BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001096
(1158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EYW|A Chain A, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc
In Complex With Keff
pdb|3EYW|B Chain B, Crystal Structure Of The C-terminal Domain Of E. Coli Kefc
In Complex With Keff
pdb|3L9W|A Chain A, Kefc C-Terminal Domain In Complex With Keff And Gsh
pdb|3L9W|B Chain B, Kefc C-Terminal Domain In Complex With Keff And Gsh
pdb|3L9X|A Chain A, Kefc C-Terminal Domain In Complex With Keff And Esg
pdb|3L9X|B Chain B, Kefc C-Terminal Domain In Complex With Keff And Esg
Length = 413
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%)
Query: 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071
+I+ GFGR GQI +LL + V LD D + R + V++GDA ++L GA
Sbjct: 7 VIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGA 66
Query: 1072 ERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLE 1130
+A +D P N + + ++FP+++ RA D+DH + L +AG ET E
Sbjct: 67 AKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFE 125
>pdb|3FWZ|A Chain A, Crystal Structure Of Trka-n Domain Of Inner Membrane Protein
Ybal From Escherichia Coli
pdb|3FWZ|B Chain B, Crystal Structure Of Trka-n Domain Of Inner Membrane Protein
Ybal From Escherichia Coli
Length = 140
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 1007 DLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVL 1066
D+ +H +L G+GRVG ++ + L IP V ++ RV R + G+A + E+
Sbjct: 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIX 64
Query: 1067 HKVGAERACAAAITLDTPGANY--RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAV 1124
E CA + L P V + P+++ RAH D + + GA V
Sbjct: 65 QLAHLE--CAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQV 122
Query: 1125 V 1125
V
Sbjct: 123 V 123
>pdb|4GVL|A Chain A, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|B Chain B, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|C Chain C, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|D Chain D, Crystal Structure Of The Gsuk Rck Domain
Length = 462
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 1002 ESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAG 1061
E+ D+L I + G GR+G A L + +PF+ +D + V D V +GDA
Sbjct: 241 EAPEDEL---IFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN----DHVVVYGDAT 293
Query: 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGA 1121
+ L + G +RA +T + N A +++ RA+ ++ L AGA
Sbjct: 294 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGA 353
Query: 1122 TAVV 1125
VV
Sbjct: 354 DFVV 357
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 1002 ESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAG 1061
E+ D+L I + G GR+G A L + +PF+ +D + V D V +GDA
Sbjct: 344 EAPEDEL---IFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN----DHVVVYGDAT 396
Query: 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGA 1121
+ L + G +RA +T + N A +++ RA+ ++ L AGA
Sbjct: 397 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGA 456
Query: 1122 TAVV 1125
VV
Sbjct: 457 DFVV 460
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 1002 ESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAG 1061
E+ D+L I + G GR+G A L + +PF+ +D + V D V +GDA
Sbjct: 344 EAPEDEL---IFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN----DHVVVYGDAT 396
Query: 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGA 1121
+ L + G +RA +T + N A +++ RA+ ++ L AGA
Sbjct: 397 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAAGA 456
Query: 1122 TAVV 1125
VV
Sbjct: 457 DFVV 460
>pdb|1LSS|A Chain A, Ktn Mja218 Crystal Structure In Complex With Nad+
pdb|1LSS|B Chain B, Ktn Mja218 Crystal Structure In Complex With Nad+
pdb|1LSS|C Chain C, Ktn Mja218 Crystal Structure In Complex With Nad+
pdb|1LSS|D Chain D, Ktn Mja218 Crystal Structure In Complex With Nad+
Length = 140
Score = 36.2 bits (82), Expect = 0.098, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKV 1069
+II+ G GRVG +A+ LSE+ V +D+ D A +D V GD + L
Sbjct: 6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA 65
Query: 1070 GAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVV-PET 1128
G E A N + Y N KT R +I++ E+ G VV PE
Sbjct: 66 GIEDADMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLGVDVVVSPEL 124
Query: 1129 L 1129
+
Sbjct: 125 I 125
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 1001 VESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDA 1060
VES +DL D + + G G G+ + +L LI FV V +R +G L + + F ++
Sbjct: 37 VESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES 96
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The (Beta-
Alpha)8-Barrel Of The Imidazole Glycerol Phosphate
Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The (Beta-
Alpha)8 Barrel Of The Imidazole Glycerol Phosphate
Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The (Beta-
Alpha)8 Barrel Of The Imidazole Glycerol Phosphate
Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The (Beta-
Alpha)8 Barrel Of The Imidazole Glycerol Phosphate
Synthase Bienzyme Complex
Length = 201
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 1001 VESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDA 1060
VES +DL D + + G G G+ + +L LI FV V +R +G L + + F ++
Sbjct: 35 VESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES 94
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 1001 VESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDA 1060
VES +DL D + + G G G+ + +L LI FV V +R +G L + + F ++
Sbjct: 35 VESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES 94
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 4 ACGLQQPNVFEGTRYRISDRLINSRFRYGGFGYNVSN 40
A L+QPN E RY RL+ +GGF +V+N
Sbjct: 127 AYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 4 ACGLQQPNVFEGTRYRISDRLINSRFRYGGFGYNVSN 40
A L+QPN E RY RL+ +GGF +V+N
Sbjct: 127 AYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 564 EEASSNAKPLIREVKKLPKRIKKLLDMLPEQEINEEEASLFDVLWLLLASVI 615
EE S + P ++EV + KRI D+ ++N +A F+VL + AS+
Sbjct: 18 EEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLF 69
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 564 EEASSNAKPLIREVKKLPKRIKKLLDMLPEQEINEEEASLFDVLWLLLASVI 615
EE S + P ++EV + KRI D+ ++N +A F+VL + AS+
Sbjct: 23 EEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLF 74
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 564 EEASSNAKPLIREVKKLPKRIKKLLDMLPEQEINEEEASLFDVLWLLLASVI 615
EE S + P ++EV + KRI D+ ++N +A F+VL + AS+
Sbjct: 18 EEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLF 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,041,799
Number of Sequences: 62578
Number of extensions: 1062500
Number of successful extensions: 2596
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2530
Number of HSP's gapped (non-prelim): 75
length of query: 1158
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1049
effective length of database: 8,152,335
effective search space: 8551799415
effective search space used: 8551799415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)