGHRMKNAIC-- 532 (1157)
T ss_pred hccccccc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhc-----CCHHHHhccCCcceeecccccccchhh--
Confidence 99999987 9999999864322 2233469999999999998 578899999999999999999999763
Q ss_pred HHHHHHH-HcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhH----------HHHH
Q 001095 707 NKLQMAI-SLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEME----------EGRS 775 (1158)
Q Consensus 707 ~~~~~~~-~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~----------~~~~ 775 (1158)
+....+. .-.+.+|++|||||+||+ +.|||+||+||-|.+|.+ ...|.++|..||..... -...
T Consensus 533 KLt~~L~t~y~~q~RLLLTGTPLQN~----LpELWaLLNFlLP~IFnS-~~~FeqWFN~PFantGek~eLteEEtlLIIr 607 (1157)
T KOG0386|consen 533 KLTDTLNTHYRAQRRLLLTGTPLQNN----LPELWALLNFLLPNIFNS-CKAFEQWFNQPFANTGEKVELTEEETLLIIR 607 (1157)
T ss_pred HHHHHhhccccchhhhhhcCChhhhc----cHHHHHHHHHhccchhhh-HhHHHHHhhhhhhhcCCcccccchHHHHHHH
Confidence 3333333 457889999999999999 999999999999999996 88999999999976542 2356
Q ss_pred HHHHHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHH
Q 001095 776 RLLQLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTI 854 (1158)
Q Consensus 776 ~L~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l 854 (1158)
+|+++|+||++||.|+++. +||.+++.++.|+||.-|+.+|..+...-. + . ++..-..+..+.....+
T Consensus 608 RLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~--l-~--------~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 608 RLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQ--L-L--------KDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred HHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCC--C-C--------cCchhccccchhhhhHh
Confidence 8999999999999999985 899999999999999999999987764311 0 0 00111223345566779
Q ss_pred HHHHHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCccc
Q 001095 855 RNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLY 934 (1158)
Q Consensus 855 ~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~ 934 (1158)
..||++|+||....-.+. .| .
T Consensus 677 mqLRKiCNHP~lf~~ve~----------------------------------~~----------------------~--- 697 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVEN----------------------------------SY----------------------T--- 697 (1157)
T ss_pred HHHHHhcCCchhhhhhcc----------------------------------cc----------------------c---
Confidence 999999999975421000 00 0
Q ss_pred ccCCccccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHC
Q 001095 935 EMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVA 1014 (1158)
Q Consensus 935 ~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~ 1014 (1158)
+.+.. .+++. .+++-.|.+.++- +....|++|+.|+|.+.++++++++|.-.
T Consensus 698 ---------------~~~~~-~dL~R--------~sGKfELLDRiLP----KLkatgHRVLlF~qMTrlmdimEdyL~~~ 749 (1157)
T KOG0386|consen 698 ---------------LHYDI-KDLVR--------VSGKFELLDRILP----KLKATGHRVLLFSQMTRLMDILEDYLQIR 749 (1157)
T ss_pred ---------------cccCh-hHHHH--------hccHHHHHHhhhH----HHHhcCcchhhHHHHHHHHHHHHHHHhhh
Confidence 00000 12221 1233444444442 34789999999999999999999999999
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhccCCC--eeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcE
Q 001095 1015 GIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092 (1158)
Q Consensus 1015 gi~~~~ldG~t~~~~R~~~i~~F~~~~~--~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V 1092 (1158)
+++|.++||+|..++|...++.||.++. +.+|++++|||.|||||.|++||+||++|||..+.||.+|+|||||+++|
T Consensus 750 ~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~ev 829 (1157)
T KOG0386|consen 750 EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEV 829 (1157)
T ss_pred hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhhe
Confidence 9999999999999999999999998655 44455569999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhhcCc
Q 001095 1093 HVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKP 1128 (1158)
Q Consensus 1093 ~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~ 1128 (1158)
.|+||++-+++||+|++.+..|++.+..++++..-+
T Consensus 830 Rv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fd 865 (1157)
T KOG0386|consen 830 RVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFD 865 (1157)
T ss_pred eeeeeehhhHHHHHHHHHHHHhcCchHhhhhccccc
Confidence 999999999999999999999998887777765443
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=4.2e-63 Score=594.23 Aligned_cols=465 Identities=20% Similarity=0.260 Sum_probs=353.0
Q ss_pred CcccchhhHHhhhHHHHhhcccccccc-cCCCcEEeecccCCcccchHHHHHHHHhc------------CCEEEEECccc
Q 001095 558 TQGFHKIFQAFGLIRRVEKGITRWYYP-KTLDNLAFDLAALRLALCEPLDSVRLYLS------------RATLIVVPSYL 624 (1158)
Q Consensus 558 ~~~~~~~~Q~~Gl~~~~e~~~~~~l~~-~~~ggILaDelad~mGLGKTlqaiall~s------------~~tLIVvP~sL 624 (1158)
....++|||.+|+.+..++-... -.| ..-|+|+|| +||+|||+|+|+++.+ ...|||||++|
T Consensus 235 l~~~LrPHQ~EG~~FL~knl~g~-~~~~~~~GCImAd----~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sL 309 (776)
T KOG0390|consen 235 LKKILRPHQREGFEFLYKNLAGL-IRPKNSGGCIMAD----EPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSL 309 (776)
T ss_pred HhhhcCchHHHHHHHHHhhhhcc-cccCCCCceEeeC----CCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHH
Confidence 45668999999997776653222 112 456778777 5999999999999753 57899999999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEecCCCCcccc---------cccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEcc
Q 001095 625 VDHWKTQIQQHVRPGQLHLFVWTDHKKPSAH---------SLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDE 695 (1158)
Q Consensus 625 l~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~---------~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDE 695 (1158)
+.+|.+||.||..+..+..+.+.+..+.... ...-.+-|.|.||++++. +...+....+++||+||
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~-----~~~~il~~~~glLVcDE 384 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASD-----YCRKILLIRPGLLVCDE 384 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHH-----HHHHHhcCCCCeEEECC
Confidence 9999999999998767888888776653100 001145688999999983 35567788999999999
Q ss_pred ccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhh-----
Q 001095 696 GHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEM----- 770 (1158)
Q Consensus 696 AH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~----- 770 (1158)
||++||..+ ..++++.++++++|++|||||+||+ +.|++++++|.+|+.+++ ...|.+.+..|+..+.
T Consensus 385 GHrlkN~~s--~~~kaL~~l~t~rRVLLSGTp~QNd----l~EyFnlL~fvrP~~Lgs-~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 385 GHRLKNSDS--LTLKALSSLKTPRRVLLTGTPIQND----LKEYFNLLDFVRPGFLGS-ISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CCCccchhh--HHHHHHHhcCCCceEEeeCCccccc----HHHHHHHHhhcChhhccc-hHHHHHHhhcccccccCCCcc
Confidence 999999764 4467899999999999999999999 999999999999999996 7888888877775532
Q ss_pred ------HHHHHHHHHHHHhHHhhhccccc-ccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcC
Q 001095 771 ------EEGRSRLLQLLHRCMISARKTDL-QTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLN 843 (1158)
Q Consensus 771 ------~~~~~~L~~lL~~~mlRR~K~dv-~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~ 843 (1158)
.+...+|..+...|++||+-..+ ..||++.++++.+.+|+.|..+|..+.......
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~----------------- 520 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMR----------------- 520 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhh-----------------
Confidence 12245677888999998888444 479999999999999999999999988753111
Q ss_pred chhhhhHHHHHHHHHHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccC
Q 001095 844 PKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSE 923 (1158)
Q Consensus 844 ~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~ 923 (1158)
....+.+..+..|.++|+||.++........
T Consensus 521 -~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~------------------------------------------------ 551 (776)
T KOG0390|consen 521 -TLKGYALELITKLKKLCNHPSLLLLCEKTEK------------------------------------------------ 551 (776)
T ss_pred -hhhcchhhHHHHHHHHhcCHHhhcccccccc------------------------------------------------
Confidence 1112256678999999999987642111000
Q ss_pred CCCCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHH
Q 001095 924 KCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEH 1003 (1158)
Q Consensus 924 ~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ 1003 (1158)
... ...+..+..+.....+ .. -.+.+.++. .|..++.........|+++.|+|+.+
T Consensus 552 --------e~~-~~~~~~~~~~~~~~~~-------------~~-~~~ks~kl~-~L~~ll~~~~ek~~~~~v~Isny~~t 607 (776)
T KOG0390|consen 552 --------EKA-FKNPALLLDPGKLKLD-------------AG-DGSKSGKLL-VLVFLLEVIREKLLVKSVLISNYTQT 607 (776)
T ss_pred --------ccc-ccChHhhhcccccccc-------------cc-cchhhhHHH-HHHHHHHHHhhhcceEEEEeccHHHH
Confidence 000 0000000000000000 00 001112222 11111111235567899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCe-eEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHh
Q 001095 1004 IHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASC-LALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVIS 1081 (1158)
Q Consensus 1004 ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~-~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAig 1081 (1158)
+++++..+.-.|+.++++||+|+..+|+.+|++||++++. .|||+| +|||+||||++|+|||+|||+|||+.++||++
T Consensus 608 ldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAma 687 (776)
T KOG0390|consen 608 LDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMA 687 (776)
T ss_pred HHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHH
Confidence 9999999999999999999999999999999999987654 555555 99999999999999999999999999999999
Q ss_pred cccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhhcCcc
Q 001095 1082 RAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELVKPE 1129 (1158)
Q Consensus 1082 RahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~~~~ 1129 (1158)
||||.||+|+|+||||++.|||||+||++|..|..+..++.+.-.+.+
T Consensus 688 R~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~ 735 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVE 735 (776)
T ss_pred HhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccc
Confidence 999999999999999999999999999999999888777766554443
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=8.4e-60 Score=548.54 Aligned_cols=535 Identities=18% Similarity=0.224 Sum_probs=364.1
Q ss_pred ccchhhHHhhhHHHHhhc---ccccccccCCCcEEeecccCCcccchHHHHHHHHhc---------CCEEEEECcccHHH
Q 001095 560 GFHKIFQAFGLIRRVEKG---ITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS---------RATLIVVPSYLVDH 627 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~---~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s---------~~tLIVvP~sLl~q 627 (1158)
.-++|||..|+.+..+.. +.+-.-..+.|||||. -||||||+|.++|+.. ++.|||||.+++.|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAH----cMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~N 742 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAH----CMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALN 742 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHH----hhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHH
Confidence 348899999996544432 2222345788999988 5999999999998642 79999999999999
Q ss_pred HHHHHHhhcCC----CCeEEEEecCCCCcc-----cccccCCCCEEEeechhhhhhhhcCC----------CCCcccccc
Q 001095 628 WKTQIQQHVRP----GQLHLFVWTDHKKPS-----AHSLAWDYDVVITTFNRLSAEWGRRK----------KSPMMQVHW 688 (1158)
Q Consensus 628 W~~Ei~k~~~~----~~l~v~v~~g~~~~~-----~~~l~~~~DVVItTY~~L~~e~~~~~----------~~~L~~~~w 688 (1158)
|.+||++|.+. +.+.|+....-+++. ......+..|.|+.|++++.-...+. ...|..-..
T Consensus 743 W~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGP 822 (1567)
T KOG1015|consen 743 WMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGP 822 (1567)
T ss_pred HHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCC
Confidence 99999999874 256666655544321 12223466899999999986532211 234566788
Q ss_pred eEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchh
Q 001095 689 LRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEA 768 (1158)
Q Consensus 689 ~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~ 768 (1158)
|+||+||||.|||.. +...+++..+++++|++|||||+||+ +.|+|.+++|+.|+++|+ ...|.+.|.+||++
T Consensus 823 D~vVCDE~HiLKNek--sa~Skam~~irtkRRI~LTGTPLQNN----LmEY~CMVnFVKe~lLGs-~~EfrNRFvNpI~n 895 (1567)
T KOG1015|consen 823 DFVVCDEGHILKNEK--SAVSKAMNSIRTKRRIILTGTPLQNN----LMEYHCMVNFVKENLLGS-IKEFRNRFVNPIQN 895 (1567)
T ss_pred CeEEecchhhhccch--HHHHHHHHHHHhheeEEeecCchhhh----hHHHHHHHHhcccccccC-cHHHHHhhcCcccc
Confidence 999999999999965 66678999999999999999999999 999999999999999997 89999999999998
Q ss_pred hh------------HHHHHHHHHHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCC
Q 001095 769 EM------------EEGRSRLLQLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDP 835 (1158)
Q Consensus 769 ~~------------~~~~~~L~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~ 835 (1158)
+. ......|+.+|..++-|+.-.-+. .|||++++++.+.||+.|..+|+.+++... ...++.
T Consensus 896 Gq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~-----~~G~d~ 970 (1567)
T KOG1015|consen 896 GQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLT-----GVGNDS 970 (1567)
T ss_pred CccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcc-----ccCCcc
Confidence 74 223346888888888777665553 799999999999999999999998887311 111111
Q ss_pred chhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchhHHHHHHHHHHcCCC-cchHHHHHHHHhhhcCCCccch---
Q 001095 836 SHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLD-PLSQEYAFIKYNLLNGGNCLRH--- 911 (1158)
Q Consensus 836 ~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~-~~s~~~~~l~~~l~~~~~c~~h--- 911 (1158)
.-.....+..+..+..|+++-+||..+.+......-...+..-...+++ ..+++. .-.+..+..|...
T Consensus 971 -----eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~---e~s~~s~d~~~~~ks~ 1042 (1567)
T KOG1015|consen 971 -----EGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDET---EMSLSSDDYTKKKKSG 1042 (1567)
T ss_pred -----ccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccc---cccccccchhhccccc
Confidence 1112244556778999999999999887654322111111000000111 000000 0000000001000
Q ss_pred -hh----hhhh---------hccccCCCCCCC----------CCcccccCCc--cccCCCCCCCCCCCCChhhhhhcccc
Q 001095 912 -IL----CLDC---------VAMDSEKCSLPG----------CGFLYEMQSP--EILTRPENPNPKWPVPQDLIELQPSY 965 (1158)
Q Consensus 912 -~~----C~~c---------~~~~~~~~~~p~----------C~~~~~~~~~--e~l~~~~~~~~~~~~~~~lie~~~~~ 965 (1158)
.- ..+- .....++-+--+ -+..+.+... .....+.++.|.| ..+++.....-
T Consensus 1043 ~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew--~kd~v~e~d~~ 1120 (1567)
T KOG1015|consen 1043 KKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEW--YKDFVTEADAE 1120 (1567)
T ss_pred ccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHh--HHhhhhhhhhh
Confidence 00 0000 000000000000 0000000000 0001111222221 12222211111
Q ss_pred ccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHC----------------------CCeEEEEeC
Q 001095 966 RQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVA----------------------GIKFAGMYS 1023 (1158)
Q Consensus 966 ~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~----------------------gi~~~~ldG 1023 (1158)
.--.|+++.|+-.++.+ ...-|+|+|||||....||+|+.+|... |..|.+|||
T Consensus 1121 v~~~SgKmiLLleIL~m----ceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDG 1196 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRM----CEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDG 1196 (1567)
T ss_pred hhhcCcceehHHHHHHH----HHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecC
Confidence 11223444444444433 3567899999999999999999999642 678999999
Q ss_pred CCCHHHHHHHHHHhccCCC--eeE-EEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1024 PMHSSNKIKSLDMFRHDAS--CLA-LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1024 ~t~~~~R~~~i~~F~~~~~--~~V-LL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
++...+|++..++||+..+ .++ ||+|+||+.|+||.+||+||+||-.|||+.+.|+|=|+||+||+|||+||||++.
T Consensus 1197 st~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1197 STTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred cccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 9999999999999998766 344 4555999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhh
Q 001095 1101 GTVEEQMLEFLQDTDRCRRLLKEE 1124 (1158)
Q Consensus 1101 ~TIEE~Il~~l~~K~~l~~~v~~~ 1124 (1158)
||+||+||++|-.|..+...|.+.
T Consensus 1277 GTmEeKIYkRQVTKqsls~RVVDe 1300 (1567)
T KOG1015|consen 1277 GTMEEKIYKRQVTKQSLSFRVVDE 1300 (1567)
T ss_pred ccHHHHHHHHHHhHhhhhhhhhhH
Confidence 999999999999999877666553
No 14
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.4e-59 Score=564.83 Aligned_cols=479 Identities=26% Similarity=0.417 Sum_probs=371.2
Q ss_pred ccCCCcEEeecccCCcccchHHHHHHHHhc--------------CCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCC
Q 001095 584 PKTLDNLAFDLAALRLALCEPLDSVRLYLS--------------RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDH 649 (1158)
Q Consensus 584 ~~~~ggILaDelad~mGLGKTlqaiall~s--------------~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~ 649 (1158)
..-.|||+|| +||+|||++++++++. +.+|||||.+++.||..|+.+...++.+.+++|+|
T Consensus 150 ~~~~ggIlad----d~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g- 224 (674)
T KOG1001|consen 150 QSLRGGILAD----DMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG- 224 (674)
T ss_pred CccccceEee----ccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCccceEEEEecc-
Confidence 4557899999 5999999999999752 46999999999999999998888888999999999
Q ss_pred CCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCC
Q 001095 650 KKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTP 729 (1158)
Q Consensus 650 ~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiq 729 (1158)
+......+ .+||||||||.++.+ +++..+.|.|||+||||.++|.+ +..+.+++.+.+.+||+|||||+|
T Consensus 225 r~kd~~el-~~~dVVltTy~il~~-------~~l~~i~w~Riildea~~ikn~~--tq~~~a~~~L~a~~RWcLtgtPiq 294 (674)
T KOG1001|consen 225 RTKDKSEL-NSYDVVLTTYDILKN-------SPLVKIKWLRIVLDEAHTIKNKD--TQIFKAVCQLDAKYRWCLTGTPIQ 294 (674)
T ss_pred cccccchh-cCCceEEeeHHHhhc-------ccccceeEEEEEeccccccCCcc--hHhhhhheeeccceeeeecCChhh
Confidence 33333344 499999999999973 78888999999999999999988 557788999999999999999999
Q ss_pred CCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhh-HHHHHHHHHHHHhHHhhhcccc------cccCCCceEE
Q 001095 730 NTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEM-EEGRSRLLQLLHRCMISARKTD------LQTIPLCIKE 802 (1158)
Q Consensus 730 N~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~-~~~~~~L~~lL~~~mlRR~K~d------v~~LPpk~e~ 802 (1158)
|+ +.|||+++.|+..++|.+ ...|...+..|+.... ..+...++.+|+.+|+||+|.. +..|||++..
T Consensus 295 n~----~~~lysl~~fl~~~p~~~-~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~ 369 (674)
T KOG1001|consen 295 NN----LDELYSLFKFLEIHPYCD-QNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVF 369 (674)
T ss_pred hh----HHHHHHHHHHhhcCCchh-hHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeE
Confidence 99 999999999999999996 8999999999999988 7888999999999999999852 5589999999
Q ss_pred EEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchhHHHHHHH
Q 001095 803 VTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDV 882 (1158)
Q Consensus 803 vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~ 882 (1158)
++.++++..++.+|..+....+.......+.+. -...+.+....+.+|||+|+|+.............
T Consensus 370 ~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~-------~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~----- 437 (674)
T KOG1001|consen 370 VTEVDLSKSERSAYKALKANSRNQFSNYANEGT-------VSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDS----- 437 (674)
T ss_pred eeeccccHhHHHHHHHHhhhhhhHHHHHhhhch-------hhhhHHHHHHHHHHHHHHccchHhhhhhhhccccc-----
Confidence 999999999999999998776654432222211 12344566677899999999997665321110000
Q ss_pred HHHcCCCcchHHHHHHHHhh---hcCCCcc----------chhhhhhhhccc---cCCCCCCCCCcccccCCccccCCCC
Q 001095 883 LVENGLDPLSQEYAFIKYNL---LNGGNCL----------RHILCLDCVAMD---SEKCSLPGCGFLYEMQSPEILTRPE 946 (1158)
Q Consensus 883 l~~~~~~~~s~~~~~l~~~l---~~~~~c~----------~h~~C~~c~~~~---~~~~~~p~C~~~~~~~~~e~l~~~~ 946 (1158)
.........+...+ ..+..|. +|.+|..|+... .....||.|+........-......
T Consensus 438 ------~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~ 511 (674)
T KOG1001|consen 438 ------GSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLP 511 (674)
T ss_pred ------cccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhccccc
Confidence 00000000111112 2233332 899999998732 2222578887654321110000000
Q ss_pred CCCCCCCCChhhhhhccccccccCch-HHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001095 947 NPNPKWPVPQDLIELQPSYRQWSNTN-TFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM 1025 (1158)
Q Consensus 947 ~~~~~~~~~~~lie~~~~~~~~~s~~-~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t 1025 (1158)
..... . .+ .+++ ..+...|. ..+.... .|+||||||+.++++++..|...|+.+.+++|.+
T Consensus 512 ~~~~~------~---~~-----~s~ki~~~~~~l~---~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~ 573 (674)
T KOG1001|consen 512 SIIND------L---LP-----ESSKIYAFLKILQ---AKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEM 573 (674)
T ss_pred chhhh------c---cc-----hhhhhHHHHHHHh---hccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhh
Confidence 00000 0 00 0111 11222222 1112222 4999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1026 HSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1026 ~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
+...|.+.+..|..++...|++++ +|||.||||++|+|||++||+|||+.|+|||+||||+||+|+|.|+||+..+|||
T Consensus 574 ~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtve 653 (674)
T KOG1001|consen 574 LMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVE 653 (674)
T ss_pred HHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHH
Q 001095 1105 EQMLEFLQDTDRCR 1118 (1158)
Q Consensus 1105 E~Il~~l~~K~~l~ 1118 (1158)
|+|++++++|+.+.
T Consensus 654 er~l~iq~~K~~~~ 667 (674)
T KOG1001|consen 654 ERILKIQEKKREYN 667 (674)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997543
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.9e-55 Score=565.32 Aligned_cols=467 Identities=26% Similarity=0.358 Sum_probs=362.2
Q ss_pred ccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc---------CCEEEEECcccHHHHHH
Q 001095 560 GFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS---------RATLIVVPSYLVDHWKT 630 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s---------~~tLIVvP~sLl~qW~~ 630 (1158)
..+++||..|+.|..+ .++....|||||| +||||||+|+++++.+ ++.|||||.+++.||.+
T Consensus 337 ~~lr~yq~~g~~wl~~-----~l~~~~~~~ilaD----~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~ 407 (866)
T COG0553 337 AELRPYQLEGVNWLSE-----LLRSNLLGGILAD----DMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKR 407 (866)
T ss_pred hhhHHHHHHHHHHHHH-----HHHhccCCCcccc----cccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHH
Confidence 4478999999966443 4566788999998 5999999999999863 69999999999999999
Q ss_pred HHHhhcCCCCeE-EEEecCCCC------cccccccC-----CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccc
Q 001095 631 QIQQHVRPGQLH-LFVWTDHKK------PSAHSLAW-----DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHT 698 (1158)
Q Consensus 631 Ei~k~~~~~~l~-v~v~~g~~~------~~~~~l~~-----~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ 698 (1158)
|+.+|.+. ++ +.+++|... ........ .+|++||||+.+.... .....+..+.|+++|+||||+
T Consensus 408 e~~k~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~--~~~~~l~~~~~~~~v~DEa~~ 483 (866)
T COG0553 408 EFEKFAPD--LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL--VDHGGLKKIEWDRVVLDEAHR 483 (866)
T ss_pred HHhhhCcc--ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh--hhHHHHhhceeeeeehhhHHH
Confidence 99999886 66 888888764 22333332 2899999999998421 156788999999999999999
Q ss_pred cCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhh-hcCCCcCCCchHHHhhhccCcchhhhH------
Q 001095 699 LGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLK-FLHEEAYGQNQKAWDGGILRPFEAEME------ 771 (1158)
Q Consensus 699 ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~-FL~p~~~~~~~~~f~~~~~~p~~~~~~------ 771 (1158)
|||.. +..++.+..+++.+||+|||||++|+ +.|||++++ |+.|..+++....|...|..|......
T Consensus 484 ikn~~--s~~~~~l~~~~~~~~~~LtgTPlen~----l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 557 (866)
T COG0553 484 IKNDQ--SSEGKALQFLKALNRLDLTGTPLENR----LGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEA 557 (866)
T ss_pred Hhhhh--hHHHHHHHHHhhcceeeCCCChHhhh----HHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhh
Confidence 99977 45566788999999999999999999 999999999 999999997678999999998866543
Q ss_pred --HHHHHHHHHHHhHHhhhcccc--cc-cCCCceEEEEEecCCHHHHHHHHHHHH---HHHHHhhhhccCCCchhhhhcC
Q 001095 772 --EGRSRLLQLLHRCMISARKTD--LQ-TIPLCIKEVTFLNFTEEHAGTYNELVV---TVRRNILMADWNDPSHVESLLN 843 (1158)
Q Consensus 772 --~~~~~L~~lL~~~mlRR~K~d--v~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~---~~~~~l~~~~~~~~~~~esll~ 843 (1158)
....+|+.++.++++||.|.+ +. +||++.+.++.+++++.|+.+|+.... .....+......+... +.
T Consensus 558 ~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~----~~ 633 (866)
T COG0553 558 RELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDE----NR 633 (866)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cc
Confidence 334457889999999999999 65 899999999999999999999999988 4333322211110000 00
Q ss_pred ch-hhhhHHHHHHHHHHHccccCCccccc-cchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccc
Q 001095 844 PK-QWKFRSTTIRNLRLSCCVAGHIKVTD-AGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMD 921 (1158)
Q Consensus 844 ~~-~~~~~~~~l~~LR~~c~h~~~~~~~~-~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~ 921 (1158)
.. .....+..+.+||++|+||..+.... ..... ..... +.+
T Consensus 634 ~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~--~~~~~------------------------------~~~----- 676 (866)
T COG0553 634 IGDSELNILALLTRLRQICNHPALVDEGLEATFDR--IVLLL------------------------------RED----- 676 (866)
T ss_pred ccchhhHHHHHHHHHHHhccCccccccccccccch--hhhhh------------------------------hcc-----
Confidence 00 23455678999999999998776431 10000 00000 000
Q ss_pred cCCCCCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccC-chHHHHHHhcCcccccccCCCC--eEEEEe
Q 001095 922 SEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSN-TNTFLKQDLYRPNLESNKALPD--KVIIFS 998 (1158)
Q Consensus 922 ~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s-~~~~L~~~L~~~~~~~~~~~~~--KVLVFS 998 (1158)
.........++ ..+ .+......++. ......++ |+|||+
T Consensus 677 ---------------------------~~~~~~~~~~~--------~~s~~k~~~l~~ll~---~~~~~~~~~~kvlifs 718 (866)
T COG0553 677 ---------------------------KDFDYLKKPLI--------QLSKGKLQALDELLL---DKLLEEGHYHKVLIFS 718 (866)
T ss_pred ---------------------------cccccccchhh--------hccchHHHHHHHHHH---HHHHhhcccccEEEEe
Confidence 00000000000 001 11111112220 11244566 999999
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHH
Q 001095 999 QFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEE 1077 (1158)
Q Consensus 999 qf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~ 1077 (1158)
||+.++++++..|...++.+++++|+++..+|+.++++|++++...|++.| ++||.||||+.|++||++||+|||+.+.
T Consensus 719 q~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~ 798 (866)
T COG0553 719 QFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVEL 798 (866)
T ss_pred CcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHH
Confidence 999999999999999999999999999999999999999998777777776 8999999999999999999999999999
Q ss_pred HHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhh
Q 001095 1078 QVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKEE 1124 (1158)
Q Consensus 1078 QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~ 1124 (1158)
||++|+||+||+++|.||+++++|||||+|++++..|..+...+.++
T Consensus 799 Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 799 QAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999888877776
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-50 Score=449.18 Aligned_cols=408 Identities=20% Similarity=0.262 Sum_probs=300.8
Q ss_pred ccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHH----hcCCEEEEECcccHHHHHHHHHhh
Q 001095 560 GFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLY----LSRATLIVVPSYLVDHWKTQIQQH 635 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall----~s~~tLIVvP~sLl~qW~~Ei~k~ 635 (1158)
..+-|||.+|+.+.++.|-. .++|| +||||||+|||++. ..+|.|||||+++...|.+++.+|
T Consensus 197 s~LlPFQreGv~faL~RgGR---------~llAD----eMGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~al~r~ 263 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGR---------ILLAD----EMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNRF 263 (689)
T ss_pred HhhCchhhhhHHHHHhcCCe---------EEEec----ccccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHh
Confidence 34779999999998877532 46666 69999999999874 358999999999999999999999
Q ss_pred cCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc
Q 001095 636 VRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL 715 (1158)
Q Consensus 636 ~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L 715 (1158)
+|.... +.+..++.... ..+-...-|+|+||+.++. ....|..-.|..||+||.|++|+..+++.++.+-..-
T Consensus 264 lps~~p-i~vv~~~~D~~-~~~~t~~~v~ivSye~ls~-----l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk 336 (689)
T KOG1000|consen 264 LPSIHP-IFVVDKSSDPL-PDVCTSNTVAIVSYEQLSL-----LHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLK 336 (689)
T ss_pred cccccc-eEEEecccCCc-cccccCCeEEEEEHHHHHH-----HHHHHhcccceEEEEechhhhhccchhhhhhhhhHHH
Confidence 986433 44443332211 1111245699999999984 3566777789999999999999966444444344455
Q ss_pred ccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcch------hhhHHHHHHHHHHH-HhHHhhh
Q 001095 716 TASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFE------AEMEEGRSRLLQLL-HRCMISA 788 (1158)
Q Consensus 716 ~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~------~~~~~~~~~L~~lL-~~~mlRR 788 (1158)
.+.+.++|||||...+ +.|||.++..+++..|.+ +..|...|+.--. ...-.+..+|..+| +..||||
T Consensus 337 ~akhvILLSGTPavSR----P~elytqi~avd~tlfp~-f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRR 411 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSR----PSELYTQIRAVDHTLFPN-FHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRR 411 (689)
T ss_pred HhhheEEecCCcccCC----chhhhhhhhhhccccccc-HHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999 999999999999999885 7777777665321 11223345566655 4579999
Q ss_pred cccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCc
Q 001095 789 RKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHI 867 (1158)
Q Consensus 789 ~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~ 867 (1158)
.|.|++ +||||...++.+ ....+-+.-..+...... ...+++.-. + ....+..-++.
T Consensus 412 lK~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~---------~t~~~~~e~--~---~~~l~l~y~~t------- 469 (689)
T KOG1000|consen 412 LKADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAAD---------YTKVNSMER--K---HESLLLFYSLT------- 469 (689)
T ss_pred HHHHHHhhCCccceEEEEE-cCCccchHHHHHHHHhhh---------cchhhhhhh--h---hHHHHHHHHHh-------
Confidence 999975 899995555544 344444443333322111 001100000 0 00000000000
Q ss_pred cccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCC
Q 001095 868 KVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPEN 947 (1158)
Q Consensus 868 ~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~ 947 (1158)
+..
T Consensus 470 -------------------gia---------------------------------------------------------- 472 (689)
T KOG1000|consen 470 -------------------GIA---------------------------------------------------------- 472 (689)
T ss_pred -------------------ccc----------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCChhhhhhccccccccCchHHHHHHhcC-cccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 001095 948 PNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYR-PNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMH 1026 (1158)
Q Consensus 948 ~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~-~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~ 1026 (1158)
+. ..+.+-+.. .. -...++.|+|||+++..+||-|+..+.+.++.+++|||+|+
T Consensus 473 ---K~--------------------~av~eyi~~~~~--l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~ 527 (689)
T KOG1000|consen 473 ---KA--------------------AAVCEYILENYF--LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTP 527 (689)
T ss_pred ---cc--------------------HHHHHHHHhCcc--cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCC
Confidence 00 000001110 00 03668899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHH
Q 001095 1027 SSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105 (1158)
Q Consensus 1027 ~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE 1105 (1158)
+.+|+.+++.||.++.++|-+++ .|+|+||+|++|+.|+|.+++|||....||.+|+||+||+..|.||+|+++||+||
T Consensus 528 s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Dd 607 (689)
T KOG1000|consen 528 SHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADD 607 (689)
T ss_pred chhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHH
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHH
Q 001095 1106 QMLEFLQDTDR 1116 (1158)
Q Consensus 1106 ~Il~~l~~K~~ 1116 (1158)
.++.++++|+.
T Consensus 608 y~Wp~l~~KL~ 618 (689)
T KOG1000|consen 608 YMWPMLQQKLD 618 (689)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 17
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-51 Score=498.33 Aligned_cols=263 Identities=25% Similarity=0.394 Sum_probs=203.4
Q ss_pred cEEeecccCCcccchHHHHHHHHh-----------------------cCCEEEEECcccHHHHHHHHHhhcCCCCeEEEE
Q 001095 589 NLAFDLAALRLALCEPLDSVRLYL-----------------------SRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFV 645 (1158)
Q Consensus 589 gILaDelad~mGLGKTlqaiall~-----------------------s~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v 645 (1158)
++++|+ ||+|||...+++.. +|+||||||.+++.||.+||.+|++.. ++|+.
T Consensus 377 ~~~ade----~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 377 VQCADE----MGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred eeehhh----hhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhcccc-ceEEE
Confidence 456664 77888877766542 389999999999999999999999875 89999
Q ss_pred ecCCCCc---ccccccCCCCEEEeechhhhhhhhc-----------------CCCCCcccccceEEEEccccccCCCchH
Q 001095 646 WTDHKKP---SAHSLAWDYDVVITTFNRLSAEWGR-----------------RKKSPMMQVHWLRVMLDEGHTLGSSLNL 705 (1158)
Q Consensus 646 ~~g~~~~---~~~~l~~~~DVVItTY~~L~~e~~~-----------------~~~~~L~~~~w~rVIlDEAH~ikn~~s~ 705 (1158)
|.|-++. ...++ .+||||+|||++|+.|+.. ...++|..+.||||||||||++.+++
T Consensus 452 Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss-- 528 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS-- 528 (1394)
T ss_pred EechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH--
Confidence 9986542 22344 4999999999999998742 34689999999999999999999844
Q ss_pred HHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHH
Q 001095 706 TNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCM 785 (1158)
Q Consensus 706 t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~m 785 (1158)
++.++|+..|.+.++|++||||+|+ +.||++||.||+..||+. ..+|-+.+..++... .....+..++...+
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~-----Iddl~~Ll~fLk~~Pf~~-~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l 600 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQK-----IDDLFPLLEFLKLPPFCR-PQDFIQTVDKAYQLR--AKCEPLLDLFKQLL 600 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhh-----hhhhHHHHHHhcCCCCCC-hHHHHHHHHHHHHHH--hhhhhHHHHHHhhh
Confidence 6778999999999999999999999 679999999999999996 788888887766554 44456778899999
Q ss_pred hhhcccccc---cCCCceEEEEEecCCHHHHHHHHHHH----HHHHHHhhhhcc--CCCchhhhhcCchhhhhHHHHHHH
Q 001095 786 ISARKTDLQ---TIPLCIKEVTFLNFTEEHAGTYNELV----VTVRRNILMADW--NDPSHVESLLNPKQWKFRSTTIRN 856 (1158)
Q Consensus 786 lRR~K~dv~---~LPpk~e~vv~v~lS~~q~~~Y~~l~----~~~~~~l~~~~~--~~~~~~esll~~~~~~~~~~~l~~ 856 (1158)
.|+-|.++. .+||..+.+.+..+++.|-.+|.... +.+...+..... -+.+.....+...........+.+
T Consensus 601 ~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~r 680 (1394)
T KOG0298|consen 601 WRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLR 680 (1394)
T ss_pred hhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHH
Confidence 999998763 69999999999988888777765443 333322221111 112222234444555667788999
Q ss_pred HHHHccccCCc
Q 001095 857 LRLSCCVAGHI 867 (1158)
Q Consensus 857 LR~~c~h~~~~ 867 (1158)
||++||||-..
T Consensus 681 LRq~Cchplv~ 691 (1394)
T KOG0298|consen 681 LRQACCHPLVG 691 (1394)
T ss_pred HHHhhcccccc
Confidence 99999998533
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.5e-49 Score=496.29 Aligned_cols=402 Identities=19% Similarity=0.263 Sum_probs=290.4
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-------cCCEEEEECcccHHHHHHHHHh
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-------SRATLIVVPSYLVDHWKTQIQQ 634 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-------s~~tLIVvP~sLl~qW~~Ei~k 634 (1158)
+.|||...+.+...... ...|||| +||||||++++.++. .+++|||||.+|+.||..|+.+
T Consensus 153 l~pHQl~~~~~vl~~~~--------~R~LLAD----EvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~ 220 (956)
T PRK04914 153 LIPHQLYIAHEVGRRHA--------PRVLLAD----EVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLR 220 (956)
T ss_pred CCHHHHHHHHHHhhccC--------CCEEEEe----CCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHH
Confidence 67999988654333222 2358888 599999999988763 2699999999999999999998
Q ss_pred hcCCCCeEEEEecCCCCcc----cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCch-HHHHH
Q 001095 635 HVRPGQLHLFVWTDHKKPS----AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLN-LTNKL 709 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~----~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s-~t~~~ 709 (1158)
+|+ +.+.++++..... .......++++|+||+++++.. .....+....|++||+||||++++..+ .+..+
T Consensus 221 kF~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~--~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 221 RFN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK--QRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HhC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH--HHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 886 5566666543111 1122236899999999998421 112345677999999999999996421 13345
Q ss_pred HHHHHc--ccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccC--cch-------hh---hHHH--
Q 001095 710 QMAISL--TASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILR--PFE-------AE---MEEG-- 773 (1158)
Q Consensus 710 ~~~~~L--~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~--p~~-------~~---~~~~-- 773 (1158)
+.+..+ +++++++|||||++|+ ..|+|++|+||+|+.|++ ...|.+.... |+. .+ ....
T Consensus 296 ~~v~~La~~~~~~LLLTATP~q~~----~~e~falL~lLdP~~f~~-~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~ 370 (956)
T PRK04914 296 QVVEQLAEVIPGVLLLTATPEQLG----QESHFARLRLLDPDRFHD-YEAFVEEQQQYRPVADAVQALLAGEKLSDDALN 370 (956)
T ss_pred HHHHHHhhccCCEEEEEcCcccCC----cHHHHHhhhhhCCCcCCC-HHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHH
Confidence 666555 6789999999999999 999999999999999996 7777643221 110 00 0000
Q ss_pred ----------------------------HHHHHH-HH-----HhHHhhhcccccccCCCceEEEEEecCCHHHHHHHHHH
Q 001095 774 ----------------------------RSRLLQ-LL-----HRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNEL 819 (1158)
Q Consensus 774 ----------------------------~~~L~~-lL-----~~~mlRR~K~dv~~LPpk~e~vv~v~lS~~q~~~Y~~l 819 (1158)
+.++.. ++ .++|+|++++++..+|++..+.+.+++.+..+..+...
T Consensus 371 ~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~ 450 (956)
T PRK04914 371 ALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVS 450 (956)
T ss_pred HHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHh
Confidence 111111 11 25789999999999999999999999977544433210
Q ss_pred HHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHH
Q 001095 820 VVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIK 899 (1158)
Q Consensus 820 ~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~ 899 (1158)
. . ..++.. .+| +.+ ...+...
T Consensus 451 ~---~------------------------------~~~~~~-l~p---------e~~---~~~~~~~------------- 471 (956)
T PRK04914 451 L---E------------------------------ARARDM-LYP---------EQI---YQEFEDN------------- 471 (956)
T ss_pred H---H------------------------------HHHHhh-cCH---------HHH---HHHHhhh-------------
Confidence 0 0 001100 000 000 0000000
Q ss_pred HhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCc--h-HHHH
Q 001095 900 YNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNT--N-TFLK 976 (1158)
Q Consensus 900 ~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~--~-~~L~ 976 (1158)
. .|... + ..|.
T Consensus 472 --------------------------------------------------~----------------~~~~~d~Ki~~L~ 485 (956)
T PRK04914 472 --------------------------------------------------A----------------TWWNFDPRVEWLI 485 (956)
T ss_pred --------------------------------------------------h----------------hccccCHHHHHHH
Confidence 0 00000 1 1122
Q ss_pred HHhcCcccccccCCCCeEEEEeccHHHHHHHHHHH-HHCCCeEEEEeCCCCHHHHHHHHHHhccCC-CeeEEEEeCcccc
Q 001095 977 QDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQL-TVAGIKFAGMYSPMHSSNKIKSLDMFRHDA-SCLALLMDGSASL 1054 (1158)
Q Consensus 977 ~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L-~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~-~~~VLL~s~agg~ 1054 (1158)
+.+. ...++|+|||+++..+++.|++.| ...|++++.|+|+++..+|.++++.|++++ ++.|||+|.+||+
T Consensus 486 ~~L~-------~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 486 DFLK-------SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHH-------hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 2221 234789999999999999999999 567999999999999999999999999864 7899999999999
Q ss_pred ccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHHH
Q 001095 1055 GLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDRC 1117 (1158)
Q Consensus 1055 GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~l 1117 (1158)
|+||++|+|||+||+||||...+|||||+||+||+++|.||+++.+||+|++|+++..+|.++
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~i 621 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNA 621 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCc
Confidence 999999999999999999999999999999999999999999999999999999999998743
No 19
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-49 Score=452.76 Aligned_cols=517 Identities=16% Similarity=0.233 Sum_probs=344.4
Q ss_pred cccchhhHHhhhHHHHh---hcccccccccCCCcEEeecccCCcccchHHHHHHHHh-------cCCEEEEECcccHHHH
Q 001095 559 QGFHKIFQAFGLIRRVE---KGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-------SRATLIVVPSYLVDHW 628 (1158)
Q Consensus 559 ~~~~~~~Q~~Gl~~~~e---~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-------s~~tLIVvP~sLl~qW 628 (1158)
..-++|||.-|+-+.+. +...++-...++|+|||. .||||||+|.|++.- ++.+|+|||-+.++||
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAH----SMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNW 327 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAH----SMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNW 327 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeee----ccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHH
Confidence 44578899888733222 223344445789999988 699999999998742 4899999999999999
Q ss_pred HHHHHhhcCC---------CCeEEEEecCCCCc------ccccccCCCCEEEeechhhhhhhhc-------------C--
Q 001095 629 KTQIQQHVRP---------GQLHLFVWTDHKKP------SAHSLAWDYDVVITTFNRLSAEWGR-------------R-- 678 (1158)
Q Consensus 629 ~~Ei~k~~~~---------~~l~v~v~~g~~~~------~~~~l~~~~DVVItTY~~L~~e~~~-------------~-- 678 (1158)
..|+.+|.|. ..+.|++..+..+. -..+......|.++.|++++--.-+ +
T Consensus 328 lsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~ 407 (1387)
T KOG1016|consen 328 LSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRIS 407 (1387)
T ss_pred HHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccC
Confidence 9999999985 14556665553321 1122234677999999988643210 0
Q ss_pred ------------------CCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhH
Q 001095 679 ------------------KKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQ 740 (1158)
Q Consensus 679 ------------------~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~ 740 (1158)
..+.|..-..|+||+||+|+|||.. +....++..++.++|++|||-|+||+ +-|+|
T Consensus 408 ~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~--A~iS~aLk~IrtrRRiVLTGYPLQNN----LlEYw 481 (1387)
T KOG1016|consen 408 SGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNIT--AEISMALKAIRTRRRIVLTGYPLQNN----LLEYW 481 (1387)
T ss_pred CcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccch--HHHHHHHHHhhhceeEEEeccccccc----hHHHh
Confidence 0133556678999999999999976 56677889999999999999999999 99999
Q ss_pred HHhhhcCCCcCCCchHHHhhhccCcchhhh------------HHHHHHHHHHHHhHHhhhcccccc-cCCCceEEEEEec
Q 001095 741 PMLKFLHEEAYGQNQKAWDGGILRPFEAEM------------EEGRSRLLQLLHRCMISARKTDLQ-TIPLCIKEVTFLN 807 (1158)
Q Consensus 741 sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~------------~~~~~~L~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~ 807 (1158)
.+++|++|..+|+ ...|.+.|.+|+.++. ......|+.+|..|+-||+-.-+. .||.+.++++.+.
T Consensus 482 CMVDFVRP~yLGT-R~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr 560 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGT-RKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVR 560 (1387)
T ss_pred hhheeccccccch-HHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEe
Confidence 9999999999997 8999999999998763 112345778899998888876664 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchhHHHHHHHHHHcC
Q 001095 808 FTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQETMDVLVENG 887 (1158)
Q Consensus 808 lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~~~l~~l~~~~ 887 (1158)
+|..||.+|..+.....+.+....+. .+++ +.++.---++-+||..+ .+.+.+..
T Consensus 561 ~s~iQR~LY~~Fm~d~~r~~~~~~~~-------~~NP------LkAF~vCcKIWNHPDVL------------Y~~l~k~~ 615 (1387)
T KOG1016|consen 561 KSQIQRQLYRNFMLDAKREIAANNDA-------VFNP------LKAFSVCCKIWNHPDVL------------YRLLEKKK 615 (1387)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc-------ccCh------HHHHHHHHHhcCChHHH------------HHHHHHhh
Confidence 99999999999886666554332222 1111 11122222333444311 11111100
Q ss_pred CCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccC---CCCCCCCCCCCChhhhhhccc
Q 001095 888 LDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILT---RPENPNPKWPVPQDLIELQPS 964 (1158)
Q Consensus 888 ~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~---~~~~~~~~~~~~~~lie~~~~ 964 (1158)
.... ....+.+....+.. ..|.......... ..++.....+... .+.+. -+.+...+.-+..-.
T Consensus 616 ~a~e--~dl~vee~~~ag~~----~~~~P~~~~~~~~------s~~laSs~~k~~n~t~kp~~s-~~~p~f~ee~~e~~~ 682 (1387)
T KOG1016|consen 616 RAEE--DDLRVEEMKFAGLQ----QQQSPFNSIPSNP------STPLASSTSKSANKTKKPRGS-KKAPKFDEEDEEVEK 682 (1387)
T ss_pred hhhh--hhhhHHHHhhhccc----ccCCCCCCCCCCC------CCcccchhhhhhcccCCcccC-cCCCCcccccccccc
Confidence 0000 00001111111100 0000000000000 0000000000000 00000 000000000000011
Q ss_pred ccccc--------C----chHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHC------------------
Q 001095 965 YRQWS--------N----TNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVA------------------ 1014 (1158)
Q Consensus 965 ~~~~~--------s----~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~------------------ 1014 (1158)
|..|. + .+.+++..+. + ......-++|+|||||-...|++|++.|.+.
T Consensus 683 y~~w~~el~~nYq~gvLen~pk~V~~~~-~-~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~ 760 (1387)
T KOG1016|consen 683 YSDWTFELFENYQEGVLENGPKIVISLE-I-LDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEK 760 (1387)
T ss_pred hhhHHHHHHhhhhcccccCCCceEEEEe-e-eccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhh
Confidence 11111 1 1122221111 1 1234567899999999999999999999864
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhccCCCee--EEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcE
Q 001095 1015 GIKFAGMYSPMHSSNKIKSLDMFRHDASCL--ALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPI 1092 (1158)
Q Consensus 1015 gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~--VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V 1092 (1158)
.+.|.+++|.++..+|+++|++||+.+++. +||++++|..|+||..||++|+||-.|||..+.||+.|++|+||+|++
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred ccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 245899999999999999999999998876 455569999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHhHHHHHHHHhhhc
Q 001095 1093 HVETLAMRGTVEEQMLEFLQDTDRCRRLLKEELV 1126 (1158)
Q Consensus 1093 ~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~~~~ 1126 (1158)
+||||++.+|+|.+||+++..|..+.+.|.++..
T Consensus 841 fvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~n 874 (1387)
T KOG1016|consen 841 FVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDAN 874 (1387)
T ss_pred eEEeehhhhhhHHHHHHHHHhhccchhhhhcccC
Confidence 9999999999999999999999877776666543
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.1e-37 Score=352.04 Aligned_cols=262 Identities=28% Similarity=0.478 Sum_probs=204.9
Q ss_pred cCCCcEEeecccCCcccchHHHHHHHHhc----------CCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCCC--Cc
Q 001095 585 KTLDNLAFDLAALRLALCEPLDSVRLYLS----------RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHK--KP 652 (1158)
Q Consensus 585 ~~~ggILaDelad~mGLGKTlqaiall~s----------~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~--~~ 652 (1158)
...||||||+ ||+|||+++++++.. +++|||||++++.||..|+.+|++++.++++++++.. ..
T Consensus 24 ~~~g~lL~de----~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~ 99 (299)
T PF00176_consen 24 PPRGGLLADE----MGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRR 99 (299)
T ss_dssp TT-EEEE-------TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHH
T ss_pred CCCCEEEEEC----CCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhcccccccccccccccccccccc
Confidence 3457999995 999999999998751 2599999999999999999999976668999999877 22
Q ss_pred ccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCc
Q 001095 653 SAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTP 732 (1158)
Q Consensus 653 ~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~ 732 (1158)
........++++|+||+++...........+..++|++||+||+|.+||..+ ..+.++..+.+.++|+|||||++|+
T Consensus 100 ~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s--~~~~~l~~l~~~~~~lLSgTP~~n~- 176 (299)
T PF00176_consen 100 LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS--KRYKALRKLRARYRWLLSGTPIQNS- 176 (299)
T ss_dssp TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS--HHHHHHHCCCECEEEEE-SS-SSSG-
T ss_pred ccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc--cccccccccccceEEeecccccccc-
Confidence 2333445899999999999833223445667778999999999999999874 5566788899999999999999999
Q ss_pred cchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhccccc-ccCCCceEEEEEecCCHH
Q 001095 733 NSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDL-QTIPLCIKEVTFLNFTEE 811 (1158)
Q Consensus 733 ~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~dv-~~LPpk~e~vv~v~lS~~ 811 (1158)
+.|||++++||+|+.+++ ...|.+.+..+..........+|..++..+++||+++|+ .+||++.+.++.++||++
T Consensus 177 ---~~dl~~~l~~L~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~ 252 (299)
T PF00176_consen 177 ---LEDLYSLLRFLNPDPFSD-RRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPE 252 (299)
T ss_dssp ---SHHHHHHHHHHCTTTCSS-HHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HH
T ss_pred ---ccccccchheeecccccc-chhhhhhhhhhccccccccccccccccchhhhhhhcccccccCCceEEEEEEeCCCHH
Confidence 999999999999999995 778998887765556677888999999999999999998 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCC
Q 001095 812 HAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGH 866 (1158)
Q Consensus 812 q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~ 866 (1158)
|+..|+++....+..+.... .............+.+||++|+||.+
T Consensus 253 q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 253 QRELYNELLKEARENLKQSS---------RKKSKKLSSLLQILKRLRQVCNHPYL 298 (299)
T ss_dssp HHHHHHHHHHHHGGCCTT-T-----------TCHHHHHHHHHHHHHHHHHH-THH
T ss_pred HHHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHhCCccc
Confidence 99999988876554322111 12345556677889999999999964
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.3e-33 Score=336.35 Aligned_cols=346 Identities=18% Similarity=0.189 Sum_probs=244.3
Q ss_pred cchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--cCCEEEEECcc-cHHHHHHHHHhhcC
Q 001095 561 FHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--SRATLIVVPSY-LVDHWKTQIQQHVR 637 (1158)
Q Consensus 561 ~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--s~~tLIVvP~s-Ll~qW~~Ei~k~~~ 637 (1158)
-+++||..++.+...++. ..+||+.. .+|.|||+++++++. .+++|||||.+ ++.||.+||.+|+.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr-------~r~GIIvL----PtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGR-------ARSGIIVL----PCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CcCHHHHHHHHHHHhcCC-------CCCcEEEe----CCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 389999999855443321 24688876 599999999998764 47999999976 58999999999975
Q ss_pred CCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhcC-----CCCCcccccceEEEEccccccCCCchHHHHHHHH
Q 001095 638 PGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRR-----KKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMA 712 (1158)
Q Consensus 638 ~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~-----~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~ 712 (1158)
-....+..|.+..+... ....+|+|+||+++.+...+. ....|....|++||+||+|++.+. ...+.+
T Consensus 324 l~~~~I~~~tg~~k~~~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il 396 (732)
T TIGR00603 324 IDDSQICRFTSDAKERF---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVL 396 (732)
T ss_pred CCCceEEEEecCccccc---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHH
Confidence 33356666766543322 225789999999997542211 112345568999999999999752 222355
Q ss_pred HHcccCeEEEEeCCCCCCCccchhhhhHHHhhh-cCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhccc
Q 001095 713 ISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKF-LHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT 791 (1158)
Q Consensus 713 ~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~F-L~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~ 791 (1158)
..+++.+||+|||||+.++ +.+..+.| ++|..|.-+ |.+.+ ..
T Consensus 397 ~~l~a~~RLGLTATP~ReD------~~~~~L~~LiGP~vye~~---~~eLi-------------------~~-------- 440 (732)
T TIGR00603 397 TIVQAHCKLGLTATLVRED------DKITDLNFLIGPKLYEAN---WMELQ-------------------KK-------- 440 (732)
T ss_pred HhcCcCcEEEEeecCcccC------CchhhhhhhcCCeeeecC---HHHHH-------------------hC--------
Confidence 6778999999999999988 33443444 456555421 22211 11
Q ss_pred ccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccc
Q 001095 792 DLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTD 871 (1158)
Q Consensus 792 dv~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~ 871 (1158)
.-|.+.....++|+|++++...|....... +.+.....|.
T Consensus 441 --G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~--------------------------------k~~l~~~np~------ 480 (732)
T TIGR00603 441 --GFIANVQCAEVWCPMTPEFYREYLRENSRK--------------------------------RMLLYVMNPN------ 480 (732)
T ss_pred --CccccceEEEEEecCCHHHHHHHHHhcchh--------------------------------hhHHhhhChH------
Confidence 125566677899999998765553211000 0000000000
Q ss_pred cchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCC
Q 001095 872 AGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPK 951 (1158)
Q Consensus 872 ~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~ 951 (1158)
T Consensus 481 -------------------------------------------------------------------------------- 480 (732)
T TIGR00603 481 -------------------------------------------------------------------------------- 480 (732)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHH
Q 001095 952 WPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKI 1031 (1158)
Q Consensus 952 ~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~ 1031 (1158)
+-.....|+.. ....++|+|||+++...++.+.+.| +. ..|+|.|+..+|.
T Consensus 481 --------------------K~~~~~~Li~~----he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 481 --------------------KFRACQFLIRF----HEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred --------------------HHHHHHHHHHH----HhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 00000001100 1237899999999999988888777 43 4589999999999
Q ss_pred HHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC-CcChHHHHHhcccccCCCCc-----EEEEEEEeCCCHHH
Q 001095 1032 KSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW-DRSMEEQVISRAHRMGATRP-----IHVETLAMRGTVEE 1105 (1158)
Q Consensus 1032 ~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W-NP~~e~QAigRahRiGQ~k~-----V~V~rLi~~~TIEE 1105 (1158)
+++++|++++.+.+|++|++|++|+||..|++||++++++ |+..+.|++||+.|.+..+. .++|.|+++||.|+
T Consensus 532 ~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 532 QILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred HHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 9999999877889999999999999999999999999987 99999999999999997653 79999999999998
Q ss_pred HHHH
Q 001095 1106 QMLE 1109 (1158)
Q Consensus 1106 ~Il~ 1109 (1158)
..-.
T Consensus 612 ~~s~ 615 (732)
T TIGR00603 612 YYST 615 (732)
T ss_pred HHHH
Confidence 8744
No 22
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1e-34 Score=347.15 Aligned_cols=368 Identities=20% Similarity=0.306 Sum_probs=282.0
Q ss_pred cccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHhc--------CCEEEEECcccHHHHHH
Q 001095 559 QGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS--------RATLIVVPSYLVDHWKT 630 (1158)
Q Consensus 559 ~~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s--------~~tLIVvP~sLl~qW~~ 630 (1158)
.+++.+||.+|+.+ .+..+.++..+||||| ||||||++++.++.+ +|.|+++|-+.+-+|..
T Consensus 293 ~g~L~~~qleGln~------L~~~ws~~~~~ilADE----mgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 293 GGTLHPYQLEGLNW------LRISWSPGVDAILADE----MGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred Cccccccchhhhhh------hhcccccCCCcccchh----hcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 36788999999955 3344567888999996 999999999988642 69999999999999999
Q ss_pred HHHhhcCCCCeEEEEecCCCCcc---------cc---------------cccCCCCEEEeechhhhhhhhcCCCCCcccc
Q 001095 631 QIQQHVRPGQLHLFVWTDHKKPS---------AH---------------SLAWDYDVVITTFNRLSAEWGRRKKSPMMQV 686 (1158)
Q Consensus 631 Ei~k~~~~~~l~v~v~~g~~~~~---------~~---------------~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~ 686 (1158)
|+..|++. +.+..|.|..+.. .. .....+.+.+++|++.. .+.+.+.++
T Consensus 363 e~~~wap~--~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~-----~~~~il~~v 435 (696)
T KOG0383|consen 363 EFELWAPS--FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIE-----IDQSILFSV 435 (696)
T ss_pred chhccCCC--cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcc-----cCHHHHhhh
Confidence 99999986 5565666543210 00 11235788999999987 667899999
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcc
Q 001095 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF 766 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~ 766 (1158)
.|..+|+||+|+++|.. ++....+..-...++++|||||.+|+ +.+|+++|+||.++.|.+ ...|.+.|..-+
T Consensus 436 ~w~~livde~~rlkn~~--s~~f~~l~~~~~~~~~lltgtPlqnn----~~el~~ll~flt~~~~~~-~~~f~e~~~d~~ 508 (696)
T KOG0383|consen 436 QWGLLIVDEAHRLKNKQ--SKRFRVLTAYPIDSKLLLTGTPLQNN----LEELFNLLNFLTPGRFNS-LEWFLEEFHDIS 508 (696)
T ss_pred hcceeEeechhhcccch--hhhhhhccccccchhhhccCCcchhh----hHHhhhcccccCcccccc-hhhhhhhcchhh
Confidence 99999999999999965 55566666778899999999999999 999999999999999995 777877765433
Q ss_pred hhhhHHHHHHHHHHHHhHHhhhcccccc-cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCch
Q 001095 767 EAEMEEGRSRLLQLLHRCMISARKTDLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPK 845 (1158)
Q Consensus 767 ~~~~~~~~~~L~~lL~~~mlRR~K~dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~ 845 (1158)
..+..+.++.++.+.|+||.|.|+. .+|+|++.++.+.|++-|+++|..+...-- +.+++..
T Consensus 509 ---~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~--------------~~l~~~~ 571 (696)
T KOG0383|consen 509 ---CEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNW--------------QGLLAGV 571 (696)
T ss_pred ---HHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCCh--------------HHHhhcc
Confidence 3567788999999999999999986 689999999999999999999988765311 1222222
Q ss_pred hhhhHHHHHHHHHHHccccCCccccccc-hhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCC
Q 001095 846 QWKFRSTTIRNLRLSCCVAGHIKVTDAG-EDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEK 924 (1158)
Q Consensus 846 ~~~~~~~~l~~LR~~c~h~~~~~~~~~~-~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~ 924 (1158)
..-....+++.||+.|+||......... .........+.+
T Consensus 572 ~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k--------------------------------------- 612 (696)
T KOG0383|consen 572 HQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIK--------------------------------------- 612 (696)
T ss_pred hhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHH---------------------------------------
Confidence 2334456799999999999876541110 001001110000
Q ss_pred CCCCCCCcccccCCccccCCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHH
Q 001095 925 CSLPGCGFLYEMQSPEILTRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHI 1004 (1158)
Q Consensus 925 ~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~l 1004 (1158)
.+.+..++..++. +....++||+||+||+.++
T Consensus 613 --------------------------------------------~~~k~~~l~~~~~----~l~~~ghrvl~~~q~~~~l 644 (696)
T KOG0383|consen 613 --------------------------------------------ASGKLTLLLKMLK----KLKSSGHRVLIFSQMIHML 644 (696)
T ss_pred --------------------------------------------HHHHHHHHHHHHH----HHHhcchhhHHHHHHHHHH
Confidence 0111112222222 2377999999999999999
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCC--CeeEEEEeCccccc
Q 001095 1005 HVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDA--SCLALLMDGSASLG 1055 (1158)
Q Consensus 1005 d~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~--~~~VLL~s~agg~G 1055 (1158)
|++++++...| .|.++||..+...|+++|++||..+ .+.+||+|+|||.|
T Consensus 645 dlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 645 DLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999 9999999999999999999999644 36667777999987
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=2.5e-27 Score=303.51 Aligned_cols=451 Identities=17% Similarity=0.154 Sum_probs=258.6
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh------cCCEEEEECc-ccHHHHHHHHHh
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL------SRATLIVVPS-YLVDHWKTQIQQ 634 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~------s~~tLIVvP~-sLl~qW~~Ei~k 634 (1158)
.++||..-+...+++ ++|+++ .+|+|||++++.++. .+++|||||. .|+.||.+++.+
T Consensus 16 ~r~yQ~~~~~~~l~~-----------n~lv~~----ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 16 ARLYQQLLAATALKK-----------NTLVVL----PTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred ccHHHHHHHHHHhcC-----------CeEEEc----CCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 578998766444322 466666 699999998776653 3789999997 799999999999
Q ss_pred hcCCCCeEEEEecCCCCccc-ccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH
Q 001095 635 HVRPGQLHLFVWTDHKKPSA-HSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI 713 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~~-~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~ 713 (1158)
+++....++..++|...... .....+++|+++|++++.+... ...+..-.|+.||+||||++.+..+.........
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~---~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLI---AGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHH---cCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 98643346777777544322 2233478999999999986542 2334455789999999999987543332222111
Q ss_pred -HcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCC---CchHHHhhhccCc----chhhhHHHHHHHHHHHHhHH
Q 001095 714 -SLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYG---QNQKAWDGGILRP----FEAEMEEGRSRLLQLLHRCM 785 (1158)
Q Consensus 714 -~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~---~~~~~f~~~~~~p----~~~~~~~~~~~L~~lL~~~m 785 (1158)
..+..++++|||||..+. ..+..++.-|...... .........+..+ +..........++..|..++
T Consensus 158 ~~~~~~~il~lTaTP~~~~-----~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~ 232 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDE-----EKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEAL 232 (773)
T ss_pred hcCCCCEEEEEEcCCCCCH-----HHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHH
Confidence 223456899999998763 5666666665433221 1111111111111 11112334455666666666
Q ss_pred hhhcccc--cccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccc
Q 001095 786 ISARKTD--LQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCV 863 (1158)
Q Consensus 786 lRR~K~d--v~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h 863 (1158)
-++.+.- ...+++....+...++...++.++..+.. .+ + .. .........+..++++...
T Consensus 233 ~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~---------~~----~-~~----~~~~~~~~~~~~l~~~~~~ 294 (773)
T PRK13766 233 KDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIAN---------DD----S-EG----YEAISILAEAMKLRHAVEL 294 (773)
T ss_pred HHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhc---------Cc----h-HH----HHHHHHHHHHHHHHHHHHH
Confidence 5544322 12222222111111222222221111110 00 0 00 0000111112222221100
Q ss_pred cCCccccccchhHHHHHHHHHHcCCCc-chHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCcccc
Q 001095 864 AGHIKVTDAGEDIQETMDVLVENGLDP-LSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEIL 942 (1158)
Q Consensus 864 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l 942 (1158)
........+...++.+....... .+.....+.... .. .+.++ .+
T Consensus 295 ----l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~----~~-~~~~~--------------------------~~ 339 (773)
T PRK13766 295 ----LETQGVEALRRYLERLREEARSSGGSKASKRLVEDP----RF-RKAVR--------------------------KA 339 (773)
T ss_pred ----HHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCH----HH-HHHHH--------------------------HH
Confidence 00011111112222222111000 000000000000 00 00000 00
Q ss_pred CCCCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEe
Q 001095 943 TRPENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMY 1022 (1158)
Q Consensus 943 ~~~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ld 1022 (1158)
.......+++ ..|.+.|.... ...++.|+|||+++.++.+.|.+.|...|+++..++
T Consensus 340 ~~~~~~~pK~--------------------~~L~~il~~~~---~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 340 KELDIEHPKL--------------------EKLREIVKEQL---GKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred HhcccCChHH--------------------HHHHHHHHHHH---hcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 0000001111 12222222221 135789999999999999999999999999999999
Q ss_pred CC--------CCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEE
Q 001095 1023 SP--------MHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1023 G~--------t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
|. ++..+|.+++++|+++ .+.+|++|.++++|+|++.+++||+|||+||+....|++||++|.|+ +.|
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g-~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v 472 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAG-EFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRV 472 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEE
Confidence 97 8888999999999987 57899999999999999999999999999999999998888888775 678
Q ss_pred EEEEeCCCHHHHHHHHHHHhH
Q 001095 1095 ETLAMRGTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1095 ~rLi~~~TIEE~Il~~l~~K~ 1115 (1158)
|.|++++|+||.+|....+|.
T Consensus 473 ~~l~~~~t~ee~~y~~~~~ke 493 (773)
T PRK13766 473 VVLIAKGTRDEAYYWSSRRKE 493 (773)
T ss_pred EEEEeCCChHHHHHHHhhHHH
Confidence 999999999999987766554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.4e-20 Score=213.79 Aligned_cols=434 Identities=16% Similarity=0.146 Sum_probs=250.1
Q ss_pred cCCcccchHHHHHHHHhc------CCEEEEEC-cccHHHHHHHHHhhcCCCCeEEEEecCCCCcccc-cccCCCCEEEee
Q 001095 596 ALRLALCEPLDSVRLYLS------RATLIVVP-SYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAH-SLAWDYDVVITT 667 (1158)
Q Consensus 596 ad~mGLGKTlqaiall~s------~~tLIVvP-~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~-~l~~~~DVVItT 667 (1158)
++..|||||+.|+-++.. +..|+++| +.|+.|-..-+.+.++-..-.+..+.|.-++..+ ....+..|++.|
T Consensus 35 vlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaT 114 (542)
T COG1111 35 VLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVAT 114 (542)
T ss_pred EecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCCEEEec
Confidence 457999999988777652 57999999 5799999999999997656778888887665533 334478999999
Q ss_pred chhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcc-cCeEEEEeCCCCCCCccchhhhhHHHhhhc
Q 001095 668 FNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT-ASNRWLLTGTPTPNTPNSQLSHLQPMLKFL 746 (1158)
Q Consensus 668 Y~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~-a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL 746 (1158)
-+++.+++. ...+..-.+.++|+||||+.-..-+.+..++....-. ..+.+.|||||=.. .+.+...++-|
T Consensus 115 PQvveNDl~---~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~-----~ekI~eV~~nL 186 (542)
T COG1111 115 PQVVENDLK---AGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSD-----LEKIQEVVENL 186 (542)
T ss_pred cHHHHhHHh---cCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCC-----HHHHHHHHHhC
Confidence 999998743 4556666889999999999866545555444333333 34688899999765 45666666666
Q ss_pred CCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhccc--ccc-cCCCceEEEEEecCCHHHHHHHHHHHHHH
Q 001095 747 HEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKT--DLQ-TIPLCIKEVTFLNFTEEHAGTYNELVVTV 823 (1158)
Q Consensus 747 ~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~--dv~-~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~ 823 (1158)
+.+..- + ||-. |+. -+-.+....+.|+++++=.++-+.+..-+
T Consensus 187 gIe~ve---------------------------------v-rTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l 232 (542)
T COG1111 187 GIEKVE---------------------------------V-RTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDAL 232 (542)
T ss_pred CcceEE---------------------------------E-ecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHH
Confidence 543221 0 1111 110 12234455666666665544444433333
Q ss_pred HHHhhhhccCCCchhhhhcCchhhhhHHHHH-HHHHHHccccCC----ccccccchhHHHHHHHHHHcCCCcchHHHHHH
Q 001095 824 RRNILMADWNDPSHVESLLNPKQWKFRSTTI-RNLRLSCCVAGH----IKVTDAGEDIQETMDVLVENGLDPLSQEYAFI 898 (1158)
Q Consensus 824 ~~~l~~~~~~~~~~~esll~~~~~~~~~~~l-~~LR~~c~h~~~----~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l 898 (1158)
+..+....-.+-....+-.. .+..+.+. .++-.+...... +........+....+.+...|..+.-.-...+
T Consensus 233 ~~~Lk~L~~~g~~~~~~~~~---~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l 309 (542)
T COG1111 233 KPRLKPLKELGVIESSSPVS---KKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKL 309 (542)
T ss_pred HHHHHHHHHcCceeccCccc---HhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 32221111000000000000 01111111 111111000000 00000000111111122222222111000001
Q ss_pred HHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCCCCCC-hhhhhhccccccccCch-HHHH
Q 001095 899 KYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVP-QDLIELQPSYRQWSNTN-TFLK 976 (1158)
Q Consensus 899 ~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~-~~lie~~~~~~~~~s~~-~~L~ 976 (1158)
......++ .+....+.. .+..... ..++.... ......+ .++.
T Consensus 310 ~e~~~~~~-----------------------sk~a~~l~~----------d~~~~~al~~~~~~~~--~~v~HPKl~~l~ 354 (542)
T COG1111 310 EEEATKGG-----------------------SKAAKSLLA----------DPYFKRALRLLIRADE--SGVEHPKLEKLR 354 (542)
T ss_pred HHHhcccc-----------------------hHHHHHHhc----------ChhhHHHHHHHHHhcc--ccCCCccHHHHH
Confidence 00000000 000000000 0000000 00000000 0011112 2223
Q ss_pred HHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEE-EEeC--------CCCHHHHHHHHHHhccCCCeeEEE
Q 001095 977 QDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFA-GMYS--------PMHSSNKIKSLDMFRHDASCLALL 1047 (1158)
Q Consensus 977 ~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~-~ldG--------~t~~~~R~~~i~~F~~~~~~~VLL 1047 (1158)
+.+.+.. ...++.|||||++|.++.+.|..+|.+.|+... +|-| +|+.++..++|++|+++ .+.||+
T Consensus 355 eilke~~---~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLV 430 (542)
T COG1111 355 EILKEQL---EKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLV 430 (542)
T ss_pred HHHHHHH---hcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC-CceEEE
Confidence 2332222 356779999999999999999999999998875 7776 47888999999999987 589999
Q ss_pred EeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHH
Q 001095 1048 MDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116 (1158)
Q Consensus 1048 ~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~ 1116 (1158)
+|..|-+||++...+-||||||.=+|-...||.||.+|- +.=.||-|+++||-||.=|....+|..
T Consensus 431 aTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~ 496 (542)
T COG1111 431 ATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQ 496 (542)
T ss_pred EcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998884 666888899999999998888877763
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=4.9e-21 Score=228.30 Aligned_cols=365 Identities=16% Similarity=0.165 Sum_probs=249.1
Q ss_pred cccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--cCCEEEEECcc-cHHHHHHHHHhh
Q 001095 559 QGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--SRATLIVVPSY-LVDHWKTQIQQH 635 (1158)
Q Consensus 559 ~~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--s~~tLIVvP~s-Ll~qW~~Ei~k~ 635 (1158)
...+++||.+.+-...... .....|++-- ..|-|||+.++.++. ...+|||||.. |+.||.+.+.++
T Consensus 34 ~~~lr~yQ~~al~a~~~~~------~~~~~gvivl----pTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 34 EFELRPYQEEALDALVKNR------RTERRGVIVL----PTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCCcHHHHHHHHHHHhhc------ccCCceEEEe----CCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHh
Confidence 4458999999884433211 1133455543 599999999998875 46799999965 889999999998
Q ss_pred cCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc
Q 001095 636 VRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL 715 (1158)
Q Consensus 636 ~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L 715 (1158)
+... -.+-.+.+..+... ..+|++.||+++.+.- ....+..-+|+.||+||+|++.+.. . ...+..+
T Consensus 104 ~~~~-~~~g~~~~~~~~~~-----~~~i~vat~qtl~~~~---~l~~~~~~~~~liI~DE~Hh~~a~~--~--~~~~~~~ 170 (442)
T COG1061 104 LLLN-DEIGIYGGGEKELE-----PAKVTVATVQTLARRQ---LLDEFLGNEFGLIIFDEVHHLPAPS--Y--RRILELL 170 (442)
T ss_pred cCCc-cccceecCceeccC-----CCcEEEEEhHHHhhhh---hhhhhcccccCEEEEEccccCCcHH--H--HHHHHhh
Confidence 8642 12333444332211 1479999999998541 2234444489999999999999743 1 1234455
Q ss_pred ccCe-EEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhhhcccccc
Q 001095 716 TASN-RWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMISARKTDLQ 794 (1158)
Q Consensus 716 ~a~~-RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlRR~K~dv~ 794 (1158)
.+.+ ++.|||||...+ -..+.-+..++.+-.|..... .++.. .
T Consensus 171 ~~~~~~LGLTATp~R~D----~~~~~~l~~~~g~~vy~~~~~----------------------~li~~----------g 214 (442)
T COG1061 171 SAAYPRLGLTATPERED----GGRIGDLFDLIGPIVYEVSLK----------------------ELIDE----------G 214 (442)
T ss_pred hcccceeeeccCceeec----CCchhHHHHhcCCeEeecCHH----------------------HHHhC----------C
Confidence 6666 999999999666 445555555555555443111 11111 2
Q ss_pred cCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccch
Q 001095 795 TIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGE 874 (1158)
Q Consensus 795 ~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~ 874 (1158)
.|.|.....+.+.++..+...|..........+.. ... .......+.+..+
T Consensus 215 ~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~~~~~~~----------- 265 (442)
T COG1061 215 YLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA---------------RGT---LRAENEARRIAIA----------- 265 (442)
T ss_pred CccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh---------------hhh---hhHHHHHHHHhhc-----------
Confidence 37788889999999999999998766543321100 000 0000000000000
Q ss_pred hHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCCCCC
Q 001095 875 DIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPV 954 (1158)
Q Consensus 875 ~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~ 954 (1158)
+
T Consensus 266 -------------------------------------------------------~------------------------ 266 (442)
T COG1061 266 -------------------------------------------------------S------------------------ 266 (442)
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred ChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHH
Q 001095 955 PQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL 1034 (1158)
Q Consensus 955 ~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i 1034 (1158)
..+......+... .. .+.+++||+......+.+...+...|+ +..++|.++..+|.+++
T Consensus 267 ---------------~~~~~~~~~~~~~----~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il 325 (442)
T COG1061 267 ---------------ERKIAAVRGLLLK----HA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAIL 325 (442)
T ss_pred ---------------HHHHHHHHHHHHH----hc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHH
Confidence 0000000011100 11 678999999999999999999999888 89999999999999999
Q ss_pred HHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccc-cCCCCc--EEEEEEEeCCCHHHHHHHHH
Q 001095 1035 DMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR-MGATRP--IHVETLAMRGTVEEQMLEFL 1111 (1158)
Q Consensus 1035 ~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahR-iGQ~k~--V~V~rLi~~~TIEE~Il~~l 1111 (1158)
++|..++ +.+|+.++.+.+|+|+..|+.+|++.|.=++....|++||+.| ...+.. +..|-++..++.+..+....
T Consensus 326 ~~fr~g~-~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 326 ERFRTGG-IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRR 404 (442)
T ss_pred HHHHcCC-CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhh
Confidence 9999876 8999999999999999999999999999999999999999999 444443 88888888999998887654
Q ss_pred H
Q 001095 1112 Q 1112 (1158)
Q Consensus 1112 ~ 1112 (1158)
.
T Consensus 405 ~ 405 (442)
T COG1061 405 R 405 (442)
T ss_pred h
Confidence 4
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.87 E-value=5.8e-20 Score=223.23 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=102.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEEEEC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI~~D 1068 (1158)
.+.+++||+..+++.+.|.+.|...|+++..++|+++.++|.++++.|+++ ...|||+| +..++|+|+...++||+++
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccccccEEEEec
Confidence 567899999999999999999999999999999999999999999999865 45788888 8999999999999999999
Q ss_pred CCCCcChHHHHHhcccccCCCC-cEEEEEEEeCCCH
Q 001095 1069 PIWDRSMEEQVISRAHRMGATR-PIHVETLAMRGTV 1103 (1158)
Q Consensus 1069 p~WNP~~e~QAigRahRiGQ~k-~V~V~rLi~~~TI 1103 (1158)
|.-+.....|++||++|.|..| .+.||.++-.-.+
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 9999999999999999999877 6899988865443
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2.4e-20 Score=208.58 Aligned_cols=344 Identities=20% Similarity=0.271 Sum_probs=238.8
Q ss_pred CcccchhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--cCCEEEEECccc-HHHHHHHHHh
Q 001095 558 TQGFHKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--SRATLIVVPSYL-VDHWKTQIQQ 634 (1158)
Q Consensus 558 ~~~~~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--s~~tLIVvP~sL-l~qW~~Ei~k 634 (1158)
|...++|||+..|-+.+-+|..| .||+-- ..|.|||+..+.... .+.+||+|-+++ +.||+.++..
T Consensus 299 Pst~iRpYQEksL~KMFGNgRAR-------SGiIVL----PCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~ 367 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRAR-------SGIIVL----PCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQ 367 (776)
T ss_pred cccccCchHHHHHHHHhCCCccc-------CceEEE----ecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHh
Confidence 45568999999998777666655 477664 599999987766543 489999999886 8999999999
Q ss_pred hcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhc-----CCCCCcccccceEEEEccccccCCCchHHHHH
Q 001095 635 HVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGR-----RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKL 709 (1158)
Q Consensus 635 ~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~-----~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~ 709 (1158)
|..-..-.++.|....+..... ..+||||||+++..-..+ +....|....|.++||||.|.+-. .-+
T Consensus 368 wsti~d~~i~rFTsd~Ke~~~~---~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-----~MF 439 (776)
T KOG1123|consen 368 WSTIQDDQICRFTSDAKERFPS---GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-----KMF 439 (776)
T ss_pred hcccCccceEEeeccccccCCC---CCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-----HHH
Confidence 9875556777777666554433 678999999999754221 123457788999999999999863 223
Q ss_pred H-HHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhc-CCCcCCCchHHHhhhccCcchhhhHHHHHHHHHHHHhHHhh
Q 001095 710 Q-MAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFL-HEEAYGQNQKAWDGGILRPFEAEMEEGRSRLLQLLHRCMIS 787 (1158)
Q Consensus 710 ~-~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL-~p~~~~~~~~~f~~~~~~p~~~~~~~~~~~L~~lL~~~mlR 787 (1158)
+ .+...++..++.||+|-+..+ |=..=|+|| .|..|.-+ |.+.-.
T Consensus 440 RRVlsiv~aHcKLGLTATLvRED------dKI~DLNFLIGPKlYEAn---WmdL~~------------------------ 486 (776)
T KOG1123|consen 440 RRVLSIVQAHCKLGLTATLVRED------DKITDLNFLIGPKLYEAN---WMDLQK------------------------ 486 (776)
T ss_pred HHHHHHHHHHhhccceeEEeecc------ccccccceeecchhhhcc---HHHHHh------------------------
Confidence 3 344567888999999999987 222334454 56666533 322110
Q ss_pred hcccccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHHHHHHccccCCc
Q 001095 788 ARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHI 867 (1158)
Q Consensus 788 R~K~dv~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~ 867 (1158)
+. .+....-..|||+||++-...|-. +..++.++. +.+|+....
T Consensus 487 --kG---hIA~VqCaEVWCpMt~eFy~eYL~--~~t~kr~lL----------yvMNP~KFr------------------- 530 (776)
T KOG1123|consen 487 --KG---HIAKVQCAEVWCPMTPEFYREYLR--ENTRKRMLL----------YVMNPNKFR------------------- 530 (776)
T ss_pred --CC---ceeEEeeeeeecCCCHHHHHHHHh--hhhhhhhee----------eecCcchhH-------------------
Confidence 11 133344567999999965555532 222222111 111111000
Q ss_pred cccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCC
Q 001095 868 KVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPEN 947 (1158)
Q Consensus 868 ~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~ 947 (1158)
.|..
T Consensus 531 -------------------------------------------------------------aCqf--------------- 534 (776)
T KOG1123|consen 531 -------------------------------------------------------------ACQF--------------- 534 (776)
T ss_pred -------------------------------------------------------------HHHH---------------
Confidence 0100
Q ss_pred CCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCH
Q 001095 948 PNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHS 1027 (1158)
Q Consensus 948 ~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~ 1027 (1158)
+| .. -...|+|+||||.-.-.|.... -+.|-+ .|+|.|+.
T Consensus 535 ----------LI------------------~~-------HE~RgDKiIVFsDnvfALk~YA---ikl~Kp--fIYG~Tsq 574 (776)
T KOG1123|consen 535 ----------LI------------------KF-------HERRGDKIIVFSDNVFALKEYA---IKLGKP--FIYGPTSQ 574 (776)
T ss_pred ----------HH------------------HH-------HHhcCCeEEEEeccHHHHHHHH---HHcCCc--eEECCCch
Confidence 00 01 1347899999998776544433 334444 47999999
Q ss_pred HHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCC-cChHHHHHhcccccCCC----CcEEEEEEEeCCC
Q 001095 1028 SNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWD-RSMEEQVISRAHRMGAT----RPIHVETLAMRGT 1102 (1158)
Q Consensus 1028 ~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WN-P~~e~QAigRahRiGQ~----k~V~V~rLi~~~T 1102 (1158)
.+|.++++.|+.++.+.-+.+|++|...++|..||.+|-++.+.- ...|.|+.|||-|--.. -+++.|.|+++||
T Consensus 575 ~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 575 NERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred hHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 999999999999999888889999999999999999999988875 44799999999985422 2589999999999
Q ss_pred HHH
Q 001095 1103 VEE 1105 (1158)
Q Consensus 1103 IEE 1105 (1158)
.|-
T Consensus 655 qEM 657 (776)
T KOG1123|consen 655 QEM 657 (776)
T ss_pred HHH
Confidence 773
No 28
>PTZ00110 helicase; Provisional
Probab=99.77 E-value=8.6e-17 Score=197.08 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=100.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.|+|||++.....+.|...|...|++...++|.++.++|..+++.|+++ .+.|||+|.+++.|||+..+++||+||+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~ILVaTdv~~rGIDi~~v~~VI~~d~ 454 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSPIMIATDVASRGLDVKDVKYVINFDF 454 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCcEEEEcchhhcCCCcccCCEEEEeCC
Confidence 567999999999999999999999999999999999999999999999976 5689999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+.++....|++||+.|.|.+-. ++.|++.+
T Consensus 455 P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 455 PNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9999999999999999998654 45567665
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.77 E-value=6.3e-17 Score=195.03 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=104.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
...++|||+......+.|.+.|...|+....++|.++..+|..+++.|+++ .+.|||+|.+++.|||+...++||+||+
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~iLVaTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DIRVLVATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEccHHhcCCCcccCCEEEEeCC
Confidence 346899999999999999999999999999999999999999999999876 6799999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~ 1113 (1158)
+.++....|++||+.|.|++..+. .|++.+ |..+++.+++
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~ai--~l~~~~--d~~~~~~ie~ 362 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEAL--SLVCVD--EHKLLRDIEK 362 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeEE--EEecHH--HHHHHHHHHH
Confidence 999999999999999999876444 455544 4455544443
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.76 E-value=1.8e-16 Score=191.59 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=100.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||++.....+.+.+.|...|+....++|+++..+|..+++.|+++ ...|||+|.+++.|||+...++||++|+
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLVaTdv~~rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLVATDVAARGLDIKALEAVINYEL 319 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEEecccccccchhcCCeEEEecC
Confidence 346899999999999999999999999999999999999999999999965 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+.++....|++||+.|.|+.- ..|.|+..+
T Consensus 320 p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 320 ARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 999999999999999999764 455566665
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.76 E-value=7.9e-17 Score=193.40 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=97.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
...++|||+......+.+...|...|+....++|.++..+|..++++|+++ .+.||++|.+++.|+|+..+++||+||+
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLVaTd~~~~GiDip~v~~VI~~d~ 322 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLVATDVAARGIDIDDVSHVINFDM 322 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEEEccccccCccCCCCCEEEEECC
Confidence 457999999999999999999999999999999999999999999999865 6799999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEE
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
++++....|++||+.|.|....+.+
T Consensus 323 p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 323 PRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999998765444
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=3.6e-17 Score=197.75 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=98.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.++|||+......+.+.+.|...|+....++|+++.++|..+++.|.++ .+.||++|.+.|.|+|+...++||++++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCcEEEEechhhccCCcccceEEEEeCC
Confidence 456789999999999999999999999999999999999999999999965 6799999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEE
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
+.++....|++||++|.|+.....++
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 99999999999999999988765554
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.76 E-value=1.3e-16 Score=194.70 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=96.9
Q ss_pred CeEEEEeccHHHHHHHHHHHHH-CCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 992 DKVIIFSQFLEHIHVIEQQLTV-AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~-~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
.++|||.+.....+.+.+.|.. .|+++..++|+++.++|..+++.|.++ .+.||++|.+++.|||+..+++||+||++
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~ILVaTdvl~rGiDip~v~~VI~~d~P 446 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPVIVATGVLGRGVDLLRVRQVIIFDMP 446 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCEEEEecHhhccCCcccCCEEEEeCCC
Confidence 4799999999999999999975 699999999999999999999999976 57899999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
.++....|++||++|.|+.- .++.|+..+
T Consensus 447 ~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 447 NTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 99999999999999999754 444566654
No 34
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=2e-16 Score=194.61 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=99.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||++.....+.|.+.|...|+....++|.++..+|..+++.|+++ .+.|||+|.+++.|||+...++||+||+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~VLVaTdv~arGIDip~V~~VInyd~ 334 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLEILVATDVAARGLHIDGVKYVYNYDL 334 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEehhhhcCCCccCCCEEEEcCC
Confidence 467999999999999999999999999999999999999999999999875 5799999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
++++....|++||+.|.|..-.+ +.|++.
T Consensus 335 P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 335 PFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred CCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 99999999999999999986544 445654
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.75 E-value=1.7e-16 Score=189.81 Aligned_cols=109 Identities=24% Similarity=0.276 Sum_probs=100.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
...++|||++.....+.+.+.|...|++...++|.++.++|..+++.|+++ .+.||++|.+++.|||+...++||+||+
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~vLVaTdv~~rGiDip~v~~VI~~d~ 332 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILVATDVAARGLHIPAVTHVFNYDL 332 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCcEEEEechhhcCCCccccCEEEEeCC
Confidence 356899999999999999999999999999999999999999999999876 6799999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
++++....|++||+.|.|+.-. ++.|+.++
T Consensus 333 P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~~ 362 (423)
T PRK04837 333 PDDCEDYVHRIGRTGRAGASGH--SISLACEE 362 (423)
T ss_pred CCchhheEeccccccCCCCCee--EEEEeCHH
Confidence 9999999999999999997654 45566654
No 36
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.73 E-value=7.4e-16 Score=186.90 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=99.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
...|+|||++.....+.+.+.|...|+....++|.++..+|.++++.|+++ .+.||++|.+++.|||+...++||++++
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~vLvaT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRVLVATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcEEEEccccccCCcccCCCEEEEeCC
Confidence 446999999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
++++....|++||++|.|+.-. ++.|+..+
T Consensus 413 P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 413 PEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 9999999999999999997654 44455544
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.72 E-value=9.3e-16 Score=190.50 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=96.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||+......+.+...|...|+....++|+++.++|.++++.|.++ .+.||++|.+.|.|||+...++||+||+
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEEEEechhhccCCCCCcCEEEEeCC
Confidence 457899999999999999999999999999999999999999999999876 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEE
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
+.+.....|++||++|.|......+
T Consensus 314 P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 314 PRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred CCCHHHHHHHhhhccCCCCCceEEE
Confidence 9999999999999999997665333
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.70 E-value=6.3e-15 Score=182.48 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=96.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
...++|||+......+.|.+.|...|+....++|.++..+|..++++|+++ .+.|||+|.+++.|||+...++||+||+
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILVATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILIATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEEEcchHhcCCCcccCCEEEEeCC
Confidence 346899999999999999999999999999999999999999999999876 6789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEE
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
+.++....|++||+.|.|..-...+
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CCCHHHHHHHhccccCCCCcceEEE
Confidence 9999999999999999997654443
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.70 E-value=2e-15 Score=187.79 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=96.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
+.+.|||+......+.+.+.|...|+++..++|+++.++|..+++.|.++ .+.||++|.+.|.|+|+..+++||+++++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 57899999999999999999999999999999999999999999999876 47999999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEE
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
.|.....|++||++|.|+.....+
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEE
Confidence 999999999999999997665543
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.69 E-value=3.2e-15 Score=177.76 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=98.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
..++|||+......+.+.+.|...++....++|+++.++|..+++.|+++ .+.||++|.+.+.|+|+...++||++|++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEEEcccccCCcCcccCCEEEEECCC
Confidence 46899999999999999999999999999999999999999999999976 57999999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
.++....|++||++|.|..- .++.|+..+
T Consensus 346 ~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 346 ASPENYIHRIGRSGRFGRKG--VAINFVTPD 374 (401)
T ss_pred CCHHHEeecccccccCCCCc--eEEEEEcHH
Confidence 99999999999999999653 455567655
No 41
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.68 E-value=2.6e-14 Score=172.17 Aligned_cols=430 Identities=15% Similarity=0.115 Sum_probs=230.5
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-------cCCEEEEECcc-cHHHHHHHHH
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-------SRATLIVVPSY-LVDHWKTQIQ 633 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-------s~~tLIVvP~s-Ll~qW~~Ei~ 633 (1158)
+|.||.+=....+- .+-|+ ++.+|+|||..|.-++. .+.++..+|.. |+.|=..++.
T Consensus 63 lR~YQ~eivq~ALg-----------kNtii----~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 63 LRNYQEELVQPALG-----------KNTII----ALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred ccHHHHHHhHHhhc-----------CCeEE----EeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHh
Confidence 78999765544441 23444 44799999998877754 37899999975 7777668888
Q ss_pred hhcCCCCeEEEEecCCC--CcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHH
Q 001095 634 QHVRPGQLHLFVWTDHK--KPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQM 711 (1158)
Q Consensus 634 k~~~~~~l~v~v~~g~~--~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~ 711 (1158)
..+.+ ..+....+.. ......+....+|++.|-+++.+++....... --.|-++|+||||+-.....++...+.
T Consensus 128 ~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~kn~~Y~~Vmr~ 203 (746)
T KOG0354|consen 128 IYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSKNHPYNNIMRE 203 (746)
T ss_pred hccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccccccHHHHHHH
Confidence 88754 4444444432 22223444578999999999997755333222 245889999999998665566666555
Q ss_pred HHHcc--cCeEEEEeCCCCCCCccchhhhhHHHhhhcCCC----cCCC---chHHHhhhccCc--chhhhHHHHHHHHHH
Q 001095 712 AISLT--ASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEE----AYGQ---NQKAWDGGILRP--FEAEMEEGRSRLLQL 780 (1158)
Q Consensus 712 ~~~L~--a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~----~~~~---~~~~f~~~~~~p--~~~~~~~~~~~L~~l 780 (1158)
...++ ..+.++|||||- ++ .....+.+.=|... -..+ ++..-++....| +..........+..+
T Consensus 204 ~l~~k~~~~qILgLTASpG-~~----~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~ 278 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPG-SK----LEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMI 278 (746)
T ss_pred HHHhhhccccEEEEecCCC-cc----HHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHH
Confidence 54443 346788999999 55 55555555444332 1111 111111111111 222233445567777
Q ss_pred HHhHHhhhcccccccCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhcCchhhhhHHHHHHH--HH
Q 001095 781 LHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRN--LR 858 (1158)
Q Consensus 781 L~~~mlRR~K~dv~~LPpk~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~~~~~~~~esll~~~~~~~~~~~l~~--LR 858 (1158)
+.++|.+-...++..+-.... .........+.+.|.. +.... .+.+....+.+ +-
T Consensus 279 i~p~l~~l~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~q---------~~~f~~~~~~~~~~~ 335 (746)
T KOG0354|consen 279 IEPLLQQLQEEGLIEISDKST-SYEQWVVQAEKAAAPN-------------GPENQ---------RNCFYALHLRKYNLA 335 (746)
T ss_pred HHHHHHHHHhcCccccccccc-cccchhhhhhhhhccC-------------CCccc---------hhhHHHHHHHHHHHH
Confidence 888776555444432222211 0000011111111110 00000 00000000000 00
Q ss_pred HHccccCCccccccchhHHHHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCC
Q 001095 859 LSCCVAGHIKVTDAGEDIQETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQS 938 (1158)
Q Consensus 859 ~~c~h~~~~~~~~~~~~~~~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~ 938 (1158)
.+-+|.- + ....++.+.+-........ .....+... .+..-. -.|+.
T Consensus 336 ll~~~gi--r-------~~~~l~~~~~f~~e~~~~k--~~~~~~e~~----~~~~~~------------------~~m~~ 382 (746)
T KOG0354|consen 336 LLISDGI--R-------FVDALDYLEDFYEEVALKK--YLKLELEAR----LIRNFT------------------ENMNE 382 (746)
T ss_pred HHhhcch--h-------hHHHHhhhhhhccccchhH--HHHHHhcch----hhHHHH------------------HHHHh
Confidence 1111100 0 0111111110000000000 000000000 000000 00000
Q ss_pred ccccCC-CCCCCCCCCCChhhhhhccccccccCchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHH---C
Q 001095 939 PEILTR-PENPNPKWPVPQDLIELQPSYRQWSNTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTV---A 1014 (1158)
Q Consensus 939 ~e~l~~-~~~~~~~~~~~~~lie~~~~~~~~~s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~---~ 1014 (1158)
-+.+.. +...+|+ -.+|.+.+.+.. ...++.++|||+.++...+.|..+|.. .
T Consensus 383 ~~~l~~~~~~~npk--------------------le~l~~~l~e~f---~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~ 439 (746)
T KOG0354|consen 383 LEHLSLDPPKENPK--------------------LEKLVEILVEQF---EQNPDSRTIIFVETRESALALKKWLLQLHEL 439 (746)
T ss_pred hhhhhcCCCccChh--------------------HHHHHHHHHHHh---hcCCCccEEEEEehHHHHHHHHHHHHhhhhc
Confidence 000000 0000111 123333333332 367889999999999999999999873 3
Q ss_pred CCeEEEEeC--------CCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhccccc
Q 001095 1015 GIKFAGMYS--------PMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086 (1158)
Q Consensus 1015 gi~~~~ldG--------~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRi 1086 (1158)
|++...+.| +|+..+.++.++.|+++ .+.||++|..|-+||+...+|-||-||..-||..+.||.|| +|
T Consensus 440 ~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR- 516 (746)
T KOG0354|consen 440 GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR- 516 (746)
T ss_pred ccccceeeeccccccccccCHHHHHHHHHHHhCC-CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc-
Confidence 666666655 47778889999999985 68999999999999999999999999999999999999999 55
Q ss_pred CCCCcEEEEEEEe
Q 001095 1087 GATRPIHVETLAM 1099 (1158)
Q Consensus 1087 GQ~k~V~V~rLi~ 1099 (1158)
.+.=.++-|.+
T Consensus 517 --a~ns~~vll~t 527 (746)
T KOG0354|consen 517 --ARNSKCVLLTT 527 (746)
T ss_pred --ccCCeEEEEEc
Confidence 44444444444
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.66 E-value=1.3e-14 Score=181.10 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHHHHH--CCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC-CcChHHHHHhc
Q 001095 1006 VIEQQLTV--AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW-DRSMEEQVISR 1082 (1158)
Q Consensus 1006 ~L~~~L~~--~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W-NP~~e~QAigR 1082 (1158)
.+.+.|.. .++++..++|+++.++|.+++++|+++ ...||++|.+.++|+|+..++.||+++++. +-+...|++||
T Consensus 471 ~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GR 549 (630)
T TIGR00643 471 ALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG-EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGR 549 (630)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhh
Confidence 34444443 478899999999999999999999976 578999999999999999999999999874 56788999999
Q ss_pred ccccCCCCcEE
Q 001095 1083 AHRMGATRPIH 1093 (1158)
Q Consensus 1083 ahRiGQ~k~V~ 1093 (1158)
+.|-|+.-.+.
T Consensus 550 vGR~g~~g~~i 560 (630)
T TIGR00643 550 VGRGDHQSYCL 560 (630)
T ss_pred cccCCCCcEEE
Confidence 99998765444
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.65 E-value=1.7e-14 Score=183.78 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=94.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
.+.+++||++.....+.+.+.|.+. ++++..++|.|+.++|.+++++|.++ .+.|||+|...+.|+|+..+++||++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILVaT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLVCTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcccccccCCEEEEe
Confidence 3568999999999999999999885 88999999999999999999999976 57999999999999999999999999
Q ss_pred CCC-CCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1068 EPI-WDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1068 Dp~-WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
+++ +..+...|++||++|.|+.- ++|-|+..
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 885 45567889999999998654 45555544
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.64 E-value=1.3e-14 Score=182.13 Aligned_cols=104 Identities=15% Similarity=0.041 Sum_probs=97.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
+...|||+......+.+...|...|++...++|+++.++|..++++|.++ .+.||++|.+.|.|||+...++||+|+++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 45789999999999999999999999999999999999999999999876 57899999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEE
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
-+.....|++||++|.|+.-.+..|
T Consensus 759 kSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 759 KSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCHHHHHhhhcccCCCCCCceEEEE
Confidence 9999999999999999988765554
No 45
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.64 E-value=2.6e-14 Score=185.12 Aligned_cols=105 Identities=14% Similarity=0.242 Sum_probs=86.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHC------CC---eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVA------GI---KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFV 1061 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~------gi---~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~A 1061 (1158)
+.|+|||+....+.+.+.+.|.+. ++ .+..++|+++ ++.+++++|.++..++|+++++..++|+|....
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999888877653 23 3456899874 678899999987666888888999999999999
Q ss_pred CEEEEECCCCCcChHHHHHhcccccCC---CCcEEEEEE
Q 001095 1062 TRVFLMEPIWDRSMEEQVISRAHRMGA---TRPIHVETL 1097 (1158)
Q Consensus 1062 n~VI~~Dp~WNP~~e~QAigRahRiGQ---~k~V~V~rL 1097 (1158)
++|||+.|.-++....|+|||+-|.-- +....|+.+
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 999999999999999999999999854 334555443
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.62 E-value=3.3e-14 Score=178.64 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=73.6
Q ss_pred HHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC-CcChHHHHHhc
Q 001095 1006 VIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW-DRSMEEQVISR 1082 (1158)
Q Consensus 1006 ~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W-NP~~e~QAigR 1082 (1158)
.+.+.|... ++++..++|+++.++|.+++++|.++ ...||++|.+.+.|+|+..++.||+++++- ..+...|++||
T Consensus 494 ~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GR 572 (681)
T PRK10917 494 ETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGR 572 (681)
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhc
Confidence 344555543 57899999999999999999999976 578999999999999999999999999874 46788999999
Q ss_pred ccccCCCCcEE
Q 001095 1083 AHRMGATRPIH 1093 (1158)
Q Consensus 1083 ahRiGQ~k~V~ 1093 (1158)
++|-|..-.+.
T Consensus 573 vGR~g~~g~~i 583 (681)
T PRK10917 573 VGRGAAQSYCV 583 (681)
T ss_pred ccCCCCceEEE
Confidence 99998754433
No 47
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=3.9e-14 Score=166.12 Aligned_cols=106 Identities=21% Similarity=0.161 Sum_probs=98.9
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
..++.|+|||++.....+-|+..|+..+++...|+|..+..+|..+++.|.++ ++.||++|..++.||++...++||+|
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-KSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-CcceEEEcccccccCCCccccEEEeC
Confidence 34678999999999999999999999999999999999999999999999877 57899999999999999999999999
Q ss_pred CCCCCcChHHHHHhcccccCCCCcEEE
Q 001095 1068 EPIWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1068 Dp~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
|+|-|.....+|+||..|-|++-..+.
T Consensus 417 dfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 417 DFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred CCCCCHHHHHhhcCccccCCCCceEEE
Confidence 999999999999999999888775443
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.60 E-value=3.9e-14 Score=184.25 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=91.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEEC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLME 1068 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~D 1068 (1158)
+.+++||++....++.+.+.|.+. ++++..++|.|+.++|.+++.+|.++ .+.|||+|...+.|+|+..+++||+.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEEECchhhcccccccCCEEEEec
Confidence 468999999999999999999887 78899999999999999999999976 579999999999999999999999887
Q ss_pred CC-CCcChHHHHHhcccccCCCCcEE
Q 001095 1069 PI-WDRSMEEQVISRAHRMGATRPIH 1093 (1158)
Q Consensus 1069 p~-WNP~~e~QAigRahRiGQ~k~V~ 1093 (1158)
++ ++.+...|++||++|.|++-.++
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEE
Confidence 64 67778999999999998765433
No 49
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.56 E-value=5.4e-13 Score=171.74 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHC------CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVA------GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTR 1063 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~------gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~ 1063 (1158)
.+.++|||++.....+.+...|... +..+..++|+++.++|..+.+.|+++ .+++|++|.+.+.|||+...++
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKVVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeEEEECChHHhcCCCCCCcE
Confidence 3568999999999999999988762 46788899999999999999999977 5799999999999999999999
Q ss_pred EEEECCCCCcChHHHHHhccccc-CCCCcEEEEE
Q 001095 1064 VFLMEPIWDRSMEEQVISRAHRM-GATRPIHVET 1096 (1158)
Q Consensus 1064 VI~~Dp~WNP~~e~QAigRahRi-GQ~k~V~V~r 1096 (1158)
||+++++.+.+...|++||++|- |+...-.++-
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999875 5555555553
No 50
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.53 E-value=3.7e-14 Score=140.34 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=99.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
++.++|||+......+.+.++|.+.++.+..++|+++..+|..+++.|+++. ..++++|.++++|+|++.+++||++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~ili~t~~~~~G~d~~~~~~vi~~~~ 105 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE-IVVLVATDVIARGIDLPNVSVVINYDL 105 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC-CcEEEEcChhhcCcChhhCCEEEEeCC
Confidence 6789999999999999999999999999999999999999999999999875 788888999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEE
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
+|++....|++||++|.||++.|+++
T Consensus 106 ~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 106 PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999998887764
No 51
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.52 E-value=2.7e-15 Score=122.05 Aligned_cols=47 Identities=47% Similarity=1.083 Sum_probs=31.2
Q ss_pred Cceeeccchhhhhhccccccc--C-CCccceeccCCCccCcCCCCCcccc
Q 001095 433 ETWVQCDACHKWRKLLDASVA--D-ATAAWFCSMNSDPTHQSCGDPEEAW 479 (1158)
Q Consensus 433 ~~wvqc~~c~kwr~~~~~~~~--~-~~~~w~c~~n~~~~~~sC~~pEe~~ 479 (1158)
+.|||||.|.|||+||.+... . .++.|+|+||+|+.+.||++|||.+
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~e 50 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEIE 50 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS-
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccCC
Confidence 479999999999999998875 3 4679999999999999999999853
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.51 E-value=1.2e-12 Score=166.84 Aligned_cols=83 Identities=17% Similarity=0.037 Sum_probs=68.8
Q ss_pred eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----EC-----CCCCcChHHHHHhcccccC
Q 001095 1017 KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----ME-----PIWDRSMEEQVISRAHRMG 1087 (1158)
Q Consensus 1017 ~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~D-----p~WNP~~e~QAigRahRiG 1087 (1158)
.+..++|+++..+|..+.+.|+++ .++||++|.+.+.|+|+.+.+.||. || .+.++....|++||++|.|
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G-~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDR-LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcC-CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 467789999999999999999976 6899999999999999998877775 66 4567778999999999999
Q ss_pred CCCcEEEEEEEeC
Q 001095 1088 ATRPIHVETLAMR 1100 (1158)
Q Consensus 1088 Q~k~V~V~rLi~~ 1100 (1158)
....-.++-++..
T Consensus 384 ~d~~G~~ii~~~~ 396 (737)
T PRK02362 384 LDPYGEAVLLAKS 396 (737)
T ss_pred CCCCceEEEEecC
Confidence 8765455544433
No 53
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.8e-12 Score=156.13 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=104.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC
Q 001095 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW 1071 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W 1071 (1158)
.++|||+.-....+.|...|...|++...|+|+++..+|..+++.|+++ .+.|||+|++++.||++...+|||+||++.
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLVaTDvaaRGiDi~~v~~VinyD~p~ 352 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLVATDVAARGLDIPDVSHVINYDLPL 352 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEEechhhccCCccccceeEEccCCC
Confidence 3799999999999999999999999999999999999999999999944 689999999999999999999999999999
Q ss_pred CcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 001095 1072 DRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDT 1114 (1158)
Q Consensus 1072 NP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K 1114 (1158)
++....++|||..|.|.+- ..+.|++. .-|...+..++..
T Consensus 353 ~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 353 DPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred CHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 9999999999999999444 45556766 2255555555444
No 54
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.48 E-value=1e-11 Score=157.12 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=100.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHC--------CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVA--------GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVT 1062 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~--------gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An 1062 (1158)
+.++|||++.....+.+...|... +.+...++|+++.++|.++.++|+++ .+.+|++|.+.+.|||+...+
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~vLVaTd~lerGIDI~~vd 349 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELLGVATTNALELGVDISGLD 349 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-CceEEEECchHhccCCccccc
Confidence 579999999999999999888763 56778899999999999999999976 578999999999999999999
Q ss_pred EEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHH
Q 001095 1063 RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109 (1158)
Q Consensus 1063 ~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~ 1109 (1158)
+||+++.|-+.....|++||+.|.|+.-- ++.++..+..|..++.
T Consensus 350 ~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 350 AVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred EEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 99999999999999999999999997653 3445555666665544
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.48 E-value=2.2e-12 Score=151.07 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=92.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCC--eEEEEeCCCCHHHHHH----HHHHhccCCCeeEEEEeCccccccCcccCCE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGI--KFAGMYSPMHSSNKIK----SLDMFRHDASCLALLMDGSASLGLDLSFVTR 1063 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi--~~~~ldG~t~~~~R~~----~i~~F~~~~~~~VLL~s~agg~GLNLt~An~ 1063 (1158)
.+.++|||++.....+.+.+.|.+.+. .+..++|.++..+|.+ +++.|.++ ...+|++|.+.+.|+|+. ++.
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVATQVIEASLDIS-ADV 298 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEECcchhceeccC-CCE
Confidence 467999999999999999999988776 4899999999999876 48899875 568999999999999994 788
Q ss_pred EEEECCCCCcChHHHHHhcccccCCCC----cEEEEEEEeCC---CHHHHHHH
Q 001095 1064 VFLMEPIWDRSMEEQVISRAHRMGATR----PIHVETLAMRG---TVEEQMLE 1109 (1158)
Q Consensus 1064 VI~~Dp~WNP~~e~QAigRahRiGQ~k----~V~V~rLi~~~---TIEE~Il~ 1109 (1158)
||.++.+ +....|++||+.|.|... .|+|+.....+ ..+..+++
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 349 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVE 349 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHH
Confidence 8887654 678899999999999764 45555544444 34444443
No 56
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.48 E-value=2.1e-12 Score=142.71 Aligned_cols=114 Identities=22% Similarity=0.241 Sum_probs=105.6
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
...+.-+|||+..-.+.+.+.-.|...|+....++|.|+...|..+++.|+++ .+.||++|+.|+.||+.+.+++||+|
T Consensus 297 e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv~TDVaSRGLDip~Vd~VVNy 375 (476)
T KOG0330|consen 297 ELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILVCTDVASRGLDIPHVDVVVNY 375 (476)
T ss_pred hhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEEecchhcccCCCCCceEEEec
Confidence 34568999999999999999999999999999999999999999999999977 57899999999999999999999999
Q ss_pred CCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1068 EPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1068 Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
|.|-+-.....|.||+.|-| +.-.+..|++.-.||
T Consensus 376 DiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 376 DIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred CCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 99999999999999999999 777788899985444
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=99.48 E-value=1.3e-11 Score=156.12 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=60.9
Q ss_pred EEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC---------CCcChHHHHHhcccccCC
Q 001095 1018 FAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI---------WDRSMEEQVISRAHRMGA 1088 (1158)
Q Consensus 1018 ~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~---------WNP~~e~QAigRahRiGQ 1088 (1158)
+..++|+++.++|..+.+.|+++ .++||++|.+.+.|+|+.+ .+||++|.. +++....|++||++|.|.
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~g-~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRNR-YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHcC-CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 45679999999999999999966 6899999999999999985 688887653 355567899999999997
Q ss_pred CCc
Q 001095 1089 TRP 1091 (1158)
Q Consensus 1089 ~k~ 1091 (1158)
...
T Consensus 366 d~~ 368 (674)
T PRK01172 366 DQY 368 (674)
T ss_pred CCc
Confidence 665
No 58
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.47 E-value=1.2e-14 Score=172.20 Aligned_cols=84 Identities=30% Similarity=0.457 Sum_probs=66.3
Q ss_pred ccCCC-cccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCc
Q 001095 158 SIMPC-MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLG 236 (1158)
Q Consensus 158 ~~~p~-l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLG 236 (1158)
..+|+ +-..|+|||++||+||.+ +|- +-.||||+||||||
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~-----------------------L~~----------------q~~GGILgDeMGLG 236 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWE-----------------------LYC----------------QRAGGILGDEMGLG 236 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHH-----------------------HHh----------------ccCCCeecccccCc
Confidence 45664 777999999999999977 221 22599999999999
Q ss_pred hhHHHHHHHHhh-------CCCcccCCccccccceec----cCCCeeeeeccCCC
Q 001095 237 KTITALSLILKT-------QGTLADPPDGVKIIWCTH----NGDPRCGYYDLSGD 280 (1158)
Q Consensus 237 KTl~~LalI~~~-------~~~~~~~P~~~~~~W~~~----~~~~~~~yy~~~~~ 280 (1158)
||||+||++++- .+.+|+||.+++.||+++ .+.-+...|+.+++
T Consensus 237 KTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv~ilh~t~s 291 (923)
T KOG0387|consen 237 KTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRVFILHGTGS 291 (923)
T ss_pred cchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEEEEEecCCc
Confidence 999999999853 467899999999999977 55555555555444
No 59
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.45 E-value=9.7e-14 Score=125.21 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=74.4
Q ss_pred HHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccC
Q 001095 1009 QQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMG 1087 (1158)
Q Consensus 1009 ~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiG 1087 (1158)
++|+..|+++..++|+++..+|+++++.|+++.. .||++|.++++|+|++.+++||+++++||+..+.|++||++|+|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI-RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS-SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc-eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 4688999999999999999999999999998755 89999999999999999999999999999999999999999998
No 60
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.43 E-value=4.1e-14 Score=165.18 Aligned_cols=78 Identities=37% Similarity=0.602 Sum_probs=66.1
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001095 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
+++..|+|||+.|+.||++||+.+. .|||||||||||||+++
T Consensus 321 g~~v~LmpHQkaal~Wl~wRE~q~~--------------------------------------~GGILaddmGLGKTlsm 362 (901)
T KOG4439|consen 321 GLKVELMPHQKAALRWLLWRESQPP--------------------------------------SGGILADDMGLGKTLSM 362 (901)
T ss_pred cceeecchhhhhhhhhhcccccCCC--------------------------------------CCcccccccccccchHH
Confidence 8999999999999999999996532 39999999999999999
Q ss_pred HHHHHhh--------------CCCcccCCccccccceec-------cCCCeeeeecc
Q 001095 242 LSLILKT--------------QGTLADPPDGVKIIWCTH-------NGDPRCGYYDL 277 (1158)
Q Consensus 242 LalI~~~--------------~~~~~~~P~~~~~~W~~~-------~~~~~~~yy~~ 277 (1158)
||||+.. ..|+|+||.+++.||..+ +...++-||.-
T Consensus 363 islil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~ 419 (901)
T KOG4439|consen 363 ISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGP 419 (901)
T ss_pred HHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCC
Confidence 9999942 159999999999999944 66666666633
No 61
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.42 E-value=1.8e-11 Score=153.45 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=96.8
Q ss_pred ccchhhHHhhhHHHHhhcccccccc-cCCCcEEeecccCCcccchHHHHHHHHh-------cCCEEEEECc-ccHHHHHH
Q 001095 560 GFHKIFQAFGLIRRVEKGITRWYYP-KTLDNLAFDLAALRLALCEPLDSVRLYL-------SRATLIVVPS-YLVDHWKT 630 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~-~~~ggILaDelad~mGLGKTlqaiall~-------s~~tLIVvP~-sLl~qW~~ 630 (1158)
.+.+.||..++.+.++.-. +...+ ...+|++.- ..|.|||++++.+.. ..++|||||. .|..||.+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~-~~~~~~~~~~gli~~----~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESIT-RKTWGKDERGGLIWH----TQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred eehHHHHHHHHHHHHHHHH-hcccCCCCceeEEEE----ecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHH
Confidence 3578999988866554321 11112 235688776 599999999987632 2579999996 58999999
Q ss_pred HHHhhcCCCCeEEEEecCCCCcccccc--cCCCCEEEeechhhhhhhhcCCCCCccc-ccceEEEEccccccCCCchHHH
Q 001095 631 QIQQHVRPGQLHLFVWTDHKKPSAHSL--AWDYDVVITTFNRLSAEWGRRKKSPMMQ-VHWLRVMLDEGHTLGSSLNLTN 707 (1158)
Q Consensus 631 Ei~k~~~~~~l~v~v~~g~~~~~~~~l--~~~~DVVItTY~~L~~e~~~~~~~~L~~-~~w~rVIlDEAH~ikn~~s~t~ 707 (1158)
+|.++.... . ... + ........ ..+.+|+|+|++.+........ ..+.. ....+||+||||+..... .
T Consensus 312 ~f~~~~~~~-~--~~~-~-s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~-~~~~~~~~~~lvIvDEaHrs~~~~---~ 382 (667)
T TIGR00348 312 EFQSLQKDC-A--ERI-E-SIAELKRLLEKDDGGIIITTIQKFDKKLKEEE-EKFPVDRKEVVVIFDEAHRSQYGE---L 382 (667)
T ss_pred HHHhhCCCC-C--ccc-C-CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhh-hccCCCCCCEEEEEEcCccccchH---H
Confidence 999986421 1 000 0 01111111 1246899999999985322111 11111 122389999999876432 1
Q ss_pred HHHHHHHcccCeEEEEeCCCCCCC
Q 001095 708 KLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 708 ~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
...+-..++...++++||||+...
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~ 406 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKK 406 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccc
Confidence 111224577788999999999753
No 62
>PRK00254 ski2-like helicase; Provisional
Probab=99.41 E-value=3.1e-11 Score=153.56 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=81.1
Q ss_pred CcccchHHHHH-HHH---h--cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechh
Q 001095 598 RLALCEPLDSV-RLY---L--SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670 (1158)
Q Consensus 598 ~mGLGKTlqai-all---~--s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~ 670 (1158)
..|.|||+.+. +++ . .+.+|+|+|. .|+.|+.+++.+|.. -.+++..++|...... .....+||+|+|++.
T Consensus 47 pTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~-~~~~~~~IiV~Tpe~ 124 (720)
T PRK00254 47 PTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTD-EWLGKYDIIIATAEK 124 (720)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCch-hhhccCCEEEEcHHH
Confidence 59999998873 332 1 3689999995 588999999988643 2377777777543322 233478999999988
Q ss_pred hhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHH-HHHHc-ccCeEEEEeCCCC
Q 001095 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ-MAISL-TASNRWLLTGTPT 728 (1158)
Q Consensus 671 L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~-~~~~L-~a~~RwlLTGTPi 728 (1158)
+..-... ....+ -...+||+||+|.+.+... ..... .+..+ ...+.++||+|.-
T Consensus 125 ~~~ll~~-~~~~l--~~l~lvViDE~H~l~~~~r-g~~le~il~~l~~~~qiI~lSATl~ 180 (720)
T PRK00254 125 FDSLLRH-GSSWI--KDVKLVVADEIHLIGSYDR-GATLEMILTHMLGRAQILGLSATVG 180 (720)
T ss_pred HHHHHhC-Cchhh--hcCCEEEEcCcCccCCccc-hHHHHHHHHhcCcCCcEEEEEccCC
Confidence 7644321 11122 2457899999999975421 12222 22233 3456788999974
No 63
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.40 E-value=3.7e-14 Score=173.48 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=83.9
Q ss_pred ccccCCCCCccCCCCCCCCCCCCcHHHHHHHHhhcCCCcHHHHHHHhhhhhhcccccCC-CcccCChHHHHHHHHHHHhc
Q 001095 103 DWKPDSSRVKPEDNSCSTGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMP-CMKLKLFPHQQAAVEWMLHR 181 (1158)
Q Consensus 103 ~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~L~~yQ~~~l~Wml~r 181 (1158)
-||+.+++++|.+...+ .+.++|.+.++..-. ....++++.+ ..+.+...+| .++.+||.||++||+|+..
T Consensus 918 ~~fa~lip~~~le~g~~-~p~gls~eLl~~ke~--erkFLeqlld----pski~~y~Ip~pI~a~LRkYQqEGVnWLaF- 989 (1549)
T KOG0392|consen 918 KVFAKLIPLLPLEAGIP-DPTGLSKELLASKEE--ERKFLEQLLD----PSKIPEYKIPVPISAKLRKYQQEGVNWLAF- 989 (1549)
T ss_pred HHHHHHhcccccccCCC-CCccccHHHHHhHHH--HHHHHHHhcC----cccCCccccccchhHHHHHHHHhccHHHHH-
Confidence 45677888888874222 234566666554311 1222333333 3566766777 6999999999999999955
Q ss_pred cccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHHHhh-------------
Q 001095 182 EWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKT------------- 248 (1158)
Q Consensus 182 E~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI~~~------------- 248 (1158)
.|.|. ..||||||||||||+|+|+.|+..
T Consensus 990 ------------------------Lnky~--------------LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~ 1031 (1549)
T KOG0392|consen 990 ------------------------LNKYK--------------LHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNR 1031 (1549)
T ss_pred ------------------------HHHhc--------------ccceeeccccccHHHHHHHHHHHHHHhhcccchhhcc
Confidence 33332 379999999999999999999853
Q ss_pred CCCcccCCccccccceec
Q 001095 249 QGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 249 ~~~~~~~P~~~~~~W~~~ 266 (1158)
.+.+++||+++..+|+.+
T Consensus 1032 ~PSLIVCPsTLtGHW~~E 1049 (1549)
T KOG0392|consen 1032 LPSLIVCPSTLTGHWKSE 1049 (1549)
T ss_pred CCeEEECCchhhhHHHHH
Confidence 257899999999999965
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.6e-10 Score=143.86 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=97.9
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCc---ccCC---
Q 001095 989 ALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDL---SFVT--- 1062 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNL---t~An--- 1062 (1158)
..+.++|||+......+.+...|.+.|+++..++|.+...++..+...|+.+ .|+|+|..+|.|+++ ...+
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---AVTVATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---eEEEEccchhcCcCCCccccccccc
Confidence 4689999999999999999999999999999999998877777777776643 699999999999999 4676
Q ss_pred --EEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001095 1063 --RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1063 --~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
|||.+|++-|+..+.|++||+.|.|+.-.... ++ |.|+.++....
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~~~ 549 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKRFA 549 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHhhc
Confidence 99999999999999999999999998864433 33 34667765443
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.35 E-value=9.9e-11 Score=144.43 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=93.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS-------- 1059 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt-------- 1059 (1158)
...+..||||+......+.+...|.+.|+++..++|.+...+|..+...|+.+ .|+|+|..+|.|+++.
T Consensus 421 ~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~VlIATdmAgRGtDI~l~~~v~~~ 497 (762)
T TIGR03714 421 HETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---AVTVATSMAGRGTDIKLGKGVAEL 497 (762)
T ss_pred hhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---eEEEEccccccccCCCCCcccccc
Confidence 35788999999999999999999999999999999999877776666666544 6999999999999998
Q ss_pred -cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001095 1060 -FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110 (1158)
Q Consensus 1060 -~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~ 1110 (1158)
..++|+.++++-+. .+.|++||+.|.|..-.... |++ .|+.++.+
T Consensus 498 GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~~--~is---~eD~l~~~ 543 (762)
T TIGR03714 498 GGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQF--FVS---LEDDLIKR 543 (762)
T ss_pred CCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEEE--EEc---cchhhhhh
Confidence 77999999998665 55999999999997775433 343 35555544
No 66
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.35 E-value=3.8e-11 Score=136.34 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=99.4
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHH----HCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLT----VAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTR 1063 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~----~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~ 1063 (1158)
..+..++|+|+...+....+...|+ ...+++..++|+.+.+.|.+.+++|+.+ .+.|||+|++.+.|+++-..+.
T Consensus 426 ~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcSD~laRGiDv~~v~~ 504 (620)
T KOG0350|consen 426 SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICSDALARGIDVNDVDN 504 (620)
T ss_pred HhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEehhhhhcCCcccccce
Confidence 4467899999999998877777776 3467777799999999999999999877 5799999999999999999999
Q ss_pred EEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHH
Q 001095 1064 VFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109 (1158)
Q Consensus 1064 VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~ 1109 (1158)
||.||||-.-.....|+||..|-||.- ++|.|+... |++.+.
T Consensus 505 VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~~r~F~ 546 (620)
T KOG0350|consen 505 VINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--EKRLFS 546 (620)
T ss_pred EeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc--cchHHH
Confidence 999999999999999999999999876 556666654 444443
No 67
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.33 E-value=5.1e-13 Score=150.20 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=64.3
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001095 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
+|..+|+|||+++|.|+...|.+ .+.|||||||||+|||||+
T Consensus 180 dlii~LL~fQkE~l~Wl~~QE~S--------------------------------------s~~GGiLADEMGMGKTIQt 221 (791)
T KOG1002|consen 180 DLIIPLLPFQKEGLAWLTSQEES--------------------------------------SVAGGILADEMGMGKTIQT 221 (791)
T ss_pred cceecchhhhHHHHHHHHHhhhh--------------------------------------hhccceehhhhccchHHHH
Confidence 78999999999999999886632 3459999999999999999
Q ss_pred HHHHHhh---CCCcccCCccccccceec------cCCCeeeeeccC
Q 001095 242 LSLILKT---QGTLADPPDGVKIIWCTH------NGDPRCGYYDLS 278 (1158)
Q Consensus 242 LalI~~~---~~~~~~~P~~~~~~W~~~------~~~~~~~yy~~~ 278 (1158)
|||+++. .++++++|+-.+.||..+ +..+...||...
T Consensus 222 IaLllae~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~~ 267 (791)
T KOG1002|consen 222 IALLLAEVDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGAK 267 (791)
T ss_pred HHHHHhccccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEeccc
Confidence 9999963 578999999999999933 444455555433
No 68
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=8.7e-11 Score=142.43 Aligned_cols=95 Identities=20% Similarity=0.180 Sum_probs=75.5
Q ss_pred HHHHHHHHHHC--CCeEEEEeCCCCHHHH--HHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC---Cc---
Q 001095 1004 IHVIEQQLTVA--GIKFAGMYSPMHSSNK--IKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW---DR--- 1073 (1158)
Q Consensus 1004 ld~L~~~L~~~--gi~~~~ldG~t~~~~R--~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W---NP--- 1073 (1158)
.+.+++.|.+. +.++.++|+.++..++ +++++.|.++ .+.|||.|...+.|+|+...+.|+++|.+- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 34666677665 7889999999876655 8999999875 578999999999999999999998776652 24
Q ss_pred ------ChHHHHHhcccccCCCCcEEEEEEEe
Q 001095 1074 ------SMEEQVISRAHRMGATRPIHVETLAM 1099 (1158)
Q Consensus 1074 ------~~e~QAigRahRiGQ~k~V~V~rLi~ 1099 (1158)
+...|+.||+.|.+....|.+...-.
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 46799999999988877776654433
No 69
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.32 E-value=1.7e-10 Score=143.67 Aligned_cols=103 Identities=14% Similarity=0.262 Sum_probs=87.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHH-----HHHHHhcc----CC------CeeEEEEeCcccc
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKI-----KSLDMFRH----DA------SCLALLMDGSASL 1054 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~-----~~i~~F~~----~~------~~~VLL~s~agg~ 1054 (1158)
.+.++|||++.....+.|.+.|.+.++ ..++|.++..+|. .++++|++ +. +..|||+|++++.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 457899999999999999999999887 8899999999999 78999986 21 3689999999999
Q ss_pred ccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCc--EEEEEE
Q 001095 1055 GLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRP--IHVETL 1097 (1158)
Q Consensus 1055 GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~--V~V~rL 1097 (1158)
|||+.+ ++||+...++ ....||+||++|.|.... ++|+.+
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 999986 8999866554 688999999999999653 455444
No 70
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.2e-11 Score=124.93 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=100.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC
Q 001095 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW 1071 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W 1071 (1158)
...|||++-....|+|.+.++..++.+..++|.|+.++|.+++..|+++. -+|||+|+.=+.|++.+..+.||+||+|-
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~-SrvLitTDVwaRGiDv~qVslviNYDLP~ 345 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK-SRVLITTDVWARGIDVQQVSLVINYDLPN 345 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC-ceEEEEechhhccCCcceeEEEEecCCCc
Confidence 47899999999999999999999999999999999999999999999875 48999999999999999999999999999
Q ss_pred CcChHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001095 1072 DRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1072 NP~~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
|+.....+|||.+|+|.+- .+..|+..+.+
T Consensus 346 nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 346 NRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred cHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 9999999999999999654 45577876643
No 71
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.32 E-value=1.9e-10 Score=142.46 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=99.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCC-CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAG-IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~g-i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
...+|||++-..+.+.+...|.+.+ .....-+|+.+.++|..+-++|+++. .+++++|.+.-.||+.-..+.||.+..
T Consensus 253 ~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-lravV~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 253 HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-LKAVVATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-ceEEEEccchhhccccCCceEEEEeCC
Confidence 3489999999999999999999986 88888999999999999999999886 899999999999999999999999999
Q ss_pred CCCcChHHHHHhcc-cccCCCCcEEEEEEEeCCCHHHHHHH
Q 001095 1070 IWDRSMEEQVISRA-HRMGATRPIHVETLAMRGTVEEQMLE 1109 (1158)
Q Consensus 1070 ~WNP~~e~QAigRa-hRiGQ~k~V~V~rLi~~~TIEE~Il~ 1109 (1158)
|-.-+...|++||+ ||+|.+-.-. +++.+ .++.+--
T Consensus 332 P~sV~r~lQRiGRsgHr~~~~Skg~---ii~~~-r~dllE~ 368 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGEVSKGI---IIAED-RDDLLEC 368 (814)
T ss_pred cHHHHHHhHhccccccccCCcccEE---EEecC-HHHHHHH
Confidence 99999999999999 7888755433 34555 4544433
No 72
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.31 E-value=2.4e-10 Score=136.49 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=66.5
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC-CCcChHHHHHhcccccCCCC
Q 001095 1015 GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI-WDRSMEEQVISRAHRMGATR 1090 (1158)
Q Consensus 1015 gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~-WNP~~e~QAigRahRiGQ~k 1090 (1158)
+++...++|.|+.+++++++.+|+++ .+.||++|.+.-+|+|..+|+-+|++++. +--+..-|=-||++|=+...
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEG-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcC-CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 66788999999999999999999976 57899999999999999999999999886 56678899999999955443
No 73
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.31 E-value=5e-12 Score=114.18 Aligned_cols=81 Identities=27% Similarity=0.348 Sum_probs=76.0
Q ss_pred HHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccc
Q 001095 1006 VIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHR 1085 (1158)
Q Consensus 1006 ~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahR 1085 (1158)
.|.+.|...++.+..++|+++.++|.++++.|+++.. .||++|.++++|+|++.+++||+++++||+....|++||++|
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 4678888889999999999999999999999998754 888888999999999999999999999999999999999999
Q ss_pred cC
Q 001095 1086 MG 1087 (1158)
Q Consensus 1086 iG 1087 (1158)
+|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 87
No 74
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.31 E-value=2.4e-10 Score=150.13 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=84.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCC---------------------------------CeEEEEeCCCCHHHHHHHHHH
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAG---------------------------------IKFAGMYSPMHSSNKIKSLDM 1036 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~g---------------------------------i~~~~ldG~t~~~~R~~~i~~ 1036 (1158)
.+.++|||++.....+.+...|.+.. +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35688999999999988888886531 113567899999999999999
Q ss_pred hccCCCeeEEEEeCccccccCcccCCEEEEECCCCCcChHHHHHhccccc
Q 001095 1037 FRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRM 1086 (1158)
Q Consensus 1037 F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRi 1086 (1158)
|+++ .++++++|.+.+.|||+...++||.|+.+.+.+...|++||+.|.
T Consensus 323 fK~G-~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSG-ELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhC-CceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9987 579999999999999999999999999999999999999999885
No 75
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=1.4e-10 Score=134.39 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=105.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
..++++||.+-....+.+..+|...++++..|+|..+..+|.+.++.|.++ .+.+||+|..++.|||.....|||+||.
T Consensus 336 ~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~~V~hVInyDm 414 (482)
T KOG0335|consen 336 KWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG-KAPVLVATNVAARGLDIPNVKHVINYDM 414 (482)
T ss_pred ccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC-CcceEEEehhhhcCCCCCCCceeEEeec
Confidence 446999999999999999999999999999999999999999999999877 5779999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQD 1113 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~ 1113 (1158)
+=+-.....+|||..|.|+.-..+.+.--..-.|=+.+.+++.+
T Consensus 415 P~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 415 PADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred CcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99988999999999999999876665442222344444444433
No 76
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=8.6e-10 Score=134.73 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=92.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc---cCC----
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS---FVT---- 1062 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt---~An---- 1062 (1158)
.+..+|||+......+.+...|.+.|+++..++|.++ +|+..+..|...+ ..|+|+|..+|.|+++. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g~VlVATdmAgRGtDI~l~~~V~~~GG 548 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-GRITVATNMAGRGTDIKLEPGVAARGG 548 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-CcEEEEccchhcccCcCCccchhhcCC
Confidence 4577999999999999999999999999999999864 5566666665443 36999999999999988 444
Q ss_pred -EEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001095 1063 -RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1063 -~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
|||.+|.+-|...+.|++||+.|.|..-.+. .++ |.|+.++....
T Consensus 549 LhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~~~ 594 (656)
T PRK12898 549 LHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQSFL 594 (656)
T ss_pred CEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHhhh
Confidence 9999999999999999999999999765433 334 34666665443
No 77
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.28 E-value=2.8e-10 Score=126.11 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=105.4
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
..+.+|+|||.....+.|-|..-|...||..-.++|.-...+|+.+++.|+++ .+++|+.|+.++.||++...+||+.|
T Consensus 462 ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 462 MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEEEechhhcCCCchhcceeecc
Confidence 45779999999999999999999999999999999999999999999999977 68999999999999999999999999
Q ss_pred CCCCCcChHHHHHhcccccCCCCcEEEEEEEeCC--CHHHHHHHHHHH
Q 001095 1068 EPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG--TVEEQMLEFLQD 1113 (1158)
Q Consensus 1068 Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~--TIEE~Il~~l~~ 1113 (1158)
|.+-|-.....++||.+|-|.+-. .| .|++.+ +.-+.+.+++++
T Consensus 541 DFP~nIeeYVHRvGrtGRaGr~G~-si-s~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 541 DFPRNIEEYVHRVGRTGRAGRTGT-SI-SFLTRNDWSMAEELIQILER 586 (629)
T ss_pred CCCccHHHHHHHhcccccCCCCcc-eE-EEEehhhHHHHHHHHHHHHH
Confidence 999999999999999999997763 33 344444 333444455444
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.27 E-value=7.7e-11 Score=144.48 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=94.1
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCccc-------
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSF------- 1060 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~------- 1060 (1158)
...+..||||+......+.+...|.+.|+++..++|. ..+|+..+..|... ...|+|+|..+|.|+++..
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~-~g~VtIATnmAgRGtDI~l~~V~~~G 478 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGR-KGAVTIATNMAGRGTDIKLEEVKELG 478 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCC-CceEEEEeccccCCcCCCccchhhcC
Confidence 5678999999999999999999999999999999997 67899999999754 5689999999999999887
Q ss_pred CCEEEEECCCCCcChHHHHHhcccccCCCCcEEE
Q 001095 1061 VTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1061 An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
..|||.++++-|+..+.|++||+.|.|+.-....
T Consensus 479 Gl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 479 GLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred CcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 6799999999999999999999999998875444
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.27 E-value=5.2e-10 Score=140.49 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=79.7
Q ss_pred ccHHHHHHHHHHHHHC--CCeEEEEeCCCC--HHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC---C
Q 001095 999 QFLEHIHVIEQQLTVA--GIKFAGMYSPMH--SSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI---W 1071 (1158)
Q Consensus 999 qf~~~ld~L~~~L~~~--gi~~~~ldG~t~--~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~---W 1071 (1158)
.+..-.+.+++.|.+. +.++.++||++. ..+++++++.|.++ .+.|||.|...+.|+|+...+.|+++|.+ .
T Consensus 434 ~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~ 512 (679)
T PRK05580 434 PVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILIGTQMLAKGHDFPNVTLVGVLDADLGLF 512 (679)
T ss_pred EeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEEEChhhccCCCCCCcCEEEEEcCchhcc
Confidence 3344456778888776 888999999875 46789999999975 57899999999999999999999888765 3
Q ss_pred Cc---------ChHHHHHhcccccCCCCcEEEEEEEe
Q 001095 1072 DR---------SMEEQVISRAHRMGATRPIHVETLAM 1099 (1158)
Q Consensus 1072 NP---------~~e~QAigRahRiGQ~k~V~V~rLi~ 1099 (1158)
.| +...|+.||+.|.|....|.+...-.
T Consensus 513 ~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 513 SPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 33 46899999999988777777655433
No 80
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.26 E-value=1.4e-12 Score=154.04 Aligned_cols=75 Identities=27% Similarity=0.405 Sum_probs=60.8
Q ss_pred Ccc-cCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHH
Q 001095 162 CMK-LKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTIT 240 (1158)
Q Consensus 162 ~l~-~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~ 240 (1158)
+++ ..|++||.+||+||+. +|-|.. +||||||||||||+|
T Consensus 162 ~v~~g~lr~YQveGlnWLi~-----------------------l~engi----------------ngILaDEMGLGKTlQ 202 (971)
T KOG0385|consen 162 YVKGGELRDYQLEGLNWLIS-----------------------LYENGI----------------NGILADEMGLGKTLQ 202 (971)
T ss_pred hhcCCccchhhhccHHHHHH-----------------------HHhcCc----------------ccEeehhcccchHHH
Confidence 566 7999999999999988 444433 699999999999999
Q ss_pred HHHHHHh-------hCCCcccCCccccccceec-----cCCCeeeee
Q 001095 241 ALSLILK-------TQGTLADPPDGVKIIWCTH-----NGDPRCGYY 275 (1158)
Q Consensus 241 ~LalI~~-------~~~~~~~~P~~~~~~W~~~-----~~~~~~~yy 275 (1158)
+|||+.. ..+.++.+|.|++.||..+ +....+.||
T Consensus 203 tIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~ 249 (971)
T KOG0385|consen 203 TISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYH 249 (971)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEe
Confidence 9999873 2467889999999999976 444555555
No 81
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.25 E-value=1.6e-12 Score=157.46 Aligned_cols=79 Identities=29% Similarity=0.520 Sum_probs=64.9
Q ss_pred cCCC-cccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCch
Q 001095 159 IMPC-MKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGK 237 (1158)
Q Consensus 159 ~~p~-l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGK 237 (1158)
.+|. |.-.||.||+.||.||.. +|-+.. .|||||||||||
T Consensus 607 pvPsLLrGqLReYQkiGLdWLat-----------------------LYeknl----------------NGILADEmGLGK 647 (1958)
T KOG0391|consen 607 PVPSLLRGQLREYQKIGLDWLAT-----------------------LYEKNL----------------NGILADEMGLGK 647 (1958)
T ss_pred CchHHHHHHHHHHHHhhHHHHHH-----------------------HHHhcc----------------cceehhhhcccc
Confidence 4453 677999999999999987 444433 599999999999
Q ss_pred hHHHHHHHHh-------hCCCcccCCccccccceec-----cCCCeeeeec
Q 001095 238 TITALSLILK-------TQGTLADPPDGVKIIWCTH-----NGDPRCGYYD 276 (1158)
Q Consensus 238 Tl~~LalI~~-------~~~~~~~~P~~~~~~W~~~-----~~~~~~~yy~ 276 (1158)
|||+|||++. -.+.+||+|.+|+.+|+.+ .+.+.+.||.
T Consensus 648 TIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPglKILTYyG 698 (1958)
T KOG0391|consen 648 TIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGLKILTYYG 698 (1958)
T ss_pred hhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcceEeeecC
Confidence 9999999873 2478999999999999966 6677777774
No 82
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.24 E-value=5.5e-10 Score=127.66 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=99.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
....+|||.+.....|.|++.|++.|+.+++++|+-+.++|+.++..|.++. ..||++|.++|.||+....++||.||.
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t-~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGT-GDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcC-CCEEEEecccccCCCCCccceeeecch
Confidence 5678999999999999999999999999999999999999999999999863 479999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
.=+-.....+|||..|-||.-.+. .|+++.
T Consensus 595 aksieDYtHRIGRTgRAGk~Gtai--Sflt~~ 624 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAI--SFLTPA 624 (673)
T ss_pred hhhHHHHHHHhccccccccCceeE--EEeccc
Confidence 998889999999999999887543 456555
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.24 E-value=1e-09 Score=128.24 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCC--CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAG--IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~g--i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
++.|+|||++.....+.+...|+..| +.+..++|.++..+|.+.. ...||++|.+.+.|||+... +|| +
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLVaTdv~~rGiDi~~~-~vi-~ 341 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFDILLGTSTVDVGVDFKRD-WLI-F 341 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCCEEEEecHHhcccCCCCc-eEE-E
Confidence 67799999999999999999999865 5788999999998887553 46799999999999999864 666 5
Q ss_pred CCCCCcChHHHHHhccc
Q 001095 1068 EPIWDRSMEEQVISRAH 1084 (1158)
Q Consensus 1068 Dp~WNP~~e~QAigRah 1084 (1158)
+ +-++....|++||++
T Consensus 342 ~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred C-CCCHHHHhhhcccCC
Confidence 6 456778888888863
No 84
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.19 E-value=8.8e-12 Score=151.21 Aligned_cols=97 Identities=25% Similarity=0.313 Sum_probs=75.2
Q ss_pred HHHhhhhhhcccccCC-CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCC
Q 001095 146 AATCRHLRCLAASIMP-CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDF 224 (1158)
Q Consensus 146 ~~~~~~~~~~~~~~~p-~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 224 (1158)
..+.+.....+...+- ...-+|++||..||+||.. +|-|..
T Consensus 373 ys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVS-----------------------LyNNnL--------------- 414 (1157)
T KOG0386|consen 373 YSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVS-----------------------LYNNNL--------------- 414 (1157)
T ss_pred HHhcchhhhccccCcchhcCCCCchhhhhhhHHHhh-----------------------ccCCCc---------------
Confidence 3444444443333332 2345899999999999987 666665
Q ss_pred CCceeccCCCCchhHHHHHHHHh-------hCCCcccCCccccccceec----cCCCeeeeeccCCCc
Q 001095 225 HGGMFCDEPGLGKTITALSLILK-------TQGTLADPPDGVKIIWCTH----NGDPRCGYYDLSGDK 281 (1158)
Q Consensus 225 ~GGILaDeMGLGKTl~~LalI~~-------~~~~~~~~P~~~~~~W~~~----~~~~~~~yy~~~~~~ 281 (1158)
-||||||||||||||+||||+. ..|-++++|.+++.+|..+ +|...+++|.++...
T Consensus 415 -NGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~ 481 (1157)
T KOG0386|consen 415 -NGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQ 481 (1157)
T ss_pred -ccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHH
Confidence 4999999999999999999984 3578899999999999966 778888999777664
No 85
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.18 E-value=5.2e-12 Score=149.89 Aligned_cols=72 Identities=28% Similarity=0.476 Sum_probs=59.9
Q ss_pred cCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHH
Q 001095 165 LKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSL 244 (1158)
Q Consensus 165 ~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~Lal 244 (1158)
.+|.|||.-||+|++= +|-+.. -||||||||||||+|+||+
T Consensus 398 i~LkdYQlvGvNWL~L-----------------------lyk~~l----------------~gILADEMGLGKTiQvIaF 438 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLL-----------------------LYKKKL----------------NGILADEMGLGKTIQVIAF 438 (941)
T ss_pred CcccchhhhhHHHHHH-----------------------HHHccc----------------cceehhhccCcchhHHHHH
Confidence 3699999999999865 332222 4799999999999999999
Q ss_pred HHh------hCCCcccCCccccccceec-----cCCCeeeee
Q 001095 245 ILK------TQGTLADPPDGVKIIWCTH-----NGDPRCGYY 275 (1158)
Q Consensus 245 I~~------~~~~~~~~P~~~~~~W~~~-----~~~~~~~yy 275 (1158)
++. ..+.++|+|.|++.||.++ +..+...||
T Consensus 439 layLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~Yy 480 (941)
T KOG0389|consen 439 LAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYY 480 (941)
T ss_pred HHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEecc
Confidence 874 4578999999999999987 667777787
No 86
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.17 E-value=1.1e-09 Score=131.31 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=100.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+..-|||+..+...+.+.+.|...|+....++|+++.++|+.+-++|.++ ...|+++|.|-|.|+|=.....||+||+
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEeccccCccCCCCceEEEEecC
Confidence 445679999999999999999999999999999999999999999999976 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
|=+.....|=+|||+|-|..-.... |+....+.
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail--l~~~~D~~ 340 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL--LYSPEDIR 340 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE--eeccccHH
Confidence 9999999999999999997765544 56655433
No 87
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.15 E-value=1.3e-11 Score=157.66 Aligned_cols=66 Identities=29% Similarity=0.458 Sum_probs=55.3
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001095 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
.++.+|+|||.+||+||+..- - .-.|||||||||||||+|+
T Consensus 165 ~i~~~Lr~YQleGlnWLi~l~-----------------------~----------------~g~gGILADEMGLGKTlQa 205 (1033)
T PLN03142 165 CIKGKMRDYQLAGLNWLIRLY-----------------------E----------------NGINGILADEMGLGKTLQT 205 (1033)
T ss_pred HhccchHHHHHHHHHHHHHHH-----------------------h----------------cCCCEEEEeCCCccHHHHH
Confidence 578899999999999998721 0 0138999999999999999
Q ss_pred HHHHHh-------hCCCcccCCccccccceec
Q 001095 242 LSLILK-------TQGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 242 LalI~~-------~~~~~~~~P~~~~~~W~~~ 266 (1158)
||+|.. ..+.++|+|.+++.||..+
T Consensus 206 IalL~~L~~~~~~~gp~LIVvP~SlL~nW~~E 237 (1033)
T PLN03142 206 ISLLGYLHEYRGITGPHMVVAPKSTLGNWMNE 237 (1033)
T ss_pred HHHHHHHHHhcCCCCCEEEEeChHHHHHHHHH
Confidence 999873 2467899999999999966
No 88
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.13 E-value=1.7e-09 Score=123.85 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=98.3
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHC----------------------CCeEEEEeCCCCHHHHHHHHHHhccCCCeeE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVA----------------------GIKFAGMYSPMHSSNKIKSLDMFRHDASCLA 1045 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~----------------------gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~V 1045 (1158)
..+..|+|||-.-.++.+.=.+.|... +.++.+++|+|+.++|......|.....+ |
T Consensus 422 ~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~-V 500 (708)
T KOG0348|consen 422 FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA-V 500 (708)
T ss_pred hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce-E
Confidence 455669999988887766655544321 44699999999999999999999987665 9
Q ss_pred EEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhH
Q 001095 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1046 LL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~ 1115 (1158)
||+|++++.||+|....-||-||||..++....||||.-|+|-+-.-.. |+.+.-.| .+..++.+.
T Consensus 501 LLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae--y~~~l~~~~ 566 (708)
T KOG0348|consen 501 LLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE--YVNYLKKHH 566 (708)
T ss_pred EEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH--HHHHHHhhc
Confidence 9999999999999999999999999999999999999999998876544 34444333 445555543
No 89
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.13 E-value=5.5e-09 Score=129.63 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=90.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
.+.++|||..-....+.+.+.|... ++.+..++|+++. +++.+++|..+...+|||+|..++.||++...++||-+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 3468999999999999999999987 7999999999985 45777888544568999999999999999999999999
Q ss_pred CCCC------------CcChHHHHHhcccccCCCCcEEEEEEEeCCCHHH
Q 001095 1068 EPIW------------DRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105 (1158)
Q Consensus 1068 Dp~W------------NP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE 1105 (1158)
+..- +.+...||.||++|. ++=.+|+|+++...+.
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7222 444566777777776 5678899999887543
No 90
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.12 E-value=3.8e-10 Score=118.46 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=97.6
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh--cCCEEEEECc-ccHHHHHHHHHhhcCC
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL--SRATLIVVPS-YLVDHWKTQIQQHVRP 638 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~--s~~tLIVvP~-sLl~qW~~Ei~k~~~~ 638 (1158)
+++||.+.+......-... .....+++.. .+|.|||..++.++. ..++|||||. +|+.||.+++..+...
T Consensus 4 lr~~Q~~ai~~i~~~~~~~---~~~~~~ll~~----~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENK---KEERRVLLNA----PTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTT---SGCSEEEEEE----STTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHhc---CCCCCEEEEE----CCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhh
Confidence 6789998875444321000 1234456655 599999999997643 3599999997 7899999999887654
Q ss_pred CCeEEEEec--C----------CCCcc--cccccCCCCEEEeechhhhhhhhcCCC--------CCcccccceEEEEccc
Q 001095 639 GQLHLFVWT--D----------HKKPS--AHSLAWDYDVVITTFNRLSAEWGRRKK--------SPMMQVHWLRVMLDEG 696 (1158)
Q Consensus 639 ~~l~v~v~~--g----------~~~~~--~~~l~~~~DVVItTY~~L~~e~~~~~~--------~~L~~~~w~rVIlDEA 696 (1158)
. ....... . ..... ........++++++|+.+......... ..+....++.||+|||
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 K-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp S-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred h-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 2 2221110 0 00000 111234789999999999876543211 1234457899999999
Q ss_pred cccCCCchHHHHHHHHHHcccCeEEEEeCCCC
Q 001095 697 HTLGSSLNLTNKLQMAISLTASNRWLLTGTPT 728 (1158)
Q Consensus 697 H~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPi 728 (1158)
|++.+.. .++.+....+.+++.|||||.
T Consensus 156 H~~~~~~----~~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDS----SYREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHH----HHHHHHHSSCCEEEEEESS-S
T ss_pred hhcCCHH----HHHHHHcCCCCeEEEEEeCcc
Confidence 9998532 144555588899999999995
No 91
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.11 E-value=1.4e-11 Score=143.53 Aligned_cols=76 Identities=24% Similarity=0.422 Sum_probs=61.9
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001095 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
-|+++|+.||..||+|+.. +|-.- -.||||||||||||||+
T Consensus 563 il~ctLKEYQlkGLnWLvn-----------------------lYdqG----------------iNGILADeMGLGKTVQs 603 (1185)
T KOG0388|consen 563 ILKCTLKEYQLKGLNWLVN-----------------------LYDQG----------------INGILADEMGLGKTVQS 603 (1185)
T ss_pred hhhhhhHHHhhccHHHHHH-----------------------HHHcc----------------ccceehhhhccchhHHH
Confidence 3799999999999999987 33222 25999999999999999
Q ss_pred HHHHHhh-------CCCcccCCccccccceec-----cCCCeeeeec
Q 001095 242 LSLILKT-------QGTLADPPDGVKIIWCTH-----NGDPRCGYYD 276 (1158)
Q Consensus 242 LalI~~~-------~~~~~~~P~~~~~~W~~~-----~~~~~~~yy~ 276 (1158)
||+++.. .+-++++|.|++.+|+.+ +..+.|+|..
T Consensus 604 isvlAhLaE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywG 650 (1185)
T KOG0388|consen 604 ISVLAHLAETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWG 650 (1185)
T ss_pred HHHHHHHHHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcC
Confidence 9998742 467889999999999976 5566666663
No 92
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.10 E-value=8.6e-09 Score=130.86 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=93.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH---CCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTV---AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~---~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
+.++|||..-...++.+.+.|.. .++..+.++|+++.++|.++++.|.++ ..+|+|+|..+..||++...++||.+
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVlVATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVVLATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEEEecchHhhcccccCceEEEEc
Confidence 35799999999999999999987 489999999999999999999999866 57899999999999999999999998
Q ss_pred CCC----CCcCh--------------HHHHHhcccccCCCCcEEEEEEEeCCC
Q 001095 1068 EPI----WDRSM--------------EEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1068 Dp~----WNP~~--------------e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
+.+ +||.. ..||.||++|. ++=..|+|+++..
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 865 56654 56888888886 5678899998653
No 93
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.09 E-value=9.9e-10 Score=127.76 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=96.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
+-...|||+.-..-.+-+..+|...|+++..|.|.|+..+|..+++.+++- .++||++|+.-+.|++-..+|-||++|+
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rILVsTDLtaRGIDa~~vNLVVNiD~ 349 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRILVSTDLTARGIDADNVNLVVNIDA 349 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEEEecchhhccCCccccceEEecCC
Confidence 345778999999999999999999999999999999999999999998754 6999999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+-|......|||||+|.|..- ..|. |++.+
T Consensus 350 p~d~eTY~HRIGRAgRFG~~G-~aVT-~~~~~ 379 (980)
T KOG4284|consen 350 PADEETYFHRIGRAGRFGAHG-AAVT-LLEDE 379 (980)
T ss_pred CcchHHHHHHhhhcccccccc-eeEE-Eeccc
Confidence 999999999999999999765 3443 34443
No 94
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.09 E-value=4.4e-10 Score=111.43 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=88.6
Q ss_pred CcccchHHHHHHHHh-------cCCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCCccc--ccccCCCCEEEee
Q 001095 598 RLALCEPLDSVRLYL-------SRATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA--HSLAWDYDVVITT 667 (1158)
Q Consensus 598 ~mGLGKTlqaiall~-------s~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~--~~l~~~~DVVItT 667 (1158)
.+|.|||.+++.++. .+++||+||.. +..||.+++.++... ...+.++++...... .......+++++|
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t 86 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGT 86 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEEC
Confidence 699999999888753 27999999987 556777888888753 456666665443332 1223588999999
Q ss_pred chhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHH-HHHHHHcccCeEEEEeCCC
Q 001095 668 FNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK-LQMAISLTASNRWLLTGTP 727 (1158)
Q Consensus 668 Y~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~-~~~~~~L~a~~RwlLTGTP 727 (1158)
|+.+...... ..+....|++||+||+|.+.+....... ...........++++||||
T Consensus 87 ~~~~~~~~~~---~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 87 PGRLLDELER---LKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cHHHHHHHHc---CCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 9988866432 2244567999999999999986532211 1233346778899999998
No 95
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.06 E-value=7.8e-09 Score=118.88 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=106.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
...|.|||-..-....++.+.+.+. |++...++|.|+...|.++.++|... ...||++|+.++.||++.+.+.||-+
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~-~~~vLF~TDv~aRGLDFpaVdwViQ~ 390 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK-RAVVLFCTDVAARGLDFPAVDWVIQV 390 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh-cceEEEeehhhhccCCCcccceEEEe
Confidence 4468999999999999999999875 99999999999999999999999865 45789999999999999999999999
Q ss_pred CCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhH
Q 001095 1068 EPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1068 Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~ 1115 (1158)
|.|-+-.....|.||.-|++-.-+-.++ ++ -+=||.|+..++.|.
T Consensus 391 DCPedv~tYIHRvGRtAR~~~~G~sll~--L~-psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 391 DCPEDVDTYIHRVGRTARYKERGESLLM--LT-PSEEEAMLKKLQKKK 435 (758)
T ss_pred cCchhHHHHHHHhhhhhcccCCCceEEE--Ec-chhHHHHHHHHHHcC
Confidence 9999999999999999999988876664 22 344688888888773
No 96
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.05 E-value=3.5e-09 Score=120.74 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=100.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
..+++||.+.....+-+.-.|--.|++...++|+.+..+|-..++.|++. .+.|||+|+.++.||++.....||+|+.|
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLiaTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLIATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEEEechhhccCCccceeEEEeccCc
Confidence 36899999999999999999999999999999999999999999999865 68999999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHH
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~ 1109 (1158)
-.-.....++||.-|-|..- +-+.|+.++ |.+|+.
T Consensus 505 ~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~--dRkllK 539 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRAG--RSVTLVGES--DRKLLK 539 (691)
T ss_pred hhHHHHHHHhhhhhhcccCc--ceEEEeccc--cHHHHH
Confidence 88889999999999988543 344566666 555554
No 97
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.05 E-value=1.7e-08 Score=114.91 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=101.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
...|||||..-....+-|...|+..|+.+..++|++...+|.+.+..|+.. .+.||++++.++.||+...-.+||+||.
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk-~~~VlvatDvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK-RKPVLVATDVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc-CCceEEEeeHhhcCCCccccceeecccc
Confidence 346999999999999999999999999999999999999999999999876 4679999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
--+-....|+|||..|-|.+ -..|.|+++...+
T Consensus 546 ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 88888889999999999987 4678889876555
No 98
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.04 E-value=1.2e-08 Score=129.68 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=92.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH---CCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTV---AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~---~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
+..+|||..-...++.+.+.|.. .++.+..++|+++.++|.++++.|.++ ..+|+|+|..+..||++...++||.+
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkVlvATnIAErsLtIp~V~~VID~ 290 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKVVLATNIAETSLTIEGIRLVVDS 290 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEEEEecchHHhcccccCceEEEEC
Confidence 46899999999999999999987 588899999999999999999999765 57999999999999999999999996
Q ss_pred CCC----CCcC--------------hHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001095 1068 EPI----WDRS--------------MEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1068 Dp~----WNP~--------------~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
+.. +||. ...||.||++|. ++=..|+|+++...
T Consensus 291 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 291 GLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 654 4443 356777777765 57889999987644
No 99
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.03 E-value=1.4e-08 Score=115.30 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=95.0
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVF 1065 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI 1065 (1158)
....+|+|||-..-...++....|... +++.+.++|.++.+.|.++++.|.+. .-.||++|+.++.||++...+.||
T Consensus 252 ~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~-~~~vl~~TDVaARGlDip~iD~Vv 330 (567)
T KOG0345|consen 252 NNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL-SNGVLFCTDVAARGLDIPGIDLVV 330 (567)
T ss_pred ccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc-cCceEEeehhhhccCCCCCceEEE
Confidence 346689999988888888888777764 78899999999999999999999873 457999999999999999999999
Q ss_pred EECCCCCcChHHHHHhcccccCCCCcEEEE
Q 001095 1066 LMEPIWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1066 ~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
.||||-+|.....|.||..|.|..-.-.|+
T Consensus 331 Q~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 331 QFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred ecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 999999999999999999999988766654
No 100
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=1.3e-08 Score=110.22 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=96.8
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC
Q 001095 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW 1071 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W 1071 (1158)
...|||++.+...++++.-..+.|+.+..++..|-.+.|..+...|.++ .|+.|++|+..-.|++.|+.|.||+||.+-
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeehhhhhcccccceeeEEEecCCCC
Confidence 3679999999999999999999999999999999999999999999977 799999999999999999999999999999
Q ss_pred CcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1072 DRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1072 NP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
|+.....+|||.+|.|-.- .-..|++-
T Consensus 402 ~aEtYLHRIGRsGRFGhlG--lAInLity 428 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLG--LAINLITY 428 (459)
T ss_pred CHHHHHHHccCCccCCCcc--eEEEEEeh
Confidence 9999999999999999544 33456643
No 101
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.02 E-value=2.2e-09 Score=113.26 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=101.2
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHHHh-------cCCEEEEEC-cccHHHHHHHHH
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYL-------SRATLIVVP-SYLVDHWKTQIQ 633 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~-------s~~tLIVvP-~sLl~qW~~Ei~ 633 (1158)
++++|...+....... ...++.. ++|.|||..++..+. .+++||++| ..+..||..++.
T Consensus 9 ~~~~Q~~~~~~~~~~~---------~~~~i~~----~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 9 LRPYQKEAIEALLSGL---------RDVILAA----PTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCHHHHHHHHHHHcCC---------CcEEEEC----CCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHH
Confidence 5688887764443321 2344444 599999996666542 167999999 678899999999
Q ss_pred hhcCCCC-eEEEEecCCCC-cccccccCC-CCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHH
Q 001095 634 QHVRPGQ-LHLFVWTDHKK-PSAHSLAWD-YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ 710 (1158)
Q Consensus 634 k~~~~~~-l~v~v~~g~~~-~~~~~l~~~-~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~ 710 (1158)
+.++... ....++++... ......... ++++++||+.+........ +....++++|+||+|.+.+... .....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~-~~~~~ 151 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGF-GDQLE 151 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCc-HHHHH
Confidence 9886433 45555665442 222222223 4999999999987654322 4556788999999999996221 22222
Q ss_pred -HHHHc-ccCeEEEEeCCCCCCC
Q 001095 711 -MAISL-TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 711 -~~~~L-~a~~RwlLTGTPiqN~ 731 (1158)
.+..+ ...+++++||||..+.
T Consensus 152 ~~~~~~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 152 KLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHHhCCccceEEEEecCCchhH
Confidence 22333 5788999999998554
No 102
>PRK09401 reverse gyrase; Reviewed
Probab=99.01 E-value=1.7e-08 Score=132.52 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=72.2
Q ss_pred CeEEEEeccHHH---HHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEE----eCccccccCccc-CCE
Q 001095 992 DKVIIFSQFLEH---IHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLM----DGSASLGLDLSF-VTR 1063 (1158)
Q Consensus 992 ~KVLVFSqf~~~---ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~----s~agg~GLNLt~-An~ 1063 (1158)
.++|||++.... ++.|.+.|...|+++..++|++ .+.+++|.++ .+.|||+ |..++.|||+.. ..+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeE
Confidence 479999998666 9999999999999999999988 2346999877 5789999 468899999998 899
Q ss_pred EEEECCCC------CcChHHHHHhccc
Q 001095 1064 VFLMEPIW------DRSMEEQVISRAH 1084 (1158)
Q Consensus 1064 VI~~Dp~W------NP~~e~QAigRah 1084 (1158)
||||+.|= .......+++|.-
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHH
Confidence 99999986 3444556777765
No 103
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.00 E-value=7.2e-09 Score=119.24 Aligned_cols=130 Identities=19% Similarity=0.278 Sum_probs=109.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
+.+.|||++..+.+..|.-+|...+|+...++..|..++|-+.+++|.+.++ .|||+|++++.||+++...|||+|..|
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~-~VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS-GVLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC-eEEEeehhhhccCCCCCcceEEEeecC
Confidence 4589999999999999999999999999999999999999999999998765 689999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeC---------------------CCHHHHHHHHHHHhHHHHHHHHh
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMR---------------------GTVEEQMLEFLQDTDRCRRLLKE 1123 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~---------------------~TIEE~Il~~l~~K~~l~~~v~~ 1123 (1158)
-.-.....|-||.-|-+..- |.|. |+.+ --|++.|+..+.++-+++..+.+
T Consensus 542 rtseiYVHRSGRTARA~~~G-vsvm-l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~ 613 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANSEG-VSVM-LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDK 613 (731)
T ss_pred CccceeEecccccccccCCC-eEEE-EeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876432 3331 1111 14588899888888777766554
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=3.2e-08 Score=123.42 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=100.6
Q ss_pred ccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc-------
Q 001095 987 NKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS------- 1059 (1158)
Q Consensus 987 ~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt------- 1059 (1158)
....+..||||+.+....+.|...|.+.||++..++|.....+|+.+.+.|+.+. |+|+|..+|.|+++.
T Consensus 440 ~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~---VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 440 CGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA---VTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred HHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc---EEEeccCccCCcceecCCchhh
Confidence 3678999999999999999999999999999999999999999999999999873 999999999998865
Q ss_pred -------------------------------cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHH
Q 001095 1060 -------------------------------FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQML 1108 (1158)
Q Consensus 1060 -------------------------------~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il 1108 (1158)
+.=|||--+.+-|...+.|-.||++|-|..-....| + |+|+.++
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~-l----SleD~l~ 591 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY-L----SLEDNLM 591 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE-E----EcCcHHH
Confidence 234899999999999999999999999998875554 2 3455555
Q ss_pred HH
Q 001095 1109 EF 1110 (1158)
Q Consensus 1109 ~~ 1110 (1158)
.+
T Consensus 592 ~~ 593 (896)
T PRK13104 592 RI 593 (896)
T ss_pred HH
Confidence 44
No 105
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.99 E-value=2.1e-08 Score=121.63 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=85.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHC----CCe-EEEEeCCCCHHHHHHHHHHhcc-CCCeeEEEEeCccccccCcccCCEE
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVA----GIK-FAGMYSPMHSSNKIKSLDMFRH-DASCLALLMDGSASLGLDLSFVTRV 1064 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~----gi~-~~~ldG~t~~~~R~~~i~~F~~-~~~~~VLL~s~agg~GLNLt~An~V 1064 (1158)
-.|.|||+.-.++.+.|..+|... +-+ ...|+|.. ++-+..|+.|.. ..-++|.++++...+|+|...+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 479999999999999999999775 223 46678754 555678888876 4457788878999999999999999
Q ss_pred EEECCCCCcChHHHHHhccccc-------CCCC-cEEEEEEE
Q 001095 1065 FLMEPIWDRSMEEQVISRAHRM-------GATR-PIHVETLA 1098 (1158)
Q Consensus 1065 I~~Dp~WNP~~e~QAigRahRi-------GQ~k-~V~V~rLi 1098 (1158)
+|+-+.-+-....|-+||.-|+ ||.| ...|+.++
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999999996 4555 35555553
No 106
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.99 E-value=1.7e-08 Score=110.99 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=94.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
+...++||.|-+.+-++|...|+..++..+.+++.|+.++|..++.+|+++ ..++||+|++++.||+.....-||++|.
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~iliaTDVAsRGLDIP~V~LVvN~di 331 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILIATDVASRGLDIPTVELVVNHDI 331 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEEEechhhcCCCCCceeEEEecCC
Confidence 667899999999999999999999999999999999999999999999976 5799999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCC
Q 001095 1070 IWDRSMEEQVISRAHRMGATR 1090 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k 1090 (1158)
|-.|.....+.||.-|-|..-
T Consensus 332 Pr~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 332 PRDPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred CCCHHHHHHhhcchhcccCCc
Confidence 999999999999988888665
No 107
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.99 E-value=1.8e-08 Score=126.70 Aligned_cols=148 Identities=19% Similarity=0.142 Sum_probs=99.9
Q ss_pred CCCcEEeecccCCcccchHHHHHHHHhc------CCEEEEEC-cccHHHHHHHHHhhcCCCCeEEEEecCCCCccccccc
Q 001095 586 TLDNLAFDLAALRLALCEPLDSVRLYLS------RATLIVVP-SYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLA 658 (1158)
Q Consensus 586 ~~ggILaDelad~mGLGKTlqaiall~s------~~tLIVvP-~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~ 658 (1158)
+.|-|++- ..|.|||+.++-.+.+ ++.+-||| .+|..+=.+|+.+|-. -.++|.+++|.-......+.
T Consensus 47 ~~N~li~a----PTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~~~TgD~~~~~~~l~ 121 (766)
T COG1204 47 DENVLISA----PTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEE-LGIRVGISTGDYDLDDERLA 121 (766)
T ss_pred CCcEEEEc----CCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHh-cCCEEEEecCCcccchhhhc
Confidence 45556554 6999999988766542 59999999 5788888889884432 23999999987765554444
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCC-chHHH--HHHHHHHccc-CeEEEEeCCCCCCCccc
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSS-LNLTN--KLQMAISLTA-SNRWLLTGTPTPNTPNS 734 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~-~s~t~--~~~~~~~L~a-~~RwlLTGTPiqN~~~~ 734 (1158)
++||+||||+-+-+-.++... .....++||+||+|.+... ...+- ....++.... .+.+.||+|
T Consensus 122 -~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSAT-------- 189 (766)
T COG1204 122 -RYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSAT-------- 189 (766)
T ss_pred -cCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeee--------
Confidence 999999999987654332221 4446689999999999876 21111 1111222233 356779999
Q ss_pred hhhhhHHHhhhcCCCcC
Q 001095 735 QLSHLQPMLKFLHEEAY 751 (1158)
Q Consensus 735 ~l~dL~sLl~FL~p~~~ 751 (1158)
+.....+..||+..++
T Consensus 190 -lpN~~evA~wL~a~~~ 205 (766)
T COG1204 190 -LPNAEEVADWLNAKLV 205 (766)
T ss_pred -cCCHHHHHHHhCCccc
Confidence 4445566677777665
No 108
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.97 E-value=4.7e-08 Score=123.32 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=83.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
.|.+|-.-.+-.+.+.-+...|+.. ..++...+|.|+..+-++++..|.++ ...|||+|.-.-.||++..||++|+-
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~dVLv~TTIIEtGIDIPnANTiIIe 880 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EYDVLVCTTIIETGIDIPNANTIIIE 880 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CCCEEEEeeeeecCcCCCCCceEEEe
Confidence 3445545555556666666666654 44578889999999999999999876 67999999999999999999999997
Q ss_pred CCC-CCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1068 EPI-WDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1068 Dp~-WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
+-+ +--+..-|=-||++|-. +.-+-|-|+-.
T Consensus 881 ~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 881 RADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred ccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 655 55668889999999955 45677766664
No 109
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=98.96 E-value=1.6e-08 Score=115.57 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=93.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
+.||+||...-.+..++.+.|....+++..|+|..+...|.....+|.+... .||++|++++.|+|....+.||-||||
T Consensus 330 ~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes-gIL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 330 RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES-GILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhccc-ceEEecchhhccCCCCCceEEEEeCCC
Confidence 3899999999999999999999999999999999999999999999997754 689999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCc
Q 001095 1071 WDRSMEEQVISRAHRMGATRP 1091 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~ 1091 (1158)
-||.....|+||..|-|-+-.
T Consensus 409 ~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 409 SDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred CCHHHHHHHhccccccCCCce
Confidence 999999999999999886543
No 110
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.94 E-value=7e-08 Score=119.89 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=90.6
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc---cCC--
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS---FVT-- 1062 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt---~An-- 1062 (1158)
...+..||||+.+....+.|...|.+.|+++..++|.....++..+...|+.+ .|+|+|..+|.|+++. ...
T Consensus 437 ~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g---~VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 437 HAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG---AVTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc---eEEEEeccccCCCCCCCCcchhhh
Confidence 45789999999999999999999999999999999998766665566666544 3999999999999984 667
Q ss_pred ---EEEEECCCCCcChHHHHHhcccccCCCCcEEE
Q 001095 1063 ---RVFLMEPIWDRSMEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1063 ---~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V 1094 (1158)
|||.++.+-|...+.|++||+.|.|..-....
T Consensus 514 GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 514 GGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred CCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 99999999999999999999999999886544
No 111
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.93 E-value=3.2e-10 Score=129.01 Aligned_cols=67 Identities=40% Similarity=0.567 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHHHHhh-
Q 001095 170 HQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSLILKT- 248 (1158)
Q Consensus 170 yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~LalI~~~- 248 (1158)
||++|+.||+.||-. ...+......+|||||||||||||+++|+++...
T Consensus 1 ~Q~~~v~~m~~~~~~------------------------------~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~ 50 (299)
T PF00176_consen 1 HQLEAVRWMLDRELV------------------------------EEYPNSESPPRGGLLADEMGLGKTITAIALISYLK 50 (299)
T ss_dssp HHHHHHHHHHHHH----------------------------------TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhh------------------------------hcccccccCCCCEEEEECCCCCchhhhhhhhhhhh
Confidence 899999999998810 1112223345799999999999999999999731
Q ss_pred --------CCCcccCCccccccceec
Q 001095 249 --------QGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 249 --------~~~~~~~P~~~~~~W~~~ 266 (1158)
..+++++|.+++.+|..+
T Consensus 51 ~~~~~~~~~~~LIv~P~~l~~~W~~E 76 (299)
T PF00176_consen 51 NEFPQRGEKKTLIVVPSSLLSQWKEE 76 (299)
T ss_dssp HCCTTSS-S-EEEEE-TTTHHHHHHH
T ss_pred hccccccccceeEeeccchhhhhhhh
Confidence 148999999999999955
No 112
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.83 E-value=6.6e-07 Score=111.82 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=97.1
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS-------- 1059 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt-------- 1059 (1158)
...+..||||+......+.|...|.+.|+++..++|. ..+|++.|..|... ...|+|+|..+|.|+++.
T Consensus 427 ~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~-~g~VtIATNmAGRGtDI~LgGn~~~~ 503 (830)
T PRK12904 427 HKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR-PGAVTIATNMAGRGTDIKLGGNPEML 503 (830)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC-CceEEEecccccCCcCccCCCchhhh
Confidence 4578899999999999999999999999999999995 57899999999865 468999999888888755
Q ss_pred ------------------------------cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHH
Q 001095 1060 ------------------------------FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109 (1158)
Q Consensus 1060 ------------------------------~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~ 1109 (1158)
+.=|||.-+.+-|-..+.|..||+.|-|..-....| + |+|+.++.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~-l----SleD~l~~ 578 (830)
T PRK12904 504 AAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY-L----SLEDDLMR 578 (830)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE-E----EcCcHHHH
Confidence 246899999999999999999999999998876654 2 34445554
Q ss_pred H
Q 001095 1110 F 1110 (1158)
Q Consensus 1110 ~ 1110 (1158)
+
T Consensus 579 ~ 579 (830)
T PRK12904 579 I 579 (830)
T ss_pred h
Confidence 4
No 113
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.82 E-value=6e-10 Score=138.12 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHH
Q 001095 165 LKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSL 244 (1158)
Q Consensus 165 ~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~Lal 244 (1158)
.+||.||.+||+||+. +|. +.. -||||||||||||||+|++
T Consensus 369 ~~LRdyQLeGlNWl~~-----------~W~------------~~~----------------n~ILADEmgLgktvqti~f 409 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLY-----------SWY------------KRN----------------NCILADEMGLGKTVQTITF 409 (1373)
T ss_pred chhhhhhcccchhHHH-----------HHH------------hcc----------------cceehhhcCCCcchHHHHH
Confidence 5899999999999998 332 222 4899999999999999999
Q ss_pred HHh-------hCCCcccCCccccccceec---cCCCeeeeec
Q 001095 245 ILK-------TQGTLADPPDGVKIIWCTH---NGDPRCGYYD 276 (1158)
Q Consensus 245 I~~-------~~~~~~~~P~~~~~~W~~~---~~~~~~~yy~ 276 (1158)
+.. +.+-++|+|.+.+.+|.++ ...-.+.-|.
T Consensus 410 l~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~~mn~i~y~ 451 (1373)
T KOG0384|consen 410 LSYLFHSLQIHGPFLVVVPLSTITAWEREFETWTDMNVIVYH 451 (1373)
T ss_pred HHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHhhhceeeee
Confidence 863 3577899999999999965 2244455553
No 114
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.80 E-value=2.2e-07 Score=118.63 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=96.1
Q ss_pred CCCCeEEEEeccHHHHHHHH----HHHHHCC----CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCccc
Q 001095 989 ALPDKVIIFSQFLEHIHVIE----QQLTVAG----IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSF 1060 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~----~~L~~~g----i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~ 1060 (1158)
..+-|.|+|+-+...+..+. ..+...+ .......|++...+|..+...|+++ ...+++++-+.-.|+++..
T Consensus 304 ~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g-~~~~~~st~AlelgidiG~ 382 (851)
T COG1205 304 RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG-ELLGVIATNALELGIDIGS 382 (851)
T ss_pred HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC-CccEEecchhhhhceeehh
Confidence 46789999999999988886 4555555 5678889999999999999999987 5688888899999999999
Q ss_pred CCEEEEECCCC-CcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001095 1061 VTRVFLMEPIW-DRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110 (1158)
Q Consensus 1061 An~VI~~Dp~W-NP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~ 1110 (1158)
...||..--|- .-....|+.||++|-||.-.+.+ ..-.+-++..+...
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~--v~~~~~~d~yy~~~ 431 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV--VLRSDPLDSYYLRH 431 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEE--EeCCCccchhhhhC
Confidence 99999988777 55778899999999995543333 33377778777654
No 115
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.79 E-value=2e-09 Score=131.88 Aligned_cols=79 Identities=32% Similarity=0.549 Sum_probs=61.0
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCC
Q 001095 155 LAASIMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPG 234 (1158)
Q Consensus 155 ~~~~~~p~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMG 234 (1158)
......|.++..|+|||++|+.||.+ -+ +|.+ .| ....|+|+|||||
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~k--------------nl-------------~g~~---~~---~~~~GCImAd~~G 273 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYK--------------NL-------------AGLI---RP---KNSGGCIMADEPG 273 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHh--------------hh-------------hccc---cc---CCCCceEeeCCCC
Confidence 33456778999999999999999965 11 1110 01 2446899999999
Q ss_pred CchhHHHHHHHHhh-----------CCCcccCCccccccceec
Q 001095 235 LGKTITALSLILKT-----------QGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 235 LGKTl~~LalI~~~-----------~~~~~~~P~~~~~~W~~~ 266 (1158)
+|||+|+|+||.+. ..+++++|.+++.+|.++
T Consensus 274 lGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 274 LGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred cchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 99999999999852 346789999999999977
No 116
>PRK14701 reverse gyrase; Provisional
Probab=98.79 E-value=2.6e-07 Score=124.18 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=77.6
Q ss_pred CCeEEEEeccHHH---HHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeC----ccccccCccc-CC
Q 001095 991 PDKVIIFSQFLEH---IHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG----SASLGLDLSF-VT 1062 (1158)
Q Consensus 991 ~~KVLVFSqf~~~---ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~----agg~GLNLt~-An 1062 (1158)
+...|||++.... .+.+.+.|...|+++..++|. |.+++++|.++ .+.||++|. .++.|||+.. ..
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCCCCeeEecCccCCccC
Confidence 4689999987654 589999999999999999983 88999999977 578999994 6889999997 89
Q ss_pred EEEEECCCC---CcChHH-------------HHHhcccccCCC
Q 001095 1063 RVFLMEPIW---DRSMEE-------------QVISRAHRMGAT 1089 (1158)
Q Consensus 1063 ~VI~~Dp~W---NP~~e~-------------QAigRahRiGQ~ 1089 (1158)
+|||+|.|= +-..+. |.++|+.|-|..
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999999986 444444 455999999975
No 117
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.79 E-value=1.5e-07 Score=124.02 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=66.7
Q ss_pred CeEEEEeccH---HHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe----CccccccCccc-CCE
Q 001095 992 DKVIIFSQFL---EHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD----GSASLGLDLSF-VTR 1063 (1158)
Q Consensus 992 ~KVLVFSqf~---~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s----~agg~GLNLt~-An~ 1063 (1158)
.++|||.+.. ...+.|.+.|...|++...++|.++ ++.+++|.++ .+.|||+| ..++.|||+.. .++
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccccCcccccCCCCccccE
Confidence 5789999998 8999999999999999999999985 3789999877 57899995 78999999998 799
Q ss_pred EEEECCC
Q 001095 1064 VFLMEPI 1070 (1158)
Q Consensus 1064 VI~~Dp~ 1070 (1158)
|||||+|
T Consensus 402 vI~~~~P 408 (1171)
T TIGR01054 402 AVFLGVP 408 (1171)
T ss_pred EEEECCC
Confidence 9999997
No 118
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.78 E-value=1.7e-09 Score=122.70 Aligned_cols=167 Identities=21% Similarity=0.241 Sum_probs=98.4
Q ss_pred eeccccccccccCc-------------cch--hHhhhhccccccccccccccccCCcccccC-C----CCcccccCCccc
Q 001095 42 YLPIAAWSGWQFPK-------------SGA--IAGSLFRHVSCDWEKRKSVLLDGGECFKDG-C----DSSIWNISDCHV 101 (1158)
Q Consensus 42 ~~~~~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~ 101 (1158)
|+|.-.-|.|||-- +-+ .-..=|--+.|+-..|.-+. +...|++.+ + +..+.. .=.+
T Consensus 63 ~~P~~~~s~w~s~~n~ylk~aq~~~pdt~sl~~~~~~~vk~rc~~~~r~~~~-~~~sh~~l~d~~kq~d~r~yD--vkk~ 139 (689)
T KOG1000|consen 63 MKPTMNNSTWQSTINNYLKQAQKPEPDTSSLIKPTIGCVKLRCDIGDRIKIE-FYPSHSALIDLIKQVDSRNYD--VKKR 139 (689)
T ss_pred CCcccccccccccHHHHHHHhCCCCCCccccccCccceeEEEEEeccceeEE-ecCcHHHHHHHHhhcchhccc--cccc
Confidence 88999999898732 211 11112346678888888666 455566444 1 222221 2233
Q ss_pred cccccC--CCCC--cc-CCCCCCCCCCCCcHHHHHHHHhhcCCCcHHHHHHHhhhhhhcccccCCCcccCChHHHHHHHH
Q 001095 102 LDWKPD--SSRV--KP-EDNSCSTGISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAASIMPCMKLKLFPHQQAAVE 176 (1158)
Q Consensus 102 ~~c~~~--~~~~--~p-~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~p~l~~~L~~yQ~~~l~ 176 (1158)
-+|+.. .+.+ +| .--+....++++|..++ .+. .+.+.. ...++...-.|.|-..|+|||++||.
T Consensus 140 sw~~~~sd~v~v~~i~k~~~avkv~ld~lp~~~l-~~a-~~~~ea---------~~~~l~ev~d~kLvs~LlPFQreGv~ 208 (689)
T KOG1000|consen 140 SWTVASSDHVTVSNILKNATAVKVELDPLPQNIL-GLA-NFKPEA---------APSDLNEVMDPKLVSRLLPFQREGVI 208 (689)
T ss_pred eeEEecccceeeecchhhhhcceeeeccccccce-ehh-ccCCcc---------CHHHHhhccCHHHHHhhCchhhhhHH
Confidence 445422 1222 22 12222344455555442 121 111111 01112222234677789999999999
Q ss_pred HHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCc--eeccCCCCchhHHHHHHHHhhC---CC
Q 001095 177 WMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGG--MFCDEPGLGKTITALSLILKTQ---GT 251 (1158)
Q Consensus 177 Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GG--ILaDeMGLGKTl~~LalI~~~~---~~ 251 (1158)
|-+. +|| +||||||||||||+||....-+ +-
T Consensus 209 faL~--------------------------------------------RgGR~llADeMGLGKTiQAlaIA~yyraEwpl 244 (689)
T KOG1000|consen 209 FALE--------------------------------------------RGGRILLADEMGLGKTIQALAIARYYRAEWPL 244 (689)
T ss_pred HHHh--------------------------------------------cCCeEEEecccccchHHHHHHHHHHHhhcCcE
Confidence 9887 466 9999999999999999766544 56
Q ss_pred cccCCccccccceec
Q 001095 252 LADPPDGVKIIWCTH 266 (1158)
Q Consensus 252 ~~~~P~~~~~~W~~~ 266 (1158)
+++||.+|...|..+
T Consensus 245 liVcPAsvrftWa~a 259 (689)
T KOG1000|consen 245 LIVCPASVRFTWAKA 259 (689)
T ss_pred EEEecHHHhHHHHHH
Confidence 789999999999954
No 119
>PRK09694 helicase Cas3; Provisional
Probab=98.77 E-value=3.1e-07 Score=116.98 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=80.1
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHCC---CeEEEEeCCCCHHHH----HHHHHHhc-cCCC--eeEEEEeCccccccCc
Q 001095 989 ALPDKVIIFSQFLEHIHVIEQQLTVAG---IKFAGMYSPMHSSNK----IKSLDMFR-HDAS--CLALLMDGSASLGLDL 1058 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~g---i~~~~ldG~t~~~~R----~~~i~~F~-~~~~--~~VLL~s~agg~GLNL 1058 (1158)
..+.+++||++..+....+.+.|++.+ +++..++|+++..+| +++++.|. ++.. ..|||+|.+...|||+
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 367899999999999999999999765 678999999999888 46788994 3322 5799999999999999
Q ss_pred ccCCEEEEECCCCCcChHHHHHhcccccCCC
Q 001095 1059 SFVTRVFLMEPIWDRSMEEQVISRAHRMGAT 1089 (1158)
Q Consensus 1059 t~An~VI~~Dp~WNP~~e~QAigRahRiGQ~ 1089 (1158)
. ++.+|....+ .....|++||+||.|..
T Consensus 638 d-~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 D-FDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred C-CCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 5 6777764333 34789999999999974
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.77 E-value=2.9e-06 Score=106.49 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=96.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCccc---CC--
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSF---VT-- 1062 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~---An-- 1062 (1158)
...+..||||+.+....+.|...|...||++..|++ ...+|++.|..|... ...|+|+|..+|.|+++.- +.
T Consensus 595 ~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~-~g~VtIATNMAGRGtDIkl~~~V~~v 671 (1025)
T PRK12900 595 QKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ-KGAVTIATNMAGRGTDIKLGEGVREL 671 (1025)
T ss_pred hhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC-CCeEEEeccCcCCCCCcCCccchhhh
Confidence 457899999999999999999999999999999997 467899999999865 4589999999999999883 32
Q ss_pred ---EEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001095 1063 ---RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111 (1158)
Q Consensus 1063 ---~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l 1111 (1158)
|||..+.+-+...+.|++||+.|.|..-....| + |.|+.++.+.
T Consensus 672 GGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff--v---SleD~Lmr~f 718 (1025)
T PRK12900 672 GGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY--V---SLEDELMRLF 718 (1025)
T ss_pred CCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE--e---chhHHHHHhh
Confidence 458889999999999999999999988765332 3 4455565443
No 121
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=98.74 E-value=2e-07 Score=105.23 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=92.8
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeC---------------------
Q 001095 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG--------------------- 1050 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~--------------------- 1050 (1158)
.|.|||.+-.+.--.+.-+|+..||+.+.++|.+|...|.-+|++||.+ ...++|+|+
T Consensus 269 gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~YdivIAtD~s~~~~~~eee~kgk~~e~~~ 347 (569)
T KOG0346|consen 269 GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDIVIATDDSADGDKLEEEVKGKSDEKNP 347 (569)
T ss_pred CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeEEEEccCccchhhhhccccccccccCC
Confidence 5899999999998889999999999999999999999999999999976 567777775
Q ss_pred -----c---------cccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1051 -----S---------ASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1051 -----a---------gg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
+ .+.||+++..+.||+||.|-++.....|+||..|-|.+-.+ ..|+...
T Consensus 348 kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta--lSfv~P~ 410 (569)
T KOG0346|consen 348 KNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA--LSFVSPK 410 (569)
T ss_pred CCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce--EEEecch
Confidence 1 14699999999999999999999999999999998866654 4456554
No 122
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=1.2e-06 Score=109.23 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=99.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS-------- 1059 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt-------- 1059 (1158)
...|..||||+......+.+...|...|+++..+++..+..+|..+.+.|+.+. |+|+|..+|.|+++.
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~---VtIATnmAGRGTDIkLggn~~~~ 522 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA---VTIATNMAGRGTDIVLGGNWNME 522 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc---EEEecCCcCCCcceecCCchHHh
Confidence 568999999999999999999999999999999999999999999999999775 999999999998865
Q ss_pred -----------------------------cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001095 1060 -----------------------------FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110 (1158)
Q Consensus 1060 -----------------------------~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~ 1110 (1158)
+.=|||.-+.+-|-..+.|..||+.|-|..-.-..| + |+|+.++.+
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~-l----SlED~L~r~ 597 (908)
T PRK13107 523 IEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY-L----SMEDSLMRI 597 (908)
T ss_pred hhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE-E----EeCcHHHHH
Confidence 334899999999999999999999999998865443 2 345555544
No 123
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=2.3e-06 Score=105.76 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=98.7
Q ss_pred ccccCCCcEEeecccCCcccchHHHHHHHHhc---------------CCEEEEEC-cccHHHHHHHHHhhcCCCCeEEEE
Q 001095 582 YYPKTLDNLAFDLAALRLALCEPLDSVRLYLS---------------RATLIVVP-SYLVDHWKTQIQQHVRPGQLHLFV 645 (1158)
Q Consensus 582 l~~~~~ggILaDelad~mGLGKTlqaiall~s---------------~~tLIVvP-~sLl~qW~~Ei~k~~~~~~l~v~v 645 (1158)
-|..+-+.|++- ..|.|||..++-.++. -.+.-|+| ++|...-.+-+.+.+.+-.++|..
T Consensus 122 aY~SneNMLIcA----PTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~E 197 (1230)
T KOG0952|consen 122 AYKSNENMLICA----PTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRE 197 (1230)
T ss_pred hhcCCCCEEEEC----CCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEE
Confidence 345566777776 4999999766443321 37899999 466654444445555444589999
Q ss_pred ecCCCCcccccccCCCCEEEeech---hhhhhhhcCCCCCcccccceEEEEccccccCCCchHHH---HHHHH----HHc
Q 001095 646 WTDHKKPSAHSLAWDYDVVITTFN---RLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTN---KLQMA----ISL 715 (1158)
Q Consensus 646 ~~g~~~~~~~~l~~~~DVVItTY~---~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~---~~~~~----~~L 715 (1158)
++|+......+. .+.||+|||-+ .+++... ....| .-.-.+||+||.|.|.......- .++.. ...
T Consensus 198 LTGD~ql~~tei-~~tqiiVTTPEKwDvvTRk~~--~d~~l-~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessq 273 (1230)
T KOG0952|consen 198 LTGDTQLTKTEI-ADTQIIVTTPEKWDVVTRKSV--GDSAL-FSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQ 273 (1230)
T ss_pred ecCcchhhHHHH-HhcCEEEecccceeeeeeeec--cchhh-hhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhh
Confidence 999877665553 48999999955 4442211 00111 22346899999999986542111 11111 123
Q ss_pred ccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCCchHHHhhhc
Q 001095 716 TASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGI 762 (1158)
Q Consensus 716 ~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~ 762 (1158)
..-+-+.|||| +-.+-.+..||+..++.. .-+|...|
T Consensus 274 s~IRivgLSAT---------lPN~eDvA~fL~vn~~~g-lfsFd~~y 310 (1230)
T KOG0952|consen 274 SMIRIVGLSAT---------LPNYEDVARFLRVNPYAG-LFSFDQRY 310 (1230)
T ss_pred hheEEEEeecc---------CCCHHHHHHHhcCCCccc-eeeecccc
Confidence 44566789999 334556778888876552 34444443
No 124
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.64 E-value=8.6e-08 Score=106.02 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=105.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
....-+||||++-..-.|-|.++|--.|+..+.|+|+...++|..+|+.|+.+. ..||+.|++++-||+++...|||+|
T Consensus 418 QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk-KDVLVATDVASKGLDFp~iqHVINy 496 (610)
T KOG0341|consen 418 QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK-KDVLVATDVASKGLDFPDIQHVINY 496 (610)
T ss_pred ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC-CceEEEecchhccCCCccchhhccC
Confidence 446679999999999999999999999999999999999999999999999874 4899999999999999999999999
Q ss_pred CCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHH
Q 001095 1068 EPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEF 1110 (1158)
Q Consensus 1068 Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~ 1110 (1158)
|.+-.-.+...+|||.+|-|.+-- -..|+-+++-|.-++++
T Consensus 497 DMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlDL 537 (610)
T KOG0341|consen 497 DMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLDL 537 (610)
T ss_pred CChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHHH
Confidence 999888889999999999997763 33467777766555543
No 125
>COG4889 Predicted helicase [General function prediction only]
Probab=98.64 E-value=2.8e-07 Score=110.70 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=67.3
Q ss_pred ccHHHHHHHHHHHHHC----CCeEEEEeCCCCHHHHHHHHHHhcc--CCCeeEEEEeCccccccCcccCCEEEEECCCCC
Q 001095 999 QFLEHIHVIEQQLTVA----GIKFAGMYSPMHSSNKIKSLDMFRH--DASCLALLMDGSASLGLDLSFVTRVFLMEPIWD 1072 (1158)
Q Consensus 999 qf~~~ld~L~~~L~~~----gi~~~~ldG~t~~~~R~~~i~~F~~--~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WN 1072 (1158)
+|..+++...+.|.+. .+..--+||+|+..+|.....-=+. ...|+||---++.++|++..+-+-|||+||--.
T Consensus 479 sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~s 558 (1518)
T COG4889 479 SFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSS 558 (1518)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchh
Confidence 4566655555555443 3445568999999999655443322 235777644489999999999999999999877
Q ss_pred cChHHHHHhcccccCCCC
Q 001095 1073 RSMEEQVISRAHRMGATR 1090 (1158)
Q Consensus 1073 P~~e~QAigRahRiGQ~k 1090 (1158)
-....||+||+-|.---|
T Consensus 559 mVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 559 MVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 778899999999976555
No 126
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.59 E-value=3.4e-06 Score=109.98 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=88.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCe---EEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIK---FAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL 1066 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~---~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~ 1066 (1158)
+..++|||......++.+.+.|...+++ +..++|+++.++|.++++. ....+|+|+|..+..||++...++||.
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeEEEeccHHhhccccCcceEEEE
Confidence 4468999999999999999999998775 5678999999999988665 346799999999999999999999998
Q ss_pred EC---------------CCCCc---ChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1067 ME---------------PIWDR---SMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1067 ~D---------------p~WNP---~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
++ ++-.| +...||.||++|. ++=..|+|+++...+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 74 23333 3566777777777 466788999876543
No 127
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.56 E-value=4.6e-07 Score=100.47 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=94.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCC
Q 001095 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIW 1071 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~W 1071 (1158)
...|||++-..+...|...|.+.|..+..++|.+...+|.+++++|+.+. .+|||.|.+.+.|++.+..+.||+||++-
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~-~kVLitTnV~ARGiDv~qVs~VvNydlP~ 409 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGK-EKVLITTNVCARGIDVAQVSVVVNYDLPV 409 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCc-ceEEEEechhhcccccceEEEEEecCCcc
Confidence 46799999999999999999999999999999999999999999999874 58999999999999999999999999985
Q ss_pred C------cChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1072 D------RSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1072 N------P~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
. +.....||||.+|.|.+- .++.|+-.
T Consensus 410 ~~~~~pD~etYlHRiGRtGRFGkkG--~a~n~v~~ 442 (477)
T KOG0332|consen 410 KYTGEPDYETYLHRIGRTGRFGKKG--LAINLVDD 442 (477)
T ss_pred ccCCCCCHHHHHHHhcccccccccc--eEEEeecc
Confidence 3 557899999999999655 33445543
No 128
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.55 E-value=9e-06 Score=94.72 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=97.9
Q ss_pred CeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----E
Q 001095 992 DKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----M 1067 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~ 1067 (1158)
...|||+....--+.|..+|...|++..-++++++..+|..+-..|.+. ...+.+.|.|.|.|+++.+. .||| |
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q-~l~~VVTTAAL~AGVDFPAS-QVIFEsLaM 518 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ-ELAAVVTTAALAAGVDFPAS-QVIFESLAM 518 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC-CcceEeehhhhhcCCCCchH-HHHHHHHHc
Confidence 5789999999999999999999999999999999999999999999876 46677788899999999854 4544 3
Q ss_pred C-CCCCcChHHHHHhcccccCCCCcEEEEEEEeC---------CCHHHHHHHHHH
Q 001095 1068 E-PIWDRSMEEQVISRAHRMGATRPIHVETLAMR---------GTVEEQMLEFLQ 1112 (1158)
Q Consensus 1068 D-p~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~---------~TIEE~Il~~l~ 1112 (1158)
- -|.+|.-.+|..|||+|.|-...-.||-++-. +|=||--+.+++
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~ 573 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLE 573 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhc
Confidence 2 35688899999999999997766666666543 576766666654
No 129
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.54 E-value=3.9e-06 Score=109.80 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=88.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCC---CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAG---IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~g---i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
..++|||..-...++.+.+.|.+.+ +.+..++|+++.++|.++++. .+..+|+|+|..+..||++....+||-+
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~---~~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQP---HSGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCC---CCCceEEEeccHHHhccccCCeeEEEeC
Confidence 4689999999999999999998874 457889999999999988544 3446899999999999999999999987
Q ss_pred CCC----CCc--------------ChHHHHHhcccccCCCCcEEEEEEEeCCCHHH
Q 001095 1068 EPI----WDR--------------SMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105 (1158)
Q Consensus 1068 Dp~----WNP--------------~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE 1105 (1158)
+.. +|| +...||.||++|.| +-.+|+|+++...+.
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 632 222 36689999999987 667899998765443
No 130
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.51 E-value=1e-06 Score=94.52 Aligned_cols=151 Identities=15% Similarity=0.044 Sum_probs=96.7
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHH----Hhc------CCEEEEECc-ccHHHHHH
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRL----YLS------RATLIVVPS-YLVDHWKT 630 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaial----l~s------~~tLIVvP~-sLl~qW~~ 630 (1158)
+.++|...+..... +.+.++.- ..|.|||+..+.. +.. ..+|||+|. .|+.|+..
T Consensus 22 ~~~~Q~~~~~~~~~----------~~~~li~~----~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~ 87 (203)
T cd00268 22 PTPIQARAIPPLLS----------GRDVIGQA----QTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAE 87 (203)
T ss_pred CCHHHHHHHHHHhc----------CCcEEEEC----CCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHH
Confidence 45678777644332 23344443 5899999874332 222 269999996 58899999
Q ss_pred HHHhhcCCCCeEEEEecCCCCcc--cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHH
Q 001095 631 QIQQHVRPGQLHLFVWTDHKKPS--AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK 708 (1158)
Q Consensus 631 Ei~k~~~~~~l~v~v~~g~~~~~--~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~ 708 (1158)
.+.++.....+.+..++|..... ......+.+|+|+|.+.+...+.... +.--.++++|+||+|.+.+.......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~~~~~~~~~~~ 164 (203)
T cd00268 88 VARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEADRMLDMGFEDQI 164 (203)
T ss_pred HHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChHHhhccChHHHH
Confidence 99998765567777777654422 22233478999999888765543222 33345688999999998754322222
Q ss_pred HHHHHHcc-cCeEEEEeCCCCC
Q 001095 709 LQMAISLT-ASNRWLLTGTPTP 729 (1158)
Q Consensus 709 ~~~~~~L~-a~~RwlLTGTPiq 729 (1158)
......+. ....+++|+||-.
T Consensus 165 ~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 165 REILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred HHHHHhCCcccEEEEEeccCCH
Confidence 22333344 4668999999983
No 131
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.43 E-value=3.1e-05 Score=90.12 Aligned_cols=122 Identities=17% Similarity=0.131 Sum_probs=102.4
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
...++|+||-+--..|.+-|.++|.+.||++..++.....-+|.++|.....+ .+.||+.---.-+||+|..++-|.++
T Consensus 443 ~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G-~~DvLVGINLLREGLDiPEVsLVAIl 521 (663)
T COG0556 443 VAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLPEVSLVAIL 521 (663)
T ss_pred HhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC-CccEEEeehhhhccCCCcceeEEEEe
Confidence 56789999999999999999999999999999999999999999999999876 68899987788999999999999999
Q ss_pred CCC-----CCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001095 1068 EPI-----WDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111 (1158)
Q Consensus 1068 Dp~-----WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l 1111 (1158)
|-+ -+-....|-||||-|--.- .|..|-=-+.+++++.|-+..
T Consensus 522 DADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~ 569 (663)
T COG0556 522 DADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETE 569 (663)
T ss_pred ecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHH
Confidence 987 4566889999999994322 355554445556666665543
No 132
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.41 E-value=3.9e-06 Score=104.61 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=96.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP 1069 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp 1069 (1158)
.+.++|||++-..-++.+.+.|.+.|+.+..++|..+..+|...|+.|+++ .+.+||+|...+.||+...-..||+||.
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~LLvaTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVNLLVATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-CceEEEehhhhhcccccccceEEEEccc
Confidence 378999999999999999999999999999999999999999999999977 5789999999999999999999999999
Q ss_pred CCCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1070 IWDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1070 ~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
+=-......|.||..|-|-+- .-|.|+..
T Consensus 691 pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 691 PNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred chhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 776667888888888888776 55556666
No 133
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.39 E-value=1.1e-06 Score=90.99 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=88.5
Q ss_pred CcccchHHHHHHHHh----c---CCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCCcc--c-ccccCCCCEEEe
Q 001095 598 RLALCEPLDSVRLYL----S---RATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKKPS--A-HSLAWDYDVVIT 666 (1158)
Q Consensus 598 ~mGLGKTlqaiall~----s---~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~--~-~~l~~~~DVVIt 666 (1158)
..|.|||...+-.+. . +.+||++|. .++.|=.+++.+++....+++..+++..... . ..+..+.+|+|+
T Consensus 22 ptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~ 101 (169)
T PF00270_consen 22 PTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVT 101 (169)
T ss_dssp STTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEE
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 599999987764332 2 389999995 5889999999999876556777776654422 1 122347999999
Q ss_pred echhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHH-HHHc---ccCeEEEEeCCCCCCC
Q 001095 667 TFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQM-AISL---TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 667 TY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~-~~~L---~a~~RwlLTGTPiqN~ 731 (1158)
|++.+......... .+ ...++||+||+|.+.... ....... ...+ .....+++||||. .+
T Consensus 102 T~~~l~~~~~~~~~-~~--~~~~~iViDE~h~l~~~~-~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~ 165 (169)
T PF00270_consen 102 TPEQLLDLISNGKI-NI--SRLSLIVIDEAHHLSDET-FRAMLKSILRRLKRFKNIQIILLSATLP-SN 165 (169)
T ss_dssp EHHHHHHHHHTTSS-TG--TTESEEEEETHHHHHHTT-HHHHHHHHHHHSHTTTTSEEEEEESSST-HH
T ss_pred Ccchhhcccccccc-cc--ccceeeccCccccccccc-HHHHHHHHHHHhcCCCCCcEEEEeeCCC-hh
Confidence 99999877654222 33 337889999999998642 1222222 2222 3466899999998 54
No 134
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.37 E-value=4.5e-05 Score=93.58 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=91.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS-------- 1059 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt-------- 1059 (1158)
...|.-|||.+.....-+.|...|.+.||++-.++... .++-..+|.+= +..-.|-|+|-.+|.|.++.
T Consensus 424 ~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~-~~~EA~IIa~A--G~~gaVTIATNMAGRGTDIkLg~~~~~~ 500 (764)
T PRK12326 424 HETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN-DAEEARIIAEA--GKYGAVTVSTQMAGRGTDIRLGGSDEAD 500 (764)
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc-hHhHHHHHHhc--CCCCcEEEEecCCCCccCeecCCCcccc
Confidence 56899999999999999999999999999999998763 34445566654 33345888997777776655
Q ss_pred -------cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001095 1060 -------FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1060 -------~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
+.=|||--+.+-|...+.|..||+.|-|+.-....| + |+|+.++.+-.
T Consensus 501 ~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~-l----SleDdl~~~f~ 555 (764)
T PRK12326 501 RDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF-V----SLEDDVVAANL 555 (764)
T ss_pred hHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE-E----EcchhHHHhcC
Confidence 345999999999999999999999999998875554 2 44556654443
No 135
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.34 E-value=4.1e-06 Score=105.22 Aligned_cols=109 Identities=19% Similarity=0.137 Sum_probs=94.9
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
...+.++|||+......+.|.+.|...|+++..++|.++..+|..+++.|..+ .+.|++++...+.|+++..++.||++
T Consensus 443 ~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L~rGfdlp~v~lVii~ 521 (652)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDIPEVSLVAIL 521 (652)
T ss_pred HhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEEEeCHHhCCccccCCcEEEEe
Confidence 45789999999999999999999999999999999999999999999999865 57889999999999999999999999
Q ss_pred CCC-----CCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1068 EPI-----WDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1068 Dp~-----WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
|.+ -++....|++||+.|- . .=.++.|+..
T Consensus 522 d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 522 DADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred CCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 963 4777899999999994 3 2345555553
No 136
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.32 E-value=3.4e-06 Score=105.30 Aligned_cols=111 Identities=21% Similarity=0.164 Sum_probs=95.6
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
...+.++|||+......+.|.+.|...|+++..++|.++..+|.++++.|..+ .+.|++++...+.|+++..++.||++
T Consensus 439 ~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDiP~v~lVvi~ 517 (655)
T TIGR00631 439 VARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLPEVSLVAIL 517 (655)
T ss_pred HcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeeeCCCcEEEEe
Confidence 45789999999999999999999999999999999999999999999999866 57899999999999999999999999
Q ss_pred CC-----CCCcChHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001095 1068 EP-----IWDRSMEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1068 Dp-----~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
|. +=+.....|++||+.|.. .. .|+.++...|
T Consensus 518 DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~ 554 (655)
T TIGR00631 518 DADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKIT 554 (655)
T ss_pred CcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCC
Confidence 94 446678899999999973 22 3444555443
No 137
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.31 E-value=3.8e-06 Score=107.03 Aligned_cols=109 Identities=14% Similarity=0.008 Sum_probs=101.2
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
..++.-.|||+......+.+...|...|++...++.+++..+|+.+-+.|..+. ++|.++|-|-|.|||-....-||+|
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~-~~VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK-IRVIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC-CeEEEEEeeccCCCCCCceeEEEEC
Confidence 446778899999999999999999999999999999999999999999999885 8999999999999999999999999
Q ss_pred CCCCCcChHHHHHhcccccCCCCcEEEEEE
Q 001095 1068 EPIWDRSMEEQVISRAHRMGATRPIHVETL 1097 (1158)
Q Consensus 1068 Dp~WNP~~e~QAigRahRiGQ~k~V~V~rL 1097 (1158)
..|=+-.-.-|-+|||+|.|+...++.|+=
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecc
Confidence 999888889999999999999988777643
No 138
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.31 E-value=1.5e-07 Score=123.27 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=54.9
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001095 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
.+..+|+|||.+|++||... ++ ....|||||||||||||+|+
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~----------------------l~----------------~~~~~~ilaD~mglGKTiq~ 375 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSEL----------------------LR----------------SNLLGGILADDMGLGKTVQT 375 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHH----------------------HH----------------hccCCCcccccccchhHHHH
Confidence 56678999999999999730 00 11249999999999999999
Q ss_pred HHHHHh--------hCCCcccCCccccccceec
Q 001095 242 LSLILK--------TQGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 242 LalI~~--------~~~~~~~~P~~~~~~W~~~ 266 (1158)
|+++.. ..+.++++|.+++.+|..+
T Consensus 376 i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e 408 (866)
T COG0553 376 IALLLSLLESIKVYLGPALIVVPASLLSNWKRE 408 (866)
T ss_pred HHHHHhhhhcccCCCCCeEEEecHHHHHHHHHH
Confidence 999975 3477889999999999965
No 139
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.29 E-value=7.2e-08 Score=116.26 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=55.2
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001095 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
+|-..|+|||..||+||... +++.+.. +... .-.|||||--||||||+|+
T Consensus 664 slv~kLKpHQv~GvqFMwd~----------~~eSlkr---------------~~~~-----~GsGcILAHcMGLGKTlQV 713 (1567)
T KOG1015|consen 664 SLVIKLKPHQVDGVQFMWDC----------CCESLKR---------------TKKS-----PGSGCILAHCMGLGKTLQV 713 (1567)
T ss_pred hHHhhcCcccccchhHHHHH----------HHHHHHh---------------hcCC-----CCcchHHHHhhcccceehh
Confidence 56779999999999999651 0111000 0111 2259999999999999999
Q ss_pred HHHHHh--------hCCCcccCCccccccceec
Q 001095 242 LSLILK--------TQGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 242 LalI~~--------~~~~~~~~P~~~~~~W~~~ 266 (1158)
++|+-+ -...|+|+|..++.||.++
T Consensus 714 vtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 714 VTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 999753 2467899999999999965
No 140
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.24 E-value=4.9e-07 Score=115.93 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=52.1
Q ss_pred CcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHH
Q 001095 162 CMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITA 241 (1158)
Q Consensus 162 ~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~ 241 (1158)
+.+..|+|||...+.+++.|.. ..-+|||||||||||++
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~~-----------------------------------------~R~LLADEvGLGKTIeA 186 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRHA-----------------------------------------PRVLLADEVGLGKTIEA 186 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhccC-----------------------------------------CCEEEEeCCcCcHHHHH
Confidence 5788999999999988766321 14599999999999999
Q ss_pred HHHHHh------hCCCcccCCccccccceec
Q 001095 242 LSLILK------TQGTLADPPDGVKIIWCTH 266 (1158)
Q Consensus 242 LalI~~------~~~~~~~~P~~~~~~W~~~ 266 (1158)
++++.. .++.+++||.+++.||..+
T Consensus 187 glil~~l~~~g~~~rvLIVvP~sL~~QW~~E 217 (956)
T PRK04914 187 GMIIHQQLLTGRAERVLILVPETLQHQWLVE 217 (956)
T ss_pred HHHHHHHHHcCCCCcEEEEcCHHHHHHHHHH
Confidence 887742 2478899999999999865
No 141
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.22 E-value=3.4e-05 Score=98.45 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=100.3
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhc---cCCCeeEEEEeCccccccCcccCCEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFR---HDASCLALLMDGSASLGLDLSFVTRV 1064 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~---~~~~~~VLL~s~agg~GLNLt~An~V 1064 (1158)
...+.||+|-.+-.....-+.+.|+..+.+++.+++.+...+|.+.++... +.....|+|+|++.-+|+|+. .+.+
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~m 515 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVL 515 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCee
Confidence 457789999999999999999999998888999999999999998888655 345678999999999999998 4444
Q ss_pred EEECCCCCcC-hHHHHHhcccccC--CCCcEEEEEEEeCCCHHHHHHHHHHHhH
Q 001095 1065 FLMEPIWDRS-MEEQVISRAHRMG--ATRPIHVETLAMRGTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1065 I~~Dp~WNP~-~e~QAigRahRiG--Q~k~V~V~rLi~~~TIEE~Il~~l~~K~ 1115 (1158)
| -|+ .|. ...||.||++|.| ....++||...-....+.+.++....+.
T Consensus 516 I-Te~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 566 (733)
T COG1203 516 I-TEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKL 566 (733)
T ss_pred e-ecC--CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhh
Confidence 4 333 444 6789999999999 5668888888777777777776665554
No 142
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=5.5e-06 Score=93.00 Aligned_cols=114 Identities=16% Similarity=0.208 Sum_probs=101.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
-...+||.+...-++.|...|..+|+....++|.+...+|..+++.|+.+. .+|||.|...+.|++++..+-||.||.|
T Consensus 263 ~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs-srvlIttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 263 VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS-SRVLITTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC-ceEEeeccccccccchhhcceeeeeccc
Confidence 367899999999999999999999999999999999999999999999874 5999999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHH
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~ 1109 (1158)
=|......++||..|+|- +-.+..++++. |++++.
T Consensus 342 ~~~~~yihR~gr~gr~gr--kg~~in~v~~~--d~~~lk 376 (397)
T KOG0327|consen 342 ARKENYIHRIGRAGRFGR--KGVAINFVTEE--DVRDLK 376 (397)
T ss_pred cchhhhhhhcccccccCC--CceeeeeehHh--hHHHHH
Confidence 999999999999999994 44555677776 344544
No 143
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.16 E-value=4e-06 Score=92.84 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=75.1
Q ss_pred HHHHHhccCCCeeEEEEeCccccccCcccC-------CEE-EEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001095 1032 KSLDMFRHDASCLALLMDGSASLGLDLSFV-------TRV-FLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1032 ~~i~~F~~~~~~~VLL~s~agg~GLNLt~A-------n~V-I~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
...+.|+++. ..|+|.|.||++|+.|++- .+| |.++++|+.....|-.||+||-||..+..+..+++.-..
T Consensus 52 ~e~~~F~~g~-k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHhCCC-ceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 5678999885 6888889999999999953 234 678999999999999999999999997655566677788
Q ss_pred HHHHHHHHHHhHHHHHHHHhhh
Q 001095 1104 EEQMLEFLQDTDRCRRLLKEEL 1125 (1158)
Q Consensus 1104 EE~Il~~l~~K~~l~~~v~~~~ 1125 (1158)
|.+....+.+|+....++..+-
T Consensus 131 E~Rfas~va~rL~sLgAlt~gd 152 (278)
T PF13871_consen 131 ERRFASTVARRLESLGALTRGD 152 (278)
T ss_pred HHHHHHHHHHHHhhccccccCc
Confidence 9999999999885544444433
No 144
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.16 E-value=2.8e-05 Score=86.49 Aligned_cols=237 Identities=12% Similarity=0.109 Sum_probs=129.5
Q ss_pred CcccchhhHHhhhHHHHhhccccccccc-CCCcEEeecccCCcccchHHHHHHHHhc------CCEEEEEC-cccHHHHH
Q 001095 558 TQGFHKIFQAFGLIRRVEKGITRWYYPK-TLDNLAFDLAALRLALCEPLDSVRLYLS------RATLIVVP-SYLVDHWK 629 (1158)
Q Consensus 558 ~~~~~~~~Q~~Gl~~~~e~~~~~~l~~~-~~ggILaDelad~mGLGKTlqaiall~s------~~tLIVvP-~sLl~qW~ 629 (1158)
..+.+...|.+.+.-..+..-. ..|. .+.|.+ +||++|.||..|.-+++.. ++.+.|.. ..|..-=.
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~--~Lp~~~R~Gf~---lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQ--ILPGGSRAGFF---LGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHh--hcccccCcEEE---eccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHH
Confidence 3556778899998554433211 1122 223332 4558999999998888752 34666655 45665544
Q ss_pred HHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhc--CCCCCcccc-cc------eEEEEccccccC
Q 001095 630 TQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGR--RKKSPMMQV-HW------LRVMLDEGHTLG 700 (1158)
Q Consensus 630 ~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~--~~~~~L~~~-~w------~rVIlDEAH~ik 700 (1158)
+.+..- +...+.+.....-+..... ..+.+|+.+||++|..+... ...+.|.++ .| .+||+||+|..|
T Consensus 109 RDl~DI-G~~~i~v~~l~~~~~~~~~--~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 109 RDLRDI-GADNIPVHPLNKFKYGDII--RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HHHHHh-CCCcccceechhhccCcCC--CCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 455543 3333444443332221111 12678999999999987532 233444432 33 478999999999
Q ss_pred CCch----HHHHHHHHH----HcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCC-----chHHHhhhccCcch
Q 001095 701 SSLN----LTNKLQMAI----SLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQ-----NQKAWDGGILRPFE 767 (1158)
Q Consensus 701 n~~s----~t~~~~~~~----~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~-----~~~~f~~~~~~p~~ 767 (1158)
|..+ .++...+.. .|..-+.+-.|+|...+- .+|- + .-+.++||. +...|.+. ++
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep-----~Nma-Y--m~RLGLWG~gtpf~~~~~f~~a----~~ 253 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP-----RNMA-Y--MSRLGLWGPGTPFPDFDDFLEA----ME 253 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC-----ceee-e--eeeccccCCCCCCCCHHHHHHH----HH
Confidence 9754 123333333 344446788999998653 3331 1 223344431 13333332 23
Q ss_pred hhhHHHHHHHHHHH--HhHHhhhcccccccCCCceEEEEEecCCHHHHHHHHH
Q 001095 768 AEMEEGRSRLLQLL--HRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNE 818 (1158)
Q Consensus 768 ~~~~~~~~~L~~lL--~~~mlRR~K~dv~~LPpk~e~vv~v~lS~~q~~~Y~~ 818 (1158)
++.....+.+..-| ...+++|. .++-.....++.+++++++.++|+.
T Consensus 254 ~gGv~amE~vA~dlKa~G~yiaR~----LSf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 254 KGGVGAMEMVAMDLKARGMYIARQ----LSFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred hcCchHHHHHHHHHHhcchheeee----cccCCceEEEEEecCCHHHHHHhcC
Confidence 33222222222211 12233332 2344567888999999999999974
No 145
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.13 E-value=0.001 Score=84.04 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=89.1
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS-------- 1059 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt-------- 1059 (1158)
...+.-|||-+.+...-+.|...|.+.||++..++... .++-.++|.+= +..-.|-|+|-.+|.|.++.
T Consensus 565 ~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~-~~~Ea~iia~A--G~~g~VTIATNmAGRGTDIkl~~~v~~~ 641 (970)
T PRK12899 565 HRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKN-HAQEAEIIAGA--GKLGAVTVATNMAGRGTDIKLDEEAVAV 641 (970)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccch-hhhHHHHHHhc--CCCCcEEEeeccccCCcccccCchHHhc
Confidence 56788999999999999999999999999999998753 33334555543 33446888997777776644
Q ss_pred cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 001095 1060 FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFL 1111 (1158)
Q Consensus 1060 ~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l 1111 (1158)
+.=|||.-+.+-|...+.|..||+.|-|..-.-..| + |.|+.++.+.
T Consensus 642 GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~-l----SlEDdL~~~f 688 (970)
T PRK12899 642 GGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF-L----SFEDRLMRLF 688 (970)
T ss_pred CCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE-E----EcchHHHHHh
Confidence 345999999999999999999999999998865543 2 3455555443
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.12 E-value=7.1e-05 Score=93.23 Aligned_cols=96 Identities=22% Similarity=0.194 Sum_probs=73.9
Q ss_pred HHHHHHHHHC--CCeEEEEeCCCCHHH--HHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC---CCcC---
Q 001095 1005 HVIEQQLTVA--GIKFAGMYSPMHSSN--KIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI---WDRS--- 1074 (1158)
Q Consensus 1005 d~L~~~L~~~--gi~~~~ldG~t~~~~--R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~---WNP~--- 1074 (1158)
+.+++.|... +.+++++|++++..+ =..+++.|.++ ...|||.|...+-|+|+...+-|.++|.| .+|.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-e~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-EADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-CCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 3666677664 888999999876644 35789999876 56899999999999999999999888766 2332
Q ss_pred ------hHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1075 ------MEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1075 ------~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
...|+-||++|-+-.-.|.+-......
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 567999999998766677665554444
No 147
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.10 E-value=4.1e-05 Score=86.63 Aligned_cols=232 Identities=16% Similarity=0.121 Sum_probs=118.5
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHhhhhc-cC-CCchhhhhcCchhhhhHHHHHHHHHHHccccCCccccccchhHH
Q 001095 800 IKEVTFLNFTEEHAGTYNELVVTVRRNILMAD-WN-DPSHVESLLNPKQWKFRSTTIRNLRLSCCVAGHIKVTDAGEDIQ 877 (1158)
Q Consensus 800 ~e~vv~v~lS~~q~~~Y~~l~~~~~~~l~~~~-~~-~~~~~esll~~~~~~~~~~~l~~LR~~c~h~~~~~~~~~~~~~~ 877 (1158)
.++.++++|+..|+++|+.++......+...- .. ....+..+............+.+|+.+|+||.++.........
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~l- 82 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQL- 82 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccc-
Confidence 36788999999999999999876665553321 11 1122222233344455667789999999999764311110000
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHhhhcCCCccchhhhhhhhccccCCCCCCCCCcccccCCccccCCCCCCCCCCCCChh
Q 001095 878 ETMDVLVENGLDPLSQEYAFIKYNLLNGGNCLRHILCLDCVAMDSEKCSLPGCGFLYEMQSPEILTRPENPNPKWPVPQD 957 (1158)
Q Consensus 878 ~~l~~l~~~~~~~~s~~~~~l~~~l~~~~~c~~h~~C~~c~~~~~~~~~~p~C~~~~~~~~~e~l~~~~~~~~~~~~~~~ 957 (1158)
...+
T Consensus 83 ----------------------------------------------------------------------------l~~e 86 (297)
T PF11496_consen 83 ----------------------------------------------------------------------------LLSE 86 (297)
T ss_dssp -----------------------------------------------------------------------------STT
T ss_pred ----------------------------------------------------------------------------ccch
Confidence 0000
Q ss_pred hhhhccccccccCchHHHHHHhc-CcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHH--
Q 001095 958 LIELQPSYRQWSNTNTFLKQDLY-RPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSL-- 1034 (1158)
Q Consensus 958 lie~~~~~~~~~s~~~~L~~~L~-~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i-- 1034 (1158)
..+ .....|++-.+...|+ .+........+.+++|.++-..++|+||.+|-..++.+.+++|..-..+....-
T Consensus 87 ~~~----~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~ 162 (297)
T PF11496_consen 87 PAE----WLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKN 162 (297)
T ss_dssp HHH----HHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---
T ss_pred HHH----HHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcc
Confidence 000 0012334422233332 222222356678999999999999999999999999999999975443332222
Q ss_pred ----------HHhc--cCCCeeEEEEeCccc-----cccCcccCCEEEEECCCCCcChHHHHHhcc-cccCCCCcEEEEE
Q 001095 1035 ----------DMFR--HDASCLALLMDGSAS-----LGLDLSFVTRVFLMEPIWDRSMEEQVISRA-HRMGATRPIHVET 1096 (1158)
Q Consensus 1035 ----------~~F~--~~~~~~VLL~s~agg-----~GLNLt~An~VI~~Dp~WNP~~e~QAigRa-hRiGQ~k~V~V~r 1096 (1158)
.... ....+.|.|++..+. ..++-...+-||-||+.+|+....-..-|. +|-+ +.+-|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~Piir 240 (297)
T PF11496_consen 163 GNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIR 240 (297)
T ss_dssp -------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEE
T ss_pred cccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEE
Confidence 0111 123466777764332 224445778999999999999765444343 4443 8899999
Q ss_pred EEeCCCHHHHHHHHHHHh
Q 001095 1097 LAMRGTVEEQMLEFLQDT 1114 (1158)
Q Consensus 1097 Li~~~TIEE~Il~~l~~K 1114 (1158)
|+..+|+|--++..-+.+
T Consensus 241 Lv~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 241 LVPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EEETTSHHHHHHHHTTTS
T ss_pred EeeCCCHHHHHHHccCcc
Confidence 999999999888766544
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.10 E-value=9.1e-05 Score=93.18 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE----ECCC---CC---cChHHHHHhccc
Q 001095 1015 GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL----MEPI---WD---RSMEEQVISRAH 1084 (1158)
Q Consensus 1015 gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~----~Dp~---WN---P~~e~QAigRah 1084 (1158)
.+.++.-+.+++..+|...-+-|.++ .+.||++|.+.+-|+||.+-+.+|= |||. |. |....|..||++
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g-~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADG-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcC-ceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 34566677888999999999999755 7899999999999999986555442 4554 33 557899999999
Q ss_pred ccCC--CCcE---------EEEEEEeCC--CHHHHHHHHHHHhH
Q 001095 1085 RMGA--TRPI---------HVETLAMRG--TVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1085 RiGQ--~k~V---------~V~rLi~~~--TIEE~Il~~l~~K~ 1115 (1158)
|-+- .... .+|.=.+.. -||++....+..-.
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~l 729 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCL 729 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhh
Confidence 9753 2222 222222222 37777776666544
No 149
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.01 E-value=2.4e-05 Score=92.23 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=94.2
Q ss_pred CeEEEEeccHHHHHHHHHHH-HHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 992 DKVIIFSQFLEHIHVIEQQL-TVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 992 ~KVLVFSqf~~~ld~L~~~L-~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
-.+|||-|..+-...|...| .-.+|....++|..+..+|.+.+++|..+ .+.||++|...+.|++|.++|.||+||.+
T Consensus 388 PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g-~IwvLicTdll~RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 388 PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG-KIWVLICTDLLARGIDFKGVNLVINYDFP 466 (593)
T ss_pred CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-CeeEEEehhhhhccccccCcceEEecCCC
Confidence 47899999999999999999 66799999999999999999999999977 68999999999999999999999999998
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
=.-.....+|||.+|-|+.-. .|.|++.
T Consensus 467 ~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 467 QSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred chhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 888888999999999997753 3444443
No 150
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.99 E-value=0.00047 Score=87.73 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=52.0
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHH-cccCeEEEEeCCCCCCCccchhhh
Q 001095 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAIS-LTASNRWLLTGTPTPNTPNSQLSH 738 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~-L~a~~RwlLTGTPiqN~~~~~l~d 738 (1158)
...|++.|-.++..++ -...+.--....||+||||++-...+..-..+..+. -+..+..++|+.|-.-.. ++..
T Consensus 7 ~ggi~~~T~rIl~~Dl---L~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~--g~~~ 81 (814)
T TIGR00596 7 EGGIFSITSRILVVDL---LTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTM--GFSP 81 (814)
T ss_pred cCCEEEEechhhHhHH---hcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCccccc--chHH
Confidence 5678888888887663 223344445678999999999764432322222222 234568899999988531 1455
Q ss_pred hHHHhhhcCC
Q 001095 739 LQPMLKFLHE 748 (1158)
Q Consensus 739 L~sLl~FL~p 748 (1158)
+-.+|+-|..
T Consensus 82 l~~vmk~L~i 91 (814)
T TIGR00596 82 LETKMRNLFL 91 (814)
T ss_pred HHHHHHHhCc
Confidence 6666665554
No 151
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.99 E-value=0.00073 Score=85.17 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=85.2
Q ss_pred ccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc-------
Q 001095 987 NKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS------- 1059 (1158)
Q Consensus 987 ~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt------- 1059 (1158)
....|.-|||-+.+...-+.|...|.+.||++-.++... .++-.++|.+ .+..-.|-|+|-.+|.|.++.
T Consensus 445 ~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~-~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIkLg~n~~~ 521 (913)
T PRK13103 445 CMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKY-HEKEAEIIAQ--AGRPGALTIATNMAGRGTDILLGGNWEV 521 (913)
T ss_pred HHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhcccc-chhHHHHHHc--CCCCCcEEEeccCCCCCCCEecCCchHH
Confidence 367899999999999999999999999999998887653 2333455553 444456889997777776654
Q ss_pred ------------------------------cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEE
Q 001095 1060 ------------------------------FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1060 ------------------------------~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
+.=|||--+.+-|-..+.|..||+.|-|..-....|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 587 (913)
T PRK13103 522 EVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFY 587 (913)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 345999999999999999999999999998865554
No 152
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.0011 Score=73.87 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=82.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHH-CCCe-EEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTV-AGIK-FAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVF 1065 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~-~gi~-~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI 1065 (1158)
...+.-++||..-..+++-+...|++ .+.. .+.++.. ...|.+.+++|+++ .+.+|+.|...-.|+++...+..+
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G-~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDG-KITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcC-ceEEEEEeehhhcccccccceEEE
Confidence 45678899999999999999999954 3332 3455543 36799999999866 678999988899999999999888
Q ss_pred EECCC--CCcChHHHHHhcccccCCCC--cEEEEE
Q 001095 1066 LMEPI--WDRSMEEQVISRAHRMGATR--PIHVET 1096 (1158)
Q Consensus 1066 ~~Dp~--WNP~~e~QAigRahRiGQ~k--~V~V~r 1096 (1158)
+=.-. ++.+...|--||++|-=..- +|..++
T Consensus 379 lgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 379 LGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 86554 88889999999999975544 344443
No 153
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.91 E-value=7.4e-06 Score=101.58 Aligned_cols=55 Identities=33% Similarity=0.536 Sum_probs=44.0
Q ss_pred CCCCceeccCCCCchhHHHHHHHHhh-------------CCCcccCCccccccceec------cCCCeeeeecc
Q 001095 223 DFHGGMFCDEPGLGKTITALSLILKT-------------QGTLADPPDGVKIIWCTH------NGDPRCGYYDL 277 (1158)
Q Consensus 223 ~~~GGILaDeMGLGKTl~~LalI~~~-------------~~~~~~~P~~~~~~W~~~------~~~~~~~yy~~ 277 (1158)
..+||||||+||||||+++|+||+.. +.++++||.+++.||..+ .+....-||++
T Consensus 151 ~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g 224 (674)
T KOG1001|consen 151 SLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG 224 (674)
T ss_pred ccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCccceEEEEecc
Confidence 55799999999999999999999953 357889999999999944 33445555554
No 154
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=0.0033 Score=78.80 Aligned_cols=117 Identities=13% Similarity=0.188 Sum_probs=91.2
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCC-----
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVT----- 1062 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An----- 1062 (1158)
...+.-|||.+.....-+.|...|.+.||++-.++... .++-..+|. +.+..-.|-|+|-.+|.|.++.-..
T Consensus 423 ~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~-~e~EA~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~ 499 (925)
T PRK12903 423 HKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ-NAREAEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLEL 499 (925)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc-hhhHHHHHH--hCCCCCeEEEecccccCCcCccCchhHHHc
Confidence 56899999999999999999999999999999998853 333334554 4454567899998888887766333
Q ss_pred ---EEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 001095 1063 ---RVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQ 1112 (1158)
Q Consensus 1063 ---~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~ 1112 (1158)
|||.-+.+-|-..+.|..||++|-|..-....| + |+|+.++.+..
T Consensus 500 GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-l----SLeD~L~r~f~ 547 (925)
T PRK12903 500 GGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-I----SLDDQLFRRFS 547 (925)
T ss_pred CCcEEEecccCchHHHHHHHhcccccCCCCCcceEE-E----ecchHHHHHhC
Confidence 999999999999999999999999998865554 2 34455554433
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.75 E-value=0.0012 Score=86.14 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=86.4
Q ss_pred ccCCCcEEeecccCCcccchHHHHHHHH--h----c-CCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCCcccc
Q 001095 584 PKTLDNLAFDLAALRLALCEPLDSVRLY--L----S-RATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAH 655 (1158)
Q Consensus 584 ~~~~ggILaDelad~mGLGKTlqaiall--~----s-~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~ 655 (1158)
....+|++-. -.|.|||++++-+. + . ..+++||--. |-.|=.++|..+.... .... .........
T Consensus 271 ~~~~~G~IWH----tqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~-~~~~--~~~s~~~Lk 343 (962)
T COG0610 271 GDGKGGYIWH----TQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVA-FNDP--KAESTSELK 343 (962)
T ss_pred CcCCceEEEe----ecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhh-hhcc--cccCHHHHH
Confidence 3567899998 49999999987542 1 1 3556666654 6789999999986421 1111 111111122
Q ss_pred ccc--CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 656 SLA--WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 656 ~l~--~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
.+. ..-.|||||.+-|....... ......-....||+||||+--... .. ..+-..++.-.-+..||||+...
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~-~~~~~~~~~ivvI~DEaHRSQ~G~--~~-~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKED-ELELLKRKNVVVIIDEAHRSQYGE--LA-KLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcc-cccccCCCcEEEEEechhhccccH--HH-HHHHHHhccceEEEeeCCccccc
Confidence 222 13579999999888654322 122245567789999999877543 22 22334455566788999999987
No 156
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.70 E-value=0.00011 Score=82.97 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=87.2
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCC---CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAG---IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRV 1064 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~g---i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~V 1064 (1158)
...-+|+|||+.-..--|-|++++.+.| +.++-++|...+.+|.+.++.|+.. .+++||+|++++.||+++....+
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEEEEEehhhhccccccCCceE
Confidence 4567899999999999999999998864 5678899999999999999999876 57999999999999999999999
Q ss_pred EEECCCCCcChHHHHHhcccc
Q 001095 1065 FLMEPIWDRSMEEQVISRAHR 1085 (1158)
Q Consensus 1065 I~~Dp~WNP~~e~QAigRahR 1085 (1158)
|.+.++-..+....+|||+.|
T Consensus 581 invtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred EEEecCcccchhhhhhhccch
Confidence 999999999999988887765
No 157
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.70 E-value=0.00016 Score=84.48 Aligned_cols=110 Identities=25% Similarity=0.404 Sum_probs=87.1
Q ss_pred ccCCCCeEEEEeccHHHHHHHHHHHHHCCCe-EEEEeCCCCHHHHHHHHHHhccC-CCeeEEEEeCccccccCcccCCEE
Q 001095 987 NKALPDKVIIFSQFLEHIHVIEQQLTVAGIK-FAGMYSPMHSSNKIKSLDMFRHD-ASCLALLMDGSASLGLDLSFVTRV 1064 (1158)
Q Consensus 987 ~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~-~~~ldG~t~~~~R~~~i~~F~~~-~~~~VLL~s~agg~GLNLt~An~V 1064 (1158)
...+|+=||-||.-.-+ .+...++++|.. .+.|+|+.|++.|.+.-..||+. +.+.||++|+|.|.||||. -.+|
T Consensus 354 nlk~GDCvV~FSkk~I~--~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRi 430 (700)
T KOG0953|consen 354 NLKPGDCVVAFSKKDIF--TVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRI 430 (700)
T ss_pred cCCCCCeEEEeehhhHH--HHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEE
Confidence 35689999999865433 566777888777 99999999999999999999974 4699999999999999995 6789
Q ss_pred EEECCC-CC--------cChHHHHHhcccccCCCCc-EEEEEEEe
Q 001095 1065 FLMEPI-WD--------RSMEEQVISRAHRMGATRP-IHVETLAM 1099 (1158)
Q Consensus 1065 I~~Dp~-WN--------P~~e~QAigRahRiGQ~k~-V~V~rLi~ 1099 (1158)
||++.. +| -+...|--|||+|.|.+-+ -.|..|-.
T Consensus 431 iF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 431 IFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred EEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999876 33 2356799999999987764 34443433
No 158
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.69 E-value=0.00028 Score=70.32 Aligned_cols=121 Identities=11% Similarity=0.103 Sum_probs=63.6
Q ss_pred CCcccchHHHHHHHH------hcCCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechh
Q 001095 597 LRLALCEPLDSVRLY------LSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNR 670 (1158)
Q Consensus 597 d~mGLGKTlqaiall------~s~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~ 670 (1158)
+..|-|||-..+--+ ..+++||+.|.-.+- +|+.+.+....+++. .. .... ....+.-|-+++|.+
T Consensus 11 ~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~~~--t~-~~~~--~~~g~~~i~vMc~at 82 (148)
T PF07652_consen 11 LHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVRFH--TN-ARMR--THFGSSIIDVMCHAT 82 (148)
T ss_dssp --TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHH---HHHHHHTTTSSEEEE--ST-TSS------SSSSEEEEEHHH
T ss_pred cCCCCCCcccccHHHHHHHHHccCeEEEecccHHHH---HHHHHHHhcCCcccC--ce-eeec--cccCCCcccccccHH
Confidence 368999998766533 247999999987663 345555443222222 11 1111 122355677899999
Q ss_pred hhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc---ccCeEEEEeCCCCCCC
Q 001095 671 LSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL---TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 671 L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L---~a~~RwlLTGTPiqN~ 731 (1158)
+..... .+....+|++||+||+|..-. .|...+- .+..+ .....+.+|+||.-..
T Consensus 83 ~~~~~~----~p~~~~~yd~II~DEcH~~Dp-~sIA~rg-~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 83 YGHFLL----NPCRLKNYDVIIMDECHFTDP-TSIAARG-YLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHHHHH----TSSCTTS-SEEEECTTT--SH-HHHHHHH-HHHHHHHTTS-EEEEEESS-TT--
T ss_pred HHHHhc----CcccccCccEEEEeccccCCH-HHHhhhe-eHHHhhhccCeeEEEEeCCCCCCC
Confidence 875543 244567999999999998542 2222211 11111 2235789999997643
No 159
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.015 Score=73.31 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCeEEEEecc---HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe----CccccccCcc-cC
Q 001095 990 LPDKVIIFSQF---LEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD----GSASLGLDLS-FV 1061 (1158)
Q Consensus 990 ~~~KVLVFSqf---~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s----~agg~GLNLt-~A 1061 (1158)
-|.-.|||.+- .+..+.|.++|+.+|++...+.. .+.+.++.|..+ .+.+|+.. .+.-.||+|. ..
T Consensus 334 lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~ri 407 (1187)
T COG1110 334 LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRI 407 (1187)
T ss_pred hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccC-ceeEEEEecccccceeecCCchhhe
Confidence 45688999998 88999999999999999888864 337899999877 46777764 3567899999 78
Q ss_pred CEEEEECCC
Q 001095 1062 TRVFLMEPI 1070 (1158)
Q Consensus 1062 n~VI~~Dp~ 1070 (1158)
.++||+..|
T Consensus 408 rYaIF~GvP 416 (1187)
T COG1110 408 RYAVFYGVP 416 (1187)
T ss_pred eEEEEecCC
Confidence 999999987
No 160
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.53 E-value=3.4e-06 Score=100.21 Aligned_cols=90 Identities=21% Similarity=0.292 Sum_probs=61.4
Q ss_pred cCCCcccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchh
Q 001095 159 IMPCMKLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKT 238 (1158)
Q Consensus 159 ~~p~l~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKT 238 (1158)
..|.|..-|+|||.-|++||.. |.+. ++++-.. ++--|+|||-.||||||
T Consensus 247 lapqla~v~kPHQiGGiRFlYD--------------------------N~iE---Sl~rykk-SsGFGCILAHSMGLGKT 296 (1387)
T KOG1016|consen 247 LAPQLAHVLKPHQIGGIRFLYD--------------------------NTIE---SLGRYKK-SSGFGCILAHSMGLGKT 296 (1387)
T ss_pred ehhhhHhhcCccccCcEEEehh--------------------------hHHH---HHhhccc-cCCcceeeeeccccCce
Confidence 3456777899999999999855 1111 1111111 11239999999999999
Q ss_pred HHHHHHHHh------hCCCcccCCccccccceeccCCCeeeeeccC
Q 001095 239 ITALSLILK------TQGTLADPPDGVKIIWCTHNGDPRCGYYDLS 278 (1158)
Q Consensus 239 l~~LalI~~------~~~~~~~~P~~~~~~W~~~~~~~~~~yy~~~ 278 (1158)
||+|+++-- .+..+.+.|-..+.+|-.+..+.-.+|+..+
T Consensus 297 lQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~ 342 (1387)
T KOG1016|consen 297 LQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDT 342 (1387)
T ss_pred eEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhhhhcCCCcccC
Confidence 999999641 2345678999999999977555555555433
No 161
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.33 E-value=4.5e-05 Score=93.64 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=52.0
Q ss_pred cCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHH
Q 001095 165 LKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSL 244 (1158)
Q Consensus 165 ~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~Lal 244 (1158)
..|.|||.+|++|+..+.... .-+|||||||||||+++|.+
T Consensus 294 g~L~~~qleGln~L~~~ws~~---------------------------------------~~~ilADEmgLgktVqsi~f 334 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG---------------------------------------VDAILADEMGLGKTVQSIVF 334 (696)
T ss_pred ccccccchhhhhhhhcccccC---------------------------------------CCcccchhhcCCceeeEEEE
Confidence 689999999999997733221 24799999999999999998
Q ss_pred HHh-------hCCCcccCCccccccceeccC
Q 001095 245 ILK-------TQGTLADPPDGVKIIWCTHNG 268 (1158)
Q Consensus 245 I~~-------~~~~~~~~P~~~~~~W~~~~~ 268 (1158)
+.. ..+.++++|.+.+.+|.++..
T Consensus 335 l~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~ 365 (696)
T KOG0383|consen 335 LYSLPKEIHSPGPPLVVAPLSTIVNWEREFE 365 (696)
T ss_pred EeecccccCCCCCceeeccCccccCCCCchh
Confidence 653 235678999999999997733
No 162
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.00018 Score=89.77 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=50.8
Q ss_pred ccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHH
Q 001095 164 KLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALS 243 (1158)
Q Consensus 164 ~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~La 243 (1158)
...|||||++++.||.... ..++||++..||.|||+++|+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~g----------------------------------------r~r~GIIvLPtGaGKTlvai~ 292 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNG----------------------------------------RARSGIIVLPCGAGKSLVGVT 292 (732)
T ss_pred CCCcCHHHHHHHHHHHhcC----------------------------------------CCCCcEEEeCCCCChHHHHHH
Confidence 4689999999999986410 114799999999999999999
Q ss_pred HHHhh-CCCcccCCccc-cccceec
Q 001095 244 LILKT-QGTLADPPDGV-KIIWCTH 266 (1158)
Q Consensus 244 lI~~~-~~~~~~~P~~~-~~~W~~~ 266 (1158)
.+... ++++++||.++ +.||..+
T Consensus 293 aa~~l~k~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 293 AACTVKKSCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred HHHHhCCCEEEEeCcHHHHHHHHHH
Confidence 88754 47888999886 7799954
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.20 E-value=0.014 Score=72.82 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=75.0
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--cCCEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS--FVTRVF 1065 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt--~An~VI 1065 (1158)
...|++|-|||....+.+++++.....+.++..++|..+.. -+ ++-...+|++-|.+..+|+++- ..+.|+
T Consensus 279 L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~----dv---~~W~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 279 LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE----DV---ESWKKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc----cc---ccccceeEEEEeceEEEEeccchhhceEEE
Confidence 45789999999999999999999999999999998866544 22 3345788999998888888886 345555
Q ss_pred EE-CC-CCCcCh--HHHHHhcccccCCCCcEEEE
Q 001095 1066 LM-EP-IWDRSM--EEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1066 ~~-Dp-~WNP~~--e~QAigRahRiGQ~k~V~V~ 1095 (1158)
.| .| .--|.. ..|.+||+..++..+ +.||
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRvR~l~~~e-i~v~ 384 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRVRSLLDNE-IYVY 384 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHHHhhccCe-EEEE
Confidence 55 22 233554 489999999987543 4554
No 164
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.18 E-value=0.031 Score=71.35 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=84.3
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--------
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS-------- 1059 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt-------- 1059 (1158)
...|.-|||-+.....-+.|.+.|...||++-.++... .++-.++|.+= +..-.|-|+|-.+|.|-++.
T Consensus 625 ~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~-h~~EAeIVA~A--G~~GaVTIATNMAGRGTDIkLg~~V~e~ 701 (1112)
T PRK12901 625 SEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKL-HQKEAEIVAEA--GQPGTVTIATNMAGRGTDIKLSPEVKAA 701 (1112)
T ss_pred HHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccc-hhhHHHHHHhc--CCCCcEEEeccCcCCCcCcccchhhHHc
Confidence 56899999999999999999999999999998887753 23334555544 33345888997777776644
Q ss_pred cCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEE
Q 001095 1060 FVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1060 ~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
+.=|||.-+.+-+...+.|..||+.|-|..-....|
T Consensus 702 GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 702 GGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 567999999999999999999999999998865544
No 165
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.80 E-value=0.11 Score=65.93 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=53.2
Q ss_pred ccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCC-CHHHHHHHHHHhccCCCeeEEEEeCccccccC
Q 001095 987 NKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPM-HSSNKIKSLDMFRHDASCLALLMDGSASLGLD 1057 (1158)
Q Consensus 987 ~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t-~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLN 1057 (1158)
....+.-|||-+.....-+.|...|...||++-.++... ..++-.++|.+= +..-.|-|+|-.+|.|.+
T Consensus 420 ~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G~VTIATNMAGRGTD 489 (870)
T CHL00122 420 MHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRKGSITIATNMAGRGTD 489 (870)
T ss_pred HHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCCCcEEEeccccCCCcC
Confidence 367899999999999999999999999999999999863 334445666663 444468888866666644
No 166
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.48 E-value=0.0032 Score=71.77 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=96.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
+++.+||..-....+++...|...|+....|+|++....|...+..|+.. ...+|+.|+.|+.|++..--..||.||.+
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~~lvvTdvaaRG~diplldnvinyd~p 339 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTSILVVTDVAARGLDIPLLDNVINYDFP 339 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccceEEEehhhhccCCCccccccccccCC
Confidence 67899999999999999999999999999999999999999999999865 56799999999999999999999999999
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEEeCC
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLAMRG 1101 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~ 1101 (1158)
=.+.....++||+.|-|.+- .-|-+++.+
T Consensus 340 ~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 340 PDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred CCCceEEEEecchhhccccc--eEEEEEecc
Confidence 99999999999999988553 445555543
No 167
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.07 E-value=0.67 Score=59.14 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=51.8
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHHHHHHHhccCCCeeEEEEeCccccccC
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSP-MHSSNKIKSLDMFRHDASCLALLMDGSASLGLD 1057 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~-t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLN 1057 (1158)
...|.-|||-+.....-+.|...|.+.||++-.++.. ...++-.++|.+= +..-.|-|+|-.+|.|-+
T Consensus 436 ~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~GaVTIATNMAGRGTD 504 (939)
T PRK12902 436 HKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRKGAVTIATNMAGRGTD 504 (939)
T ss_pred HhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCCCcEEEeccCCCCCcC
Confidence 5689999999999999999999999999999999885 3444445666653 333457777765555533
No 168
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.01 E-value=0.013 Score=66.83 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=95.9
Q ss_pred eEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCCCC
Q 001095 993 KVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPIWD 1072 (1158)
Q Consensus 993 KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~WN 1072 (1158)
=-|||+.-.+..+.+.-.|...||....++.+....+|..+-+.+.+++ +.|+..|-+-|.|++=....-||+.+++-|
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~-~PvI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE-IPVIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC-CCEEEEEeccccccCCcceeEEEecCchhh
Confidence 4589999999999999999999999999999999999999999999774 578888999999999999999999998888
Q ss_pred cChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1073 RSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1073 P~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
-+-.-|--||++|-|-..-+..| +.++..+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLY--YsR~D~~ 365 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLY--YSRQDKN 365 (641)
T ss_pred hHHHHHhccccccCCCccceeee--ecccchH
Confidence 88999999999999987777766 4555443
No 169
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.98 E-value=0.0026 Score=81.18 Aligned_cols=124 Identities=32% Similarity=0.406 Sum_probs=111.7
Q ss_pred ccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-CccccccCcccCCEEE
Q 001095 987 NKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GSASLGLDLSFVTRVF 1065 (1158)
Q Consensus 987 ~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~agg~GLNLt~An~VI 1065 (1158)
....-+|||||||+...+|.++.++..++|++....++ ++-...+..|.+ +.+|++. ..|+.||||..|.|||
T Consensus 1217 ~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvf 1290 (1394)
T KOG0298|consen 1217 FKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVF 1290 (1394)
T ss_pred ccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc---ceEEEEEeccCcccccHHhhhhhh
Confidence 45666999999999999999999999999998766552 466788888875 7777776 7899999999999999
Q ss_pred EECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHhHH
Q 001095 1066 LMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDTDR 1116 (1158)
Q Consensus 1066 ~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K~~ 1116 (1158)
+++|..||+.|.||+||+||+||++++.||+++..+||||.|+.+...|..
T Consensus 1291 l~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee 1341 (1394)
T KOG0298|consen 1291 LVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEE 1341 (1394)
T ss_pred eeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999998888764
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=95.60 E-value=0.033 Score=71.54 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred CCcccchHHHHHHHHhc-------CCEEEEECccc-HHHHHHH-----HHhhcC----CCCeEEEEecCCCC--------
Q 001095 597 LRLALCEPLDSVRLYLS-------RATLIVVPSYL-VDHWKTQ-----IQQHVR----PGQLHLFVWTDHKK-------- 651 (1158)
Q Consensus 597 d~mGLGKTlqaiall~s-------~~tLIVvP~sL-l~qW~~E-----i~k~~~----~~~l~v~v~~g~~~-------- 651 (1158)
.+.|.|||.+++..+.. ..+|||||..- ..-..+- .+.||. ...+++.+|...++
T Consensus 66 M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~ 145 (986)
T PRK15483 66 METGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNF 145 (986)
T ss_pred eCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccC
Confidence 36899999988887642 57999999853 3333322 224443 22478888875431
Q ss_pred -ccccccc-------CCCCEEEeechhhhhhhh-cCC---------CCCcccc--cceEEEEccccccCCCchHHHHHHH
Q 001095 652 -PSAHSLA-------WDYDVVITTFNRLSAEWG-RRK---------KSPMMQV--HWLRVMLDEGHTLGSSLNLTNKLQM 711 (1158)
Q Consensus 652 -~~~~~l~-------~~~DVVItTY~~L~~e~~-~~~---------~~~L~~~--~w~rVIlDEAH~ikn~~s~t~~~~~ 711 (1158)
....... ....|.|+|.+.|.+... ... ..++..+ .=-.||+||+|++.... +...+
T Consensus 146 ~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~---k~~~~ 222 (986)
T PRK15483 146 PAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN---KFYQA 222 (986)
T ss_pred hHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch---HHHHH
Confidence 1111111 135688999998876421 111 0111111 11369999999997532 23467
Q ss_pred HHHcccCeEEEEeCCCCC-------CCccchhhhhHHHhhhcCCCcCCCchHHHhhhccCcc
Q 001095 712 AISLTASNRWLLTGTPTP-------NTPNSQLSHLQPMLKFLHEEAYGQNQKAWDGGILRPF 766 (1158)
Q Consensus 712 ~~~L~a~~RwlLTGTPiq-------N~~~~~l~dL~sLl~FL~p~~~~~~~~~f~~~~~~p~ 766 (1158)
+..++..+.+.-|||--. |... ..|+++++-=|++ ...|++...+.+
T Consensus 223 i~~lnpl~~lrysAT~~~~~~~~g~~~~~--~~d~~NlvY~Lda------vdAyn~~LVK~I 276 (986)
T PRK15483 223 IEALKPQMIIRFGATFPDITEGKGKNKCT--RKDYYNLQFDLNA------VDSFNDGLVKGV 276 (986)
T ss_pred HHhcCcccEEEEeeecCCccccccccccc--cccccCceeecCH------HHHHHhCCcceE
Confidence 788999999999999654 2211 2245665544443 455555555444
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.88 E-value=0.7 Score=58.63 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=83.6
Q ss_pred CchHHHHHHhcCcccccccCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe
Q 001095 970 NTNTFLKQDLYRPNLESNKALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049 (1158)
Q Consensus 970 s~~~~L~~~L~~~~~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s 1049 (1158)
+...+....+..+. .....|..|||-+.....-+.+.+.|.+.||++..++-.-. .|+.-|-.+. +...-|-|+|
T Consensus 410 t~~~K~~Aiv~~I~--~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~gaVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIK--ERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPGAVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHH--HHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCCcccccc
Confidence 33444444443332 24678999999999999999999999999999998987643 4444444443 3334578888
Q ss_pred CccccccCcc-cCC----------EEEEECCCCCcChHHHHHhcccccCCC
Q 001095 1050 GSASLGLDLS-FVT----------RVFLMEPIWDRSMEEQVISRAHRMGAT 1089 (1158)
Q Consensus 1050 ~agg~GLNLt-~An----------~VI~~Dp~WNP~~e~QAigRahRiGQ~ 1089 (1158)
-.+|.|-++. ..+ +||=-+.+-+-..+.|--||++|.|-.
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 8888888877 343 677777777777888999999999943
No 172
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=94.36 E-value=2.4 Score=54.00 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=74.3
Q ss_pred CCcccchHHHHHHHHh------cCCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeech
Q 001095 597 LRLALCEPLDSVRLYL------SRATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN 669 (1158)
Q Consensus 597 d~mGLGKTlqaiall~------s~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~ 669 (1158)
+..+-|||+.+--+++ .+..|.|.|-- ++..=..++.-+.-+-.+.|--|.|.-.+. .....-++.|+|.+
T Consensus 247 ~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~--~~~k~~sv~i~tiE 324 (1008)
T KOG0950|consen 247 LPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPE--KRRKRESVAIATIE 324 (1008)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCC--CcccceeeeeeehH
Confidence 3578899987644432 36788888854 444455666666655456666666543322 12235678898888
Q ss_pred hhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHH------Hccc-CeEEEEeCCCCCCC
Q 001095 670 RLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI------SLTA-SNRWLLTGTPTPNT 731 (1158)
Q Consensus 670 ~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~------~L~a-~~RwlLTGTPiqN~ 731 (1158)
.-....+. ....=..-.-..||+||-|+|.... .......+. ...+ -..+.+|+|-.+|.
T Consensus 325 kanslin~-lie~g~~~~~g~vvVdElhmi~d~~-rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 325 KANSLINS-LIEQGRLDFLGMVVVDELHMIGDKG-RGAILELLLAKILYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred hhHhHHHH-HHhcCCccccCcEEEeeeeeeeccc-cchHHHHHHHHHHHhccccceeEeeeecccCChH
Confidence 65543221 0000011123579999999997643 112222111 1111 23588999977666
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=94.04 E-value=0.12 Score=53.74 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCC----CeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeC--ccccccCcc--cC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAG----IKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG--SASLGLDLS--FV 1061 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~g----i~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~--agg~GLNLt--~A 1061 (1158)
.+.++|||......++.+.+.+...+ +... ..+ ..++.+++++|.++.+ .||+++. .-.+|+|+. .+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~~-~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGEG-AILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSSS-EEEEEETTSCCGSSS--ECESE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhccC-eEEEEEecccEEEeecCCCchh
Confidence 45899999999999999999998753 3222 222 4578899999998765 4666664 789999999 47
Q ss_pred CEEEEECCCCC-cC-----------------------------hHHHHHhcccccCCCCcEEE
Q 001095 1062 TRVFLMEPIWD-RS-----------------------------MEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1062 n~VI~~Dp~WN-P~-----------------------------~e~QAigRahRiGQ~k~V~V 1094 (1158)
..||+.-.|+- |. ...||+||+-|-.+.+-+.|
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 78899888863 32 23489999999776554443
No 174
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.90 E-value=0.18 Score=62.91 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=58.6
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeE-EEEeCCCCHHHHHHHHHHhccC---CCeeEEEEeCccccccCc-----
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKF-AGMYSPMHSSNKIKSLDMFRHD---ASCLALLMDGSASLGLDL----- 1058 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~-~~ldG~t~~~~R~~~i~~F~~~---~~~~VLL~s~agg~GLNL----- 1058 (1158)
...|.-.+.||.|..+-. +.+.|.. .+++ +.+.|.. ..|..++++|.+. ..--||+.|.+..+|+|+
T Consensus 468 ~~~G~~lvLfTS~~~~~~-~~~~l~~-~l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~ 543 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISA-IGQLVEL-GIPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPV 543 (636)
T ss_pred HcCCCEEEEechHHHHHH-HHHHHHh-hcCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccC
Confidence 456777777888777644 4455544 3222 3445543 2567899999975 334699999999999999
Q ss_pred -----ccCCEEEEECCCCCcC
Q 001095 1059 -----SFVTRVFLMEPIWDRS 1074 (1158)
Q Consensus 1059 -----t~An~VI~~Dp~WNP~ 1074 (1158)
-..+.||+.-+|+-|.
T Consensus 544 ~p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 544 SPDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCCcccEEEEEeCCCCcC
Confidence 3579999999998774
No 175
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.54 E-value=0.16 Score=66.51 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHH----CCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCC--E
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTV----AGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVT--R 1063 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~----~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An--~ 1063 (1158)
.+.++|||.....+++.+...|.. .++... ..... ..|.+++++|+++. ..||+++.+..+|+++..-. .
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~-~~iLlgt~sf~EGVD~~g~~l~~ 748 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGE-KAILLGTSSFWEGVDFPGNGLVC 748 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCC-CeEEEEcceeecccccCCCceEE
Confidence 456899999999999999999875 344433 23222 47899999998764 46888899999999999554 5
Q ss_pred EEEECCCCC-cC-----------------------------hHHHHHhcccccCCCCcEEE
Q 001095 1064 VFLMEPIWD-RS-----------------------------MEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1064 VI~~Dp~WN-P~-----------------------------~e~QAigRahRiGQ~k~V~V 1094 (1158)
||+.-.|+- |. ...|++||+-|-.+.+-|.+
T Consensus 749 viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 749 LVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 667665653 22 24588888888877775533
No 176
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.12 E-value=0.41 Score=62.89 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
..|||||+|..|-++.... ...+ .....+|+||||++-.
T Consensus 416 ~AdivItNHa~L~~~~~~~-~~il--p~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 416 QAQILITNHAYLITRLVDN-PELF--PSFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCEEEecHHHHHHHhhcc-cccC--CCCCEEEEECcchHHH
Confidence 5789999999988664311 1222 3457999999999964
No 177
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.61 E-value=0.51 Score=62.42 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=71.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCC--eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccC--CEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGI--KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFV--TRVF 1065 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi--~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~A--n~VI 1065 (1158)
.+.++|||.....+++.+.+.|..... .+..+.-+++...|.+++++|++.++ .||+.+.+-.+|+|+.+. ..||
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~-~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK-AILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC-eEEEecCcccCccccCCCceEEEE
Confidence 445777777777888888888875422 12222222223468899999997644 478888888999999954 8889
Q ss_pred EECCCC-CcC-----------------------------hHHHHHhcccccCCCCcEEE
Q 001095 1066 LMEPIW-DRS-----------------------------MEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1066 ~~Dp~W-NP~-----------------------------~e~QAigRahRiGQ~k~V~V 1094 (1158)
+.-.|+ +|. ...|++||.-|-.+.+-|.|
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 988787 454 12588899988887775533
No 178
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.21 E-value=0.95 Score=45.80 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCC-------eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCccc--CCEEEEECCCC
Q 001095 1003 HIHVIEQQLTVAGI-------KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSF--VTRVFLMEPIW 1071 (1158)
Q Consensus 1003 ~ld~L~~~L~~~gi-------~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~--An~VI~~Dp~W 1071 (1158)
.++.+...+...+. ..+.+-| ....+..++++.|.+.....||+++...++|+|+.. +..||+.-.|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34555566666554 3344444 345567899999987654357877766999999994 56788887665
No 179
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=92.16 E-value=0.061 Score=56.00 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=31.7
Q ss_pred CceeccCCCCchhHHHHHHHHhhC-CCcccCCc-cccccceec
Q 001095 226 GGMFCDEPGLGKTITALSLILKTQ-GTLADPPD-GVKIIWCTH 266 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~~~~-~~~~~~P~-~~~~~W~~~ 266 (1158)
.++|.-.+|-|||+.++.+|+... ..+.++|. ++..||...
T Consensus 27 ~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 27 RVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHH
Confidence 578899999999999999887543 45556666 778888754
No 180
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.01 E-value=0.19 Score=61.59 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHHhccCCCeeEEEEeCccccccCcccCCEE--------EEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHH
Q 001095 1034 LDMFRHDASCLALLMDGSASLGLDLSFVTRV--------FLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEE 1105 (1158)
Q Consensus 1034 i~~F~~~~~~~VLL~s~agg~GLNLt~An~V--------I~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE 1105 (1158)
.++|..+.. .|-|.|.|++.||.||.-.+| |-+++||+...-.|-.||.||-.|...-....||++=-=|.
T Consensus 850 KqrFM~GeK-~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGEr 928 (1300)
T KOG1513|consen 850 KQRFMDGEK-LVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER 928 (1300)
T ss_pred Hhhhccccc-eeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccch
Confidence 467887654 677889999999999976555 56899999999999999999999999555555777655566
Q ss_pred HHHHHHHHhH
Q 001095 1106 QMLEFLQDTD 1115 (1158)
Q Consensus 1106 ~Il~~l~~K~ 1115 (1158)
+.-.....++
T Consensus 929 RFAS~VAKRL 938 (1300)
T KOG1513|consen 929 RFASIVAKRL 938 (1300)
T ss_pred HHHHHHHHHH
Confidence 6655554444
No 181
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=91.85 E-value=0.84 Score=58.29 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=76.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCe-EEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCccc--CCEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIK-FAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSF--VTRVFL 1066 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~-~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~--An~VI~ 1066 (1158)
.+.++|||...-.+++.+.+.+...... .+...|.. .+.+.+++|.......+++++.+-.+|+|+.. ...||+
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 3448888888888889999999887663 34444443 45589999998765578888899999999994 488888
Q ss_pred ECCCCC-cC-----------------------------hHHHHHhcccccCCCCcEEE
Q 001095 1067 MEPIWD-RS-----------------------------MEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1067 ~Dp~WN-P~-----------------------------~e~QAigRahRiGQ~k~V~V 1094 (1158)
.-.|+= |. ...||+||+.|-=+-+-|.|
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 888874 22 34699999999555555554
No 182
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=91.00 E-value=0.26 Score=61.94 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=77.8
Q ss_pred CcccchHHHHHHHHh-----cCCEEEEEC-cccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhh
Q 001095 598 RLALCEPLDSVRLYL-----SRATLIVVP-SYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRL 671 (1158)
Q Consensus 598 ~mGLGKTlqaiall~-----s~~tLIVvP-~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L 671 (1158)
..--|||+.|-..+. ..++.--.| +.|-.|=-++|+..|+... ..+|+- ++......+|+|-+.|
T Consensus 320 HTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDv-----qinPeAsCLIMTTEIL 390 (1248)
T KOG0947|consen 320 HTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDV-----QINPEASCLIMTTEIL 390 (1248)
T ss_pred cCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc----eeecce-----eeCCCcceEeehHHHH
Confidence 477899998754432 246777777 5677788888888886522 233322 1223567999999999
Q ss_pred hhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHH-HHHc-ccCeEEEEeCCCCCCC
Q 001095 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQM-AISL-TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 672 ~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~-~~~L-~a~~RwlLTGTPiqN~ 731 (1158)
++.+. +....+..+.| ||+||.|++.+.. ..-.+.- +..+ +.-.-++|||| ++|.
T Consensus 391 RsMLY-rgadliRDvE~--VIFDEVHYiND~e-RGvVWEEViIMlP~HV~~IlLSAT-VPN~ 447 (1248)
T KOG0947|consen 391 RSMLY-RGADLIRDVEF--VIFDEVHYINDVE-RGVVWEEVIIMLPRHVNFILLSAT-VPNT 447 (1248)
T ss_pred HHHHh-cccchhhccce--EEEeeeeeccccc-ccccceeeeeeccccceEEEEecc-CCCh
Confidence 98866 55566777776 9999999998753 1222221 2223 23456889999 4554
No 183
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=90.87 E-value=0.4 Score=54.14 Aligned_cols=125 Identities=14% Similarity=0.036 Sum_probs=102.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLM 1067 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~ 1067 (1158)
...|..-|||+-...--+.+...|+.+||....++..+.+.+|..+-+.+-.+ .+.|++.|-+-|.|++=....-||+-
T Consensus 314 ~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqvivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 314 DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEEEEeeecccCCCCCeeEEEec
Confidence 55777889999888888999999999999999999999999988888888655 68999999999999999999999999
Q ss_pred CCCCCcChHHH-------------------------------------------HHhcccccCCCCcEEEEEEE------
Q 001095 1068 EPIWDRSMEEQ-------------------------------------------VISRAHRMGATRPIHVETLA------ 1098 (1158)
Q Consensus 1068 Dp~WNP~~e~Q-------------------------------------------AigRahRiGQ~k~V~V~rLi------ 1098 (1158)
..+-+-...-| --||++|-||+-++..|+=.
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH
Confidence 98877777778 45889999999987776543
Q ss_pred -----eCCCHHHHHHHHHHH
Q 001095 1099 -----MRGTVEEQMLEFLQD 1113 (1158)
Q Consensus 1099 -----~~~TIEE~Il~~l~~ 1113 (1158)
+++|=-.++|++...
T Consensus 473 ssmv~~e~~g~q~ly~mv~y 492 (695)
T KOG0353|consen 473 SSMVQMENTGIQKLYEMVRY 492 (695)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 234545556655543
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=90.38 E-value=0.15 Score=54.68 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=30.7
Q ss_pred cCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHH-HHHHcccCeEEEEeCCCCCCC
Q 001095 658 AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ-MAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 658 ~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~-~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
.....|.+.+.+.++- ..+....||+||||++.. ...+ .+.++-...+++++|-|.|.+
T Consensus 100 ~~~~~Ie~~~~~~iRG----------rt~~~~~iIvDEaQN~t~-----~~~k~ilTR~g~~skii~~GD~~Q~D 159 (205)
T PF02562_consen 100 IQNGKIEIEPLAFIRG----------RTFDNAFIIVDEAQNLTP-----EELKMILTRIGEGSKIIITGDPSQID 159 (205)
T ss_dssp HHTTSEEEEEGGGGTT------------B-SEEEEE-SGGG--H-----HHHHHHHTTB-TT-EEEEEE------
T ss_pred hhcCeEEEEehhhhcC----------ccccceEEEEecccCCCH-----HHHHHHHcccCCCcEEEEecCceeec
Confidence 3355677777766652 134568999999999873 2233 344566778999999999987
No 185
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.07 E-value=0.15 Score=53.50 Aligned_cols=43 Identities=28% Similarity=0.273 Sum_probs=27.9
Q ss_pred cCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 658 AWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 658 ~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
....||||++|..|-.+....... .....-..||+||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~-~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLF-GIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHC-T--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhc-cccccCcEEEEecccchHH
Confidence 447899999999987553211111 1234557899999999965
No 186
>PRK13766 Hef nuclease; Provisional
Probab=89.82 E-value=0.24 Score=64.51 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=30.7
Q ss_pred CceeccCCCCchhHHHHHHHHhh-----CCCcccCCc-ccccccee
Q 001095 226 GGMFCDEPGLGKTITALSLILKT-----QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~~~-----~~~~~~~P~-~~~~~W~~ 265 (1158)
.++++..+|+|||++++.+++.. ...++++|. .+..||..
T Consensus 31 n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~ 76 (773)
T PRK13766 31 NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAE 76 (773)
T ss_pred CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHH
Confidence 58999999999999888777642 345667887 67777763
No 187
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=89.69 E-value=5.6 Score=47.71 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=95.4
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe-Cc-cccccCcccCCEEE
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD-GS-ASLGLDLSFVTRVF 1065 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s-~a-gg~GLNLt~An~VI 1065 (1158)
.....++|||...---.-.|..+|++.++.|+.++--++.++-..+...|.++ ...+||.| +. -=.=..+.++.+||
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEE
Confidence 34567888886654444568889999999999999999999999999999988 46888888 43 23345678899999
Q ss_pred EECCCCCcChHHHHHhcccccC----CCCcEEEEEEEeCCCHHHHHHHHHHHhHHHHHHHHh
Q 001095 1066 LMEPIWDRSMEEQVISRAHRMG----ATRPIHVETLAMRGTVEEQMLEFLQDTDRCRRLLKE 1123 (1158)
Q Consensus 1066 ~~Dp~WNP~~e~QAigRahRiG----Q~k~V~V~rLi~~~TIEE~Il~~l~~K~~l~~~v~~ 1123 (1158)
||.||-+|......+.-+..-. +..+..|.-|+++- |.--++++-...+..+++.+
T Consensus 376 FY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~--D~~~LErIVGt~ra~~ml~~ 435 (442)
T PF06862_consen 376 FYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY--DALRLERIVGTERASKMLQS 435 (442)
T ss_pred EECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh--HHHHHHHHhCHHHHHHHhcC
Confidence 9999999998777765554433 34456666677654 44444444444444455544
No 188
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=89.67 E-value=0.52 Score=57.22 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=64.2
Q ss_pred CcccchHHHHHHHHh------cCCEEEEECccc-HHHHHHHHHhhcCCCCeEEEEecCCCCcc-----------------
Q 001095 598 RLALCEPLDSVRLYL------SRATLIVVPSYL-VDHWKTQIQQHVRPGQLHLFVWTDHKKPS----------------- 653 (1158)
Q Consensus 598 ~mGLGKTlqaiall~------s~~tLIVvP~sL-l~qW~~Ei~k~~~~~~l~v~v~~g~~~~~----------------- 653 (1158)
..|.|||++..+++. .+|+||++|+++ ++|-.+-|.+- + ++|+-.-.+.++.
T Consensus 433 PPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t-g---LKVvRl~aksRE~~~S~vs~L~lh~~~~~~ 508 (935)
T KOG1802|consen 433 PPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT-G---LKVVRLCAKSREDIESDVSFLSLHEQLRNM 508 (935)
T ss_pred CCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc-C---ceEeeeehhhhhhccCCccHHHHHHHHhcc
Confidence 489999998887754 489999999986 79999989885 2 6666543221110
Q ss_pred ---------------------------------cccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccC
Q 001095 654 ---------------------------------AHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLG 700 (1158)
Q Consensus 654 ---------------------------------~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ik 700 (1158)
.+++....|||-+|--.. ....|..+.|..|++|||...-
T Consensus 509 ~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A-------gd~rl~~~kfr~VLiDEaTQat 581 (935)
T KOG1802|consen 509 DKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA-------GDRRLSKFKFRTVLIDEATQAT 581 (935)
T ss_pred CcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc-------cchhhccccccEEEEecccccC
Confidence 112233566666664322 2345667899999999998776
Q ss_pred CCc
Q 001095 701 SSL 703 (1158)
Q Consensus 701 n~~ 703 (1158)
.+.
T Consensus 582 Epe 584 (935)
T KOG1802|consen 582 EPE 584 (935)
T ss_pred Ccc
Confidence 654
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=89.62 E-value=0.88 Score=53.40 Aligned_cols=81 Identities=10% Similarity=0.111 Sum_probs=45.7
Q ss_pred CcccchHHHHHHHHh-------cCCEEEEECcccHHHH-HHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeech
Q 001095 598 RLALCEPLDSVRLYL-------SRATLIVVPSYLVDHW-KTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFN 669 (1158)
Q Consensus 598 ~mGLGKTlqaiall~-------s~~tLIVvP~sLl~qW-~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~ 669 (1158)
+-|.|||+.++.++. ....+++|+...+.+. ...+.+..... .....+....
T Consensus 9 ~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~--------------------~~~~~~~~~~ 68 (352)
T PF09848_consen 9 GAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPK--------------------LKKSDFRKPT 68 (352)
T ss_pred cCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccc--------------------hhhhhhhhhH
Confidence 489999999988753 2567788886655443 44454443100 0111111222
Q ss_pred hhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 670 RLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 670 ~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
.+.... .........++.||+||||++..
T Consensus 69 ~~i~~~---~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 69 SFINNY---SESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHHhhc---ccccccCCcCCEEEEehhHhhhh
Confidence 221110 01223456789999999999986
No 190
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.33 E-value=1.8 Score=43.76 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCC----eEEEEeCCCCHHHHHHHHHHhccCCC--eeEEEEeC--ccccccCccc--CCEEEEECCCC
Q 001095 1003 HIHVIEQQLTVAGI----KFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDG--SASLGLDLSF--VTRVFLMEPIW 1071 (1158)
Q Consensus 1003 ~ld~L~~~L~~~gi----~~~~ldG~t~~~~R~~~i~~F~~~~~--~~VLL~s~--agg~GLNLt~--An~VI~~Dp~W 1071 (1158)
.++.+.+.++..++ ..+.+.+.. ..+..+++++|++... --||+++. ..++|+||.. +..||+.-.|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 45566666666554 234455543 3455799999987533 23666554 4799999994 67888887775
No 191
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.22 E-value=1.9 Score=54.65 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=75.0
Q ss_pred ccchHHHHHHHHh-----cCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCCCCccc------ccccCCCCEEEee
Q 001095 600 ALCEPLDSVRLYL-----SRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSA------HSLAWDYDVVITT 667 (1158)
Q Consensus 600 GLGKTlqaiall~-----s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~------~~l~~~~DVVItT 667 (1158)
|.|||-.-+.++. .+.+||++|. ++..|+..-|+..|+. -.+.++|..-.... ....+..+|||-|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLRGQARVVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 8899976665542 3689999996 5889999999999974 35777887543221 1223467899998
Q ss_pred chhhhhhhhcCCCCCcccccceEEEEcccccc--CCCchHH---HHHHHHH-HcccCeEEEEeCCCCCCC
Q 001095 668 FNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTL--GSSLNLT---NKLQMAI-SLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 668 Y~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~i--kn~~s~t---~~~~~~~-~L~a~~RwlLTGTPiqN~ 731 (1158)
.+.+- .++. +..+||+||=|.- |...+.. .-....+ .......++-|+||--.+
T Consensus 248 RSAvF--------aP~~--~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 248 RSAVF--------APVE--DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred ceeEE--------eccC--CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 87664 2222 4478999998864 3222111 1111112 223344566699996554
No 192
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.86 E-value=0.52 Score=58.09 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=121.0
Q ss_pred ccchhhHHhhhHHHHhhccccccccc-CCCcEEeecccCCcccchHHHHHHHHh------cCCEEEEECcc-cHHHHHHH
Q 001095 560 GFHKIFQAFGLIRRVEKGITRWYYPK-TLDNLAFDLAALRLALCEPLDSVRLYL------SRATLIVVPSY-LVDHWKTQ 631 (1158)
Q Consensus 560 ~~~~~~Q~~Gl~~~~e~~~~~~l~~~-~~ggILaDelad~mGLGKTlqaiall~------s~~tLIVvP~s-Ll~qW~~E 631 (1158)
+.+...|.+.+.-..... .-+.|. .+-|.| +||+-|.||-.+...++. .++.|.+.-++ |.-.=++.
T Consensus 263 g~lSALQLEav~YAcQ~H--e~llPsG~RaGfL---iGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERD 337 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAH--EVLLPSGQRAGFL---IGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERD 337 (1300)
T ss_pred cchhHHHHHHHHHHHhhh--hhcCCCCccceee---eccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhc
Confidence 345566666663332221 112232 233443 345778877665555432 25666665544 44444555
Q ss_pred HHhhcCCCCeEEEEecCCCCccc---ccccCCCCEEEeechhhhhhhhc---CCCCCccc-ccc------eEEEEccccc
Q 001095 632 IQQHVRPGQLHLFVWTDHKKPSA---HSLAWDYDVVITTFNRLSAEWGR---RKKSPMMQ-VHW------LRVMLDEGHT 698 (1158)
Q Consensus 632 i~k~~~~~~l~v~v~~g~~~~~~---~~l~~~~DVVItTY~~L~~e~~~---~~~~~L~~-~~w------~rVIlDEAH~ 698 (1158)
+...-.+ .+.|+....-+-..+ ..-.-+-.|+..||+.|.-|... ++++.|.+ +.| .+||+||+|+
T Consensus 338 L~DigA~-~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHk 416 (1300)
T KOG1513|consen 338 LRDIGAT-GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHK 416 (1300)
T ss_pred hhhcCCC-CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhh
Confidence 5553222 244444332211110 11112457999999998766431 22222322 233 5789999999
Q ss_pred cCCC-------chHHHH--HHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCCC--chHHHhhhccCcch
Q 001095 699 LGSS-------LNLTNK--LQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYGQ--NQKAWDGGILRPFE 767 (1158)
Q Consensus 699 ikn~-------~s~t~~--~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~~--~~~~f~~~~~~p~~ 767 (1158)
.||- .++|.+ +..-..|..-+++-.|+|-... =.++.-..+.++||. .+..|.+.+ ..++
T Consensus 417 AKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE--------PrNMaYM~RLGlWGegtaf~eF~eFi-~AvE 487 (1300)
T KOG1513|consen 417 AKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE--------PRNMAYMVRLGLWGEGTAFPEFEEFI-HAVE 487 (1300)
T ss_pred hcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC--------cchhhhhhhhccccCCCcCccHHHHH-HHHH
Confidence 9981 123333 2333456666777788885443 234455556666663 233344332 1122
Q ss_pred hhhHHHHHH--HHHHHHhHHhhhcccccccCCCceEEEEEecCCHHHHHHHHHHHH
Q 001095 768 AEMEEGRSR--LLQLLHRCMISARKTDLQTIPLCIKEVTFLNFTEEHAGTYNELVV 821 (1158)
Q Consensus 768 ~~~~~~~~~--L~~lL~~~mlRR~K~dv~~LPpk~e~vv~v~lS~~q~~~Y~~l~~ 821 (1158)
+....+.+. +---++...|-| .+.+-.....+..++|+++-+..|+...+
T Consensus 488 kRGvGAMEIVAMDMK~rGmYiAR----QLSFkgVsFrieEv~ls~eF~k~Yn~a~~ 539 (1300)
T KOG1513|consen 488 KRGVGAMEIVAMDMKLRGMYIAR----QLSFKGVSFRIEEVPLSKEFRKVYNRAAE 539 (1300)
T ss_pred hcCCceeeeeehhhhhhhhhhhh----hccccCceEEEEecccCHHHHHHHHHHHH
Confidence 221111110 000122222111 12355667888999999999999986654
No 193
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.80 E-value=0.86 Score=59.33 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=55.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcc--cCCEEEEE
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLS--FVTRVFLM 1067 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt--~An~VI~~ 1067 (1158)
.+.+++|+....++++.+.+.|....+.. ...|... .|.+++++|+++++ .||+.+.+-.+|+++. .+..||+.
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~-~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ-QILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC-eEEEecchhhCCCCCCCCCeEEEEEe
Confidence 45677777777777888888887665544 4555332 35679999997543 5888898899999996 45666776
Q ss_pred CCCC
Q 001095 1068 EPIW 1071 (1158)
Q Consensus 1068 Dp~W 1071 (1158)
=+|+
T Consensus 722 kLPF 725 (820)
T PRK07246 722 RLPF 725 (820)
T ss_pred cCCC
Confidence 6553
No 194
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=88.68 E-value=0.37 Score=50.24 Aligned_cols=60 Identities=27% Similarity=0.342 Sum_probs=44.8
Q ss_pred cCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhHHHHHH
Q 001095 165 LKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTITALSL 244 (1158)
Q Consensus 165 ~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl~~Lal 244 (1158)
.+++|||.+++..+.... ...+++-.+|.|||..++.+
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------------------------------------------~~~~i~~~~GsGKT~~~~~~ 44 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------------------------------------------RDVILAAPTGSGKTLAALLP 44 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------------------------------------------CcEEEECCCCCchhHHHHHH
Confidence 468999999999886510 25789999999999988887
Q ss_pred HHhh------CCCcccCC-ccccccceec
Q 001095 245 ILKT------QGTLADPP-DGVKIIWCTH 266 (1158)
Q Consensus 245 I~~~------~~~~~~~P-~~~~~~W~~~ 266 (1158)
++.. ...++++| ..+..+|...
T Consensus 45 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 45 ALEALKRGKGKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred HHHHhcccCCCcEEEEeCCHHHHHHHHHH
Confidence 7643 34566777 6666777743
No 195
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=88.61 E-value=1.2 Score=55.80 Aligned_cols=126 Identities=14% Similarity=0.150 Sum_probs=74.2
Q ss_pred CCcccchHHHHHHHHhc-------CCEEEEECcccH----HHHHHHHHhhc-----CCCCeEEEEecCCCCcccccccCC
Q 001095 597 LRLALCEPLDSVRLYLS-------RATLIVVPSYLV----DHWKTQIQQHV-----RPGQLHLFVWTDHKKPSAHSLAWD 660 (1158)
Q Consensus 597 d~mGLGKTlqaiall~s-------~~tLIVvP~sLl----~qW~~Ei~k~~-----~~~~l~v~v~~g~~~~~~~~l~~~ 660 (1158)
.+.|.|||.+-+.++.. -.++||||..-+ .+=-.++..|| ..-.+..++|..............
T Consensus 81 METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~~~~~~~ 160 (985)
T COG3587 81 METGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFKFKSNNK 160 (985)
T ss_pred EecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHhhccCCC
Confidence 36899999877776542 489999997643 22344555555 223577777753221111111224
Q ss_pred CCEEEeechhhhhh---hhc--------CC-----CCC---cccccceEEEEccccccCCCchHHHHHHHHHHcccCeEE
Q 001095 661 YDVVITTFNRLSAE---WGR--------RK-----KSP---MMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRW 721 (1158)
Q Consensus 661 ~DVVItTY~~L~~e---~~~--------~~-----~~~---L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~Rw 721 (1158)
..|+|.+.+.+.++ .+. .. .++ |.+.+ -.||+||-|++... ...+.++..++....+
T Consensus 161 ~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~---~k~~~~i~~l~pl~il 236 (985)
T COG3587 161 PCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD---DKTYGAIKQLNPLLIL 236 (985)
T ss_pred ceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC-CEEEecChhhcccc---hHHHHHHHhhCceEEE
Confidence 55777777766654 110 00 111 22222 36999999999964 2445577788877776
Q ss_pred EEeCC
Q 001095 722 LLTGT 726 (1158)
Q Consensus 722 lLTGT 726 (1158)
=-+||
T Consensus 237 RfgAT 241 (985)
T COG3587 237 RFGAT 241 (985)
T ss_pred Eeccc
Confidence 67777
No 196
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=88.61 E-value=20 Score=47.23 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=42.6
Q ss_pred CCCEEEeechhhhhhh--hc--CCCCCcccccceEEEEccccccCCCchHHHHHHHHH--HcccCeEEEEeCCCCCCC
Q 001095 660 DYDVVITTFNRLSAEW--GR--RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI--SLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~--~~--~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~--~L~a~~RwlLTGTPiqN~ 731 (1158)
..+|+|+|.+.+..-. .+ ....++....=..||+||.|..-.... ......+. ..-..+.++||||-.+.-
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 5788888877765432 11 112234455567899999999874321 11112222 345678899999966654
No 197
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.54 E-value=1.9 Score=55.51 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHHCCC-------eEEEEeCCCCHHHHHHHHHHhccC---CCeeEEEEe--CccccccC
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLTVAGI-------KFAGMYSPMHSSNKIKSLDMFRHD---ASCLALLMD--GSASLGLD 1057 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~~~gi-------~~~~ldG~t~~~~R~~~i~~F~~~---~~~~VLL~s--~agg~GLN 1057 (1158)
.+..+|||...-..++.+.+.+...|+ +.+.+-+. ...++.+++++|... ...-||++. ...++|+|
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 456888888888888888777776543 23444443 235789999999752 223477776 57799999
Q ss_pred cc--cCCEEEEECCCC-CcC------------------------------hHHHHHhcccccCCCCcEEE
Q 001095 1058 LS--FVTRVFLMEPIW-DRS------------------------------MEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1058 Lt--~An~VI~~Dp~W-NP~------------------------------~e~QAigRahRiGQ~k~V~V 1094 (1158)
+. .+.-||++-.|+ ||. ...||+||+-|--+-+-+.|
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ii 669 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIV 669 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEE
Confidence 99 478899998887 543 12488999998666555433
No 198
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=88.48 E-value=1.2 Score=57.92 Aligned_cols=135 Identities=15% Similarity=0.151 Sum_probs=83.3
Q ss_pred CcccchHHHHHHHH-----hcCCEEEEEC-cccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhh
Q 001095 598 RLALCEPLDSVRLY-----LSRATLIVVP-SYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRL 671 (1158)
Q Consensus 598 ~mGLGKTlqaiall-----~s~~tLIVvP-~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L 671 (1158)
..|-|||+.+-..+ ...++.-..| +.|..|=-.+|..-++.-.-.+=+++|+-. ...+..+++.|-+.|
T Consensus 142 pTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~-----IN~~A~clvMTTEIL 216 (1041)
T COG4581 142 PTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVS-----INPDAPCLVMTTEIL 216 (1041)
T ss_pred cCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceeccee-----eCCCCceEEeeHHHH
Confidence 58999998765433 3357888899 678889888877776531011122333321 113567777777999
Q ss_pred hhhhhcCCCCCcccccceEEEEccccccCCCchHHHHH-HHHHHcc-cCeEEEEeCCCCCCCccchhhhhHHHhhhcC
Q 001095 672 SAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKL-QMAISLT-ASNRWLLTGTPTPNTPNSQLSHLQPMLKFLH 747 (1158)
Q Consensus 672 ~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~-~~~~~L~-a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~ 747 (1158)
++... +....+..+.| ||+||.|+|+...- .-.. ..+..+. .-+-++||+| +.|. .||-..+.-++
T Consensus 217 RnMly-rg~~~~~~i~~--ViFDEvHyi~D~eR-G~VWEE~Ii~lP~~v~~v~LSAT-v~N~-----~EF~~Wi~~~~ 284 (1041)
T COG4581 217 RNMLY-RGSESLRDIEW--VVFDEVHYIGDRER-GVVWEEVIILLPDHVRFVFLSAT-VPNA-----EEFAEWIQRVH 284 (1041)
T ss_pred HHHhc-cCcccccccce--EEEEeeeecccccc-chhHHHHHHhcCCCCcEEEEeCC-CCCH-----HHHHHHHHhcc
Confidence 97755 33444555555 99999999987542 2222 2333333 3477889999 4443 46666555444
No 199
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.81 E-value=1.2 Score=51.57 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=71.8
Q ss_pred cccchHHHH----HHHHhc-----CCEEEEECcc-cHHHH---HHHHHhhcCCCCeEEEEecCCCCccc-ccccCCCCEE
Q 001095 599 LALCEPLDS----VRLYLS-----RATLIVVPSY-LVDHW---KTQIQQHVRPGQLHLFVWTDHKKPSA-HSLAWDYDVV 664 (1158)
Q Consensus 599 mGLGKTlqa----iall~s-----~~tLIVvP~s-Ll~qW---~~Ei~k~~~~~~l~v~v~~g~~~~~~-~~l~~~~DVV 664 (1158)
.|-|||..- +.-+.+ -+.||+.|.. |.-|= ..++.+++. .-.++.++|...... ..+..+.|||
T Consensus 67 tgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~--lr~s~~~ggD~~eeqf~~l~~npDii 144 (529)
T KOG0337|consen 67 TGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTK--LRQSLLVGGDSIEEQFILLNENPDII 144 (529)
T ss_pred cCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccc--hhhhhhcccchHHHHHHHhccCCCEE
Confidence 677888532 222222 3799999986 55554 445555443 233446666654433 3444589999
Q ss_pred EeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHccc-CeEEEEeCCC
Q 001095 665 ITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTA-SNRWLLTGTP 727 (1158)
Q Consensus 665 ItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a-~~RwlLTGTP 727 (1158)
|.|-..+..... .-.|.--.-.+||+|||.+|-...-+......+.++.. ...+++|||-
T Consensus 145 ~ATpgr~~h~~v---em~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 145 IATPGRLLHLGV---EMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred EecCceeeeeeh---heeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 998877652211 11133334567999999998643222233334555553 3588999994
No 200
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=87.74 E-value=0.85 Score=55.31 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=35.8
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
..+||.+|-..-.. ..+....||.||+|||-..--+.+ +.. +-...+++|.|-|-|=-
T Consensus 338 n~~VVfaTl~ga~~-------~~~~~~~fD~vIIDEaaQamE~~c----Wip---vlk~kk~ILaGDp~QLp 395 (649)
T KOG1803|consen 338 NSRVVFATLGGALD-------RLLRKRTFDLVIIDEAAQAMEPQC----WIP---VLKGKKFILAGDPKQLP 395 (649)
T ss_pred ccceEEEeccchhh-------hhhcccCCCEEEEehhhhhccchh----hhH---HhcCCceEEeCCcccCC
Confidence 44555555443321 334556799999999976654331 222 22334999999998865
No 201
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=87.40 E-value=3 Score=53.48 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=53.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH-CCCeEEEEeCCCCHHHHHHHHHHhccC---CCeeEEEEeCccccccCcc--cCCEE
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTV-AGIKFAGMYSPMHSSNKIKSLDMFRHD---ASCLALLMDGSASLGLDLS--FVTRV 1064 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~-~gi~~~~ldG~t~~~~R~~~i~~F~~~---~~~~VLL~s~agg~GLNLt--~An~V 1064 (1158)
+.+++||.....+++.+...|.. .++. +...|. ..|.+++++|.+. ....||+.+.+-.+|+|+. ..+.|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 33467776666777788888864 3433 344563 3577889878742 2335888888889999998 46889
Q ss_pred EEECCCC
Q 001095 1065 FLMEPIW 1071 (1158)
Q Consensus 1065 I~~Dp~W 1071 (1158)
|+.-+|+
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 9988776
No 202
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=85.90 E-value=4 Score=50.30 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=84.7
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHC------CC--eEEEEeCCCCHHHHHHHHHHhccCC--CeeEEEEeCccccccC
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVA------GI--KFAGMYSPMHSSNKIKSLDMFRHDA--SCLALLMDGSASLGLD 1057 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~------gi--~~~~ldG~t~~~~R~~~i~~F~~~~--~~~VLL~s~agg~GLN 1057 (1158)
.++..-+|||=.-.+-++.+.+.|.+. +. -.+-++|+++.++..+ -|...+ .-+|+|+|-.+-..|+
T Consensus 255 ~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlT 331 (674)
T KOG0922|consen 255 TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLT 331 (674)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEE
Confidence 466669999999998888888887664 11 2467899999876544 466554 4588888888888888
Q ss_pred cccCCEEEEECCC------CCcC-----------hHHHHHhcccccCCCCcEEEEEEEeCCCH
Q 001095 1058 LSFVTRVFLMEPI------WDRS-----------MEEQVISRAHRMGATRPIHVETLAMRGTV 1103 (1158)
Q Consensus 1058 Lt~An~VI~~Dp~------WNP~-----------~e~QAigRahRiGQ~k~V~V~rLi~~~TI 1103 (1158)
..+-.+|| |+. |||. .-.||.-|++|-|.+.+..+|||+++.-.
T Consensus 332 I~GI~YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 332 IDGIRYVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred ecceEEEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 88877775 443 5553 45789999999999999999999998766
No 203
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=85.19 E-value=0.49 Score=53.93 Aligned_cols=41 Identities=24% Similarity=0.188 Sum_probs=28.7
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
...||||++|..|..+........ ......||+||||+|-.
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~--~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSI--ELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcc--cccccEEEEeCccChHH
Confidence 378999999999975532111111 22468999999999974
No 204
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=85.19 E-value=0.49 Score=53.93 Aligned_cols=41 Identities=24% Similarity=0.188 Sum_probs=28.7
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
...||||++|..|..+........ ......||+||||+|-.
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~--~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSI--ELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcc--cccccEEEEeCccChHH
Confidence 378999999999975532111111 22468999999999974
No 205
>PHA02558 uvsW UvsW helicase; Provisional
Probab=84.73 E-value=0.68 Score=57.09 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=40.3
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCCCCCCC
Q 001095 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGTPiqN~ 731 (1158)
+.+|+|+||+.+.+.. ...+ -.|+.||+||||++...+ ....+..+ +++++++|||||....
T Consensus 201 ~~~I~VaT~qsl~~~~----~~~~--~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLTATp~~~~ 263 (501)
T PHA02558 201 DAPIVVSTWQSAVKQP----KEWF--DQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLTGSLRDGK 263 (501)
T ss_pred CCCEEEeeHHHHhhch----hhhc--cccCEEEEEchhcccchh----HHHHHHhhhccceEEEEeccCCCcc
Confidence 3467777777765321 1111 267899999999998642 12234445 5788999999996443
No 206
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=83.60 E-value=0.63 Score=45.27 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=33.3
Q ss_pred CceeccCCCCchhHHHHHHHHhh------CCCcccCCcccccccee
Q 001095 226 GGMFCDEPGLGKTITALSLILKT------QGTLADPPDGVKIIWCT 265 (1158)
Q Consensus 226 GGILaDeMGLGKTl~~LalI~~~------~~~~~~~P~~~~~~W~~ 265 (1158)
+.+++..+|.|||.+++.++... +..++++|...+.+|..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~ 47 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVA 47 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHH
Confidence 67999999999999999998754 45567889998888874
No 207
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=83.07 E-value=7.2 Score=51.02 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=29.3
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
...|||||++..|.++.... ..+ ..++.||+||||++-.
T Consensus 412 ~~AdivItNHall~~~~~~~--~~~--p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 412 KTARLLITNHAYFLTRVQDD--KDF--ARNKVLVFDEAQKLML 450 (820)
T ss_pred HhCCEEEEchHHHHHHHhhc--cCC--CCCCEEEEECcchhHH
Confidence 36799999999988765322 122 3689999999999973
No 208
>PRK04296 thymidine kinase; Provisional
Probab=82.99 E-value=2.1 Score=45.53 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=22.7
Q ss_pred cccceEEEEccccccCCCchHHHHHHHHHHc-ccCeEEEEeCC
Q 001095 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISL-TASNRWLLTGT 726 (1158)
Q Consensus 685 ~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L-~a~~RwlLTGT 726 (1158)
.-.+++||+||+|.+... .....+..+ .....+++||-
T Consensus 76 ~~~~dvviIDEaq~l~~~----~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKE----QVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCCCEEEEEccccCCHH----HHHHHHHHHHHcCCeEEEEec
Confidence 347899999999998531 122233332 33446667764
No 209
>PRK10536 hypothetical protein; Provisional
Probab=82.62 E-value=0.84 Score=50.62 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=39.4
Q ss_pred CCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 661 YDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 661 ~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
.-|.|.+...++-. .+.-..|||||||++.-. .....+.++....+++++|-|-|.+
T Consensus 160 ~~Iei~~l~ymRGr----------tl~~~~vIvDEaqn~~~~----~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 160 GKVEIAPFAYMRGR----------TFENAVVILDEAQNVTAA----QMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred CcEEEecHHHhcCC----------cccCCEEEEechhcCCHH----HHHHHHhhcCCCCEEEEeCChhhcc
Confidence 34666666665411 234478999999999742 2223455778888999999999987
No 210
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=81.79 E-value=4.9 Score=45.08 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=66.5
Q ss_pred chhhHHhhhHHHHhhcccccccccCCCcEEeecccCCcccchHHHHHHH--H---hcCCEEEEECcccH----HHHHHHH
Q 001095 562 HKIFQAFGLIRRVEKGITRWYYPKTLDNLAFDLAALRLALCEPLDSVRL--Y---LSRATLIVVPSYLV----DHWKTQI 632 (1158)
Q Consensus 562 ~~~~Q~~Gl~~~~e~~~~~~l~~~~~ggILaDelad~mGLGKTlqaial--l---~s~~tLIVvP~sLl----~qW~~Ei 632 (1158)
+.+-|..|.+-.. .|-++-+ ..|=|||+.+.-. + .-+++=||+...-+ .+|...+
T Consensus 78 p~~vQll~~l~L~-------------~G~laEm---~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 78 PYDVQLLGALALH-------------KGRLAEM---KTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp --HHHHHHHHHHH-------------TTSEEEE---STTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred ccHHHHhhhhhcc-------------cceeEEe---cCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHH
Confidence 4456777764432 2344443 5888999876432 1 22567777776544 4799999
Q ss_pred HhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhc----CCCCCcccccceEEEEcccccc
Q 001095 633 QQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGR----RKKSPMMQVHWLRVMLDEGHTL 699 (1158)
Q Consensus 633 ~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~----~~~~~L~~~~w~rVIlDEAH~i 699 (1158)
-++++ +.+-...+..........-..||+=+|-+.+..++-+ ........-.++.+|+||+..+
T Consensus 142 y~~LG---lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 142 YEFLG---LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHTT-----EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHhh---hccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 99987 6776665544322221222568877776665543211 1122223467889999998754
No 211
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=81.71 E-value=2 Score=54.62 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=68.3
Q ss_pred eCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC-CCCcChHHHHHhcccccCCCCcEEEEEEEeC
Q 001095 1022 YSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP-IWDRSMEEQVISRAHRMGATRPIHVETLAMR 1100 (1158)
Q Consensus 1022 dG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp-~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~ 1100 (1158)
+.+++...|..+---|+.+ ...||++|.+.+.|+|..+-+.|+..|. ..||-...|+-|||+|-|=..--+|..+=.+
T Consensus 969 HaglNr~yR~~VEvLFR~g-~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 969 HAGLNRKYRSLVEVLFRQG-HLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred ccccchHHHHHHHHHhhcC-ceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCc
Confidence 3456778888888888866 6889999999999999998888888765 5899999999999999997665555444333
Q ss_pred CCHHHHHHHHHHHhH
Q 001095 1101 GTVEEQMLEFLQDTD 1115 (1158)
Q Consensus 1101 ~TIEE~Il~~l~~K~ 1115 (1158)
-.+|++++..++
T Consensus 1048 ---~~kv~rLlts~L 1059 (1330)
T KOG0949|consen 1048 ---RQKVQRLLTSLL 1059 (1330)
T ss_pred ---HHHHHHHHHHhh
Confidence 235555555443
No 212
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=80.09 E-value=0.72 Score=37.01 Aligned_cols=37 Identities=38% Similarity=0.747 Sum_probs=30.8
Q ss_pred CCCCcHHHHHHHHhhcCCCcHHHHHHHhhhhhhcccc
Q 001095 122 ISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAAS 158 (1158)
Q Consensus 122 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (1158)
|..||+|++..|++.++..|+.+++..|+.++.....
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 4689999999999999999999999999988886643
No 214
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=78.04 E-value=1.7 Score=55.69 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
...|||||+++.|-++........|-......+|+||||++-.
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 4789999999999877642122344345688999999999974
No 215
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=76.35 E-value=13 Score=46.80 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=29.1
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
..+|||||++..|...... ....| ..++.||+||||++-.
T Consensus 181 ~~AdivItNHalL~~~~~~-~~~iL--P~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRD-KWGLL--PQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhh-hcCCC--CCCCEEEEeCCcchHH
Confidence 3789999999998865322 11222 3478999999999964
No 216
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=75.58 E-value=2.7 Score=50.91 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCcccCChHHHHHHHH-HHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchhH
Q 001095 161 PCMKLKLFPHQQAAVE-WMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKTI 239 (1158)
Q Consensus 161 p~l~~~L~~yQ~~~l~-Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKTl 239 (1158)
+....+|+|||.+++. |...++. .+-|++.=-.|-|||+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~----------------------------------------~~~gvivlpTGaGKT~ 70 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT----------------------------------------ERRGVIVLPTGAGKTV 70 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhccc----------------------------------------CCceEEEeCCCCCHHH
Confidence 4566789999999998 4433221 1247777778999999
Q ss_pred HHHHHHHhhCC-CcccCCcc-ccccce
Q 001095 240 TALSLILKTQG-TLADPPDG-VKIIWC 264 (1158)
Q Consensus 240 ~~LalI~~~~~-~~~~~P~~-~~~~W~ 264 (1158)
.++..|..... +++++|.. ++.||.
T Consensus 71 va~~~~~~~~~~~Lvlv~~~~L~~Qw~ 97 (442)
T COG1061 71 VAAEAIAELKRSTLVLVPTKELLDQWA 97 (442)
T ss_pred HHHHHHHHhcCCEEEEECcHHHHHHHH
Confidence 99999986543 77777665 578997
No 217
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.99 E-value=1.6 Score=47.19 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=50.6
Q ss_pred EEEeCccccccCcccCCEEEEECCCCCcChHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHHHHHHh
Q 001095 1046 LLMDGSASLGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLEFLQDT 1114 (1158)
Q Consensus 1046 LL~s~agg~GLNLt~An~VI~~Dp~WNP~~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~~l~~K 1114 (1158)
+++|..-|.|++....|-||+||.+-.+.....+.+|+.|.|-+--. + .++.... +.+|+.-.+.+
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgla-i-tfvs~e~-da~iLn~vqdR 367 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA-I-TFVSDEN-DAKILNPVQDR 367 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccce-e-ehhcchh-hHHHhchhhHh
Confidence 66778889999999999999999999999999999999999976632 2 2333322 44555544443
No 218
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=73.88 E-value=4.5 Score=50.28 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred cccchHHHHHHHH-----hcCCEEEEEC-cccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhh
Q 001095 599 LALCEPLDSVRLY-----LSRATLIVVP-SYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLS 672 (1158)
Q Consensus 599 mGLGKTlqaiall-----~s~~tLIVvP-~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~ 672 (1158)
..-|||+.|--.+ ...+++--.| +.|-.|=-+|+..-|+. |-..+|.-. +..+....|+|-+.|+
T Consensus 153 TSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~D----VGLMTGDVT-----InP~ASCLVMTTEILR 223 (1041)
T KOG0948|consen 153 TSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKD----VGLMTGDVT-----INPDASCLVMTTEILR 223 (1041)
T ss_pred cCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcc----cceeeccee-----eCCCCceeeeHHHHHH
Confidence 5679998753322 2356666677 56777877787776653 112222211 1124567788889999
Q ss_pred hhhhcCCCCCcccccceEEEEccccccCCCchHHHH-HH--HHHHcccCeEEEEeCCC
Q 001095 673 AEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNK-LQ--MAISLTASNRWLLTGTP 727 (1158)
Q Consensus 673 ~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~-~~--~~~~L~a~~RwlLTGTP 727 (1158)
+... +....+..+.| ||+||.|+++... +.. +. .+..-+..+-..||||-
T Consensus 224 sMLY-RGSEvmrEVaW--VIFDEIHYMRDkE--RGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 224 SMLY-RGSEVMREVAW--VIFDEIHYMRDKE--RGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred HHHh-ccchHhheeee--EEeeeehhccccc--cceeeeeeEEeccccceEEEEeccC
Confidence 8765 55677888888 9999999999753 111 00 11122344557789983
No 219
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=72.86 E-value=10 Score=40.57 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=25.1
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHccc-CeEEEEeCCCCCCC
Q 001095 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISLTA-SNRWLLTGTPTPNT 731 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a-~~RwlLTGTPiqN~ 731 (1158)
..++||+|||.++.+.. ....+..+.. ..++++.|-|-|-.
T Consensus 93 ~~~vliVDEasmv~~~~----~~~ll~~~~~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQ----LARLLRLAKKSGAKLILVGDPNQLP 134 (196)
T ss_dssp STSEEEESSGGG-BHHH----HHHHHHHS-T-T-EEEEEE-TTSHH
T ss_pred cccEEEEecccccCHHH----HHHHHHHHHhcCCEEEEECCcchhc
Confidence 45699999999998532 2223333333 67999999988854
No 220
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=71.14 E-value=13 Score=48.37 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=84.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHH----CCCeEEEEeCCCCHHHHHHHHHHhccCCCe-e-EEEEeCccccccCcccC
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTV----AGIKFAGMYSPMHSSNKIKSLDMFRHDASC-L-ALLMDGSASLGLDLSFV 1061 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~----~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~-~-VLL~s~agg~GLNLt~A 1061 (1158)
.....-+|||-.-..-++-..+.|.+ ..+..+-++|..+.++..+ -|+..+.- + |.|+|-.+-++|+....
T Consensus 256 ~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gI 332 (845)
T COG1643 256 REGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGI 332 (845)
T ss_pred cCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCe
Confidence 44577899998888888888888887 3577889999999887766 57654432 3 99999999999999988
Q ss_pred CEEEEECCC------CCcC-----------hHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1062 TRVFLMEPI------WDRS-----------MEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1062 n~VI~~Dp~------WNP~-----------~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
.+|| |+- |||. .-..|.-|++|-|.+.+=..|||++++..+
T Consensus 333 r~VI--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 333 RYVI--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred EEEe--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 8886 433 4444 223466666677777788999999987665
No 221
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=69.54 E-value=5.8 Score=53.41 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCceeccCCCCchhHHHHHHHHhh------CCCcccCCc-ccccccee
Q 001095 225 HGGMFCDEPGLGKTITALSLILKT------QGTLADPPD-GVKIIWCT 265 (1158)
Q Consensus 225 ~GGILaDeMGLGKTl~~LalI~~~------~~~~~~~P~-~~~~~W~~ 265 (1158)
++++++---|-|||.+++++|... +..+..+|. .|..||..
T Consensus 434 r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 434 REILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHH
Confidence 468888889999999999987532 223344443 35566664
No 222
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.40 E-value=9.8 Score=45.79 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=77.6
Q ss_pred CCCCeEEEEeccHHHHHHHHHHH----HHCCC----eEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCccc
Q 001095 989 ALPDKVIIFSQFLEHIHVIEQQL----TVAGI----KFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSF 1060 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L----~~~gi----~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~ 1060 (1158)
..+-+.|-|+..+.+-+++-... .+.|- ....+.|+-.+++|.++-...-. .+..-+|+|-|.-.|+++-.
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 523 QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-CeeeEEEecchhhhcccccc
Confidence 36779999999998866654333 22222 14557788888999888655443 35667788999999999999
Q ss_pred CCEEEEECCCCCcChHHHHHhcccccCCC
Q 001095 1061 VTRVFLMEPIWDRSMEEQVISRAHRMGAT 1089 (1158)
Q Consensus 1061 An~VI~~Dp~WNP~~e~QAigRahRiGQ~ 1089 (1158)
-+.|+.+-.+.+-+...|-.||++|-...
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCC
Confidence 99999999999999999999999997643
No 223
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=67.92 E-value=15 Score=46.07 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=32.1
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
..+++||+|||-++-.. .....+..++...|++|.|=|-|=.
T Consensus 258 l~~dvlIiDEaSMvd~~----l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 258 LPLDVLVVDEASMVDLP----LMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred CcccEEEEcccccCCHH----HHHHHHHhcCCCCEEEEECChhhCC
Confidence 46899999999999853 2233455677888999999887754
No 224
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=67.82 E-value=2.5 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.715 Sum_probs=25.6
Q ss_pred cCCCCceeeccchhhhhhcccccccC-----CCccceec
Q 001095 429 FACNETWVQCDACHKWRKLLDASVAD-----ATAAWFCS 462 (1158)
Q Consensus 429 ~~~~~~wvqc~~c~kwr~~~~~~~~~-----~~~~w~c~ 462 (1158)
...++.|||||.|..|-+......+. ....|+|.
T Consensus 8 ~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 8 SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 34578999999999999998865431 13389984
No 225
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=67.67 E-value=7.3 Score=49.46 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.3
Q ss_pred CcccchHHHHHHHHh-----cCCEEEEECccc-HHHHHHHHHhh
Q 001095 598 RLALCEPLDSVRLYL-----SRATLIVVPSYL-VDHWKTQIQQH 635 (1158)
Q Consensus 598 ~mGLGKTlqaiall~-----s~~tLIVvP~sL-l~qW~~Ei~k~ 635 (1158)
..|.|||-++.+++. ..++|+++|++. +++-.+.+.+.
T Consensus 181 pPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 181 PPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 489999987777653 268999999874 67888888764
No 226
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=65.20 E-value=4.1 Score=46.71 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=56.1
Q ss_pred CCE-EEEECcc-cHHHHHHHHHhhcCC------CCeEEEEecCCCC--cccccccCCCCEEEeechhhhhhhhcCCCCCc
Q 001095 614 RAT-LIVVPSY-LVDHWKTQIQQHVRP------GQLHLFVWTDHKK--PSAHSLAWDYDVVITTFNRLSAEWGRRKKSPM 683 (1158)
Q Consensus 614 ~~t-LIVvP~s-Ll~qW~~Ei~k~~~~------~~l~v~v~~g~~~--~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L 683 (1158)
+|. |||||+. |..|-.+-+..++.. ..++....-|.-. ...........||+.|-..|...+.++.. .|
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~-sL 324 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM-SL 324 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc-cH
Confidence 554 9999986 445554444444321 1233333222211 11222234678999999888755432211 11
Q ss_pred ccccceEEEEccccccCCCchHHHHHHHHHHcccC-eEEEEeCCC
Q 001095 684 MQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLLTGTP 727 (1158)
Q Consensus 684 ~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~-~RwlLTGTP 727 (1158)
. --.++.+|||.++-.-.-.-.........++. ..++.|+|-
T Consensus 325 d--~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM 367 (610)
T KOG0341|consen 325 D--ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM 367 (610)
T ss_pred H--HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc
Confidence 1 22468999999986432111111112223433 467888884
No 227
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=65.20 E-value=20 Score=46.25 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=31.6
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
...++||+|||+++... .....+..+....|++|-|=|-|-.
T Consensus 415 ~~~~llIvDEaSMvd~~----~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTW----LALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred ccCCEEEEeccccCCHH----HHHHHHHhCCCCCEEEEECcccccc
Confidence 45689999999999753 2233455677788999999888865
No 228
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=63.05 E-value=43 Score=41.66 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=74.2
Q ss_pred cccccCCCCeEEEEeccHHHHHHHHHHHHHC---------CCeEEEEeCCCCHHHHHHHHHHhccCCC--eeEEEEeCcc
Q 001095 984 LESNKALPDKVIIFSQFLEHIHVIEQQLTVA---------GIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDGSA 1052 (1158)
Q Consensus 984 ~~~~~~~~~KVLVFSqf~~~ld~L~~~L~~~---------gi~~~~ldG~t~~~~R~~~i~~F~~~~~--~~VLL~s~ag 1052 (1158)
.+....+..-+|||---.+-+...++.|... .+-.+-|+.+.|.+...++ |...|. -+|+|+|-.+
T Consensus 466 qIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIA 542 (902)
T KOG0923|consen 466 QIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIA 542 (902)
T ss_pred eeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecch
Confidence 3335667788999987777666666666542 2346778888887765554 665443 6788888777
Q ss_pred ccccCcccCCEEEEECCC------CCcC--------------hHHHHHhcccccCCCCcEEEEEEEeCCC
Q 001095 1053 SLGLDLSFVTRVFLMEPI------WDRS--------------MEEQVISRAHRMGATRPIHVETLAMRGT 1102 (1158)
Q Consensus 1053 g~GLNLt~An~VI~~Dp~------WNP~--------------~e~QAigRahRiGQ~k~V~V~rLi~~~T 1102 (1158)
-..|+.-+.++|| ||. +||. .-.|+-||++|.| |-.-|||++.-+
T Consensus 543 ETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~a 607 (902)
T KOG0923|consen 543 ETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAWA 607 (902)
T ss_pred hhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechhh
Confidence 7778777777775 666 4444 3345555555554 667889988543
No 229
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=62.56 E-value=11 Score=40.51 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=34.1
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccc--cceEEEEccccccCCCchHHHHHHHHHH-cccCeEEEEeCCCCCCC
Q 001095 660 DYDVVITTFNRLSAEWGRRKKSPMMQV--HWLRVMLDEGHTLGSSLNLTNKLQMAIS-LTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~--~w~rVIlDEAH~ikn~~s~t~~~~~~~~-L~a~~RwlLTGTPiqN~ 731 (1158)
.++||++|-..... ..+... .|+.||+|||-.+.-. .++.. ..+..+++|-|=|-|=.
T Consensus 170 ~~~vi~~T~~~~~~-------~~~~~~~~~~d~vIvDEAsq~~e~-------~~l~~l~~~~~~~vlvGD~~QLp 230 (236)
T PF13086_consen 170 EADVIFTTLSSAAS-------PFLSNFKEKFDVVIVDEASQITEP-------EALIPLSRAPKRIVLVGDPKQLP 230 (236)
T ss_dssp T-SEEEEETCGGG--------CCGTT-----SEEEETTGGGS-HH-------HHHHHHTTTBSEEEEEE-TTS--
T ss_pred cccccccccccchh-------hHhhhhcccCCEEEEeCCCCcchH-------HHHHHHHHhCCEEEEECChhhcC
Confidence 67899999877742 233334 8999999999887532 12222 34448999999887755
No 230
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=61.41 E-value=15 Score=46.75 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHh--cCCEEEEECc-ccHHHHHHHHHhhcCCC
Q 001095 599 LALCEPLDSVRLYL--SRATLIVVPS-YLVDHWKTQIQQHVRPG 639 (1158)
Q Consensus 599 mGLGKTlqaiall~--s~~tLIVvP~-sLl~qW~~Ei~k~~~~~ 639 (1158)
.|.|||..+..++. .+|+|||+|. .+..||.+|++.|++..
T Consensus 38 tgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 38 TGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred CCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 78999999888875 4899999995 57789999999999864
No 231
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=61.39 E-value=11 Score=42.06 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=24.0
Q ss_pred eEEEEccccccCCCc----hHHHHHHHHHH---cccCeEEEEeCCCCCCC
Q 001095 689 LRVMLDEGHTLGSSL----NLTNKLQMAIS---LTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 689 ~rVIlDEAH~ikn~~----s~t~~~~~~~~---L~a~~RwlLTGTPiqN~ 731 (1158)
..+++||+|.+.... ........+.. .....+++++|+|-..+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 489999999986311 11111111222 23445788999885543
No 232
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=59.96 E-value=29 Score=44.88 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=69.3
Q ss_pred cccchHHHHHHHHh-----cCCEEEEECcc-cHHHHHHHHHhhcCCCCeEEEEecCCCC--c--------------cc--
Q 001095 599 LALCEPLDSVRLYL-----SRATLIVVPSY-LVDHWKTQIQQHVRPGQLHLFVWTDHKK--P--------------SA-- 654 (1158)
Q Consensus 599 mGLGKTlqaiall~-----s~~tLIVvP~s-Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~--~--------------~~-- 654 (1158)
.|.|||-+...++. .+.+|+.+=.+ .++|-.--+..+- +.++-.....+ + ..
T Consensus 694 PGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~ 769 (1100)
T KOG1805|consen 694 PGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYAD 769 (1100)
T ss_pred CCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHH
Confidence 69999977666542 37888888865 5788776666653 22221111111 0 00
Q ss_pred -ccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 655 -HSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 655 -~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
.....+..||.+|---+. ...+..-+||++|+|||-.|--+. .+--|...++.+|-|-+.|=.
T Consensus 770 l~~~~~~~~IVa~TClgi~-------~plf~~R~FD~cIiDEASQI~lP~-------~LgPL~~s~kFVLVGDh~QLp 833 (1100)
T KOG1805|consen 770 LKKFLDQTSIVACTCLGIN-------HPLFVNRQFDYCIIDEASQILLPL-------CLGPLSFSNKFVLVGDHYQLP 833 (1100)
T ss_pred HHHHhCCCcEEEEEccCCC-------chhhhccccCEEEEccccccccch-------hhhhhhhcceEEEecccccCC
Confidence 111223345555532221 244556679999999999887653 344566778899999877755
No 233
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=59.52 E-value=9.6 Score=44.07 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=29.8
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
++=..||+||||++--..-+| .+.+.-...+++|||-|.|-+
T Consensus 350 l~~~FiIIDEaQNLTpheikT----iltR~G~GsKIVl~gd~aQiD 391 (436)
T COG1875 350 LPDSFIIIDEAQNLTPHELKT----ILTRAGEGSKIVLTGDPAQID 391 (436)
T ss_pred cccceEEEehhhccCHHHHHH----HHHhccCCCEEEEcCCHHHcC
Confidence 344679999999997432111 344556677999999999976
No 234
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=59.02 E-value=9 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=22.0
Q ss_pred ccccccccCC-CceeEEecccccccccCC
Q 001095 191 PLYIDLATED-GFYFYVNTVSGDIATGTA 218 (1158)
Q Consensus 191 ~~~~~~~~~~-~~~~y~~~~~~~~~~~~~ 218 (1158)
+-|....+.+ |+.+|+|..++..+...|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 4587777655 999999999998877654
No 235
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=58.36 E-value=9.4 Score=37.26 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=25.0
Q ss_pred eEEEEccccccCCCchHHHHHHHHHHc--ccCeEEEEeCCC
Q 001095 689 LRVMLDEGHTLGSSLNLTNKLQMAISL--TASNRWLLTGTP 727 (1158)
Q Consensus 689 ~rVIlDEAH~ikn~~s~t~~~~~~~~L--~a~~RwlLTGTP 727 (1158)
.+||+||+|.+. . ...+..++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~-~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF-S---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH-T---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC-C---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999993 1 2333444444 566789999999
No 236
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=58.30 E-value=2.3 Score=34.01 Aligned_cols=37 Identities=38% Similarity=0.658 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHhhcCCCcHHHHHHHhhhhhhcccc
Q 001095 122 ISDIADDIVISILTRLGPIDLVRIAATCRHLRCLAAS 158 (1158)
Q Consensus 122 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (1158)
+.+||+|++.+|+.+++..++..+...|+.++.....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 4579999999999999999999999999988775443
No 237
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=57.63 E-value=28 Score=43.97 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=33.2
Q ss_pred cccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 685 QVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 685 ~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
...+++||+|||.++-.. .-+..+..++...|++|-|=|-|-.
T Consensus 263 ~l~~dvlIvDEaSMvd~~----lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 263 PLHLDVLVVDEASMVDLP----MMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred CCCCCeEEEChHhcccHH----HHHHHHHhcccCCEEEEecchhhcC
Confidence 346799999999999753 2234566788889999999988854
No 238
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=57.46 E-value=8.8 Score=29.14 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhhcCCCcHHHHHHHhhhhhhccc
Q 001095 125 IADDIVISILTRLGPIDLVRIAATCRHLRCLAA 157 (1158)
Q Consensus 125 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 157 (1158)
+|++++..|+.+++..|+.++...|+.++....
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999998877543
No 239
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=55.61 E-value=19 Score=39.07 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=29.0
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
...+.+|+||++.+-.. ....+..+.....+++-|=|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~g-----~l~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPG-----YLLLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCChH-----HHHHHHhhccCcceEEEECchhcc
Confidence 45889999999998742 122344444445788889999976
No 240
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.30 E-value=5.7 Score=51.19 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
...||||.+|+.|-....++ ..-....-..||+||||+|-+
T Consensus 194 ~~advIi~pYnyl~dp~~r~--~~~~~l~~~ivI~DEAHNL~d 234 (705)
T TIGR00604 194 PFANIVLLPYQYLLDPKIRS--AVSIELKDSIVIFDEAHNLDN 234 (705)
T ss_pred hcCCEEEechHHhcCHHHHH--HhhcccccCEEEEECccchHH
Confidence 47899999999886432211 111223447899999999975
No 241
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=54.11 E-value=8.3 Score=51.29 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=29.5
Q ss_pred CCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 659 WDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
...|||||++..|.++.... ...| ..++.+|+||||++-.
T Consensus 430 ~~AdivItNHalLl~dl~~~-~~il--p~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHALLLTDLTSE-EPLL--PSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHHHHHHHhhh-cccC--CCCCeEEEECCchHHH
Confidence 46899999999998775321 1222 3478999999999974
No 242
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=52.77 E-value=19 Score=46.40 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=77.5
Q ss_pred cccchHHHHHHHH-------hcCCEEEEEC-cccHHHHHHHHHhhcCCCCe-EEE-EecCCCCcccccccCCCCEEEeec
Q 001095 599 LALCEPLDSVRLY-------LSRATLIVVP-SYLVDHWKTQIQQHVRPGQL-HLF-VWTDHKKPSAHSLAWDYDVVITTF 668 (1158)
Q Consensus 599 mGLGKTlqaiall-------~s~~tLIVvP-~sLl~qW~~Ei~k~~~~~~l-~v~-v~~g~~~~~~~~l~~~~DVVItTY 668 (1158)
.-.|||...--.+ .++-++-|+| ++|+.|=..++.--+....+ +.. .+..-.+..... .+...|.||--
T Consensus 535 TSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin-p~nCQVLITvP 613 (1330)
T KOG0949|consen 535 TSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN-PWNCQVLITVP 613 (1330)
T ss_pred ccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC-chhceEEEEch
Confidence 5679996543322 2478888999 57888888777665532111 111 111111111111 34778999988
Q ss_pred hhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhh
Q 001095 669 NRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLK 744 (1158)
Q Consensus 669 ~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~ 744 (1158)
+.+.+.+-......-.--+-.+||+||.|.|+|..- ......+..+-..--++||+| +++ +..++..++
T Consensus 614 ecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed-~l~~Eqll~li~CP~L~LSAT--igN----~~l~qkWln 682 (1330)
T KOG0949|consen 614 ECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEED-GLLWEQLLLLIPCPFLVLSAT--IGN----PNLFQKWLN 682 (1330)
T ss_pred HHHHHHhcCchhhhhhhhcceEEEechhhhcccccc-chHHHHHHHhcCCCeeEEecc--cCC----HHHHHHHHH
Confidence 877654322111111123457899999999998652 222233334445556889999 444 556666665
No 243
>PRK14873 primosome assembly protein PriA; Provisional
Probab=52.62 E-value=68 Score=41.00 Aligned_cols=76 Identities=9% Similarity=0.028 Sum_probs=46.8
Q ss_pred HHHHHHHHC--CCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeC----ccccccCcccCCEEEEECCC-------CC
Q 001095 1006 VIEQQLTVA--GIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG----SASLGLDLSFVTRVFLMEPI-------WD 1072 (1158)
Q Consensus 1006 ~L~~~L~~~--gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~----agg~GLNLt~An~VI~~Dp~-------WN 1072 (1158)
.+++.|.+. +.++.++|++ .+++.|.. ...|||.|. ...-|+ +-|+++|.+ +.
T Consensus 442 r~eeeL~~~FP~~~V~r~d~d-------~~l~~~~~--~~~IlVGTqgaepm~~g~~-----~lV~ildaD~~L~~pDfR 507 (665)
T PRK14873 442 RTAEELGRAFPGVPVVTSGGD-------QVVDTVDA--GPALVVATPGAEPRVEGGY-----GAALLLDAWALLGRQDLR 507 (665)
T ss_pred HHHHHHHHHCCCCCEEEEChH-------HHHHhhcc--CCCEEEECCCCcccccCCc-----eEEEEEcchhhhcCCCcC
Confidence 444455443 5666777653 47889963 678999996 333233 445555543 33
Q ss_pred c-----ChHHHHHhcccccCCCCcEEEE
Q 001095 1073 R-----SMEEQVISRAHRMGATRPIHVE 1095 (1158)
Q Consensus 1073 P-----~~e~QAigRahRiGQ~k~V~V~ 1095 (1158)
- ....|+.||++|-+..-.|.|-
T Consensus 508 A~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 508 AAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 2 2457999999997666666664
No 244
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=50.64 E-value=54 Score=31.71 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=26.1
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHc------ccCeEEEEeCCCCCC
Q 001095 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISL------TASNRWLLTGTPTPN 730 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L------~a~~RwlLTGTPiqN 730 (1158)
....+|+||++.+... ........+..+ ....++++|+++...
T Consensus 84 ~~~~lilDe~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 84 KPGVLFIDEIDSLSRG-AQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCeEEEEeChhhhhHH-HHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 4568999999998321 112223333333 246678888887764
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=48.31 E-value=28 Score=38.34 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=23.1
Q ss_pred ceEEEEccccccCCCch-HHHHHHHHHHcc-c-CeEEEEeCC
Q 001095 688 WLRVMLDEGHTLGSSLN-LTNKLQMAISLT-A-SNRWLLTGT 726 (1158)
Q Consensus 688 w~rVIlDEAH~ikn~~s-~t~~~~~~~~L~-a-~~RwlLTGT 726 (1158)
.++||+||.|.+..... ....+.....+. . +.++++||+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 36899999999975321 112222332322 2 347899998
No 246
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=47.68 E-value=86 Score=28.82 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=39.5
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe
Q 001095 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s 1049 (1158)
.+++|+||+. +=..-..+.+.|+..|++|..++=....+-|+.+.+.-....-+.|++-.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g 71 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNG 71 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECC
Confidence 4589999987 44567788889999999999888544544444444433323234555543
No 247
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=46.78 E-value=41 Score=44.76 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=73.1
Q ss_pred ccccccccCCCcEEeecccCCcccchHHHHHHHHhc----CCEEEEECcccH-----HHHHHHHHhhcCCCCeEEEEecC
Q 001095 578 ITRWYYPKTLDNLAFDLAALRLALCEPLDSVRLYLS----RATLIVVPSYLV-----DHWKTQIQQHVRPGQLHLFVWTD 648 (1158)
Q Consensus 578 ~~~~l~~~~~ggILaDelad~mGLGKTlqaiall~s----~~tLIVvP~sLl-----~qW~~Ei~k~~~~~~l~v~v~~g 648 (1158)
+...+|..+.+-+++- ..|.|||+.+--.++. +...-|.|...+ .-|..-|.+-.+ +++.-..|
T Consensus 1151 Vf~~~y~~nd~v~vga----~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G---~~~~~l~g 1223 (1674)
T KOG0951|consen 1151 VFTSLYNTNDNVLVGA----PNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG---LRIVKLTG 1223 (1674)
T ss_pred EEeeeecccceEEEec----CCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccC---ceEEecCC
Confidence 3444566666666554 6999999877544432 567888897754 568888887643 66666666
Q ss_pred CCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCCCc
Q 001095 649 HKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSL 703 (1158)
Q Consensus 649 ~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~ 703 (1158)
........+ ...+|+|.|.+.+..- . .-..-++.|+||.|.|+...
T Consensus 1224 e~s~~lkl~-~~~~vii~tpe~~d~l------q--~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1224 ETSLDLKLL-QKGQVIISTPEQWDLL------Q--SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred ccccchHHh-hhcceEEechhHHHHH------h--hhhhcceEeeehhhhhcccC
Confidence 555444433 4889999998876532 1 22234678999999998643
No 248
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=46.39 E-value=58 Score=34.75 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=19.0
Q ss_pred CcccchHHHHHHHH-----hcCCEEEEECcc
Q 001095 598 RLALCEPLDSVRLY-----LSRATLIVVPSY 623 (1158)
Q Consensus 598 ~mGLGKTlqaiall-----~s~~tLIVvP~s 623 (1158)
.|..|||...|... ...+++|..|..
T Consensus 12 pM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 12 PMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred cCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 49999998777653 236888888863
No 249
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=45.96 E-value=52 Score=31.42 Aligned_cols=34 Identities=6% Similarity=-0.086 Sum_probs=22.5
Q ss_pred CcccchHHHHHHHHhc--C---CEEEEECcccHHHHHHH
Q 001095 598 RLALCEPLDSVRLYLS--R---ATLIVVPSYLVDHWKTQ 631 (1158)
Q Consensus 598 ~mGLGKTlqaiall~s--~---~tLIVvP~sLl~qW~~E 631 (1158)
..|.|||..+..+... . ..+.+.+......+..+
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 10 PPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHH
Confidence 4899999888776532 2 47777777655554443
No 250
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=45.06 E-value=84 Score=29.49 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=42.8
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe
Q 001095 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s 1049 (1158)
..++|+||+. +=..-..+.+.|...|++|..++=....+.|+.+.+......-+.|++-.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g 75 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKG 75 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECC
Confidence 5589999975 33456678889999999999888655566677766665544445666654
No 251
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=44.94 E-value=48 Score=38.15 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=76.0
Q ss_pred CcccchHH--HHHHHHhcCCEEEEECc-ccHHHHHHHHHhhcCCCCeEEEEecCC-CCc---ccc----cccCCCCEEEe
Q 001095 598 RLALCEPL--DSVRLYLSRATLIVVPS-YLVDHWKTQIQQHVRPGQLHLFVWTDH-KKP---SAH----SLAWDYDVVIT 666 (1158)
Q Consensus 598 ~mGLGKTl--qaiall~s~~tLIVvP~-sLl~qW~~Ei~k~~~~~~l~v~v~~g~-~~~---~~~----~l~~~~DVVIt 666 (1158)
..|-||.+ |.-++...+-+|||||. +|++.=.-.++.. + +..-..... .+. ..+ .....+..+-+
T Consensus 117 ~tgggkslcyqlpal~adg~alvi~plislmedqil~lkql-g---i~as~lnansske~~k~v~~~i~nkdse~kliyv 192 (695)
T KOG0353|consen 117 PTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQL-G---IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYV 192 (695)
T ss_pred eCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHh-C---cchhhccCcccHHHHHHHHHHHcCCCceeEEEEe
Confidence 47889985 55677778999999995 5665444444443 2 111111111 111 111 11124556666
Q ss_pred echhhhhhhh--cCCCCCcccccceEEEEccccccCCC----chHHHHH-HHHHHcccCeEEEEeCCCCCCCccchhhhh
Q 001095 667 TFNRLSAEWG--RRKKSPMMQVHWLRVMLDEGHTLGSS----LNLTNKL-QMAISLTASNRWLLTGTPTPNTPNSQLSHL 739 (1158)
Q Consensus 667 TY~~L~~e~~--~~~~~~L~~~~w~rVIlDEAH~ikn~----~s~t~~~-~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL 739 (1158)
|-+-+...-. .+....+..-.|.++-+||.|-...- ..-...+ ..-+..+.-..+.||+|-..+- +.|.
T Consensus 193 tpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~v----l~d~ 268 (695)
T KOG0353|consen 193 TPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHV----LDDA 268 (695)
T ss_pred cHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcch----hhHH
Confidence 6666543210 11123345567889999999875321 0101111 1223455666899999999998 7776
Q ss_pred HHHhh
Q 001095 740 QPMLK 744 (1158)
Q Consensus 740 ~sLl~ 744 (1158)
..+|-
T Consensus 269 k~il~ 273 (695)
T KOG0353|consen 269 KDILC 273 (695)
T ss_pred HHHHh
Confidence 66553
No 252
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=44.01 E-value=1.1e+02 Score=38.63 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=19.5
Q ss_pred CCCCcccccceEEEEccccccCC
Q 001095 679 KKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 679 ~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
....++...|+++|+||||.|+.
T Consensus 344 ntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 344 NTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred CCCCccCCcccEEEEechhhCCH
Confidence 34567788999999999999995
No 253
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=43.52 E-value=77 Score=34.15 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=25.0
Q ss_pred eEEEEccccccCCCch-HHHHHHHHHHc-ccCeEEEEeCCCCCCC
Q 001095 689 LRVMLDEGHTLGSSLN-LTNKLQMAISL-TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 689 ~rVIlDEAH~ikn~~s-~t~~~~~~~~L-~a~~RwlLTGTPiqN~ 731 (1158)
+.||+||+|.+..... .......+..+ ....++++|+|+..+.
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~ 136 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQ 136 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHH
Confidence 4799999999975421 22222222222 2345788888865443
No 254
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=43.48 E-value=15 Score=46.84 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=56.2
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHC-------CCeEEEEeCCCCHHHHHHHHHHhccC-----CCeeEEEEe--Cccc
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVA-------GIKFAGMYSPMHSSNKIKSLDMFRHD-----ASCLALLMD--GSAS 1053 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~-------gi~~~~ldG~t~~~~R~~~i~~F~~~-----~~~~VLL~s--~agg 1053 (1158)
..-.+.+|||-..-.+++-+..+.... +.+- .+.+..+..+=.+++.+|-+. .+..++++- ...+
T Consensus 558 rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS 636 (945)
T KOG1132|consen 558 RVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS 636 (945)
T ss_pred hhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEeccccc
Confidence 334556999988888888886555442 3333 233333444555667777531 122334443 5789
Q ss_pred cccCcc--cCCEEEEECCCCCcChHHH
Q 001095 1054 LGLDLS--FVTRVFLMEPIWDRSMEEQ 1078 (1158)
Q Consensus 1054 ~GLNLt--~An~VI~~Dp~WNP~~e~Q 1078 (1158)
+||++. .+.-||..-.++=|..+.|
T Consensus 637 EGlDFsD~~~RaVI~tGlPyP~~~D~~ 663 (945)
T KOG1132|consen 637 EGLDFSDDNGRAVIITGLPYPPVMDPR 663 (945)
T ss_pred CCCCccccCCceeEEecCCCCCCCCHH
Confidence 999998 6778899988887665443
No 255
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.24 E-value=59 Score=40.59 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=81.4
Q ss_pred cCCCCeEEEEeccH----HHHHHHHHHHHHC------CCeEEEEeCCCCHHHHHHHHHHhccC--CCeeEEEEeCccccc
Q 001095 988 KALPDKVIIFSQFL----EHIHVIEQQLTVA------GIKFAGMYSPMHSSNKIKSLDMFRHD--ASCLALLMDGSASLG 1055 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~----~~ld~L~~~L~~~------gi~~~~ldG~t~~~~R~~~i~~F~~~--~~~~VLL~s~agg~G 1055 (1158)
..+..-+|||-.-. .+.++|.+.|.+. ++.++-|+..+|..-..+ -|+.. +.-+++++|-.+-..
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETS 636 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETS 636 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhc
Confidence 44556788885433 3456666666542 677888999888765444 46632 335788888878888
Q ss_pred cCcccCCEEEEEC----CCCCcC-----------hHHHHHhcccccCCCCcEEEEEEEeCCCHHHHHHH
Q 001095 1056 LDLSFVTRVFLME----PIWDRS-----------MEEQVISRAHRMGATRPIHVETLAMRGTVEEQMLE 1109 (1158)
Q Consensus 1056 LNLt~An~VI~~D----p~WNP~-----------~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~Il~ 1109 (1158)
|+..+-.+||=-- -.+||. .-.||--|++|-|.+.|-.-|||+++++..+.|+.
T Consensus 637 LTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 637 LTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred eeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 8877777776211 124544 34577778888888889999999999998887764
No 256
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=42.45 E-value=26 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.4
Q ss_pred CccccccccCCCceeEEecccccccccCCC
Q 001095 190 HPLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 190 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
++.|....+.+|+.+|+|..++..+...|.
T Consensus 2 p~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 356888888889999999999887777654
No 257
>PRK05642 DNA replication initiation factor; Validated
Probab=41.57 E-value=55 Score=36.03 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=23.6
Q ss_pred ceEEEEccccccCCCch-HHHHHHHHHHcc-cCeEEEEeCC
Q 001095 688 WLRVMLDEGHTLGSSLN-LTNKLQMAISLT-ASNRWLLTGT 726 (1158)
Q Consensus 688 w~rVIlDEAH~ikn~~s-~t~~~~~~~~L~-a~~RwlLTGT 726 (1158)
.+++|+|+.|.+.+... ....+.....+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 36899999999975432 222233332332 3567888887
No 258
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=41.47 E-value=80 Score=39.47 Aligned_cols=130 Identities=14% Similarity=0.122 Sum_probs=69.0
Q ss_pred CcccchHHHHHHHHhc------CCEEEEECc-----ccHHHHHHHHHhhcCCCCeEEEE-ecCCCCcccccccCCCCEEE
Q 001095 598 RLALCEPLDSVRLYLS------RATLIVVPS-----YLVDHWKTQIQQHVRPGQLHLFV-WTDHKKPSAHSLAWDYDVVI 665 (1158)
Q Consensus 598 ~mGLGKTlqaiall~s------~~tLIVvP~-----sLl~qW~~Ei~k~~~~~~l~v~v-~~g~~~~~~~~l~~~~DVVI 665 (1158)
+.|.|||-|.=-++.. +.+-+.=|- +|-.-=.+|..--.+.. .-+.+ |.+.... +--|..
T Consensus 74 eTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~-VGY~IRFed~ts~-------~Triky 145 (674)
T KOG0922|consen 74 ETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE-VGYTIRFEDSTSK-------DTRIKY 145 (674)
T ss_pred CCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCce-eeeEEEecccCCC-------ceeEEE
Confidence 4999999988777642 342222232 23455566666555431 11111 2222111 334667
Q ss_pred eechhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHH----HHHHcccC-eEEEEeCCCCCCCccchhhhhH
Q 001095 666 TTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ----MAISLTAS-NRWLLTGTPTPNTPNSQLSHLQ 740 (1158)
Q Consensus 666 tTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~----~~~~L~a~-~RwlLTGTPiqN~~~~~l~dL~ 740 (1158)
.|-.+|-++.- ..++ --.+..|||||||.=- -+ |.... .+..-+.. +.+++|||-=-.. +++++
T Consensus 146 mTDG~LLRE~l---~Dp~-LskYsvIIlDEAHERs-l~--TDiLlGlLKki~~~R~~LklIimSATlda~k----fS~yF 214 (674)
T KOG0922|consen 146 MTDGMLLREIL---KDPL-LSKYSVIILDEAHERS-LH--TDILLGLLKKILKKRPDLKLIIMSATLDAEK----FSEYF 214 (674)
T ss_pred ecchHHHHHHh---cCCc-cccccEEEEechhhhh-hH--HHHHHHHHHHHHhcCCCceEEEEeeeecHHH----HHHHh
Confidence 78888877632 2222 2367899999999521 11 22221 11122333 5677899966665 77777
Q ss_pred HHhhhc
Q 001095 741 PMLKFL 746 (1158)
Q Consensus 741 sLl~FL 746 (1158)
.-..-+
T Consensus 215 ~~a~i~ 220 (674)
T KOG0922|consen 215 NNAPIL 220 (674)
T ss_pred cCCceE
Confidence 654333
No 259
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=40.92 E-value=29 Score=36.53 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=12.5
Q ss_pred ceEEEEccccccC
Q 001095 688 WLRVMLDEGHTLG 700 (1158)
Q Consensus 688 w~rVIlDEAH~ik 700 (1158)
.+.|++||||.+.
T Consensus 77 ~dvI~IDEaQFf~ 89 (176)
T PF00265_consen 77 YDVIGIDEAQFFD 89 (176)
T ss_dssp CSEEEESSGGGST
T ss_pred CCEEEEechHhhH
Confidence 8899999999998
No 260
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=40.21 E-value=42 Score=42.55 Aligned_cols=93 Identities=10% Similarity=0.133 Sum_probs=54.5
Q ss_pred cEEeecccCCcccchHHHHHHHHhc---------CC-EEEEE-Ccc-----cHHHHHHHHHhhcCCCCeEEEE-ecCCCC
Q 001095 589 NLAFDLAALRLALCEPLDSVRLYLS---------RA-TLIVV-PSY-----LVDHWKTQIQQHVRPGQLHLFV-WTDHKK 651 (1158)
Q Consensus 589 gILaDelad~mGLGKTlqaiall~s---------~~-tLIVv-P~s-----Ll~qW~~Ei~k~~~~~~l~v~v-~~g~~~ 651 (1158)
-|++. +.|.|||-|.=-++.. .+ ++=|+ |-- +..-=..|+..+ +. .+.+.+ |++...
T Consensus 274 vIIcG----eTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~-eVsYqIRfd~ti~ 347 (1172)
T KOG0926|consen 274 VIICG----ETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GS-EVSYQIRFDGTIG 347 (1172)
T ss_pred EEEec----CCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-cc-ceeEEEEeccccC
Confidence 45555 5999999998777641 24 33233 322 224456677773 32 244333 444332
Q ss_pred cccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccc
Q 001095 652 PSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHT 698 (1158)
Q Consensus 652 ~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ 698 (1158)
+ +-.|-.+|-..|.+++. ..+.-..+..|||||||.
T Consensus 348 e-------~T~IkFMTDGVLLrEi~----~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 348 E-------DTSIKFMTDGVLLREIE----NDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred C-------CceeEEecchHHHHHHH----HhHhhhhceeEEechhhh
Confidence 2 33466677777776642 344455778999999996
No 261
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=39.98 E-value=43 Score=40.82 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=70.9
Q ss_pred cccchHHHHHHHHhc-CCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeechhhhhhhhc
Q 001095 599 LALCEPLDSVRLYLS-RATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGR 677 (1158)
Q Consensus 599 mGLGKTlqaiall~s-~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~ 677 (1158)
.-.|||--|+.-+.+ +.-+---|..|+- .|+-..+....+..-.++|..+............|-+|-+++.
T Consensus 200 TNSGKTy~ALqrl~~aksGvycGPLrLLA---~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvScTVEM~s----- 271 (700)
T KOG0953|consen 200 TNSGKTYRALQRLKSAKSGVYCGPLRLLA---HEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSCTVEMVS----- 271 (700)
T ss_pred CCCchhHHHHHHHhhhccceecchHHHHH---HHHHHHhhhcCCCccccccceeeecCCCCCcccceEEEEEEee-----
Confidence 347999999887654 4445555555553 3555555544466666677655443332335677888888876
Q ss_pred CCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCC
Q 001095 678 RKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTP 727 (1158)
Q Consensus 678 ~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTP 727 (1158)
....|++.|+||.|+++.++---+-++++..+.|.-. =|.|-|
T Consensus 272 ------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEi-HLCGep 314 (700)
T KOG0953|consen 272 ------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEI-HLCGEP 314 (700)
T ss_pred ------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhh-hccCCc
Confidence 3567899999999999987532333456666655432 234444
No 262
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.91 E-value=44 Score=36.66 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=69.8
Q ss_pred cccchHHHH-HHHHhc-------CCEEEEECcc-cHHHHHHHHHhhcCC-CCeEEEEecCC-CCccc-ccccCCCCEEEe
Q 001095 599 LALCEPLDS-VRLYLS-------RATLIVVPSY-LVDHWKTQIQQHVRP-GQLHLFVWTDH-KKPSA-HSLAWDYDVVIT 666 (1158)
Q Consensus 599 mGLGKTlqa-iall~s-------~~tLIVvP~s-Ll~qW~~Ei~k~~~~-~~l~v~v~~g~-~~~~~-~~l~~~~DVVIt 666 (1158)
-|+|||..- ++.+.. -.+||+|-.. |.-|-.+|..+|... ...++.++.|. .-... ..+.....||+-
T Consensus 88 sgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVg 167 (387)
T KOG0329|consen 88 SGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVG 167 (387)
T ss_pred cCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEc
Confidence 689999432 222211 2578888865 678999998877531 23677776553 22222 223346789999
Q ss_pred echhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcc--cCeEEEEeCC
Q 001095 667 TFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLT--ASNRWLLTGT 726 (1158)
Q Consensus 667 TY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~--a~~RwlLTGT 726 (1158)
|-..+..-.+.+. |.--+-.-.||||+..+-..-....-.+-+.++. -+.....|+|
T Consensus 168 TPGrilALvr~k~---l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329|consen 168 TPGRILALVRNRS---LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred CcHHHHHHHHhcc---CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeee
Confidence 9888775544222 2223344579999997654322233333443332 2334555555
No 263
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.75 E-value=15 Score=46.22 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=27.8
Q ss_pred hhhcCCCcc-----------chhhhhhhhc--cccCCCCCCCCCcccccCC
Q 001095 901 NLLNGGNCL-----------RHILCLDCVA--MDSEKCSLPGCGFLYEMQS 938 (1158)
Q Consensus 901 ~l~~~~~c~-----------~h~~C~~c~~--~~~~~~~~p~C~~~~~~~~ 938 (1158)
.+..|..|. +|.||..|+. ...+.-.||.|+.+|...+
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 345677776 9999999997 3445556789999876543
No 264
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=39.46 E-value=11 Score=42.54 Aligned_cols=30 Identities=20% Similarity=0.735 Sum_probs=23.7
Q ss_pred CCceeeccc--hh-hhhhcccccc--cCCCccceec
Q 001095 432 NETWVQCDA--CH-KWRKLLDASV--ADATAAWFCS 462 (1158)
Q Consensus 432 ~~~wvqc~~--c~-kwr~~~~~~~--~~~~~~w~c~ 462 (1158)
.+.-|.||. |. .|=+++|... ++.+. |||.
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVGL~~~Pkgk-WyC~ 263 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVGLKTKPKGK-WYCP 263 (274)
T ss_pred cccccccCCCCCCcceEEEeccccccCCCCc-ccch
Confidence 556799996 99 9999999776 34444 9994
No 265
>CHL00181 cbbX CbbX; Provisional
Probab=39.44 E-value=30 Score=39.36 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=10.0
Q ss_pred eEEEEcccccc
Q 001095 689 LRVMLDEGHTL 699 (1158)
Q Consensus 689 ~rVIlDEAH~i 699 (1158)
..+++||+|.+
T Consensus 124 gVLfIDE~~~l 134 (287)
T CHL00181 124 GVLFIDEAYYL 134 (287)
T ss_pred CEEEEEccchh
Confidence 58999999998
No 266
>PRK04132 replication factor C small subunit; Provisional
Probab=37.52 E-value=1.1e+02 Score=40.04 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=36.4
Q ss_pred ccceEEEEccccccCCCchHHHHH-HHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKL-QMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYG 752 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~-~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~ 752 (1158)
..|..||+||+|++-.. . .+.+ ..+-.-....+++|+.++...= +.-|.+-+..+.-.++.
T Consensus 629 ~~~KVvIIDEaD~Lt~~-A-QnALLk~lEep~~~~~FILi~N~~~kI----i~tIrSRC~~i~F~~ls 690 (846)
T PRK04132 629 ASFKIIFLDEADALTQD-A-QQALRRTMEMFSSNVRFILSCNYSSKI----IEPIQSRCAIFRFRPLR 690 (846)
T ss_pred CCCEEEEEECcccCCHH-H-HHHHHHHhhCCCCCeEEEEEeCChhhC----chHHhhhceEEeCCCCC
Confidence 35789999999999631 1 2221 1121223567899998877655 44555555555444444
No 267
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=36.32 E-value=56 Score=39.75 Aligned_cols=40 Identities=5% Similarity=0.028 Sum_probs=22.9
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHc-ccCeEEEEeCC
Q 001095 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISL-TASNRWLLTGT 726 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L-~a~~RwlLTGT 726 (1158)
..+++|+||+|.+.+... ....+.....+ .....+++|+.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 457899999999986432 11222222222 23346888854
No 268
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=34.66 E-value=41 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=23.0
Q ss_pred ccccccccCCCceeEEecccccccccCCC
Q 001095 191 PLYIDLATEDGFYFYVNTVSGDIATGTAP 219 (1158)
Q Consensus 191 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (1158)
+.|....+.+|+.+|+|..++..+...|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 35777777789999999999887776653
No 269
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=34.54 E-value=28 Score=44.48 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=28.3
Q ss_pred CCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 660 DYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 660 ~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
..|++|+++..+............ -..-..||+||||++-+
T Consensus 194 ~ad~vv~nh~~~~~~~~~~~~~~~-~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 194 NADLVVTNHALLLADVALEESRIL-LPENDVVVFDEAHNLPD 234 (654)
T ss_pred hCCEEEEccHHHHhHHHhhhhhcc-CCcccEEEEeccccchH
Confidence 789999999998855321111111 23467899999999975
No 270
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=34.17 E-value=1.4e+02 Score=37.39 Aligned_cols=124 Identities=10% Similarity=-0.004 Sum_probs=70.6
Q ss_pred cccchHHHHHHHHh------cCCEEEEECcc-cHHHHH-HHHHhhcCC-CCeEEEEecC----CCCcccccccCCCCEEE
Q 001095 599 LALCEPLDSVRLYL------SRATLIVVPSY-LVDHWK-TQIQQHVRP-GQLHLFVWTD----HKKPSAHSLAWDYDVVI 665 (1158)
Q Consensus 599 mGLGKTlqaiall~------s~~tLIVvP~s-Ll~qW~-~Ei~k~~~~-~~l~v~v~~g----~~~~~~~~l~~~~DVVI 665 (1158)
.-+|||..++..+. ..|+|+|-|.- ....|. +.|...+.. ..++-.+... .........+....+.+
T Consensus 42 aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~ 121 (557)
T PF05876_consen 42 AQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYL 121 (557)
T ss_pred chhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEE
Confidence 34799987666653 37999999974 677776 445555431 1232222220 11111111122333555
Q ss_pred eechhhhhhhhcCCCCCcccccceEEEEccccccCC----CchHHHHH-HHHHHcccCeEEEEeCCCCCCC
Q 001095 666 TTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS----SLNLTNKL-QMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 666 tTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn----~~s~t~~~-~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
+.. ...+.|....-.+|++||....-. ..+....+ ..........++++..||....
T Consensus 122 ~ga---------~S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~ 183 (557)
T PF05876_consen 122 VGA---------NSPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEG 183 (557)
T ss_pred EeC---------CCCcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCC
Confidence 544 335678889999999999998831 11111111 1222334677999999999886
No 271
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.14 E-value=34 Score=34.28 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=32.2
Q ss_pred cCCccccccc-cCCCceeEEecccccccccCCCCccCCCCceeccC
Q 001095 188 LRHPLYIDLA-TEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDE 232 (1158)
Q Consensus 188 ~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDe 232 (1158)
.+++-|+... -..|+++|||..|+.-+++.|.......|++..++
T Consensus 6 ~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~~~~~~~ 51 (163)
T KOG3259|consen 6 KLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGGKIGQGE 51 (163)
T ss_pred cCCchhheeccccCCCcceeccccchhhccCCCccccccccccCCC
Confidence 4556676544 56789999999999999999876654445444443
No 272
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=33.45 E-value=45 Score=37.81 Aligned_cols=108 Identities=11% Similarity=-0.013 Sum_probs=60.8
Q ss_pred cEEeecccCCcccchHHHHHHHHhcCCEEEEECcccHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEeec
Q 001095 589 NLAFDLAALRLALCEPLDSVRLYLSRATLIVVPSYLVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVITTF 668 (1158)
Q Consensus 589 gILaDelad~mGLGKTlqaiall~s~~tLIVvP~sLl~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVItTY 668 (1158)
|-+.+..| .-|+|||-++..+..+.|.-++.+++=...=..++..-+. +....++
T Consensus 94 g~l~~vyg-~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i~~------------------------~~~~~~~ 148 (297)
T COG2842 94 GSLVVVYG-YAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILIICA------------------------AAFGATD 148 (297)
T ss_pred CceEEEec-cccchhHHHHHhhcccCccceeecCChhhHHHHHHHHHHH------------------------HHhcccc
Confidence 44555433 3699999998888888777666666655444444444331 1111222
Q ss_pred hhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccC--eEEEEeCCCC
Q 001095 669 NRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS--NRWLLTGTPT 728 (1158)
Q Consensus 669 ~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~--~RwlLTGTPi 728 (1158)
..+...... .... ..-.-.+||+|||.++. ...+..++.+..+ --+.|.|+|-
T Consensus 149 ~~~~d~~~~-~~~~-l~~~~~~iivDEA~~L~-----~~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 149 GTINDLTER-LMIR-LRDTVRLIIVDEADRLP-----YRALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred hhHHHHHHH-HHHH-HccCcceeeeehhhccC-----hHHHHHHHHHHHhhCceEEEecChH
Confidence 222111000 0001 13345689999999998 3446667766544 3577888875
No 273
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=33.18 E-value=1.9e+02 Score=29.21 Aligned_cols=86 Identities=20% Similarity=0.133 Sum_probs=55.8
Q ss_pred eEEEEeccHHHHHHHHHHHHHCCCeE--EEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECCC
Q 001095 993 KVIIFSQFLEHIHVIEQQLTVAGIKF--AGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEPI 1070 (1158)
Q Consensus 993 KVLVFSqf~~~ld~L~~~L~~~gi~~--~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp~ 1070 (1158)
.|=++||.-.+...+-..+...|+.+ ..=.|+...-.-.+.++.|.+|+..++++ +++|..
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~-----------------ly~E~~ 65 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIV-----------------LYLEGI 65 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEE-----------------EEES--
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEE-----------------EEccCC
Confidence 56789999999999999999887664 44456554456678999999999887775 455666
Q ss_pred CCcChHHHHHhcccccCCCCcEEEEEEE
Q 001095 1071 WDRSMEEQVISRAHRMGATRPIHVETLA 1098 (1158)
Q Consensus 1071 WNP~~e~QAigRahRiGQ~k~V~V~rLi 1098 (1158)
=||....++..|+.|. |||.+++-=
T Consensus 66 ~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 66 GDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 6787778888777764 999887643
No 274
>PRK06893 DNA replication initiation factor; Validated
Probab=32.56 E-value=1e+02 Score=33.64 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=24.0
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHccc-Ce-EEEEeCCCCCCC
Q 001095 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISLTA-SN-RWLLTGTPTPNT 731 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L~a-~~-RwlLTGTPiqN~ 731 (1158)
..+.+|+||.|.+.+... ....+..+..+.. .. .+++|++-.+..
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 347899999999864321 1122222333332 23 456777654443
No 275
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=31.36 E-value=99 Score=36.89 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=49.8
Q ss_pred cCCCCeEEEEec-cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEE
Q 001095 988 KALPDKVIIFSQ-FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFL 1066 (1158)
Q Consensus 988 ~~~~~KVLVFSq-f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~ 1066 (1158)
..+|++||+... |-.+..+++..|++.||.+..++.....+ +++.... ++ ..+||
T Consensus 99 l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~----~~~~~~~-~~-------------------tk~v~ 154 (396)
T COG0626 99 LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEA----LEAAIKE-PN-------------------TKLVF 154 (396)
T ss_pred cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHH----HHHHhcc-cC-------------------ceEEE
Confidence 456888888877 88999999999999999998888754332 3333322 11 34567
Q ss_pred ECCCCCcChHHHHHhcccc
Q 001095 1067 MEPIWDRSMEEQVISRAHR 1085 (1158)
Q Consensus 1067 ~Dp~WNP~~e~QAigRahR 1085 (1158)
+|.+=||..+.+=|.++-|
T Consensus 155 lEtPsNP~l~v~DI~~i~~ 173 (396)
T COG0626 155 LETPSNPLLEVPDIPAIAR 173 (396)
T ss_pred EeCCCCcccccccHHHHHH
Confidence 7777777765554444433
No 276
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=31.34 E-value=3.2e+02 Score=34.99 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=31.1
Q ss_pred CCCcccccceEEEEccccccCCCchHHHHHHHHH-Hc-ccCeEEEEeCCCCCCC
Q 001095 680 KSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAI-SL-TASNRWLLTGTPTPNT 731 (1158)
Q Consensus 680 ~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L-~a~~RwlLTGTPiqN~ 731 (1158)
.+.+....+++||+|||+.|.... +..+. .+ ....++++.-+|...+
T Consensus 287 ~~s~RG~~~DLLIVDEAAfI~~~~-----l~aIlP~l~~~~~k~IiISS~~~~~ 335 (752)
T PHA03333 287 PNAARGQNPDLVIVDEAAFVNPGA-----LLSVLPLMAVKGTKQIHISSPVDAD 335 (752)
T ss_pred CCCcCCCCCCEEEEECcccCCHHH-----HHHHHHHHccCCCceEEEeCCCCcc
Confidence 344566678999999999998631 22222 22 2467888888887544
No 277
>PF13173 AAA_14: AAA domain
Probab=31.20 E-value=42 Score=32.96 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=26.6
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCC
Q 001095 687 HWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
.-..|++||+|++.+-. ...+.+..-....++++||.-...-
T Consensus 61 ~~~~i~iDEiq~~~~~~---~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWE---DALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhccHH---HHHHHHHHhccCceEEEEccchHHH
Confidence 55679999999998632 2222232222346999999855543
No 278
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=30.69 E-value=2.1e+02 Score=24.70 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=37.5
Q ss_pred eEEEEec-cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccC-CCeeEEE
Q 001095 993 KVIIFSQ-FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD-ASCLALL 1047 (1158)
Q Consensus 993 KVLVFSq-f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~-~~~~VLL 1047 (1158)
|+.||+. +=..-..+...|+..|++|..++=......++++.+..... .-+.|++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 4666764 33446677888899999999998877767777777766644 2344444
No 279
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=29.54 E-value=1.2e+02 Score=39.64 Aligned_cols=79 Identities=15% Similarity=0.065 Sum_probs=54.9
Q ss_pred EeCCCCHHHHHHHHHHhccCCCeeEEEEeCccccccCcccCCEEEEECC---------CCCcChHHHHHhcccccCCCCc
Q 001095 1021 MYSPMHSSNKIKSLDMFRHDASCLALLMDGSASLGLDLSFVTRVFLMEP---------IWDRSMEEQVISRAHRMGATRP 1091 (1158)
Q Consensus 1021 ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~agg~GLNLt~An~VI~~Dp---------~WNP~~e~QAigRahRiGQ~k~ 1091 (1158)
-+|+.=+--++-+-.-|+.+ -++||.+|.+-+.|+|+.+=+.| |-.. ..+|.-..|.-|||+|-|=-..
T Consensus 636 HH~GlLPivKE~VE~LFqrG-lVKVLFATETFAMGVNMPARtvV-F~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~t 713 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQRG-LVKVLFATETFAMGVNMPARTVV-FSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDET 713 (1248)
T ss_pred hcccchHHHHHHHHHHHhcC-ceEEEeehhhhhhhcCCCceeEE-eeehhhccCcceeecCChhHHhhhccccccccCcC
Confidence 34554444444455567655 68999999999999999865444 4332 2679999999999999997776
Q ss_pred EEEEEEEeCCC
Q 001095 1092 IHVETLAMRGT 1102 (1158)
Q Consensus 1092 V~V~rLi~~~T 1102 (1158)
=+|.- ++++.
T Consensus 714 GTVii-~~~~~ 723 (1248)
T KOG0947|consen 714 GTVII-MCKDS 723 (1248)
T ss_pred ceEEE-EecCC
Confidence 55543 44443
No 280
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=29.38 E-value=78 Score=41.55 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=63.5
Q ss_pred ccCCcccchHHHHHH-HHh------cCCEEEEECc-ccH----HHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCC
Q 001095 595 AALRLALCEPLDSVR-LYL------SRATLIVVPS-YLV----DHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYD 662 (1158)
Q Consensus 595 lad~mGLGKTlqaia-ll~------s~~tLIVvP~-sLl----~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~D 662 (1158)
++...|-|||+.+-. .+. .+.+.+|+|. .|+ +-|..-+..- .+++.-.+|...+...... ..|
T Consensus 948 ~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~----g~k~ie~tgd~~pd~~~v~-~~~ 1022 (1230)
T KOG0952|consen 948 LGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP----GIKVIELTGDVTPDVKAVR-EAD 1022 (1230)
T ss_pred hcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC----CceeEeccCccCCChhhee-cCc
Confidence 345799999987643 222 3789999995 444 5676555443 3777777777666655554 889
Q ss_pred EEEeechhhhhhhh-cCCCCCcccccceEEEEccccccCCC
Q 001095 663 VVITTFNRLSAEWG-RRKKSPMMQVHWLRVMLDEGHTLGSS 702 (1158)
Q Consensus 663 VVItTY~~L~~e~~-~~~~~~L~~~~w~rVIlDEAH~ikn~ 702 (1158)
++|||.+..-...+ ...+.-+ .....+|+||.|-++..
T Consensus 1023 ~~ittpek~dgi~Rsw~~r~~v--~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1023 IVITTPEKWDGISRSWQTRKYV--QSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred eEEcccccccCccccccchhhh--ccccceeecccccccCC
Confidence 99999876531100 0001111 13345899999999864
No 281
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=28.66 E-value=1.1e+02 Score=37.20 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=24.0
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHc-ccCeEEEEeCCC
Q 001095 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISL-TASNRWLLTGTP 727 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L-~a~~RwlLTGTP 727 (1158)
..+++|+||.|.+.+... +...+.....+ .....+++|++-
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 457899999999976421 12222222222 234578888853
No 282
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=28.54 E-value=26 Score=43.61 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=51.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCC-----HHHHHHHHHHhccC--CCeeEEEEe---CccccccCcc-
Q 001095 991 PDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMH-----SSNKIKSLDMFRHD--ASCLALLMD---GSASLGLDLS- 1059 (1158)
Q Consensus 991 ~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~-----~~~R~~~i~~F~~~--~~~~VLL~s---~agg~GLNLt- 1059 (1158)
+.-||+|-..-+.|..+.+..+..||- .+|.|.-+ ..--.++++.|... .+.-.+|.+ .-.++|||++
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 378999999999999999999988762 22222110 01124567777532 112233444 3458999999
Q ss_pred -cCCEEEEECCCCC
Q 001095 1060 -FVTRVFLMEPIWD 1072 (1158)
Q Consensus 1060 -~An~VI~~Dp~WN 1072 (1158)
-+.-||.+-.|+-
T Consensus 708 ~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYP 721 (821)
T ss_pred ccccEEEEeecCCC
Confidence 4677788888774
No 283
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=28.38 E-value=1.9e+02 Score=36.49 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=26.0
Q ss_pred ceEEEEccccccCCCch-HHHHHHHHHHccc-CeEEEEeCCCCCCC
Q 001095 688 WLRVMLDEGHTLGSSLN-LTNKLQMAISLTA-SNRWLLTGTPTPNT 731 (1158)
Q Consensus 688 w~rVIlDEAH~ikn~~s-~t~~~~~~~~L~a-~~RwlLTGTPiqN~ 731 (1158)
.++||||+.|.+.+... ....+..+..+.. ...+++|+.=....
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 58899999999986532 2222333333332 35677877644433
No 284
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=27.84 E-value=97 Score=37.69 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=23.2
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHc-ccCeEEEEeCCC
Q 001095 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISL-TASNRWLLTGTP 727 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L-~a~~RwlLTGTP 727 (1158)
..+++||||.|.+.+... +...+..+..+ .....+++|++-
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 466899999999976431 11222222222 233457777764
No 285
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=27.68 E-value=1.1e+02 Score=36.66 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=22.9
Q ss_pred ceEEEEccccccCCCch-HHHHHHHHHHc-ccCeEEEEeCC
Q 001095 688 WLRVMLDEGHTLGSSLN-LTNKLQMAISL-TASNRWLLTGT 726 (1158)
Q Consensus 688 w~rVIlDEAH~ikn~~s-~t~~~~~~~~L-~a~~RwlLTGT 726 (1158)
.++|||||.|.+.+... ....+..+..+ .....+++|++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 46899999999976421 11122222222 23456888876
No 286
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=27.40 E-value=2.7e+02 Score=31.69 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=23.2
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTP 727 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTP 727 (1158)
.....||+||+|.+.... .......+.......+++++++.
T Consensus 101 ~~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 101 APFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CCceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEeCC
Confidence 346789999999996421 11111222233445577777653
No 287
>PRK08727 hypothetical protein; Validated
Probab=27.23 E-value=89 Score=34.32 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=23.3
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHcc-cCeEEEEeCCC
Q 001095 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISLT-ASNRWLLTGTP 727 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L~-a~~RwlLTGTP 727 (1158)
..+.|||||.|.+..... ....+.....+. ....+++|+.=
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 346899999999975332 122222222222 23358888873
No 288
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.71 E-value=67 Score=41.31 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=35.6
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHHcccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYG 752 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~ 752 (1158)
-+|.++||||+|++.+.. .....+.+-.-....+++|+.|=.+.= +.-|.+-+..++...+.
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTtd~~KI----p~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATTDPQKI----PVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEECChhhc----cchhhhheEEEecCCcC
Confidence 468999999999997521 111112222223456888888755443 44555555555544444
No 289
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=26.69 E-value=2.9e+02 Score=34.98 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=34.7
Q ss_pred eEEEEecCCCCcccccccCCCCEEEeechhhhhhhhcCCCCCcccccceEEEEccccccCC
Q 001095 641 LHLFVWTDHKKPSAHSLAWDYDVVITTFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGS 701 (1158)
Q Consensus 641 l~v~v~~g~~~~~~~~l~~~~DVVItTY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn 701 (1158)
++.+-|.+.+... ...++|+-.|..|-.+..+.. .=-...=..||+||||++-+
T Consensus 309 ~~~CPYY~SR~av-----p~aqlV~LPYQ~LL~~stR~s--lgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 309 LRGCPYYASRRAV-----PQAQLVTLPYQLLLHESTRKS--LGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred cCCCCchhhhhcc-----ccccEEeccHHHHHhHHHHHh--cCccccccEEEEechhHHHH
Confidence 4555555554322 367999999999986633211 11234456899999999865
No 290
>PRK14974 cell division protein FtsY; Provisional
Probab=25.95 E-value=2.3e+02 Score=33.07 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=24.6
Q ss_pred cceEEEEccccccCCCchHHHHHHHHH-Hccc-CeEEEEeCCCCCC
Q 001095 687 HWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTA-SNRWLLTGTPTPN 730 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~a-~~RwlLTGTPiqN 730 (1158)
..++||+|.++++.+.......++.+. .+.. ...+++++|--++
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 568999999999976432222222222 2223 3346677765443
No 291
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.86 E-value=2.3e+02 Score=34.29 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=35.9
Q ss_pred cceEEEEccccccCCCchHHHHHHHHHH---cccCeEEEEeCCCCCCCccchhhhhHHHhhhcCC
Q 001095 687 HWLRVMLDEGHTLGSSLNLTNKLQMAIS---LTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHE 748 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~~~~~---L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p 748 (1158)
.+++||+|.+-+..........+..+.. ......++|++|+-++. +.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~----l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED----LKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH----HHHHHHHhCCCCC
Confidence 5789999998765432222222222222 12345788999987777 7777777766654
No 292
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=25.67 E-value=2.2e+02 Score=36.67 Aligned_cols=77 Identities=8% Similarity=0.042 Sum_probs=55.0
Q ss_pred CCCCeEEEEeccHHHHHHHHHH----HHHCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEeC-ccccccCcccCCE
Q 001095 989 ALPDKVIIFSQFLEHIHVIEQQ----LTVAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMDG-SASLGLDLSFVTR 1063 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~----L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s~-agg~GLNLt~An~ 1063 (1158)
..+.+++|.+.-.....-+.+. +...|+++..++|+++.++|...++...++ .+.|++.|. .....+++.....
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~v~~~~l~l 386 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIVIGTHALIQDDVEFHNLGL 386 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEEEchHHHhcccchhcccce
Confidence 3578999999988876655444 445589999999999999999999988765 356777773 3344455555544
Q ss_pred EEE
Q 001095 1064 VFL 1066 (1158)
Q Consensus 1064 VI~ 1066 (1158)
||+
T Consensus 387 vVI 389 (681)
T PRK10917 387 VII 389 (681)
T ss_pred EEE
Confidence 444
No 293
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.38 E-value=70 Score=39.47 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=52.8
Q ss_pred CcccchHHHHHHHHhc------CCEEEEEC-cccHHHHHHHHHhhcCCCC--eEEEEecCCCCc-----ccccccCCCCE
Q 001095 598 RLALCEPLDSVRLYLS------RATLIVVP-SYLVDHWKTQIQQHVRPGQ--LHLFVWTDHKKP-----SAHSLAWDYDV 663 (1158)
Q Consensus 598 ~mGLGKTlqaiall~s------~~tLIVvP-~sLl~qW~~Ei~k~~~~~~--l~v~v~~g~~~~-----~~~~l~~~~DV 663 (1158)
..|.|||+.+.++++. +..|..|- .++++-=..-+..-+.... -.++.+.|...+ ..........|
T Consensus 5 atgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~iei 84 (812)
T COG3421 5 ATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDAIEI 84 (812)
T ss_pred ccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCceEE
Confidence 3789999999999874 56676665 4566433222211111000 011112222110 11111224568
Q ss_pred EEeechhhhhhhhcCCCCCc--cccc--ceEEEEccccccCC
Q 001095 664 VITTFNRLSAEWGRRKKSPM--MQVH--WLRVMLDEGHTLGS 701 (1158)
Q Consensus 664 VItTY~~L~~e~~~~~~~~L--~~~~--w~rVIlDEAH~ikn 701 (1158)
+.||.+-|-+++.......+ ...+ =-+.+-||||+|..
T Consensus 85 ~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 85 YFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred EEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 88988887766653322222 2221 13456899999964
No 294
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=25.34 E-value=1.9e+02 Score=37.62 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=28.1
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHH-HcccCeEEEEeCCCCCCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAI-SLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~-~L~a~~RwlLTGTPiqN~ 731 (1158)
...++||+||+.++.... . ...+. ......+++|.|=|-|-.
T Consensus 438 ~~~~llIvDEasMv~~~~--~--~~Ll~~~~~~~~kliLVGD~~QLp 480 (744)
T TIGR02768 438 SDKDVLVIDEAGMVGSRQ--M--ARVLKEAEEAGAKVVLVGDPEQLQ 480 (744)
T ss_pred CCCcEEEEECcccCCHHH--H--HHHHHHHHhcCCEEEEECChHHcc
Confidence 367899999999998532 1 12222 234677999999665544
No 295
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=25.19 E-value=1.4e+02 Score=34.98 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=70.0
Q ss_pred cccchHHHHHHHHhc--------CCEEEEECcccHH-HHHHHHHhhcCCCCeEEEEecCC-CCc-ccccc-cCCCCEEEe
Q 001095 599 LALCEPLDSVRLYLS--------RATLIVVPSYLVD-HWKTQIQQHVRPGQLHLFVWTDH-KKP-SAHSL-AWDYDVVIT 666 (1158)
Q Consensus 599 mGLGKTlqaiall~s--------~~tLIVvP~sLl~-qW~~Ei~k~~~~~~l~v~v~~g~-~~~-~~~~l-~~~~DVVIt 666 (1158)
-|.|||..-...++. .-.||++|..-+. |=..-...+......++....|. ... ....+ .....||+-
T Consensus 72 sgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvG 151 (397)
T KOG0327|consen 72 SGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVG 151 (397)
T ss_pred ccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecC
Confidence 799999874443332 4678999988554 43333333333323444433332 222 11111 223567777
Q ss_pred echhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHHHHHHcccC-eEEEEeCCC
Q 001095 667 TFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTAS-NRWLLTGTP 727 (1158)
Q Consensus 667 TY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~-~RwlLTGTP 727 (1158)
|-..+.... ....|..-.-...|+|||....+.+-+.........+... ..+++|+|-
T Consensus 152 TpgrV~dml---~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 152 TPGRVFDML---NRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred CchhHHHhh---ccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 765554332 2335666667889999999998776555544444444433 456677773
No 296
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=24.95 E-value=2.7e+02 Score=28.38 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=42.3
Q ss_pred eEEEEecc-------HHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhcc----CCCeeEEEEe
Q 001095 993 KVIIFSQF-------LEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRH----DASCLALLMD 1049 (1158)
Q Consensus 993 KVLVFSqf-------~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~----~~~~~VLL~s 1049 (1158)
||+||+.. -..-..+...|+..+|+|..+|=++..+-++++.+.... ..-+.|+|-.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G 68 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDG 68 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECC
Confidence 57788776 345677888999999999999988888888887776543 2335666654
No 297
>PLN03025 replication factor C subunit; Provisional
Probab=24.91 E-value=92 Score=35.95 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=36.4
Q ss_pred ccceEEEEccccccCCCchHHHHHHHHHH-cccCeEEEEeCCCCCCCccchhhhhHHHhhhcCCCcCC
Q 001095 686 VHWLRVMLDEGHTLGSSLNLTNKLQMAIS-LTASNRWLLTGTPTPNTPNSQLSHLQPMLKFLHEEAYG 752 (1158)
Q Consensus 686 ~~w~rVIlDEAH~ikn~~s~t~~~~~~~~-L~a~~RwlLTGTPiqN~~~~~l~dL~sLl~FL~p~~~~ 752 (1158)
-.|..||+||+|.+-.. . .+....... .....+++++.++...- +..|.+-+..+.-.++.
T Consensus 98 ~~~kviiiDE~d~lt~~-a-q~aL~~~lE~~~~~t~~il~~n~~~~i----~~~L~SRc~~i~f~~l~ 159 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-A-QQALRRTMEIYSNTTRFALACNTSSKI----IEPIQSRCAIVRFSRLS 159 (319)
T ss_pred CCeEEEEEechhhcCHH-H-HHHHHHHHhcccCCceEEEEeCCcccc----chhHHHhhhcccCCCCC
Confidence 36899999999998642 1 222222222 23456788888866554 55666666555554444
No 298
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=24.83 E-value=67 Score=36.49 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=9.9
Q ss_pred eEEEEcccccc
Q 001095 689 LRVMLDEGHTL 699 (1158)
Q Consensus 689 ~rVIlDEAH~i 699 (1158)
..+++||+|.+
T Consensus 123 gvL~iDEi~~L 133 (284)
T TIGR02880 123 GVLFIDEAYYL 133 (284)
T ss_pred cEEEEechhhh
Confidence 58999999998
No 299
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=24.30 E-value=2.2e+02 Score=37.56 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=76.7
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHC-------CCeEEEEeCCCCHHHHHHHHHHhccCCC--eeEEEEeCccccccCcc
Q 001095 989 ALPDKVIIFSQFLEHIHVIEQQLTVA-------GIKFAGMYSPMHSSNKIKSLDMFRHDAS--CLALLMDGSASLGLDLS 1059 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~-------gi~~~~ldG~t~~~~R~~~i~~F~~~~~--~~VLL~s~agg~GLNLt 1059 (1158)
.....+|||-.-..-+..+.+.|..+ ++-...++++++..+.+.+ |+..+. -+|+++|--+-..|+.-
T Consensus 411 ~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITId 487 (924)
T KOG0920|consen 411 EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITID 487 (924)
T ss_pred CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhccccc
Confidence 55779999999999888888888653 2456778999988766655 555443 57888887777778777
Q ss_pred cCCEEE--------EECCCCC----------cChHHHHHhcccccCCCCcEEEEEEEeCCCHH
Q 001095 1060 FVTRVF--------LMEPIWD----------RSMEEQVISRAHRMGATRPIHVETLAMRGTVE 1104 (1158)
Q Consensus 1060 ~An~VI--------~~Dp~WN----------P~~e~QAigRahRiGQ~k~V~V~rLi~~~TIE 1104 (1158)
..-+|| .|||.-| -+.-.||.||++| .++=..|+|+++.-.+
T Consensus 488 DVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 488 DVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYE 547 (924)
T ss_pred CeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhh
Confidence 766665 4454433 2245676666665 4667889998875433
No 300
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.01 E-value=1.7e+02 Score=35.45 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCCCeEEEEeccHHHHHHHHHHHHHC---------CCeEEEEeCCCCHHHHHHHHHHhc----cCCCeeEEEEeCccccc
Q 001095 989 ALPDKVIIFSQFLEHIHVIEQQLTVA---------GIKFAGMYSPMHSSNKIKSLDMFR----HDASCLALLMDGSASLG 1055 (1158)
Q Consensus 989 ~~~~KVLVFSqf~~~ld~L~~~L~~~---------gi~~~~ldG~t~~~~R~~~i~~F~----~~~~~~VLL~s~agg~G 1055 (1158)
+...-+|||-.-.+-++...+.+... .++++-++ +.+.+.+.+--. ...+-+|.++|-.+-..
T Consensus 251 ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaets 326 (699)
T KOG0925|consen 251 EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETS 326 (699)
T ss_pred cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchhee
Confidence 34567889987777665555544422 23455554 233333322111 22346788888777766
Q ss_pred cCcccCCEEEEECCC------CCcC-----------hHHHHHhcccccCCCCcEEEEEEEeCCCHHHHH
Q 001095 1056 LDLSFVTRVFLMEPI------WDRS-----------MEEQVISRAHRMGATRPIHVETLAMRGTVEEQM 1107 (1158)
Q Consensus 1056 LNLt~An~VI~~Dp~------WNP~-----------~e~QAigRahRiGQ~k~V~V~rLi~~~TIEE~I 1107 (1158)
|.+.+.-+ .+||. +||. .-.||..|+.|-|.+++-..++|+++...+..|
T Consensus 327 ltidgiv~--VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em 393 (699)
T KOG0925|consen 327 LTIDGIVF--VIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEM 393 (699)
T ss_pred eeeccEEE--EecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcC
Confidence 66655444 45775 5654 457999999999999999999999987655433
No 301
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.90 E-value=57 Score=40.06 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=64.1
Q ss_pred CcccchHHHHHHHHh------c-------CCEEEEECc-ccHHHHHHHHHhhc--CCCCeEEEEecCCCCc---cccccc
Q 001095 598 RLALCEPLDSVRLYL------S-------RATLIVVPS-YLVDHWKTQIQQHV--RPGQLHLFVWTDHKKP---SAHSLA 658 (1158)
Q Consensus 598 ~mGLGKTlqaiall~------s-------~~tLIVvP~-sLl~qW~~Ei~k~~--~~~~l~v~v~~g~~~~---~~~~l~ 658 (1158)
-.|-|||+.-+.=+. . -..+|+.|. .|..|=..|+.+.. ....++...+.....+ ......
T Consensus 181 pTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~ 260 (593)
T KOG0344|consen 181 PTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSD 260 (593)
T ss_pred cCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHH
Confidence 589999864433221 1 257999995 58899999999987 3333444433332211 111122
Q ss_pred CCCCEEEeechhhhhhhhcC-CCCCcccccceEEEEccccccCCC
Q 001095 659 WDYDVVITTFNRLSAEWGRR-KKSPMMQVHWLRVMLDEGHTLGSS 702 (1158)
Q Consensus 659 ~~~DVVItTY~~L~~e~~~~-~~~~L~~~~w~rVIlDEAH~ikn~ 702 (1158)
..||+.|.|-..+...+... ..-.|..++| +|+|||.++.++
T Consensus 261 ~k~dili~TP~ri~~~~~~~~~~idl~~V~~--lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 261 EKYDILISTPMRIVGLLGLGKLNIDLSKVEW--LVVDEADLLFEP 303 (593)
T ss_pred HHHHHHhcCHHHHHHHhcCCCccchhheeee--EeechHHhhhCh
Confidence 37899998888776554321 1124556666 889999999987
No 302
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=23.80 E-value=64 Score=39.08 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=57.8
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHH-----H-CCCeEEEEeCCCCHHHHHHHHHHhcc---CCCeeEEEEe-C-cccccc
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLT-----V-AGIKFAGMYSPMHSSNKIKSLDMFRH---DASCLALLMD-G-SASLGL 1056 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~-----~-~gi~~~~ldG~t~~~~R~~~i~~F~~---~~~~~VLL~s-~-agg~GL 1056 (1158)
..++.-|..|..|.-+-.++..+-. + ...+-+ +-+.-...+-.-+++.+.. .+.--||++- + .-++|+
T Consensus 528 ~vpdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~-fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgi 606 (755)
T KOG1131|consen 528 IVPDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLL-FIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGI 606 (755)
T ss_pred cCCCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceE-EEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCc
Confidence 4466666677777666555443321 1 122333 3343333344556666653 2223455544 2 347899
Q ss_pred CcccC--CEEEEECCCCCcC------------------------------hHHHHHhcccccCCCCcEEE
Q 001095 1057 DLSFV--TRVFLMEPIWDRS------------------------------MEEQVISRAHRMGATRPIHV 1094 (1158)
Q Consensus 1057 NLt~A--n~VI~~Dp~WNP~------------------------------~e~QAigRahRiGQ~k~V~V 1094 (1158)
++..- ..||++-.|+--+ .-.|..||+-|.-|..-+.|
T Consensus 607 dF~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI 676 (755)
T KOG1131|consen 607 DFDHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGKTDYGLMI 676 (755)
T ss_pred ccccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhccccceeeE
Confidence 98743 4777777765433 23589999998655444444
No 303
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=23.75 E-value=3.2e+02 Score=35.98 Aligned_cols=127 Identities=14% Similarity=0.073 Sum_probs=63.8
Q ss_pred CcccchHHHHHHHHhc----CCEEEEE--Ccc-----cHHHHHHHHHhhcCCCCeEEEEecCCCCcccccccCCCCEEEe
Q 001095 598 RLALCEPLDSVRLYLS----RATLIVV--PSY-----LVDHWKTQIQQHVRPGQLHLFVWTDHKKPSAHSLAWDYDVVIT 666 (1158)
Q Consensus 598 ~mGLGKTlqaiall~s----~~tLIVv--P~s-----Ll~qW~~Ei~k~~~~~~l~v~v~~g~~~~~~~~l~~~~DVVIt 666 (1158)
+.|-|||-|.=-+++. +...|+| |-- +-.-=.+|+....+. ..-|.....+..+ .+--|-++
T Consensus 73 etGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~--~VGY~iRfe~~~s-----~~Trik~m 145 (845)
T COG1643 73 ETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGE--TVGYSIRFESKVS-----PRTRIKVM 145 (845)
T ss_pred CCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc--eeeEEEEeeccCC-----CCceeEEe
Confidence 4999999887666553 2334444 322 234445555554432 2212111111111 12345677
Q ss_pred echhhhhhhhcCCCCCcccccceEEEEccccccCCCchHHHHHH-H----HHHccc-CeEEEEeCCCCCCCccchhhhhH
Q 001095 667 TFNRLSAEWGRRKKSPMMQVHWLRVMLDEGHTLGSSLNLTNKLQ-M----AISLTA-SNRWLLTGTPTPNTPNSQLSHLQ 740 (1158)
Q Consensus 667 TY~~L~~e~~~~~~~~L~~~~w~rVIlDEAH~ikn~~s~t~~~~-~----~~~L~a-~~RwlLTGTPiqN~~~~~l~dL~ 740 (1158)
|-.+|.++... .+ .--.++.||+||+|.=- -+ +.... . +..++. -+.+++|+|==..+ ++.++
T Consensus 146 TdGiLlrei~~---D~-~Ls~ys~vIiDEaHERS-l~--tDilLgllk~~~~~rr~DLKiIimSATld~~r----fs~~f 214 (845)
T COG1643 146 TDGILLREIQN---DP-LLSGYSVVIIDEAHERS-LN--TDILLGLLKDLLARRRDDLKLIIMSATLDAER----FSAYF 214 (845)
T ss_pred ccHHHHHHHhh---Cc-ccccCCEEEEcchhhhh-HH--HHHHHHHHHHHHhhcCCCceEEEEecccCHHH----HHHHc
Confidence 88888776431 11 13467899999999521 11 11111 1 112232 34578999965555 55555
Q ss_pred HH
Q 001095 741 PM 742 (1158)
Q Consensus 741 sL 742 (1158)
+-
T Consensus 215 ~~ 216 (845)
T COG1643 215 GN 216 (845)
T ss_pred CC
Confidence 43
No 304
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.53 E-value=2.3e+02 Score=32.61 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=50.5
Q ss_pred cCCCCeEEEEeccHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccC-----CCeeEEEEe
Q 001095 988 KALPDKVIIFSQFLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD-----ASCLALLMD 1049 (1158)
Q Consensus 988 ~~~~~KVLVFSqf~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~-----~~~~VLL~s 1049 (1158)
...+++|||-..=..+--..+..|+..||.+.|+-|....+--.++...|+++ .+.++.+.+
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 34678999999998888899999999999999999988777777888888632 345666666
No 305
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=23.42 E-value=2.4e+02 Score=30.56 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=21.7
Q ss_pred ceEEEEccccccCCCchHHHHHHHHHHcccC--eEEEEeCCC
Q 001095 688 WLRVMLDEGHTLGSSLNLTNKLQMAISLTAS--NRWLLTGTP 727 (1158)
Q Consensus 688 w~rVIlDEAH~ikn~~s~t~~~~~~~~L~a~--~RwlLTGTP 727 (1158)
-+.||+||+|.+... .....+..+...... ..+++|++.
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~ 131 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPA 131 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 467999999998542 222222333333322 246777764
No 306
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=23.36 E-value=1.3e+02 Score=36.47 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=22.8
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHcc-cCeEEEEeCC
Q 001095 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISLT-ASNRWLLTGT 726 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L~-a~~RwlLTGT 726 (1158)
..+.+|+||.|.+.+... +...+..+..+. ....+++|++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 467999999999865421 112222222232 2346777765
No 307
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=22.80 E-value=73 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=12.7
Q ss_pred chhhhhhhhccccCCCCCCCCCccc
Q 001095 910 RHILCLDCVAMDSEKCSLPGCGFLY 934 (1158)
Q Consensus 910 ~h~~C~~c~~~~~~~~~~p~C~~~~ 934 (1158)
.|+||..|+....... ||.|..+.
T Consensus 27 eH~fCs~Ci~~~~~~~-CPvC~~Pa 50 (65)
T PF14835_consen 27 EHIFCSSCIRDCIGSE-CPVCHTPA 50 (65)
T ss_dssp S--B-TTTGGGGTTTB--SSS--B-
T ss_pred ccHHHHHHhHHhcCCC-CCCcCChH
Confidence 8999999998654433 88998764
No 308
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=41 Score=35.01 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=17.1
Q ss_pred chhhhhhhhccccC-CCCCCCCCc
Q 001095 910 RHILCLDCVAMDSE-KCSLPGCGF 932 (1158)
Q Consensus 910 ~h~~C~~c~~~~~~-~~~~p~C~~ 932 (1158)
+|+||..|+..... .-.||.|++
T Consensus 152 GHvFC~~Cik~alk~~~~CP~C~k 175 (187)
T KOG0320|consen 152 GHVFCSQCIKDALKNTNKCPTCRK 175 (187)
T ss_pred chhHHHHHHHHHHHhCCCCCCccc
Confidence 99999999984433 345678886
No 309
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=22.27 E-value=2.8e+02 Score=30.09 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=24.1
Q ss_pred cceEEEEccccccCCCch-HHHHHHHHHHc-ccCeEEEEeCC
Q 001095 687 HWLRVMLDEGHTLGSSLN-LTNKLQMAISL-TASNRWLLTGT 726 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s-~t~~~~~~~~L-~a~~RwlLTGT 726 (1158)
..+.+|+|..|.+.+... +...+.....+ ....++++|+-
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 578999999999987431 11222222222 34557777774
No 310
>PRK13556 azoreductase; Provisional
Probab=22.12 E-value=51 Score=35.49 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=26.6
Q ss_pred cccCCEEEEECCCCC---cChHHHHHhcccccC
Q 001095 1058 LSFVTRVFLMEPIWD---RSMEEQVISRAHRMG 1087 (1158)
Q Consensus 1058 Lt~An~VI~~Dp~WN---P~~e~QAigRahRiG 1087 (1158)
|..|+.|||.-|.|| |+..-+.|+|+.|.|
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g 119 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAG 119 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCC
Confidence 568899999999999 668999999999986
No 311
>PF08469 NPHI_C: Nucleoside triphosphatase I C-terminal; InterPro: IPR013676 This viral domain is found to the C terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) [] together with the helicase conserved C-terminal domain (IPR001650 from INTERPRO). ; GO: 0005524 ATP binding, 0017111 nucleoside-triphosphatase activity, 0006351 transcription, DNA-dependent
Probab=21.65 E-value=1.8e+02 Score=29.31 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCcEEEEEEEeC-----CCHHHHHHHHHHHhHHHHHHHHhhhc
Q 001095 1089 TRPIHVETLAMR-----GTVEEQMLEFLQDTDRCRRLLKEELV 1126 (1158)
Q Consensus 1089 ~k~V~V~rLi~~-----~TIEE~Il~~l~~K~~l~~~v~~~~~ 1126 (1158)
.|-|.||..+++ -||||.++++.+.|......+...+.
T Consensus 8 rRYVNVhFIiAr~~ng~~sVDedlldiIk~Kskef~qLf~vlK 50 (148)
T PF08469_consen 8 RRYVNVHFIIARLSNGRPSVDEDLLDIIKDKSKEFNQLFKVLK 50 (148)
T ss_pred ceEEEEEEEEEEcCCCCcchHHHHHHHHHHHHHHHHHHHHHhH
Confidence 357999988882 48999999999999866555555544
No 312
>PRK10824 glutaredoxin-4; Provisional
Probab=21.26 E-value=2.9e+02 Score=26.95 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=41.1
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHhccC-CCeeEEEEe-Ccccc
Q 001095 990 LPDKVIIFSQ------FLEHIHVIEQQLTVAGIKFAGMYSPMHSSNKIKSLDMFRHD-ASCLALLMD-GSASL 1054 (1158)
Q Consensus 990 ~~~KVLVFSq------f~~~ld~L~~~L~~~gi~~~~ldG~t~~~~R~~~i~~F~~~-~~~~VLL~s-~agg~ 1054 (1158)
..++|+||+. +=.+-..+.+.|...|++|..++=....+.|. .+.++..- .-+.|+|-. ..||.
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcCh
Confidence 5689999987 34466677788888898876665443444444 45555433 336788765 35553
No 313
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=20.95 E-value=55 Score=37.86 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=28.8
Q ss_pred cceEEEEccccccCCCchHHHHHH-HHHHcccCeEEEEeCCCCCCC
Q 001095 687 HWLRVMLDEGHTLGSSLNLTNKLQ-MAISLTASNRWLLTGTPTPNT 731 (1158)
Q Consensus 687 ~w~rVIlDEAH~ikn~~s~t~~~~-~~~~L~a~~RwlLTGTPiqN~ 731 (1158)
.=-.|||||||+ .. ..+.+ .+.+|-...+.++||.+.|=+
T Consensus 243 ~dAfVIlDEaQN-tT----~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 243 NDAFVILDEAQN-TT----VGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred CCeEEEEecccc-cc----hhhhceeeeeecCCceEEEEcCccccc
Confidence 335799999998 32 22222 334677888999999999987
No 314
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=20.89 E-value=60 Score=37.09 Aligned_cols=47 Identities=17% Similarity=0.036 Sum_probs=27.4
Q ss_pred CCcccccceEEEEccccccCCCch--HHHHHHHHHHcccCe--EEEEeCCC
Q 001095 681 SPMMQVHWLRVMLDEGHTLGSSLN--LTNKLQMAISLTASN--RWLLTGTP 727 (1158)
Q Consensus 681 ~~L~~~~w~rVIlDEAH~ikn~~s--~t~~~~~~~~L~a~~--RwlLTGTP 727 (1158)
..|..+.-.++|+||.|++-..+. +.....+++.|...- -+++.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 355677888999999999744321 222233444443322 35666775
No 315
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=20.23 E-value=95 Score=34.08 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHhccccccccCCccccccccCCCceeEEecccccccccCCCCccCCCCceeccCCCCchh---HH
Q 001095 164 KLKLFPHQQAAVEWMLHREWNAEVLRHPLYIDLATEDGFYFYVNTVSGDIATGTAPTMRDFHGGMFCDEPGLGKT---IT 240 (1158)
Q Consensus 164 ~~~L~~yQ~~~l~Wml~rE~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~GGILaDeMGLGKT---l~ 240 (1158)
+.-+||-|.+-..-|..-+.+.+. ++-=-||-||| +.
T Consensus 21 ~iliR~~Q~~ia~~mi~~~~~~n~----------------------------------------v~QlnMGeGKTsVI~P 60 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISPPSGKNS----------------------------------------VMQLNMGEGKTSVIVP 60 (229)
T ss_pred CceeeHHHHHHHHHHhCCCCCCCe----------------------------------------EeeecccCCccchHHH
Q ss_pred HHHHHHhhCCCcc--cCCcccccc
Q 001095 241 ALSLILKTQGTLA--DPPDGVKII 262 (1158)
Q Consensus 241 ~LalI~~~~~~~~--~~P~~~~~~ 262 (1158)
++++++++...++ ++|.+++.|
T Consensus 61 mla~~LAdg~~LvrviVpk~Ll~q 84 (229)
T PF12340_consen 61 MLALALADGSRLVRVIVPKALLEQ 84 (229)
T ss_pred HHHHHHcCCCcEEEEEcCHHHHHH
No 316
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.22 E-value=2.9e+02 Score=35.20 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=45.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHH----HCCCeEEEEeCCCCHHHHHHHHHHhccCCCeeEEEEe
Q 001095 990 LPDKVIIFSQFLEHIHVIEQQLT----VAGIKFAGMYSPMHSSNKIKSLDMFRHDASCLALLMD 1049 (1158)
Q Consensus 990 ~~~KVLVFSqf~~~ld~L~~~L~----~~gi~~~~ldG~t~~~~R~~~i~~F~~~~~~~VLL~s 1049 (1158)
.+.+++|-+.......-+.+.+. ..|+++..++|+++.++|...++...++ .+.|++.|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~IiVgT 345 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHLVVGT 345 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCEEEec
Confidence 57789999998887665555444 4589999999999999999888888755 34566666
Done!