Query 001096
Match_columns 1158
No_of_seqs 361 out of 2291
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 15:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 3.8E-72 8.2E-77 685.6 61.8 528 601-1142 5-533 (621)
2 PRK03659 glutathione-regulated 100.0 7.5E-72 1.6E-76 681.5 62.6 532 597-1142 1-533 (601)
3 PRK10669 putative cation:proto 100.0 1.6E-69 3.4E-74 657.6 62.1 549 598-1148 3-556 (558)
4 PLN03159 cation/H(+) antiporte 100.0 2.6E-47 5.7E-52 478.5 42.9 416 593-1024 27-475 (832)
5 COG0475 KefB Kef-type K+ trans 100.0 4.4E-42 9.6E-47 400.8 44.1 373 598-980 3-380 (397)
6 COG4651 RosB Kef-type K+ trans 100.0 1.9E-39 4.1E-44 349.4 33.0 393 597-991 1-395 (408)
7 PRK05326 potassium/proton anti 100.0 3E-38 6.6E-43 384.3 39.2 372 601-981 6-384 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 1E-37 2.2E-42 361.5 -1.8 363 608-981 3-375 (380)
9 KOG1650 Predicted K+/H+-antipo 100.0 2.6E-34 5.6E-39 357.0 27.1 413 603-1031 25-467 (769)
10 TIGR00932 2a37 transporter, mo 100.0 8.7E-33 1.9E-37 307.5 33.2 272 611-890 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 5.6E-29 1.2E-33 303.3 42.4 347 604-956 16-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 9.5E-28 2.1E-32 289.8 40.6 330 607-949 4-363 (525)
13 COG3263 NhaP-type Na+/H+ and K 100.0 2.6E-27 5.6E-32 266.3 31.9 455 601-1070 6-481 (574)
14 COG0025 NhaP NhaP-type Na+/H+ 100.0 5.8E-26 1.2E-30 267.9 42.9 343 601-952 6-368 (429)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 5.9E-25 1.3E-29 266.3 38.9 357 613-975 21-403 (559)
16 PRK10537 voltage-gated potassi 99.9 3.3E-21 7.2E-26 224.7 29.1 146 1009-1156 240-386 (393)
17 KOG1965 Sodium/hydrogen exchan 99.8 9E-19 1.9E-23 206.3 26.9 341 601-949 35-413 (575)
18 PF02254 TrkA_N: TrkA-N domain 99.8 4.5E-19 9.8E-24 172.2 12.4 116 1012-1127 1-116 (116)
19 COG0569 TrkA K+ transport syst 99.7 7.4E-17 1.6E-21 175.7 12.9 138 1011-1148 2-141 (225)
20 PRK14853 nhaA pH-dependent sod 99.6 7.1E-13 1.5E-17 154.6 35.7 269 651-953 61-363 (423)
21 KOG4505 Na+/H+ antiporter [Ino 99.6 3.4E-13 7.4E-18 148.8 27.7 326 619-952 32-382 (467)
22 PRK09496 trkA potassium transp 99.6 1.5E-14 3.3E-19 172.0 13.7 138 1009-1147 231-370 (453)
23 PRK09496 trkA potassium transp 99.5 1.5E-13 3.2E-18 163.6 11.7 137 1011-1147 2-144 (453)
24 COG1226 Kch Kef-type K+ transp 99.4 8.1E-12 1.8E-16 129.9 14.8 144 1005-1148 17-161 (212)
25 KOG1966 Sodium/hydrogen exchan 99.4 8.5E-13 1.9E-17 155.5 7.3 316 626-947 68-406 (670)
26 TIGR00773 NhaA Na+/H+ antiport 99.3 2.3E-09 5.1E-14 123.4 29.4 268 651-953 51-344 (373)
27 PRK14856 nhaA pH-dependent sod 99.1 1.5E-08 3.2E-13 118.5 26.4 268 651-953 67-398 (438)
28 PRK14854 nhaA pH-dependent sod 98.9 6.2E-07 1.3E-11 103.4 28.5 269 651-953 55-348 (383)
29 PRK09560 nhaA pH-dependent sod 98.9 6.1E-07 1.3E-11 103.9 26.9 267 651-952 58-352 (389)
30 PRK09561 nhaA pH-dependent sod 98.8 9.2E-07 2E-11 102.3 26.2 268 651-953 58-351 (388)
31 PRK14855 nhaA pH-dependent sod 98.8 1.7E-06 3.6E-11 101.3 26.2 265 651-953 62-383 (423)
32 PF06965 Na_H_antiport_1: Na+/ 98.7 1.1E-07 2.3E-12 109.9 13.3 269 651-954 54-352 (378)
33 COG3004 NhaA Na+/H+ antiporter 98.7 1.6E-05 3.4E-10 89.1 27.7 265 653-954 63-355 (390)
34 PRK12460 2-keto-3-deoxyglucona 98.2 0.00018 3.8E-09 81.8 23.1 278 630-984 16-304 (312)
35 PF05684 DUF819: Protein of un 98.1 0.0047 1E-07 73.0 31.5 103 848-953 244-346 (378)
36 PF03812 KdgT: 2-keto-3-deoxyg 98.1 0.00046 1E-08 78.1 21.8 280 629-984 15-310 (314)
37 TIGR00210 gltS sodium--glutama 97.8 0.015 3.2E-07 69.2 30.2 107 842-949 243-356 (398)
38 PF03616 Glt_symporter: Sodium 97.8 0.018 4E-07 67.9 29.7 93 842-936 245-343 (368)
39 COG0786 GltS Na+/glutamate sym 97.6 0.0099 2.2E-07 69.3 22.8 97 836-932 235-341 (404)
40 TIGR00698 conserved hypothetic 97.5 0.077 1.7E-06 61.8 29.6 104 624-731 29-138 (335)
41 PF03601 Cons_hypoth698: Conse 97.5 0.021 4.5E-07 65.8 24.8 107 623-733 23-134 (305)
42 PRK06719 precorrin-2 dehydroge 97.5 0.00017 3.6E-09 75.0 5.9 82 1009-1097 13-94 (157)
43 TIGR00793 kdgT 2-keto-3-deoxyg 97.4 0.0042 9E-08 70.2 16.7 134 848-984 175-310 (314)
44 COG3180 AbrB Putative ammonia 97.4 0.47 1E-05 55.4 33.9 74 603-681 8-84 (352)
45 COG2855 Predicted membrane pro 97.3 0.21 4.6E-06 57.7 28.7 120 607-732 17-142 (334)
46 PF13593 DUF4137: SBF-like CPA 97.1 0.56 1.2E-05 54.4 29.8 106 653-762 29-139 (313)
47 COG0385 Predicted Na+-dependen 97.0 0.27 5.8E-06 56.8 25.1 103 652-762 35-143 (319)
48 PF05145 AmoA: Putative ammoni 96.7 1.2 2.6E-05 51.8 28.5 147 829-983 161-313 (318)
49 PRK11281 hypothetical protein; 96.7 4.5 9.7E-05 54.3 46.6 20 224-243 162-181 (1113)
50 PRK06718 precorrin-2 dehydroge 96.7 0.0031 6.7E-08 68.3 6.6 83 1009-1096 10-93 (202)
51 TIGR00841 bass bile acid trans 96.6 1.9 4.1E-05 49.3 28.9 98 659-762 12-113 (286)
52 PRK04148 hypothetical protein; 96.5 0.0088 1.9E-07 60.7 8.4 94 1010-1107 18-111 (134)
53 PRK03562 glutathione-regulated 96.5 0.065 1.4E-06 67.5 17.9 130 613-745 228-359 (621)
54 COG3493 CitS Na+/citrate sympo 96.5 2.6 5.7E-05 49.5 29.5 163 601-769 46-230 (438)
55 PRK03659 glutathione-regulated 96.5 0.086 1.9E-06 66.2 18.2 127 613-742 225-353 (601)
56 COG0798 ACR3 Arsenite efflux p 96.3 2.7 5.8E-05 48.9 27.3 136 628-768 19-163 (342)
57 cd01075 NAD_bind_Leu_Phe_Val_D 96.3 0.013 2.7E-07 63.5 8.3 102 1010-1123 29-135 (200)
58 PRK06522 2-dehydropantoate 2-r 96.3 0.022 4.8E-07 64.5 10.5 106 1011-1118 2-111 (304)
59 PF03601 Cons_hypoth698: Conse 96.2 0.1 2.2E-06 60.2 15.8 154 829-984 7-170 (305)
60 PRK10929 putative mechanosensi 96.2 8.1 0.00018 51.9 45.4 17 290-306 216-232 (1109)
61 PRK05274 2-keto-3-deoxyglucona 96.2 0.17 3.6E-06 58.9 17.0 134 849-991 178-316 (326)
62 TIGR00932 2a37 transporter, mo 96.1 0.13 2.9E-06 57.8 15.6 109 832-940 4-114 (273)
63 COG0679 Predicted permeases [G 96.1 4.1 8.8E-05 47.2 31.0 136 844-982 167-306 (311)
64 PLN03159 cation/H(+) antiporte 96.0 0.12 2.5E-06 67.4 16.7 86 656-742 323-412 (832)
65 PF00670 AdoHcyase_NAD: S-aden 96.0 0.011 2.4E-07 61.8 5.8 101 1009-1121 23-126 (162)
66 TIGR00832 acr3 arsenical-resis 95.9 1.1 2.5E-05 52.2 22.7 99 658-762 46-149 (328)
67 PRK10669 putative cation:proto 95.9 0.17 3.6E-06 63.0 16.7 111 829-939 15-126 (558)
68 TIGR02853 spore_dpaA dipicolin 95.8 0.068 1.5E-06 61.1 11.8 121 1009-1138 151-280 (287)
69 PF13460 NAD_binding_10: NADH( 95.8 0.04 8.7E-07 57.4 9.1 90 1012-1105 1-95 (183)
70 TIGR01470 cysG_Nterm siroheme 95.8 0.025 5.4E-07 61.5 7.6 83 1010-1098 10-94 (205)
71 COG0475 KefB Kef-type K+ trans 95.5 0.33 7.1E-06 58.1 16.2 113 828-941 14-131 (397)
72 TIGR00946 2a69 he Auxin Efflux 95.3 7.4 0.00016 45.0 28.4 134 845-981 182-318 (321)
73 PF03446 NAD_binding_2: NAD bi 95.3 0.078 1.7E-06 55.3 9.1 108 1011-1127 3-119 (163)
74 TIGR00518 alaDH alanine dehydr 95.3 0.056 1.2E-06 63.9 8.8 99 1010-1109 168-269 (370)
75 PF03956 DUF340: Membrane prot 95.2 0.17 3.7E-06 54.6 11.6 127 630-764 2-133 (191)
76 CHL00194 ycf39 Ycf39; Provisio 95.2 0.078 1.7E-06 60.8 9.6 71 1011-1082 2-73 (317)
77 PRK03818 putative transporter; 95.2 0.21 4.6E-06 62.1 13.7 127 601-731 6-138 (552)
78 PRK05326 potassium/proton anti 95.1 0.36 7.8E-06 60.2 15.8 115 829-943 15-133 (562)
79 TIGR00698 conserved hypothetic 95.1 0.39 8.4E-06 56.1 14.9 140 842-983 29-175 (335)
80 TIGR00783 ccs citrate carrier 95.1 5.4 0.00012 46.9 23.8 115 843-957 203-326 (347)
81 TIGR00844 c_cpa1 na(+)/h(+) an 95.0 0.36 7.8E-06 61.7 15.2 71 873-943 74-146 (810)
82 TIGR03802 Asp_Ala_antiprt aspa 94.9 0.15 3.2E-06 63.6 11.6 131 601-738 10-145 (562)
83 PF05368 NmrA: NmrA-like famil 94.9 0.14 3E-06 55.8 10.1 87 1012-1099 1-95 (233)
84 TIGR00831 a_cpa1 Na+/H+ antipo 94.9 0.33 7.1E-06 60.1 14.4 117 829-945 7-124 (525)
85 COG2855 Predicted membrane pro 94.9 0.34 7.4E-06 56.1 13.4 152 830-983 23-178 (334)
86 KOG0994 Extracellular matrix g 94.9 2.8 6E-05 54.6 21.9 68 260-327 1590-1664(1758)
87 COG1748 LYS9 Saccharopine dehy 94.8 0.15 3.3E-06 60.4 10.6 120 1010-1133 2-129 (389)
88 cd05211 NAD_bind_Glu_Leu_Phe_V 94.7 0.077 1.7E-06 58.3 7.3 113 1009-1131 23-152 (217)
89 PF02558 ApbA: Ketopantoate re 94.7 0.048 1E-06 55.5 5.4 103 1012-1119 1-113 (151)
90 TIGR03082 Gneg_AbrB_dup membra 94.7 0.46 9.9E-06 49.6 12.6 105 608-716 2-110 (156)
91 PRK12921 2-dehydropantoate 2-r 94.5 0.22 4.7E-06 56.6 10.8 106 1011-1118 2-113 (305)
92 PRK08306 dipicolinate synthase 94.5 0.27 5.9E-06 56.5 11.4 138 1009-1155 152-293 (296)
93 KOG4673 Transcription factor T 94.2 4.2 9E-05 50.6 20.6 91 264-360 512-602 (961)
94 TIGR00210 gltS sodium--glutama 94.1 1.9 4.2E-05 51.6 17.8 158 604-762 222-390 (398)
95 TIGR00872 gnd_rel 6-phosphoglu 94.1 0.33 7.2E-06 55.6 11.1 110 1011-1127 2-118 (298)
96 PRK09599 6-phosphogluconate de 94.1 0.43 9.2E-06 54.8 12.0 110 1011-1127 2-119 (301)
97 PRK12490 6-phosphogluconate de 94.0 0.32 6.9E-06 55.8 10.6 107 1012-1125 3-117 (299)
98 TIGR02964 xanthine_xdhC xanthi 93.9 0.33 7.2E-06 54.4 10.4 111 1008-1121 99-212 (246)
99 PRK05562 precorrin-2 dehydroge 93.8 0.25 5.3E-06 54.6 9.0 84 1009-1098 25-110 (223)
100 PRK12475 thiamine/molybdopteri 93.8 0.16 3.5E-06 59.4 8.0 88 1009-1098 24-141 (338)
101 cd01065 NAD_bind_Shikimate_DH 93.8 0.18 4E-06 51.3 7.5 109 1009-1123 19-135 (155)
102 PF13241 NAD_binding_7: Putati 93.5 0.15 3.2E-06 49.4 5.9 79 1009-1098 7-85 (103)
103 PF03435 Saccharop_dh: Sacchar 93.5 0.19 4.2E-06 59.3 8.0 115 1012-1131 1-126 (386)
104 PF06826 Asp-Al_Ex: Predicted 93.4 1.1 2.3E-05 47.7 12.4 120 613-734 5-135 (169)
105 TIGR03649 ergot_EASG ergot alk 93.3 0.29 6.4E-06 54.9 8.8 116 1012-1131 2-139 (285)
106 PLN02494 adenosylhomocysteinas 93.2 0.22 4.8E-06 60.3 8.0 100 1009-1119 254-355 (477)
107 PRK04972 putative transporter; 93.2 0.89 1.9E-05 56.8 13.5 105 601-713 12-120 (558)
108 KOG0994 Extracellular matrix g 93.2 3.7 8.1E-05 53.5 18.5 66 267-332 1583-1655(1758)
109 TIGR00936 ahcY adenosylhomocys 93.1 0.21 4.6E-06 59.7 7.6 67 1009-1084 195-261 (406)
110 PRK05476 S-adenosyl-L-homocyst 93.0 0.18 3.9E-06 60.7 6.7 100 1009-1119 212-313 (425)
111 PF05145 AmoA: Putative ammoni 93.0 1.3 2.9E-05 51.4 13.6 112 602-717 153-268 (318)
112 PTZ00075 Adenosylhomocysteinas 92.8 0.31 6.8E-06 59.1 8.5 101 1009-1120 254-356 (476)
113 TIGR01692 HIBADH 3-hydroxyisob 92.8 0.82 1.8E-05 52.1 11.5 105 1014-1127 1-115 (288)
114 PF03390 2HCT: 2-hydroxycarbox 92.8 28 0.00061 42.0 31.0 318 601-957 29-393 (414)
115 PF03616 Glt_symporter: Sodium 92.7 4.4 9.6E-05 48.1 17.6 119 610-728 230-356 (368)
116 TIGR02168 SMC_prok_B chromosom 92.7 15 0.00032 49.5 24.7 14 152-165 709-722 (1179)
117 COG1893 ApbA Ketopantoate redu 92.6 0.52 1.1E-05 54.5 9.6 112 1011-1123 2-117 (307)
118 PRK04863 mukB cell division pr 92.5 3.8 8.2E-05 56.6 18.8 31 335-365 446-476 (1486)
119 PLN02819 lysine-ketoglutarate 92.5 1.2 2.5E-05 59.2 13.5 122 1008-1133 568-709 (1042)
120 PRK05993 short chain dehydroge 92.5 0.22 4.8E-06 55.8 6.2 71 1010-1080 5-83 (277)
121 PRK05708 2-dehydropantoate 2-r 92.5 0.61 1.3E-05 53.7 10.0 114 1010-1125 3-123 (305)
122 PLN00141 Tic62-NAD(P)-related 92.4 0.71 1.5E-05 51.0 10.1 74 1009-1082 17-94 (251)
123 TIGR03082 Gneg_AbrB_dup membra 92.3 6 0.00013 41.3 16.2 117 830-952 5-127 (156)
124 cd01078 NAD_bind_H4MPT_DH NADP 92.2 0.43 9.3E-06 51.0 7.8 76 1010-1086 29-110 (194)
125 PRK07417 arogenate dehydrogena 92.1 0.41 8.9E-06 54.3 7.9 68 1011-1085 2-69 (279)
126 cd00401 AdoHcyase S-adenosyl-L 92.1 0.37 8E-06 57.8 7.8 67 1009-1084 202-268 (413)
127 PRK11064 wecC UDP-N-acetyl-D-m 92.1 0.65 1.4E-05 55.9 9.9 73 1010-1084 4-86 (415)
128 PF01758 SBF: Sodium Bile acid 92.0 12 0.00026 39.9 18.6 98 659-762 2-104 (187)
129 TIGR03802 Asp_Ala_antiprt aspa 92.0 1.7 3.7E-05 54.4 13.8 106 628-735 417-530 (562)
130 TIGR01625 YidE_YbjL_dupl AspT/ 92.0 2 4.4E-05 44.9 12.2 106 629-736 24-138 (154)
131 PRK08229 2-dehydropantoate 2-r 92.0 0.58 1.3E-05 54.3 9.2 105 1010-1118 3-118 (341)
132 PRK00094 gpsA NAD(P)H-dependen 92.0 0.35 7.6E-06 55.4 7.3 93 1011-1107 3-105 (325)
133 PRK03818 putative transporter; 91.8 3.6 7.7E-05 51.5 16.2 128 604-733 372-514 (552)
134 PRK08017 oxidoreductase; Provi 91.7 0.3 6.5E-06 53.5 6.1 59 1010-1068 3-62 (256)
135 PLN02688 pyrroline-5-carboxyla 91.7 1.1 2.4E-05 50.1 10.7 104 1012-1125 3-113 (266)
136 COG2985 Predicted permease [Ge 91.7 1.6 3.4E-05 52.7 12.1 124 610-739 13-147 (544)
137 PRK09903 putative transporter 91.6 31 0.00067 39.9 30.2 132 846-982 174-309 (314)
138 PRK11559 garR tartronate semia 91.6 1.3 2.8E-05 50.5 11.2 108 1011-1127 4-121 (296)
139 TIGR01505 tartro_sem_red 2-hyd 91.6 1.1 2.3E-05 51.1 10.5 107 1012-1127 2-118 (291)
140 COG0499 SAM1 S-adenosylhomocys 91.5 0.28 6.1E-06 57.0 5.7 67 1009-1084 209-275 (420)
141 TIGR02680 conserved hypothetic 91.5 16 0.00034 50.7 23.0 122 110-243 705-832 (1353)
142 PRK14106 murD UDP-N-acetylmura 91.5 0.41 8.9E-06 57.7 7.4 74 1009-1088 5-83 (450)
143 PRK15178 Vi polysaccharide exp 91.3 9.4 0.0002 46.3 18.3 56 176-246 215-270 (434)
144 TIGR02169 SMC_prok_A chromosom 91.3 14 0.0003 49.9 22.2 47 269-315 295-341 (1164)
145 PF03721 UDPG_MGDP_dh_N: UDP-g 91.3 0.18 3.8E-06 54.1 3.6 129 1011-1141 2-165 (185)
146 COG1648 CysG Siroheme synthase 91.3 0.53 1.2E-05 51.5 7.3 84 1009-1098 12-97 (210)
147 COG1023 Gnd Predicted 6-phosph 91.1 1.1 2.3E-05 49.8 9.2 108 1013-1125 4-117 (300)
148 COG1196 Smc Chromosome segrega 91.0 11 0.00023 51.5 20.6 22 1090-1111 1109-1130(1163)
149 PF03807 F420_oxidored: NADP o 91.0 0.63 1.4E-05 43.7 6.6 85 1012-1105 2-91 (96)
150 PRK06182 short chain dehydroge 90.8 0.41 9E-06 53.3 6.2 73 1010-1082 4-83 (273)
151 PLN03209 translocon at the inn 90.6 1.3 2.8E-05 55.2 10.5 73 1010-1083 81-169 (576)
152 cd05291 HicDH_like L-2-hydroxy 90.6 0.32 6.9E-06 56.0 5.1 91 1011-1108 2-118 (306)
153 KOG0996 Structural maintenance 90.5 15 0.00033 48.6 19.8 71 666-736 1175-1245(1293)
154 TIGR03185 DNA_S_dndD DNA sulfu 90.5 25 0.00054 45.0 22.2 55 261-315 421-475 (650)
155 PRK14620 NAD(P)H-dependent gly 90.5 0.62 1.3E-05 53.9 7.3 101 1011-1112 2-111 (326)
156 PRK07688 thiamine/molybdopteri 90.3 0.8 1.7E-05 53.7 8.1 88 1009-1098 24-141 (339)
157 COG1196 Smc Chromosome segrega 90.3 12 0.00026 51.0 20.1 61 268-328 835-895 (1163)
158 PF06008 Laminin_I: Laminin Do 90.2 14 0.0003 41.9 17.6 103 154-256 44-177 (264)
159 TIGR03466 HpnA hopanoid-associ 90.2 0.41 8.9E-06 54.2 5.5 69 1012-1081 3-72 (328)
160 PRK04972 putative transporter; 90.1 4.1 8.8E-05 51.1 14.4 130 604-735 384-525 (558)
161 PTZ00142 6-phosphogluconate de 90.1 1.7 3.6E-05 53.3 10.8 113 1011-1127 3-126 (470)
162 PRK15059 tartronate semialdehy 90.1 1.4 3E-05 50.6 9.7 106 1012-1127 3-118 (292)
163 COG0786 GltS Na+/glutamate sym 90.0 7.4 0.00016 46.2 15.3 118 612-729 233-358 (404)
164 TIGR02169 SMC_prok_A chromosom 90.0 55 0.0012 44.2 26.1 8 1032-1039 1096-1103(1164)
165 PRK15461 NADH-dependent gamma- 89.9 1.3 2.9E-05 50.7 9.4 108 1011-1127 3-120 (296)
166 PRK09260 3-hydroxybutyryl-CoA 89.9 0.61 1.3E-05 53.1 6.6 72 1011-1085 3-93 (288)
167 PF10727 Rossmann-like: Rossma 89.8 0.47 1E-05 48.0 4.8 105 1009-1121 10-120 (127)
168 PF00261 Tropomyosin: Tropomyo 89.8 16 0.00034 40.8 17.3 168 150-325 59-226 (237)
169 TIGR00873 gnd 6-phosphoglucona 89.7 2.2 4.7E-05 52.3 11.4 112 1012-1127 2-123 (467)
170 cd05213 NAD_bind_Glutamyl_tRNA 89.6 1.1 2.4E-05 51.8 8.5 98 1009-1113 178-278 (311)
171 TIGR00946 2a69 he Auxin Efflux 89.5 6.3 0.00014 45.6 14.6 114 620-736 176-290 (321)
172 PRK06249 2-dehydropantoate 2-r 89.5 2.7 5.8E-05 48.5 11.4 106 1010-1118 6-117 (313)
173 TIGR03136 malonate_biotin Na+- 89.4 53 0.0011 39.0 24.5 119 608-729 26-174 (399)
174 PF03977 OAD_beta: Na+-transpo 89.2 52 0.0011 38.7 28.2 116 609-728 8-136 (360)
175 PF07991 IlvN: Acetohydroxy ac 89.2 0.24 5.3E-06 51.9 2.4 67 1010-1085 5-72 (165)
176 PRK06129 3-hydroxyacyl-CoA deh 89.1 1.9 4.2E-05 49.6 9.9 103 1011-1114 4-124 (308)
177 KOG3826 Na+/H+ antiporter [Ino 89.0 0.29 6.4E-06 53.7 2.9 135 601-735 97-238 (252)
178 PRK05225 ketol-acid reductoiso 88.8 0.35 7.7E-06 58.2 3.7 70 1009-1087 36-111 (487)
179 PRK06545 prephenate dehydrogen 88.8 0.92 2E-05 53.5 7.2 80 1011-1095 2-81 (359)
180 PRK07502 cyclohexadienyl dehyd 88.7 1.3 2.9E-05 50.8 8.2 70 1010-1085 7-78 (307)
181 PLN02427 UDP-apiose/xylose syn 88.7 0.9 2E-05 53.6 7.0 70 1011-1081 16-94 (386)
182 TIGR03026 NDP-sugDHase nucleot 88.6 0.88 1.9E-05 54.5 6.9 72 1011-1085 2-88 (411)
183 PRK01438 murD UDP-N-acetylmura 88.4 1.2 2.6E-05 54.3 8.1 72 1009-1087 16-92 (480)
184 PRK09291 short chain dehydroge 88.4 1 2.2E-05 49.3 6.8 73 1010-1082 3-82 (257)
185 PRK08507 prephenate dehydrogen 88.4 0.91 2E-05 51.3 6.5 87 1011-1107 2-90 (275)
186 PRK10637 cysG siroheme synthas 88.2 1.5 3.2E-05 53.5 8.6 84 1009-1098 12-97 (457)
187 PLN02657 3,8-divinyl protochlo 88.1 1.8 4E-05 51.5 9.2 71 1011-1081 62-144 (390)
188 PRK00048 dihydrodipicolinate r 88.1 3.3 7.1E-05 46.7 10.6 124 1011-1145 3-133 (257)
189 TIGR00465 ilvC ketol-acid redu 88.1 1.8 3.9E-05 50.3 8.8 66 1010-1084 4-70 (314)
190 TIGR02680 conserved hypothetic 88.0 74 0.0016 44.4 25.2 38 269-306 348-385 (1353)
191 COG5374 Uncharacterized conser 88.0 0.97 2.1E-05 47.7 5.8 51 274-324 142-192 (192)
192 PF03547 Mem_trans: Membrane t 87.9 63 0.0014 38.1 26.0 131 845-978 244-383 (385)
193 PLN02695 GDP-D-mannose-3',5'-e 87.6 2.4 5.3E-05 50.0 9.7 72 1009-1081 21-93 (370)
194 COG1346 LrgB Putative effector 87.5 25 0.00054 39.1 16.3 89 891-983 83-171 (230)
195 PRK14618 NAD(P)H-dependent gly 87.4 2.1 4.6E-05 49.6 8.9 93 1011-1108 6-105 (328)
196 PRK05693 short chain dehydroge 87.4 0.98 2.1E-05 50.3 6.0 72 1011-1082 3-81 (274)
197 PF05701 WEMBL: Weak chloropla 87.4 40 0.00087 42.1 20.4 56 282-345 372-427 (522)
198 PF13478 XdhC_C: XdhC Rossmann 87.4 0.64 1.4E-05 47.5 4.1 92 1012-1111 1-92 (136)
199 PRK12460 2-keto-3-deoxyglucona 87.3 4.3 9.4E-05 46.9 11.0 96 629-728 169-266 (312)
200 COG3180 AbrB Putative ammonia 87.0 8.8 0.00019 45.2 13.4 109 604-716 188-300 (352)
201 PF00038 Filament: Intermediat 86.9 15 0.00033 42.2 15.4 154 150-310 98-251 (312)
202 TIGR00783 ccs citrate carrier 86.9 7.3 0.00016 45.9 12.7 108 613-722 191-306 (347)
203 COG2431 Predicted membrane pro 86.9 2.9 6.4E-05 47.2 9.0 91 628-722 108-202 (297)
204 PRK07326 short chain dehydroge 86.9 1.1 2.4E-05 48.3 5.9 72 1010-1081 7-90 (237)
205 PRK01710 murD UDP-N-acetylmura 86.8 1.9 4.2E-05 52.4 8.5 86 1010-1104 15-105 (458)
206 PF01488 Shikimate_DH: Shikima 86.8 0.63 1.4E-05 47.1 3.6 74 1009-1086 12-88 (135)
207 PF01408 GFO_IDH_MocA: Oxidore 86.8 5.3 0.00012 38.7 10.1 97 1011-1116 2-105 (120)
208 PRK11880 pyrroline-5-carboxyla 86.7 2.5 5.3E-05 47.4 8.7 66 1011-1084 4-73 (267)
209 COG2084 MmsB 3-hydroxyisobutyr 86.7 2.4 5.2E-05 48.7 8.5 108 1011-1127 2-120 (286)
210 PF00072 Response_reg: Respons 86.7 5.2 0.00011 37.6 9.7 99 1035-1133 1-106 (112)
211 PRK12491 pyrroline-5-carboxyla 86.6 5.4 0.00012 45.4 11.3 99 1010-1118 3-107 (272)
212 PRK13302 putative L-aspartate 86.6 2.8 6E-05 47.7 9.0 114 1010-1133 7-129 (271)
213 PRK08264 short chain dehydroge 86.4 1.6 3.6E-05 47.2 6.9 73 1010-1083 7-83 (238)
214 PLN02896 cinnamyl-alcohol dehy 86.4 1.4 2.9E-05 51.4 6.6 73 1009-1082 10-88 (353)
215 PRK06019 phosphoribosylaminoim 86.4 0.85 1.9E-05 53.9 5.0 108 1011-1123 4-115 (372)
216 TIGR03025 EPS_sugtrans exopoly 86.4 16 0.00034 44.4 15.9 91 1009-1105 125-222 (445)
217 PRK06953 short chain dehydroge 86.0 2.4 5.2E-05 45.7 7.9 71 1012-1082 4-79 (222)
218 PF04012 PspA_IM30: PspA/IM30 86.0 32 0.00069 37.7 16.7 60 150-221 32-91 (221)
219 PRK06101 short chain dehydroge 86.0 1.2 2.7E-05 48.6 5.7 59 1011-1069 3-64 (240)
220 TIGR02356 adenyl_thiF thiazole 86.0 2 4.3E-05 46.6 7.1 88 1009-1098 21-136 (202)
221 PLN02350 phosphogluconate dehy 85.9 4.3 9.3E-05 50.0 10.7 114 1011-1127 8-132 (493)
222 PRK13403 ketol-acid reductoiso 85.9 3 6.5E-05 48.6 8.8 68 1010-1086 17-84 (335)
223 PRK15057 UDP-glucose 6-dehydro 85.8 4 8.8E-05 48.8 10.3 70 1012-1084 3-84 (388)
224 PRK06130 3-hydroxybutyryl-CoA 85.8 3.5 7.5E-05 47.4 9.4 75 1010-1085 5-91 (311)
225 PF01210 NAD_Gly3P_dh_N: NAD-d 85.6 1.4 3E-05 45.8 5.5 70 1012-1087 2-83 (157)
226 TIGR01109 Na_pump_decarbB sodi 85.6 81 0.0018 37.0 23.1 112 612-726 8-134 (354)
227 PLN02256 arogenate dehydrogena 85.4 2.8 6.1E-05 48.5 8.4 68 1009-1084 36-103 (304)
228 PF05276 SH3BP5: SH3 domain-bi 85.3 11 0.00024 42.3 12.6 154 152-319 18-172 (239)
229 PF12128 DUF3584: Protein of u 85.2 1.1E+02 0.0023 42.4 24.3 93 273-365 605-698 (1201)
230 PRK05884 short chain dehydroge 85.2 1.4 3.1E-05 47.8 5.7 69 1012-1080 3-76 (223)
231 COG0287 TyrA Prephenate dehydr 85.2 2.2 4.8E-05 48.8 7.3 108 1009-1122 3-114 (279)
232 cd01076 NAD_bind_1_Glu_DH NAD( 85.1 2.1 4.6E-05 47.4 7.0 107 1009-1123 31-155 (227)
233 PLN02650 dihydroflavonol-4-red 85.1 1.1 2.5E-05 51.9 5.2 72 1009-1081 5-85 (351)
234 PRK06914 short chain dehydroge 85.1 1.4 3E-05 49.2 5.6 73 1010-1082 4-90 (280)
235 TIGR02354 thiF_fam2 thiamine b 85.1 3.8 8.2E-05 44.5 8.8 95 1009-1105 21-142 (200)
236 PRK05808 3-hydroxybutyryl-CoA 85.0 5.1 0.00011 45.4 10.2 36 1011-1046 5-40 (282)
237 PRK11908 NAD-dependent epimera 85.0 1.6 3.6E-05 50.5 6.4 67 1011-1078 3-73 (347)
238 PRK10698 phage shock protein P 85.0 63 0.0014 35.9 18.3 36 150-185 33-68 (222)
239 PRK08293 3-hydroxybutyryl-CoA 85.0 3.6 7.8E-05 46.8 9.0 40 1010-1049 4-43 (287)
240 PRK07454 short chain dehydroge 84.8 1.5 3.3E-05 47.6 5.7 73 1010-1082 7-92 (241)
241 PF03977 OAD_beta: Na+-transpo 84.8 16 0.00035 42.6 13.8 74 874-949 68-141 (360)
242 PRK08644 thiamine biosynthesis 84.7 5.5 0.00012 43.7 9.9 87 1009-1097 28-141 (212)
243 COG1004 Ugd Predicted UDP-gluc 84.7 4.4 9.6E-05 48.2 9.6 72 1011-1084 2-87 (414)
244 PLN02686 cinnamoyl-CoA reducta 84.6 1.6 3.4E-05 51.5 6.1 70 1008-1078 52-133 (367)
245 PRK08219 short chain dehydroge 84.6 1.9 4.1E-05 46.1 6.3 71 1011-1082 5-80 (227)
246 COG2085 Predicted dinucleotide 84.4 3.5 7.5E-05 45.2 8.0 121 1011-1142 3-125 (211)
247 COG1086 Predicted nucleoside-d 84.4 18 0.00039 45.0 14.8 76 1007-1087 114-191 (588)
248 COG2910 Putative NADH-flavin r 84.4 1.5 3.2E-05 47.1 5.0 71 1011-1084 3-73 (211)
249 PRK03369 murD UDP-N-acetylmura 84.3 2.4 5.1E-05 52.2 7.6 73 1009-1087 12-84 (488)
250 PF00999 Na_H_Exchanger: Sodiu 84.1 0.36 7.9E-06 56.6 0.5 111 832-942 8-124 (380)
251 cd01483 E1_enzyme_family Super 84.1 2.7 5.9E-05 42.6 6.8 86 1011-1098 1-114 (143)
252 PRK07680 late competence prote 84.0 5.6 0.00012 44.9 9.9 98 1012-1119 3-107 (273)
253 PRK07060 short chain dehydroge 83.9 1.8 3.8E-05 47.0 5.7 73 1010-1082 10-86 (245)
254 COG5420 Uncharacterized conser 83.9 3.1 6.7E-05 36.8 5.8 52 295-346 5-62 (71)
255 PRK07024 short chain dehydroge 83.8 1.7 3.6E-05 48.0 5.5 72 1010-1081 3-86 (257)
256 PLN02662 cinnamyl-alcohol dehy 83.7 1.6 3.5E-05 49.6 5.5 71 1010-1081 5-84 (322)
257 PRK04288 antiholin-like protei 83.7 50 0.0011 37.0 16.7 89 891-983 86-174 (232)
258 PHA02562 46 endonuclease subun 83.6 1.1E+02 0.0025 37.9 22.1 29 217-245 254-282 (562)
259 PF02826 2-Hacid_dh_C: D-isome 83.6 3.4 7.3E-05 43.8 7.5 88 1009-1105 36-125 (178)
260 TIGR03023 WcaJ_sugtrans Undeca 83.6 21 0.00045 43.4 15.2 91 1009-1104 128-224 (451)
261 PF03390 2HCT: 2-hydroxycarbox 83.4 58 0.0012 39.5 18.1 109 612-722 257-373 (414)
262 PRK09424 pntA NAD(P) transhydr 83.4 4.2 9.2E-05 50.3 9.2 101 1009-1109 165-287 (509)
263 PRK02318 mannitol-1-phosphate 83.3 4.1 8.9E-05 48.5 8.9 44 1011-1054 2-46 (381)
264 KOG1420 Ca2+-activated K+ chan 83.3 0.73 1.6E-05 55.6 2.5 152 1001-1154 349-527 (1103)
265 PRK15116 sulfur acceptor prote 83.2 5 0.00011 45.7 9.0 90 1009-1098 30-146 (268)
266 COG0240 GpsA Glycerol-3-phosph 83.2 3.2 6.8E-05 48.4 7.5 74 1011-1084 3-82 (329)
267 COG0025 NhaP NhaP-type Na+/H+ 83.1 11 0.00023 45.9 12.3 74 874-947 63-138 (429)
268 PF00056 Ldh_1_N: lactate/mala 83.0 2.5 5.5E-05 43.2 6.1 92 1011-1108 2-119 (141)
269 PRK12828 short chain dehydroge 83.0 2.3 5E-05 45.7 6.1 73 1010-1082 8-91 (239)
270 PRK06949 short chain dehydroge 83.0 2 4.3E-05 47.1 5.7 73 1010-1082 10-95 (258)
271 cd02067 B12-binding B12 bindin 83.0 5.7 0.00012 39.0 8.4 71 1063-1133 40-115 (119)
272 PRK08655 prephenate dehydrogen 83.0 3.8 8.2E-05 49.8 8.5 69 1011-1087 2-72 (437)
273 PRK12439 NAD(P)H-dependent gly 82.9 2.7 5.9E-05 49.2 7.1 100 1009-1111 7-115 (341)
274 PLN02712 arogenate dehydrogena 82.9 6.8 0.00015 50.2 11.0 106 1009-1124 369-481 (667)
275 PF00899 ThiF: ThiF family; I 82.9 2.4 5.1E-05 42.7 5.7 88 1009-1098 2-117 (135)
276 PRK07074 short chain dehydroge 82.8 2.6 5.7E-05 46.3 6.5 72 1011-1082 4-86 (257)
277 PRK09903 putative transporter 82.8 76 0.0017 36.7 18.7 108 625-736 172-280 (314)
278 PF12128 DUF3584: Protein of u 82.7 76 0.0016 43.7 21.4 27 149-175 314-340 (1201)
279 PRK08265 short chain dehydroge 82.7 1.9 4.1E-05 47.8 5.4 72 1010-1081 7-88 (261)
280 COG1064 AdhP Zn-dependent alco 82.6 4.3 9.4E-05 47.6 8.4 72 1009-1082 167-238 (339)
281 PRK06483 dihydromonapterin red 82.6 2.5 5.5E-05 45.8 6.2 72 1010-1081 3-82 (236)
282 PF03956 DUF340: Membrane prot 82.6 8.2 0.00018 41.8 9.9 126 848-981 2-136 (191)
283 TIGR01181 dTDP_gluc_dehyt dTDP 82.6 4.4 9.6E-05 45.5 8.4 70 1012-1082 2-82 (317)
284 PRK06924 short chain dehydroge 82.5 2.2 4.8E-05 46.6 5.8 58 1011-1068 3-65 (251)
285 PRK09072 short chain dehydroge 82.4 1.9 4.2E-05 47.6 5.4 73 1010-1082 6-89 (263)
286 PRK00141 murD UDP-N-acetylmura 82.4 3.7 8E-05 50.2 8.2 73 1009-1087 15-88 (473)
287 PLN02989 cinnamyl-alcohol dehy 82.4 2.4 5.2E-05 48.5 6.3 73 1009-1082 5-86 (325)
288 KOG1650 Predicted K+/H+-antipo 82.4 8.5 0.00019 50.0 11.7 86 655-742 310-397 (769)
289 PF05701 WEMBL: Weak chloropla 82.4 79 0.0017 39.5 19.7 52 265-316 278-329 (522)
290 PF00289 CPSase_L_chain: Carba 82.3 1.6 3.4E-05 43.1 4.0 86 1010-1095 3-96 (110)
291 PRK07231 fabG 3-ketoacyl-(acyl 82.3 2.2 4.8E-05 46.3 5.7 73 1010-1082 6-90 (251)
292 PRK06035 3-hydroxyacyl-CoA deh 82.3 2.2 4.8E-05 48.6 5.9 39 1010-1048 4-42 (291)
293 PF13514 AAA_27: AAA domain 82.3 94 0.002 42.5 21.9 27 158-184 746-772 (1111)
294 PLN02353 probable UDP-glucose 82.3 5.1 0.00011 49.2 9.3 71 1012-1084 4-89 (473)
295 PRK07530 3-hydroxybutyryl-CoA 82.2 7.8 0.00017 44.2 10.3 39 1010-1048 5-43 (292)
296 PLN02583 cinnamoyl-CoA reducta 82.2 3.4 7.4E-05 47.0 7.4 70 1009-1079 6-84 (297)
297 PF02310 B12-binding: B12 bind 82.2 5.9 0.00013 38.6 8.1 89 1022-1128 18-112 (121)
298 PRK07679 pyrroline-5-carboxyla 82.2 9.2 0.0002 43.4 10.8 87 1011-1107 5-98 (279)
299 PLN02712 arogenate dehydrogena 82.2 4.4 9.6E-05 51.8 9.0 94 1008-1111 51-146 (667)
300 TIGR00659 conserved hypothetic 82.1 59 0.0013 36.3 16.4 88 892-983 81-168 (226)
301 COG4651 RosB Kef-type K+ trans 81.8 10 0.00022 43.6 10.5 115 828-943 14-130 (408)
302 PRK06482 short chain dehydroge 81.7 2.3 5E-05 47.4 5.7 72 1010-1081 3-84 (276)
303 PRK02705 murD UDP-N-acetylmura 81.7 3.9 8.4E-05 49.5 8.0 76 1011-1087 2-82 (459)
304 PRK10538 malonic semialdehyde 81.7 2.2 4.8E-05 46.8 5.5 70 1012-1081 3-82 (248)
305 PRK12939 short chain dehydroge 81.6 2.1 4.5E-05 46.5 5.2 73 1010-1082 8-93 (250)
306 PRK06180 short chain dehydroge 81.5 2.4 5.3E-05 47.4 5.8 73 1010-1082 5-87 (277)
307 PRK10711 hypothetical protein; 81.5 42 0.0009 37.6 15.0 88 892-983 82-169 (231)
308 PRK11281 hypothetical protein; 81.5 25 0.00054 47.6 15.7 103 196-304 62-164 (1113)
309 PRK11199 tyrA bifunctional cho 81.5 2.9 6.4E-05 49.7 6.7 35 1008-1042 97-132 (374)
310 PLN00016 RNA-binding protein; 81.5 4.4 9.5E-05 47.8 8.2 89 1009-1099 52-157 (378)
311 TIGR02977 phageshock_pspA phag 81.4 91 0.002 34.4 20.5 49 150-198 33-81 (219)
312 COG1842 PspA Phage shock prote 81.4 59 0.0013 36.3 16.2 60 150-221 33-92 (225)
313 PRK06940 short chain dehydroge 81.3 2 4.4E-05 48.2 5.1 72 1009-1081 2-84 (275)
314 PRK15181 Vi polysaccharide bio 81.3 2.6 5.6E-05 49.1 6.1 71 1010-1081 16-98 (348)
315 cd01080 NAD_bind_m-THF_DH_Cycl 81.3 2.3 4.9E-05 45.1 5.1 55 1009-1085 44-99 (168)
316 KOG1201 Hydroxysteroid 17-beta 81.2 16 0.00035 42.1 11.9 80 1010-1105 39-119 (300)
317 TIGR01915 npdG NADPH-dependent 81.2 5.4 0.00012 43.6 8.1 90 1012-1110 3-103 (219)
318 PF01262 AlaDh_PNT_C: Alanine 81.1 1.5 3.2E-05 46.1 3.6 97 1009-1106 20-137 (168)
319 TIGR01763 MalateDH_bact malate 81.1 3.3 7.2E-05 47.9 6.8 92 1011-1108 3-119 (305)
320 KOG1370 S-adenosylhomocysteine 81.1 3.7 8E-05 47.0 6.8 77 1009-1096 214-290 (434)
321 PRK08267 short chain dehydroge 81.1 2.4 5.3E-05 46.6 5.5 72 1011-1082 3-86 (260)
322 PRK06179 short chain dehydroge 81.1 2 4.3E-05 47.6 4.9 71 1010-1082 5-82 (270)
323 PRK07774 short chain dehydroge 81.0 2.3 5E-05 46.3 5.3 73 1010-1082 7-92 (250)
324 PRK08177 short chain dehydroge 80.9 2.8 6.1E-05 45.3 5.8 71 1011-1081 3-79 (225)
325 TIGR01142 purT phosphoribosylg 80.9 2.4 5.1E-05 49.9 5.7 70 1012-1083 2-72 (380)
326 TIGR03589 PseB UDP-N-acetylglu 80.6 2.8 6E-05 48.4 6.0 70 1011-1081 6-82 (324)
327 PRK06194 hypothetical protein; 80.5 2.3 4.9E-05 47.6 5.1 73 1010-1082 7-92 (287)
328 KOG0161 Myosin class II heavy 80.4 1E+02 0.0022 44.2 21.0 162 149-326 1523-1697(1930)
329 TIGR01318 gltD_gamma_fam gluta 80.3 2.8 6E-05 51.3 6.1 76 1008-1084 140-237 (467)
330 PRK00066 ldh L-lactate dehydro 80.2 6.9 0.00015 45.5 9.0 92 1010-1108 7-123 (315)
331 PRK12429 3-hydroxybutyrate deh 80.2 2.5 5.4E-05 46.1 5.2 73 1010-1082 5-90 (258)
332 PRK07523 gluconate 5-dehydroge 80.2 2.4 5.1E-05 46.6 5.0 73 1010-1082 11-96 (255)
333 PLN00106 malate dehydrogenase 80.0 4.4 9.5E-05 47.3 7.3 102 1009-1111 18-139 (323)
334 TIGR03136 malonate_biotin Na+- 80.0 45 0.00097 39.6 15.1 75 874-949 104-178 (399)
335 PF00070 Pyr_redox: Pyridine n 80.0 1.6 3.5E-05 39.8 3.0 34 1011-1044 1-34 (80)
336 PRK07067 sorbitol dehydrogenas 80.0 2.7 5.9E-05 46.2 5.4 72 1010-1081 7-88 (257)
337 PRK12829 short chain dehydroge 80.0 2.7 5.9E-05 46.1 5.4 73 1010-1082 12-95 (264)
338 PRK05565 fabG 3-ketoacyl-(acyl 79.9 2.5 5.4E-05 45.8 5.0 73 1010-1082 6-92 (247)
339 PLN02545 3-hydroxybutyryl-CoA 79.8 10 0.00022 43.3 10.2 38 1010-1047 5-42 (295)
340 COG1179 Dinucleotide-utilizing 79.8 2.5 5.4E-05 47.2 4.9 100 1009-1131 30-132 (263)
341 PRK08339 short chain dehydroge 79.8 2.7 5.8E-05 46.9 5.3 72 1010-1081 9-93 (263)
342 COG0026 PurK Phosphoribosylami 79.7 2.7 5.8E-05 49.5 5.4 107 1011-1122 3-113 (375)
343 TIGR01161 purK phosphoribosyla 79.7 2.9 6.3E-05 48.9 5.8 106 1012-1122 2-112 (352)
344 PRK06057 short chain dehydroge 79.7 3.5 7.5E-05 45.4 6.1 73 1010-1082 8-88 (255)
345 PRK07825 short chain dehydroge 79.6 3 6.6E-05 46.3 5.7 72 1010-1081 6-86 (273)
346 TIGR01472 gmd GDP-mannose 4,6- 79.5 3.2 7E-05 48.0 6.1 71 1011-1081 2-86 (343)
347 PRK05866 short chain dehydroge 79.5 3.8 8.2E-05 46.6 6.5 72 1010-1081 41-125 (293)
348 TIGR00561 pntA NAD(P) transhyd 79.3 7 0.00015 48.4 9.0 101 1009-1109 164-286 (511)
349 cd05292 LDH_2 A subgroup of L- 78.9 3.4 7.3E-05 47.8 5.9 93 1011-1110 2-119 (308)
350 PLN02214 cinnamoyl-CoA reducta 78.8 4 8.7E-05 47.5 6.6 72 1010-1082 11-90 (342)
351 PRK12826 3-ketoacyl-(acyl-carr 78.7 3.7 8E-05 44.5 5.9 72 1010-1081 7-91 (251)
352 PRK04778 septation ring format 78.7 1.4E+02 0.003 37.9 20.3 158 190-366 278-439 (569)
353 PRK07819 3-hydroxybutyryl-CoA 78.6 4.6 0.0001 46.2 6.9 38 1010-1047 6-43 (286)
354 PRK00045 hemA glutamyl-tRNA re 78.5 3.4 7.4E-05 49.9 6.1 74 1009-1088 182-257 (423)
355 PRK07831 short chain dehydroge 78.4 3.5 7.6E-05 45.5 5.7 73 1010-1082 18-106 (262)
356 PRK10263 DNA translocase FtsK; 78.4 29 0.00063 47.2 14.6 36 842-888 61-96 (1355)
357 COG0679 Predicted permeases [G 78.3 1.4E+02 0.003 34.7 21.3 107 625-734 167-275 (311)
358 COG0702 Predicted nucleoside-d 78.3 11 0.00023 41.5 9.5 69 1012-1082 3-72 (275)
359 PRK05867 short chain dehydroge 78.3 2.9 6.2E-05 46.0 4.9 72 1010-1081 10-94 (253)
360 PRK08217 fabG 3-ketoacyl-(acyl 78.1 3.3 7.1E-05 45.0 5.3 73 1010-1082 6-91 (253)
361 PRK06200 2,3-dihydroxy-2,3-dih 78.1 3.7 8.1E-05 45.3 5.8 72 1010-1081 7-88 (263)
362 PRK07814 short chain dehydroge 78.0 3.3 7.1E-05 45.9 5.3 72 1010-1081 11-95 (263)
363 PRK13394 3-hydroxybutyrate deh 78.0 3.3 7.1E-05 45.4 5.3 73 1010-1082 8-93 (262)
364 PRK07102 short chain dehydroge 77.9 2.8 6.1E-05 45.7 4.7 71 1011-1081 3-84 (243)
365 PRK06928 pyrroline-5-carboxyla 77.8 13 0.00028 42.2 10.2 100 1011-1118 3-108 (277)
366 PRK06196 oxidoreductase; Provi 77.8 3.6 7.8E-05 47.1 5.7 72 1010-1081 27-107 (315)
367 PRK08125 bifunctional UDP-gluc 77.8 3 6.6E-05 53.1 5.6 70 1009-1079 315-388 (660)
368 PRK13243 glyoxylate reductase; 77.8 4.8 0.0001 47.1 6.8 84 1009-1102 150-235 (333)
369 COG1087 GalE UDP-glucose 4-epi 77.7 4.5 9.8E-05 46.6 6.2 65 1016-1080 8-74 (329)
370 PRK09186 flagellin modificatio 77.6 3.9 8.4E-05 44.7 5.7 72 1010-1081 5-91 (256)
371 PF01073 3Beta_HSD: 3-beta hyd 77.5 3.2 6.8E-05 47.3 5.1 64 1016-1080 5-73 (280)
372 PF12718 Tropomyosin_1: Tropom 77.4 20 0.00043 37.1 10.4 61 269-329 15-75 (143)
373 PLN00198 anthocyanidin reducta 77.3 3.6 7.7E-05 47.5 5.5 71 1010-1081 10-88 (338)
374 COG3493 CitS Na+/citrate sympo 77.3 1E+02 0.0022 36.9 16.8 117 604-722 266-392 (438)
375 TIGR00745 apbA_panE 2-dehydrop 77.2 14 0.0003 41.6 10.1 98 1020-1118 2-104 (293)
376 PRK15182 Vi polysaccharide bio 77.1 9.6 0.00021 46.2 9.3 71 1011-1084 8-87 (425)
377 PRK06172 short chain dehydroge 77.1 3.6 7.7E-05 45.1 5.2 72 1010-1081 8-92 (253)
378 COG0373 HemA Glutamyl-tRNA red 77.1 5.8 0.00013 47.8 7.2 74 1009-1088 178-253 (414)
379 PRK08309 short chain dehydroge 77.0 4.1 8.9E-05 43.4 5.5 87 1011-1098 2-99 (177)
380 PRK08773 2-octaprenyl-3-methyl 76.9 2.1 4.5E-05 50.5 3.6 63 1010-1072 7-69 (392)
381 PRK05653 fabG 3-ketoacyl-(acyl 76.7 4.8 0.00011 43.3 6.1 72 1010-1081 6-90 (246)
382 PRK06181 short chain dehydroge 76.6 3.6 7.7E-05 45.4 5.1 71 1011-1081 3-86 (263)
383 PRK08213 gluconate 5-dehydroge 76.6 3.5 7.6E-05 45.4 5.0 73 1010-1082 13-98 (259)
384 PLN02735 carbamoyl-phosphate s 76.5 2.1 4.6E-05 57.6 3.8 79 1008-1086 573-662 (1102)
385 PRK14806 bifunctional cyclohex 76.4 7 0.00015 50.4 8.4 70 1010-1085 4-75 (735)
386 PRK12809 putative oxidoreducta 76.4 3.8 8.2E-05 52.1 5.9 76 1008-1084 309-406 (639)
387 PRK06138 short chain dehydroge 76.4 3.5 7.5E-05 44.9 4.9 73 1010-1082 6-90 (252)
388 PF12777 MT: Microtubule-bindi 76.4 16 0.00034 43.1 10.6 94 270-366 10-103 (344)
389 PF07888 CALCOCO1: Calcium bin 76.4 1.1E+02 0.0024 38.3 17.8 146 150-314 285-449 (546)
390 PRK05786 fabG 3-ketoacyl-(acyl 76.3 4 8.7E-05 44.1 5.3 73 1010-1082 6-90 (238)
391 PRK12548 shikimate 5-dehydroge 76.3 6.8 0.00015 44.9 7.4 114 1009-1123 126-255 (289)
392 PF04172 LrgB: LrgB-like famil 76.2 62 0.0013 35.9 14.3 88 892-983 71-158 (215)
393 PRK07066 3-hydroxybutyryl-CoA 76.2 8.1 0.00018 45.1 8.0 106 1010-1117 8-128 (321)
394 PHA02557 22 prohead core prote 76.2 1.5E+02 0.0032 33.9 18.8 59 277-335 143-201 (271)
395 PRK12814 putative NADPH-depend 76.2 3.1 6.8E-05 53.0 5.1 75 1009-1084 193-289 (652)
396 PLN03139 formate dehydrogenase 76.0 7.5 0.00016 46.6 7.8 88 1009-1104 199-288 (386)
397 PF02737 3HCDH_N: 3-hydroxyacy 75.9 2.5 5.3E-05 45.1 3.4 103 1011-1115 1-121 (180)
398 PRK12472 hypothetical protein; 75.8 52 0.0011 40.3 14.4 100 214-354 221-320 (508)
399 TIGR03319 YmdA_YtgF conserved 75.8 2.2E+02 0.0048 35.7 20.6 26 504-531 270-295 (514)
400 TIGR00634 recN DNA repair prot 75.8 73 0.0016 40.1 16.8 17 227-243 275-291 (563)
401 PRK07890 short chain dehydroge 75.7 4.5 9.7E-05 44.3 5.6 73 1010-1082 6-91 (258)
402 PRK12936 3-ketoacyl-(acyl-carr 75.6 5.8 0.00013 42.9 6.4 73 1010-1082 7-89 (245)
403 TIGR01035 hemA glutamyl-tRNA r 75.6 4.4 9.5E-05 48.9 5.8 72 1009-1086 180-253 (417)
404 PRK08643 acetoin reductase; Va 75.5 4.3 9.3E-05 44.5 5.4 72 1010-1081 3-87 (256)
405 cd01487 E1_ThiF_like E1_ThiF_l 75.5 14 0.00029 39.3 8.9 85 1011-1097 1-112 (174)
406 TIGR03325 BphB_TodD cis-2,3-di 75.5 4.7 0.0001 44.6 5.7 72 1010-1081 6-87 (262)
407 PRK13304 L-aspartate dehydroge 75.5 20 0.00042 40.7 10.7 115 1011-1136 3-129 (265)
408 TIGR00840 b_cpa1 sodium/hydrog 75.5 43 0.00093 42.2 14.5 74 873-946 68-150 (559)
409 PRK07574 formate dehydrogenase 75.4 9.6 0.00021 45.6 8.5 87 1010-1104 193-281 (385)
410 cd01485 E1-1_like Ubiquitin ac 75.4 7.1 0.00015 42.3 6.9 90 1009-1098 19-138 (198)
411 PRK12704 phosphodiesterase; Pr 75.2 1.5E+02 0.0033 37.1 19.0 25 270-294 105-129 (520)
412 TIGR01963 PHB_DH 3-hydroxybuty 75.2 5.2 0.00011 43.5 5.9 71 1011-1081 3-86 (255)
413 PRK05717 oxidoreductase; Valid 75.2 5.7 0.00012 43.7 6.2 72 1010-1081 11-92 (255)
414 PLN02858 fructose-bisphosphate 75.1 14 0.0003 51.2 10.9 110 1009-1127 324-445 (1378)
415 PRK05875 short chain dehydroge 75.1 4.3 9.3E-05 45.1 5.3 73 1010-1082 8-95 (276)
416 PRK10476 multidrug resistance 75.0 26 0.00057 41.0 12.0 50 194-243 128-177 (346)
417 PRK07608 ubiquinone biosynthes 74.9 2.6 5.7E-05 49.3 3.7 65 1008-1072 4-68 (388)
418 TIGR03206 benzo_BadH 2-hydroxy 74.8 4.3 9.4E-05 44.1 5.1 73 1010-1082 4-89 (250)
419 PRK08340 glucose-1-dehydrogena 74.8 4.5 9.9E-05 44.6 5.3 71 1011-1081 2-84 (259)
420 COG0451 WcaG Nucleoside-diphos 74.7 3.9 8.5E-05 45.9 4.9 69 1012-1081 3-72 (314)
421 PRK05479 ketol-acid reductoiso 74.7 8.4 0.00018 45.2 7.6 68 1010-1086 18-86 (330)
422 TIGR01832 kduD 2-deoxy-D-gluco 74.6 5.4 0.00012 43.5 5.8 72 1010-1081 6-88 (248)
423 PRK06500 short chain dehydroge 74.5 4.9 0.00011 43.7 5.4 72 1010-1081 7-88 (249)
424 PRK06079 enoyl-(acyl carrier p 74.5 5.5 0.00012 44.0 5.9 71 1010-1080 8-90 (252)
425 PRK04125 murein hydrolase regu 74.3 40 0.00088 34.9 11.5 102 601-707 8-117 (141)
426 TIGR03022 WbaP_sugtrans Undeca 74.3 79 0.0017 38.5 16.2 71 1009-1084 125-199 (456)
427 PRK12320 hypothetical protein; 74.1 8.9 0.00019 49.3 8.2 67 1011-1082 2-69 (699)
428 PRK06476 pyrroline-5-carboxyla 74.0 17 0.00036 40.7 9.6 97 1011-1118 2-103 (258)
429 cd08230 glucose_DH Glucose deh 74.0 13 0.00028 43.2 9.1 92 1009-1105 173-267 (355)
430 PRK12769 putative oxidoreducta 73.9 2.9 6.2E-05 53.3 3.9 71 1009-1083 327-422 (654)
431 COG0686 Ald Alanine dehydrogen 73.7 13 0.00027 43.2 8.3 101 1007-1109 166-270 (371)
432 PRK08013 oxidoreductase; Provi 73.7 2.9 6.4E-05 49.6 3.7 63 1010-1072 4-67 (400)
433 PRK08277 D-mannonate oxidoredu 73.6 4.7 0.0001 45.0 5.1 73 1010-1082 11-96 (278)
434 TIGR00036 dapB dihydrodipicoli 73.6 12 0.00026 42.5 8.4 126 1011-1147 3-145 (266)
435 PRK15204 undecaprenyl-phosphat 73.5 1.2E+02 0.0025 37.6 17.4 45 1009-1056 146-194 (476)
436 PRK08251 short chain dehydroge 73.5 5.8 0.00012 43.2 5.7 72 1010-1081 3-89 (248)
437 COG1579 Zn-ribbon protein, pos 73.5 1.7E+02 0.0036 33.2 20.8 68 268-335 89-156 (239)
438 TIGR03570 NeuD_NnaD sugar O-ac 73.4 12 0.00025 39.4 7.8 81 1011-1097 1-82 (201)
439 PLN02986 cinnamyl-alcohol dehy 73.4 5.4 0.00012 45.6 5.7 71 1010-1081 6-85 (322)
440 PRK12810 gltD glutamate syntha 73.4 3.7 8E-05 50.2 4.5 76 1008-1084 142-239 (471)
441 TIGR02622 CDP_4_6_dhtase CDP-g 73.2 6 0.00013 45.9 6.1 73 1010-1082 5-84 (349)
442 PRK13581 D-3-phosphoglycerate 73.2 18 0.00038 45.2 10.4 69 1009-1087 140-208 (526)
443 PRK12815 carB carbamoyl phosph 73.1 6.2 0.00014 53.2 6.9 114 1009-1123 7-143 (1068)
444 PRK12779 putative bifunctional 73.1 4.9 0.00011 53.4 5.8 76 1008-1083 305-402 (944)
445 PLN00203 glutamyl-tRNA reducta 73.0 4.2 9.2E-05 50.4 4.9 74 1009-1086 266-342 (519)
446 COG0300 DltE Short-chain dehyd 72.9 5.6 0.00012 45.2 5.4 62 1009-1070 6-75 (265)
447 PRK15469 ghrA bifunctional gly 72.9 7.8 0.00017 45.0 6.8 84 1010-1103 137-222 (312)
448 PLN02253 xanthoxin dehydrogena 72.9 5.9 0.00013 44.2 5.7 72 1010-1081 19-102 (280)
449 PRK07666 fabG 3-ketoacyl-(acyl 72.8 5.3 0.00012 43.3 5.2 72 1010-1081 8-92 (239)
450 PRK07531 bifunctional 3-hydrox 72.8 10 0.00022 46.9 8.1 74 1011-1085 6-92 (495)
451 PRK02006 murD UDP-N-acetylmura 72.8 8.1 0.00017 47.6 7.3 67 1010-1082 8-78 (498)
452 PRK10124 putative UDP-glucose 72.8 1.2E+02 0.0025 37.4 17.2 91 1009-1108 143-240 (463)
453 COG3524 KpsE Capsule polysacch 72.8 79 0.0017 36.6 14.1 64 167-245 142-206 (372)
454 PRK12367 short chain dehydroge 72.8 9.5 0.0002 42.4 7.2 72 1010-1082 15-88 (245)
455 KOG1251 Serine racemase [Signa 72.8 35 0.00076 38.4 11.2 123 1007-1131 71-233 (323)
456 cd00755 YgdL_like Family of ac 72.7 12 0.00027 41.6 8.0 89 1009-1098 11-127 (231)
457 smart00859 Semialdhyde_dh Semi 72.7 7 0.00015 38.5 5.5 85 1012-1100 2-92 (122)
458 PRK07856 short chain dehydroge 72.6 5.5 0.00012 43.7 5.3 70 1010-1081 7-83 (252)
459 PRK12480 D-lactate dehydrogena 72.5 15 0.00033 43.1 9.1 81 1011-1103 148-230 (330)
460 COG0654 UbiH 2-polyprenyl-6-me 72.4 3.6 7.7E-05 48.8 4.0 58 1010-1071 3-60 (387)
461 PRK00421 murC UDP-N-acetylmura 72.2 9.2 0.0002 46.6 7.5 72 1010-1088 8-81 (461)
462 PLN02602 lactate dehydrogenase 72.1 15 0.00032 43.5 8.9 93 1010-1108 38-155 (350)
463 PRK07576 short chain dehydroge 72.1 6.6 0.00014 43.7 5.8 71 1010-1080 10-93 (264)
464 TIGR00640 acid_CoA_mut_C methy 72.1 22 0.00048 36.2 9.0 88 1049-1136 27-121 (132)
465 PRK12384 sorbitol-6-phosphate 71.8 5.7 0.00012 43.6 5.2 73 1010-1082 3-90 (259)
466 PRK07478 short chain dehydroge 71.7 6.2 0.00013 43.3 5.4 73 1010-1082 7-92 (254)
467 PRK07533 enoyl-(acyl carrier p 71.7 9.5 0.00021 42.3 6.9 71 1010-1080 11-95 (258)
468 PRK06463 fabG 3-ketoacyl-(acyl 71.6 7.4 0.00016 42.8 6.0 72 1010-1081 8-87 (255)
469 PLN02735 carbamoyl-phosphate s 71.6 14 0.00031 50.0 9.7 114 1009-1123 23-159 (1102)
470 PRK07634 pyrroline-5-carboxyla 71.6 22 0.00047 39.2 9.7 99 1010-1118 5-109 (245)
471 PRK07178 pyruvate carboxylase 71.6 5 0.00011 49.2 5.1 114 1010-1123 3-129 (472)
472 PRK07097 gluconate 5-dehydroge 71.5 6.2 0.00013 43.7 5.4 73 1010-1082 11-96 (265)
473 PRK09135 pteridine reductase; 71.3 7.1 0.00015 42.2 5.7 73 1010-1082 7-94 (249)
474 KOG0971 Microtubule-associated 71.3 3.1E+02 0.0066 36.3 19.9 76 272-349 393-482 (1243)
475 TIGR03366 HpnZ_proposed putati 71.3 22 0.00048 39.9 9.9 94 1009-1106 121-217 (280)
476 PRK09288 purT phosphoribosylgl 71.3 7.2 0.00016 46.2 6.2 73 1009-1083 12-85 (395)
477 PRK14619 NAD(P)H-dependent gly 71.2 24 0.00051 40.7 10.2 33 1011-1043 6-38 (308)
478 PRK06139 short chain dehydroge 71.1 6.5 0.00014 45.8 5.7 73 1010-1082 8-93 (330)
479 PLN02858 fructose-bisphosphate 71.1 19 0.00041 50.0 10.7 109 1010-1127 5-125 (1378)
480 PRK07775 short chain dehydroge 71.1 6.7 0.00015 43.9 5.6 74 1009-1082 10-96 (274)
481 PF08826 DMPK_coil: DMPK coile 71.0 30 0.00065 30.9 8.3 51 266-316 9-59 (61)
482 PRK09414 glutamate dehydrogena 71.0 13 0.00027 45.5 8.2 110 1009-1123 232-363 (445)
483 TIGR01369 CPSaseII_lrg carbamo 71.0 6.1 0.00013 53.2 6.0 75 1009-1084 554-640 (1050)
484 PRK10263 DNA translocase FtsK; 70.9 1.4E+02 0.0031 41.1 18.0 12 845-856 143-154 (1355)
485 PRK02472 murD UDP-N-acetylmura 70.8 10 0.00023 45.6 7.6 70 1010-1084 6-79 (447)
486 PLN02948 phosphoribosylaminoim 70.8 6.9 0.00015 49.3 6.2 66 1009-1077 22-87 (577)
487 PTZ00117 malate dehydrogenase; 70.8 22 0.00049 41.4 10.0 94 1009-1108 5-123 (319)
488 PRK04308 murD UDP-N-acetylmura 70.8 11 0.00024 45.6 7.7 73 1010-1088 6-82 (445)
489 cd00300 LDH_like L-lactate deh 70.7 17 0.00038 41.9 8.9 92 1012-1109 1-117 (300)
490 PRK07109 short chain dehydroge 70.7 5.9 0.00013 46.1 5.2 72 1010-1081 9-93 (334)
491 TIGR01327 PGDH D-3-phosphoglyc 70.7 22 0.00048 44.3 10.5 86 1010-1104 139-226 (525)
492 TIGR00808 malonate_madM malona 70.7 60 0.0013 35.6 12.0 98 613-712 25-135 (254)
493 PF00261 Tropomyosin: Tropomyo 70.5 1.8E+02 0.004 32.4 20.6 149 149-322 9-167 (237)
494 cd02071 MM_CoA_mut_B12_BD meth 70.2 27 0.00058 34.8 9.0 85 1049-1133 24-115 (122)
495 PRK07041 short chain dehydroge 70.2 12 0.00026 40.2 7.2 67 1016-1082 5-78 (230)
496 TIGR00606 rad50 rad50. This fa 70.2 3.2E+02 0.0069 38.2 22.2 25 149-173 710-734 (1311)
497 PRK02224 chromosome segregatio 70.2 3.6E+02 0.0079 35.7 23.3 187 149-358 385-592 (880)
498 TIGR01082 murC UDP-N-acetylmur 70.1 9.8 0.00021 46.1 7.1 70 1011-1087 1-72 (448)
499 PF05982 DUF897: Domain of unk 70.1 2.3E+02 0.005 33.4 23.1 129 629-764 2-137 (327)
500 PTZ00082 L-lactate dehydrogena 70.0 7.7 0.00017 45.3 5.9 98 1009-1108 6-129 (321)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=3.8e-72 Score=685.56 Aligned_cols=528 Identities=38% Similarity=0.609 Sum_probs=472.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhc
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~ 680 (1158)
+.++++++++.++.+++++++|+ ++|+++|||++|+++||+++|++++...+..++++|++++||.+|+|+|++.+++.
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl-~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~ 83 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRL-GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKL 83 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 46788999999999999999999 99999999999999999999999888889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHH
Q 001096 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVV 760 (1158)
Q Consensus 681 ~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIv 760 (1158)
++.++.++..+++++++++ +.+.+++|++|..++++|.+++.|||++++++|+|++.++++.|+.++++++++|+++|+
T Consensus 84 ~~~~~~~g~~qv~~~~~~~-~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ 162 (621)
T PRK03562 84 RRSIFGGGALQMVACGGLL-GLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIP 162 (621)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999987644 445567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 001096 761 LLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA 840 (1158)
Q Consensus 761 ll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae 840 (1158)
++++++.+..... +.... .++...+..++.+++++++++|+.+|+++|+.+.+.+|.++..+++++++++++++
T Consensus 163 ll~l~~~l~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~ 236 (621)
T PRK03562 163 LVAMIPLLAASGA--STTLG----AFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLME 236 (621)
T ss_pred HHHHHHHHccCCC--ccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 9988776653211 11111 12222334445555666778899999999998888889888888889999999999
Q ss_pred HhCchHHHHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001096 841 RAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVG 920 (1158)
Q Consensus 841 ~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~ 920 (1158)
.+|+|+++|||++|+++++.++++++++++++|+++|+|+||+++||++|+..+...++.++.++++.+++|++++++.+
T Consensus 237 ~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~ 316 (621)
T PRK03562 237 EVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLA 316 (621)
T ss_pred HhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877666666666678899999999999
Q ss_pred HhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhHHh-hhhhhcccccC
Q 001096 921 RLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIAS-RFEQHDVRSLL 999 (1158)
Q Consensus 921 ~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~~~~la~-r~~~~~~r~l~ 999 (1158)
+++|+++++++.+|+.|+++|+++++++..+.+.|+++++.++++++++++|++++|++..+++++.. ++... .
T Consensus 317 ~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~~~~~~--~--- 391 (621)
T PRK03562 317 RPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQSRTEEA--R--- 391 (621)
T ss_pred HHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhc--c---
Confidence 99999999999999999999999999999999999999999999999999999999999887654433 33211 1
Q ss_pred ccCcccccccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1000 PVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1000 ~~e~~~~~l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
. +...++.++|++|||+|++|+.+++.|.++|++|++||.|+++++.+++.|+++++||++++++|+++|+++|+.+|+
T Consensus 392 ~-~~~~~~~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 392 E-ADEIDEQQPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred c-ccccccccCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 1 112234479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchhhHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHh
Q 001096 1080 TLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1158)
Q Consensus 1080 ~t~dd~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~ 1142 (1158)
+++||+.|..++..+|+++|+.+|++|++|+++.+.|+++|||+|+++...++..++++++..
T Consensus 471 ~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~L~~ 533 (621)
T PRK03562 471 AIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLVLES 533 (621)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999854
No 2
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=7.5e-72 Score=681.52 Aligned_cols=532 Identities=37% Similarity=0.597 Sum_probs=472.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhH
Q 001096 597 NEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1158)
Q Consensus 597 ~~~~~~Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~ 676 (1158)
|++.+.+.++++++.++.+++++++|+ ++|+++|||++|+++||+++|++++...+..++++|++++||.+|+|+|++.
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~~~l~~rl-~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~ 79 (601)
T PRK03659 1 MEGSDLLTAGVLFLFAAVVAVPLAQRL-GIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSK 79 (601)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 456778889999999999999999999 9999999999999999999999988788899999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhh
Q 001096 677 LSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDL 756 (1158)
Q Consensus 677 Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi 756 (1158)
+++.++.++.++..++++|+++++.+. +++|++|..++++|++++.|||++++++|+|++..+++.|++++++++++|+
T Consensus 80 l~~~~~~~~~~g~~~v~~t~~~~~~~~-~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di 158 (601)
T PRK03659 80 LWQLRRSIFGVGAAQVLLSAAVLAGLL-MLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDL 158 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHH
Confidence 999999999999999999986655544 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 001096 757 AVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTS 836 (1158)
Q Consensus 757 ~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a 836 (1158)
.+|+++++++.+..... + . ..+. .+ ...++.+++++++++++.+|+++|+.+.+..+.++..+++++++++
T Consensus 159 ~~i~ll~l~~~l~~~~~-~--~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a 229 (601)
T PRK03659 159 AVIPALALVPLLAGSAD-E--H-FDWM-KI----GMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSA 229 (601)
T ss_pred HHHHHHHHHHHHhcCCC-c--c-hHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 99999888776653211 1 1 1111 11 1122333445566888999999999888888998888888899999
Q ss_pred HHHHHhCchHHHHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001096 837 LLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILV 916 (1158)
Q Consensus 837 ~lae~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v 916 (1158)
++++.+|+|+++|||++|+++++.++++++++++++++++|+|+||+++||.+|+..+...|+.++.++++.+++|++++
T Consensus 230 ~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~ 309 (601)
T PRK03659 230 LFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVL 309 (601)
T ss_pred HHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877766666777889999999
Q ss_pred HHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhH-Hhhhhhhcc
Q 001096 917 ALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLI-ASRFEQHDV 995 (1158)
Q Consensus 917 ~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~~~~l-a~r~~~~~~ 995 (1158)
++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.++.+++++++|++++|++.+.++++ .+++...+.
T Consensus 310 ~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~~~~~~~ 389 (601)
T PRK03659 310 YLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARRLNGPEE 389 (601)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876554 333322111
Q ss_pred cccCccCcccccccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccC
Q 001096 996 RSLLPVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERAC 1075 (1158)
Q Consensus 996 r~l~~~e~~~~~l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~ 1075 (1158)
. ......++.++|+||||+|++|+.+++.|+++|++|++||.|+++++.+++.|+++++||++++++|+++|+++|+
T Consensus 390 ~---~~~~~~~~~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 390 E---DEKPWVEDDKPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred c---ccccccccccCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCC
Confidence 0 0011223457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCchhhHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHh
Q 001096 1076 AAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1158)
Q Consensus 1076 ~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~ 1142 (1158)
++|++++||+.|..++..+|+++|+.+|++|++|+++.+.|+++|||+|++++.+++..|+++++..
T Consensus 467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~L~~ 533 (601)
T PRK03659 467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVS 533 (601)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998854
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.6e-69 Score=657.60 Aligned_cols=549 Identities=27% Similarity=0.395 Sum_probs=463.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHH
Q 001096 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1158)
Q Consensus 598 ~~~~~Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~L 677 (1158)
+.+..+..+.++++++.+++.+++|+ ++|+++|||++|+++||+++|++++...++.++++|++++||.+|+|+|++.+
T Consensus 3 ~~~~~~~~~~~~l~~a~~~~~l~~rl-~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l 81 (558)
T PRK10669 3 HATPLITTIVGGLVLAFILGMLANRL-RISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDL 81 (558)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 33444566688888999999999999 99999999999999999999998877889999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhH
Q 001096 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1158)
Q Consensus 678 rr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~ 757 (1158)
++.++..+..++.++++++ ++++++++.+|+++..++++|++++.||+++++++++|+|.++++.||+++++++++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~ 160 (558)
T PRK10669 82 MAVKSIAIPGAIAQIAVAT-LLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV 160 (558)
T ss_pred HHHhhHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHH
Confidence 9998877777777777765 466667778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001096 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1158)
Q Consensus 758 aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~ 837 (1158)
+|++++++..+......++.........+...+...++.+++.+++++++.++++++..+...++.+++.++++++++++
T Consensus 161 ~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~ 240 (558)
T PRK10669 161 MVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAF 240 (558)
T ss_pred HHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 99998877655432111111111111122222222333333344455566666666666556677777777777777775
Q ss_pred H-HHHhCchHHHHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001096 838 L-TARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILV 916 (1158)
Q Consensus 838 l-ae~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v 916 (1158)
. ++.+|+|+++|||++|+++++.++++++.+...++.++|.|+||+++|+++|+..+...+..++.++++.+++|++++
T Consensus 241 ~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~ 320 (558)
T PRK10669 241 GAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAA 320 (558)
T ss_pred HHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 689999999999999999999988888888888899999999999999999999887765555566677789999999
Q ss_pred HHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhHHhhhhhhccc
Q 001096 917 ALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFEQHDVR 996 (1158)
Q Consensus 917 ~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~~~~la~r~~~~~~r 996 (1158)
++.++++|+++++++.+|+.|+++|+++++++..+.+.|+++++.|+++++++++|++++|++.++..+...+......+
T Consensus 321 ~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~~~~~~~~~~ 400 (558)
T PRK10669 321 FFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYLAKTETLEEQ 400 (558)
T ss_pred HHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988765554443221111
Q ss_pred ---c-cCccCcccccccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCcc
Q 001096 997 ---S-LLPVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAE 1072 (1158)
Q Consensus 997 ---~-l~~~e~~~~~l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~ 1072 (1158)
+ ..+.+..+.++++|++|||+|++|+.+++.|+++|++|++||.|+++++.+++.|+++++||++|+++|+++|++
T Consensus 401 ~~~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 401 TLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred ccccccccccccccccCCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCcc
Confidence 0 001112234668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCEEEEecCCchhhHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhhhhhhh
Q 001096 1073 RACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQVIHDYQ 1148 (1158)
Q Consensus 1073 ~A~~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~~i~~~~ 1148 (1158)
+|+.++++++||..|..++.++|+.+|+.+|++|++|+++.++++++|+|+|++|+.+.++.+++.+.+|...+..
T Consensus 481 ~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~~~~~~~~ 556 (558)
T PRK10669 481 CARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVV 556 (558)
T ss_pred ccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999877654
No 4
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.6e-47 Score=478.52 Aligned_cols=416 Identities=18% Similarity=0.315 Sum_probs=334.5
Q ss_pred ccccccchhHH--------HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC----------chhHH
Q 001096 593 EQEINEEEASL--------FDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH----------VHGTK 654 (1158)
Q Consensus 593 s~gi~~~~~~L--------l~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~----------~~~l~ 654 (1158)
|.|+|.+++++ ++++++++++.+++++++|+ |+|.++|||++|+++||+++|+++. ...++
T Consensus 27 s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl-~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~ 105 (832)
T PLN03159 27 TNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPF-RQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLE 105 (832)
T ss_pred CCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHH
Confidence 78899877664 68889999999999999999 9999999999999999999998742 23589
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC------hHHHHHHhhccccCcHHH
Q 001096 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP------GPASIVIGNGLALSSTAV 728 (1158)
Q Consensus 655 ~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~llGls------~~~AlllGaiLs~TS~aV 728 (1158)
+++++|++++||.+|+|+|++.+|+.+|+++.+++.+++++++ +|+++.+++++. +..++++|++++.||+++
T Consensus 106 ~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~-lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pV 184 (832)
T PLN03159 106 TMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFC-IGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPV 184 (832)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999875 444333333321 335688999999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 729 VLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLL 808 (1158)
Q Consensus 729 Vv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~ll 808 (1158)
++++|+|+|+++++.|++++++++++|+++|++++++..+.... ..... .+ +.+++.++++++..++.
T Consensus 185 v~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~---~~~~~----~l-----~~~l~~~~f~~~~~~v~ 252 (832)
T PLN03159 185 LARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEND---STSLA----SL-----WVLLSSVAFVLFCFYVV 252 (832)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Ccchh----HH-----HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998775554221 11111 11 11222333344445667
Q ss_pred HHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccchhHHHHHhHHhH-HHHHHHHHH
Q 001096 809 RPIYKQIAENQ-----NAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPY-RGLLLGLFF 882 (1158)
Q Consensus 809 r~ll~~i~~~~-----~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~-~~~flPlFF 882 (1158)
||++.|+.++. ..+.++.++++++++++++++.+|+|+++|||++|+++|+.++++.+.++++++ .++|+|+||
T Consensus 253 r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFF 332 (832)
T PLN03159 253 RPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFF 332 (832)
T ss_pred HHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 78888876542 245666677788888999999999999999999999999988889999999998 899999999
Q ss_pred HHHhcccChhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhh
Q 001096 883 MTVGMSIDPKLLLSN--FPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQ 960 (1158)
Q Consensus 883 vliGm~idl~~L~~~--~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~e 960 (1158)
+++||++|+..+... |..+++++++.+++|++++++.++++|+|+++++.+|++|++||+++++++..+.+.|+++++
T Consensus 333 v~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~ 412 (832)
T PLN03159 333 AISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDE 412 (832)
T ss_pred HHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCch
Confidence 999999999887653 333445566778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH-HHHHHhHHHHHhhhhhHHhhhhhhcccccCccCcccccccccccccCCcccHHHH
Q 001096 961 LSSLLFLLV-GISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIILCGFGRVGQII 1024 (1158)
Q Consensus 961 lfsiLvlvV-VlS~IitPlL~~~~~~la~r~~~~~~r~l~~~e~~~~~l~~hvVIiG~G~vG~~I 1024 (1158)
.|+++++++ ++|++++|++.++|+ +++|+..++.|.+... +++.+++--+++.+.+.+...+
T Consensus 413 ~f~~lVl~avl~T~i~~Plv~~ly~-p~rk~~~~~~r~i~~~-~~~~elriL~cv~~~~~v~~li 475 (832)
T PLN03159 413 SFAVMVLVAVAMTALITPVVTVVYR-PARRLVGYKRRTIQRS-KHDAELRMLVCVHTPRNVPTII 475 (832)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC-HHhhhccccccccccC-CCCCceeEEEEeccCCcHHHHH
Confidence 999988765 569999999988776 6777766555544322 2344555455555555554443
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-42 Score=400.84 Aligned_cols=373 Identities=38% Similarity=0.635 Sum_probs=312.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccc-cCchhHHHHHHHHHHHHHHHHHhcCChhH
Q 001096 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSII-RHVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1158)
Q Consensus 598 ~~~~~Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli-~~~~~l~~LaeLGLi~LLF~aGLelDl~~ 676 (1158)
+...++.++.++++++.+++++++|+ ++|+++||+++|+++||.+++.+ ++.+.++.++++|++++||.+|+|+|+++
T Consensus 3 ~~~~~l~~~~iiL~~a~i~~~l~~rl-~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~ 81 (397)
T COG0475 3 MLSLILLQLLILLLVAVILGPLFKRL-GLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER 81 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH
Confidence 34567889999999999999999999 99999999999999999666554 46678899999999999999999999999
Q ss_pred HHhchhh-HHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhh
Q 001096 677 LSSMKKY-VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQ 754 (1158)
Q Consensus 677 Lrr~~k~-il~Lai~gvllt~iivglll~~-llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~slln 754 (1158)
+|+++++ .+..+..++..++ +++....+ .+|++|..++++|.+++.||+++++++++|+|..+++.|++++++++++
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~ 160 (397)
T COG0475 82 LKKVGRSVGLGVAQVGLTAPF-LLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFD 160 (397)
T ss_pred HHHhchhhhhhHHHHHHHHHH-HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999 5555555555553 23432222 5899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 001096 755 DLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILG 834 (1158)
Q Consensus 755 Di~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~ 834 (1158)
|++++++++++..+...... .... +....+...+..++.+.+++++.+|+++++.+.+.+|.++..+++++++
T Consensus 161 Di~~i~lLai~~~l~~~g~~---~~~~----~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~ 233 (397)
T COG0475 161 DIAAILLLAIVPALAGGGSG---SVGF----ILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLG 233 (397)
T ss_pred HHHHHHHHHHHHHHccCCCc---cHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999988877643211 1111 1122233344444445557899999999999888889999999999999
Q ss_pred HHHHHHHhCchHHHHHHHHHHhhcccchh-HHHHHhHHhHHH-HHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHH
Q 001096 835 TSLLTARAGLSMALGAFLAGLLLAETEFS-LQVESDIAPYRG-LLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGK 912 (1158)
Q Consensus 835 ~a~lae~lGls~vLGAFvAGLiL~n~~~~-~~l~e~l~~~~~-~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K 912 (1158)
++++++.+|+|+++|||+||+++++.+++ ++++++++++.+ +|+|+||+.+||++|+..+..++..+++++.+.+++|
T Consensus 234 ~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K 313 (397)
T COG0475 234 AAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGK 313 (397)
T ss_pred HHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 799999999977 9999999999999999999998777777888889999
Q ss_pred HHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHH
Q 001096 913 TILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLA 980 (1158)
Q Consensus 913 ~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~ 980 (1158)
.+++++.++..|+++++++..|+.+.++|+++++.++.+.. +.++++.+..++.+.++++.+.|.+.
T Consensus 314 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~ 380 (397)
T COG0475 314 ILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLT 380 (397)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776 45666666665555555444444333
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-39 Score=349.42 Aligned_cols=393 Identities=29% Similarity=0.471 Sum_probs=344.8
Q ss_pred ccchhHHHH-HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChh
Q 001096 597 NEEEASLFD-VLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVE 675 (1158)
Q Consensus 597 ~~~~~~Ll~-i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~ 675 (1158)
|+++.|++. +..-+.+++++|.+..|+ |+||.+||+++|+++||...|+..+......++++|++++||-+|++++++
T Consensus 1 m~h~tpli~tiv~gl~lAFl~G~lA~rl-rlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslk 79 (408)
T COG4651 1 MHHDTPLITTIVGGLVLAFLLGALANRL-RLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLK 79 (408)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHH
Confidence 345555554 455566799999999999 999999999999999999999998888888999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhh
Q 001096 676 RLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQD 755 (1158)
Q Consensus 676 ~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnD 755 (1158)
++...+..++.-++.+..+.. ..++.+.+++||++...+++|.++|..||.+.++.++|++..++..||++++..+++|
T Consensus 80 dLLavk~iAipgAl~qia~at-~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveD 158 (408)
T COG4651 80 DLLAVKAIAIPGALAQIALAT-LLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVED 158 (408)
T ss_pred HHhhHHHHhcchHHHHHHHHH-HHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHH
Confidence 998777666666666655543 4677778899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 001096 756 LAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGT 835 (1158)
Q Consensus 756 i~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~ 835 (1158)
++.++.+++.+.+++-...++.++......++....+....+.+.+++++.+.++++.++....++|.|.+.+++++++.
T Consensus 159 l~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgV 238 (408)
T COG4651 159 LAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGV 238 (408)
T ss_pred HHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999998888776544344444445556677777788888888888999998888888888889999999999999998
Q ss_pred HHH-HHHhCchHHHHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHH
Q 001096 836 SLL-TARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTI 914 (1158)
Q Consensus 836 a~l-ae~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l 914 (1158)
++- ++.+|+|..+|||++|+++++++.+++..+..-|+++.|..+||+.+||..||..+.+....++..+.+.+.+|-+
T Consensus 239 a~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~ 318 (408)
T COG4651 239 AFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSV 318 (408)
T ss_pred hhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHH
Confidence 765 5899999999999999999999999999999999999999999999999999999988766677777888899999
Q ss_pred HHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhhhHHhhhh
Q 001096 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFE 991 (1158)
Q Consensus 915 ~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~~~~la~r~~ 991 (1158)
..+...+.+|.|.++++.++..+++.|+|+++++..+...+++++..-.+++...+.+.++.|++..+.++..++.+
T Consensus 319 aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~~~e 395 (408)
T COG4651 319 AAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQRSAE 395 (408)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999888888888889999999999988776555544
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=3e-38 Score=384.34 Aligned_cols=372 Identities=22% Similarity=0.230 Sum_probs=302.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHHhcCChhHHH
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~--~~~~l~~LaeLGLi~LLF~aGLelDl~~Lr 678 (1158)
..++.++++++++.+++.+++|+ ++|.+++|+++|+++||+++|.++ +....+.++++|+++++|.+|+++|++.+|
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~ 84 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFR 84 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHH
Confidence 45678889999999999999999 999999999999999999999663 445679999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCC-CCchhhHHHHHHHhhhhhH
Q 001096 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLA 757 (1158)
Q Consensus 679 r~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~l-l~s~~GrlaLs~sllnDi~ 757 (1158)
+.+++++.+++.+++++++++++.+++++|++|..++++|+++++||++++.+++++.++ ++++.++++++++.+||.+
T Consensus 85 ~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ 164 (562)
T PRK05326 85 PALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPM 164 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHH
Confidence 999999999999999999888889999999999999999999999999999999999994 6899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001096 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1158)
Q Consensus 758 aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~ 837 (1158)
+++++.++..+..... ++..+. .+..++...+++++++++++ ++..+++++.. ....+.+.++++++++++++
T Consensus 165 ai~l~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~g~~~G~~~g-~l~~~l~~~~~-~~~~~~~~i~~l~~~l~~~~ 237 (562)
T PRK05326 165 AVFLTITLIELITGGE-TGLSWG----FLLLFLQQFGLGALIGLLGG-WLLVQLLNRIA-LPAEGLYPILVLAGALLIFA 237 (562)
T ss_pred HHHHHHHHHHHHhCCC-CcchHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc-CchhhHHHHHHHHHHHHHHH
Confidence 9888765543332211 111111 12223333444455455444 34455555552 22345666777888999999
Q ss_pred HHHHhCchHHHHHHHHHHhhcccc--hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhh-HHHHHHHHHHHHHH
Q 001096 838 LTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPV-ITGALGLLIGGKTI 914 (1158)
Q Consensus 838 lae~lGls~vLGAFvAGLiL~n~~--~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~-vllllvl~ll~K~l 914 (1158)
+++.+|+|+++|+|++|++++|.+ ..+.+.+..+.+..++.|+||+++|+.+|+..+.+.++. +++.+++.+++|++
T Consensus 238 ~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l 317 (562)
T PRK05326 238 LTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPL 317 (562)
T ss_pred HHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 334455556667789999999999999999988764333 33344566789999
Q ss_pred HHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccch-hhhHHHHHHHHHHHHHhHHHHHh
Q 001096 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMS-SQLSSLLFLLVGISMALTPWLAA 981 (1158)
Q Consensus 915 ~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs-~elfsiLvlvVVlS~IitPlL~~ 981 (1158)
++++..+.+++++++++.+|+. .+||.++++++..+...|..+ +.++.++++++++|+++.++...
T Consensus 318 ~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~ 384 (562)
T PRK05326 318 AVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLP 384 (562)
T ss_pred HHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHH
Confidence 9999999999999999999985 799999999999999888875 56778888888888888766554
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1e-37 Score=361.49 Aligned_cols=363 Identities=30% Similarity=0.467 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc-hhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHH
Q 001096 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV-HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (1158)
Q Consensus 608 lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~-~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~ 686 (1158)
++++.+.+.+.+++|+ ++|++++|+++|+++||.+++++++. ...+.++++|+.+++|.+|+|+|++.+|+.+++.+.
T Consensus 3 lli~~~~~~~~l~~r~-~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 3 LLILLAFVAGILFRRL-GIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred EEeehHHHHHHHHHHh-CCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 3444566667789999 99999999999999999999987776 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHH
Q 001096 687 LGSAQVLVTAVVVGLVAHF---VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLI 763 (1158)
Q Consensus 687 Lai~gvllt~iivglll~~---llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ 763 (1158)
+++.+++++++++++.+++ ..|+++..++++|.+++.|||++++++++|.+..+++.++++++++++||+++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~ 161 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLS 161 (380)
T ss_dssp --------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhh
Confidence 9999999998766777774 5899999999999999999999999999998899999999999999999999998886
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHH
Q 001096 764 LIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAEN--QNAEIFSANTLLVILGTSLLTAR 841 (1158)
Q Consensus 764 ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~--~~~el~~l~iL~v~l~~a~lae~ 841 (1158)
++....... ..... ...+.......++++ +..++.+++.+++.++ +..+.....++++++.++++++.
T Consensus 162 ~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 231 (380)
T PF00999_consen 162 ILISLAQAS--GQSSL---GQLLLSFLWIILIGI-----VIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEI 231 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhccc--ccccc---cchhcchhhhhhhhe-----eeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccc
Confidence 654443111 11111 111111111111222 2223334444554444 45666667778889999999999
Q ss_pred hCchHHHHHHHHHHhhcccchhHHHHHhHHhHH-HHHHHHHHHHHhcccChhhhh---hhhhhHHHHHHHHHHHHHHHHH
Q 001096 842 AGLSMALGAFLAGLLLAETEFSLQVESDIAPYR-GLLLGLFFMTVGMSIDPKLLL---SNFPVITGALGLLIGGKTILVA 917 (1158)
Q Consensus 842 lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~~-~~flPlFFvliGm~idl~~L~---~~~~~vllllvl~ll~K~l~v~ 917 (1158)
+|+|+++|+|++|+++++.+.++++.+++++++ +++.|+||+++|+++|++.+. ..+...+.+++..+++|+++++
T Consensus 232 ~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~ 311 (380)
T PF00999_consen 232 LGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVY 311 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceee
Confidence 999999999999999998888888999999997 999999999999999998884 3455555666677789999999
Q ss_pred HHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHh
Q 001096 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1158)
Q Consensus 918 l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~ 981 (1158)
+..++.|+++++++.+|+.+.+||+++++++..+.+.|.++++.++++++++++|+++.|+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~ 375 (380)
T PF00999_consen 312 LASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILS 375 (380)
T ss_dssp -----------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred hhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888764
No 9
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=357.02 Aligned_cols=413 Identities=20% Similarity=0.296 Sum_probs=329.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC----------chhHHHHHHHHHHHHHHHHHhcC
Q 001096 603 LFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH----------VHGTKAIAEFGVVFLLFNIGLEL 672 (1158)
Q Consensus 603 Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~----------~~~l~~LaeLGLi~LLF~aGLel 672 (1158)
++++.++++++.++..+++++ |+|.++.++++||++||+.+|.+.. ...++.++.+|+.+++|..|+++
T Consensus 25 ~lq~~~i~~~~~~~~~~l~pl-~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~ 103 (769)
T KOG1650|consen 25 LLQIILIIVLSRLLHILLKPL-GQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEI 103 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 488899999999999999999 9999999999999999999998732 24578999999999999999999
Q ss_pred ChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHh------CCC-----hHHHHHHhhccccCcHHHHHHHHHhcCCCCc
Q 001096 673 SVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS------GLP-----GPASIVIGNGLALSSTAVVLQVLQERGESTS 741 (1158)
Q Consensus 673 Dl~~Lrr~~k~il~Lai~gvllt~iivglll~~ll------Gls-----~~~AlllGaiLs~TS~aVVv~iL~el~ll~s 741 (1158)
|.+.+++.+|+...+++.++++|+. .|..+.+.+ ... +..-..++.+.+.|+++++.++|.|++++++
T Consensus 104 d~~~i~~~~kka~~I~~~~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~s 182 (769)
T KOG1650|consen 104 DLRVIRRTGKKAIVIAIASVVLPFG-LGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNS 182 (769)
T ss_pred hHHHhhccCceeEEEEEEEeehhhH-hhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhc
Confidence 9999999999999999999998864 333332222 111 1145777888999999999999999999999
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 001096 742 RHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ-- 819 (1158)
Q Consensus 742 ~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~-- 819 (1158)
++||+++++++++|+++|.++.+.......... .... . .+..+..+++.++..++.+|.+.|+.++.
T Consensus 183 e~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~--~~~~----~-----~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe 251 (769)
T KOG1650|consen 183 ELGRLALSAAVVNDVAGWILLALALAFSSELKL--SPLR----S-----VWDLVLVIGFVLFLFFVVRPLMKWIIKRTPE 251 (769)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC--cchH----H-----HHHHHHHHHHHHheeeehhhhHHHHhhcCCC
Confidence 999999999999999999988776665543211 1111 1 12223333444556678899999998762
Q ss_pred ---chhHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHhhccc-chhHHHHHhHHhH-HHHHHHHHHHHHhcccChhh
Q 001096 820 ---NAEIFSANTLLVILGTSLLTARAG-LSMALGAFLAGLLLAET-EFSLQVESDIAPY-RGLLLGLFFMTVGMSIDPKL 893 (1158)
Q Consensus 820 ---~~el~~l~iL~v~l~~a~lae~lG-ls~vLGAFvAGLiL~n~-~~~~~l~e~l~~~-~~~flPlFFvliGm~idl~~ 893 (1158)
..+.+...+++.++.++.+++.++ +|+++|+|+.|+++|++ |++..+.++++.+ .++|+|+||+..|++.|+..
T Consensus 252 ~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~ 331 (769)
T KOG1650|consen 252 GKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISR 331 (769)
T ss_pred CCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHH
Confidence 234466667888888889998888 89999999999999986 6999999999998 79999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHH
Q 001096 894 LLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISM 973 (1158)
Q Consensus 894 L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~ 973 (1158)
+.. |......+....++|++++...+.++++|+++++.+|++|+++|.++++.+..+.+.+.++.+.|+++++.+++++
T Consensus 332 i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t 410 (769)
T KOG1650|consen 332 INK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVST 410 (769)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHH
Confidence 887 6656667777889999999999999999999999999999999999999999999999999999999999888855
Q ss_pred H-hHHHHHhhhhhHHhhhhhhcccccCccCcccccccccccccCCcccHHHHHHHHhhC
Q 001096 974 A-LTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIILCGFGRVGQIIAQLLSER 1031 (1158)
Q Consensus 974 I-itPlL~~~~~~la~r~~~~~~r~l~~~e~~~~~l~~hvVIiG~G~vG~~Ia~~L~e~ 1031 (1158)
. ++|++...|+ +.+++..+..+.+...+ ...+++--.++.+.+.+...+.-.....
T Consensus 411 ~I~~~~l~~~y~-p~~~~~~y~~~~i~~~~-~~~~Lril~cl~~~~~is~~i~~le~~~ 467 (769)
T KOG1650|consen 411 FITPPLLMFLYD-PTRKYHGYKKRGIQHLK-PNSELRILTCLHGPENISGIINLLELSS 467 (769)
T ss_pred hhHHHHHHHhcc-hhhhcCceEeehhhhcC-CCCceEEEEEecCCCcchHHHHHHHHcC
Confidence 5 5566666665 66666654444333222 2445566677777777666555444433
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=8.7e-33 Score=307.53 Aligned_cols=272 Identities=48% Similarity=0.789 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHH
Q 001096 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA 690 (1158)
Q Consensus 611 l~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~ 690 (1158)
+++.+++.+++|+ ++|++++++++|+++||+++|.+++.+..+.++++|+++++|.+|+|+|++.+|+.+++.+.+++.
T Consensus 2 ~~a~~~~~l~~~l-~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~ 80 (273)
T TIGR00932 2 LAAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVL 80 (273)
T ss_pred cHHHHHHHHHHHh-CCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4677889999999 999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 001096 691 QVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISP 770 (1158)
Q Consensus 691 gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ll~~la~ 770 (1158)
++++|++++++.+++++|+++..++++|+++++||+++++++++|++..+++.|+++++++++||+.+++++.++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~ 160 (273)
T TIGR00932 81 QVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLAT 160 (273)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999777888778889999999999999999999999999999999999999999999999999999999877765543
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHH
Q 001096 771 NSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGA 850 (1158)
Q Consensus 771 ~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGA 850 (1158)
.. +.....+ ....+..++++++.+++++++.+++.++..+.+..+.+...++.++++.+++++.+|+|+++|+
T Consensus 161 ~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s~~lga 233 (273)
T TIGR00932 161 SA---STEHVAL----ALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLSMALGA 233 (273)
T ss_pred CC---CcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 21 1111111 1122233333333444555666666666655445677777778888899999999999999999
Q ss_pred HHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccC
Q 001096 851 FLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSID 890 (1158)
Q Consensus 851 FvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~id 890 (1158)
|++|+++++.+.++++.++++++.++|.|+||+++|+++|
T Consensus 234 f~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 234 FLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 9999999998888889999999999999999999999886
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=5.6e-29 Score=303.27 Aligned_cols=347 Identities=17% Similarity=0.087 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHhhcccccccccCch------hHHHHHHHHHHHHHHHHHhcCChhH
Q 001096 604 FDVLWLLLASVIFVPIFQ-KIPGGSPVLGYLAAGILIGPYGLSIIRHVH------GTKAIAEFGVVFLLFNIGLELSVER 676 (1158)
Q Consensus 604 l~i~lLLl~a~ilg~Ll~-Rl~glP~VVG~ILaGILLGP~gLgli~~~~------~l~~LaeLGLi~LLF~aGLelDl~~ 676 (1158)
..++.++++..++..+++ |+ .+|..+.++++|+++||.+++++.+.. ..-.+.++++++++|.+|++++++.
T Consensus 16 ~~lG~~lll~~l~s~~lkeRl-~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~ 94 (810)
T TIGR00844 16 SCVGIFSSIFSLVSLFVKEKL-YIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKY 94 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 444555555444555555 88 899999999999999999998776332 2223889999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHhhccccCcHHHHHHHHH---hcCCCCchhhHHHHHHHh
Q 001096 677 LSSMKKYVFGLGSAQVLVTAVVVGLVAHFV-SGLPGPASIVIGNGLALSSTAVVLQVLQ---ERGESTSRHGRATFSVLL 752 (1158)
Q Consensus 677 Lrr~~k~il~Lai~gvllt~iivglll~~l-lGls~~~AlllGaiLs~TS~aVVv~iL~---el~ll~s~~GrlaLs~sl 752 (1158)
+++.|+.++++++++++++++++++++|++ +|++|..|+++|+++++|+|+.+..+++ ..+ .+.++..++.+++.
T Consensus 95 Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESG 173 (810)
T TIGR00844 95 MLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESG 173 (810)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhh
Confidence 999999999999999999999999988887 7999999999999999999999999987 333 47788899999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHH
Q 001096 753 FQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTLL 830 (1158)
Q Consensus 753 lnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~--~~el~~l~iL~ 830 (1158)
+||.++++++.+...+......++..... +.+..+++.+++++++++++|+ +..++++|..++. ..+.+..+.++
T Consensus 174 lNDGlAfpfv~LaL~ll~~~~~g~~~~~~--w~l~~~L~~i~~GiliG~vvG~-l~~~Ll~~l~rr~~i~~esfla~~La 250 (810)
T TIGR00844 174 CNDGLAFPFVFLSMDLLLYPGRGGEIVKD--WICVTILWECIFGSILGCIIGY-CGRKAIRFAEGKNIIDRESFLAFYLI 250 (810)
T ss_pred cccHHHHHHHHHHHHHHhccCccccchhh--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHH
Confidence 99999887765443222111111111111 1123344556666777776664 4456666665432 44455556677
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHhhcccch-hHHH-HHhHHh-HHHHHHHHHHHHHhcccChhhhhh------hhhhH
Q 001096 831 VILGTSLLTARAGLSMALGAFLAGLLLAETEF-SLQV-ESDIAP-YRGLLLGLFFMTVGMSIDPKLLLS------NFPVI 901 (1158)
Q Consensus 831 v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~-~~~l-~e~l~~-~~~~flPlFFvliGm~idl~~L~~------~~~~v 901 (1158)
++++++.+++.+|.+++|++|+||+++++... .+.. ...+.. +..++..++|+++|+.+.+..+.. .|..+
T Consensus 251 LAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~i 330 (810)
T TIGR00844 251 LALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLI 330 (810)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHH
Confidence 88888889999999999999999999998632 2211 112222 356889999999999998776643 24445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCChhhHHHHhhhccccchhhHHHHHHHHhhcc
Q 001096 902 TGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGI 956 (1158)
Q Consensus 902 llllvl~ll~K~l~v~l~~~~~--g~~~real~lgL~La~rG~valvla~ia~~~gi 956 (1158)
++.++++++.|+.++++...+. ..+|++++++|+ ..|||..+++++.++.+.+.
T Consensus 331 lLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 331 ILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 5666677788988888764443 468999999998 49999999999998887754
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=9.5e-28 Score=289.82 Aligned_cols=330 Identities=18% Similarity=0.156 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHH
Q 001096 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (1158)
Q Consensus 607 ~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~ 686 (1158)
..+++++..+..+++|+ ++|++++++++|+++||..++. ......+.+..+++++++|.+|+++|++.+|++++.++.
T Consensus 4 ~~l~~~~~~~~~l~~r~-~lP~~v~lil~Gi~lg~~~~~~-~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~ 81 (525)
T TIGR00831 4 IELVMLATAVAVTVKFI-RLPYPIALILAGLLLGLAGLLP-EVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIAL 81 (525)
T ss_pred HHHHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44555566667888899 9999999999999999864432 111233566779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHHHH
Q 001096 687 LGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIP 766 (1158)
Q Consensus 687 Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ll~ 766 (1158)
+++++++++++++++++++++|++|..++++|+++++|||+++.+++++.+. +++..+++.+++++||..+++++.+..
T Consensus 82 la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~~-p~rl~~il~gESllND~~alvlf~~~~ 160 (525)
T TIGR00831 82 IAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGESLLNDGAALVVFAIAV 160 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 9999999999999999998999999999999999999999999999999876 788899999999999999999987655
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchH
Q 001096 767 LISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSM 846 (1158)
Q Consensus 767 ~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~ 846 (1158)
.+..+. +..... ..+..++...++++++++++++.. .+++++.. +.+.....+++++++++|++++.+|.|+
T Consensus 161 ~~~~~~--~~~~~~---~~~~~f~~~~~~gi~vG~~~g~~~-~~l~~~~~--~~~~~~~~l~l~~~~~~y~lAe~lg~Sg 232 (525)
T TIGR00831 161 AVALGK--GVFDPL---NAALDFAVVCVGGIAAGLAVGYLA-YRLLRAKI--DDPLVEIALTILAPFAGFLLAERFHFSG 232 (525)
T ss_pred HHHhcC--CCCcHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 443211 111221 122233334455566666655433 33444322 2333344567888999999999999999
Q ss_pred HHHHHHHHHhhcccch----hHHHHH----hHHhHHHHHHHHHHHHHhcccChhhhhhhh------h-h-H-------HH
Q 001096 847 ALGAFLAGLLLAETEF----SLQVES----DIAPYRGLLLGLFFMTVGMSIDPKLLLSNF------P-V-I-------TG 903 (1158)
Q Consensus 847 vLGAFvAGLiL~n~~~----~~~l~e----~l~~~~~~flPlFFvliGm~idl~~L~~~~------~-~-v-------ll 903 (1158)
++++|++|+++++... ..+... ..+.+..++.+++|+++|+.++. .+...+ + . + ++
T Consensus 233 ilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (525)
T TIGR00831 233 VIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG-TIFSAWKEILVAPAAVILALFTNAFV 311 (525)
T ss_pred HHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999998521 122222 23334567899999999999853 222111 0 0 1 11
Q ss_pred HHHHHHHHHHHHHHHHH--Hh-----cCCChhhHHHHhhhccccchhhHHHHH
Q 001096 904 ALGLLIGGKTILVALVG--RL-----FGVSVISAIRTGLLLAPGGEFAFVAFG 949 (1158)
Q Consensus 904 llvl~ll~K~l~v~l~~--~~-----~g~~~real~lgL~La~rG~valvla~ 949 (1158)
+.......|++.++... ++ .+++|++.+.+++. .+||.++++++.
T Consensus 312 i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al 363 (525)
T TIGR00831 312 IYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHH
Confidence 11222345554433321 11 24678999988875 789999998765
No 13
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.6e-27 Score=266.34 Aligned_cols=455 Identities=18% Similarity=0.189 Sum_probs=331.7
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHHhcCChhHH
Q 001096 601 ASLFDVL-WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1158)
Q Consensus 601 ~~Ll~i~-lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~--~~~~l~~LaeLGLi~LLF~aGLelDl~~L 677 (1158)
+.++.++ ++++++.+...+..|+ |.|-.+.++..||+.|--|+|.++ +.+....+.++++++++|..|+.++++.+
T Consensus 6 ~~ill~gsvlvivsif~s~~ssrf-GvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~ 84 (574)
T COG3263 6 NLILLLGSVLVIVSIFSSLISSRF-GVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSF 84 (574)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHH
Confidence 3444444 6777799999999999 999999999999999999999775 44556899999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhH
Q 001096 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1158)
Q Consensus 678 rr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~ 757 (1158)
|...++.+.++++|+++|...+|..++|+++++|..++++|+++..|+.+.|..+|.++++ +.+.+.++.-+|--||-+
T Consensus 85 r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl-~erv~stLEiESGtNDPm 163 (574)
T COG3263 85 RVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNL-NERVASTLEIESGSNDPM 163 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCCh-hhhhhhhEEeecCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999988887 778888888899999988
Q ss_pred HHHHH-HHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 001096 758 VVVLL-ILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTS 836 (1158)
Q Consensus 758 aIvll-~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a 836 (1158)
++++. +++-.+..+. .+..+..+ + .++....++.++++.+++. ...+.+++ +-...++.+++++..+.++
T Consensus 164 AvfLTitlieli~~ge--t~l~~~~l---l-~f~~q~glG~l~G~~gg~l-~~~~Inr~--nLd~GL~pil~la~~Ll~f 234 (574)
T COG3263 164 AVFLTITLIELIAGGE--TNLSWGFL---L-GFLQQFGLGLLLGLGGGKL-LLQLINRI--NLDSGLYPILALAGGLLIF 234 (574)
T ss_pred eeehhHHHHHHHhccc--cccCHHHH---H-HHHHHhhHHHHHHHHHHHH-HHHHHHhh--ccccchhHHHHHHHHHHHH
Confidence 77665 5555554331 11333221 1 1233445555555555543 34444554 2335567778888999999
Q ss_pred HHHHHhCchHHHHHHHHHHhhcccc--hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHHHHHHHHH
Q 001096 837 LLTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKT 913 (1158)
Q Consensus 837 ~lae~lGls~vLGAFvAGLiL~n~~--~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~-~~~vllllvl~ll~K~ 913 (1158)
.++..+|.|+.++.+++|++++|.+ .++.+.+..+.+..+...+.|...|+.++|..++.. .+.+++.+...+++|+
T Consensus 235 s~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP 314 (574)
T COG3263 235 SLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARP 314 (574)
T ss_pred HHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999986 456677777888889999999999999999998874 4555666777889999
Q ss_pred HHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccch-hhhHHHHHHHHHHHHHhHHHHHhhhhhHHhhhhh
Q 001096 914 ILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMS-SQLSSLLFLLVGISMALTPWLAAGGQLIASRFEQ 992 (1158)
Q Consensus 914 l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs-~elfsiLvlvVVlS~IitPlL~~~~~~la~r~~~ 992 (1158)
+++|+...-++++++|.+++++. .-||.++++++...+-.|.-+ .-.|++.++++++|.++..+... +.++|+.-
T Consensus 315 ~aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~---~~a~~l~~ 390 (574)
T COG3263 315 LAVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLP---WAAKKLKV 390 (574)
T ss_pred HHHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcch---HHHHhccc
Confidence 99999999999999999988874 789999999999887777644 45678888888888877432221 12222221
Q ss_pred hcccc---cCccCcccccccccccc-----cCCcccHHHHHHHHhhCCCCEEEEeCCchHH-----HHhhhCCCCEEEcc
Q 001096 993 HDVRS---LLPVESETDDLQDHIIL-----CGFGRVGQIIAQLLSERLIPFVALDVRSDRV-----AIGRALDLPVYFGD 1059 (1158)
Q Consensus 993 ~~~r~---l~~~e~~~~~l~~hvVI-----iG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v-----~~l~~~g~~vi~GD 1059 (1158)
....+ +.+.+.+..+-.+|=++ -+.-.+|..+-..-..++..+..+=+|.+.+ .++++.+.-+++|.
T Consensus 391 i~p~~~~pv~k~~ld~~~ta~~El~~y~~~k~~~~ig~~lr~l~~p~~~~~~~v~Rd~q~i~p~g~t~l~~gD~l~v~~~ 470 (574)
T COG3263 391 IVPPRGGPVSKVGLDIHPTANWELFVYELAKDKWCVGAALRNLRMPKWTRIAAVFRDGQLIHPQGSTRLREGDVLCVIGS 470 (574)
T ss_pred ccCCCCCCcccccccCCCCCChhheeeehhcCCcccchhhhhccCCccceeeeEEecCceeccCCCceeecCCEEEEEec
Confidence 11000 00111111111111111 1111223333333333444566666665544 24455566677777
Q ss_pred CCCHHHHHhcC
Q 001096 1060 AGSREVLHKVG 1070 (1158)
Q Consensus 1060 asd~e~L~~Ag 1070 (1158)
..|...+.+.=
T Consensus 471 ~~d~~~l~~Lf 481 (574)
T COG3263 471 ERDLRALGKLF 481 (574)
T ss_pred cccHHHHHHHH
Confidence 77777776653
No 14
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.8e-26 Score=267.86 Aligned_cols=343 Identities=23% Similarity=0.245 Sum_probs=273.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC--chhHHHHHHHHHHHHHHHHHhcCChhHHH
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~--~~~l~~LaeLGLi~LLF~aGLelDl~~Lr 678 (1158)
..++.+.++++++.+...+.+|+ +.|.+..+++.|++.||.+++.+.. ....+.+..+++++++|..|+++|.+.+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l-~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~ 84 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRL-LLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELR 84 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence 44577788888899999999999 8999999999999999998888765 34567777999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhH
Q 001096 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVS-GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1158)
Q Consensus 679 r~~k~il~Lai~gvllt~iivglll~~ll-Gls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~ 757 (1158)
+.++.++.+++.+++++++++|+++|+++ ++++..++++|+++++|+|+++.+++++.+. ++++.+++.+++++||..
T Consensus 85 ~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~v-p~ri~~iL~gESl~ND~~ 163 (429)
T COG0025 85 RVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRV-PKRIRTILEGESLLNDGV 163 (429)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCCC-CHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999876 6788899999999999999999999999876 889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHH
Q 001096 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAEN--QNAEIFSANTLLVILGT 835 (1158)
Q Consensus 758 aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~--~~~el~~l~iL~v~l~~ 835 (1158)
+++++.+...+....... + .......++...++++.+++++| ++.+++++++.++ .........++..+++.
T Consensus 164 giv~f~~~l~~~~~~~~~--~---~~~~~~~fl~~~~~g~~~G~~iG-~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~ 237 (429)
T COG0025 164 GIVLFKVALAALLGTGAF--S---LGWALLLFLIEALGGILLGLLLG-YLLGRLLRRLDRRGWTSPLLETLLTLLLAFAA 237 (429)
T ss_pred HHHHHHHHHHHHhccCCC--c---hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 999996655444321111 1 11233344455566666666666 4456667777653 22344456678999999
Q ss_pred HHHHHHhCchHHHHHHHHHHhhccc------c--hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHH
Q 001096 836 SLLTARAGLSMALGAFLAGLLLAET------E--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALG 906 (1158)
Q Consensus 836 a~lae~lGls~vLGAFvAGLiL~n~------~--~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~-~~~vllllv 906 (1158)
+.+++.+|.|++++++++|+++++. + ......+..+.+.-+++.++|+++|++++...+... ++.++++++
T Consensus 238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~ 317 (429)
T COG0025 238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALV 317 (429)
T ss_pred HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999988521 1 112222233334567899999999999998887664 455677778
Q ss_pred HHHHHHHHHHHHHHHhcC------CChhhHHHHhhhccccchhhHHHHHHHH
Q 001096 907 LLIGGKTILVALVGRLFG------VSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1158)
Q Consensus 907 l~ll~K~l~v~l~~~~~g------~~~real~lgL~La~rG~valvla~ia~ 952 (1158)
+.+++|++++++..+..+ .++++++++++. ++||.++++++....
T Consensus 318 ~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p 368 (429)
T COG0025 318 AVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIP 368 (429)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHch
Confidence 889999999999998743 789999988885 999999998877533
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.95 E-value=5.9e-25 Score=266.25 Aligned_cols=357 Identities=14% Similarity=0.100 Sum_probs=249.1
Q ss_pred HHHHHHHHHh-cCCCchHHHHHHHHHhhccccccc--cc-CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHH
Q 001096 613 SVIFVPIFQK-IPGGSPVLGYLAAGILIGPYGLSI--IR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLG 688 (1158)
Q Consensus 613 a~ilg~Ll~R-l~glP~VVG~ILaGILLGP~gLgl--i~-~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~La 688 (1158)
+.+...+..| .+++|..+..++.|+++|+...+. .+ ..-..+.+..+.++.++|.+|++++.+.++++.+.++.++
T Consensus 21 ~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lA 100 (559)
T TIGR00840 21 AKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFA 100 (559)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3333344444 446999999999999999753322 22 2234578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh--------CCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHH
Q 001096 689 SAQVLVTAVVVGLVAHFVS--------GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVV 760 (1158)
Q Consensus 689 i~gvllt~iivglll~~ll--------Gls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIv 760 (1158)
+++++++++++|+.+|++. +++|..++++|+++++|+|+++.+++++.+. +.++..++.++|++||.++++
T Consensus 101 v~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v-~~~L~~ll~gESllNDavaIV 179 (559)
T TIGR00840 101 VVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHV-NEKLYIIIFGESLLNDAVTVV 179 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCC-CcchhhheehhhhhhccHHHH
Confidence 9999999999999887642 4589999999999999999999999999986 888999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 001096 761 LLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA 840 (1158)
Q Consensus 761 ll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae 840 (1158)
++.++..+.... .++.....+...+...++..++++++++++|+. ...++++....+ .....+++++++++|++++
T Consensus 180 Lf~~~~~~~~~~-~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l-~~~l~r~~~~~~--~~e~~l~l~~~yl~Y~lAE 255 (559)
T TIGR00840 180 LYNTFIKFHKTA-DEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFL-VAFITRFTHHIR--QIEPLFVFLISYLSYLFAE 255 (559)
T ss_pred HHHHHHHHHhcC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccc--hhHHHHHHHHHHHHHHHHH
Confidence 996655443211 112222223333333333344566666666643 344555543222 2334456888899999999
Q ss_pred HhCchHHHHHHHHHHhhccc---chhHHHH----HhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHH
Q 001096 841 RAGLSMALGAFLAGLLLAET---EFSLQVE----SDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKT 913 (1158)
Q Consensus 841 ~lGls~vLGAFvAGLiL~n~---~~~~~l~----e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~ 913 (1158)
.+|+|++++++++|+++++. ...++.. ...+.+..++..+.|+++|+.+........|..+++.+++.+++|+
T Consensus 256 ~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~ 335 (559)
T TIGR00840 256 TLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRV 335 (559)
T ss_pred HhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999752 1222222 2333445678899999999976322111134434445566678999
Q ss_pred HHHHHHHHh------cCCChhhHHHHhhhccccchhhHHHHHHHHhhccch-hhhHHHHHHHHHHHHHh
Q 001096 914 ILVALVGRL------FGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMS-SQLSSLLFLLVGISMAL 975 (1158)
Q Consensus 914 l~v~l~~~~------~g~~~real~lgL~La~rG~valvla~ia~~~giIs-~elfsiLvlvVVlS~Ii 975 (1158)
+++++..+. .++++++.+.+++. .+||.++++++......+.-. +.+..+.+.++++|+++
T Consensus 336 l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvlv 403 (559)
T TIGR00840 336 LGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIF 403 (559)
T ss_pred HHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHH
Confidence 998877654 35788999988874 789999998876433222222 23333333444445444
No 16
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.89 E-value=3.3e-21 Score=224.65 Aligned_cols=146 Identities=24% Similarity=0.240 Sum_probs=136.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
++|+||||+|++|+.+++.|+++|++|++||.| ..+...+.|+++++||++|+++|+++|+++|+++|++++||..|+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d--~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL--GLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc--hhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 799999999999999999999999999999987 345566678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhhh-hhhhhHHHHhcc
Q 001096 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQVI-HDYQREKVFRSG 1156 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~~i-~~~~~~~vf~~~ 1156 (1158)
.+++++|+++|+.+|+++++|+++.++++++|+|.||+|...+++.|++.+..+.+ .+.+++.+|++.
T Consensus 318 ~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g~~I~~~~i~~~~~~~~ 386 (393)
T PRK10537 318 FVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNGEEIDNDMITSMLFNSG 386 (393)
T ss_pred HHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcCCCCCHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999998877 566777777653
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.83 E-value=9e-19 Score=206.34 Aligned_cols=341 Identities=17% Similarity=0.152 Sum_probs=239.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHhhcccccccc----c-----CchhHHHHHHHHHHHHHHHHH
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKI--PGGSPVLGYLAAGILIGPYGLSII----R-----HVHGTKAIAEFGVVFLLFNIG 669 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl--~glP~VVG~ILaGILLGP~gLgli----~-----~~~~l~~LaeLGLi~LLF~aG 669 (1158)
..++.++.+++++.+.++++++- ..+|.-+.-++.|+++|-.....- . .....+.+-.+.+..++|..|
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sg 114 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSG 114 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhccc
Confidence 44577778888899999999865 238999999999999995322111 1 123346888889999999999
Q ss_pred hcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchh
Q 001096 670 LELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV------SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRH 743 (1158)
Q Consensus 670 LelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~l------lGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~ 743 (1158)
.+++.+.+.++...++.+++.|++++..++|..++++ .++++..++++|+++++|+|+.++.++++++. ...+
T Consensus 115 y~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~L 193 (575)
T KOG1965|consen 115 YSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPKL 193 (575)
T ss_pred ceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccce
Confidence 9999999999999999999999999988888877765 36789999999999999999999999999997 5667
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcch
Q 001096 744 GRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIA--ENQNA 821 (1158)
Q Consensus 744 GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~--~~~~~ 821 (1158)
-.++.|++++||.++|+++..+............. ...++.++....++.++++.+|. +.-.+++.+. +.+..
T Consensus 194 y~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~----~~~ig~Fl~~F~gS~~lGv~~Gl-isA~~lK~~~l~~~~~l 268 (575)
T KOG1965|consen 194 YTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTA----FSAIGNFLYTFFGSLGLGVAIGL-ISALVLKFLYLRRTPSL 268 (575)
T ss_pred eeeeecchhccchhHHHHHHHHHHHccCCchhhhH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcHH
Confidence 89999999999999999997776654432211111 12333332223333333333331 1112223222 33444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccc---hhHH----HHHhHHhHHHHHHHHHHHHHhccc-Chhh
Q 001096 822 EIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE---FSLQ----VESDIAPYRGLLLGLFFMTVGMSI-DPKL 893 (1158)
Q Consensus 822 el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~---~~~~----l~e~l~~~~~~flPlFFvliGm~i-dl~~ 893 (1158)
| +.+++++.+..|++||.+|+++++..+.+|++++... +..+ ..+.++.+.-+-..+.|+++|+.+ +...
T Consensus 269 E--~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k 346 (575)
T KOG1965|consen 269 E--SALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQK 346 (575)
T ss_pred H--HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 4 4456889999999999999999999999999999642 1111 222333344566888999999743 3333
Q ss_pred hhhh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhH----------HHHhhhccccchhhHHHHH
Q 001096 894 LLSN-FPVITGALGLLIGGKTILVALVGRLFGVSVISA----------IRTGLLLAPGGEFAFVAFG 949 (1158)
Q Consensus 894 L~~~-~~~vllllvl~ll~K~l~v~l~~~~~g~~~rea----------l~lgL~La~rG~valvla~ 949 (1158)
+... +..++...++++++|.+-++....+.+.-+|.. ..+.+.-.-||.++++++.
T Consensus 347 ~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~ 413 (575)
T KOG1965|consen 347 HVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALAL 413 (575)
T ss_pred eeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHh
Confidence 3322 234566677788999999888887765433333 3333333358988888776
No 18
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.79 E-value=4.5e-19 Score=172.18 Aligned_cols=116 Identities=31% Similarity=0.467 Sum_probs=110.6
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHHH
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~ 1091 (1158)
++|||+|++|+.+++.|.+.+++|++||.|++.++.+++.|+++++||++++++|+++++++|+.++++++||..|+.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 58999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecC
Q 001096 1092 WALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1092 l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p 1127 (1158)
+.+|+++|+.+|+++++++++.+.|+++|+|+||.|
T Consensus 81 ~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 81 LLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 999999999999999999999999999999999987
No 19
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=7.4e-17 Score=175.71 Aligned_cols=138 Identities=29% Similarity=0.316 Sum_probs=130.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhh--hCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR--ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~--~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.++|+|.|++|..+++.|.+.|++|++||.|++++++.. +.+.+++.||++++++|++||+++||++|++|++|+.|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~ 81 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNS 81 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHH
Confidence 478999999999999999999999999999999998844 479999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhhhhhhh
Q 001096 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQVIHDYQ 1148 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~~i~~~~ 1148 (1158)
.+|..+++.+...++|||+++.++.+.+++.|+|+++.|+..++..+++.+..|...+++
T Consensus 82 i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~ 141 (225)
T COG0569 82 VLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTPGALDVL 141 (225)
T ss_pred HHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcCCChheEE
Confidence 999999997777799999999999999999999999999999999999999999887765
No 20
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.63 E-value=7.1e-13 Score=154.59 Aligned_cols=269 Identities=20% Similarity=0.234 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhH----HHhchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVER----LSSMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~----Lrr~~k~il--~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~T 724 (1158)
.....+.+.-+.+++|.+|+|+..+. |++.++..+ .-++.|+++|.+ + |+.++.......-=-.+-.+|
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPal-i----y~~~n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPAL-I----YVAVNLAGGGALRGWAIPTAT 135 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHH-H----HHHHhCCchhhhhhhhhhhhh
Confidence 44567788888899999999996643 333333332 456677777753 2 223332211111111233569
Q ss_pred cHHHHHHHHHhcCCC-CchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 725 STAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1158)
Q Consensus 725 S~aVVv~iL~el~ll-~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~li 803 (1158)
|.+.++.+|..+|.. ++..+..+++.+++||+.++++++++. +++..+.. +. ..++.++
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY-------t~~i~~~~----L~----~a~~~~~----- 195 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY-------TSELNLEA----LL----LALVPLA----- 195 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc-------CCCCCHHH----HH----HHHHHHH-----
Confidence 999999999998865 778888999999999999998887652 12223211 11 0111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhccc------------chhHHHHHhHH
Q 001096 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET------------EFSLQVESDIA 871 (1158)
Q Consensus 804 g~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~------------~~~~~l~e~l~ 871 (1158)
..++++ + .+.+..+.. +.+.+++++.....|+|+.+|+|++|+++|.. +..++++++++
T Consensus 196 ~l~~l~----~---~~V~~~~~Y--~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~ 266 (423)
T PRK14853 196 LFWLLV----Q---KRVRKWWLL--LPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR 266 (423)
T ss_pred HHHHHH----H---cCCchhhHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence 111111 1 112222222 22344667788999999999999999999842 22467888999
Q ss_pred hH-HHHHHHHH-HHHHhcccCh-hhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHhhh
Q 001096 872 PY-RGLLLGLF-FMTVGMSIDP-KLLLSNF--PVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLL 936 (1158)
Q Consensus 872 ~~-~~~flPlF-FvliGm~idl-~~L~~~~--~~vllllvl~ll~K~l~v~l~~~~~----------g~~~real~lgL~ 936 (1158)
++ ..+++|+| |+.+|+++|. ..+...+ +..+.+++..+++|+++++..++.. +++|++-+.+|++
T Consensus 267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L 346 (423)
T PRK14853 267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALL 346 (423)
T ss_pred HHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 98 57889999 9999999986 4342222 3456677788899999988877652 4567777766664
Q ss_pred ccccchhhHHHHHHHHh
Q 001096 937 LAPGGEFAFVAFGEAVN 953 (1158)
Q Consensus 937 La~rG~valvla~ia~~ 953 (1158)
-.-.=++++.+...++.
T Consensus 347 ~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 347 AGIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 33333667777777773
No 21
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.4e-13 Score=148.82 Aligned_cols=326 Identities=17% Similarity=0.105 Sum_probs=223.5
Q ss_pred HHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHH
Q 001096 619 IFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV 692 (1158)
Q Consensus 619 Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~------~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gv 692 (1158)
+-.|+ -+...+.-.+.|+++||+.+++..+. .....+..+-+.+=.|.+++|+...-+.+.++.++.+-..-+
T Consensus 32 ikekL-llgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVm 110 (467)
T KOG4505|consen 32 IKEKL-LLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVM 110 (467)
T ss_pred HHHhH-hccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33455 34455555689999999999987643 234677888888889999999999999999998887766655
Q ss_pred HHHHHHHHHHHHHH-hCCChHHHHHHhhccccCcHHHHHHHHHhcCC---CCchhhHHHHHHHhhhhhHHHHHHHHHH-H
Q 001096 693 LVTAVVVGLVAHFV-SGLPGPASIVIGNGLALSSTAVVLQVLQERGE---STSRHGRATFSVLLFQDLAVVVLLILIP-L 767 (1158)
Q Consensus 693 llt~iivglll~~l-lGls~~~AlllGaiLs~TS~aVVv~iL~el~l---l~s~~GrlaLs~sllnDi~aIvll~ll~-~ 767 (1158)
+.-+++.+.+.+.+ .+++...++++++.+++|+|.....+..+.+. .+.++..++.+++..||.+++.++.+.. .
T Consensus 111 i~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~L 190 (467)
T KOG4505|consen 111 IIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDL 190 (467)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 55555544455544 48899999999999999999998888864433 3556667788889999999988774432 2
Q ss_pred H-hcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHhCc
Q 001096 768 I-SPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAEN--QNAEIFSANTLLVILGTSLLTARAGL 844 (1158)
Q Consensus 768 l-a~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~--~~~el~~l~iL~v~l~~a~lae~lGl 844 (1158)
+ ....-.++-.+. ....+.....+..++.++| ++.|..++.-.++ -+.|.|..+-+++++.+..+...+|+
T Consensus 191 l~h~~~r~~~rdwv-----~~~iLyec~fg~llG~vIG-~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiGv 264 (467)
T KOG4505|consen 191 LRHKPRRKAGRDWV-----CDNILYECFFGCLLGCVIG-YLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIGV 264 (467)
T ss_pred HhcCchhccCCcee-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheech
Confidence 2 222112222221 1112234444555555555 4556555554443 36777888888889999999999999
Q ss_pred hHHHHHHHHHHhhcccc-hhHHHH-HhHHhH-HHHHHHHHHHHHhcccChhhhhhh------hhhHHHHHHHHHHHHHHH
Q 001096 845 SMALGAFLAGLLLAETE-FSLQVE-SDIAPY-RGLLLGLFFMTVGMSIDPKLLLSN------FPVITGALGLLIGGKTIL 915 (1158)
Q Consensus 845 s~vLGAFvAGLiL~n~~-~~~~l~-e~l~~~-~~~flPlFFvliGm~idl~~L~~~------~~~vllllvl~ll~K~l~ 915 (1158)
+-.+-.|.||++++-.. +..+.. .++..+ ..++...||++.|..++.+.+... |..+++-+.+.++-|+-.
T Consensus 265 ddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~ 344 (467)
T KOG4505|consen 265 DDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPA 344 (467)
T ss_pred hHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccce
Confidence 99999999999999654 444333 244444 456788899999999998887553 444444444444445555
Q ss_pred HHHHHHhc--CCChhhHHHHhhhccccchhhHHHHHHHH
Q 001096 916 VALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1158)
Q Consensus 916 v~l~~~~~--g~~~real~lgL~La~rG~valvla~ia~ 952 (1158)
+++.-.+. =.+|||++++|- ..|.|.-++..+..+.
T Consensus 345 v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 345 VYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred EEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 55543332 136999999997 4899887777666554
No 22
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.56 E-value=1.5e-14 Score=172.01 Aligned_cols=138 Identities=16% Similarity=0.138 Sum_probs=129.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC--CCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~--g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
.+|++|||+|++|+.+++.|.+.|++|++||.|+++++.+++. ++++++||++++++|+++++++|+.||++++||..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~ 310 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEA 310 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHH
Confidence 6899999999999999999999999999999999999888764 78899999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhhhhhh
Q 001096 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQVIHDY 1147 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~~i~~~ 1147 (1158)
|+.+++.+|++++. +|++++++.++.+.++.+|+|.|+.|+..++..++..+..|.+.++
T Consensus 311 n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~~~~~~~ 370 (453)
T PRK09496 311 NILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRRGDIVAV 370 (453)
T ss_pred HHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhccchhhh
Confidence 99999999999875 9999999999999999999999999999999999999999876543
No 23
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.47 E-value=1.5e-13 Score=163.56 Aligned_cols=137 Identities=23% Similarity=0.259 Sum_probs=126.7
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
|++|||+|++|+.+++.|.+.|++|+++|.|+++++.+++ .|+++++||++++.+|+++++++++.+|+++++|..|..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~ 81 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNMV 81 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHHH
Confidence 6899999999999999999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecChhh---HHHH--HHCCCCeeecCCcHHHHHHHHHHHHhhhhhh
Q 001096 1090 TVWALSKYFPNVKTFVRAHDIDH---GLNL--EKAGATAVVPETLEPSLQLAAAVLAQVIHDY 1147 (1158)
Q Consensus 1090 i~l~ar~l~p~~~IIara~d~e~---~~~L--~~aGAd~VI~p~~~a~~~LA~~vl~~~i~~~ 1147 (1158)
++..+|+++|+.++|+++++.++ ...+ +++|++.||.|...++..|+..+..|...++
T Consensus 82 ~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~~~~~~~ 144 (453)
T PRK09496 82 ACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEYPGALDV 144 (453)
T ss_pred HHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcCCCceEe
Confidence 99999999999999999988776 3344 7899999999999999999999988876544
No 24
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=8.1e-12 Score=129.93 Aligned_cols=144 Identities=40% Similarity=0.511 Sum_probs=136.4
Q ss_pred cccccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1005 TDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1005 ~~~l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
...+.+|+++||+|++|+.+.+.|...+.+++++|.|++.++.++..|+.+++||+++.++|..++++.|+.+++++.++
T Consensus 17 ~~~l~~~~ii~g~~~~g~~~~~~l~~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~vi~~~~~~ 96 (212)
T COG1226 17 IVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARAVIVTLSDD 96 (212)
T ss_pred cccCCCCEEEEcCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCcEEEecCCCHHHHHhcChhheeEEEEecCCH
Confidence 55778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCCceEEEEecC-hhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhhhhhhh
Q 001096 1085 GANYRTVWALSKYFPNVKTFVRAHD-IDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQVIHDYQ 1148 (1158)
Q Consensus 1085 ~~Nl~i~l~ar~l~p~~~IIara~d-~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~~i~~~~ 1148 (1158)
..|..++..++..+|+.+++++.++ ......+...|++.++++....+..+++.++.+......
T Consensus 97 ~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 161 (212)
T COG1226 97 ATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSV 161 (212)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchh
Confidence 9999999999999999999999999 778899999999999999999999999999888665443
No 25
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.35 E-value=8.5e-13 Score=155.48 Aligned_cols=316 Identities=14% Similarity=0.072 Sum_probs=202.4
Q ss_pred CchHHHHHHHHHhhcccccccc--c-CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHH
Q 001096 626 GSPVLGYLAAGILIGPYGLSII--R-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLV 702 (1158)
Q Consensus 626 lP~VVG~ILaGILLGP~gLgli--~-~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivgll 702 (1158)
+|.-...|+.|+++|-...+.- . ..-....+--.-++.|+|.+|.-|.-+.+..+...++..+++|++.-++.+|..
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~s 147 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGAS 147 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 6777888999999986543332 1 111235566667888999999999999999999999999999999876666654
Q ss_pred HHH-----HhC--CChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCC
Q 001096 703 AHF-----VSG--LPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKG 775 (1158)
Q Consensus 703 l~~-----llG--ls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g 775 (1158)
++. ++| .+...-+++|.++++.+|+.|+.++.|... |.-+--++.+++++||.+.++++-+...+..-.+ .
T Consensus 148 L~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~-~ 225 (670)
T KOG1966|consen 148 LYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGS-D 225 (670)
T ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcc-c
Confidence 443 345 346789999999999999999999999987 6667788899999999999999844322211100 0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Q 001096 776 GVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGL 855 (1158)
Q Consensus 776 ~~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGL 855 (1158)
..........+..++...++|+++++++++. ..-..++-..-+.-+ .++++++.+.+|+.+|.+++|++++..++|+
T Consensus 226 n~~~~d~~~G~~sFfVVslGG~lvGivfafl-~sl~tkft~~vrvie--Pvfif~~pYlaYL~aEm~hlSgIlAii~CG~ 302 (670)
T KOG1966|consen 226 NLTTIDYVLGVVSFFVVSLGGALVGIVFAFL-ASLVTKFTKHVRVLE--PVFIFLLPYLAYLTAEMFHLSGILAIIFCGL 302 (670)
T ss_pred ceeEeeeecceeEEEEEecCchhHHHHHHHH-HHHHHHhhcceeeec--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000001111111223333444444322 222222222112222 3456888999999999999999999999999
Q ss_pred hhccc---chhHHHHHhHHh----HHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcC----
Q 001096 856 LLAET---EFSLQVESDIAP----YRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFG---- 924 (1158)
Q Consensus 856 iL~n~---~~~~~l~e~l~~----~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g---- 924 (1158)
++... ...++....... +...-.++.|++.|.++--..-.+++..+.+.++..++.|.+++++.+++.+
T Consensus 303 ~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~ 382 (670)
T KOG1966|consen 303 CMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRM 382 (670)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhhe
Confidence 99864 222333322222 2445578889999987632211123444555666677889999888887753
Q ss_pred --CChhhHHHHhhhccccchhhHHH
Q 001096 925 --VSVISAIRTGLLLAPGGEFAFVA 947 (1158)
Q Consensus 925 --~~~real~lgL~La~rG~valvl 947 (1158)
+++.+.+.++.+ .-||.+++.+
T Consensus 383 ~k~~~~DQfimsyG-GLRGAiaF~L 406 (670)
T KOG1966|consen 383 VKLEFVDQFIMSYG-GLRGAIAFGL 406 (670)
T ss_pred eeccccceeeeecC-CcchhhheeE
Confidence 455555555443 4566555443
No 26
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.27 E-value=2.3e-09 Score=123.45 Aligned_cols=268 Identities=19% Similarity=0.202 Sum_probs=156.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhcccc
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLAL 723 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~Lr----r~~k~il--~Lai~gvllt~iivglll~~llGls~~-~AlllGaiLs~ 723 (1158)
.....+.+.-+.+++|.+|+|+..+.+. +.+|..+ .-++.|+++|.+ + |..++.... ..--.| +=.+
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-i----y~~~n~~~~~~~~GW~-IP~A 124 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-I----YLAFNANDPITREGWA-IPAA 124 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-H----HhheecCCCcccCccc-cccH
Confidence 4456777888889999999999877554 2233322 345666766653 2 222222100 000111 2234
Q ss_pred CcHHHHHHHHHhcCC-CCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1158)
Q Consensus 724 TS~aVVv~iL~el~l-l~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~l 802 (1158)
|+++..+.++.=+|. .+...-..+++.+++||+.++++.+++. . .+..+.. + .++.++..
T Consensus 125 TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t----~~i~~~~----L-------~~a~~~~~- 185 (373)
T TIGR00773 125 TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---T----NDLSMAA----L-------LVAAVAIA- 185 (373)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---C----CCCCHHH----H-------HHHHHHHH-
Confidence 777766666654443 2444456677889999999988776541 1 1222211 1 11111111
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccc-----hhHHHHHhHHhHH-HH
Q 001096 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYR-GL 876 (1158)
Q Consensus 803 ig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~-----~~~~l~e~l~~~~-~~ 876 (1158)
..+++ ++. ..+...... ++ .+..++.....|+|+.+|+|++|+++|..+ ..+++++.+.+.. .+
T Consensus 186 -~l~~~----~~~---~v~~~~~y~-~l-gvllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~l 255 (373)
T TIGR00773 186 -VLAVL----NRC---GVRRLGPYM-LV-GVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYL 255 (373)
T ss_pred -HHHHH----HHc---CCchhhHHH-HH-HHHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHH
Confidence 11111 221 122222222 22 223333337999999999999999999742 2356778888874 56
Q ss_pred HHHHH-HHHHhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHhhhccccchhh
Q 001096 877 LLGLF-FMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFA 944 (1158)
Q Consensus 877 flPlF-FvliGm~idl~~L~~~-~~~vllllvl~ll~K~l~v~l~~~~~----------g~~~real~lgL~La~rG~va 944 (1158)
++|+| |+..|.++|...+... .+..+.+++..+++|+++++..++.. +++|++-.-+|+.-.-.=+++
T Consensus 256 ilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmS 335 (373)
T TIGR00773 256 ILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMS 335 (373)
T ss_pred HHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999 9999999986554322 34456677778899999998877752 456777666666422233566
Q ss_pred HHHHHHHHh
Q 001096 945 FVAFGEAVN 953 (1158)
Q Consensus 945 lvla~ia~~ 953 (1158)
+.+...++.
T Consensus 336 lfI~~LAf~ 344 (373)
T TIGR00773 336 IFIASLAFG 344 (373)
T ss_pred HHHHHHhcC
Confidence 667777773
No 27
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.12 E-value=1.5e-08 Score=118.55 Aligned_cols=268 Identities=20% Similarity=0.244 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~Lr----r~~k~il--~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~T 724 (1158)
.....+.+..+.+++|.+|+|+..+.+. +.++..+ .-++.|+++|.+ +|+.++.+....--.| +-.+|
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl-----IY~~~n~~~~~~~GWg-IPmAT 140 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL-----IYFFLNADTPSQHGFG-IPMAT 140 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH-----HHhheecCCCccCccc-cccHH
Confidence 4456788888889999999998776554 2233322 345666666653 2333322211111112 22447
Q ss_pred cHHHHHHHHHhcCCC-CchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 725 STAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1158)
Q Consensus 725 S~aVVv~iL~el~ll-~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~li 803 (1158)
+++.++.++.=+|.. +..+-..+++.+++||+.++++.+++. . .+..+. ..+++.+++.+
T Consensus 141 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~-----------~L~~a~~~~~~- 201 (438)
T PRK14856 141 DIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---T----TNLKFA-----------WLLGALGVVLV- 201 (438)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C----CCCcHH-----------HHHHHHHHHHH-
Confidence 888777777555432 334556778889999999988776541 1 122221 11111111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccch---------------------
Q 001096 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEF--------------------- 862 (1158)
Q Consensus 804 g~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~--------------------- 862 (1158)
.++. ++.. ..+.-.| +.+.+.+++....-|+|+.++.++.|+++|-.+.
T Consensus 202 -l~~l----n~~~-v~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 202 -LAVL----NRLN-VRSLIPY----LLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred -HHHH----HHcC-CccccHH----HHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 1111 2211 1222222 2344555666788999999999999999985310
Q ss_pred ------------------------hHHHHHhHHhHHH-HHHHHH-HHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001096 863 ------------------------SLQVESDIAPYRG-LLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILV 916 (1158)
Q Consensus 863 ------------------------~~~l~e~l~~~~~-~flPlF-FvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v 916 (1158)
-+++++.+.+... +.+|+| |.-.|..++.......-++.+.+++..++||++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHH
Confidence 1335556666644 668888 88889888754322223455667778889999998
Q ss_pred HHHHHhc----------CCChhhHHHHhhhccccchhhHHHHHHHHh
Q 001096 917 ALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1158)
Q Consensus 917 ~l~~~~~----------g~~~real~lgL~La~rG~valvla~ia~~ 953 (1158)
+..++.. +++|++-+-+|+.-...=++++.+...++.
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8877752 456777666665422233666777777773
No 28
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.92 E-value=6.2e-07 Score=103.42 Aligned_cols=269 Identities=16% Similarity=0.186 Sum_probs=155.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~Lr----r~~k~il--~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~T 724 (1158)
...+.+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.|+++|.+ + |+.++.+....--.| +=..|
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-I----y~~~n~~~~~~~GW~-IP~AT 128 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-I----YLSINHDIKVINGWA-IPSAT 128 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-H----HHhhccCCcccCccc-cccHH
Confidence 3456778888889999999998776544 2233322 345666776653 2 222222211011111 22347
Q ss_pred cHHHHHHHHHhcCC-CCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1158)
Q Consensus 725 S~aVVv~iL~el~l-l~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~li 803 (1158)
+++..+.++.=+|- .+...--.+++.+++||+.++++.+++. . .+..+.. + .++.++..
T Consensus 129 DIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~~----L-------~~A~~~~~-- 188 (383)
T PRK14854 129 DIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---T----KSLSLLS----L-------SLGTLFIL-- 188 (383)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C----CCccHHH----H-------HHHHHHHH--
Confidence 77776666654443 2334445566779999999988776541 1 1222211 1 11111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccc-----hhHHHHHhHHhHH-HHH
Q 001096 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYR-GLL 877 (1158)
Q Consensus 804 g~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~-----~~~~l~e~l~~~~-~~f 877 (1158)
..++ +++..+-++.-.| +.+.+..++....-|+|+.++.++.|+++|..+ --+++++.+.++. .+.
T Consensus 189 ~l~~----~nr~~~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~I 260 (383)
T PRK14854 189 AMII----CNRIFKINRSSVY----VVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFI 260 (383)
T ss_pred HHHH----HHHhcCCceehHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhh
Confidence 1111 1222111222223 234455566678899999999999999999631 1356888888874 466
Q ss_pred HHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHhhhccccchhhH
Q 001096 878 LGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAF 945 (1158)
Q Consensus 878 lPlF-FvliGm~idl~~L~~-~~~~vllllvl~ll~K~l~v~l~~~~~----------g~~~real~lgL~La~rG~val 945 (1158)
+|+| |.-.|..++-..+.. ..++.+.+++..++||+++++..++.. +.+|++-+.+|+.-...=++++
T Consensus 261 lPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 340 (383)
T PRK14854 261 LPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSL 340 (383)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888 778888874222221 124456677778899999988877652 3567777766664333336667
Q ss_pred HHHHHHHh
Q 001096 946 VAFGEAVN 953 (1158)
Q Consensus 946 vla~ia~~ 953 (1158)
.++..++.
T Consensus 341 FIa~LAF~ 348 (383)
T PRK14854 341 FIGVLAFN 348 (383)
T ss_pred HHHHhhCC
Confidence 77777774
No 29
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.88 E-value=6.1e-07 Score=103.92 Aligned_cols=267 Identities=20% Similarity=0.193 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhcccc
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLAL 723 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~Lr----r~~k~il--~Lai~gvllt~iivglll~~llGls~~-~AlllGaiLs~ 723 (1158)
.....+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.|+++|.+ + |+.++.... ..--.| +=.+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-I----y~~~n~g~~~~~~GWg-IPmA 131 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-I----YAAFNYNNPETLRGWA-IPAA 131 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-H----HheeecCCCcccCccc-cccH
Confidence 3456777888889999999999776554 2233322 345666666653 2 222222100 001111 2234
Q ss_pred CcHHHHHHHHHhcCC-CCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1158)
Q Consensus 724 TS~aVVv~iL~el~l-l~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~l 802 (1158)
|+++..+.++.=+|. .+...-..+++.+++||+.++++.+++. . .+..+.. + ..+.++..
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t----~~i~~~~----L-------~~a~~~~~- 192 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---T----SDLSLPA----L-------ALAAIAIA- 192 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C----CCCCHHH----H-------HHHHHHHH-
Confidence 777777776654443 2334456677889999999988776541 1 1222211 1 11111111
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccc-------hhHHHHHhHHhHHH
Q 001096 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-------FSLQVESDIAPYRG 875 (1158)
Q Consensus 803 ig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~-------~~~~l~e~l~~~~~ 875 (1158)
..+++ ++.. .++.-.| +.+.+..++....-|+|+.++..+.|+++|..+ .-+++++.+.+...
T Consensus 193 -~l~~l----n~~~-v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~ 262 (389)
T PRK09560 193 -VLFLL----NRLG-VTKLTPY----LIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA 262 (389)
T ss_pred -HHHHH----HHcC-CccchHH----HHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence 11121 2211 1122222 233455566678899999999999999999631 13568888899866
Q ss_pred HH-HHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHhhhccccch
Q 001096 876 LL-LGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGE 942 (1158)
Q Consensus 876 ~f-lPlF-FvliGm~idl~~L~~-~~~~vllllvl~ll~K~l~v~l~~~~~----------g~~~real~lgL~La~rG~ 942 (1158)
++ +|+| |.-.|..++-..+.. .-++.+.+++..++||+++++..++.. +.+|++-+.+|+.-.-.=+
T Consensus 263 ~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFT 342 (389)
T PRK09560 263 FAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFT 342 (389)
T ss_pred hhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 55 8888 778888884322322 124456677778899999988877652 4567776666664333336
Q ss_pred hhHHHHHHHH
Q 001096 943 FAFVAFGEAV 952 (1158)
Q Consensus 943 valvla~ia~ 952 (1158)
+++.+...++
T Consensus 343 mSLFIa~LAF 352 (389)
T PRK09560 343 MSLFIGSLAF 352 (389)
T ss_pred HHHHHHHhhc
Confidence 6677777777
No 30
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.84 E-value=9.2e-07 Score=102.32 Aligned_cols=268 Identities=21% Similarity=0.236 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHhhcccc
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPA-SIVIGNGLAL 723 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~Lr----r~~k~il--~Lai~gvllt~iivglll~~llGls~~~-AlllGaiLs~ 723 (1158)
.....+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.|+++|.+ +|+.++.+... .--.| +=.+
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~~~~~~~~GWa-IP~A 131 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNYADPVTREGWA-IPAA 131 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCcccCccc-cccH
Confidence 3456777788889999999999877654 2233222 345666666653 22222221100 01111 2234
Q ss_pred CcHHHHHHHHHhcCC-CCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1158)
Q Consensus 724 TS~aVVv~iL~el~l-l~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~l 802 (1158)
|+++..+.++.=+|. .+...-..+++.+++||+.++++.+++. . .+..+.. + .++.++..
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~~----L-------~~a~~~~~- 192 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---T----SDLSMVS----L-------GVAAVAIA- 192 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C----CCccHHH----H-------HHHHHHHH-
Confidence 777776666644443 2334456677889999999988776541 1 1222210 1 11111111
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccc-----hhHHHHHhHHhHHHH-
Q 001096 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYRGL- 876 (1158)
Q Consensus 803 ig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~-----~~~~l~e~l~~~~~~- 876 (1158)
..++. ++.. .++.-.| +.+.+..++....-|+|+.++..+.|+++|..+ .-+++++.+.+...+
T Consensus 193 -~l~~l----n~~~-v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~ 262 (388)
T PRK09561 193 -VLAVL----NLCG-VRRTSVY----ILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFL 262 (388)
T ss_pred -HHHHH----HHcC-CccchHH----HHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhe
Confidence 11111 2211 1122222 233445566678899999999999999999631 135788889998555
Q ss_pred HHHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHhhhccccchhh
Q 001096 877 LLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFA 944 (1158)
Q Consensus 877 flPlF-FvliGm~idl~~L~~-~~~~vllllvl~ll~K~l~v~l~~~~~----------g~~~real~lgL~La~rG~va 944 (1158)
.+|+| |.-.|..++-..+.. .-++.+.+++..++||+++++..++.. +.+|++-..+|+.-.-.=+++
T Consensus 263 IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmS 342 (388)
T PRK09561 263 ILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMS 342 (388)
T ss_pred eHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68888 778888873222211 123455677778899999988877652 456777666666422233566
Q ss_pred HHHHHHHHh
Q 001096 945 FVAFGEAVN 953 (1158)
Q Consensus 945 lvla~ia~~ 953 (1158)
+.+...++.
T Consensus 343 LFIa~LAF~ 351 (388)
T PRK09561 343 IFIASLAFG 351 (388)
T ss_pred HHHHHHhcC
Confidence 667777774
No 31
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.78 E-value=1.7e-06 Score=101.34 Aligned_cols=265 Identities=20% Similarity=0.207 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~Lr----r~~k~il--~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~T 724 (1158)
.....+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.|+++|.+ +|+.++.+....--.| +-.+|
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAl-----Iy~~~n~~~~~~~GWg-IPmAT 135 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAA-----LYTALNAGGPGASGWG-VPMAT 135 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCccCccc-cccHH
Confidence 3456777788889999999999877554 2223222 345666666653 2333322211111111 22447
Q ss_pred cHHHHHHHHHhcCCC-CchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 725 STAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1158)
Q Consensus 725 S~aVVv~iL~el~ll-~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~li 803 (1158)
+++..+.++.=+|.. +..+-..+++.+++||+.++++.+++. . .+..+. .+ .++.+++.+
T Consensus 136 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~----~L-------~~a~~~~~~- 196 (423)
T PRK14855 136 DIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---T----SGLNLL----AL-------LLAALTWAL- 196 (423)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---C----CCCCHH----HH-------HHHHHHHHH-
Confidence 888777777655542 334556778889999999988775541 1 122221 11 111111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhccc-c-h-------------------
Q 001096 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET-E-F------------------- 862 (1158)
Q Consensus 804 g~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~-~-~------------------- 862 (1158)
.+++ ++.. .++.-.| +.+.+.+++....-|+|+.++.++.|+++|.. + .
T Consensus 197 -l~~l----n~~~-v~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 197 -ALLA----GRLG-VTSLKIY----AVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred -HHHH----HHcC-CccccHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 1111 2211 1122222 23444556667889999999999999999863 1 0
Q ss_pred -----------------hHHHHHhHHhHHH-HHHHHH-HHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001096 863 -----------------SLQVESDIAPYRG-LLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF 923 (1158)
Q Consensus 863 -----------------~~~l~e~l~~~~~-~flPlF-FvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~ 923 (1158)
.+++++.+.+... +.+|+| |.-.|..++-.. .. ++.+.+++..++||+++++..++..
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--TVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1345666677644 468888 778888884322 22 3456667778899999988877752
Q ss_pred ----------CCChhhHHHHhhhccccchhhHHHHHHHHh
Q 001096 924 ----------GVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1158)
Q Consensus 924 ----------g~~~real~lgL~La~rG~valvla~ia~~ 953 (1158)
+++|++-+-+|++-...=++++.++..++.
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 456777666666432333666777777774
No 32
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.71 E-value=1.1e-07 Score=109.90 Aligned_cols=269 Identities=22% Similarity=0.265 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhcccc
Q 001096 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLAL 723 (1158)
Q Consensus 651 ~~l~~LaeLGLi~LLF~aGLelDl~~Lr----r~~k~il--~Lai~gvllt~iivglll~~llGls~~-~AlllGaiLs~ 723 (1158)
.....+.+.-+.+++|.+|+|+..+.+. +.+|..+ .-++.|+++|.+ +|..++...+ ..--.| +-..
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~~~~~~~~GW~-IP~A 127 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNAGGPEAAHGWA-IPMA 127 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG--SSTTHHHHTS-SSS-
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeecCCCCcCceEE-eccc
Confidence 4456778888889999999999776554 3333332 345556666543 2333443222 222222 2345
Q ss_pred CcHHHHHHHHHhcCCC-CchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 724 SSTAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1158)
Q Consensus 724 TS~aVVv~iL~el~ll-~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~l 802 (1158)
|+++..+.++.=.|.. +...-..+++.+++||+.++++.+++. . .+..+. .+ ..+.++..
T Consensus 128 TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FY---t----~~i~~~----~L-------~~a~~~~~- 188 (378)
T PF06965_consen 128 TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFY---T----DGISLL----WL-------LLAAAALL- 188 (378)
T ss_dssp --HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------HH----HH-------HHHHHHHH-
T ss_pred ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeee---C----CCCCHH----HH-------HHHHHHHH-
Confidence 8888888888655432 333456777889999999998876652 1 111211 01 11111111
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccchh---------HHHHHhHHhH
Q 001096 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFS---------LQVESDIAPY 873 (1158)
Q Consensus 803 ig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~---------~~l~e~l~~~ 873 (1158)
..+++ ++.. .++...| +.+.+..++....-|+|+.++..+.|+++|..+.. +++++.+.+.
T Consensus 189 -~l~~l----~r~~-v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~ 258 (378)
T PF06965_consen 189 -LLFVL----NRLG-VRSLWPY----LLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPW 258 (378)
T ss_dssp -HHHHH----HHTT----THHH----HHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHH
T ss_pred -HHHHH----HHCC-CceehHH----HHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhh
Confidence 11111 2211 1122222 23334556666789999999999999999965322 4677888887
Q ss_pred HH-HHHHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHhhhcccc
Q 001096 874 RG-LLLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPG 940 (1158)
Q Consensus 874 ~~-~flPlF-FvliGm~idl~~L~~-~~~~vllllvl~ll~K~l~v~l~~~~~----------g~~~real~lgL~La~r 940 (1158)
.. +.+|+| |.-.|..++-..+.. .-++.+.+++..+++|+++++..++.. +++|++-..+|+.-.-.
T Consensus 259 v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIG 338 (378)
T PF06965_consen 259 VAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIG 338 (378)
T ss_dssp HHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--
T ss_pred hhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 54 558888 888888887655432 123334556667789999888776652 34566655555542223
Q ss_pred chhhHHHHHHHHhh
Q 001096 941 GEFAFVAFGEAVNQ 954 (1158)
Q Consensus 941 G~valvla~ia~~~ 954 (1158)
=++++.+...+++.
T Consensus 339 FTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 339 FTMSLFIAGLAFDD 352 (378)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCC
Confidence 36667777777765
No 33
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.6e-05 Score=89.14 Aligned_cols=265 Identities=19% Similarity=0.228 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHhc---hhhH---HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH
Q 001096 653 TKAIAEFGVVFLLFNIGLELSVERLSSM---KKYV---FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST 726 (1158)
Q Consensus 653 l~~LaeLGLi~LLF~aGLelDl~~Lrr~---~k~i---l~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~ 726 (1158)
...+-+--+.++.+.+|+|+..+.+... +++. ..-++.|+++|.+ ++++++.+-+...===++-.+|++
T Consensus 63 ~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n~~~p~~~~GWaIP~ATDi 137 (390)
T COG3004 63 LLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALNAGDPATLEGWAIPMATDI 137 (390)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----HhheeecCChhhhcCcCcccHHHH
Confidence 3455565667788889999988877632 2222 2234555555543 233332221111000022345777
Q ss_pred HHHHHHHHhcCC-CCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001096 727 AVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGR 805 (1158)
Q Consensus 727 aVVv~iL~el~l-l~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i~~~L~l~~l~iil~ivl~~lig~ 805 (1158)
+.+..++.=+|- .++.+--.+++-+++||+.++++.++.. .+ +..+. .++ +.++++.++
T Consensus 138 AFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFY---t~----~Ls~~----al~------~a~~~i~vL--- 197 (390)
T COG3004 138 AFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFY---TT----DLSMA----ALG------IAALAIAVL--- 197 (390)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhh---cC----CccHH----HHH------HHHHHHHHH---
Confidence 776666654432 3555566778889999999988776542 11 11211 111 111111111
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhccc-----chhHHHHHhHHhHHH-HHHH
Q 001096 806 LLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET-----EFSLQVESDIAPYRG-LLLG 879 (1158)
Q Consensus 806 ~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~-----~~~~~l~e~l~~~~~-~flP 879 (1158)
. .+++..-+ .-..| +++....+..-..-|+|..++..+.|+++|-. ..-+++++.+.|... +.+|
T Consensus 198 ~----~lN~~~v~-~l~~Y----~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlP 268 (390)
T COG3004 198 A----VLNRLGVR-RLSPY----LLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILP 268 (390)
T ss_pred H----HHHHhCch-hhhHH----HHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHH
Confidence 1 12222111 11112 23333344445678999999999999999942 234678888888754 5588
Q ss_pred HH-HHHHhcccC---hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhHHHHhhhccccc-hhh
Q 001096 880 LF-FMTVGMSID---PKLLLSNFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGG-EFA 944 (1158)
Q Consensus 880 lF-FvliGm~id---l~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~----------g~~~real~lgL~La~rG-~va 944 (1158)
+| |.-.|.++. ...+.+ ++.+.++...+++|.++++..++.. +.+|++-..+++. +..| +++
T Consensus 269 lFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iL-cGIGFTMS 345 (390)
T COG3004 269 LFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSIL-CGIGFTMS 345 (390)
T ss_pred HHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHH-HhhhHHHH
Confidence 88 778888765 444433 3345666777899999988877652 4567776666554 4444 556
Q ss_pred HHHHHHHHhh
Q 001096 945 FVAFGEAVNQ 954 (1158)
Q Consensus 945 lvla~ia~~~ 954 (1158)
+.+...++..
T Consensus 346 lFI~~LAf~~ 355 (390)
T COG3004 346 LFIASLAFGS 355 (390)
T ss_pred HHHHHHhcCC
Confidence 6666666544
No 34
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.24 E-value=0.00018 Score=81.75 Aligned_cols=278 Identities=19% Similarity=0.176 Sum_probs=145.7
Q ss_pred HHHHHHHHhhcccccccccCc-hhHHHH---HHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001096 630 LGYLAAGILIGPYGLSIIRHV-HGTKAI---AEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHF 705 (1158)
Q Consensus 630 VG~ILaGILLGP~gLgli~~~-~~l~~L---aeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~ 705 (1158)
+--++.|.++.-...+..+-- .....+ +.--+.+++|-.|-++|++......++...+.+.-+++.+ +++++...
T Consensus 16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~-~~g~~~~~ 94 (312)
T PRK12460 16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAI-VIGLLVGK 94 (312)
T ss_pred HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHH-HHHHHHHH
Confidence 445667777763332322111 111222 1234567889999999998876666655555555555544 45666655
Q ss_pred HhCCC---hHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCCCcHHHH
Q 001096 706 VSGLP---GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAI 782 (1158)
Q Consensus 706 llGls---~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~~~~~~i 782 (1158)
++|.+ ....+.+-++++.|..+.=..+..|+|- +++.|-. .++++- .| .+
T Consensus 95 ~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~-~~d~gA~-------------~~~sl~--------~G--Pf--- 147 (312)
T PRK12460 95 FFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGD-ERDVGAI-------------SILSLN--------DG--PF--- 147 (312)
T ss_pred HcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCC-HhhhhHH-------------hhhhhc--------cC--cH---
Confidence 66643 2344444445555555666666666654 2222211 111110 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHhhccc
Q 001096 783 AEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTAR--AGLSMALGAFLAGLLLAET 860 (1158)
Q Consensus 783 ~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~--lGls~vLGAFvAGLiL~n~ 860 (1158)
++ .++++.+++++. ..+-+++=+++.|++++|.
T Consensus 148 -----------------------------------------~t----m~aLga~gLA~ip~~~lv~lilpILiGmilGNl 182 (312)
T PRK12460 148 -----------------------------------------FT----MLALGAAGLANIPIMALVAALLPLVLGMILGNL 182 (312)
T ss_pred -----------------------------------------HH----HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Confidence 00 111111222211 0112245577888899884
Q ss_pred chhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHh--hhcc
Q 001096 861 EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTG--LLLA 938 (1158)
Q Consensus 861 ~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lg--L~La 938 (1158)
. +.+.+.+.+-..+.+|+|-+..|+++|+..+.......+++.++.++.-++..+...+++|.+.+.++.+| .+-+
T Consensus 183 d--~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnA 260 (312)
T PRK12460 183 D--PDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNA 260 (312)
T ss_pred c--hhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHH
Confidence 3 23445555655678999999999999999997753333343344444455566666688888887777666 3222
Q ss_pred ccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 001096 939 PGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQ 984 (1158)
Q Consensus 939 ~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~~~ 984 (1158)
.-|.- .+.+... .....-+.....+...+++|.+++|++..|..
T Consensus 261 IcgpA-AVaAadP-~~~~~~~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 261 VATPL-AIAAADP-SLAPVAAAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred HHHHH-HHHHhch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1111111 11111222223344567889999999987654
No 35
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.07 E-value=0.0047 Score=73.02 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 001096 848 LGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSV 927 (1158)
Q Consensus 848 LGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~ 927 (1158)
+-....|++..-.+..+.+ .--..+..+++-+||..+|+..|+..+.. .+..+++.++.+..-.+..+..++++|++.
T Consensus 244 l~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l 321 (378)
T PF05684_consen 244 LTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLFKIDL 321 (378)
T ss_pred HHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 3344455555544443332 33345667889999999999999999988 444555556667778888999999999998
Q ss_pred hhHHHHhhhccccchhhHHHHHHHHh
Q 001096 928 ISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1158)
Q Consensus 928 real~lgL~La~rG~valvla~ia~~ 953 (1158)
.+....+. -|..|.........+.+
T Consensus 322 ~~~~vAS~-AnIGGpaTA~a~A~a~~ 346 (378)
T PF05684_consen 322 FELLVASN-ANIGGPATAPAVAAAKG 346 (378)
T ss_pred HHHHHHhh-cccCCcchHHHHHHhcC
Confidence 76554443 34444443333333333
No 36
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.07 E-value=0.00046 Score=78.10 Aligned_cols=280 Identities=17% Similarity=0.140 Sum_probs=143.2
Q ss_pred HHHHHHHHHhhccccccccc---C-chhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 001096 629 VLGYLAAGILIGPYGLSIIR---H-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1158)
Q Consensus 629 VVG~ILaGILLGP~gLgli~---~-~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~ 704 (1158)
++.-++.|.++.-...+..+ . ...+-.=+..-+.+++|-.|-++|++...+..|+...+-+.-+++.+ +++++..
T Consensus 15 mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~-~lgl~~~ 93 (314)
T PF03812_consen 15 MVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGA-LLGLLVG 93 (314)
T ss_pred eHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHH-HHHHHHH
Confidence 45556667766633323222 1 11111112344567889999999999998888877777677666655 5677776
Q ss_pred HHhCCCh--------HHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCCC
Q 001096 705 FVSGLPG--------PASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGG 776 (1158)
Q Consensus 705 ~llGls~--------~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~s~g~ 776 (1158)
.++|... ..++.+-++++.+..++=+.+..|+|- +++.|-. +...++|.-.+.+
T Consensus 94 ~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~gA~--~i~sl~~GPf~tM--------------- 155 (314)
T PF03812_consen 94 KFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVGAF--SILSLNDGPFFTM--------------- 155 (314)
T ss_pred HHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhHHH--HHHHhhhhHHHHH---------------
Confidence 6776542 345555556666777777777777764 2222111 1111111111100
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH--HhCchHHHHHHHHH
Q 001096 777 VGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA--RAGLSMALGAFLAG 854 (1158)
Q Consensus 777 ~~~~~i~~~L~l~~l~iil~ivl~~lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae--~lGls~vLGAFvAG 854 (1158)
++++.+.+++ ..-+=+.+=+++.|
T Consensus 156 ------------------------------------------------------l~LG~sG~a~ip~~~lv~~llP~iiG 181 (314)
T PF03812_consen 156 ------------------------------------------------------LALGASGLANIPWMSLVAALLPIIIG 181 (314)
T ss_pred ------------------------------------------------------HHHhhccccCCCHHHHHHHHHHHHHH
Confidence 0111111110 00001224477889
Q ss_pred HhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCChhhHHHH
Q 001096 855 LLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL-FGVSVISAIRT 933 (1158)
Q Consensus 855 LiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~-~g~~~real~l 933 (1158)
++++|.+ +++.+.+.+-..+++|+|-..+|..+|+..+...-...+++-++.++.-....++.-++ .|-+..-.+..
T Consensus 182 ~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~~g~aG~A~ 259 (314)
T PF03812_consen 182 MILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKGNGVAGAAI 259 (314)
T ss_pred HHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCCCCceeehH
Confidence 9999864 35566667777899999999999999999987742222222222222222334444444 23332222211
Q ss_pred hhh-ccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 001096 934 GLL-LAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQ 984 (1158)
Q Consensus 934 gL~-La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~~~ 984 (1158)
+-. -+....- .+++...-+....-+.....+...+++|.+++|++..|+.
T Consensus 260 sstAGnavatP-aaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 260 SSTAGNAVATP-AAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred Hhhhhhhhhhh-HHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 0111111 1111111111111222233445567889999999987654
No 37
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.84 E-value=0.015 Score=69.17 Aligned_cols=107 Identities=17% Similarity=0.056 Sum_probs=67.9
Q ss_pred hCchHHHHHHHHHHhhccc-c---hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHH-HHHH
Q 001096 842 AGLSMALGAFLAGLLLAET-E---FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGK-TILV 916 (1158)
Q Consensus 842 lGls~vLGAFvAGLiL~n~-~---~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K-~l~v 916 (1158)
+.++..+++++.|+++.|. + ..+-..+.++.+.++.+-+|-+..=|++++..+.+.+..+++++++-++.- +...
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999984 1 222233455667788888888888899999999887654444444433333 3555
Q ss_pred HHHHHhcCCChhhHHHHhhhcc--ccchhhHHHHH
Q 001096 917 ALVGRLFGVSVISAIRTGLLLA--PGGEFAFVAFG 949 (1158)
Q Consensus 917 ~l~~~~~g~~~real~lgL~La--~rG~valvla~ 949 (1158)
|+..+.+|-+ .|+..++.+.+ ..|...-.++.
T Consensus 323 fv~fr~mg~~-ydaaV~~ag~~G~~lGatptaian 356 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIAN 356 (398)
T ss_pred HHhHHhccch-HHHHHHhcccccccccchHHHHHH
Confidence 6667777766 66655433332 33444444443
No 38
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.79 E-value=0.018 Score=67.88 Aligned_cols=93 Identities=17% Similarity=0.112 Sum_probs=58.3
Q ss_pred hCchHHHHHHHHHHhhcccc----hhHHHH-HhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHH-HHHHHHHHHHHH
Q 001096 842 AGLSMALGAFLAGLLLAETE----FSLQVE-SDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITG-ALGLLIGGKTIL 915 (1158)
Q Consensus 842 lGls~vLGAFvAGLiL~n~~----~~~~l~-e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vll-llvl~ll~K~l~ 915 (1158)
+.++..+++++.|+++.|.- ..+ +. +.++.+.++.+-+|-+..=|++++..+.+.+..+++ +++-.++.-+..
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~-id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYK-IDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCccc-CCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999841 112 22 234455677777776777778999998876433333 333333344455
Q ss_pred HHHHHHhcCCChhhHHHHhhh
Q 001096 916 VALVGRLFGVSVISAIRTGLL 936 (1158)
Q Consensus 916 v~l~~~~~g~~~real~lgL~ 936 (1158)
.++..+.+|-++ |+..++.+
T Consensus 324 ~fv~fr~~gkdy-daavm~~G 343 (368)
T PF03616_consen 324 YFVTFRVMGKDY-DAAVMSAG 343 (368)
T ss_pred HHHhhhhhCCCh-hHHHHhhh
Confidence 666777888775 55554433
No 39
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.59 E-value=0.0099 Score=69.27 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=65.0
Q ss_pred HHHHHHhC-----chHHHHHHHHHHhhccc----chhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhh-hhHHHHH
Q 001096 836 SLLTARAG-----LSMALGAFLAGLLLAET----EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNF-PVITGAL 905 (1158)
Q Consensus 836 a~lae~lG-----ls~vLGAFvAGLiL~n~----~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~-~~vllll 905 (1158)
+++.+.++ ++..+++++.|+++.|. ...+-..+.++.+.++-+.+|-.+.=|++.+..+.+-+ +++++++
T Consensus 235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL~ 314 (404)
T COG0786 235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVILA 314 (404)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34555554 67889999999999985 12223344566677888888888888899998887643 3333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHH
Q 001096 906 GLLIGGKTILVALVGRLFGVSVISAIR 932 (1158)
Q Consensus 906 vl~ll~K~l~v~l~~~~~g~~~real~ 932 (1158)
+-.++.-+...++..+.+|-++..+..
T Consensus 315 vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 315 VQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 334445566677778888877655544
No 40
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.55 E-value=0.077 Score=61.83 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=70.1
Q ss_pred CCCchHHHHHHHHHhhccccc-ccccC-chhH----HHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHH
Q 001096 624 PGGSPVLGYLAAGILIGPYGL-SIIRH-VHGT----KAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1158)
Q Consensus 624 ~glP~VVG~ILaGILLGP~gL-gli~~-~~~l----~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~i 697 (1158)
+++++++--++.|+++|+... +..+. ...+ +.+..+|+++ .|.++++.++...+...+.+.+..+..+++
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~ 104 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTFF 104 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 378889888999999998532 22111 1222 4566666655 588999999999998887776666665554
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccccCcHHHHHH
Q 001096 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ 731 (1158)
Q Consensus 698 ivglll~~llGls~~~AlllGaiLs~TS~aVVv~ 731 (1158)
...++..-.+|++...++++|+..+....+.++.
T Consensus 105 ~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 3334443568999999999987766655544433
No 41
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.55 E-value=0.021 Score=65.75 Aligned_cols=107 Identities=20% Similarity=0.320 Sum_probs=74.9
Q ss_pred cCCCchHHHHHHHHHhhcccccccccCc-hh----HHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHH
Q 001096 623 IPGGSPVLGYLAAGILIGPYGLSIIRHV-HG----TKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1158)
Q Consensus 623 l~glP~VVG~ILaGILLGP~gLgli~~~-~~----l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~i 697 (1158)
.+.+++++--|+.|+++|+..++..+.. .. .+.+..+|+++ .|.++++.++.+.+...+...++.++++++
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4478888999999999997334433221 11 24666666655 588999999999999887777777777665
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHH
Q 001096 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVL 733 (1158)
Q Consensus 698 ivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL 733 (1158)
...++...+++++...+.++|+-.+......+..+-
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 333343378899999999999887776665444443
No 42
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.47 E-value=0.00017 Score=75.04 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=66.3
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
..+++|+|.|++|.+.++.|.+.|.+|++|++ +..+.+.+.+. +. .+.+.+++.++++++.|+++|+|++.|.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp--~~~~~l~~l~~--i~---~~~~~~~~~dl~~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP--EICKEMKELPY--IT---WKQKTFSNDDIKDAHLIYAATNQHAVNM 85 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC--ccCHHHHhccC--cE---EEecccChhcCCCceEEEECCCCHHHHH
Confidence 35699999999999999999999999999964 44444444331 11 2456778889999999999999999999
Q ss_pred HHHHHHHhh
Q 001096 1089 RTVWALSKY 1097 (1158)
Q Consensus 1089 ~i~l~ar~l 1097 (1158)
.++..+++.
T Consensus 86 ~i~~~a~~~ 94 (157)
T PRK06719 86 MVKQAAHDF 94 (157)
T ss_pred HHHHHHHHC
Confidence 999999875
No 43
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.43 E-value=0.0042 Score=70.20 Aligned_cols=134 Identities=14% Similarity=0.054 Sum_probs=69.8
Q ss_pred HHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCC
Q 001096 848 LGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF-GVS 926 (1158)
Q Consensus 848 LGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~-g~~ 926 (1158)
+-+++.|++++|-+ +++.+.+.+-...++|+|-..+|..+|+..+...-...+++-++.++.-....++.-++. |-+
T Consensus 175 ilPlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~~ 252 (314)
T TIGR00793 175 VLPFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGGD 252 (314)
T ss_pred HHHHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence 44778899999854 245556666677899999999999999988866421122222222233334455555555 322
Q ss_pred hhhHHHHhhh-ccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 001096 927 VISAIRTGLL-LAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQ 984 (1158)
Q Consensus 927 ~real~lgL~-La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~~~ 984 (1158)
..-.+..+-. -+....-+ +++...-+....-+.....+..++++|.+++|++..|..
T Consensus 253 g~aG~A~sstAGnAvatPa-avA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~ 310 (314)
T TIGR00793 253 GTAGIAASSSAGAAVATPV-LIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWS 310 (314)
T ss_pred CchhhHHHHHHHHhhhhHH-HHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 01111111 111110111111122222344467789999999987654
No 44
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.40 E-value=0.47 Score=55.38 Aligned_cols=74 Identities=28% Similarity=0.337 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc--hHHH-HHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHh
Q 001096 603 LFDVLWLLLASVIFVPIFQKIPGGS--PVLG-YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1158)
Q Consensus 603 Ll~i~lLLl~a~ilg~Ll~Rl~glP--~VVG-~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr 679 (1158)
..+.+++++++..++.++..+ ++| .++| -+++|++.+-.+.. ....+.+..+|...+--.+|..+..+.+..
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~-~vPa~~mlG~~l~a~~v~~~~~~~----l~~P~~l~~~~q~ilG~~ig~~~t~s~l~~ 82 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLL-HVPAAWMLGAPLLAGIVAGLRGLT----LPLPRGLFKAGQVILGIMIGASLTPSVLDT 82 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhcccc----ccCChHHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 467788888899999999988 776 4567 77888888743322 234578888999999999999999887764
Q ss_pred ch
Q 001096 680 MK 681 (1158)
Q Consensus 680 ~~ 681 (1158)
..
T Consensus 83 l~ 84 (352)
T COG3180 83 LK 84 (352)
T ss_pred HH
Confidence 43
No 45
>COG2855 Predicted membrane protein [Function unknown]
Probab=97.31 E-value=0.21 Score=57.71 Aligned_cols=120 Identities=15% Similarity=0.229 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHhhcccccccccC----chhHHHHHHHHHHHHHHHHHhcCChhHHHhc
Q 001096 607 LWLLLASVIFVPIFQ--KIPGGSPVLGYLAAGILIGPYGLSIIRH----VHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1158)
Q Consensus 607 ~lLLl~a~ilg~Ll~--Rl~glP~VVG~ILaGILLGP~gLgli~~----~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~ 680 (1158)
+++..+++.++.... .. ++|..+--|+.||++|...-...+. ...-..+..+|++++ |.++++..+...
T Consensus 17 ~~ia~~a~~l~~~~~~~~~-~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLl----G~~ltl~~i~~~ 91 (334)
T COG2855 17 ALIAGLAMLLGAFFFSIHL-GLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLL----GFRLTLSDIADV 91 (334)
T ss_pred HHHHHHHHHHhchHHhhhc-CchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHH----cceeeHHHHHHc
Confidence 333344444443333 34 6889999999999999432111111 122357777777664 789999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHH
Q 001096 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQV 732 (1158)
Q Consensus 681 ~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~i 732 (1158)
+...+.+....+..++ ++++++.-++|+++..++++|+..+...-+.++.+
T Consensus 92 G~~~v~~~~~~l~~t~-~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~ 142 (334)
T COG2855 92 GGSGVLIIAITLSSTF-LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAAT 142 (334)
T ss_pred CccHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHh
Confidence 9887776666555554 45555555899999999999988777666544443
No 46
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.09 E-value=0.56 Score=54.36 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHhchhh---HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHH-
Q 001096 653 TKAIAEFGVVFLLFNIGLELSVERLSSMKKY---VFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV- 728 (1158)
Q Consensus 653 l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~---il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aV- 728 (1158)
.+....+++..++|..|+.++.+++++..+. .+..-...+++.. .+++.+..+++......+..|..+...-|..
T Consensus 29 ~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P-ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv 107 (313)
T PF13593_consen 29 PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP-LLGFGLSRLFPAFLPPELALGLLILACLPTTV 107 (313)
T ss_pred hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH-HHHHHHHHHhhccCCHHHHHHHHHHhhCCchh
Confidence 3577788899999999999999999865443 2222122222222 2344444444322233355554433333322
Q ss_pred HHH-HHHhcCCCCchhhHHHHHHHhhhhhHHHHHH
Q 001096 729 VLQ-VLQERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1158)
Q Consensus 729 Vv~-iL~el~ll~s~~GrlaLs~sllnDi~aIvll 762 (1158)
... ++...--.|. ..++..+.+..++++++.
T Consensus 108 ~S~v~~T~~AgGN~---a~Al~~~~~snllgv~lt 139 (313)
T PF13593_consen 108 SSSVVLTRLAGGNV---ALALFNAVLSNLLGVFLT 139 (313)
T ss_pred hHHHHHHHHcCCCH---HHHHHHHHHHhhhhHhHH
Confidence 222 2222221122 344555777777777776
No 47
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.97 E-value=0.27 Score=56.79 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHH
Q 001096 652 GTKAIAEFGVVFLLFNIGLELSVERLSSMKK---YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV 728 (1158)
Q Consensus 652 ~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k---~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aV 728 (1158)
++.....+++.++||..|+.+..+++++..+ ..+.....++++.. .+++.+.+++.+ +..+..|.++..+.|+-
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP-lla~~~~~~~~l--~~~l~~Gl~ll~~~Pgg 111 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP-LLALLLAKLFPL--PPELAVGLLLLGCCPGG 111 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHHHHHHcCC--CHHHHHhHHheeeCCCc
Confidence 3344568899999999999999999886543 33333333333322 355555555554 44555555555444432
Q ss_pred HHH-HHHhcCCCCchhhHHHHH--HHhhhhhHHHHHH
Q 001096 729 VLQ-VLQERGESTSRHGRATFS--VLLFQDLAVVVLL 762 (1158)
Q Consensus 729 Vv~-iL~el~ll~s~~GrlaLs--~sllnDi~aIvll 762 (1158)
+.. ++.-+- .|..+++ .+.++.++++++.
T Consensus 112 v~S~~~t~lA-----kGnValsV~~tsvStll~~f~t 143 (319)
T COG0385 112 VASNAMTYLA-----KGNVALSVCSTSVSTLLGPFLT 143 (319)
T ss_pred hhHHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHH
Confidence 222 222221 2334433 3556666666554
No 48
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.72 E-value=1.2 Score=51.85 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhCc--hHHHHHHHHHHhhcccch-hHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhh---hhhHH
Q 001096 829 LLVILGTSLLTARAGL--SMALGAFLAGLLLAETEF-SLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN---FPVIT 902 (1158)
Q Consensus 829 L~v~l~~a~lae~lGl--s~vLGAFvAGLiL~n~~~-~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~---~~~vl 902 (1158)
+.+++..++++..+++ ..++|+++.+.++.-... ...+- ..+..+..-+.=.++|.+++...+... ++..+
T Consensus 161 ~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P---~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l 237 (318)
T PF05145_consen 161 ALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLP---PWLVNAAQVLIGASIGSRFTRETLRELRRLLPPAL 237 (318)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 3445555566666665 356777777666653210 00000 112233333444568888887776553 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhh
Q 001096 903 GALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1158)
Q Consensus 903 lllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~ 982 (1158)
+..++.++.-.+..++..+++++++.+.+. .++|.|.-+..+.....+.+.- -+...=++-+++-.++.|++.++
T Consensus 238 ~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~--~V~~~q~~Rl~~v~~~~p~~~r~ 312 (318)
T PF05145_consen 238 LSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVA--FVAAHQVVRLLFVLLLAPFIARW 312 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677788888899999877663 4689998887776655544311 11111112233334456777665
Q ss_pred h
Q 001096 983 G 983 (1158)
Q Consensus 983 ~ 983 (1158)
.
T Consensus 313 ~ 313 (318)
T PF05145_consen 313 L 313 (318)
T ss_pred H
Confidence 4
No 49
>PRK11281 hypothetical protein; Provisional
Probab=96.68 E-value=4.5 Score=54.31 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 001096 224 TMALSLAEARLQVAIESLQD 243 (1158)
Q Consensus 224 ~~~~~~a~~~~~~~~~~~~~ 243 (1158)
...++-|..|+|.+...+.+
T Consensus 162 Q~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33556666677777665554
No 50
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.67 E-value=0.0031 Score=68.30 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=63.4
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCch-HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~-~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.++++|+|.|++|...++.|.+.|.+|++|+++.. ....+.+.+. +.+ .+..++..++.+++.||++|+|++.|
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~-i~~----~~~~~~~~~l~~adlViaaT~d~elN 84 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGK-IRW----KQKEFEPSDIVDAFLVIAATNDPRVN 84 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCC-EEE----EecCCChhhcCCceEEEEcCCCHHHH
Confidence 35799999999999999999999999999987653 3333433332 211 12345567788999999999999999
Q ss_pred HHHHHHHHh
Q 001096 1088 YRTVWALSK 1096 (1158)
Q Consensus 1088 l~i~l~ar~ 1096 (1158)
..+...+++
T Consensus 85 ~~i~~~a~~ 93 (202)
T PRK06718 85 EQVKEDLPE 93 (202)
T ss_pred HHHHHHHHh
Confidence 999888854
No 51
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.62 E-value=1.9 Score=49.32 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCChhHHHhchh--hHHHHHHH-HHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-HHHHHHHH
Q 001096 659 FGVVFLLFNIGLELSVERLSSMKK--YVFGLGSA-QVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-AVVLQVLQ 734 (1158)
Q Consensus 659 LGLi~LLF~aGLelDl~~Lrr~~k--~il~Lai~-gvllt~iivglll~~llGls~~~AlllGaiLs~TS~-aVVv~iL~ 734 (1158)
..+.++||..|+.++++++++..+ +....++. .+++.. .+++.+..+++.+.. ...|.++..+.| +....++.
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~P-lla~~l~~~~~l~~~--~~~glvL~~~~P~~~~s~v~t 88 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMP-LTGFLLAKVFKLPPE--LAVGVLIVGCCPGGTASNVFT 88 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHH-HHHHHHHHHhCCCHH--HHHHHHheeeCCCchHHHHHH
Confidence 348889999999999999988665 23333333 343333 234444456676543 333333333333 34444554
Q ss_pred hcCCCCchhhHHHHHHHhhhhhHHHHHH
Q 001096 735 ERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1158)
Q Consensus 735 el~ll~s~~GrlaLs~sllnDi~aIvll 762 (1158)
..--.+.+ +..+...++-+.+++..
T Consensus 89 ~~~~gn~~---la~~~~~~stlls~vt~ 113 (286)
T TIGR00841 89 YLLKGDMA---LSISMTTCSTLLALGMM 113 (286)
T ss_pred HHhCCCHh---hhhHHHHHHHHHHHHHH
Confidence 44332333 33333444444444444
No 52
>PRK04148 hypothetical protein; Provisional
Probab=96.55 E-value=0.0088 Score=60.73 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=76.9
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
.+++.+|.| +|..++..|.+.|++|+.+|.|++.++.+++.+.+++.+|..+++.=.- ++|+.+...-+-++.--.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y---~~a~liysirpp~el~~~ 93 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIY---KNAKLIYSIRPPRDLQPF 93 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHH---hcCCEEEEeCCCHHHHHH
Confidence 468999999 9999999999999999999999999999999999999999998875433 257888777777766666
Q ss_pred HHHHHHhhCCCceEEEEe
Q 001096 1090 TVWALSKYFPNVKTFVRA 1107 (1158)
Q Consensus 1090 i~l~ar~l~p~~~IIara 1107 (1158)
+...+++.+.++.|.--.
T Consensus 94 ~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 94 ILELAKKINVPLIIKPLS 111 (134)
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 777788887665444333
No 53
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.54 E-value=0.065 Score=67.54 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHH
Q 001096 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV 692 (1158)
Q Consensus 613 a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gv 692 (1158)
....+.+...+ |+++++|-.++|++++.+-... .-...++.+..+.+.+++..+|+.+|+..+...+..++.+.++.+
T Consensus 228 v~~~a~la~~~-Gls~~lGAFlAGl~l~~~~~~~-~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~ 305 (621)
T PRK03562 228 VFGFGLLMEEV-GLSMALGAFLAGVLLASSEYRH-ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFL 305 (621)
T ss_pred HHHHHHHHHHh-CccHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 34445566677 8889999999999988532110 012335566778888888889999999988765544433333222
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-H-HHHHHHHhcCCCCchhhH
Q 001096 693 LVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-A-VVLQVLQERGESTSRHGR 745 (1158)
Q Consensus 693 llt~iivglll~~llGls~~~AlllGaiLs~TS~-a-VVv~iL~el~ll~s~~Gr 745 (1158)
+.= ++..++...++|+++..++.+|+.++.-+. + ++..+-.+.+.++.+...
T Consensus 306 ~~K-~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~ 359 (621)
T PRK03562 306 AIK-IAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAK 359 (621)
T ss_pred HHH-HHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHH
Confidence 222 234445556789999999999998875444 2 344455666665554433
No 54
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.50 E-value=2.6 Score=49.45 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHhhcccccccccCch--hH------HHHHHHHHHHHHH
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKIPG------GSPVLGYLAAGILIGPYGLSIIRHVH--GT------KAIAEFGVVFLLF 666 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl~g------lP~VVG~ILaGILLGP~gLgli~~~~--~l------~~LaeLGLi~LLF 666 (1158)
+.+-.++++++++.+++.+=+|+|- -|+++..+.+-.+.- .|++++.. .. .-+.++.++-+.-
T Consensus 46 ~mlg~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~---~~llp~~~i~avt~fm~~snFL~fyIA~LI~ 122 (438)
T COG3493 46 DMLGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVF---YNLLPSNVIKAVTNFMGKSNFLDFYIAALIV 122 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHH---hccCCHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4445667777788888888877643 355555444433322 23333211 11 1333344444443
Q ss_pred HHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh--------ccccCcHHHHHHHHHhcCC
Q 001096 667 NIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGN--------GLALSSTAVVLQVLQERGE 738 (1158)
Q Consensus 667 ~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGa--------iLs~TS~aVVv~iL~el~l 738 (1158)
-.=+.+|.+.|-+...+.+...+.+++.. .++|.+...++|.++...++.-. --.......++.-+ .+.
T Consensus 123 GSILgmnRklLIk~~~~~i~~il~g~v~A-~~~g~lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~i--tg~ 199 (438)
T COG3493 123 GSILGMNRKLLIKSLKRYIPPILAGMVGA-AAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSSI--TGG 199 (438)
T ss_pred hhhhhccHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHHH--cCC
Confidence 34458888888888777776666666544 35777778889998876654311 11122222333332 233
Q ss_pred CCchhhHHHHHHHhhhhhHHHHHHHHHHHHh
Q 001096 739 STSRHGRATFSVLLFQDLAVVVLLILIPLIS 769 (1158)
Q Consensus 739 l~s~~GrlaLs~sllnDi~aIvll~ll~~la 769 (1158)
....+-..+..+..+..+++|+..+++-.+.
T Consensus 200 s~~~~~s~lipal~igNvfAIi~aall~~iG 230 (438)
T COG3493 200 SQEEYFSQLIPALTIGNVFAIICAALLNKIG 230 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555666777888888888877775553
No 55
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.46 E-value=0.086 Score=66.19 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHH
Q 001096 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV 692 (1158)
Q Consensus 613 a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gv 692 (1158)
....+.+...+ |+++++|-.++|++++.+-... .-...++.+..+.+.+++...|+.+|+..+...+..++.+.++.+
T Consensus 225 vl~~a~l~~~~-Gls~~LGAFlaGl~l~~s~~~~-~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l 302 (601)
T PRK03659 225 VLGSALFMDAL-GLSMALGTFIAGVLLAESEYRH-ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLV 302 (601)
T ss_pred HHHHHHHHHHh-CccHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHH
Confidence 33444566677 9999999999999998632110 012245667788888999999999999988776554433332222
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-H-HHHHHHHhcCCCCch
Q 001096 693 LVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-A-VVLQVLQERGESTSR 742 (1158)
Q Consensus 693 llt~iivglll~~llGls~~~AlllGaiLs~TS~-a-VVv~iL~el~ll~s~ 742 (1158)
++= ++..++...++|+++..++.+|+.++..+. + ++..+-.+.+.++..
T Consensus 303 ~~K-~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~ 353 (601)
T PRK03659 303 AVK-GLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGD 353 (601)
T ss_pred HHH-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHH
Confidence 221 233445556789999999999988776554 2 334444555555443
No 56
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.32 E-value=2.7 Score=48.88 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhhcccccc---ccc--CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhh---HHHHHHHHHHHHHHHH
Q 001096 628 PVLGYLAAGILIGPYGLS---IIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY---VFGLGSAQVLVTAVVV 699 (1158)
Q Consensus 628 ~VVG~ILaGILLGP~gLg---li~--~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~---il~Lai~gvllt~iiv 699 (1158)
-+...+++|+.+|-+..+ .+. +...++.-..+++.+.|+=.=.++|++++++..+. ....-....++..+..
T Consensus 19 wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm 98 (342)
T COG0798 19 WVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLM 98 (342)
T ss_pred HHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 355667777777744333 222 23345666778888888888889999999976653 2222233333333333
Q ss_pred HHHHHHHhCCChHHHHHHhhccccCcHHHHHH-HHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 001096 700 GLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ-VLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1158)
Q Consensus 700 glll~~llGls~~~AlllGaiLs~TS~aVVv~-iL~el~ll~s~~GrlaLs~sllnDi~aIvll~ll~~l 768 (1158)
..+++++++..+ .+..|.++..-.|-+.+. +-.++-..+. ..++..-.+||++.++++..+..+
T Consensus 99 ~~la~~fl~~~p--ey~~GlILlglApC~aMVivw~~La~Gd~---~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 99 FALAWFFLPDEP--EYRAGLILLGLAPCIAMVIVWSGLAKGDR---ELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHHhCCCH--HHHHHHHHHHhhhhHHHHHHHHhhccCcH---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444554433 444454444333322222 2234332222 445556678999998888554433
No 57
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.28 E-value=0.013 Score=63.49 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=74.8
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-CCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.+++|+|+|++|+.+++.|.+.|.+|++.|.+++..+.+.+. |...+ |. .+ +...++|.++-+... |.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~--~~----l~~~~~Dv~vp~A~~---~~ 97 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV--AP--EE----IYSVDADVFAPCALG---GV 97 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc--hh----hccccCCEEEecccc---cc
Confidence 469999999999999999999999999999999988777554 53333 22 22 222368888744433 23
Q ss_pred HHHHHHHhhCCCceEEEEecC----hhhHHHHHHCCCCe
Q 001096 1089 RTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATA 1123 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~d----~e~~~~L~~aGAd~ 1123 (1158)
.....++++..+ .|+..+|+ ++..+.|++-|+..
T Consensus 98 I~~~~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~ 135 (200)
T cd01075 98 INDDTIPQLKAK-AIAGAANNQLADPRHGQMLHERGILY 135 (200)
T ss_pred cCHHHHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCEE
Confidence 444456666654 77888888 89999999999865
No 58
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.25 E-value=0.022 Score=64.51 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=74.9
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCC----HHHHHhcCccccCEEEEecCCchh
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS----REVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd----~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
++.|+|.|.+|..++..|.+.|++|+++++++++.+.+++.|..+-.|+... ...... ++.+|.|++++.....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~~~~ 79 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKAYQL 79 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH--cCCCCEEEEecccccH
Confidence 4789999999999999999999999999999888888877776541222110 011222 3789999999998765
Q ss_pred hHHHHHHHHhhCCCceEEEEecChhhHHHHHH
Q 001096 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~ 1118 (1158)
.-.+......+.++..|+...+-....+.+.+
T Consensus 80 ~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 80 PAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred HHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 55444444445666677777776665555554
No 59
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.24 E-value=0.1 Score=60.19 Aligned_cols=154 Identities=20% Similarity=0.183 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHH----HhCchHHHHHHHHHHhhcc-c-chhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHH
Q 001096 829 LLVILGTSLLTA----RAGLSMALGAFLAGLLLAE-T-EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIT 902 (1158)
Q Consensus 829 L~v~l~~a~lae----~lGls~vLGAFvAGLiL~n-~-~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vl 902 (1158)
+++....+++++ ..++++.+=|.+.|++++| . ...+....-++.....++.+=-++.|.++++..+...-+..+
T Consensus 7 ~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~ 86 (305)
T PF03601_consen 7 FAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGL 86 (305)
T ss_pred HHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHH
Confidence 344444455554 4688899999999999998 4 334444444444456777888888999999999877433223
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhh-H--HHHHHHHHHHHHhHHH
Q 001096 903 GALGLLIGGKTILVALVG-RLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQL-S--SLLFLLVGISMALTPW 978 (1158)
Q Consensus 903 lllvl~ll~K~l~v~l~~-~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~el-f--siLvlvVVlS~IitPl 978 (1158)
+..++.+..-+...+..+ +++|++++.+..++.+.+--|.-+++...-....+ +++. + ..+++.-++.+++-|+
T Consensus 87 ~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~ 164 (305)
T PF03601_consen 87 LIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHH
Confidence 333333333444444444 99999999999999988777766555544333222 1222 1 2333334456777888
Q ss_pred HHhhhh
Q 001096 979 LAAGGQ 984 (1158)
Q Consensus 979 L~~~~~ 984 (1158)
+.++..
T Consensus 165 l~~~l~ 170 (305)
T PF03601_consen 165 LGHALG 170 (305)
T ss_pred HHHHhC
Confidence 877654
No 60
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.19 E-value=8.1 Score=51.86 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=7.9
Q ss_pred HHHHHhhhHHHHHHHHH
Q 001096 290 ELRRLQSKKEELQKEVD 306 (1158)
Q Consensus 290 ~l~~~~~~~~~~q~~~~ 306 (1158)
++.++|.+.+.||+.++
T Consensus 216 ~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 216 RSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444445554443
No 61
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.16 E-value=0.17 Score=58.94 Aligned_cols=134 Identities=17% Similarity=0.185 Sum_probs=69.8
Q ss_pred HHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 001096 849 GAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLFGVSV 927 (1158)
Q Consensus 849 GAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~-~~~vllllvl~ll~K~l~v~l~~~~~g~~~ 927 (1158)
.+++.|+.++| +.+.+.+...+--.+++|++-...|..+++..+... ++-+ ++.+..++..+...+...|+++...
T Consensus 178 lplliG~~lgn--l~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~Gi-lL~~~~~~~t~~~~~~~~Rl~~~~~ 254 (326)
T PRK05274 178 LPLLVGFILGN--LDPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGI-LLGVAVVAVTGIPLYLADRLIGGGN 254 (326)
T ss_pred HHHHHHHHHHh--HHHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcch-hhhhhHhhccchhhHhHhheeecCC
Confidence 78888999988 333344444444456999999999999999888654 3322 2222333334444444556664322
Q ss_pred h-hHHHHhhhccccchhhHHHHHHHHhh---ccchhhhHHHHHHHHHHHHHhHHHHHhhhhhHHhhhh
Q 001096 928 I-SAIRTGLLLAPGGEFAFVAFGEAVNQ---GIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFE 991 (1158)
Q Consensus 928 r-eal~lgL~La~rG~valvla~ia~~~---giIs~elfsiLvlvVVlS~IitPlL~~~~~~la~r~~ 991 (1158)
. ..+.++. .-|.-....+.++.-. .-..+.....+..++++|+++.|++..+. .+|+.
T Consensus 255 g~~g~a~~t---taG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~---~k~~~ 316 (326)
T PRK05274 255 GVAGAAAGS---TAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWW---SKRVG 316 (326)
T ss_pred CcchHHHHH---HHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHH---HHHhh
Confidence 1 1111111 1111100111111111 12233333444456678999999998753 34544
No 62
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.10 E-value=0.13 Score=57.82 Aligned_cols=109 Identities=23% Similarity=0.323 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHhhcccchhH-HHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHH
Q 001096 832 ILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIG 910 (1158)
Q Consensus 832 ~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~~-~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll 910 (1158)
+.....++..++++.+++-.++|++++..-++. .-.+.++.+..+-..++....|+++|++.+...+...+.+....++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344567788999999999999999998642210 1112355566677778888999999999988765443333333333
Q ss_pred HH-HHHHHHHHHhcCCChhhHHHHhhhcccc
Q 001096 911 GK-TILVALVGRLFGVSVISAIRTGLLLAPG 940 (1158)
Q Consensus 911 ~K-~l~v~l~~~~~g~~~real~lgL~La~r 940 (1158)
.- ++..+...++++.++.+++.+|..+++-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~T 114 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALS 114 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33 3334445667799999999888887644
No 63
>COG0679 Predicted permeases [General function prediction only]
Probab=96.06 E-value=4.1 Score=47.21 Aligned_cols=136 Identities=22% Similarity=0.207 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHhhcc--cchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHH
Q 001096 844 LSMALGAFLAGLLLAE--TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVG 920 (1158)
Q Consensus 844 ls~vLGAFvAGLiL~n--~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~-~~~vllllvl~ll~K~l~v~l~~ 920 (1158)
.+|.+=++++|+++.. -+..+.+.+.++.+.+.-.|+-++.+|+.++....... ++.+......-++.-++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777664 24555677777888899999999999999998544443 33333333435677788888888
Q ss_pred HhcCCChhhHHHHhh-hccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhh
Q 001096 921 RLFGVSVISAIRTGL-LLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1158)
Q Consensus 921 ~~~g~~~real~lgL-~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~ 982 (1158)
+.++++..+...+=+ ...|.+....++ +.+.+.-.+...+.+++..+++.+..|.+..+
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~---a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVL---ARQYGGDPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHH---HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887655422111 134554444333 34455545556666777777777777666543
No 64
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.04 E-value=0.12 Score=67.35 Aligned_cols=86 Identities=12% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHhchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHH--HHHH
Q 001096 656 IAEFGVVFLLFNIGLELSVERLSSMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVLQ 731 (1158)
Q Consensus 656 LaeLGLi~LLF~aGLelDl~~Lrr~~k~il--~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~a--VVv~ 731 (1158)
...+.+.+++...|+++|+..+.......+ .+.++.++.= ++.+++...++|+++..++.+|++++.-... +++.
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK-~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ 401 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGK-IMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLN 401 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHH
Confidence 356778888888999999988753221111 1111111111 1234455567899999999999998876543 3444
Q ss_pred HHHhcCCCCch
Q 001096 732 VLQERGESTSR 742 (1158)
Q Consensus 732 iL~el~ll~s~ 742 (1158)
+-.+.+.++.+
T Consensus 402 ig~~~gvi~~~ 412 (832)
T PLN03159 402 VGRDQEVLDDE 412 (832)
T ss_pred HHHhcCccCch
Confidence 44555554443
No 65
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.99 E-value=0.011 Score=61.84 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=65.3
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
-++++|+|||++|+-+++.|+..|..|+|.|.||-+.-.+..+|+++.. ++++ +..+|.+|.+|++.. +
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a-~~~adi~vtaTG~~~--v 91 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEA-LRDADIFVTATGNKD--V 91 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHH-TTT-SEEEE-SSSSS--S
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecC--------HHHH-HhhCCEEEECCCCcc--c
Confidence 3569999999999999999999999999999999998888889998763 3333 468999998898853 2
Q ss_pred HHHHHHHhhCCCceEEEEe---cChhhHHHHHHCCC
Q 001096 1089 RTVWALSKYFPNVKTFVRA---HDIDHGLNLEKAGA 1121 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara---~d~e~~~~L~~aGA 1121 (1158)
......+.+..+ -|++-+ +++=+.+.|++.+.
T Consensus 92 i~~e~~~~mkdg-ail~n~Gh~d~Eid~~~L~~~~~ 126 (162)
T PF00670_consen 92 ITGEHFRQMKDG-AILANAGHFDVEIDVDALEANAV 126 (162)
T ss_dssp B-HHHHHHS-TT-EEEEESSSSTTSBTHHHHHTCTS
T ss_pred cCHHHHHHhcCC-eEEeccCcCceeEeeccccccCc
Confidence 333444455444 444433 23335666666643
No 66
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.95 E-value=1.1 Score=52.19 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHhchhh---HHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHhhccccCcHHH-HHHH
Q 001096 658 EFGVVFLLFNIGLELSVERLSSMKKY---VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAV-VLQV 732 (1158)
Q Consensus 658 eLGLi~LLF~aGLelDl~~Lrr~~k~---il~Lai~gvllt~iivglll~~-llGls~~~AlllGaiLs~TS~aV-Vv~i 732 (1158)
.++++++||-.|++++++++++..++ ....-+.++++.. .+++.+.. +++.++ .+.+|.++....|.. ...+
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~P-lla~~l~~l~~~~~p--~l~~GliLv~~~Pgg~~S~v 122 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGP-FLMFLLAWLFLRDLF--EYIAGLILLGLARCIAMVFV 122 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHH-HHHHHHHHHHcCCCH--HHHHHHHHHHhcchHHHHHH
Confidence 34566899999999999998875543 3333333333333 24444443 346553 366666665555543 3444
Q ss_pred HHhcCCCCchhhHHHHHHHhhhhhHHHHHH
Q 001096 733 LQERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1158)
Q Consensus 733 L~el~ll~s~~GrlaLs~sllnDi~aIvll 762 (1158)
+..+...+. -+.++.+.++-+.++++.
T Consensus 123 ~T~lAkGnv---alsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 123 WNQLAKGDP---EYTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HHHHcCCCH---HHHHHHHHHHHHHHHHHH
Confidence 444432222 233334456666665555
No 67
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.92 E-value=0.17 Score=63.05 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhhcccchhH-HHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHH
Q 001096 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGL 907 (1158)
Q Consensus 829 L~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~~-~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl 907 (1158)
+++++.+..++..+|++.++|=+++|++++..-++. .-.+.+..+..+-+.++...+|+++|+..+.......+...+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 455566667788899999999999999998653221 0112345566666777778899999999886643222211222
Q ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHhhhccc
Q 001096 908 LIGGKTILVALVGRLFGVSVISAIRTGLLLAP 939 (1158)
Q Consensus 908 ~ll~K~l~v~l~~~~~g~~~real~lgL~La~ 939 (1158)
.++.-++..+...+.+++++..++.+|..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~ 126 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLST 126 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22223334444556678899999888876555
No 68
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.82 E-value=0.068 Score=61.10 Aligned_cols=121 Identities=18% Similarity=0.080 Sum_probs=83.7
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
..+++|+|+|++|+.+++.|...|.+|++.++++++...+...|...+. .+.+.+. +.++|.|+.+++....+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~-----~~~l~~~-l~~aDiVint~P~~ii~- 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFP-----LNKLEEK-VAEIDIVINTIPALVLT- 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeec-----HHHHHHH-hccCCEEEECCChHHhC-
Confidence 3579999999999999999999999999999999887766666654332 2233332 45899999998765322
Q ss_pred HHHHHHHhhCCCceEEEEecChh--hHHHHHHCCCCeeecC-------CcHHHHHHHHH
Q 001096 1089 RTVWALSKYFPNVKTFVRAHDID--HGLNLEKAGATAVVPE-------TLEPSLQLAAA 1138 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~d~e--~~~~L~~aGAd~VI~p-------~~~a~~~LA~~ 1138 (1158)
...+....|+.-+|=.+.++. .-+..++.|+.++..| ...++++|++.
T Consensus 224 --~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~ 280 (287)
T TIGR02853 224 --ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANV 280 (287)
T ss_pred --HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHH
Confidence 223344555655555555542 2378889999999755 44566656553
No 69
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.79 E-value=0.04 Score=57.39 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=70.1
Q ss_pred ccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh----
Q 001096 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA---- 1086 (1158)
Q Consensus 1012 vVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~---- 1086 (1158)
|+|.|. |.+|+.+++.|.++|++|+++-+++++.+. ..+++++.||..|++.+.++= .++++|+.+.+....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al-~~~d~vi~~~~~~~~~~~~ 77 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAAL-KGADAVIHAAGPPPKDVDA 77 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHH-TTSSEEEECCHSTTTHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhh-hhcchhhhhhhhhcccccc
Confidence 567885 999999999999999999999999998877 779999999999999887753 379999999874322
Q ss_pred hHHHHHHHHhhCCCceEEE
Q 001096 1087 NYRTVWALSKYFPNVKTFV 1105 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIa 1105 (1158)
...++..+++.+.. +++.
T Consensus 78 ~~~~~~a~~~~~~~-~~v~ 95 (183)
T PF13460_consen 78 AKNIIEAAKKAGVK-RVVY 95 (183)
T ss_dssp HHHHHHHHHHTTSS-EEEE
T ss_pred cccccccccccccc-ccee
Confidence 22344455555533 4444
No 70
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.76 E-value=0.025 Score=61.50 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=67.4
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCch-HHHHhhhC-CCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~-~v~~l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
++++|+|.|++|..-++.|.+.|..|++|+++.. ....+.+. ++..+.++.... . +++++.||++|+|++.|
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~-d-----l~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDAD-I-----LEGAFLVIAATDDEELN 83 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHH-H-----hCCcEEEEECCCCHHHH
Confidence 4799999999999999999999999999998764 44455444 566667877633 3 46799999999999999
Q ss_pred HHHHHHHHhhC
Q 001096 1088 YRTVWALSKYF 1098 (1158)
Q Consensus 1088 l~i~l~ar~l~ 1098 (1158)
..+...+++.+
T Consensus 84 ~~i~~~a~~~~ 94 (205)
T TIGR01470 84 RRVAHAARARG 94 (205)
T ss_pred HHHHHHHHHcC
Confidence 99999998764
No 71
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.33 Score=58.08 Aligned_cols=113 Identities=26% Similarity=0.299 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccc--hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhh-HHHH
Q 001096 828 TLLVILGTSLLTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPV-ITGA 904 (1158)
Q Consensus 828 iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~--~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~-vlll 904 (1158)
+++++.....+.+.+|+++++|=.++|+++++.. ...+..+.++.+.++=..++...+|+++|+..++..... ....
T Consensus 14 iL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~ 93 (397)
T COG0475 14 LLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGV 93 (397)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhH
Confidence 3555556668899999999999999999999821 122233444445555566677789999999999886443 2222
Q ss_pred HHHHHHHHHHHH--HHHHHhcCCChhhHHHHhhhccccc
Q 001096 905 LGLLIGGKTILV--ALVGRLFGVSVISAIRTGLLLAPGG 941 (1158)
Q Consensus 905 lvl~ll~K~l~v--~l~~~~~g~~~real~lgL~La~rG 941 (1158)
....+..=++.. +... .+++++..++.+|..++.-.
T Consensus 94 ~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS 131 (397)
T COG0475 94 AQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSS 131 (397)
T ss_pred HHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHH
Confidence 222222221222 2222 57999999998888765443
No 72
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=95.33 E-value=7.4 Score=45.02 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhhccc--chhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001096 845 SMALGAFLAGLLLAET--EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL 922 (1158)
Q Consensus 845 s~vLGAFvAGLiL~n~--~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~ 922 (1158)
+|.+-+.++|+++.-. +.+.-+.+.++.+.+...|+-.+.+|+.++...+...++.......+.++.-++.++.....
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~ 261 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKL 261 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555532 23456667777788889999999999999887775555555555666677777777777777
Q ss_pred cCCChhhHHHHhh-hccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHh
Q 001096 923 FGVSVISAIRTGL-LLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1158)
Q Consensus 923 ~g~~~real~lgL-~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~ 981 (1158)
++.+.......-+ ...|-+....+ .+.++|.-.+...+.+++..+++.+..|++..
T Consensus 262 ~~l~~~~~~~~vl~aa~P~a~~~~i---~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~ 318 (321)
T TIGR00946 262 IGLRGLELSVAILQAALPGGAVAAV---LATEYEVDVELASTAVTLSTVLSLISLPLFII 318 (321)
T ss_pred hCCChHHHHHHHHHHcCChhhHHHH---HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776433221111 12344443333 34455544455556666667777777777653
No 73
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.30 E-value=0.078 Score=55.27 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=71.7
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
++-++|.|.+|..+++.|.+.|++|.+.|.++++.+++.+.|.... .+-.+..+ +++.|++++.|+..-..+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~---~s~~e~~~-----~~dvvi~~v~~~~~v~~v 74 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVA---DSPAEAAE-----QADVVILCVPDDDAVEAV 74 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEE---SSHHHHHH-----HBSEEEE-SSSHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhh---hhhhhHhh-----cccceEeecccchhhhhh
Confidence 4678999999999999999999999999999999999988873222 22233333 459999999998655455
Q ss_pred HHH---HHhhCCCceEEEEecC--hh----hHHHHHHCCCCeeecC
Q 001096 1091 VWA---LSKYFPNVKTFVRAHD--ID----HGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1091 ~l~---ar~l~p~~~IIara~d--~e----~~~~L~~aGAd~VI~p 1127 (1158)
... +..+.+. .+++-... ++ ..+.+.+.|+..|-.|
T Consensus 75 ~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 75 LFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp HHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 443 3333343 56665553 33 3445566787776655
No 74
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.27 E-value=0.056 Score=63.94 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=72.7
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEec---CCchh
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL---DTPGA 1086 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t---~dd~~ 1086 (1158)
..++|+|.|.+|+.+++.+...|.+|+++|.++++.+.+....-..+..+..+++.|.++ +.++|.||.++ +.+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEEEccccCCCCCC
Confidence 458999999999999999999999999999999988777554333344556667777665 67899999887 33334
Q ss_pred hHHHHHHHHhhCCCceEEEEecC
Q 001096 1087 NYRTVWALSKYFPNVKTFVRAHD 1109 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIara~d 1109 (1158)
++.....++...|...|+-.+.|
T Consensus 247 ~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 247 KLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred cCcCHHHHhcCCCCCEEEEEecC
Confidence 44445566667777666655544
No 75
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.24 E-value=0.17 Score=54.59 Aligned_cols=127 Identities=24% Similarity=0.369 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCCh-----hHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 001096 630 LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSV-----ERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1158)
Q Consensus 630 VG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl-----~~Lrr~~k~il~Lai~gvllt~iivglll~ 704 (1158)
++.+++|+++|-..... ....+.+.+..+.+++|.+|+++-- +.+++.+++.+.+.+...+.+. +.++++.
T Consensus 2 l~~li~Gi~lG~~~~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSl-lgg~l~~ 77 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP---FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSL-LGGLLAS 77 (191)
T ss_pred eeeHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34577888888643222 2223788899999999999998843 3566667888877777666554 5667777
Q ss_pred HHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHH
Q 001096 705 FVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLIL 764 (1158)
Q Consensus 705 ~llGls~~~AlllGaiLs~TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~l 764 (1158)
.++++++..++.+++-+.-=|..- .++.+.. +...|.+++-.=++-++.++++.-+
T Consensus 78 ~ll~~~~~~~lav~sG~GwYSlsg--~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~ 133 (191)
T PF03956_consen 78 LLLGLSLKESLAVASGFGWYSLSG--VLITQLY--GPELGTIAFLSNLFREILAIILIPL 133 (191)
T ss_pred HHhcCCHHHHHHHHccCcHHHhHH--HHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999988766544432 2234432 3456777666666666666655533
No 76
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.22 E-value=0.078 Score=60.79 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=59.0
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
.++|.| .|.+|..+++.|.+.|++|+++.++++....+...|+.++.||.+|++.|.++ ++++|+|+-+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEECCC
Confidence 367777 59999999999999999999999998776655667899999999999999765 346788887643
No 77
>PRK03818 putative transporter; Validated
Probab=95.15 E-value=0.21 Score=62.12 Aligned_cols=127 Identities=21% Similarity=0.327 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhcccc--cccccCchhHHHHHHHHHHHHHHHHHhcCChhHH
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKIPGGS-PVLGYLAAGILIGPYG--LSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl~glP-~VVG~ILaGILLGP~g--Lgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~L 677 (1158)
++++.+++.+.+++++|.+ |+.+++ .+.|-+++|+++|... +|..-+.....++.++|+.+++|.+|++.-+..+
T Consensus 6 ~~~~~l~l~i~lG~~lG~i--~i~g~~LG~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~ 83 (552)
T PRK03818 6 LTVSILALVAVVGLWIGNI--KIRGVGLGIGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFF 83 (552)
T ss_pred HHHHHHHHHHHHHHhhcce--EECCCccccHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 3344444444445544431 121121 2479999999999722 2322234456789999999999999999988766
Q ss_pred Hhchh---hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHH
Q 001096 678 SSMKK---YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ 731 (1158)
Q Consensus 678 rr~~k---~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~ 731 (1158)
...++ +...++++-++++. ++++++++++++++..+.=+ .+=+.|+++..-.
T Consensus 84 ~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~-~aGa~T~tp~l~a 138 (552)
T PRK03818 84 SSLRKSGLRLNLFAVLIVILGG-LVTAILHKLFGIPLPVMLGI-FSGAVTNTPALGA 138 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHH-hhccccccHHHHH
Confidence 55444 44444444444444 45666788899986532211 1224455554433
No 78
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.13 E-value=0.36 Score=60.23 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhhcccchhH---HHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHH
Q 001096 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL---QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGAL 905 (1158)
Q Consensus 829 L~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~~---~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllll 905 (1158)
+++...+..++..+|++.+++-+++|++++....+. .-.+..+.+..+.++++....|+++|+..+...+...+.+.
T Consensus 15 l~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la 94 (562)
T PRK05326 15 LLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLA 94 (562)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHH
Confidence 444555567788899999999999999998753221 11123455677888888999999999999987655443333
Q ss_pred HHHHHHH-HHHHHHHHHhcCCChhhHHHHhhhccccchh
Q 001096 906 GLLIGGK-TILVALVGRLFGVSVISAIRTGLLLAPGGEF 943 (1158)
Q Consensus 906 vl~ll~K-~l~v~l~~~~~g~~~real~lgL~La~rG~v 943 (1158)
.+.++.- .+..+...++++++|.+++.+|..+++-...
T Consensus 95 ~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 95 TLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 3332222 2334455567799999999998887665543
No 79
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.13 E-value=0.39 Score=56.12 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=82.9
Q ss_pred hCchHHHHHHHHHHhhcccc---hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHH-HH
Q 001096 842 AGLSMALGAFLAGLLLAETE---FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTIL-VA 917 (1158)
Q Consensus 842 lGls~vLGAFvAGLiL~n~~---~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~-v~ 917 (1158)
.++++.+=+.+.|++++|.. ..+....-++-....++-+=-++.|+++++..+...-+..+.+.++.+..-++. .+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999842 222222222222445566666788999999998764333333333333344444 44
Q ss_pred HHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhH---HHHHHHHHHHHHhHHHHHhhh
Q 001096 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLS---SLLFLLVGISMALTPWLAAGG 983 (1158)
Q Consensus 918 l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elf---siLvlvVVlS~IitPlL~~~~ 983 (1158)
+..+++|++++.+..++.+.+--|.-+++...-..+.. +++.. +.+++.-.+.+++-|++.++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999998887666655444433222221 22222 222233345677788887654
No 80
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.08 E-value=5.4 Score=46.91 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=72.3
Q ss_pred CchHHHHHHHHHHhhcccc-hhHHHHHhHHhHHHHH----HHHHHHHHhcc-cChhhhhhhh-hhHHHHHHHHHHHHHHH
Q 001096 843 GLSMALGAFLAGLLLAETE-FSLQVESDIAPYRGLL----LGLFFMTVGMS-IDPKLLLSNF-PVITGALGLLIGGKTIL 915 (1158)
Q Consensus 843 Gls~vLGAFvAGLiL~n~~-~~~~l~e~l~~~~~~f----lPlFFvliGm~-idl~~L~~~~-~~vllllvl~ll~K~l~ 915 (1158)
++|+..-..++|.++.... .++++++....+..|+ .+..|+-+|+. +|+..+.+.+ +..+++++..+++-.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 5677777777777777643 3455666555554333 33444445765 7888887754 33445556667778888
Q ss_pred HHHHHHhcCCChhhHHH-Hhhhccccchhh-HHHHHHHHhhccc
Q 001096 916 VALVGRLFGVSVISAIR-TGLLLAPGGEFA-FVAFGEAVNQGIM 957 (1158)
Q Consensus 916 v~l~~~~~g~~~real~-lgL~La~rG~va-lvla~ia~~~giI 957 (1158)
.++.+++.|+-+-|+.. .|+.|+.+|..+ +.+++.+...+++
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccc
Confidence 89999999987777654 566777666543 4444444444443
No 81
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.00 E-value=0.36 Score=61.71 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-h-cCCChhhHHHHhhhccccchh
Q 001096 873 YRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGR-L-FGVSVISAIRTGLLLAPGGEF 943 (1158)
Q Consensus 873 ~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~-~-~g~~~real~lgL~La~rG~v 943 (1158)
+..+.+++.-+..|+.++...+...|..++.+++..+..-++.+.+..+ + .+++|..++.+|.+++|-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 5667788888889999999999888876554444444444444444443 3 599999999999999887754
No 82
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.94 E-value=0.15 Score=63.61 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHh
Q 001096 601 ASLFDVLWLLLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~R-l~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr 679 (1158)
+|++.+++++.+++++|.+--+ + ++-.+.|-+++|+++|..+.. ..+.+.++|+++++|.+|++.-+.-++.
T Consensus 10 ~p~l~lfl~i~lG~~lG~iki~~~-~LG~~~gvLfvgl~~G~~g~~------i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~ 82 (562)
T TIGR03802 10 NPEIALFLSLALGYLIGKIKFGSF-QLGGVAGSLIVAVLIGQLGIQ------IDPGVKAVFFALFIFAIGYEVGPQFFAS 82 (562)
T ss_pred CHHHHHHHHHHHhHhhcceEEeee-ecchHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHhhhccCHHHHHH
Confidence 4445555555555555443322 3 445578999999999976443 3345888999999999999999987776
Q ss_pred chhhHHHHHHHHHHHH--HHHHHHHHHHHhCCChHH--HHHHhhccccCcHHHHHHHHHhcCC
Q 001096 680 MKKYVFGLGSAQVLVT--AVVVGLVAHFVSGLPGPA--SIVIGNGLALSSTAVVLQVLQERGE 738 (1158)
Q Consensus 680 ~~k~il~Lai~gvllt--~iivglll~~llGls~~~--AlllGaiLs~TS~aVVv~iL~el~l 738 (1158)
.++..+.+.+..++++ .+++.+.+++++|++... .++-|+.-+..+.+.+...+...+.
T Consensus 83 l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~ 145 (562)
T TIGR03802 83 LKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGL 145 (562)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCC
Confidence 6654444333333322 234556677788987543 3333332222222345555655553
No 83
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.91 E-value=0.14 Score=55.78 Aligned_cols=87 Identities=18% Similarity=0.061 Sum_probs=68.2
Q ss_pred ccccCC-cccHHHHHHHHhhCCCCEEEEeCCch--HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC---Cch
Q 001096 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD---TPG 1085 (1158)
Q Consensus 1012 vVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~--~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~---dd~ 1085 (1158)
++|+|. |.+|+.+++.|.+.+++|.++-+++. ..+.+++.|..++.+|..|++.|.++ ++.++.|+++++ +..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~~~~~~~~~~~ 79 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVFSVTPPSHPSE 79 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEEEESSCSCCCH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEEeecCcchhhh
Confidence 456675 99999999999999999999999974 46778889999999999999999776 568999999998 332
Q ss_pred --hhHHHHHHHHhhCC
Q 001096 1086 --ANYRTVWALSKYFP 1099 (1158)
Q Consensus 1086 --~Nl~i~l~ar~l~p 1099 (1158)
.-..++.++++.+-
T Consensus 80 ~~~~~~li~Aa~~agV 95 (233)
T PF05368_consen 80 LEQQKNLIDAAKAAGV 95 (233)
T ss_dssp HHHHHHHHHHHHHHT-
T ss_pred hhhhhhHHHhhhcccc
Confidence 22346667777763
No 84
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.91 E-value=0.33 Score=60.12 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHH
Q 001096 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLL 908 (1158)
Q Consensus 829 L~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ 908 (1158)
++++.+...+++.+++++.++-+++|++++..+....+.-.-+.+..+++|+.....|+++|...+..++..++.+.+..
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~ 86 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL 86 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 44455556778889999999999999998854322111101112345788888889999999999988765544433333
Q ss_pred HHH-HHHHHHHHHHhcCCChhhHHHHhhhccccchhhH
Q 001096 909 IGG-KTILVALVGRLFGVSVISAIRTGLLLAPGGEFAF 945 (1158)
Q Consensus 909 ll~-K~l~v~l~~~~~g~~~real~lgL~La~rG~val 945 (1158)
++. -.+..+...+..++|+..++.+|..++|-..+..
T Consensus 87 vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 87 VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 333 3333344444679999999999999888876653
No 85
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.90 E-value=0.34 Score=56.05 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhhcccc-hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHH
Q 001096 830 LVILGTSLLTARAGLSMALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLL 908 (1158)
Q Consensus 830 ~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~-~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ 908 (1158)
++.++-.......|+++.+=|.+.|+++++.+ .+++...-+.-....++.+=-++.|++++++.+.+.-.-.+.+.+..
T Consensus 23 a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~ 102 (334)
T COG2855 23 AMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAIT 102 (334)
T ss_pred HHHHhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHH
Confidence 33344445556777889999999999999653 33344434444456777777788999999999977433344555556
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHH---HHHhHHHHHhhh
Q 001096 909 IGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI---SMALTPWLAAGG 983 (1158)
Q Consensus 909 ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVl---S~IitPlL~~~~ 983 (1158)
+..-++..+...+++|++++.++.+|.+-+--|.-+++...-.. +--+++....+..++++ .+++-|++..+.
T Consensus 103 l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi--ka~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 103 LSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI--KAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC--CCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 66777888888889999999999998875555543333222111 11133333333333333 345567776544
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.89 E-value=2.8 Score=54.62 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=47.4
Q ss_pred CCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHH
Q 001096 260 KSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA-------EKAQMNALKAEEDVA 327 (1158)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~-------~~~~~~~~~a~~~~~ 327 (1158)
+.|++.-++.|..+|++-...+..+.+...+|+.|..+.+||+.+...-.+-| ..|+..|..||.-.-
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~ 1664 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE 1664 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888888888888888888888887765544433 344444444444433
No 87
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.80 E-value=0.15 Score=60.41 Aligned_cols=120 Identities=18% Similarity=0.096 Sum_probs=91.9
Q ss_pred ccccccCCcccHHHHHHHHhhCC-CCEEEEeCCchHHHHhhhC---CCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g-~~VvVID~d~~~v~~l~~~---g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
..++|+|.|.+|+.++..|.+++ .+|++.|++.+++.+.... ....+.=|+.+.+.|.++=- +.++||.+.+-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~-~~d~VIn~~p~~- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK-DFDLVINAAPPF- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh-cCCEEEEeCCch-
Confidence 35899999999999999999888 8999999999999888666 48999999999999988744 449988888766
Q ss_pred hhHHHHHHHHhhCCCceEEEEecCh----hhHHHHHHCCCCeeecCCcHHHH
Q 001096 1086 ANYRTVWALSKYFPNVKTFVRAHDI----DHGLNLEKAGATAVVPETLEPSL 1133 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l~p~~~IIara~d~----e~~~~L~~aGAd~VI~p~~~a~~ 1133 (1158)
.+..+..++-+..- ..+-.+++. +..+..+++|+..|..--..+|.
T Consensus 80 ~~~~i~ka~i~~gv--~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi 129 (389)
T COG1748 80 VDLTILKACIKTGV--DYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGI 129 (389)
T ss_pred hhHHHHHHHHHhCC--CEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcch
Confidence 45555555555542 333333333 36778899999999876666654
No 88
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.70 E-value=0.077 Score=58.29 Aligned_cols=113 Identities=18% Similarity=0.057 Sum_probs=76.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCc----------hHHHHhhhCC-CCEE-EccCCCHHHHHhcCccccC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS----------DRVAIGRALD-LPVY-FGDAGSREVLHKVGAERAC 1075 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~----------~~v~~l~~~g-~~vi-~GDasd~e~L~~AgI~~A~ 1075 (1158)
..+++|.|+|.+|+.+++.|.+.|. .|.+.|.+. +.++..++.+ ...+ .+|..+.+.+.. . ++|
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~~D 99 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG--L-DVD 99 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee--c-ccc
Confidence 4589999999999999999999977 666788887 6665554433 2211 134444455543 3 689
Q ss_pred EEEEecCCchhhHHHHHHHHhhCCCceEEE-Eec---ChhhHHHHHHCCCCeeecCCcHH
Q 001096 1076 AAAITLDTPGANYRTVWALSKYFPNVKTFV-RAH---DIDHGLNLEKAGATAVVPETLEP 1131 (1158)
Q Consensus 1076 ~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIa-ra~---d~e~~~~L~~aGAd~VI~p~~~a 1131 (1158)
.++-+...+..|-.. ++++. +++|+ .+| .++..+.|++-| .++.|...+
T Consensus 100 VlipaA~~~~i~~~~---a~~l~--a~~V~e~AN~p~t~~a~~~L~~~G--i~v~Pd~~~ 152 (217)
T cd05211 100 IFAPCALGNVIDLEN---AKKLK--AKVVAEGANNPTTDEALRILHERG--IVVAPDIVA 152 (217)
T ss_pred EEeeccccCccChhh---HhhcC--ccEEEeCCCCCCCHHHHHHHHHCC--cEEEChHHh
Confidence 988888776554444 44443 45555 666 578889999998 455565554
No 89
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.69 E-value=0.048 Score=55.47 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=74.8
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEcc----------CCCHHHHHhcCccccCEEEEec
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGD----------AGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GD----------asd~e~L~~AgI~~A~~VIi~t 1081 (1158)
++|+|.|.+|..++-.|.+.|++|.++.+.+ +.+..++.|+.+...+ ..++ ....+.+|.|++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP----SADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH----GHHHSTESEEEE-S
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc----hhccCCCcEEEEEe
Confidence 5789999999999999999999999999988 8887887787776665 1112 34567899999999
Q ss_pred CCchhhHHHHHHHHhhCCCceEEEEecChhhHHHHHHC
Q 001096 1082 DTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKA 1119 (1158)
Q Consensus 1082 ~dd~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~a 1119 (1158)
......-.+....+...|+..|+.--|-....+.+.+.
T Consensus 76 Ka~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 76 KAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp SGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred cccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 87755544444444445665566655556666777654
No 90
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=94.66 E-value=0.46 Score=49.56 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHH
Q 001096 608 WLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (1158)
Q Consensus 608 lLLl~a~ilg~Ll~Rl~glP--~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il 685 (1158)
+.++++.+.+.+++++ ++| .++|-++++.++.-.+. .+......+..++.+++-..+|..++.+.+++..+...
T Consensus 2 ~~~~~~~~~g~l~~~l-~~Pa~~llG~mi~~~~~~~~~~---~~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~ 77 (156)
T TIGR03082 2 LLLLVGLAGGLLASLL-GLPAAWLLGPLLAGAVLSLAGG---LEITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWP 77 (156)
T ss_pred HHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhcCC---ccCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3456778888899988 887 67788888877764321 12456678889999999999999999999887766443
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 001096 686 GL--GSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1158)
Q Consensus 686 ~L--ai~gvllt~iivglll~~llGls~~~All 716 (1158)
.. ..+.+++..++.+++++.+.++++..+++
T Consensus 78 ~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L 110 (156)
T TIGR03082 78 AALLSTVLLLALSALLAWLLARLTGVDPLTAFL 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 22222233344566677788999888765
No 91
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.52 E-value=0.22 Score=56.65 Aligned_cols=106 Identities=13% Similarity=-0.015 Sum_probs=70.5
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCC------HHHHHhcCccccCEEEEecCCc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS------REVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd------~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
++.|+|.|.+|..++..|.+.|++|+++++ +++.+.+++.|+.+...+... ......+ .+.+|.+++++...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vilavk~~ 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEEL-TGPFDLVILAVKAY 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHc-cCCCCEEEEEeccc
Confidence 478999999999999999999999999999 888888887776554432110 0011111 36899999999887
Q ss_pred hhhHHHHHHHHhhCCCceEEEEecChhhHHHHHH
Q 001096 1085 GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1085 ~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~ 1118 (1158)
...-.+......+.++..|+...+-....+.+.+
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 5544443333334555555555555444455544
No 92
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.46 E-value=0.27 Score=56.46 Aligned_cols=138 Identities=20% Similarity=0.173 Sum_probs=87.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
..+++|+|+|..|+.++..|+..|..|+++|+++++....+..|...+. .+.+.+ .+.++|.||.+++....
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~-----~~~l~~-~l~~aDiVI~t~p~~~i-- 223 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFH-----LSELAE-EVGKIDIIFNTIPALVL-- 223 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeec-----HHHHHH-HhCCCCEEEECCChhhh--
Confidence 4679999999999999999999999999999999887777777765442 122322 24579999998865322
Q ss_pred HHHHHHHhhCCCceEEEEecChhhH--HHHHHCCCCeeecCCcH--HHHHHHHHHHHhhhhhhhhHHHHhc
Q 001096 1089 RTVWALSKYFPNVKTFVRAHDIDHG--LNLEKAGATAVVPETLE--PSLQLAAAVLAQVIHDYQREKVFRS 1155 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~d~e~~--~~L~~aGAd~VI~p~~~--a~~~LA~~vl~~~i~~~~~~~vf~~ 1155 (1158)
....++...|...+|=.+.++-.. ...++.|+.++..+..- .+-.-+..++...+..++...+.++
T Consensus 224 -~~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~~~~~~~i~~~l~~~~~~~ 293 (296)
T PRK08306 224 -TKEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLAPGLPGKVAPKTAGQILANVLSQLLAEDLIAR 293 (296)
T ss_pred -hHHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEECCCCccCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222344456666666555554322 35577888887422211 1112333344555555554444444
No 93
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.22 E-value=4.2 Score=50.56 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=54.1
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001096 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEA 343 (1158)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~ 343 (1158)
++++++=-.-||-|+..|+-+..-+.++.++|...++||.... |++|-.|.++-+..-+|... -+.|=+.|=+-
T Consensus 512 ~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~-----a~qat~d~a~~Dlqk~nrlk-Qdear~~~~~l 585 (961)
T KOG4673|consen 512 RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL-----AEQATNDEARSDLQKENRLK-QDEARERESML 585 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHhhhhhhhhHHHHhhhh-hhHHHHHHHHH
Confidence 3455555566777888888888888888888888888876543 33344444333333344322 23444445555
Q ss_pred hhhcccHHHHHHHHHHh
Q 001096 344 TQRVNDAEIALQRAEKS 360 (1158)
Q Consensus 344 ~~~~~~~~~~~~~~~~~ 360 (1158)
.|.|.|-..+|+|+|.+
T Consensus 586 vqqv~dLR~~L~~~Eq~ 602 (961)
T KOG4673|consen 586 VQQVEDLRQTLSKKEQQ 602 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666666553
No 94
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.12 E-value=1.9 Score=51.62 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHHhcCChhHHH
Q 001096 604 FDVLWLLLASVIFVPIFQK--IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1158)
Q Consensus 604 l~i~lLLl~a~ilg~Ll~R--l~glP~VVG~ILaGILLGP~g--Lgli~-~~~~l~~LaeLGLi~LLF~aGLelDl~~Lr 678 (1158)
..+.+.+.+++++...+++ + .+|..++-+++|+++.... .+..+ .....+.++++.+-+++-.+=..+++..+.
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~-~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~ 300 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTAL-MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELA 300 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 3344444455555555553 4 6899999999999998642 11111 234778999999999999998999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH----HHhhccccCcHHHH--HHHHHhcCCCCchhhHHHHHHHh
Q 001096 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASI----VIGNGLALSSTAVV--LQVLQERGESTSRHGRATFSVLL 752 (1158)
Q Consensus 679 r~~k~il~Lai~gvllt~iivglll~~llGls~~~Al----llGaiLs~TS~aVV--v~iL~el~ll~s~~GrlaLs~sl 752 (1158)
...-+.+.+.+.+++++.+..-++.+.++|-+...+. ..|..+.+|.++++ -.+-++.|..++.+--+=+--+.
T Consensus 301 ~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf 380 (398)
T TIGR00210 301 DLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAF 380 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHH
Confidence 9999999999999998887666777778887754444 56777788888753 33446666544433222233456
Q ss_pred hhhhHHHHHH
Q 001096 753 FQDLAVVVLL 762 (1158)
Q Consensus 753 lnDi~aIvll 762 (1158)
+-|++-.++.
T Consensus 381 ~id~~n~~~i 390 (398)
T TIGR00210 381 FIDIINALVI 390 (398)
T ss_pred HHHHhhHHHH
Confidence 6666544433
No 95
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.09 E-value=0.33 Score=55.61 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=74.1
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
++-++|.|.+|..+++.|.+.|++|++.|+++++++.+.+.|.... .+.+.+.+ .++++|.|+++++++ ..-.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~-~~~~~dvIi~~vp~~-~~~~v 75 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGV----ANLRELSQ-RLSAPRVVWVMVPHG-IVDAV 75 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCccc----CCHHHHHh-hcCCCCEEEEEcCch-HHHHH
Confidence 3678999999999999999999999999999999998887764332 34443332 235789999999988 33333
Q ss_pred HHHHHh-hCCCceEEEEecCh------hhHHHHHHCCCCeeecC
Q 001096 1091 VWALSK-YFPNVKTFVRAHDI------DHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1091 ~l~ar~-l~p~~~IIara~d~------e~~~~L~~aGAd~VI~p 1127 (1158)
+..+.. +.++ .+++-..+. +....+++.|+..+=.|
T Consensus 76 ~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 76 LEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred HHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEecC
Confidence 333333 3344 555555432 23335556677655444
No 96
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.07 E-value=0.43 Score=54.76 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=73.7
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHH-HHHhcCccccCEEEEecCCchhhHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSRE-VLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e-~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
++-++|.|.+|..+++.|.+.|++|++.|.++++.+.+.+.|..+. .+++ ..+. .+.+|.|+++++++.....
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~----~~~~e~~~~--~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGA----DSLEELVAK--LPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeec----CCHHHHHhh--cCCCCEEEEEecCCcHHHH
Confidence 3678999999999999999999999999999999998887775432 2333 3333 2357899999988744333
Q ss_pred HHHHHHh-hCCCceEEEEec--Ch----hhHHHHHHCCCCeeecC
Q 001096 1090 TVWALSK-YFPNVKTFVRAH--DI----DHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1090 i~l~ar~-l~p~~~IIara~--d~----e~~~~L~~aGAd~VI~p 1127 (1158)
+...+.. +.++ .+++-.. ++ +..+.+++.|+..+-.|
T Consensus 76 v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 76 TIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 3333332 3343 4444432 22 23456677798876544
No 97
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.96 E-value=0.32 Score=55.78 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=71.5
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCH-HHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSR-EVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~-e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
+-++|.|.+|..+++.|.+.|++|++.|+++++.+.+.+.|.... .++ +..+++ +.++.|+++++++.....+
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~----~s~~~~~~~~--~~advVi~~vp~~~~~~~v 76 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITAR----HSLEELVSKL--EAPRTIWVMVPAGEVTESV 76 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeec----CCHHHHHHhC--CCCCEEEEEecCchHHHHH
Confidence 678999999999999999999999999999999988877664321 233 333443 3579999999988544444
Q ss_pred HHHHHh-hCCCceEEEEec--Ch----hhHHHHHHCCCCeee
Q 001096 1091 VWALSK-YFPNVKTFVRAH--DI----DHGLNLEKAGATAVV 1125 (1158)
Q Consensus 1091 ~l~ar~-l~p~~~IIara~--d~----e~~~~L~~aGAd~VI 1125 (1158)
...+.. +.++ .+++... ++ +..+.+.+.|+..+=
T Consensus 77 ~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 77 IKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 333333 2333 4555542 22 334445566876544
No 98
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.94 E-value=0.33 Score=54.38 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=72.9
Q ss_pred ccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.+.+++|+|.|.+++.+++.+...|++|+++|.+++......-.+...+..+. -.+.+.. ++.-+++|++|.|....
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~t~vvi~th~h~~D 175 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDE-PEAEVAE--APPGSYFLVLTHDHALD 175 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCC-HHHHHhc--CCCCcEEEEEeCChHHH
Confidence 35789999999999999999999999999999998844322222333233222 1334443 45678899999887666
Q ss_pred HHHHHHHHhhCCCceEEEEecChhh---HHHHHHCCC
Q 001096 1088 YRTVWALSKYFPNVKTFVRAHDIDH---GLNLEKAGA 1121 (1158)
Q Consensus 1088 l~i~l~ar~l~p~~~IIara~d~e~---~~~L~~aGA 1121 (1158)
..+...+-+..|-.+|=+....... .+.|++.|.
T Consensus 176 ~~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 176 LELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 6665555433344477666664444 345555664
No 99
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.85 E-value=0.25 Score=54.60 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=64.3
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCch-HHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~-~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
..+++|+|.|+++.+=++.|.+.|-.|++|-++-. .+..+.+ ..+..+..+.. ++. ++.+..||++|+|++.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~-~~d-----l~g~~LViaATdD~~v 98 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYD-KEF-----IKDKHLIVIATDDEKL 98 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC-hHH-----hCCCcEEEECCCCHHH
Confidence 34799999999999999999999999999976642 3333433 34556655443 333 4679999999999999
Q ss_pred hHHHHHHHHhhC
Q 001096 1087 NYRTVWALSKYF 1098 (1158)
Q Consensus 1087 Nl~i~l~ar~l~ 1098 (1158)
|-.+...+++.+
T Consensus 99 N~~I~~~a~~~~ 110 (223)
T PRK05562 99 NNKIRKHCDRLY 110 (223)
T ss_pred HHHHHHHHHHcC
Confidence 999999998864
No 100
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.82 E-value=0.16 Score=59.37 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=66.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCc---------------------hHHH----HhhhC----CCCEEEc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS---------------------DRVA----IGRAL----DLPVYFG 1058 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~---------------------~~v~----~l~~~----g~~vi~G 1058 (1158)
..+|+|+|.|.+|..+++.|...|+ .+++||.|. .+++ ++++. .+..+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~ 103 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT 103 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence 4689999999999999999999998 899999985 1222 22222 2445666
Q ss_pred cCCCHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1059 Dasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
|.+ ++.++++ ++++|.||.++++...++.+...+++.+
T Consensus 104 ~~~-~~~~~~~-~~~~DlVid~~D~~~~r~~in~~~~~~~ 141 (338)
T PRK12475 104 DVT-VEELEEL-VKEVDLIIDATDNFDTRLLINDLSQKYN 141 (338)
T ss_pred cCC-HHHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 765 3455554 6789999999999998888888888765
No 101
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.81 E-value=0.18 Score=51.30 Aligned_cols=109 Identities=13% Similarity=-0.051 Sum_probs=69.1
Q ss_pred cccccccCCcccHHHHHHHHhhCC-CCEEEEeCCchHHHHhhhC-CCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g-~~VvVID~d~~~v~~l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
..+++|+|.|.+|..+++.|.+.+ ..+.++|+++++.+...+. +...+..+..+.+.+ ++++|.||.+++.+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL----LAEADLIINTTPVGMK 94 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc----cccCCEEEeCcCCCCC
Confidence 356899999999999999999985 7899999999887665332 321111223333222 6789999999988754
Q ss_pred ---hHHHHHHHHhhCCCceEEEEecCh---hhHHHHHHCCCCe
Q 001096 1087 ---NYRTVWALSKYFPNVKTFVRAHDI---DHGLNLEKAGATA 1123 (1158)
Q Consensus 1087 ---Nl~i~l~ar~l~p~~~IIara~d~---e~~~~L~~aGAd~ 1123 (1158)
+.... .....+...++-....+ ...+.+++.|+..
T Consensus 95 ~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~ 135 (155)
T cd01065 95 PGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKT 135 (155)
T ss_pred CCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCce
Confidence 22211 12233443333333333 4567778888843
No 102
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.53 E-value=0.15 Score=49.35 Aligned_cols=79 Identities=14% Similarity=0.017 Sum_probs=58.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
..+++|+|.|+++.+-++.|.+.|-+++++.++....+ ..+.... +. ++ ..+++++.|+++++|+..|-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~-~~-----~~-~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIR-RE-----FE-EDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEE-SS------G-GGCTTESEEEE-SS-HHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHh-hh-----HH-HHHhhheEEEecCCCHHHHH
Confidence 35799999999999999999999999999999862222 2233222 21 12 44788999999999999999
Q ss_pred HHHHHHHhhC
Q 001096 1089 RTVWALSKYF 1098 (1158)
Q Consensus 1089 ~i~l~ar~l~ 1098 (1158)
.+...+|+.+
T Consensus 76 ~i~~~a~~~~ 85 (103)
T PF13241_consen 76 AIYADARARG 85 (103)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhCC
Confidence 9999998764
No 103
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.47 E-value=0.19 Score=59.34 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=81.6
Q ss_pred ccccCCcccHHHHHHHHhhCCC--CEEEEeCCchHHHHhhh----CCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1012 IILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~--~VvVID~d~~~v~~l~~----~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
|+|+|.|.+|+.+++.|.+++. ++++.|+|.++.+++.+ ..+..+.-|..|++.|.++ ++++|.||-+.+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dvVin~~gp~- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDVVINCAGPF- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSEEEE-SSGG-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCEEEECCccc-
Confidence 5789999999999999998874 89999999999887743 4788899999999998888 78889998888776
Q ss_pred hhHHHHHHHHhhCCCceEEEEecC-----hhhHHHHHHCCCCeeecCCcHH
Q 001096 1086 ANYRTVWALSKYFPNVKTFVRAHD-----IDHGLNLEKAGATAVVPETLEP 1131 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l~p~~~IIara~d-----~e~~~~L~~aGAd~VI~p~~~a 1131 (1158)
.+..++..+.+..-+ +|= ... ...-+..+++|...++.--..+
T Consensus 79 ~~~~v~~~~i~~g~~-yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~P 126 (386)
T PF03435_consen 79 FGEPVARACIEAGVH-YVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDP 126 (386)
T ss_dssp GHHHHHHHHHHHT-E-EEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTT
T ss_pred hhHHHHHHHHHhCCC-eec--cchhHHHHHHHHHHHHhhCCEEEeCccccc
Confidence 777777777776632 222 222 3345556778888877544443
No 104
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.35 E-value=1.1 Score=47.67 Aligned_cols=120 Identities=18% Similarity=0.252 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcC-----CCchHHHHHHHHHhhccccc-c-cccCchhHHHHHHHHHHHHHHHHHhcCChhHHH---hchh
Q 001096 613 SVIFVPIFQKIP-----GGSPVLGYLAAGILIGPYGL-S-IIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS---SMKK 682 (1158)
Q Consensus 613 a~ilg~Ll~Rl~-----glP~VVG~ILaGILLGP~gL-g-li~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lr---r~~k 682 (1158)
+..+|.++-+++ ++-...|-+++|+++|...- + ...+......+.++|+.++++.+|++--++-+. +.+.
T Consensus 5 ~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~ 84 (169)
T PF06826_consen 5 GIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGL 84 (169)
T ss_pred HHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444445554440 33344589999999996421 0 112445678999999999999999988776444 4444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhc-cccCcHHHHHHHHH
Q 001096 683 YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQ 734 (1158)
Q Consensus 683 ~il~Lai~gvllt~iivglll~~llGls~~~AlllGai-Ls~TS~aVVv~iL~ 734 (1158)
+...++++-++++.++..++.++++++++... .|.. =+.|+|+..-...+
T Consensus 85 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~--~G~~aGa~T~tp~L~~A~~ 135 (169)
T PF06826_consen 85 KLLLLGVIITLVPLLIALVIGRYLFKLNPGIA--AGILAGALTSTPALAAAQE 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHccccCcHHHHHHHH
Confidence 55556666555665544455555888875432 2222 23456555444443
No 105
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.31 E-value=0.29 Score=54.89 Aligned_cols=116 Identities=16% Similarity=0.031 Sum_probs=75.7
Q ss_pred ccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC-----ccc-cCEEEEecCCc
Q 001096 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG-----AER-ACAAAITLDTP 1084 (1158)
Q Consensus 1012 vVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag-----I~~-A~~VIi~t~dd 1084 (1158)
++|.|. |.+|..+++.|.+.|++|.++.++++... ..+..++.+|..|++.|+++= ++. ++.++.+.++.
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 456665 99999999999999999999999987542 357888899999999998752 245 78887666542
Q ss_pred h----hhHHHHHHHHhhCCCceEEEEec-C--------hhhHHHHHHC-CCCee-ecCCcHH
Q 001096 1085 G----ANYRTVWALSKYFPNVKTFVRAH-D--------IDHGLNLEKA-GATAV-VPETLEP 1131 (1158)
Q Consensus 1085 ~----~Nl~i~l~ar~l~p~~~IIara~-d--------~e~~~~L~~a-GAd~V-I~p~~~a 1131 (1158)
. .-..+...+++.+-+ ++|.... . ......++.. |.+.+ ++|....
T Consensus 79 ~~~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~~f~ 139 (285)
T TIGR03649 79 PDLAPPMIKFIDFARSKGVR-RFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPTWFM 139 (285)
T ss_pred CChhHHHHHHHHHHHHcCCC-EEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEeccHHh
Confidence 1 112344556666533 4433321 0 0112445565 77764 5565433
No 106
>PLN02494 adenosylhomocysteinase
Probab=93.23 E-value=0.22 Score=60.31 Aligned_cols=100 Identities=18% Similarity=0.130 Sum_probs=68.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.+.++|+|+|++|+.+++.++..|.+|+++|.|+.+...+...|+.++. +.++ +..+|.++.++++. ++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~--------leEa-l~~ADVVI~tTGt~--~v 322 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLT--------LEDV-VSEADIFVTTTGNK--DI 322 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeecc--------HHHH-HhhCCEEEECCCCc--cc
Confidence 4579999999999999999999999999999999887667777876541 2222 34689988877654 33
Q ss_pred HHHHHHHhhCCCceEEEEec--ChhhHHHHHHC
Q 001096 1089 RTVWALSKYFPNVKTFVRAH--DIDHGLNLEKA 1119 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~--d~e~~~~L~~a 1119 (1158)
..........++..++-..+ +.-+..-|.++
T Consensus 323 I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 323 IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred hHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 33444555666655544444 23344444443
No 107
>PRK04972 putative transporter; Provisional
Probab=93.23 E-value=0.89 Score=56.78 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHh
Q 001096 601 ASLFDVLWLLLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~R-l~glP~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr 679 (1158)
++++.+++.+.+++++|.+--+ + ++-...|-+++|+++|..+.. ....+.++|+.+++|.+|++--+.-+..
T Consensus 12 ~~~~~lf~~i~lG~~lG~i~~~~~-~LG~~~g~L~vgl~~g~~~~~------~~~~~~~~gl~lF~~~vG~~~Gp~F~~~ 84 (558)
T PRK04972 12 NYILLLFVVLALGLCLGKLRLGSI-QLGNSIGVLVVSLLLGQQHFS------INTDALNLGFMLFIFCVGVEAGPNFFSI 84 (558)
T ss_pred CChHHHHHHHHHHHhhhceEEeeE-ecCcchHHHHHHHHHHhCCCC------CChHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3445555555555555433221 2 344556999999999986543 2344568999999999999998876654
Q ss_pred chh---hHHHHHHHHHHHHHHHHHHHHHHHhCCChHH
Q 001096 680 MKK---YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPA 713 (1158)
Q Consensus 680 ~~k---~il~Lai~gvllt~iivglll~~llGls~~~ 713 (1158)
.++ +...++++-++++. ++++++.+++++++..
T Consensus 85 l~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 120 (558)
T PRK04972 85 FFRDGKNYLMLALVMVGSAL-VIALGLGKLFGWDIGL 120 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHH
Confidence 444 44445544444443 3455566678888653
No 108
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.22 E-value=3.7 Score=53.49 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=40.2
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001096 267 DGLLLAAENDIKECQANLANCETELRR-------LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLL 332 (1158)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ 332 (1158)
+.|+.-|-+||+..|..|++-++|.+. ...+..||.+.|..|.-++.+--.+|..||+.|-.+-.-
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~ 1655 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQ 1655 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 346666666777777777766666554 445566666666666666666666666666655544433
No 109
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.15 E-value=0.21 Score=59.67 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=53.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
.+.++|+|+|++|+.++..++..|.+|+++|.|+.+...+...|+.+.. . .+ + ++++|.+|.++++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--l--ee----a-l~~aDVVItaTG~~ 261 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMT--M--EE----A-AKIGDIFITATGNK 261 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCC--H--HH----H-HhcCCEEEECCCCH
Confidence 4579999999999999999999999999999999887767777775431 1 22 2 35789988888753
No 110
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.00 E-value=0.18 Score=60.68 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=65.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.+.++|+|+|++|+.++..|+..|.+|+++|.|+.+...+...|+.+. + ++++ ++.+|.+|.++++. ++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-----~---l~ea-l~~aDVVI~aTG~~--~v 280 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-----T---MEEA-AELGDIFVTATGNK--DV 280 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-----C---HHHH-HhCCCEEEECCCCH--HH
Confidence 456999999999999999999999999999999988766666676543 1 1222 34799998888664 22
Q ss_pred HHHHHHHhhCCCceEEE--EecChhhHHHHHHC
Q 001096 1089 RTVWALSKYFPNVKTFV--RAHDIDHGLNLEKA 1119 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIa--ra~d~e~~~~L~~a 1119 (1158)
.-....+...+...++. +.+++-+...|++.
T Consensus 281 I~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~ 313 (425)
T PRK05476 281 ITAEHMEAMKDGAILANIGHFDNEIDVAALEEL 313 (425)
T ss_pred HHHHHHhcCCCCCEEEEcCCCCCccChHHHhhc
Confidence 22233444444433322 33333344445443
No 111
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=92.95 E-value=1.3 Score=51.45 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHh
Q 001096 602 SLFDVLWLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1158)
Q Consensus 602 ~Ll~i~lLLl~a~ilg~Ll~Rl~glP--~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr 679 (1158)
.+..+.+++.++.+.+.+++|+ |+| .++|-++++.++...+.. +......+..++.+++-..+|..++...++.
T Consensus 153 ~~~~l~~l~~~~~~g~~l~~~l-~iPa~~llGpml~~a~~~~~~~~---~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~ 228 (318)
T PF05145_consen 153 SWLWLALLALAALAGGLLARRL-RIPAPWLLGPMLVSAILNLFGGP---SFSLPPWLVNAAQVLIGASIGSRFTRETLRE 228 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 4566777888899999999998 887 567877777777654221 2234567888888899999999999999987
Q ss_pred chhhHHHH--HHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 001096 680 MKKYVFGL--GSAQVLVTAVVVGLVAHFVSGLPGPASIVI 717 (1158)
Q Consensus 680 ~~k~il~L--ai~gvllt~iivglll~~llGls~~~Alll 717 (1158)
..+..... .+...++..++.+++++.+.|+++..+++-
T Consensus 229 ~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La 268 (318)
T PF05145_consen 229 LRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA 268 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77644322 222223333456667777888888777663
No 112
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.85 E-value=0.31 Score=59.14 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=68.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.+.++|+|+|++|+.+++.++..|..|+++|.|+.+...+...|+.+. + +.++ ++.+|.|++++++. ++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-----~---leel-l~~ADIVI~atGt~--~i 322 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-----T---LEDV-VETADIFVTATGNK--DI 322 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-----c---HHHH-HhcCCEEEECCCcc--cc
Confidence 457999999999999999999999999999999887755555666543 1 2222 45799999887653 33
Q ss_pred HHHHHHHhhCCCceEEEEecCh--hhHHHHHHCC
Q 001096 1089 RTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAG 1120 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~d~--e~~~~L~~aG 1120 (1158)
.-...+....|...++-..+.. ....-|+..+
T Consensus 323 I~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 323 ITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP 356 (476)
T ss_pred cCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC
Confidence 3345566666765554444432 2334455544
No 113
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=92.82 E-value=0.82 Score=52.07 Aligned_cols=105 Identities=20% Similarity=0.120 Sum_probs=69.7
Q ss_pred ccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHHH--
Q 001096 1014 LCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV-- 1091 (1158)
Q Consensus 1014 IiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~-- 1091 (1158)
++|.|.+|..+++.|.+.|++|++.|+++++.+.+.+.|... ..++... ++++|.||++++++..--.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~~~----~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQA----AASPAEA----AEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEEEEeCCChHHHHHHHcC
Confidence 589999999999999999999999999999999888777532 1122211 457899999999864322222
Q ss_pred -HHHH-hhCCCceEEEEec--Chhh----HHHHHHCCCCeeecC
Q 001096 1092 -WALS-KYFPNVKTFVRAH--DIDH----GLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1092 -l~ar-~l~p~~~IIara~--d~e~----~~~L~~aGAd~VI~p 1127 (1158)
..+. ...++ ++++-.. +++. .+.+++.|++.|-.|
T Consensus 73 ~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP 115 (288)
T TIGR01692 73 DEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP 115 (288)
T ss_pred cchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence 1222 33333 3444333 3333 345566788876655
No 114
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=92.80 E-value=28 Score=42.02 Aligned_cols=318 Identities=13% Similarity=0.146 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh---hcccc---cccccCc--hhHH------HHHHHHHHHHHH
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGIL---IGPYG---LSIIRHV--HGTK------AIAEFGVVFLLF 666 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGIL---LGP~g---Lgli~~~--~~l~------~LaeLGLi~LLF 666 (1158)
+.+-.++++++++.+++++=+|+ |-+=-|+=.|.+ ++|+. .|++++. +... -+.++.+..+.-
T Consensus 29 ~m~g~~a~~~v~G~~l~~IG~ri---Pi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~ 105 (414)
T PF03390_consen 29 DMIGGFAVMMVLGFLLGEIGDRI---PILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIV 105 (414)
T ss_pred chHHHHHHHHHHHHHHHHHHhhC---hhhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 33456677778888888888876 333333434433 34443 3444432 1111 223333333333
Q ss_pred HHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhcc------ccCcHHHHHHHH-HhcCCC
Q 001096 667 NIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGL------ALSSTAVVLQVL-QERGES 739 (1158)
Q Consensus 667 ~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiL------s~TS~aVVv~iL-~el~ll 739 (1158)
-.=+.+|.+.|.|...+.+...+.+++..+ +++.+...++|.++..+++.-++= ..-..|... +. .-.+..
T Consensus 106 GSILgm~RklLika~~r~~p~il~g~~~a~-~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~-~Ya~~~g~~ 183 (414)
T PF03390_consen 106 GSILGMNRKLLIKAFARFIPPILGGVIGAF-LLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQ-IYAEALGQD 183 (414)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHH-HHHHHhCCC
Confidence 333589999999988887777777766554 466677778899887766542211 111111111 11 122222
Q ss_pred CchhhHHHHHHHhhhhhHHHHHHHHHHHHhcCC--CCCCCcHH----------------HHHHHHHHHHHHHHHHHHHHH
Q 001096 740 TSRHGRATFSVLLFQDLAVVVLLILIPLISPNS--SKGGVGFQ----------------AIAEALGVAAVKAAVAITAII 801 (1158)
Q Consensus 740 ~s~~GrlaLs~sllnDi~aIvll~ll~~la~~~--s~g~~~~~----------------~i~~~L~l~~l~iil~ivl~~ 801 (1158)
...+-..++...++.++++|+.-.++.-+.... -+|+..+. .-...++ ..+++
T Consensus 184 ~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g---------~Glll 254 (414)
T PF03390_consen 184 AEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMG---------AGLLL 254 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHH---------HHHHH
Confidence 333444455667777777777776664442211 00100000 0001111 11111
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccchhHHHHHhHHhH----HHHH
Q 001096 802 AGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPY----RGLL 877 (1158)
Q Consensus 802 lig~~llr~ll~~i~~~~~~el~~l~iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~----~~~f 877 (1158)
.+..|.+..++..+..- ..+ +..+....+...+|+ .++++++-...+ ..-+
T Consensus 255 a~~~y~~G~ll~~~i~i---h~~-----a~mIi~~~i~K~~~l-----------------vP~~~e~~a~~~~~f~~~~l 309 (414)
T PF03390_consen 255 ACSFYILGVLLSKLIGI---HAY-----AWMIILVAIVKAFGL-----------------VPESLEEGAKQWYKFFSKNL 309 (414)
T ss_pred HHHHHHHHHHHHHhcCC---cHH-----HHHHHHHHHHHHhCc-----------------CCHHHHHHHHHHHHHHHHHH
Confidence 12222222222222210 011 111122222333333 223344333332 3445
Q ss_pred HHHHHHHHhcc-cChhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHhcCCChhhHH-HHhhhccccchhh-HHHHHHHHh
Q 001096 878 LGLFFMTVGMS-IDPKLLLSNFPV-ITGALGLLIGGKTILVALVGRLFGVSVISAI-RTGLLLAPGGEFA-FVAFGEAVN 953 (1158)
Q Consensus 878 lPlFFvliGm~-idl~~L~~~~~~-vllllvl~ll~K~l~v~l~~~~~g~~~real-~lgL~La~rG~va-lvla~ia~~ 953 (1158)
.+...+-+|+. +|+..+...+.. -+++++..+++-.++.++..++.|+.+-|+- ..|+.|+.+|..+ +.+++.+..
T Consensus 310 t~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~R 389 (414)
T PF03390_consen 310 TWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANR 389 (414)
T ss_pred HHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhh
Confidence 66666778887 888888775322 2344455566777888999999998776654 5666777666443 444444444
Q ss_pred hccc
Q 001096 954 QGIM 957 (1158)
Q Consensus 954 ~giI 957 (1158)
..++
T Consensus 390 M~Lm 393 (414)
T PF03390_consen 390 MELM 393 (414)
T ss_pred cccc
Confidence 4443
No 115
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.68 E-value=4.4 Score=48.13 Aligned_cols=119 Identities=15% Similarity=0.138 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHH
Q 001096 610 LLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (1158)
Q Consensus 610 Ll~a~ilg~Ll~R-l~glP~VVG~ILaGILLGP~g--Lgli~-~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il 685 (1158)
+.++.++..+++. ...+|..++-+++|+++.... ++..+ +....+.++++.+-+++..+=..+++..+....-+.+
T Consensus 230 ~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Pll 309 (368)
T PF03616_consen 230 IGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLL 309 (368)
T ss_pred HHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444442 236899999999999997532 12222 4556789999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHH----HHhhccccCcHHH
Q 001096 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASI----VIGNGLALSSTAV 728 (1158)
Q Consensus 686 ~Lai~gvllt~iivglll~~llGls~~~Al----llGaiLs~TS~aV 728 (1158)
.+-+++++++.+...++.+.++|.+|..+. ..|..+.+|.+++
T Consensus 310 iil~~q~i~~~~f~~fv~fr~~gkdydaavm~~G~~G~glGatp~a~ 356 (368)
T PF03616_consen 310 IILAVQTILMVLFAYFVTFRVMGKDYDAAVMSAGFCGFGLGATPNAM 356 (368)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhCCChhHHHHhhhhhccCCCccHHHH
Confidence 887888887776555666777888875444 4556666666654
No 116
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.65 E-value=15 Score=49.51 Aligned_cols=14 Identities=57% Similarity=0.548 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 001096 152 ELRELLMNAMKELE 165 (1158)
Q Consensus 152 ~~~~~l~~~~~~~e 165 (1158)
+++.-++...+++.
T Consensus 709 ~l~~~~~~~~~~~~ 722 (1179)
T TIGR02168 709 ELEEELEQLRKELE 722 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 117
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.59 E-value=0.52 Score=54.51 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=86.4
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccC----CCHHHHHhcCccccCEEEEecCCchh
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDA----GSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDa----sd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
.+.|+|.|-+|...+-.|.+.|.+|+++-+++. .+++++.|+.+...+. .....-.......+|.+|+++.....
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccccH
Confidence 478999999999999999999966666665554 8889999988887666 22223333445589999999998877
Q ss_pred hHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCe
Q 001096 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATA 1123 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~ 1123 (1158)
+-.+........|+..|+.--|-..+.+.+++.....
T Consensus 81 ~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 81 EEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred HHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 7777777777788877888888888888887776555
No 118
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.52 E-value=3.8 Score=56.60 Aligned_cols=31 Identities=29% Similarity=0.154 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhhcCCC
Q 001096 335 QAVAFEIEATQRVNDAEIALQRAEKSLSNSS 365 (1158)
Q Consensus 335 ~av~~e~e~~~~~~~~~~~~~~~~~~~~~~~ 365 (1158)
+-=+-.-|.++.+++.|.-+..+++.++...
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555555555554443
No 119
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.50 E-value=1.2 Score=59.23 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=88.2
Q ss_pred ccccccccCCcccHHHHHHHHhhC-CCC-------------EEEEeCCchHHHHhhh-C-CCCEEEccCCCHHHHHhcCc
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSER-LIP-------------FVALDVRSDRVAIGRA-L-DLPVYFGDAGSREVLHKVGA 1071 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~-g~~-------------VvVID~d~~~v~~l~~-~-g~~vi~GDasd~e~L~~AgI 1071 (1158)
..++++|+|.|++|+.+++.|.+. +.+ |++.|.+++..+.+.+ . +...+..|.+|.+.|.++ +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~-v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY-V 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh-h
Confidence 356899999999999999999764 333 8999999988876644 2 677899999999988775 4
Q ss_pred cccCEEEEecCCchhhHHHHHHHHhhCCCceEEEEecChhhH----HHHHHCCCCeeecCCcHHHH
Q 001096 1072 ERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHG----LNLEKAGATAVVPETLEPSL 1133 (1158)
Q Consensus 1072 ~~A~~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIara~d~e~~----~~L~~aGAd~VI~p~~~a~~ 1133 (1158)
+++|+||++++.. .+..++..+-+... .++....+.+.. +..+++|+.-++.-...++.
T Consensus 647 ~~~DaVIsalP~~-~H~~VAkaAieaGk--Hvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPGi 709 (1042)
T PLN02819 647 SQVDVVISLLPAS-CHAVVAKACIELKK--HLVTASYVSEEMSALDSKAKEAGITILCEMGLDPGI 709 (1042)
T ss_pred cCCCEEEECCCch-hhHHHHHHHHHcCC--CEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHHH
Confidence 4699999999986 56777777777764 445444555544 34456676655544444443
No 120
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.22 Score=55.81 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=58.4
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC--c-----cccCEEEEe
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--A-----ERACAAAIT 1080 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag--I-----~~A~~VIi~ 1080 (1158)
+.++|.|. |.+|+.+++.|.++|++|++++++++..+.+.+.+..++.+|.+|++.++++- + .+.|.+|-.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~ 83 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNN 83 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEEC
Confidence 46888887 88999999999999999999999999888887788899999999998765431 1 245777654
No 121
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.45 E-value=0.61 Score=53.67 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=75.1
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-CCCEEEccCCCHHHHH-----hcCccccCEEEEecCC
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLH-----KVGAERACAAAITLDT 1083 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-g~~vi~GDasd~e~L~-----~AgI~~A~~VIi~t~d 1083 (1158)
-+++|+|.|-+|..++-.|.+.|.+|+++++..++.+..++. |+.+. .+.. ...+. ....+..|.||+++-.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~-~~~~~~~~~~~~~~~~~D~viv~vK~ 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV-EQGQ-ASLYAIPAETADAAEPIHRLLLACKA 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe-eCCc-ceeeccCCCCcccccccCEEEEECCH
Confidence 368999999999999999999999999999988888878754 55433 2211 11110 1123478999999977
Q ss_pred chhhHHHHHHHHhhCCCceEEEEecChhhHHHHHHC-CCCeee
Q 001096 1084 PGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKA-GATAVV 1125 (1158)
Q Consensus 1084 d~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~a-GAd~VI 1125 (1158)
....-.+......+.++..|+.--|-..+.+.+.+. +-+.|+
T Consensus 81 ~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~ 123 (305)
T PRK05708 81 YDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCI 123 (305)
T ss_pred HhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEE
Confidence 643333333444456777666666666666666543 544443
No 122
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.42 E-value=0.71 Score=51.02 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=56.1
Q ss_pred cccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh--CCCCEEEccCCC-HHHHHhcCccccCEEEEecC
Q 001096 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGS-REVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1009 ~~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~--~g~~vi~GDasd-~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
...++|+| .|.+|+.+++.|.+.|++|+++.+++++...... .++.++.||.++ .+.+.++-..++|.||..++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g 94 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATG 94 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence 35688888 5999999999999999999999888877654322 358889999998 45564432146888887764
No 123
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.35 E-value=6 Score=41.30 Aligned_cols=117 Identities=26% Similarity=0.344 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhCch--HHHHHHHHHHhhcccc-hhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhh---hhhHHH
Q 001096 830 LVILGTSLLTARAGLS--MALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN---FPVITG 903 (1158)
Q Consensus 830 ~v~l~~a~lae~lGls--~vLGAFvAGLiL~n~~-~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~---~~~vll 903 (1158)
.++...+++...+|++ .++|+++++.++.-.. ....+ -..+..+-..+.=+.+|.+++...+... ++..+.
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~---P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITL---PPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCC---CHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3444455566777775 7788888887766321 11011 1122334444455678999988777552 333444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHH
Q 001096 904 ALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1158)
Q Consensus 904 llvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~ 952 (1158)
..++.++.-.+..++..++.++++.+++. ..+|.|.-+..+.....
T Consensus 82 ~~~~~l~~~~~~~~~l~~~~~~~~~ta~L---a~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 82 STVLLLALSALLAWLLARLTGVDPLTAFL---ATSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCchHHHHHHHHHHh
Confidence 45555566777788888999999888763 35788877777665433
No 124
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.19 E-value=0.43 Score=50.97 Aligned_cols=76 Identities=16% Similarity=0.038 Sum_probs=61.0
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----CCCCEEEccCCCHHHHHhcCccccCEEEEecCC
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
.+++|+|. |.+|+.+++.|.+.|.+|++++++.++.+.+.+ .+.++...|..+.+.+.++ +.++|.||.+++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~diVi~at~~ 107 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAA-IKGADVVFAAGAA 107 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH-HhcCCEEEECCCC
Confidence 46889986 999999999999999999999999887765532 2567778888888776543 3578999999888
Q ss_pred chh
Q 001096 1084 PGA 1086 (1158)
Q Consensus 1084 d~~ 1086 (1158)
...
T Consensus 108 g~~ 110 (194)
T cd01078 108 GVE 110 (194)
T ss_pred Cce
Confidence 765
No 125
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.13 E-value=0.41 Score=54.27 Aligned_cols=68 Identities=12% Similarity=0.003 Sum_probs=52.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
++.|+|.|.+|..++..|.+.|++|.++|.+++..+.+.+.|.-.. ..++.+ .+.++|.||++++.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~--~~~~~~-----~~~~aDlVilavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDE--ASTDLS-----LLKDCDLVILALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCccc--ccCCHh-----HhcCCCEEEEcCCHHH
Confidence 4778999999999999999999999999999999888877664211 111222 2468999999998764
No 126
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.13 E-value=0.37 Score=57.84 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=55.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
.+.++|+|+|++|..++..++..|.+|+++|.|+.+...++..|+.++.- .+. +..+|.||.++++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~----~e~-----v~~aDVVI~atG~~ 268 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM----EEA-----VKEGDIFVTTTGNK 268 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccH----HHH-----HcCCCEEEECCCCH
Confidence 45799999999999999999999999999999999998888888865521 122 24689998888765
No 127
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.10 E-value=0.65 Score=55.90 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=55.4
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHh---cC-------ccccCEEEE
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK---VG-------AERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~---Ag-------I~~A~~VIi 1079 (1158)
.++.|+|.|.+|..++..|.+.|++|+++|.|+++++.+.....++. ++.-.+.+.+ .| +++||.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIV--EPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcC--CCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 35889999999999999999999999999999999998765444432 2222333321 11 347999999
Q ss_pred ecCCc
Q 001096 1080 TLDTP 1084 (1158)
Q Consensus 1080 ~t~dd 1084 (1158)
+++++
T Consensus 82 ~vptp 86 (415)
T PRK11064 82 AVPTP 86 (415)
T ss_pred EcCCC
Confidence 99986
No 128
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=92.05 E-value=12 Score=39.94 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCChhHHHhchhhHHH--HHH-HHHHHHHHHHHHHHH-HHhCCChHHHHHHhhccccCcH-HHHHHHH
Q 001096 659 FGVVFLLFNIGLELSVERLSSMKKYVFG--LGS-AQVLVTAVVVGLVAH-FVSGLPGPASIVIGNGLALSST-AVVLQVL 733 (1158)
Q Consensus 659 LGLi~LLF~aGLelDl~~Lrr~~k~il~--Lai-~gvllt~iivglll~-~llGls~~~AlllGaiLs~TS~-aVVv~iL 733 (1158)
+.+.++||..|++++++++++..|+... .++ .++++.. .+++.+. .+++.++. +.+|.++...+| +....+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~P-lla~~l~~~~~~~~~~--~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMP-LLAFGLAWLLLPLSPA--LALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHH-HHHHHHH-HHTT--HH--HHHHHHHHHHS-B-THHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHH--HHHHHHHHhcCCcHHHHHHH
Confidence 4678899999999999999977654332 222 2333322 2344333 45555443 444444443333 3344444
Q ss_pred HhcCCCCchhhHHHHHHHhhhhhHHHHHH
Q 001096 734 QERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1158)
Q Consensus 734 ~el~ll~s~~GrlaLs~sllnDi~aIvll 762 (1158)
..+...+. .+..+...++.+.+.++.
T Consensus 79 t~l~~Gd~---~ls~~lt~istll~~~~~ 104 (187)
T PF01758_consen 79 TYLAGGDV---ALSVSLTLISTLLAPFLM 104 (187)
T ss_dssp HHHTT--H---HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCc---ccccceeeHHHHHHHHHH
Confidence 44432122 233344556666665555
No 129
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.04 E-value=1.7 Score=54.38 Aligned_cols=106 Identities=17% Similarity=0.267 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhhccccc-ccc---cCchhHHHHHHHHHHHHHHHHHhcCChhHH---HhchhhHHHHHHHHHHHHHHHHH
Q 001096 628 PVLGYLAAGILIGPYGL-SII---RHVHGTKAIAEFGVVFLLFNIGLELSVERL---SSMKKYVFGLGSAQVLVTAVVVG 700 (1158)
Q Consensus 628 ~VVG~ILaGILLGP~gL-gli---~~~~~l~~LaeLGLi~LLF~aGLelDl~~L---rr~~k~il~Lai~gvllt~iivg 700 (1158)
...|-+++|+++|..+- +.. -+.....++.++|+.++++.+|++--...+ ++.+.+.+.++++-++++.++..
T Consensus 417 ~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~ 496 (562)
T TIGR03802 417 TGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITM 496 (562)
T ss_pred hhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34688999999987421 111 122344579999999999999998877644 44445555555555555555555
Q ss_pred HHHHHHhCCChHHHHHHhh-ccccCcHHHHHHHHHh
Q 001096 701 LVAHFVSGLPGPASIVIGN-GLALSSTAVVLQVLQE 735 (1158)
Q Consensus 701 lll~~llGls~~~AlllGa-iLs~TS~aVVv~iL~e 735 (1158)
++.++++++++. ...|+ +=+.|+|+........
T Consensus 497 ~~~~~~~~~~~~--~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 497 LIGKYVLKYDPA--LLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHhCCCHH--HHHHHhhccCCCcHHHHHHHHh
Confidence 566678888765 33333 2456777766555543
No 130
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.03 E-value=2 Score=44.86 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhccccc-cccc---CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchh----hHHHHHHHHHHHHHHHHH
Q 001096 629 VLGYLAAGILIGPYGL-SIIR---HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK----YVFGLGSAQVLVTAVVVG 700 (1158)
Q Consensus 629 VVG~ILaGILLGP~gL-gli~---~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k----~il~Lai~gvllt~iivg 700 (1158)
..|-+++|+++|..+- |.+. +......+.++|+.++++.+|++--..-+...++ ..+.++.+-++++.+++.
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 6688999999987431 1111 2345678999999999999999988765554333 233344444445555566
Q ss_pred HHHHHHhCCChHHHHHHhhc-cccCcHHHHHHHHHhc
Q 001096 701 LVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQER 736 (1158)
Q Consensus 701 lll~~llGls~~~AlllGai-Ls~TS~aVVv~iL~el 736 (1158)
++.++++++++. ...|.+ =+.|+|+..-...+..
T Consensus 104 ~~~~~~~~~~~~--~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 104 VALIKLLRINYA--LTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHhCCCHH--HHHHHHhccccChHHHHHHHHHh
Confidence 677778898864 333332 3567777665555433
No 131
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.03 E-value=0.58 Score=54.27 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=66.1
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCC----------CHHHHHhcCccccCEEEE
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAG----------SREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDas----------d~e~L~~AgI~~A~~VIi 1079 (1158)
.++.|+|.|.+|..++..|.+.|++|+++|+++. .+.+++.|..+...+.. -....+ .+..+|.|++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~vil 79 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA--ALATADLVLV 79 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChh--hccCCCEEEE
Confidence 3589999999999999999999999999998653 46666666554321110 001112 2468999999
Q ss_pred ecCCchhhHHHHHHHHhh-CCCceEEEEecChhhHHHHHH
Q 001096 1080 TLDTPGANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1080 ~t~dd~~Nl~i~l~ar~l-~p~~~IIara~d~e~~~~L~~ 1118 (1158)
++..+.. ..++..+... .++..|+.-.+.....+.+++
T Consensus 80 ~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 80 TVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred EecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 9987753 3333444433 444444444444454455544
No 132
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.99 E-value=0.35 Score=55.45 Aligned_cols=93 Identities=11% Similarity=-0.003 Sum_probs=61.1
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEE-cc---------CCCHHHHHhcCccccCEEEEe
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF-GD---------AGSREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~-GD---------asd~e~L~~AgI~~A~~VIi~ 1080 (1158)
++.|+|.|.+|..++..|.+.|++|.++|+++++++.+++.+..... ++ ..+++ + -++++|.||++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLA---E-ALADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHH---H-HHhCCCEEEEe
Confidence 47899999999999999999999999999999998888765432211 00 12222 1 13578999999
Q ss_pred cCCchhhHHHHHHHHhhCCCceEEEEe
Q 001096 1081 LDTPGANYRTVWALSKYFPNVKTFVRA 1107 (1158)
Q Consensus 1081 t~dd~~Nl~i~l~ar~l~p~~~IIara 1107 (1158)
+.++...-.+........|+..++...
T Consensus 79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 79 VPSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 998643322222222334554444443
No 133
>PRK03818 putative transporter; Validated
Probab=91.80 E-value=3.6 Score=51.49 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCch------HHHHHHHHHhhcccccc-cc---cCchhHHHHHHHHHHHHHHHHHhcCC
Q 001096 604 FDVLWLLLASVIFVPIFQKIPGGSP------VLGYLAAGILIGPYGLS-II---RHVHGTKAIAEFGVVFLLFNIGLELS 673 (1158)
Q Consensus 604 l~i~lLLl~a~ilg~Ll~Rl~glP~------VVG~ILaGILLGP~gLg-li---~~~~~l~~LaeLGLi~LLF~aGLelD 673 (1158)
..+.+.++++.++|.+--++++.|- .-|-+++|+++|...-- -+ -+......+.++|+.+++..+|++--
T Consensus 372 ~~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG 451 (552)
T PRK03818 372 LPVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSG 451 (552)
T ss_pred HHHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhh
Confidence 3445556666666666555555543 45799999999974321 11 12344678999999999999999887
Q ss_pred hhHHHh----chhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh-ccccCcHHHHHHHH
Q 001096 674 VERLSS----MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGN-GLALSSTAVVLQVL 733 (1158)
Q Consensus 674 l~~Lrr----~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGa-iLs~TS~aVVv~iL 733 (1158)
...+.. .+...+.++++-++++.++..++.++++++++. ..+|+ +=+.|+|+......
T Consensus 452 ~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 452 GDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMNYL--TLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhccCCCcHHHHHHh
Confidence 665543 344555566666666655444555788999865 33443 34567777654443
No 134
>PRK08017 oxidoreductase; Provisional
Probab=91.74 E-value=0.3 Score=53.47 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=51.8
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHh
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK 1068 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~ 1068 (1158)
+.++|.|. |.+|+.+++.|.++|++|+++++++++.+.+++.+...+.+|.++++.++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHH
Confidence 35888987 999999999999999999999999988877777788899999999877644
No 135
>PLN02688 pyrroline-5-carboxylate reductase
Probab=91.68 E-value=1.1 Score=50.05 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=66.1
Q ss_pred ccccCCcccHHHHHHHHhhCCC----CEEEE-eCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1012 IILCGFGRVGQIIAQLLSERLI----PFVAL-DVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~----~VvVI-D~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
+-++|.|.+|..+++.|.+.|+ ++++. ++++++.+.+.+.|..+. .+... + ++++|.||++++ +..
T Consensus 3 I~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~----~~~~e---~-~~~aDvVil~v~-~~~ 73 (266)
T PLN02688 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA----ASNTE---V-VKSSDVIILAVK-PQV 73 (266)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe----CChHH---H-HhcCCEEEEEEC-cHH
Confidence 6789999999999999999887 88888 999998888877776442 22221 1 347899999995 433
Q ss_pred hHHHHHHHHhh-CCCceEEEEe-cChhhHHHHHHCCCCeee
Q 001096 1087 NYRTVWALSKY-FPNVKTFVRA-HDIDHGLNLEKAGATAVV 1125 (1158)
Q Consensus 1087 Nl~i~l~ar~l-~p~~~IIara-~d~e~~~~L~~aGAd~VI 1125 (1158)
...+...++.. .|+ ++++.. ........-+..|...++
T Consensus 74 ~~~vl~~l~~~~~~~-~~iIs~~~g~~~~~l~~~~~~~~vv 113 (266)
T PLN02688 74 VKDVLTELRPLLSKD-KLLVSVAAGITLADLQEWAGGRRVV 113 (266)
T ss_pred HHHHHHHHHhhcCCC-CEEEEecCCCcHHHHHHHcCCCCEE
Confidence 33343344333 344 444444 333333333445554444
No 136
>COG2985 Predicted permease [General function prediction only]
Probab=91.67 E-value=1.6 Score=52.71 Aligned_cols=124 Identities=21% Similarity=0.334 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCC-Cc-----hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChh---HHHhc
Q 001096 610 LLASVIFVPIFQKIPG-GS-----PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVE---RLSSM 680 (1158)
Q Consensus 610 Ll~a~ilg~Ll~Rl~g-lP-----~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~---~Lrr~ 680 (1158)
+++...++..+.|+ | .- .+.|-+++|.+++.+++.+..+ .+.+ ++|++++.+.+|++--+. .+|+.
T Consensus 13 Lvvvl~lgl~~gkI-r~fG~gigg~l~g~L~Vgl~l~~~~~~i~~~--~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~ 87 (544)
T COG2985 13 LFVVLALGLGFGKI-RGFGLGIGGVLFGVLFVGLFLGQYGFTINTD--MLHF--ELGLILFVYTIGLEAGPGFFSSFRKS 87 (544)
T ss_pred HHHHHHHHhhhcee-EEeccccccchhhHhHHHHHhcccccccccc--hhhh--hhhhhHhhhhhhheecccHhHHHHHh
Confidence 33344445555555 2 11 2446666666777665554322 2222 999999999999998776 45566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChH--HHHHHhhccccCcHHHHHHHHHhcCCC
Q 001096 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGP--ASIVIGNGLALSSTAVVLQVLQERGES 739 (1158)
Q Consensus 681 ~k~il~Lai~gvllt~iivglll~~llGls~~--~AlllGaiLs~TS~aVVv~iL~el~ll 739 (1158)
+++...++++- +++...++++++.+++++.. ...+-|+.-+....+.+..++++.+..
T Consensus 88 Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 88 GLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHHHHHHhhccc
Confidence 66666666554 33334556667777887754 333444433333334577788888763
No 137
>PRK09903 putative transporter YfdV; Provisional
Probab=91.65 E-value=31 Score=39.93 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhc--ccchhHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001096 846 MALGAFLAGLLLA--ETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF 923 (1158)
Q Consensus 846 ~vLGAFvAGLiL~--n~~~~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~ 923 (1158)
|.+-+.++|+++. +-+...-+.+.++.+.+...|+-.+.+|+.+....+...+. .....++.++.-++.++.....+
T Consensus 174 P~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~~~ 252 (314)
T PRK09903 174 PVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGMAC 252 (314)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444333 22344566777777888889999999999886554322222 22333344555566666666666
Q ss_pred CCChhhHHHHhhh--ccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHHHHhh
Q 001096 924 GVSVISAIRTGLL--LAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1158)
Q Consensus 924 g~~~real~lgL~--La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPlL~~~ 982 (1158)
+++..... .... ..|-+....++ +.+.|.-.+.....+.+..+++.+..|++...
T Consensus 253 ~l~~~~~~-v~vl~aa~P~a~~~~i~---A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 253 HLNSEHLQ-MMVLAGALPPAFSGIII---ASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred CCCcHHHH-HHHHHHcccHHHHHHHH---HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77543322 2222 23444443333 44455433334444555566677777877654
No 138
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.62 E-value=1.3 Score=50.47 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=70.9
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
++-|+|.|.+|..++..|.+.|++|++.|+++++.+.+.+.|..+. .+.+.+ ++++|.|+++++++...-.+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~----~~~~e~----~~~~d~vi~~vp~~~~~~~v 75 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETA----STAKAV----AEQCDVIITMLPNSPHVKEV 75 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeec----CCHHHH----HhcCCEEEEeCCCHHHHHHH
Confidence 5788999999999999999999999999999999888877665321 222222 24799999999876432222
Q ss_pred HH----HHHhhCCCceEEEEec--Chhh----HHHHHHCCCCeeecC
Q 001096 1091 VW----ALSKYFPNVKTFVRAH--DIDH----GLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1091 ~l----~ar~l~p~~~IIara~--d~e~----~~~L~~aGAd~VI~p 1127 (1158)
.. .+....++ .+|+-.. ++.. .+.+.+.|+..+-.|
T Consensus 76 ~~~~~~~~~~~~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 76 ALGENGIIEGAKPG-TVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred HcCcchHhhcCCCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 21 22333343 5555443 3322 334455587766555
No 139
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.61 E-value=1.1 Score=51.14 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=70.2
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHHH
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~ 1091 (1158)
+-|+|.|.+|..++..|.+.|++|+++|+++++.+.+.+.|.... .+++ ++ ++++|.|+++.+++..-..+.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~~~---~~-~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTA----ETAR---QV-TEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCccc----CCHH---HH-HhcCCEEEEecCCHHHHHHHH
Confidence 568899999999999999999999999999999988887765321 2322 11 347999999998763322221
Q ss_pred ---H-HHHhhCCCceEEEEecC--h----hhHHHHHHCCCCeeecC
Q 001096 1092 ---W-ALSKYFPNVKTFVRAHD--I----DHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1092 ---l-~ar~l~p~~~IIara~d--~----e~~~~L~~aGAd~VI~p 1127 (1158)
. .+....|. .+++-..+ + +..+.+++.|+..+-.|
T Consensus 74 ~~~~~~~~~~~~g-~iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 74 FGENGIIEGAKPG-KTLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred cCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 1 12223343 55554432 2 23344566687766655
No 140
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=91.54 E-value=0.28 Score=56.95 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=56.4
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
-+.+||||||+.|+-++..|+-.|-+|+|.|.||-+.-.+.-+|+.|.. +.+| ++.+|.+|.+|++-
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~--------m~~A-a~~gDifiT~TGnk 275 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKTGDIFVTATGNK 275 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEE--------hHHh-hhcCCEEEEccCCc
Confidence 3568999999999999999999999999999999999888889999987 2222 34678888888773
No 141
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.48 E-value=16 Score=50.67 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=60.4
Q ss_pred ceeecCCCcc----ccccCCCCCccccccchhhhcccccCCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001096 110 LAFIDGNGRN----VEFSENGDGPEANSLGEEERETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1158)
Q Consensus 110 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a 185 (1158)
=+||+.+||+ +.+. .....+.--|..-++.. -..-+++|.+-|..-..+++...-.....++..+++..-.
T Consensus 705 ~~~v~~dG~~r~G~l~G~--~~k~~a~~IG~~aR~~~---R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 705 HTWIDVDGRFRLGVLRGA--WAKPAAEYIGAAARERA---RLRRIAELDARLAAVDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred CeeECCCCceeeeeeecc--cCCcchhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999993 3322 22444444444443211 1223677777777777777776666666666665555443
Q ss_pred Hhchh--HHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001096 186 IALKD--EAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1158)
Q Consensus 186 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1158)
=++-+ ...-|+..+.. .-.+-..|.+.+..++-.+.-|+.+++.|...+..
T Consensus 780 ~~~Ps~~dL~~A~~~l~~-------A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~ 832 (1353)
T TIGR02680 780 AGAPSDRSLRAAHRRAAE-------AERQAESAERELARAARKAAAAAAAWKQARRELER 832 (1353)
T ss_pred HhCCCchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 22233333332 22222333344444444444444444444444443
No 142
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.46 E-value=0.41 Score=57.66 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=58.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCc-hHH----HHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRV----AIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~-~~v----~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
.+.++|+|.|+.|..+++.|.+.|++|+++|.+. +.+ +.+...|..++.+|..+. ....+|.||..++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~d~vv~~~g~ 78 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE------FLEGVDLVVVSPGV 78 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh------HhhcCCEEEECCCC
Confidence 3568999999999999999999999999999985 323 445566889999998872 23578999988877
Q ss_pred chhhH
Q 001096 1084 PGANY 1088 (1158)
Q Consensus 1084 d~~Nl 1088 (1158)
...|-
T Consensus 79 ~~~~~ 83 (450)
T PRK14106 79 PLDSP 83 (450)
T ss_pred CCCCH
Confidence 65554
No 143
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=91.34 E-value=9.4 Score=46.26 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001096 176 EKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQ 246 (1158)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 246 (1158)
+.||+|++.-+ +++..-=|++| +-.+++++.-|..-+.-||.|++.|.++|.+-+.
T Consensus 215 edA~~ia~aLL---~~sE~~VN~Ls------------~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn 270 (434)
T PRK15178 215 KQAEFFAQRIL---SFAEQHVNTVS------------ARMQKERILWLENDVKSAQENLGAARLELLKIQH 270 (434)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888744 45555555555 4557788888999999999999999999988653
No 144
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.34 E-value=14 Score=49.93 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001096 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1158)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~ 315 (1158)
.+...++++...+..+..++.++..++.++.++++++.++++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l 341 (1164)
T TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566555555555555555555444433
No 145
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.32 E-value=0.18 Score=54.09 Aligned_cols=129 Identities=18% Similarity=0.143 Sum_probs=69.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC--------------ccccCE
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--------------AERACA 1076 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag--------------I~~A~~ 1076 (1158)
++.|+|.|.+|...+-.|.+.|++|+.+|.|+++++.+.+-..++ .++.-.+.+++.. +.++|+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~--~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPI--YEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS---CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccc--cccchhhhhccccccccchhhhhhhhhhhccce
Confidence 467899999999999999999999999999999999887654444 3555556655332 567999
Q ss_pred EEEecCCchh-----hH----H-HHHHHHhhCCCceEEEEecC-h-----hhHHHHHHCC-----CCeeecCCcHHHHHH
Q 001096 1077 AAITLDTPGA-----NY----R-TVWALSKYFPNVKTFVRAHD-I-----DHGLNLEKAG-----ATAVVPETLEPSLQL 1135 (1158)
Q Consensus 1077 VIi~t~dd~~-----Nl----~-i~l~ar~l~p~~~IIara~d-~-----e~~~~L~~aG-----Ad~VI~p~~~a~~~L 1135 (1158)
++++.+.+.. ++ . +-..++.+.++.-||.+..= + .....+++.+ .+-+++|++..--..
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a 159 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRA 159 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSH
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCc
Confidence 9999876521 11 1 12233344554344444432 1 2334555544 477888888764333
Q ss_pred HHHHHH
Q 001096 1136 AAAVLA 1141 (1158)
Q Consensus 1136 A~~vl~ 1141 (1158)
.+....
T Consensus 160 ~~d~~~ 165 (185)
T PF03721_consen 160 IEDFRN 165 (185)
T ss_dssp HHHHHS
T ss_pred chhccC
Confidence 333333
No 146
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.27 E-value=0.53 Score=51.55 Aligned_cols=84 Identities=15% Similarity=0.016 Sum_probs=65.6
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCc-hHHHHhhhC-CCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~-~~v~~l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
...++|+|.|.++.+=++.|.+.|-.++++-.+. +....+.+. +...+. +.-+++.+ .++..|+++|+|...
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~-----~~~~lviaAt~d~~l 85 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDL-----DDAFLVIAATDDEEL 85 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhh-----cCceEEEEeCCCHHH
Confidence 3469999999999999999999999999998887 555555444 333333 44444443 349999999999999
Q ss_pred hHHHHHHHHhhC
Q 001096 1087 NYRTVWALSKYF 1098 (1158)
Q Consensus 1087 Nl~i~l~ar~l~ 1098 (1158)
|-.+...+++.+
T Consensus 86 n~~i~~~a~~~~ 97 (210)
T COG1648 86 NERIAKAARERR 97 (210)
T ss_pred HHHHHHHHHHhC
Confidence 999999999964
No 147
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=91.08 E-value=1.1 Score=49.78 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=74.6
Q ss_pred cccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHHHH
Q 001096 1013 ILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVW 1092 (1158)
Q Consensus 1013 VIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l 1092 (1158)
=.+|.|++|..+++.|...|++|++.|.|++.++.+.+.| ..|-.+-.+.+.+++..++-.+.+...|...++. -.
T Consensus 4 GmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g---a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 4 GMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG---ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred eeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC---CccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 3589999999999999999999999999999999999888 4444444777788888877777776666644332 22
Q ss_pred HHHhhCCCceEEEEecChhhH------HHHHHCCCCeee
Q 001096 1093 ALSKYFPNVKTFVRAHDIDHG------LNLEKAGATAVV 1125 (1158)
Q Consensus 1093 ~ar~l~p~~~IIara~d~e~~------~~L~~aGAd~VI 1125 (1158)
.+-.+++. .||.---|..+. +.+.+.|+..+-
T Consensus 80 la~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~flD 117 (300)
T COG1023 80 LAPLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117 (300)
T ss_pred HHhhcCCC-CEEEECCccchHHHHHHHHHHHhcCCeEEe
Confidence 23334443 455544443332 335556766553
No 148
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.98 E-value=11 Score=51.54 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=12.3
Q ss_pred HHHHHHhhCCCceEEEEecChh
Q 001096 1090 TVWALSKYFPNVKTFVRAHDID 1111 (1158)
Q Consensus 1090 i~l~ar~l~p~~~IIara~d~e 1111 (1158)
++..+++...+..-|+.++...
T Consensus 1109 ~~~~i~e~s~~sQFIvIThr~~ 1130 (1163)
T COG1196 1109 VARLIKEMSKETQFIVITHRKG 1130 (1163)
T ss_pred HHHHHHHhCcCCeEEEEEcChH
Confidence 4555555555555555555543
No 149
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.96 E-value=0.63 Score=43.65 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=56.5
Q ss_pred ccccCCcccHHHHHHHHhhCC---CCEEEE-eCCchHHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1012 IILCGFGRVGQIIAQLLSERL---IPFVAL-DVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g---~~VvVI-D~d~~~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
+.++|.|++|..+++.|.+.| .++.++ ++++++.+.+.+ .+..+... ++.+.++ ++|.|++++.....
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~advvilav~p~~~ 74 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD--DNEEAAQ-----EADVVILAVKPQQL 74 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE--EHHHHHH-----HTSEEEE-S-GGGH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccC--ChHHhhc-----cCCEEEEEECHHHH
Confidence 467899999999999999999 899977 999999987744 45444442 2444444 68899998877643
Q ss_pred hHHHHHHHHhhCCCceEEE
Q 001096 1087 NYRTVWALSKYFPNVKTFV 1105 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIa 1105 (1158)
-- ++..+....++ ++++
T Consensus 75 ~~-v~~~i~~~~~~-~~vi 91 (96)
T PF03807_consen 75 PE-VLSEIPHLLKG-KLVI 91 (96)
T ss_dssp HH-HHHHHHHHHTT-SEEE
T ss_pred HH-HHHHHhhccCC-CEEE
Confidence 32 22222444444 4444
No 150
>PRK06182 short chain dehydrogenase; Validated
Probab=90.85 E-value=0.41 Score=53.28 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=59.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC------ccccCEEEEecC
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag------I~~A~~VIi~t~ 1082 (1158)
+.++|.|. |.+|+.+++.|.++|++|+++++++++.+.+...+..++.+|.+|++.++++- ..+.|++|...+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45788885 88999999999999999999999999887776678899999999999876541 125788776654
No 151
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.57 E-value=1.3 Score=55.18 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=57.5
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh---------------CCCCEEEccCCCHHHHHhcCccc
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---------------LDLPVYFGDAGSREVLHKVGAER 1073 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~---------------~g~~vi~GDasd~e~L~~AgI~~ 1073 (1158)
+.++|.|. |.+|+.+++.|.+.|++|++++++.++...+.+ .++.++.||.+|.+.++++ +.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a-Lgg 159 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA-LGN 159 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH-hcC
Confidence 45777775 899999999999999999999999887754321 1356889999999988764 457
Q ss_pred cCEEEEecCC
Q 001096 1074 ACAAAITLDT 1083 (1158)
Q Consensus 1074 A~~VIi~t~d 1083 (1158)
+|+||...+.
T Consensus 160 iDiVVn~AG~ 169 (576)
T PLN03209 160 ASVVICCIGA 169 (576)
T ss_pred CCEEEEcccc
Confidence 8888887653
No 152
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.56 E-value=0.32 Score=56.01 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=64.4
Q ss_pred cccccCCcccHHHHHHHHhhCC--CCEEEEeCCchHHHHhhhC--------CCC-EEEccCCCHHHHHhcCccccCEEEE
Q 001096 1011 HIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRAL--------DLP-VYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g--~~VvVID~d~~~v~~l~~~--------g~~-vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
.+.|+|.|.+|..++..|...| .+++++|.++++.+....+ +.. .+.+ .+.+ .+.+||.||+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~~-----~l~~aDIVIi 74 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDYS-----DCKDADIVVI 74 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCHH-----HhCCCCEEEE
Confidence 5789999999999999999988 5799999999987644221 222 1222 2222 2468999999
Q ss_pred ecCCc-----------hhhHH----HHHHHHhhCCCceEEEEec
Q 001096 1080 TLDTP-----------GANYR----TVWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1080 ~t~dd-----------~~Nl~----i~l~ar~l~p~~~IIara~ 1108 (1158)
+++.+ ..|.. ++..+++.+|+..+++-.|
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99874 23433 4567888899887666664
No 153
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.52 E-value=15 Score=48.59 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 001096 666 FNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1158)
Q Consensus 666 F~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el 736 (1158)
|.-|+.++++==+++||.+.-|+...=.++.+++-|++|.+-..|+..-==+=++|=.=...+|...++++
T Consensus 1175 FseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkEr 1245 (1293)
T KOG0996|consen 1175 FSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKER 1245 (1293)
T ss_pred cccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHh
Confidence 55677777777778888877776666555555555666665444432211122233333344455555543
No 154
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.50 E-value=25 Score=45.00 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=45.8
Q ss_pred CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001096 261 SDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1158)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~ 315 (1158)
++..+-.+.+..++.++.+|++.+.+++.++.+++.+++++++++.++.+.-++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667788889999999999999999999999999999999998876665543
No 155
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.47 E-value=0.62 Score=53.89 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=64.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCE--EEccCCC-----HHHHHhcCccccCEEEEecCC
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPV--YFGDAGS-----REVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~v--i~GDasd-----~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
++.|+|.|.+|..++..|.+.|++|.+++++++.++..++.+.+. +.|.... ...+.++-.+.+|.+|+++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 378999999999999999999999999999999888776643222 1121110 011112112478999999988
Q ss_pred chhhHHHHHHHH--hhCCCceEEEEecChhh
Q 001096 1084 PGANYRTVWALS--KYFPNVKTFVRAHDIDH 1112 (1158)
Q Consensus 1084 d~~Nl~i~l~ar--~l~p~~~IIara~d~e~ 1112 (1158)
....- ++..++ .+.++..++...+-.++
T Consensus 82 ~~~~~-~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 82 QQLRT-ICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred HHHHH-HHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 74333 223333 34556567666655444
No 156
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.33 E-value=0.8 Score=53.72 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=65.8
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCc---------------------hHHH----HhhhC----CCCEEEc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS---------------------DRVA----IGRAL----DLPVYFG 1058 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~---------------------~~v~----~l~~~----g~~vi~G 1058 (1158)
+.+|+|+|.|.+|..++..|...|+ .+++||.|. .+++ ++++. .+..+..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 4679999999999999999999999 899999984 1222 22222 2345556
Q ss_pred cCCCHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1059 Dasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
+.+.. .+.+. ++++|.||.++++...+..+...+++.+
T Consensus 104 ~~~~~-~~~~~-~~~~DlVid~~Dn~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 104 DVTAE-ELEEL-VTGVDLIIDATDNFETRFIVNDAAQKYG 141 (339)
T ss_pred cCCHH-HHHHH-HcCCCEEEEcCCCHHHHHHHHHHHHHhC
Confidence 66543 33333 6789999999999998888888888775
No 157
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.26 E-value=12 Score=51.04 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=40.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001096 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (1158)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~ 328 (1158)
+....+++++..++.++.+|+.+++.++.+.+++++++..++..-.+.+......++....
T Consensus 835 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~ 895 (1163)
T COG1196 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895 (1163)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777777777777777777777777777777777666666555555444433
No 158
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.24 E-value=14 Score=41.86 Aligned_cols=103 Identities=24% Similarity=0.242 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchh-------HHHHHHHhhhHhHHHHHHHHhHH------------H
Q 001096 154 RELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKD-------EAANAWNNVNVTLDMVHEIVNEE------------C 214 (1158)
Q Consensus 154 ~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~e------------~ 214 (1158)
+..++...++++.-..--.-+.+|++++++.+-.+++ +|..--.+|....+.|++++++= .
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 123 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSE 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 3333333333333333333444555555555555555 44444445555666666665432 1
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhccCCCCCCCCcc
Q 001096 215 IAKEAVHKATMAL------------SLAEARLQVAIESLQDVKQEDDYPEGSTE 256 (1158)
Q Consensus 215 ~a~~~~~~~~~~~------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1158)
.-.++...|.++| ..|+..+.-|.+-|...+....+|...++
T Consensus 124 ~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~ 177 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENE 177 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhH
Confidence 1223334444443 35777777777777777666666665443
No 159
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.18 E-value=0.41 Score=54.24 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=55.8
Q ss_pred ccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1012 vVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
++|.| .|-+|..+++.|.+.|++|++++++++......+.+..++.||.+|++.+.++ ++.++.||-+.
T Consensus 3 vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~d~vi~~a 72 (328)
T TIGR03466 3 VLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-VAGCRALFHVA 72 (328)
T ss_pred EEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH-HhCCCEEEEec
Confidence 66777 49999999999999999999999987765545555788999999999888765 34567777554
No 160
>PRK04972 putative transporter; Provisional
Probab=90.12 E-value=4.1 Score=51.08 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhcccc-ccccc---CchhHHHHHHHHHHHHHHHHHhcCChh
Q 001096 604 FDVLWLLLASVIFVPIFQKIPGGS----PVLGYLAAGILIGPYG-LSIIR---HVHGTKAIAEFGVVFLLFNIGLELSVE 675 (1158)
Q Consensus 604 l~i~lLLl~a~ilg~Ll~Rl~glP----~VVG~ILaGILLGP~g-Lgli~---~~~~l~~LaeLGLi~LLF~aGLelDl~ 675 (1158)
+.+++-++++.++|.+--++++.| .--|-+++|+++|... .+... +.....++.++|+.+++..+|++--..
T Consensus 384 ~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~ 463 (558)
T PRK04972 384 LAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSG 463 (558)
T ss_pred HHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 445555566666666655554444 2458999999999632 11111 233456899999999999999987654
Q ss_pred ---HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh-ccccCcHHHHHHHHHh
Q 001096 676 ---RLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGN-GLALSSTAVVLQVLQE 735 (1158)
Q Consensus 676 ---~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGa-iLs~TS~aVVv~iL~e 735 (1158)
.+++.+...+.++.+-++++.++..++.++++++++. .++|+ +=+.|+|+........
T Consensus 464 f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 464 INNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 4445556666677776777776666777789999876 34443 3455776665555543
No 161
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.12 E-value=1.7 Score=53.33 Aligned_cols=113 Identities=14% Similarity=0.047 Sum_probs=73.0
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC----CCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~----g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
++-++|.|.+|..++..|.++|++|++.|+++++++.+.+. |..+ .+ ..+++.+-+ .+++++.|+++..++..
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i-~~-~~s~~e~v~-~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRV-KG-YHTLEELVN-SLKKPRKVILLIKAGEA 79 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcc-ee-cCCHHHHHh-cCCCCCEEEEEeCChHH
Confidence 46789999999999999999999999999999998877653 4332 12 223333211 23468888888766654
Q ss_pred hHHHHHHHH-hhCCCceEEEEecCh------hhHHHHHHCCCCeeecC
Q 001096 1087 NYRTVWALS-KYFPNVKTFVRAHDI------DHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1087 Nl~i~l~ar-~l~p~~~IIara~d~------e~~~~L~~aGAd~VI~p 1127 (1158)
--.+...+. .+.|+ .||+-..+. .....+.+.|+..+=.|
T Consensus 80 v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 80 VDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred HHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 333333333 34444 555555442 24455666787765544
No 162
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=90.11 E-value=1.4 Score=50.59 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=70.2
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHHH
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~ 1091 (1158)
+-++|.|.+|..+++.|.+.|+++++.|.++. .+.+.+.|.... .++..+ ++++|.|++++.|+..-..+.
T Consensus 3 Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~----~s~~~~----~~~advVi~~v~~~~~v~~v~ 73 (292)
T PRK15059 3 LGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSV----ETARQV----TEASDIIFIMVPDTPQVEEVL 73 (292)
T ss_pred EEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeec----CCHHHH----HhcCCEEEEeCCChHHHHHHH
Confidence 67899999999999999999999999999875 455655564322 233322 357899999999884333322
Q ss_pred H----HHHhhCCCceEEEEec--Chh----hHHHHHHCCCCeeecC
Q 001096 1092 W----ALSKYFPNVKTFVRAH--DID----HGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1092 l----~ar~l~p~~~IIara~--d~e----~~~~L~~aGAd~VI~p 1127 (1158)
. .+....|. ++++-.. +++ ..+.+.+.|+..+-.|
T Consensus 74 ~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP 118 (292)
T PRK15059 74 FGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP 118 (292)
T ss_pred cCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 1 12223333 5555554 333 3356677899877766
No 163
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=90.00 E-value=7.4 Score=46.23 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=82.1
Q ss_pred HHHHHHHHHHh-cCCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHH
Q 001096 612 ASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGL 687 (1158)
Q Consensus 612 ~a~ilg~Ll~R-l~glP~VVG~ILaGILLGP~g--Lgli~-~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~L 687 (1158)
++..+..+++. -..+|..++.+++|+++.... ++..+ ..+..+.++++.+-+++=.+=+.+.+-.+-..+-+.+.+
T Consensus 233 vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~vi 312 (404)
T COG0786 233 VGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVI 312 (404)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34444444442 126899999999999998531 22222 345678899999998888887888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHH----HhhccccCcHHHH
Q 001096 688 GSAQVLVTAVVVGLVAHFVSGLPGPASIV----IGNGLALSSTAVV 729 (1158)
Q Consensus 688 ai~gvllt~iivglll~~llGls~~~All----lGaiLs~TS~aVV 729 (1158)
-.+++++..+..-++.+.++|-++..+.+ .|..+.+|.++++
T Consensus 313 L~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAia 358 (404)
T COG0786 313 LAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIA 358 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHH
Confidence 77887776655556667788888776665 4555666666543
No 164
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.99 E-value=55 Score=44.23 Aligned_cols=8 Identities=50% Similarity=0.771 Sum_probs=4.9
Q ss_pred CCCEEEEe
Q 001096 1032 LIPFVALD 1039 (1158)
Q Consensus 1032 g~~VvVID 1039 (1158)
..|+.++|
T Consensus 1096 ~~~~~~lD 1103 (1164)
T TIGR02169 1096 PSPFYAFD 1103 (1164)
T ss_pred CCCcEEec
Confidence 44666666
No 165
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.92 E-value=1.3 Score=50.69 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=70.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
++-++|.|.+|..++..|.+.|++|++.|+++++.+.+.+.|... ..++..+ ++++|.|+++++++..--.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~----~~s~~~~----~~~aDvVi~~vp~~~~~~~v 74 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATP----AASPAQA----AAGAEFVITMLPNGDLVRSV 74 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcc----cCCHHHH----HhcCCEEEEecCCHHHHHHH
Confidence 467899999999999999999999999999999998887776432 1222211 35789999999987432222
Q ss_pred HH----HHHhhCCCceEEEEec--ChhhH----HHHHHCCCCeeecC
Q 001096 1091 VW----ALSKYFPNVKTFVRAH--DIDHG----LNLEKAGATAVVPE 1127 (1158)
Q Consensus 1091 ~l----~ar~l~p~~~IIara~--d~e~~----~~L~~aGAd~VI~p 1127 (1158)
.. ......++ ++++... ++... ..+.+.|+..+--|
T Consensus 75 l~~~~~i~~~l~~g-~lvid~sT~~p~~~~~l~~~l~~~g~~~ldap 120 (296)
T PRK15461 75 LFGENGVCEGLSRD-ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVP 120 (296)
T ss_pred HcCcccHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEcc
Confidence 21 12222333 4444443 33333 55566787766444
No 166
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.92 E-value=0.61 Score=53.06 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=51.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-------CCCEEEccCCCH------------HHHHhcCc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-------DLPVYFGDAGSR------------EVLHKVGA 1071 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-------g~~vi~GDasd~------------e~L~~AgI 1071 (1158)
++.|+|.|.+|..++..|.+.|++|+++|.|++.++.+.+. +. -.|..+.. ..+ +..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGV--ARGKLTEAARQAALARLSYSLDL-KAAV 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHhCeEEeCcH-HHhh
Confidence 57899999999999999999999999999999998776421 11 01111111 011 1235
Q ss_pred cccCEEEEecCCch
Q 001096 1072 ERACAAAITLDTPG 1085 (1158)
Q Consensus 1072 ~~A~~VIi~t~dd~ 1085 (1158)
++||.||.+++++.
T Consensus 80 ~~aD~Vi~avpe~~ 93 (288)
T PRK09260 80 ADADLVIEAVPEKL 93 (288)
T ss_pred cCCCEEEEeccCCH
Confidence 78999999998874
No 167
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.78 E-value=0.47 Score=48.01 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=58.4
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCch-HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~-~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
+-++-|+|.|++|..+++.|.+.|++|+.+-.... ..+++... .++.. ...+.+. +++||.++++++||...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~-----~~~~~-~~~~~~~-~~~aDlv~iavpDdaI~ 82 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF-----IGAGA-ILDLEEI-LRDADLVFIAVPDDAIA 82 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC-------TT------TTGG-GCC-SEEEE-S-CCHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc-----ccccc-ccccccc-cccCCEEEEEechHHHH
Confidence 55789999999999999999999999999875544 44444432 11111 1112222 46899999999999433
Q ss_pred HHHHHHHHhh--CCCceEEEEecChh---hHHHHHHCCC
Q 001096 1088 YRTVWALSKY--FPNVKTFVRAHDID---HGLNLEKAGA 1121 (1158)
Q Consensus 1088 l~i~l~ar~l--~p~~~IIara~d~e---~~~~L~~aGA 1121 (1158)
- ++..+... ...-++++.+.=.. --+-+++.|+
T Consensus 83 ~-va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 83 E-VAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp H-HHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-
T ss_pred H-HHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCC
Confidence 2 33333332 22238888887443 3344455565
No 168
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.77 E-value=16 Score=40.83 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001096 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1158)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1158)
|+....=|..+.+.++...--...+|.+.+...+..-.|.++...|....+.+-....++..+=.+...-...|--.+..
T Consensus 59 L~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 59 LEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666666666666667777777777777777777766666666655444444444433333333444444444
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001096 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1158)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~ 309 (1158)
+|.+...-.+-+..+......++.+.+ +-.+-...-.+.|+..+..|.+-|.+......+...||+++++|.
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~--------~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEE--------KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333222222221111 001112334445566666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhhHHH
Q 001096 310 EVAEKAQMNALKAEED 325 (1158)
Q Consensus 310 ~~~~~~~~~~~~a~~~ 325 (1158)
+-..+.+..-.+...+
T Consensus 211 ~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555444444333
No 169
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=89.71 E-value=2.2 Score=52.30 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=72.3
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC---CCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~---g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
+-++|.|.+|..+++.|.+.|++|++.|+++++++.+.+. |-.+. ...+++.+-+ .+++++.|+++..++..--
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~--~~~s~~e~v~-~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIV--GAYSIEEFVQ-SLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCce--ecCCHHHHHh-hcCCCCEEEEECCCcHHHH
Confidence 5689999999999999999999999999999999888765 21111 1234443322 2457898888888864333
Q ss_pred HHHHHHHh-hCCCceEEEEecCh------hhHHHHHHCCCCeeecC
Q 001096 1089 RTVWALSK-YFPNVKTFVRAHDI------DHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1089 ~i~l~ar~-l~p~~~IIara~d~------e~~~~L~~aGAd~VI~p 1127 (1158)
.+...+.. +.++ .||+-..+. .....+.+.|+..|=.|
T Consensus 79 ~Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi~fvdap 123 (467)
T TIGR00873 79 AVINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGILFVGSG 123 (467)
T ss_pred HHHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCCEEEcCC
Confidence 33333333 3444 566655442 23455566677655444
No 170
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=89.62 E-value=1.1 Score=51.80 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=64.5
Q ss_pred cccccccCCcccHHHHHHHHhhCC-CCEEEEeCCchHHHHh-hhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g-~~VvVID~d~~~v~~l-~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
...++|+|.|.+|+.+++.|...| .+|+++++++++.+.+ .+.|..++. .+.+.++ +.++|.||.+|+.+..
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~-----~~~~~~~-l~~aDvVi~at~~~~~ 251 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVP-----LDELLEL-LNEADVVISATGAPHY 251 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEe-----HHHHHHH-HhcCCEEEECCCCCch
Confidence 456999999999999999999866 5799999999887554 444553332 2234333 5679999999998876
Q ss_pred -hHHHHHHHHhhCCCceEEEEecChhhH
Q 001096 1087 -NYRTVWALSKYFPNVKTFVRAHDIDHG 1113 (1158)
Q Consensus 1087 -Nl~i~l~ar~l~p~~~IIara~d~e~~ 1113 (1158)
+.... ..+......++++-...+.+.
T Consensus 252 ~~~~~~-~~~~~~~~~~~viDlavPrdi 278 (311)
T cd05213 252 AKIVER-AMKKRSGKPRLIVDLAVPRDI 278 (311)
T ss_pred HHHHHH-HHhhCCCCCeEEEEeCCCCCC
Confidence 22222 222222133566666655443
No 171
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=89.52 E-value=6.3 Score=45.60 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=71.4
Q ss_pred HHhcCCCchHHHHHHHHHhhccccccccc-CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHH
Q 001096 620 FQKIPGGSPVLGYLAAGILIGPYGLSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVV 698 (1158)
Q Consensus 620 l~Rl~glP~VVG~ILaGILLGP~gLgli~-~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~ii 698 (1158)
++++.+-|.+++. ++|+++...++.+-. -...++.+++....+-||..|+.++...+++.++..+...+.-.++..+
T Consensus 176 ~~~~~~nP~iia~-i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~- 253 (321)
T TIGR00946 176 WKKLIKFPPLWAP-LLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPA- 253 (321)
T ss_pred HHHHHhCCChHHH-HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHH-
Confidence 4444366777765 556777654443211 1346789999999999999999999988877766666665665554433
Q ss_pred HHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 001096 699 VGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1158)
Q Consensus 699 vglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~el 736 (1158)
+++.+..+++.+... .-...+.+...+++...++.+.
T Consensus 254 i~~~~~~~~~l~~~~-~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 254 VMAGISKLIGLRGLE-LSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHHHHhCCChHH-HHHHHHHHcCChhhHHHHHHHH
Confidence 334444566776432 3334445556666666666443
No 172
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.48 E-value=2.7 Score=48.52 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=66.9
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEE--ccCCCH--HHHHh-cCccccCEEEEecCCc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF--GDAGSR--EVLHK-VGAERACAAAITLDTP 1084 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~--GDasd~--e~L~~-AgI~~A~~VIi~t~dd 1084 (1158)
.++.|+|.|.+|..++-.|.+.|++|+++.+++. +..+..|..+.. |+.... ..... .....+|.||+++...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 3689999999999999999999999999999863 445555654432 221000 00000 0235789999998876
Q ss_pred hhhHHHHHHHHh-hCCCceEEEEecChhhHHHHHH
Q 001096 1085 GANYRTVWALSK-YFPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1085 ~~Nl~i~l~ar~-l~p~~~IIara~d~e~~~~L~~ 1118 (1158)
..- .+...++. +.|+..|+...|-..+.+.+.+
T Consensus 84 ~~~-~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~ 117 (313)
T PRK06249 84 ANA-LLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE 117 (313)
T ss_pred ChH-hHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 432 23333333 4566666666666666666654
No 173
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=89.40 E-value=53 Score=38.99 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-----c-----cc-------------CchhHHHHHHHHH---
Q 001096 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-----I-----IR-------------HVHGTKAIAEFGV--- 661 (1158)
Q Consensus 608 lLLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLg-----l-----i~-------------~~~~l~~LaeLGL--- 661 (1158)
+.++++.++-++.-+-.-=|-++.-|-.|+++.+..+. . +. +...+..+-++|+
T Consensus 26 vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~gi~~g 105 (399)
T TIGR03136 26 ALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFTFSNS 105 (399)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHHHhcc
Confidence 33344444444443331457777788888888754321 0 01 1123444444443
Q ss_pred ---HHHHHHHHhcCChhHHHhchhhHHHHH-HHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHH
Q 001096 662 ---VFLLFNIGLELSVERLSSMKKYVFGLG-SAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVV 729 (1158)
Q Consensus 662 ---i~LLF~aGLelDl~~Lrr~~k~il~La-i~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVV 729 (1158)
.++++-+|-=+|+.-+..+.+..+..+ ..++-+ + +++.....+|++...|--+|.+=.+=.|.++
T Consensus 106 l~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~Gi-F--~t~~~A~~lGF~~~eAAsIgIIGgADGPTaI 174 (399)
T TIGR03136 106 LVACILFFGIGAMSDISFILARPWASITVALFAEMGT-F--ATLVIGYYCGLTPGEAAAVGTIGGADGPMVL 174 (399)
T ss_pred cHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhH-H--HHHHHHHHcCCCHHHhhHHhhcccCCccHHH
Confidence 345556788899999998888776633 333222 1 2223334569999888888887665555443
No 174
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=89.25 E-value=52 Score=38.65 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-ccc------CchhHHHHHHHHH------HHHHHHHHhcCChh
Q 001096 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-IIR------HVHGTKAIAEFGV------VFLLFNIGLELSVE 675 (1158)
Q Consensus 609 LLl~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLg-li~------~~~~l~~LaeLGL------i~LLF~aGLelDl~ 675 (1158)
+++...+++.-.+|- --|-++.-|-.|+++.+..+. ..+ ....+..+.++|+ .++++-+|-=+|++
T Consensus 8 i~vg~~liYLai~k~-~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmtDFg 86 (360)
T PF03977_consen 8 ILVGFLLIYLAIKKK-YEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMTDFG 86 (360)
T ss_pred HHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHHhhH
Confidence 333344444444443 457778888899999854322 211 1234444444443 35566688999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHH
Q 001096 676 RLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV 728 (1158)
Q Consensus 676 ~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aV 728 (1158)
-+..+.|..+.-+..++-+ + +++....++|++..+|.-+|.+=.+=.|.+
T Consensus 87 pllanP~~~llGaaAQ~Gi-f--~t~~~A~~lGf~~~eAAsIgIIGgADGPts 136 (360)
T PF03977_consen 87 PLLANPKTLLLGAAAQFGI-F--ATFLGAILLGFTPKEAASIGIIGGADGPTS 136 (360)
T ss_pred HHHhCHHHHHHHHHHHHhH-H--HHHHHHHHhCCCHHHhhHhhhcccCCCcHH
Confidence 9999888755433333322 2 333444566999998888888766554443
No 175
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=89.24 E-value=0.24 Score=51.93 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=49.2
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCch-HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~-~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
+.+.|+|||..|..-+.-|++.|.+|++-.+... ..++++++|+.+.. ..++ +++||.|+++++|..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~--------~~eA-v~~aDvV~~L~PD~~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMS--------VAEA-VKKADVVMLLLPDEV 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCE--------HHHH-HHC-SEEEE-S-HHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeecc--------HHHH-HhhCCEEEEeCChHH
Confidence 4688999999999999999999999998887765 78899999987752 2233 568999999999873
No 176
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.06 E-value=1.9 Score=49.57 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=62.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhh-----------hCCCCE------EEccCCCHHHHHhcCccc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-----------ALDLPV------YFGDAGSREVLHKVGAER 1073 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~-----------~~g~~v------i~GDasd~e~L~~AgI~~ 1073 (1158)
++.|+|.|.+|..++..|...|++|+++|.+++..+.+. +.|.-- ..+...-...+.++ +++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a-~~~ 82 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA-VAD 82 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh-hCC
Confidence 588999999999999999999999999999998776532 333200 00000000112221 457
Q ss_pred cCEEEEecCCch-hhHHHHHHHHhhCCCceEEEEecChhhHH
Q 001096 1074 ACAAAITLDTPG-ANYRTVWALSKYFPNVKTFVRAHDIDHGL 1114 (1158)
Q Consensus 1074 A~~VIi~t~dd~-~Nl~i~l~ar~l~p~~~IIara~d~e~~~ 1114 (1158)
++.|+.+++++. .+..+...+++..++-.+++.........
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~ 124 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLAS 124 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHH
Confidence 999999998874 33334444555555444555444433333
No 177
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=89.00 E-value=0.29 Score=53.66 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-----cCCCchHHHHHHHHHhhccccc--ccccCchhHHHHHHHHHHHHHHHHHhcCC
Q 001096 601 ASLFDVLWLLLASVIFVPIFQK-----IPGGSPVLGYLAAGILIGPYGL--SIIRHVHGTKAIAEFGVVFLLFNIGLELS 673 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~R-----l~glP~VVG~ILaGILLGP~gL--gli~~~~~l~~LaeLGLi~LLF~aGLelD 673 (1158)
..++.+.++...+...+++.+- ..++|+.+|++++|.++-...+ +.+....+...+..+.+.++.-..|++++
T Consensus 97 ~~l~~~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~~~~iv~s~l~t~a~~I~~ik~gLgt~ 176 (252)
T KOG3826|consen 97 GNLFGLIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAVCAPIVVSPLRTVALTIIKIKAGLGTL 176 (252)
T ss_pred cceEeeehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhceeeeeeehhhhhccchHHHHHhhhccc
Confidence 3345556666667777777762 2356779999999977754221 12222345567788889999999999999
Q ss_pred hhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHh
Q 001096 674 VERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQE 735 (1158)
Q Consensus 674 l~~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~aVVv~iL~e 735 (1158)
.+.+++....+..+++....+..-.-+...++++..+|.++++.|.+....+..+..+-...
T Consensus 177 ~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~~h 238 (252)
T KOG3826|consen 177 PRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDYQH 238 (252)
T ss_pred ccchhhhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccchh
Confidence 99999988888877776666555445566788889999999999999998888766555443
No 178
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=88.82 E-value=0.35 Score=58.18 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=57.6
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEE------EEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFV------ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~Vv------VID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
.+.++|+|+|.+|..-+.-|+..|++|+ +||.+++..+.+.+.|+.+ ++ +.++ +.+||+|+++++
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~~------~~Ea-~~~ADvVviLlP 106 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV--GT------YEEL-IPQADLVINLTP 106 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc--CC------HHHH-HHhCCEEEEcCC
Confidence 3569999999999999999999999999 8999999888888888854 22 3333 778999999999
Q ss_pred Cchhh
Q 001096 1083 TPGAN 1087 (1158)
Q Consensus 1083 dd~~N 1087 (1158)
|....
T Consensus 107 Dt~q~ 111 (487)
T PRK05225 107 DKQHS 111 (487)
T ss_pred hHHHH
Confidence 98533
No 179
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.80 E-value=0.92 Score=53.49 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=56.3
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
++.|+|.|.+|..++..|.+.|+++.+++.|++........+..++.--.++ +.+ -++++|.||++++.+. ...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~aDlVilavP~~~-~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAAD---LQR-AAAEADLIVLAVPVDA-TAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccC---HHH-HhcCCCEEEEeCCHHH-HHHH
Confidence 4788999999999999999999999999999887665554454433211122 222 2468999999999863 3344
Q ss_pred HHHHH
Q 001096 1091 VWALS 1095 (1158)
Q Consensus 1091 ~l~ar 1095 (1158)
...++
T Consensus 77 l~~l~ 81 (359)
T PRK06545 77 LAELA 81 (359)
T ss_pred HHHHh
Confidence 44444
No 180
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.70 E-value=1.3 Score=50.81 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=52.9
Q ss_pred ccccccCCcccHHHHHHHHhhCCC--CEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~--~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
.++.|+|.|.+|..++..|.+.|+ +|+++|.+++..+.+++.|.....- .+.+ + -++++|.||++++.+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~--~~~~---~-~~~~aDvViiavp~~~ 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT--TSAA---E-AVKGADLVILCVPVGA 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec--CCHH---H-HhcCCCEEEECCCHHH
Confidence 468999999999999999999885 8999999999888887776432111 1211 1 1357999999998864
No 181
>PLN02427 UDP-apiose/xylose synthase
Probab=88.68 E-value=0.9 Score=53.56 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=54.8
Q ss_pred cccccCC-cccHHHHHHHHhhC-CCCEEEEeCCchHHHHhhh-------CCCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1011 HIILCGF-GRVGQIIAQLLSER-LIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~-g~~VvVID~d~~~v~~l~~-------~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
.++|.|. |-+|..+++.|.++ +++|+++|.+.+....+.. .+++++.||..|++.+.++ ++++|+||=+.
T Consensus 16 ~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~-~~~~d~ViHlA 94 (386)
T PLN02427 16 TICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL-IKMADLTINLA 94 (386)
T ss_pred EEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-hhcCCEEEEcc
Confidence 5888885 99999999999998 5999999988776654432 2578999999999988775 34578876444
No 182
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.62 E-value=0.88 Score=54.55 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=51.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHH---------------HHhcCccccC
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREV---------------LHKVGAERAC 1075 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~---------------L~~AgI~~A~ 1075 (1158)
++.|+|.|.+|..++..|.+.|++|+++|.|+++++.+.+...++. ++.-.+. +.++ +++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~g~l~~~~~~~~~-~~~ad 78 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIY--EPGLDELLAKALAAGRLRATTDYEDA-IRDAD 78 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCC--CCCHHHHHHHhhhcCCeEEECCHHHH-HhhCC
Confidence 3678999999999999999999999999999999988764322211 1111111 1111 45789
Q ss_pred EEEEecCCch
Q 001096 1076 AAAITLDTPG 1085 (1158)
Q Consensus 1076 ~VIi~t~dd~ 1085 (1158)
.++++++++.
T Consensus 79 vvii~vpt~~ 88 (411)
T TIGR03026 79 VIIICVPTPL 88 (411)
T ss_pred EEEEEeCCCC
Confidence 9999998874
No 183
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.41 E-value=1.2 Score=54.29 Aligned_cols=72 Identities=21% Similarity=0.138 Sum_probs=56.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCch-----HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~-----~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
.++++|+|.|..|..+++.|.++|++|+++|.++. ..+.+++.|+.++.|+... ....+|.||+..+-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPEDTDLVVTSPGW 88 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCCCCEEEECCCc
Confidence 34799999999999999999999999999996542 2345677899999987554 23468998888866
Q ss_pred chhh
Q 001096 1084 PGAN 1087 (1158)
Q Consensus 1084 d~~N 1087 (1158)
+..|
T Consensus 89 ~~~~ 92 (480)
T PRK01438 89 RPDA 92 (480)
T ss_pred CCCC
Confidence 5433
No 184
>PRK09291 short chain dehydrogenase; Provisional
Probab=88.37 E-value=1 Score=49.27 Aligned_cols=73 Identities=18% Similarity=0.027 Sum_probs=57.1
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
+.++|.|. |.+|..+++.|.+.|++|++++++++....+.+ .++.++.+|.+|++.++++--...|.||-...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNAG 82 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECCC
Confidence 35777775 789999999999999999999998776554422 24678899999999998874447888877543
No 185
>PRK08507 prephenate dehydrogenase; Validated
Probab=88.36 E-value=0.91 Score=51.29 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=58.5
Q ss_pred cccccCCcccHHHHHHHHhhCCC--CEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~--~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
++.|+|.|.+|..++..|.+.|+ +|+++|.++++.+.+.+.|..... .+. .++ .++|.||++++.+...-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~---~~~---~~~--~~aD~Vilavp~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI---VSF---EEL--KKCDVIFLAIPVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc---CCH---HHH--hcCCEEEEeCcHHHHHH
Confidence 37789999999999999999885 688889999998888777653111 122 222 23999999998875333
Q ss_pred HHHHHHHhhCCCceEEEEe
Q 001096 1089 RTVWALSKYFPNVKTFVRA 1107 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara 1107 (1158)
.+ ..+....|+ .+|+-+
T Consensus 74 ~~-~~l~~l~~~-~iv~d~ 90 (275)
T PRK08507 74 IL-PKLLDIKEN-TTIIDL 90 (275)
T ss_pred HH-HHHhccCCC-CEEEEC
Confidence 22 233334444 344444
No 186
>PRK10637 cysG siroheme synthase; Provisional
Probab=88.22 E-value=1.5 Score=53.50 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=63.8
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCc-hHHHHhhhC-CCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~-~~v~~l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
..+++|+|.|+++.+=++.|.+.|-.|++|-++- +.+..+... .+..+..+... +. +++++.|+++|+|.+.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~-~d-----l~~~~lv~~at~d~~~ 85 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDE-SL-----LDTCWLAIAATDDDAV 85 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HH-----hCCCEEEEECCCCHHH
Confidence 4679999999999999999999999999996553 233344333 45555555533 22 4678999999999999
Q ss_pred hHHHHHHHHhhC
Q 001096 1087 NYRTVWALSKYF 1098 (1158)
Q Consensus 1087 Nl~i~l~ar~l~ 1098 (1158)
|-.+...+++.+
T Consensus 86 n~~i~~~a~~~~ 97 (457)
T PRK10637 86 NQRVSEAAEARR 97 (457)
T ss_pred hHHHHHHHHHcC
Confidence 999999998753
No 187
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.15 E-value=1.8 Score=51.48 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=54.5
Q ss_pred cccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHH------Hh--hhCCCCEEEccCCCHHHHHhcCcc---ccCEEE
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVA------IG--RALDLPVYFGDAGSREVLHKVGAE---RACAAA 1078 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~------~l--~~~g~~vi~GDasd~e~L~~AgI~---~A~~VI 1078 (1158)
.++|.|. |.+|+.+++.|.++|++|++++++++... .. ...+..++.||.+|++.++++--+ .+|+||
T Consensus 62 kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi 141 (390)
T PLN02657 62 TVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDVVV 141 (390)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcEEE
Confidence 4677775 89999999999999999999999875432 11 124788999999999999876222 588888
Q ss_pred Eec
Q 001096 1079 ITL 1081 (1158)
Q Consensus 1079 i~t 1081 (1158)
.+.
T Consensus 142 ~~a 144 (390)
T PLN02657 142 SCL 144 (390)
T ss_pred ECC
Confidence 654
No 188
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=88.08 E-value=3.3 Score=46.66 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=80.2
Q ss_pred cccccCC-cccHHHHHHHHhhC-CCCEE-EEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1011 HIILCGF-GRVGQIIAQLLSER-LIPFV-ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~-g~~Vv-VID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.+.|+|+ |++|+.+++.+.+. +.+++ ++|.+++........|+. ...|.+.+. +++|+||.++.-+ ..
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~----~~~dl~~ll----~~~DvVid~t~p~-~~ 73 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVA----ITDDLEAVL----ADADVLIDFTTPE-AT 73 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCcc----ccCCHHHhc----cCCCEEEECCCHH-HH
Confidence 4789998 99999999999764 56654 588887655433111221 123333332 2588887666433 33
Q ss_pred HHHHHHHHhhCCCceEEEEe--cChhhHHHHHH--CCCCeeecCCcHHHHHHHHHHHHhhhh
Q 001096 1088 YRTVWALSKYFPNVKTFVRA--HDIDHGLNLEK--AGATAVVPETLEPSLQLAAAVLAQVIH 1145 (1158)
Q Consensus 1088 l~i~l~ar~l~p~~~IIara--~d~e~~~~L~~--aGAd~VI~p~~~a~~~LA~~vl~~~i~ 1145 (1158)
...+..+.+.+. ++++-. .+.+..+.+.+ .++.-++.|+...+..+...++..+..
T Consensus 74 ~~~~~~al~~G~--~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa~ 133 (257)
T PRK00048 74 LENLEFALEHGK--PLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAAK 133 (257)
T ss_pred HHHHHHHHHcCC--CEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHHH
Confidence 555556666654 444332 25566666654 588999999999999999988888774
No 189
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=88.07 E-value=1.8 Score=50.29 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=48.6
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEe-CCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALD-VRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID-~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
.++.|+|+|.+|..+++.|...|+++++.+ .+++..+.+.+.|+.+ .+.. ++ +++||.|+++++++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~---ea-~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-----GTVE---EA-IPQADLIMNLLPDE 70 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-----CCHH---HH-HhcCCEEEEeCCcH
Confidence 458889999999999999999999887654 4445666666667643 1221 11 35789999999977
No 190
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.04 E-value=74 Score=44.36 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=22.1
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001096 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1158)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~ 306 (1158)
.+..+++++.+++..+..-+.++.+...++.++.+++.
T Consensus 348 ~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 348 AAADARQAIREAESRLEEERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666666666555543
No 191
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=88.03 E-value=0.97 Score=47.73 Aligned_cols=51 Identities=35% Similarity=0.446 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001096 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEE 324 (1158)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~ 324 (1158)
+.|+-+.++.+..-...|+.+|.+++++-|+-|+.||+++.+|+.+.|-+|
T Consensus 142 eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk~ 192 (192)
T COG5374 142 EADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192 (192)
T ss_pred hcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Confidence 345566677777777889999999999999999999999999999887653
No 192
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=87.94 E-value=63 Score=38.06 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhhcccch------hHHHHHhHHhHHHHHHHHHHHHHhcccChhhhhh--hhhhHHHHHHHHHHHHHHHH
Q 001096 845 SMALGAFLAGLLLAETEF------SLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS--NFPVITGALGLLIGGKTILV 916 (1158)
Q Consensus 845 s~vLGAFvAGLiL~n~~~------~~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~--~~~~vllllvl~ll~K~l~v 916 (1158)
+|.+=+.++|++++-.+. ..-+.+.+..+.+...|+-.+.+|+.+....... .+......+++.++.-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 566667777777765431 1455566666778889999999999886543322 22223334666667777777
Q ss_pred HHHHHhcCCChhhHHHHhh-hccccchhhHHHHHHHHhhccchhhhHHHHHHHHHHHHHhHHH
Q 001096 917 ALVGRLFGVSVISAIRTGL-LLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPW 978 (1158)
Q Consensus 917 ~l~~~~~g~~~real~lgL-~La~rG~valvla~ia~~~giIs~elfsiLvlvVVlS~IitPl 978 (1158)
+...++++++......+-+ ...|-+... ..++..++.-.+.....+++..+++.+..|+
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~~---~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~ 383 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAINS---FVIASLYGLDEEEASSIVFWSTLLSIPTLPL 383 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHHH---HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777765443222221 223444333 3333444544455555555555555555554
No 193
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.64 E-value=2.4 Score=49.97 Aligned_cols=72 Identities=17% Similarity=0.020 Sum_probs=53.5
Q ss_pred cccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1009 ~~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
+..++|.|. |-+|..+++.|.++|++|+++++...........+..++.||..+.+.+.++- .++|.||-+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~D~Vih~A 93 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVT-KGVDHVFNLA 93 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHH-hCCCEEEEcc
Confidence 456888887 99999999999999999999997543211111124578889999998887652 3578777665
No 194
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.52 E-value=25 Score=39.12 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=65.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHH
Q 001096 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVG 970 (1158)
Q Consensus 891 l~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVV 970 (1158)
...+..+|..++..+++..+.-++..++.++++|.+.. +-..+.||....-+.+....+.|-+++-....++++-+
T Consensus 83 ~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi 158 (230)
T COG1346 83 RHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGI 158 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcccccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44556677766666666667778888888999998742 23457899998888888888888887666666666666
Q ss_pred HHHHhHHHHHhhh
Q 001096 971 ISMALTPWLAAGG 983 (1158)
Q Consensus 971 lS~IitPlL~~~~ 983 (1158)
+..+++|.+.++.
T Consensus 159 ~Gavlg~~llk~~ 171 (230)
T COG1346 159 LGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHh
Confidence 7777788776654
No 195
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.45 E-value=2.1 Score=49.61 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=60.0
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEE--cc-----CCCHHHHHhcCccccCEEEEecCC
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF--GD-----AGSREVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~--GD-----asd~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
++.|+|.|.+|..++..|.+.|++|+++++++++.+.+...+.+..+ |. ..-...+.++ ++.+|.|++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~aD~Vi~~v~~ 84 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAGADFAVVAVPS 84 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcCCCEEEEECch
Confidence 58899999999999999999999999999999988777654211111 10 0001112221 3579999999988
Q ss_pred chhhHHHHHHHHhhCCCceEEEEec
Q 001096 1084 PGANYRTVWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1084 d~~Nl~i~l~ar~l~p~~~IIara~ 1108 (1158)
+.. -..++.+.|...++...+
T Consensus 85 ~~~----~~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 85 KAL----RETLAGLPRALGYVSCAK 105 (328)
T ss_pred HHH----HHHHHhcCcCCEEEEEee
Confidence 842 222344555544443333
No 196
>PRK05693 short chain dehydrogenase; Provisional
Probab=87.44 E-value=0.98 Score=50.34 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=58.2
Q ss_pred cccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhc------CccccCEEEEecC
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV------GAERACAAAITLD 1082 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~A------gI~~A~~VIi~t~ 1082 (1158)
.++|.|. |.+|+.+++.|.+.|+.|++++++++..+.+.+.+...+.+|.++++.++++ ...+.|.+|-..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4677775 7899999999999999999999999888777777888899999998877543 1235678777664
No 197
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.41 E-value=40 Score=42.08 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001096 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1158)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~ 345 (1158)
..|...-.|.+......+..|.|+.++.+-++.++....-+|... +|+-.|+||++
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL--------~aa~ke~eaaK 427 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL--------EAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 334444444444444444444555555554444444444444443 34566666654
No 198
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.39 E-value=0.64 Score=47.52 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=54.0
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHHH
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~ 1091 (1158)
.+|+|.|.+++.+++.....|++|+++|.+++..... -.+... ...+..+...++.-.+| ++|.+......+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~~~----~~~~~~--~~~~~~~~~~~~~~t~V-v~th~h~~D~~~L 73 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFPEA----DEVICI--PPDDILEDLEIDPNTAV-VMTHDHELDAEAL 73 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-TTS----SEEECS--HHHHHHHHC-S-TT-EE-E--S-CCCHHHHH
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccCCC----CccEec--ChHHHHhccCCCCCeEE-EEcCCchhHHHHH
Confidence 3789999999999999999999999999998854311 112222 23455577788888887 5666655555665
Q ss_pred HHHHhhCCCceEEEEecChh
Q 001096 1092 WALSKYFPNVKTFVRAHDID 1111 (1158)
Q Consensus 1092 l~ar~l~p~~~IIara~d~e 1111 (1158)
..+.+..+ .+|=+......
T Consensus 74 ~~~l~~~~-~YiG~lGS~~k 92 (136)
T PF13478_consen 74 EAALASPA-RYIGLLGSRRK 92 (136)
T ss_dssp HHHTTSS--SEEEESS-HHH
T ss_pred HHHHcCCC-CEEEeecCchH
Confidence 55555532 35444444333
No 199
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.27 E-value=4.3 Score=46.94 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001096 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSG 708 (1158)
Q Consensus 629 VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~llG 708 (1158)
.+--++.|+++|+.--++ ....+.=..+++.+..|..|..+|+..+.+.+...+.++++.++++.+ +++++..++|
T Consensus 169 lilpILiGmilGNld~~~---~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~-~~~~i~rllg 244 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDM---RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGF-FNIFADRLVG 244 (312)
T ss_pred HHHHHHHHHHHhccchhh---HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 445566777777731111 112222223488888999999999999999999988888887777764 4555555669
Q ss_pred CChHHHHHHh--hccccCcHHH
Q 001096 709 LPGPASIVIG--NGLALSSTAV 728 (1158)
Q Consensus 709 ls~~~AlllG--aiLs~TS~aV 728 (1158)
.+...++++| +--++..++.
T Consensus 245 ~~~~~g~li~stAGnAIcgpAA 266 (312)
T PRK12460 245 GTGIAGAAASSTAGNAVATPLA 266 (312)
T ss_pred CChhHHHHHHHHhhHHHHHHHH
Confidence 8888888888 4444444433
No 200
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=87.01 E-value=8.8 Score=45.17 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCch--HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChhHHHhch
Q 001096 604 FDVLWLLLASVIFVPIFQKIPGGSP--VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMK 681 (1158)
Q Consensus 604 l~i~lLLl~a~ilg~Ll~Rl~glP~--VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~ 681 (1158)
..+.+++.++.+.+.+.+++ |+|. +.+-++.|.++--.+ .........+..++-.++--.+|.++|...++...
T Consensus 188 ~~~~~l~~~~~~~g~l~~~l-r~Pa~~ll~~l~l~a~v~~~~---~~~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~ 263 (352)
T COG3180 188 LILLLLILAALLGGLLGKLL-RFPAPTLLGPLLLGAIVHFGG---GITIQLPAWLLAVAQALIGALIGSRFDRSILREAK 263 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhhccc---ceeeeCCHHHHHHHHHHHHHHHcccccHHHHHHhH
Confidence 33556666677777777776 7774 345555554443322 11334556777888889999999999999888776
Q ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 001096 682 KYVFG--LGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1158)
Q Consensus 682 k~il~--Lai~gvllt~iivglll~~llGls~~~All 716 (1158)
|.... +.++..++-.+.++.+++++.+.++..+++
T Consensus 264 r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L 300 (352)
T COG3180 264 RLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL 300 (352)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 64332 333333333445666777788999887766
No 201
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.90 E-value=15 Score=42.23 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001096 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1158)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1158)
...+..-+.+.+++++.+++.++-+|.+.+..-+--=+++..-..--.++.+ .|+.-+..|..+ .....++-.|
T Consensus 98 ~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~---~~~~~~~~e~~~---~~~~dL~~~L 171 (312)
T PF00038_consen 98 RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE---QIQSSVTVEVDQ---FRSSDLSAAL 171 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---T-------------------HHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---ccccccceeecc---cccccchhhh
Confidence 3445556677788888888888888888887766555554433221111111 111111111111 1222333334
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001096 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1158)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~ 309 (1158)
.+.|-|-...+-....+....++.-. .+-..-......++..+++|+++++..+.....+|..++.++..|.+.+..+.
T Consensus 172 ~eiR~~ye~~~~~~~~e~e~~y~~k~-~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 172 REIRAQYEEIAQKNREELEEWYQSKL-EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhhhccccc-ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 44333322111111000000000000 00000112245688899999999999999999999999999999999998775
Q ss_pred H
Q 001096 310 E 310 (1158)
Q Consensus 310 ~ 310 (1158)
.
T Consensus 251 ~ 251 (312)
T PF00038_consen 251 Q 251 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=86.90 E-value=7.3 Score=45.85 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHHhc-CChhHHHhchhhHH
Q 001096 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLE-LSVERLSSMKKYVF 685 (1158)
Q Consensus 613 a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~~------~~l~~LaeLGLi~LLF~aGLe-lDl~~Lrr~~k~il 685 (1158)
-++++.+++.+|++|+.+.+++.|+++-- +|++++. .+-+++..-....+++-.|+. +|++.+-+......
T Consensus 191 ~y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 191 LFMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 33445566677789999999999999975 5666542 222356665666677778886 89999988774333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH-hhccc
Q 001096 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVI-GNGLA 722 (1158)
Q Consensus 686 ~Lai~gvllt~iivglll~~llGls~~~Alll-GaiLs 722 (1158)
.+.++..++...+.++++..++|+-+.++-+. |.+.+
T Consensus 269 vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~ 306 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNS 306 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhcc
Confidence 33333334444456667777888866655444 43433
No 203
>COG2431 Predicted membrane protein [Function unknown]
Probab=86.88 E-value=2.9 Score=47.23 Aligned_cols=91 Identities=23% Similarity=0.411 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCC---hhHHH-hchhhHHHHHHHHHHHHHHHHHHHH
Q 001096 628 PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELS---VERLS-SMKKYVFGLGSAQVLVTAVVVGLVA 703 (1158)
Q Consensus 628 ~VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelD---l~~Lr-r~~k~il~Lai~gvllt~iivglll 703 (1158)
.+.++.+.|+++|-..-.. .+..+...+..+.+++|.+|.++. ....+ ..-|+.+.+++... ++.++.|.+.
T Consensus 108 k~~~~vl~g~~~G~l~~~~---~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~i-lssliGG~ia 183 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF---LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITL-LSSLIGGLIA 183 (297)
T ss_pred HHHHHHHHHHHHHHHhccc---ccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHH-HHHHHHHHHH
Confidence 4667888888888643332 233677889999999999999886 22111 12244555555544 3445677778
Q ss_pred HHHhCCChHHHHHHhhccc
Q 001096 704 HFVSGLPGPASIVIGNGLA 722 (1158)
Q Consensus 704 ~~llGls~~~AlllGaiLs 722 (1158)
.+++++++.+++.++..+.
T Consensus 184 a~~l~lpl~~~lAmasG~G 202 (297)
T COG2431 184 AFLLDLPLTTGLAMASGFG 202 (297)
T ss_pred HHHHhccHHHHHHHHhccc
Confidence 8888999888888766443
No 204
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.86 E-value=1.1 Score=48.34 Aligned_cols=72 Identities=10% Similarity=-0.023 Sum_probs=54.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----CCCCEEEccCCCHHHHHhcC------ccccCEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----~g~~vi~GDasd~e~L~~Ag------I~~A~~V 1077 (1158)
+.++|.|. |.+|..+++.|.++|++|++++++++....+.+ .+..++.+|.++++.++++= ....+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 86 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDVL 86 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 56778874 889999999999999999999999876554422 35678899999998765421 1367887
Q ss_pred EEec
Q 001096 1078 AITL 1081 (1158)
Q Consensus 1078 Ii~t 1081 (1158)
|-..
T Consensus 87 i~~a 90 (237)
T PRK07326 87 IANA 90 (237)
T ss_pred EECC
Confidence 7654
No 205
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.84 E-value=1.9 Score=52.38 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=60.4
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCch-----HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~-----~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
.++.|+|+|..|..+++.|.+.|+.|.+.|.++. ..+.+++.|+.++.|+.. ++.+ .++|.||...+=+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~-----~~~dlVV~Spgi~ 88 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY-LDKL-----DGFDVIFKTPSMR 88 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hHHh-----ccCCEEEECCCCC
Confidence 4699999999999999999999999999997653 234577789989888654 3333 4578777664444
Q ss_pred hhhHHHHHHHHhhCCCceEE
Q 001096 1085 GANYRTVWALSKYFPNVKTF 1104 (1158)
Q Consensus 1085 ~~Nl~i~l~ar~l~p~~~II 1104 (1158)
..| .....+++.+ ++|+
T Consensus 89 ~~~-p~~~~a~~~~--i~i~ 105 (458)
T PRK01710 89 IDS-PELVKAKEEG--AYIT 105 (458)
T ss_pred CCc-hHHHHHHHcC--CcEE
Confidence 333 3444555543 3444
No 206
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.82 E-value=0.63 Score=47.15 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=55.3
Q ss_pred cccccccCCcccHHHHHHHHhhCCCC-EEEEeCCchHHHHhhhC--CCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~-VvVID~d~~~v~~l~~~--g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
.++++|+|.|..|+.++..|...|.. +++++++.++.+.+.+. +..+-..+..+.. ..+.++|.||.+|+...
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhCCeEEEecCCCC
Confidence 56899999999999999999999987 99999999998877443 3333333333333 12457999999998875
Q ss_pred h
Q 001096 1086 A 1086 (1158)
Q Consensus 1086 ~ 1086 (1158)
.
T Consensus 88 ~ 88 (135)
T PF01488_consen 88 P 88 (135)
T ss_dssp T
T ss_pred c
Confidence 5
No 207
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.77 E-value=5.3 Score=38.70 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=64.8
Q ss_pred cccccCCcccHHHHHHHHhhC--CCCE-EEEeCCchHHHHh-hhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1011 HIILCGFGRVGQIIAQLLSER--LIPF-VALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~--g~~V-vVID~d~~~v~~l-~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
++.|+|.|.+|+.-...+.+. +.++ -+.|.++++.+.. +..|.+ .+.| .+.+-+.. +.|+|++++++...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~---~~~ll~~~--~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTD---LEELLADE--DVDAVIIATPPSSH 75 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EESS---HHHHHHHT--TESEEEEESSGGGH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-chhH---HHHHHHhh--cCCEEEEecCCcch
Confidence 467899999999999888776 3344 4789999988765 566888 5544 33333322 79999999999754
Q ss_pred hHHHHHHHHhhCCCceEEEE---ecChhhHHHH
Q 001096 1087 NYRTVWALSKYFPNVKTFVR---AHDIDHGLNL 1116 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIar---a~d~e~~~~L 1116 (1158)
..++..+-+.+ ..|++. +.+.+....+
T Consensus 76 -~~~~~~~l~~g--~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 76 -AEIAKKALEAG--KHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp -HHHHHHHHHTT--SEEEEESSSSSSHHHHHHH
T ss_pred -HHHHHHHHHcC--CEEEEEcCCcCCHHHHHHH
Confidence 44444444444 367766 4455555444
No 208
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.73 E-value=2.5 Score=47.38 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=50.3
Q ss_pred cccccCCcccHHHHHHHHhhCC---CCEEEEeCCchHHHHhhhC-CCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERL---IPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g---~~VvVID~d~~~v~~l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
.+.|+|.|.+|..++..|.+.+ .+|.++|+++++.+.+.+. |..+. . +..+. ++++|.|++++..+
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~-~--~~~~~-----~~~advVil~v~~~ 73 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA-T--DNQEA-----AQEADVVVLAVKPQ 73 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec-C--ChHHH-----HhcCCEEEEEcCHH
Confidence 4789999999999999999888 7899999999988877664 54331 1 11222 35789999999765
No 209
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=86.73 E-value=2.4 Score=48.65 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=73.5
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchH-HHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~-v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
++-++|.|.+|..++..|.+.|+++.+.|+++++ .+.+...|..+.. ++ ..-+..+|+||++..|+..-..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~----s~----~eaa~~aDvVitmv~~~~~V~~ 73 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAA----SP----AEAAAEADVVITMLPDDAAVRA 73 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccC----CH----HHHHHhCCEEEEecCCHHHHHH
Confidence 3567999999999999999999999999999999 6777776754432 22 1224579999999999855444
Q ss_pred HHH----HHHhhCCCceEEEE--ecCh----hhHHHHHHCCCCeeecC
Q 001096 1090 TVW----ALSKYFPNVKTFVR--AHDI----DHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1090 i~l----~ar~l~p~~~IIar--a~d~----e~~~~L~~aGAd~VI~p 1127 (1158)
+.. .+....|. .+++- +.++ +....+++.|...+--|
T Consensus 74 V~~g~~g~~~~~~~G-~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAP 120 (286)
T COG2084 74 VLFGENGLLEGLKPG-AIVIDMSTISPETARELAAALAAKGLEFLDAP 120 (286)
T ss_pred HHhCccchhhcCCCC-CEEEECCCCCHHHHHHHHHHHHhcCCcEEecC
Confidence 432 33333343 33332 3334 34455577788776655
No 210
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=86.71 E-value=5.2 Score=37.60 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=66.1
Q ss_pred EEEEeCCchHHHHh----hhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch-hhHHHHHHHHhhCCCceEEEEecC
Q 001096 1035 FVALDVRSDRVAIG----RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG-ANYRTVWALSKYFPNVKTFVRAHD 1109 (1158)
Q Consensus 1035 VvVID~d~~~v~~l----~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~-~Nl~i~l~ar~l~p~~~IIara~d 1109 (1158)
|+++|.++...+.+ +..|+..+.-=.+..+.+..+.-...+.+++-...+. .-+.++..+|..+|++++|+.+.+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 46777777665433 3345522222222344555655666888888775554 445688889999999999988855
Q ss_pred --hhhHHHHHHCCCCeeecCCcHHHH
Q 001096 1110 --IDHGLNLEKAGATAVVPETLEPSL 1133 (1158)
Q Consensus 1110 --~e~~~~L~~aGAd~VI~p~~~a~~ 1133 (1158)
........++|++.++.-......
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp~~~~~ 106 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKPFSPEE 106 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESSSSHHH
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHH
Confidence 457778889999988877665554
No 211
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.58 E-value=5.4 Score=45.38 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=62.8
Q ss_pred ccccccCCcccHHHHHHHHhhCCC----CEEEEeCCchHHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLI----PFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~----~VvVID~d~~~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
..+.++|.|.+|..++.-|.+.|+ ++.+.|+++++.+.+.+ .|... .. +..+. ++++|.||+++.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~-~~--~~~e~-----~~~aDiIiLavkP~ 74 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI-TT--NNNEV-----ANSADILILSIKPD 74 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE-eC--CcHHH-----HhhCCEEEEEeChH
Confidence 358899999999999999998774 59999999999887764 56432 21 12222 34789999999853
Q ss_pred hhhHHHHHHHHhh-CCCceEEEEecChhhHHHHHH
Q 001096 1085 GANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1085 ~~Nl~i~l~ar~l-~p~~~IIara~d~e~~~~L~~ 1118 (1158)
.-..+...++.. .++ .+++-.--.-..+.+++
T Consensus 75 -~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~ 107 (272)
T PRK12491 75 -LYSSVINQIKDQIKND-VIVVTIAAGKSIKSTEN 107 (272)
T ss_pred -HHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHH
Confidence 323333344432 333 34444444433444443
No 212
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=86.58 E-value=2.8 Score=47.70 Aligned_cols=114 Identities=18% Similarity=0.055 Sum_probs=71.1
Q ss_pred ccccccCCcccHHHHHHHHhhC--CCCEE-EEeCCchHHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1010 DHIILCGFGRVGQIIAQLLSER--LIPFV-ALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~--g~~Vv-VID~d~~~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
-++-|+|+|++|+.+++.|... +.+++ +.|+++++.+.+.+ .|....+ .+.+.|. .+.|+|+++++++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~---~~~eell----~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPV---VPLDQLA----THADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCccc---CCHHHHh----cCCCEEEECCCcHH
Confidence 4588999999999999999863 66766 77989888765533 2422222 3444442 45899999999875
Q ss_pred hhHHHHHHHHhhCCCceEEEEecC-----hhhHHHHHHCCCCeeecCCcHHHH
Q 001096 1086 ANYRTVWALSKYFPNVKTFVRAHD-----IDHGLNLEKAGATAVVPETLEPSL 1133 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l~p~~~IIara~d-----~e~~~~L~~aGAd~VI~p~~~a~~ 1133 (1158)
. ...+..+-+.+. .+++.... .+..+..++.|..-.+++....+.
T Consensus 80 h-~e~~~~aL~aGk--~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 80 L-RAIVEPVLAAGK--KAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred H-HHHHHHHHHcCC--cEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 4 333333334443 44443321 333444566788776765555554
No 213
>PRK08264 short chain dehydrogenase; Validated
Probab=86.43 E-value=1.6 Score=47.17 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=55.8
Q ss_pred ccccccC-CcccHHHHHHHHhhCCC-CEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC--ccccCEEEEecCC
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--AERACAAAITLDT 1083 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag--I~~A~~VIi~t~d 1083 (1158)
+.++|.| .|.+|+.+++.|.++|. .|++++++++..+. ...+..++.+|.+|++.++++- ....|+||-...-
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 4677887 58999999999999998 99999999877654 3346778899999988876542 2356777665543
No 214
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=86.40 E-value=1.4 Score=51.35 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=55.3
Q ss_pred cccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh-----hCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-----ALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1009 ~~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~-----~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
...++|.|. |-+|..+++.|.++|++|++++++++...... ..++.++.+|.++++.++++ +++.|+||-+..
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~A~ 88 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA-VKGCDGVFHVAA 88 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH-HcCCCEEEECCc
Confidence 446888884 88999999999999999999988876544322 12467889999999888776 345777776653
No 215
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=86.38 E-value=0.85 Score=53.92 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=71.0
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
.+.|+|.|..|+.++....+.|++|+++|.+++.... ......+.+|..|++.+.++- +.+|++ +.+....+...
T Consensus 4 ~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~--~~ad~~~~~~~~D~~~l~~~a-~~~dvi--t~e~e~i~~~~ 78 (372)
T PRK06019 4 TIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAA--QVADEVIVADYDDVAALRELA-EQCDVI--TYEFENVPAEA 78 (372)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchh--HhCceEEecCCCCHHHHHHHH-hcCCEE--EeCcCCCCHHH
Confidence 4789999999999999999999999999998775321 223457779999999998763 467764 33333233322
Q ss_pred HHHHHh---hCCCceEEEEecChh-hHHHHHHCCCCe
Q 001096 1091 VWALSK---YFPNVKTFVRAHDID-HGLNLEKAGATA 1123 (1158)
Q Consensus 1091 ~l~ar~---l~p~~~IIara~d~e-~~~~L~~aGAd~ 1123 (1158)
...+.+ ..|+...+..+.|.. ....|+++|+..
T Consensus 79 l~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~ 115 (372)
T PRK06019 79 LDALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIPV 115 (372)
T ss_pred HHHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 222222 335555555555543 555567777653
No 216
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=86.37 E-value=16 Score=44.39 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=54.9
Q ss_pred cccccccCCcccHHHHHHHHhhC---CCCEE-EEeCCchHHHHhhhCCCCEEEccCCCH-HHHHhcCccccCEEEEecCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSER---LIPFV-ALDVRSDRVAIGRALDLPVYFGDAGSR-EVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~---g~~Vv-VID~d~~~v~~l~~~g~~vi~GDasd~-e~L~~AgI~~A~~VIi~t~d 1083 (1158)
...++|+|.|..+..+++.+.+. ++.++ ++|.|++.. ..-.|.+++ |+..+. +..++ .+.+.|+++.++
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~i~g~pVl-g~~~~l~~~i~~---~~id~ViIa~p~ 198 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR--VEVAGLPVL-GKLDDLVELVRA---HRVDEVIIALPL 198 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc--cccCCCccc-CCHHHHHHHHHh---CCCCEEEEecCc
Confidence 45699999999999999999753 45444 467665542 222466654 544332 23333 457788888776
Q ss_pred chhh--HHHHHHHHhhCCCceEEE
Q 001096 1084 PGAN--YRTVWALSKYFPNVKTFV 1105 (1158)
Q Consensus 1084 d~~N--l~i~l~ar~l~p~~~IIa 1105 (1158)
.... ..+...+++.+.+++++-
T Consensus 199 ~~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 199 SEEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred ccHHHHHHHHHHHHhcCCEEEEeC
Confidence 5432 245556666654444443
No 217
>PRK06953 short chain dehydrogenase; Provisional
Probab=86.04 E-value=2.4 Score=45.66 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=57.6
Q ss_pred ccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhc--Cc--cccCEEEEecC
Q 001096 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV--GA--ERACAAAITLD 1082 (1158)
Q Consensus 1012 vVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~A--gI--~~A~~VIi~t~ 1082 (1158)
++|.| .|.+|..+++.|.+.|.+|++++.+++..+.+...+...+.+|.++++.++++ .+ .+.+.+|...+
T Consensus 4 vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 4 VLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred EEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence 55665 68899999999999999999999999888877777888899999999988774 22 24677776543
No 218
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.02 E-value=32 Score=37.74 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHH
Q 001096 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVH 221 (1158)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~ 221 (1158)
+.++.+.|.++++.+..+..+..++|.+..+.-+.+--+++.|..|-..= +|-.|++|.+
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g------------~edLAr~al~ 91 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG------------REDLAREALQ 91 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHH
Confidence 66788888999999999999999999998888888887777776664332 4556666655
No 219
>PRK06101 short chain dehydrogenase; Provisional
Probab=85.99 E-value=1.2 Score=48.58 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=48.8
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC--CCCEEEccCCCHHHHHhc
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKV 1069 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~--g~~vi~GDasd~e~L~~A 1069 (1158)
.++|.| .|.+|..+++.|.++|++|+++++++++.+.+.+. ...++.+|.+|++.++++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHH
Confidence 356666 58899999999999999999999998887766543 477889999999987664
No 220
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.95 E-value=2 Score=46.65 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=60.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCc-------------------hHHHH----hhhC--CC--CEEEccC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS-------------------DRVAI----GRAL--DL--PVYFGDA 1060 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~-------------------~~v~~----l~~~--g~--~vi~GDa 1060 (1158)
+.+++|+|.|.+|..+++.|...|. .++++|.|. .+++. +++. .. ..+..+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i 100 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV 100 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC
Confidence 5689999999999999999999998 899999982 22222 2221 12 2223333
Q ss_pred CCHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1061 GSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1061 sd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
. ++.+.+ -++++|.||.++++...-..+...+++.+
T Consensus 101 ~-~~~~~~-~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ 136 (202)
T TIGR02356 101 T-AENLEL-LINNVDLVLDCTDNFATRYLINDACVALG 136 (202)
T ss_pred C-HHHHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 3 333332 25689999999988877777777777775
No 221
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.88 E-value=4.3 Score=50.04 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=73.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC----CCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~----g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
++=++|.|.+|..+++.|.++|++|++.|+++++++.+.+. |...+.+ ..+++.+- ..+++++.|+++..++..
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~-a~s~~e~v-~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYG-FKDPEDFV-LSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCccccc-CCCHHHHH-hcCCCCCEEEEECCCcHH
Confidence 57889999999999999999999999999999999877653 3221111 22333322 135579999999988864
Q ss_pred hHHHHH-HHHhhCCCceEEEEecCh------hhHHHHHHCCCCeeecC
Q 001096 1087 NYRTVW-ALSKYFPNVKTFVRAHDI------DHGLNLEKAGATAVVPE 1127 (1158)
Q Consensus 1087 Nl~i~l-~ar~l~p~~~IIara~d~------e~~~~L~~aGAd~VI~p 1127 (1158)
--.+.. .+..+.|. .|++-..+. +..+.+++.|+..+=.|
T Consensus 86 V~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 86 VDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred HHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 333322 23334444 566655443 23345566677665444
No 222
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=85.88 E-value=3 Score=48.65 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=51.4
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
+.+.|+|+|.+|+.+++.|+..|.+|++.++.....+.+...|..+. +.+.+ +.+||+|++.++|+..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-----sl~Ea----ak~ADVV~llLPd~~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-----SVSEA----VRTAQVVQMLLPDEQQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-----CHHHH----HhcCCEEEEeCCChHH
Confidence 45889999999999999999999999999866555555666676432 33222 3478999999998643
No 223
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.80 E-value=4 Score=48.80 Aligned_cols=70 Identities=27% Similarity=0.274 Sum_probs=48.7
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHh------------cCccccCEEEE
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK------------VGAERACAAAI 1079 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~------------AgI~~A~~VIi 1079 (1158)
+.|+|.|.+|..++..+. .|++|+++|.|+++++.+.+.-.++ . ++.-.+.+.+ .-+.+++.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~-~-e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPI-V-DKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred EEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCC-C-CcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 678999999999998776 4999999999999999886532221 1 1111111100 01368999999
Q ss_pred ecCCc
Q 001096 1080 TLDTP 1084 (1158)
Q Consensus 1080 ~t~dd 1084 (1158)
+++++
T Consensus 80 ~Vpt~ 84 (388)
T PRK15057 80 ATPTD 84 (388)
T ss_pred eCCCC
Confidence 99876
No 224
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.76 E-value=3.5 Score=47.37 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=51.0
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-----CCCE-------EEccCCCHHHHHhcCccccCEE
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPV-------YFGDAGSREVLHKVGAERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-----g~~v-------i~GDasd~e~L~~AgI~~A~~V 1077 (1158)
.++.|+|.|.+|..++..|...|++|+++|.+++..+.+.+. |... ..+...-...+.+ .++++|.|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~aDlV 83 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAA-AVSGADLV 83 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHH-HhccCCEE
Confidence 358899999999999999999999999999999888766431 2100 0000000011222 14678999
Q ss_pred EEecCCch
Q 001096 1078 AITLDTPG 1085 (1158)
Q Consensus 1078 Ii~t~dd~ 1085 (1158)
|.++.++.
T Consensus 84 i~av~~~~ 91 (311)
T PRK06130 84 IEAVPEKL 91 (311)
T ss_pred EEeccCcH
Confidence 99998874
No 225
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.60 E-value=1.4 Score=45.78 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=49.8
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCC------------CEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDL------------PVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~------------~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
+.|+|.|.+|..++..|...|++|.+...+++.++.+++.+. ++.. -+|.+ + -+++||.+++
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~--t~dl~---~-a~~~ad~Iii 75 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA--TTDLE---E-ALEDADIIII 75 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE--ESSHH---H-HHTT-SEEEE
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc--ccCHH---H-HhCcccEEEe
Confidence 679999999999999999999999999999999887755332 1111 12221 1 2357899999
Q ss_pred ecCCchhh
Q 001096 1080 TLDTPGAN 1087 (1158)
Q Consensus 1080 ~t~dd~~N 1087 (1158)
+++.....
T Consensus 76 avPs~~~~ 83 (157)
T PF01210_consen 76 AVPSQAHR 83 (157)
T ss_dssp -S-GGGHH
T ss_pred cccHHHHH
Confidence 99887543
No 226
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=85.58 E-value=81 Score=36.97 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHhhccc---ccccccCchhHHHHHHHHH------HHHHHHHHhcCChhHHHhchh
Q 001096 612 ASVIFVPIFQKIPGGSPVLGYLAAGILIGPY---GLSIIRHVHGTKAIAEFGV------VFLLFNIGLELSVERLSSMKK 682 (1158)
Q Consensus 612 ~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~---gLgli~~~~~l~~LaeLGL------i~LLF~aGLelDl~~Lrr~~k 682 (1158)
++.++-++.-+-.--|-++--|-.|+++.+. ++|.+.....+..+-++|+ .++++-+|-=+|++-+..+.+
T Consensus 8 ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpllanP~ 87 (354)
T TIGR01109 8 VSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLLANPR 87 (354)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHHhChH
Confidence 3333334443331357777788888888743 2233333344454444442 345556888999999998887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHhhccccCcH
Q 001096 683 YVFGLGSAQVLVTAVVVGLVAHFVSGL------PGPASIVIGNGLALSST 726 (1158)
Q Consensus 683 ~il~Lai~gvllt~iivglll~~llGl------s~~~AlllGaiLs~TS~ 726 (1158)
..+.-+..++-+ + +.+.....+|+ +..+|--+|.+=.+-.|
T Consensus 88 ~~llGaaAQ~Gi-F--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 88 TLLLGAAAQFGI-F--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHHHHHHHHhhH-H--HHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 554444433322 1 22223334566 44666666655444333
No 227
>PLN02256 arogenate dehydrogenase
Probab=85.35 E-value=2.8 Score=48.46 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=50.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
...+.|+|.|.+|..++..|.+.|++|+++|.++.. +...+.|+.. ..+.+.+. ..++|+|+++++.+
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~----~~~~~e~~---~~~aDvVilavp~~ 103 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSF----FRDPDDFC---EEHPDVVLLCTSIL 103 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCee----eCCHHHHh---hCCCCEEEEecCHH
Confidence 346889999999999999999999999999998743 4445556532 23333221 13689999999876
No 228
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=85.30 E-value=11 Score=42.26 Aligned_cols=154 Identities=17% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001096 152 ELRELLMNAMKELEVAQLN-STMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLA 230 (1158)
Q Consensus 152 ~~~~~l~~~~~~~e~a~~~-~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a 230 (1158)
.--+-+.+-.++|+.||-. +...-+-.+++.+.+=-|-.-...|+-=.+ ....-.+.-.+=-.|....++|.-++..|
T Consensus 18 ~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYye-a~~~a~~aq~e~q~Aa~~yerA~~~h~aA 96 (239)
T PF05276_consen 18 QATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYE-ARRKAKEAQQEAQKAALQYERANSMHAAA 96 (239)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677788888876 445555556666655555444333332222 00011111111123555556666666666
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q 001096 231 EARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNE 310 (1158)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~ 310 (1158)
+..+.+|.+++....+ -+-...-.|.|--|-..+.+.+..-..+|.+-++...+-.++.++|-.|..
T Consensus 97 Ke~v~laEq~l~~~~~-------------~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek 163 (239)
T PF05276_consen 97 KEMVALAEQSLMSDSN-------------WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEK 163 (239)
T ss_pred HHHHHHHHHHHhcCCc-------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655110 011223567889999999999999999999999888888888888888887
Q ss_pred HHHHHHHHH
Q 001096 311 VAEKAQMNA 319 (1158)
Q Consensus 311 ~~~~~~~~~ 319 (1158)
.-.++=.++
T Consensus 164 ~lkr~I~KS 172 (239)
T PF05276_consen 164 KLKRAIKKS 172 (239)
T ss_pred HHHHHHHhh
Confidence 666554443
No 229
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.25 E-value=1.1e+02 Score=42.35 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=51.9
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhhhcccHH
Q 001096 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVA-FEIEATQRVNDAE 351 (1158)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~-~e~e~~~~~~~~~ 351 (1158)
.++.+..++..+..|+++.+.++......+++++.+++...+++..-.+++.++.+...-.++.-. .+-+..+|-...+
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 684 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIE 684 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666666666666666666666665544333221 1222233444555
Q ss_pred HHHHHHHHhhcCCC
Q 001096 352 IALQRAEKSLSNSS 365 (1158)
Q Consensus 352 ~~~~~~~~~~~~~~ 365 (1158)
.++++++..+..++
T Consensus 685 ~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 685 EQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666555554
No 230
>PRK05884 short chain dehydrogenase; Provisional
Probab=85.21 E-value=1.4 Score=47.80 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=53.4
Q ss_pred ccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh-hCCCCEEEccCCCHHHHHhcCc---cccCEEEEe
Q 001096 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGA---ERACAAAIT 1080 (1158)
Q Consensus 1012 vVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~-~~g~~vi~GDasd~e~L~~AgI---~~A~~VIi~ 1080 (1158)
++|.|. +.+|+.+++.|.++|++|+++++++++.+... +.+..++.+|.++++.++++-- ++.|.+|-.
T Consensus 3 vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 3 VLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred EEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 566765 78999999999999999999999988876553 3467889999999998765411 246776643
No 231
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.16 E-value=2.2 Score=48.79 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=64.3
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCH--HHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSR--EVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~--e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
...++|+|.|.+|..+++.|++.|+.+.+++.|.............+ .|. .......+..||+||++++-...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv-----~d~~~~~~~~~~~~~aD~VivavPi~~~ 77 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV-----IDELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc-----ccccccchhhhhcccCCEEEEeccHHHH
Confidence 45789999999999999999999999988888776544333322222 222 12223445679999999987643
Q ss_pred hHHHHHHHHhhCCCceEEEEecC--hhhHHHHHHCCCC
Q 001096 1087 NYRTVWALSKYFPNVKTFVRAHD--IDHGLNLEKAGAT 1122 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIara~d--~e~~~~L~~aGAd 1122 (1158)
.-.+...+..+.|+ .++.-+-+ ..-.+.+++.+.+
T Consensus 78 ~~~l~~l~~~l~~g-~iv~Dv~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 78 EEVLKELAPHLKKG-AIVTDVGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred HHHHHHhcccCCCC-CEEEecccccHHHHHHHHHhccC
Confidence 33333333323333 34443333 2334444444433
No 232
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=85.11 E-value=2.1 Score=47.43 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=69.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEE-EEeC----------CchHHHHhhhC-CC-CEEE-ccCCCHHHHHhcCcccc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFV-ALDV----------RSDRVAIGRAL-DL-PVYF-GDAGSREVLHKVGAERA 1074 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~Vv-VID~----------d~~~v~~l~~~-g~-~vi~-GDasd~e~L~~AgI~~A 1074 (1158)
..+++|.|+|.+|+.+++.|.+.|..|+ +.|. |.+.+..+.+. |. .-+. +...+++.+... ++
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~---~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL---DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee---cc
Confidence 4678899999999999999999999999 7787 76766555332 21 1000 111122222222 68
Q ss_pred CEEEEecCCchhhHHHHHHHHhhCCCceEEEEecC----hhhHHHHHHCCCCe
Q 001096 1075 CAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATA 1123 (1158)
Q Consensus 1075 ~~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIara~d----~e~~~~L~~aGAd~ 1123 (1158)
|.++=++..+..|-..+..++ +++|+..-| ++..+.|++-|+-.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~t~~a~~~L~~rGi~~ 155 (227)
T cd01076 108 DILIPAALENQITADNADRIK-----AKIIVEAANGPTTPEADEILHERGVLV 155 (227)
T ss_pred cEEEecCccCccCHHHHhhce-----eeEEEeCCCCCCCHHHHHHHHHCCCEE
Confidence 888887766655554443332 677777665 45778888888654
No 233
>PLN02650 dihydroflavonol-4-reductase
Probab=85.11 E-value=1.1 Score=51.89 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=53.5
Q ss_pred cccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh--------CCCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1009 ~~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~--------~g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
++.++|.|. |-+|..+++.|.++|++|++++.+++....... ..+.++.||.++++.++++ +++++.||-
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~~d~ViH 83 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRGCTGVFH 83 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhCCCEEEE
Confidence 346778775 899999999999999999998887655433211 1356889999999888765 345777765
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
+.
T Consensus 84 ~A 85 (351)
T PLN02650 84 VA 85 (351)
T ss_pred eC
Confidence 54
No 234
>PRK06914 short chain dehydrogenase; Provisional
Probab=85.09 E-value=1.4 Score=49.17 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=54.3
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh--------CCCCEEEccCCCHHHHHhc-----CccccC
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKV-----GAERAC 1075 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~--------~g~~vi~GDasd~e~L~~A-----gI~~A~ 1075 (1158)
++++|+| .|.+|..+++.|.++|+.|++++++++..+...+ ..+.++.+|.+|++.+++. .....+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 83 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRID 83 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCee
Confidence 4577887 4789999999999999999999998876543321 2467789999999987641 123467
Q ss_pred EEEEecC
Q 001096 1076 AAAITLD 1082 (1158)
Q Consensus 1076 ~VIi~t~ 1082 (1158)
++|-..+
T Consensus 84 ~vv~~ag 90 (280)
T PRK06914 84 LLVNNAG 90 (280)
T ss_pred EEEECCc
Confidence 7777653
No 235
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=85.07 E-value=3.8 Score=44.54 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=59.3
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCC---chHHHH-------------------hhhC----CCCEEEccCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVR---SDRVAI-------------------GRAL----DLPVYFGDAG 1061 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d---~~~v~~-------------------l~~~----g~~vi~GDas 1061 (1158)
+.+++|+|.|.+|..++..|...|+ .++++|.| +....+ +++. .+..+..+.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~ 100 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKIT 100 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCC
Confidence 5689999999999999999999999 69999999 333221 1110 1233334443
Q ss_pred CHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhCCCceEEE
Q 001096 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFV 1105 (1158)
Q Consensus 1062 d~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIa 1105 (1158)
. +.+.+. ++++|.||-++++...-..+...+....+...+++
T Consensus 101 ~-~~~~~~-~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 101 E-ENIDKF-FKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred H-hHHHHH-hcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 3 333322 45789999888776555444444444443334443
No 236
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.02 E-value=5.1 Score=45.41 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=33.9
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVA 1046 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~ 1046 (1158)
++.|+|.|.+|..++..+...|++|+++|.+++..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVD 40 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHH
Confidence 588999999999999999999999999999999885
No 237
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=85.01 E-value=1.6 Score=50.50 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=52.2
Q ss_pred cccccCC-cccHHHHHHHHhhC-CCCEEEEeCCchHHHHh-hhCCCCEEEccCC-CHHHHHhcCccccCEEE
Q 001096 1011 HIILCGF-GRVGQIIAQLLSER-LIPFVALDVRSDRVAIG-RALDLPVYFGDAG-SREVLHKVGAERACAAA 1078 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~-g~~VvVID~d~~~v~~l-~~~g~~vi~GDas-d~e~L~~AgI~~A~~VI 1078 (1158)
+++|.|. |-+|..+++.|.+. |++|+.+|.+.+....+ ...+++++.||.. +.+.+.++ ++++|+||
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~Vi 73 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVIL 73 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEEE
Confidence 4889997 99999999999876 69999999877655444 3346889999998 66666554 44688877
No 238
>PRK10698 phage shock protein PspA; Provisional
Probab=85.01 E-value=63 Score=35.87 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001096 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1158)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a 185 (1158)
+.++++-|.+++..+..+......+|.+..+.-..+
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~ 68 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQ 68 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444333
No 239
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.96 E-value=3.6 Score=46.84 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=35.6
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhh
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR 1049 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~ 1049 (1158)
.++.|+|.|.+|..++..|...|++|+++|.+++..+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 3588999999999999999999999999999998776553
No 240
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.84 E-value=1.5 Score=47.59 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=54.0
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. |.+|+.+++.|.++|.+|++++++++..+.+.+ .+..++.+|.++++.+.++= ..+.|.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 86 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDV 86 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35677774 889999999999999999999999876654422 24567889999998765431 135788
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-...
T Consensus 87 lv~~ag 92 (241)
T PRK07454 87 LINNAG 92 (241)
T ss_pred EEECCC
Confidence 776553
No 241
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=84.79 E-value=16 Score=42.61 Aligned_cols=74 Identities=23% Similarity=0.207 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHH
Q 001096 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFG 949 (1158)
Q Consensus 874 ~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ 949 (1158)
++++=|+.|+-+|..+|+.-+..+++.+ ++-....++- ..+++.+...|++.+|+..+|.+-..-|-.++.+..
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllanP~~~-llGaaAQ~Gi-f~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLANPKTL-LLGAAAQFGI-FATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhCHHHH-HHHHHHHHhH-HHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 5788899999999999999998876653 2333344443 344555666799999999999998888888777655
No 242
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.75 E-value=5.5 Score=43.70 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=57.8
Q ss_pred cccccccCCcccHHHHHHHHhhCCCC-EEEEeCCc------------------hHHHHh----hhC----CCCEEEccCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRS------------------DRVAIG----RAL----DLPVYFGDAG 1061 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~-VvVID~d~------------------~~v~~l----~~~----g~~vi~GDas 1061 (1158)
..+++|+|.|-+|..+++.|...|+. ++++|.|. .+++.+ ++. .+..+....+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~ 107 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKID 107 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecC
Confidence 46799999999999999999999985 99999992 122211 111 2233334443
Q ss_pred CHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhh
Q 001096 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKY 1097 (1158)
Q Consensus 1062 d~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l 1097 (1158)
+ +.+.+ -++++|.||.++++...-..+...+++.
T Consensus 108 ~-~~~~~-~~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 108 E-DNIEE-LFKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred H-HHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 3 22322 2467899988888877655555566665
No 243
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.68 E-value=4.4 Score=48.20 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=56.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHH--------------hcCccccCE
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLH--------------KVGAERACA 1076 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~--------------~AgI~~A~~ 1076 (1158)
.+.|+|.|.+|...+-.|.+.|++|+.+|.|+++++.+.+...|++. +.=++.|+ +..+.+++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~E--pgLe~ll~~~~~~gRl~fTtd~~~a~~~adv 79 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYE--PGLEELLKENLASGRLRFTTDYEEAVKDADV 79 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcC--ccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence 36789999999999999999999999999999999999776555553 22333333 223668999
Q ss_pred EEEecCCc
Q 001096 1077 AAITLDTP 1084 (1158)
Q Consensus 1077 VIi~t~dd 1084 (1158)
++++++.|
T Consensus 80 ~fIavgTP 87 (414)
T COG1004 80 VFIAVGTP 87 (414)
T ss_pred EEEEcCCC
Confidence 99998776
No 244
>PLN02686 cinnamoyl-CoA reductase
Probab=84.64 E-value=1.6 Score=51.54 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=51.3
Q ss_pred ccccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----------CCCCEEEccCCCHHHHHhcCccccC
Q 001096 1008 LQDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----------LDLPVYFGDAGSREVLHKVGAERAC 1075 (1158)
Q Consensus 1008 l~~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----------~g~~vi~GDasd~e~L~~AgI~~A~ 1075 (1158)
..+.++|.|. |-+|..+++.|.++|++|+++..+.+..+.+.. .++.++.||.+|++.+.++ ++.++
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-i~~~d 130 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA-FDGCA 130 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH-HHhcc
Confidence 3456788886 889999999999999999887776655443322 1467889999999988664 33455
Q ss_pred EEE
Q 001096 1076 AAA 1078 (1158)
Q Consensus 1076 ~VI 1078 (1158)
.|+
T Consensus 131 ~V~ 133 (367)
T PLN02686 131 GVF 133 (367)
T ss_pred EEE
Confidence 554
No 245
>PRK08219 short chain dehydrogenase; Provisional
Probab=84.62 E-value=1.9 Score=46.07 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=55.0
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh--CCCCEEEccCCCHHHHHhcC--ccccCEEEEecC
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGSREVLHKVG--AERACAAAITLD 1082 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~--~g~~vi~GDasd~e~L~~Ag--I~~A~~VIi~t~ 1082 (1158)
.++|.| .|.+|..+++.|.++ +.|++++++++..+.+.+ .+..++.+|.+|++.+.++= +.+.+.+|-+..
T Consensus 5 ~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 5 TALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred EEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 466766 588999999999999 999999999877655432 36788999999998887642 236788877654
No 246
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=84.42 E-value=3.5 Score=45.23 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=79.5
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchH-HHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~-v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.+.|+|.|++|..+++.|...|++|++.-++.+. .+.+.+ .+..+.-+. .... ++.||.|+++++-+ ...
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~-----~~dA--~~~aDVVvLAVP~~-a~~ 74 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGS-----NEDA--AALADVVVLAVPFE-AIP 74 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCC-----hHHH--HhcCCEEEEeccHH-HHH
Confidence 4689999999999999999999999999665554 443332 333322221 1112 34689999999876 445
Q ss_pred HHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHh
Q 001096 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~a~~~LA~~vl~~ 1142 (1158)
-+...++....+ +|++-+.++... .-.-+-.++++.+..+++.+++.+=..
T Consensus 75 ~v~~~l~~~~~~-KIvID~tnp~~~--~~~~~~~~~~~~~~saae~va~~lp~a 125 (211)
T COG2085 75 DVLAELRDALGG-KIVIDATNPIEV--NGEPGDLYLVPSEGSAAEIVAKLLPGA 125 (211)
T ss_pred hHHHHHHHHhCC-eEEEecCCCccc--cCCccccccCCCCCcHHHHHHHHCCCc
Confidence 566666665554 888888887432 223344455667778888777765444
No 247
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.41 E-value=18 Score=45.00 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=56.1
Q ss_pred cccccccccCCcccHHHHHHHHhhC--CCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1007 DLQDHIILCGFGRVGQIIAQLLSER--LIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1007 ~l~~hvVIiG~G~vG~~Ia~~L~e~--g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
+.+..++|+|.|.-|..+++.++.. ..+|-.+|.|++....- =.|++|+-... =++..++-+++ .++++.++-
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~-i~Gv~V~g~~~-i~~~v~~~~~~---~iiiAips~ 188 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMK-IRGVPVLGRIE-IERVVEELGIQ---LILIAIPSA 188 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCE-EeceeeechhH-HHHHHHHcCCc---eEEEecCCC
Confidence 3467899999999999999999864 45899999998765321 13778877776 77777777755 667777665
Q ss_pred hhh
Q 001096 1085 GAN 1087 (1158)
Q Consensus 1085 ~~N 1087 (1158)
+.+
T Consensus 189 ~~~ 191 (588)
T COG1086 189 SQE 191 (588)
T ss_pred CHH
Confidence 444
No 248
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=84.40 E-value=1.5 Score=47.12 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=60.6
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
..||+-.|+.|.+|.+....+|++|+.|-+|+.+.... .+..++.+|..|++.+ .-.+..-|+||.+.+-.
T Consensus 3 IaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 3 IAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSL-ASDLAGHDAVISAFGAG 73 (211)
T ss_pred EEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--ccceeecccccChhhh-HhhhcCCceEEEeccCC
Confidence 35777889999999999999999999999999987544 6888999999999998 55677889998887543
No 249
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.34 E-value=2.4 Score=52.16 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=56.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.++++|+|.|+.|...++.|...|.+|++.|.++...+.+++.|..++.|+.. ++.+ +++|.||...+-+..|
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~-~~~l-----~~~D~VV~SpGi~~~~ 84 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDA-VQQI-----ADYALVVTSPGFRPTA 84 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcch-HhHh-----hcCCEEEECCCCCCCC
Confidence 35699999999999999999999999999998877766677778877766442 2323 4578877777665444
No 250
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=84.07 E-value=0.36 Score=56.62 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHhhcccchh--HHHHHhHHhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHH
Q 001096 832 ILGTSLLTARAGLSMALGAFLAGLLLAETEFS--LQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLI 909 (1158)
Q Consensus 832 ~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~--~~l~e~l~~~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~l 909 (1158)
++....+.+.++++..+|-+++|++++...+. +.-...++.+.++.++++....|.++|+..+...+...+...+..+
T Consensus 8 ~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~ 87 (380)
T PF00999_consen 8 AFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGF 87 (380)
T ss_dssp ----------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccee
Confidence 33333468899999999999999999987544 1112445556788888888899999999999877655443333333
Q ss_pred HHHHHH-HHHHHH---hcCCChhhHHHHhhhccccch
Q 001096 910 GGKTIL-VALVGR---LFGVSVISAIRTGLLLAPGGE 942 (1158)
Q Consensus 910 l~K~l~-v~l~~~---~~g~~~real~lgL~La~rG~ 942 (1158)
+.-++. .+.... ..++++.+++.+|..+++-..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 88 LLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp --------------------------TTHHHHTT--H
T ss_pred eehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 333333 333332 468899999998888766554
No 251
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.05 E-value=2.7 Score=42.59 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=56.2
Q ss_pred cccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHH-------------------H----HhhhC--C--CCEEEccCCC
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRV-------------------A----IGRAL--D--LPVYFGDAGS 1062 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v-------------------~----~l~~~--g--~~vi~GDasd 1062 (1158)
+++|+|.|.+|..+++.|...|+ .++++|.|.-.. + .+++. + ...+..+..+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 47899999999999999999998 699999882211 1 11111 1 2233444443
Q ss_pred HHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1063 REVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1063 ~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
... ..-+++++.||.++++...-..+...+++.+
T Consensus 81 ~~~--~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~ 114 (143)
T cd01483 81 DNL--DDFLDGVDLVIDAIDNIAVRRALNRACKELG 114 (143)
T ss_pred hhH--HHHhcCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 332 2224578888888888666666666777664
No 252
>PRK07680 late competence protein ComER; Validated
Probab=83.97 E-value=5.6 Score=44.92 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=62.9
Q ss_pred ccccCCcccHHHHHHHHhhCCC----CEEEEeCCchHHHHhhhC--CCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1012 IILCGFGRVGQIIAQLLSERLI----PFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~----~VvVID~d~~~v~~l~~~--g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
+.|+|.|.+|..++..|.+.|. ++.++++++++.+.+.+. |..+. .+..+. ++++|.|++++.+..
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDiVilav~p~~ 74 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA---KTIEEV-----ISQSDLIFICVKPLD 74 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE---CCHHHH-----HHhCCEEEEecCHHH
Confidence 6799999999999999998883 799999999888776543 33221 122222 246899999996543
Q ss_pred hhHHHHHHHHhh-CCCceEEEEecChhhHHHHHHC
Q 001096 1086 ANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEKA 1119 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l-~p~~~IIara~d~e~~~~L~~a 1119 (1158)
...+...++.. .++ ++|+.....-..+.++..
T Consensus 75 -~~~vl~~l~~~l~~~-~~iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 75 -IYPLLQKLAPHLTDE-HCLVSITSPISVEQLETL 107 (273)
T ss_pred -HHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHHH
Confidence 23333334333 233 466666664455666543
No 253
>PRK07060 short chain dehydrogenase; Provisional
Probab=83.91 E-value=1.8 Score=46.98 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=56.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-CCCCEEEccCCCHHHHHhcC--ccccCEEEEecC
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVG--AERACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-~g~~vi~GDasd~e~L~~Ag--I~~A~~VIi~t~ 1082 (1158)
+.++|.|. |.+|..+++.|.+.|++|++++++++..+.+.+ .+..++.+|.++++.++++- ....|++|-...
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag 86 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG 86 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence 46888887 789999999999999999999999887765533 36778899999988765541 235677776553
No 254
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=83.90 E-value=3.1 Score=36.82 Aligned_cols=52 Identities=37% Similarity=0.441 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-hhH---HHHHHHHHHHHHHHH--HHHHHhhh
Q 001096 295 QSKKEELQKEVDRLNEVAEKAQMNAL-KAE---EDVANIMLLAEQAVA--FEIEATQR 346 (1158)
Q Consensus 295 ~~~~~~~q~~~~~~~~~~~~~~~~~~-~a~---~~~~~~m~~ae~av~--~e~e~~~~ 346 (1158)
-+..+|+||+|.|||-.|..|.|+-- .|| -+-..||-.||.+.+ .||.+++|
T Consensus 5 ms~l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ 62 (71)
T COG5420 5 MSSLEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKR 62 (71)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999853 344 356889999998754 46666554
No 255
>PRK07024 short chain dehydrogenase; Provisional
Probab=83.80 E-value=1.7 Score=48.03 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=53.9
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-----CCCEEEccCCCHHHHHhcC------ccccCEE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSREVLHKVG------AERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-----g~~vi~GDasd~e~L~~Ag------I~~A~~V 1077 (1158)
++++|.| .|.+|+.+++.|.++|.+|++++++++..+...+. ...++.+|.++++.++++- ....|.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~l 82 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVV 82 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 4577777 67899999999999999999999998876554321 4678889999988775431 1245777
Q ss_pred EEec
Q 001096 1078 AITL 1081 (1158)
Q Consensus 1078 Ii~t 1081 (1158)
|-..
T Consensus 83 v~~a 86 (257)
T PRK07024 83 IANA 86 (257)
T ss_pred EECC
Confidence 6544
No 256
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=83.75 E-value=1.6 Score=49.64 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=53.6
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHH---Hhh-----hCCCCEEEccCCCHHHHHhcCccccCEEEEe
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA---IGR-----ALDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~---~l~-----~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~ 1080 (1158)
..++|.| .|-+|..+++.|.++|++|++++.+++... .+. ..++.++.||.++++.+.++ ++++|+||-+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 83 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGCEGVFHT 83 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCCCEEEEe
Confidence 4588888 589999999999999999999888765422 111 12467889999999888765 3467887766
Q ss_pred c
Q 001096 1081 L 1081 (1158)
Q Consensus 1081 t 1081 (1158)
.
T Consensus 84 A 84 (322)
T PLN02662 84 A 84 (322)
T ss_pred C
Confidence 5
No 257
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=83.72 E-value=50 Score=36.99 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=60.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHH
Q 001096 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVG 970 (1158)
Q Consensus 891 l~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVV 970 (1158)
...+..+|..+++.+++..+.-+++.+..++++|.+. .+...+.||....-+.+.++.+.|-+..-...+++++-+
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~----~~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi 161 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN----AVMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAV 161 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH----HHHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4445555655555555555666777788888888874 234457899988888888888887765555555555566
Q ss_pred HHHHhHHHHHhhh
Q 001096 971 ISMALTPWLAAGG 983 (1158)
Q Consensus 971 lS~IitPlL~~~~ 983 (1158)
+..+++|.+.++.
T Consensus 162 ~Gai~g~~llk~~ 174 (232)
T PRK04288 162 IIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHc
Confidence 6777788777654
No 258
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.61 E-value=1.1e+02 Score=37.93 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001096 217 KEAVHKATMALSLAEARLQVAIESLQDVK 245 (1158)
Q Consensus 217 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1158)
.++++++......++..+..........+
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567777777777777776666666554
No 259
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.59 E-value=3.4 Score=43.81 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=57.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch--h
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG--A 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~--~ 1086 (1158)
...+.|+|+|++|+.+++.|+..|.+|++.|+...........++ ...+.+.+ +.++|+|++..+-.. .
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-----~~~~l~el----l~~aDiv~~~~plt~~T~ 106 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-----EYVSLDEL----LAQADIVSLHLPLTPETR 106 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-----EESSHHHH----HHH-SEEEE-SSSSTTTT
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-----eeeehhhh----cchhhhhhhhhccccccc
Confidence 456899999999999999999999999999999887653433333 11233333 235899999887543 3
Q ss_pred hHHHHHHHHhhCCCceEEE
Q 001096 1087 NYRTVWALSKYFPNVKTFV 1105 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIa 1105 (1158)
++.-...+....++..+|-
T Consensus 107 ~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp TSBSHHHHHTSTTTEEEEE
T ss_pred eeeeeeeeeccccceEEEe
Confidence 3344455566666654443
No 260
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=83.59 E-value=21 Score=43.44 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=54.3
Q ss_pred cccccccCCcccHHHHHHHHhhC---CCCE-EEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSER---LIPF-VALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~---g~~V-vVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
+.+++|+|.|..|..+++.|++. |+.+ -.+|.|+...... .|.+++ |+..+...+ +.-.+++.|+++.++.
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~--~gvpVl-g~~~dl~~~--i~~~~vd~ViIA~p~~ 202 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGV--RGVPVL-GKLDDLEEL--IREGEVDEVYIALPLA 202 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc--CCCCcc-CCHHHHHHH--HHhcCCCEEEEeeCcc
Confidence 46799999999999999999753 4544 4567665543221 466653 544442222 2224678888888765
Q ss_pred hhh--HHHHHHHHhhCCCceEE
Q 001096 1085 GAN--YRTVWALSKYFPNVKTF 1104 (1158)
Q Consensus 1085 ~~N--l~i~l~ar~l~p~~~II 1104 (1158)
... ..+...+++.+.+++++
T Consensus 203 ~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 203 AEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred cHHHHHHHHHHHHhcCCEEEEe
Confidence 322 23444555555444443
No 261
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=83.41 E-value=58 Score=39.45 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC------chhHHHHHHHHHHHHHHHHHhc-CChhHHHhchhhH
Q 001096 612 ASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH------VHGTKAIAEFGVVFLLFNIGLE-LSVERLSSMKKYV 684 (1158)
Q Consensus 612 ~a~ilg~Ll~Rl~glP~VVG~ILaGILLGP~gLgli~~------~~~l~~LaeLGLi~LLF~aGLe-lDl~~Lrr~~k~i 684 (1158)
.-++++.++.++.++|....+++.=+++-- +|++++ ..+-+++..-....+|+-.|+. +|++.+.+.....
T Consensus 257 ~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~--~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~ 334 (414)
T PF03390_consen 257 SFYILGVLLSKLIGIHAYAWMIILVAIVKA--FGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ 334 (414)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH
Confidence 355667777777689999988887777753 566653 2456788888889999999998 9999999887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-Hhhccc
Q 001096 685 FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIV-IGNGLA 722 (1158)
Q Consensus 685 l~Lai~gvllt~iivglll~~llGls~~~All-lGaiLs 722 (1158)
..+-++.+++...+.+++...++|+.+.++-+ -|.+.+
T Consensus 335 ~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~a 373 (414)
T PF03390_consen 335 YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMA 373 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhccc
Confidence 66666666666666777777888886655444 443433
No 262
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.39 E-value=4.2 Score=50.27 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=72.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCC-------------HHHHH------hc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS-------------REVLH------KV 1069 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd-------------~e~L~------~A 1069 (1158)
...++|+|.|.+|...+..++..|..|+++|.++++.+.+++.|..++.-|..+ .+..+ .-
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999999998855333322 11111 11
Q ss_pred CccccCEEEEecCCch---hhHHHHHHHHhhCCCceEEEEecC
Q 001096 1070 GAERACAAAITLDTPG---ANYRTVWALSKYFPNVKTFVRAHD 1109 (1158)
Q Consensus 1070 gI~~A~~VIi~t~dd~---~Nl~i~l~ar~l~p~~~IIara~d 1109 (1158)
.+.++|.+|-+...+. .-+..-..++...|.-.|+-...+
T Consensus 245 ~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 2357999999998754 222235566777777666555543
No 263
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=83.34 E-value=4.1 Score=48.48 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=39.3
Q ss_pred cccccCCcccHH-HHHHHHhhCCCCEEEEeCCchHHHHhhhCCCC
Q 001096 1011 HIILCGFGRVGQ-IIAQLLSERLIPFVALDVRSDRVAIGRALDLP 1054 (1158)
Q Consensus 1011 hvVIiG~G~vG~-~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~ 1054 (1158)
.++++|.|.+|+ .+...|.+.|++|+.+|.++..++.+++.|..
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY 46 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSY 46 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCe
Confidence 478999999998 67889999999999999999999999888764
No 264
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.32 E-value=0.73 Score=55.63 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=96.8
Q ss_pred cCcccccccccccccCCc---ccHHHHHHHHhhC----CCCEEEEeCCchHH--HHh-hhC--CCCEEEccCCCHHHHHh
Q 001096 1001 VESETDDLQDHIILCGFG---RVGQIIAQLLSER----LIPFVALDVRSDRV--AIG-RAL--DLPVYFGDAGSREVLHK 1068 (1158)
Q Consensus 1001 ~e~~~~~l~~hvVIiG~G---~vG~~Ia~~L~e~----g~~VvVID~d~~~v--~~l-~~~--g~~vi~GDasd~e~L~~ 1068 (1158)
.+...++-++|+|+||+= .+..-+.+-|++. +.+|+.+.+-+... +.+ ++. .++++.|-..++..|.+
T Consensus 349 geyk~ehgkkhivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 349 GEYKAEHGKKHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred ceeehhcCCeeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHhhheeeEEEecccccChhhhhh
Confidence 344455668999999953 4555566666653 23556555443322 222 222 57888999999999999
Q ss_pred cCccccCEEEEecCC--------chhhHHHHHHHHhhCCCceEEEEecChhhHHHH-------HHCCCCeeecCCcHHHH
Q 001096 1069 VGAERACAAAITLDT--------PGANYRTVWALSKYFPNVKTFVRAHDIDHGLNL-------EKAGATAVVPETLEPSL 1133 (1158)
Q Consensus 1069 AgI~~A~~VIi~t~d--------d~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L-------~~aGAd~VI~p~~~a~~ 1133 (1158)
..++.||+.+++.+- |..|+.-+..+|...|+++||...-.-.+...| -+-|-|.+-..+.-.|-
T Consensus 429 vki~~adaclvlankyc~dpdaedaanimrvisiknys~dirvi~qlmqyhnkayllnipswdwk~gddviclaelklgf 508 (1103)
T KOG1420|consen 429 VKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSPDIRVITQLMQYHNKAYLLNIPSWDWKEGDDVICLAELKLGF 508 (1103)
T ss_pred eeccccceeeeecccccCCCChhhhhhheEEEEeccCCCchhHHHHHHHhhchheeecCCCcccccCCceEEehhhhhhh
Confidence 999999998776542 356777677788888888887654433333333 13455555444444444
Q ss_pred HHHHHHHHhhhhhhhhHHHHh
Q 001096 1134 QLAAAVLAQVIHDYQREKVFR 1154 (1158)
Q Consensus 1134 ~LA~~vl~~~i~~~~~~~vf~ 1154 (1158)
+|..-+.|+..-.+ ..+|-
T Consensus 509 -iaqsclapgfstmm-anlfa 527 (1103)
T KOG1420|consen 509 -IAQSCLAPGFSTMM-ANLFA 527 (1103)
T ss_pred -hHHHhhcccHHHHH-HHHHH
Confidence 77888888776655 45554
No 265
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.18 E-value=5 Score=45.68 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=60.6
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCchH-------------------H----HHhhhC--CCCEE-EccCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDR-------------------V----AIGRAL--DLPVY-FGDAG 1061 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~-------------------v----~~l~~~--g~~vi-~GDas 1061 (1158)
..+++|+|.|-+|..+++.|...|+ .++++|.|.-. + +++.+. +..+. +-+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i 109 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFI 109 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEeccc
Confidence 5689999999999999999999994 89999988322 1 111221 12222 12233
Q ss_pred CHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1062 d~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
+++...+.-..+.|+||.++++......+...+++.+
T Consensus 110 ~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ 146 (268)
T PRK15116 110 TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK 146 (268)
T ss_pred ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 4444444433479999999998777777777777764
No 266
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.15 E-value=3.2 Score=48.42 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=56.9
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCC-CCEEEccCCCHHHHH-----hcCccccCEEEEecCCc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALD-LPVYFGDAGSREVLH-----KVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g-~~vi~GDasd~e~L~-----~AgI~~A~~VIi~t~dd 1084 (1158)
.+.|+|.|.+|..++..|.+.|++|++.-.|++.++.+.+.. -+-+.++..-|..++ ..-++++|.+++.++..
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~ 82 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQ 82 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECChH
Confidence 577899999999999999999999999999999998886653 233555666655432 11234589998888875
No 267
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=83.08 E-value=11 Score=45.87 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc--CCChhhHHHHhhhccccchhhHHH
Q 001096 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVA 947 (1158)
Q Consensus 874 ~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~--g~~~real~lgL~La~rG~valvl 947 (1158)
..+++|+.-.--|+++|...+..++..+..+....++.-.+++....++. ++|+..++.+|..++|-.-+.+.-
T Consensus 63 ~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 63 LVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 36777777778899999999998876655444444444444444444444 889999999999988888766543
No 268
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=83.04 E-value=2.5 Score=43.25 Aligned_cols=92 Identities=26% Similarity=0.387 Sum_probs=61.0
Q ss_pred cccccCC-cccHHHHHHHHhhCCC--CEEEEeCCchHHHHh----hh----CCCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RA----LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g~--~VvVID~d~~~v~~l----~~----~g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
++.|+|. |.+|..++-.|...+. +++++|.++++.+.. .+ .+.+...+. .+ ...+++||.||+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~-----~~~~~~aDivvi 75 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GD-----YEALKDADIVVI 75 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SS-----GGGGTTESEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-cc-----ccccccccEEEE
Confidence 5789999 9999999999988765 799999998765422 11 123333332 22 233568999998
Q ss_pred ecCCc-----------hhhHH----HHHHHHhhCCCceEEEEec
Q 001096 1080 TLDTP-----------GANYR----TVWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1080 ~t~dd-----------~~Nl~----i~l~ar~l~p~~~IIara~ 1108 (1158)
+.+.+ ..|.. ++..+++.+|+..+++.++
T Consensus 76 tag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 76 TAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp TTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred eccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence 88764 34543 3456777788876555443
No 269
>PRK12828 short chain dehydrogenase; Provisional
Probab=83.04 E-value=2.3 Score=45.67 Aligned_cols=73 Identities=16% Similarity=0.067 Sum_probs=53.8
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHH----HhhhCCCCEEEccCCCHHHHHhcC------ccccCEEE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA----IGRALDLPVYFGDAGSREVLHKVG------AERACAAA 1078 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~----~l~~~g~~vi~GDasd~e~L~~Ag------I~~A~~VI 1078 (1158)
+.++|.| .|.+|+.+++.|.++|++|+++++|++... .....+..++.+|.+|.+.+.++- ....++|+
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 87 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDALV 87 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCEEE
Confidence 3466666 589999999999999999999999876543 233457788899999988775431 12567776
Q ss_pred EecC
Q 001096 1079 ITLD 1082 (1158)
Q Consensus 1079 i~t~ 1082 (1158)
-...
T Consensus 88 ~~ag 91 (239)
T PRK12828 88 NIAG 91 (239)
T ss_pred ECCc
Confidence 6543
No 270
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.02 E-value=2 Score=47.11 Aligned_cols=73 Identities=18% Similarity=0.066 Sum_probs=55.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
++++|.|. |.+|..+++.|.+.|++|+++++++++.+.+.. .+..++.+|.++++.++++- ..+.|+
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 89 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDI 89 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence 56777775 889999999999999999999999887654422 24678899999998876642 125677
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-..+
T Consensus 90 li~~ag 95 (258)
T PRK06949 90 LVNNSG 95 (258)
T ss_pred EEECCC
Confidence 776554
No 271
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=82.99 E-value=5.7 Score=38.98 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=48.5
Q ss_pred HHHHHhcCccccCEEEEecCCc---hhhHHHHHHHHhhCC-CceEEEEecChh-hHHHHHHCCCCeeecCCcHHHH
Q 001096 1063 REVLHKVGAERACAAAITLDTP---GANYRTVWALSKYFP-NVKTFVRAHDID-HGLNLEKAGATAVVPETLEPSL 1133 (1158)
Q Consensus 1063 ~e~L~~AgI~~A~~VIi~t~dd---~~Nl~i~l~ar~l~p-~~~IIara~d~e-~~~~L~~aGAd~VI~p~~~a~~ 1133 (1158)
++..+.+.-.++++|.+...+. .....++..+|+.+| +++|++--.-.. ..+.+++.|+|.++.+...+..
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~~~~~~ 115 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPATEAVE 115 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCHHHHHH
Confidence 3445666667888877776533 223456778888888 888777655443 3568999999999988664433
No 272
>PRK08655 prephenate dehydrogenase; Provisional
Probab=82.99 E-value=3.8 Score=49.78 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=49.9
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHH-HhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA-IGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~-~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.+.|+| .|.+|..++..|.+.|++|+++|.+++... ...+.|..+ . .+.+ + -+.++|.||++++.+...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~-~---~~~~---e-~~~~aDvVIlavp~~~~~ 72 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY-A---NDNI---D-AAKDADIVIISVPINVTE 72 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee-c---cCHH---H-HhccCCEEEEecCHHHHH
Confidence 367887 799999999999999999999999988764 334445421 1 1221 1 145789999999876443
No 273
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.95 E-value=2.7 Score=49.22 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=63.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEE-Ec-cCC------CHHHHHhcCccccCEEEEe
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVY-FG-DAG------SREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi-~G-Das------d~e~L~~AgI~~A~~VIi~ 1080 (1158)
..++.|+|.|.+|..++..|.+.| +++++..+++.++.+++.+.+.- .+ +.. -...+..+ ++++|.|+++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a-~~~aDlVila 84 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEA-ANCADVVVMG 84 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHH-HhcCCEEEEE
Confidence 346999999999999999999998 78888899999888876543211 11 110 00112221 4688999999
Q ss_pred cCCchhhHHHHHHHH-hhCCCceEEEEecChh
Q 001096 1081 LDTPGANYRTVWALS-KYFPNVKTFVRAHDID 1111 (1158)
Q Consensus 1081 t~dd~~Nl~i~l~ar-~l~p~~~IIara~d~e 1111 (1158)
++....-- ++..++ .+.++..++...+-.+
T Consensus 85 vps~~~~~-vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 85 VPSHGFRG-VLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred eCHHHHHH-HHHHHHhhcCCCCEEEEEEeCCc
Confidence 98653222 223333 3345555665555444
No 274
>PLN02712 arogenate dehydrogenase
Probab=82.91 E-value=6.8 Score=50.17 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=66.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
...+.|+|.|.+|..+++.|.+.|++|+++|++.+. +.+.+.|... . .+.+.+.. +.+|+||++++.. ...
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~-~---~~~~el~~---~~aDvVILavP~~-~~~ 439 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSY-F---SDADDLCE---EHPEVILLCTSIL-STE 439 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeE-e---CCHHHHHh---cCCCEEEECCChH-HHH
Confidence 356999999999999999999999999999998654 4455566532 1 23333221 3589999999864 333
Q ss_pred HHHHHHHh--hCCCceEEEEecCh--hhHHHHHH---CCCCee
Q 001096 1089 RTVWALSK--YFPNVKTFVRAHDI--DHGLNLEK---AGATAV 1124 (1158)
Q Consensus 1089 ~i~l~ar~--l~p~~~IIara~d~--e~~~~L~~---aGAd~V 1124 (1158)
.++..+.. ..|+ .+++-+-+. ...+.+++ .|.+.|
T Consensus 440 ~vi~~l~~~~lk~g-~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 440 KVLKSLPFQRLKRS-TLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred HHHHHHHHhcCCCC-cEEEECCCccHHHHHHHHHhccCCCceE
Confidence 33333332 2344 466655443 33344443 345544
No 275
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=82.88 E-value=2.4 Score=42.71 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=59.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHHHH-------------------h----hhC--C--CCEEEccC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAI-------------------G----RAL--D--LPVYFGDA 1060 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v~~-------------------l----~~~--g--~~vi~GDa 1060 (1158)
+.+++|+|.|.+|..+++.|...|. .++++|.|.=..+. + ++. + ...+.-+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 3579999999999999999999998 79999988332111 1 111 1 23444444
Q ss_pred CCHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1061 GSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1061 sd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
+.+...+.. +.+|.||.++++......+...+++.+
T Consensus 82 ~~~~~~~~~--~~~d~vi~~~d~~~~~~~l~~~~~~~~ 117 (135)
T PF00899_consen 82 DEENIEELL--KDYDIVIDCVDSLAARLLLNEICREYG 117 (135)
T ss_dssp SHHHHHHHH--HTSSEEEEESSSHHHHHHHHHHHHHTT
T ss_pred ccccccccc--cCCCEEEEecCCHHHHHHHHHHHHHcC
Confidence 333332222 578898888888777777777777775
No 276
>PRK07074 short chain dehydrogenase; Provisional
Probab=82.79 E-value=2.6 Score=46.25 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=54.9
Q ss_pred cccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh----CCCCEEEccCCCHHHHHhcCc------cccCEEEE
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKVGA------ERACAAAI 1079 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~----~g~~vi~GDasd~e~L~~AgI------~~A~~VIi 1079 (1158)
.++|.|. |.+|..+++.|.+.|.+|++++++++..+.+.+ ....++.+|..|++.+.++=- ...|.+|-
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~ 83 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVLVA 83 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4677775 789999999999999999999999887654432 346778999999998754321 24688777
Q ss_pred ecC
Q 001096 1080 TLD 1082 (1158)
Q Consensus 1080 ~t~ 1082 (1158)
...
T Consensus 84 ~ag 86 (257)
T PRK07074 84 NAG 86 (257)
T ss_pred CCC
Confidence 764
No 277
>PRK09903 putative transporter YfdV; Provisional
Probab=82.76 E-value=76 Score=36.72 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=62.8
Q ss_pred CCchHHHHHHHHHhhcccccccccC-chhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 001096 625 GGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVA 703 (1158)
Q Consensus 625 glP~VVG~ILaGILLGP~gLgli~~-~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll 703 (1158)
+-|.+++. ++|+++...++.+-+. .+.++.+++....+-||..|..+....++.. +..+...+.-.++..+ +.+..
T Consensus 172 ~nP~iia~-~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~-i~~~~ 248 (314)
T PRK09903 172 KEPVVWAP-VLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPL-ALLLV 248 (314)
T ss_pred hchHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHH-HHHHH
Confidence 45666665 4566665433332211 3456889999999999999999876655433 3333333334333322 22333
Q ss_pred HHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 001096 704 HFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1158)
Q Consensus 704 ~~llGls~~~AlllGaiLs~TS~aVVv~iL~el 736 (1158)
.+++|++.. ..-+..+.+...+++...++.+.
T Consensus 249 ~~~~~l~~~-~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 249 GMACHLNSE-HLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHcCCCcH-HHHHHHHHHcccHHHHHHHHHHH
Confidence 445677643 33455566777777777777544
No 278
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.69 E-value=76 Score=43.72 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001096 149 TTDELRELLMNAMKELEVAQLNSTMFE 175 (1158)
Q Consensus 149 ~~~~~~~~l~~~~~~~e~a~~~~~~~e 175 (1158)
..+.++.-|.....+|+.+.-=..-||
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye 340 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYE 340 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666555555
No 279
>PRK08265 short chain dehydrogenase; Provisional
Probab=82.65 E-value=1.9 Score=47.78 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=53.8
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC---CCCEEEccCCCHHHHHhcC------ccccCEEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~---g~~vi~GDasd~e~L~~Ag------I~~A~~VIi 1079 (1158)
+.++|.|. +.+|+.+++.|.+.|.+|++++++++..+.+.+. ...++.+|.+|++.++++= ..+.|++|-
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~ 86 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILVN 86 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 46777775 8899999999999999999999998766554322 3667889999998775431 135677765
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 87 ~a 88 (261)
T PRK08265 87 LA 88 (261)
T ss_pred CC
Confidence 43
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.62 E-value=4.3 Score=47.60 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=60.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
-..+.|.|.|-+|....+..+..|.+|+++|.++++.+.+++.|...+.-.. +++..++..-. +|++|.+..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~-~d~ii~tv~ 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEI-ADAIIDTVG 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhh-CcEEEECCC
Confidence 5679999999999999999999999999999999999999999876665433 66666655432 999988888
No 281
>PRK06483 dihydromonapterin reductase; Provisional
Probab=82.58 E-value=2.5 Score=45.82 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=53.6
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchH-HHHhhhCCCCEEEccCCCHHHHHhc------CccccCEEEEec
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKV------GAERACAAAITL 1081 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~-v~~l~~~g~~vi~GDasd~e~L~~A------gI~~A~~VIi~t 1081 (1158)
+.++|.|. +.+|+.+++.|.+.|.+|++++++++. .+.+++.+..++.+|.+|++.++++ .....|.+|-..
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 82 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNA 82 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECC
Confidence 45777775 669999999999999999999988754 3455556788899999998876542 112456666544
No 282
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=82.57 E-value=8.2 Score=41.84 Aligned_cols=126 Identities=21% Similarity=0.118 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcccchhHHHHHhHHhHH--HHHHHHHHHHHhcccChhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001096 848 LGAFLAGLLLAETEFSLQVESDIAPYR--GLLLGLFFMTVGMSIDPKLL---LSNFPVITGALGLLIGGKTILVALVGRL 922 (1158)
Q Consensus 848 LGAFvAGLiL~n~~~~~~l~e~l~~~~--~~flPlFFvliGm~idl~~L---~~~~~~vllllvl~ll~K~l~v~l~~~~ 922 (1158)
++++++|++++.....+ .+..+... .+..-+|++-+.+.-|-..+ ...-+..+.+-+..+++-+++.++..++
T Consensus 2 l~~li~Gi~lG~~~~~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP--FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc--ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766532211 11113332 34444455433333343232 2111224455566678888999999999
Q ss_pred cCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHH----HHHHHhHHHHHh
Q 001096 923 FGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLV----GISMALTPWLAA 981 (1158)
Q Consensus 923 ~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvV----VlS~IitPlL~~ 981 (1158)
.++++++++.++.++.....-+..+... .+++.-++.+++= +++.++.|++.|
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988866655444443331 2233333333332 345666788776
No 283
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=82.56 E-value=4.4 Score=45.49 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred ccccCC-cccHHHHHHHHhhCC--CCEEEEeCCc-----hHHHHhh-hCCCCEEEccCCCHHHHHhcCcc--ccCEEEEe
Q 001096 1012 IILCGF-GRVGQIIAQLLSERL--IPFVALDVRS-----DRVAIGR-ALDLPVYFGDAGSREVLHKVGAE--RACAAAIT 1080 (1158)
Q Consensus 1012 vVIiG~-G~vG~~Ia~~L~e~g--~~VvVID~d~-----~~v~~l~-~~g~~vi~GDasd~e~L~~AgI~--~A~~VIi~ 1080 (1158)
++|.|. |.+|..+++.|.+.+ ++|+++|... +..+.+. ..+..++.+|.+|++.+.++ ++ ++|+||-+
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~vi~~ 80 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRL-FTEHQPDAVVHF 80 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHH-HhhcCCCEEEEc
Confidence 577775 899999999998876 7899888532 1222221 12577889999999998776 33 37888877
Q ss_pred cC
Q 001096 1081 LD 1082 (1158)
Q Consensus 1081 t~ 1082 (1158)
..
T Consensus 81 a~ 82 (317)
T TIGR01181 81 AA 82 (317)
T ss_pred cc
Confidence 64
No 284
>PRK06924 short chain dehydrogenase; Provisional
Probab=82.51 E-value=2.2 Score=46.56 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=45.6
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCc-hHHHHhhh---CCCCEEEccCCCHHHHHh
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRA---LDLPVYFGDAGSREVLHK 1068 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~-~~v~~l~~---~g~~vi~GDasd~e~L~~ 1068 (1158)
+++|.| .|.+|+.+++.|.++|++|+++++++ +..+.+.+ .++.++.+|.++++.+++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 567777 58899999999999999999999887 44444332 246688999999988754
No 285
>PRK09072 short chain dehydrogenase; Provisional
Probab=82.45 E-value=1.9 Score=47.58 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=55.6
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-----CCCEEEccCCCHHHHHhcC-----ccccCEEE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSREVLHKVG-----AERACAAA 1078 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-----g~~vi~GDasd~e~L~~Ag-----I~~A~~VI 1078 (1158)
+.++|.| .|.+|..+++.|.++|+.|++++++++..+.+... ...++.+|.+|++.++++- ....|++|
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv 85 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLI 85 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4577887 48899999999999999999999998876655322 5677889999998765431 24578877
Q ss_pred EecC
Q 001096 1079 ITLD 1082 (1158)
Q Consensus 1079 i~t~ 1082 (1158)
...+
T Consensus 86 ~~ag 89 (263)
T PRK09072 86 NNAG 89 (263)
T ss_pred ECCC
Confidence 7654
No 286
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.43 E-value=3.7 Score=50.25 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=53.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHH-hhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI-GRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~-l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.++++|+|.|..|..+++.|.+.|..|++.|.+...... +.+.|+.++.|+-. ++. +++++.||..-.-+..|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-~~~-----~~~~d~vV~Spgi~~~~ 88 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEA-SDQ-----LDSFSLVVTSPGWRPDS 88 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc-hhH-----hcCCCEEEeCCCCCCCC
Confidence 456999999999999999999999999999987665543 35568888876332 222 24677777665444444
No 287
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.38 E-value=2.4 Score=48.48 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=53.6
Q ss_pred cccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh---hh-----CCCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG---RA-----LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1009 ~~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l---~~-----~g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
.+.++|.|. |-+|..+++.|.+.|++|+++..+++..... .. ..+.++.||.++++.++++ +++.|+||-
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDGCETVFH 83 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcCCCEEEE
Confidence 356788885 8899999999999999998887776543221 11 2467789999999988765 345788776
Q ss_pred ecC
Q 001096 1080 TLD 1082 (1158)
Q Consensus 1080 ~t~ 1082 (1158)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 653
No 288
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=82.36 E-value=8.5 Score=50.04 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHH--HHHHH
Q 001096 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVLQV 732 (1158)
Q Consensus 655 ~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllGaiLs~TS~a--VVv~i 732 (1158)
+..++.+++.....|+++|+..+.+ +...........+. -++.+....++.++++..++.+|.+++.=... ++...
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~-K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~ 387 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAV-KLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNT 387 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 4456778888888999999999988 22222222222222 22344444557899999999999988865553 44555
Q ss_pred HHhcCCCCch
Q 001096 733 LQERGESTSR 742 (1158)
Q Consensus 733 L~el~ll~s~ 742 (1158)
-.+.+..+.+
T Consensus 388 ~~~~~~~~~~ 397 (769)
T KOG1650|consen 388 GLDRKILSDE 397 (769)
T ss_pred HhhcCCcccc
Confidence 5666665544
No 289
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.36 E-value=79 Score=39.52 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=42.0
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001096 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1158)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~ 316 (1158)
.-...+.++..|..+.+.+|.+..+|+..++...+.|+.|+.+...--.+.+
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999999999888877655444433
No 290
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=82.34 E-value=1.6 Score=43.13 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=53.5
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEE-Ecc-------CCCHHHHHhcCccccCEEEEec
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVY-FGD-------AGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi-~GD-------asd~e~L~~AgI~~A~~VIi~t 1081 (1158)
+.++|+|.|.++.++.+.+++.|+++++|..+++......+.-.+++ .+. .+-+..++-+.-+.++.+.-..
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGy 82 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGY 82 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTS
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccccc
Confidence 56899999999999999999999999999999997644433322232 221 2223333444444555554444
Q ss_pred CCchhhHHHHHHHH
Q 001096 1082 DTPGANYRTVWALS 1095 (1158)
Q Consensus 1082 ~dd~~Nl~i~l~ar 1095 (1158)
+--..|...+....
T Consensus 83 g~lse~~~fa~~~~ 96 (110)
T PF00289_consen 83 GFLSENAEFAEACE 96 (110)
T ss_dssp STTTTHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 44455555544444
No 291
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.33 E-value=2.2 Score=46.34 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=55.6
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----CCCCEEEccCCCHHHHHhc------CccccCEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----~g~~vi~GDasd~e~L~~A------gI~~A~~V 1077 (1158)
+.++|.|. |.+|..+++.|.++|++|++++++++..+.+.+ ....++.+|.+|++.+.++ ...+.|.|
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 85 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDIL 85 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 35777775 789999999999999999999999877654422 2356889999999988654 12356887
Q ss_pred EEecC
Q 001096 1078 AITLD 1082 (1158)
Q Consensus 1078 Ii~t~ 1082 (1158)
|-...
T Consensus 86 i~~ag 90 (251)
T PRK07231 86 VNNAG 90 (251)
T ss_pred EECCC
Confidence 77664
No 292
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.30 E-value=2.2 Score=48.64 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=35.4
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHh
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l 1048 (1158)
.++.|+|.|.+|..++..|...|++|+++|.+++.++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 458899999999999999999999999999999987643
No 293
>PF13514 AAA_27: AAA domain
Probab=82.26 E-value=94 Score=42.46 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001096 158 MNAMKELEVAQLNSTMFEEKAQRISEA 184 (1158)
Q Consensus 158 ~~~~~~~e~a~~~~~~~e~~~~~~~~~ 184 (1158)
++..++++..+-.-..|+++++.+.+.
T Consensus 746 ~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 746 RELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777888899998888764
No 294
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=82.25 E-value=5.1 Score=49.20 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=55.0
Q ss_pred ccccCCcccHHHHHHHHhhC--CCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHh-------------cCccccCE
Q 001096 1012 IILCGFGRVGQIIAQLLSER--LIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK-------------VGAERACA 1076 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~--g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~-------------AgI~~A~~ 1076 (1158)
+.|+|.|.+|..++-.|.+. |++|+.+|.|+++++.+++.+.++ .++.-.+.+.+ ..+.+|++
T Consensus 4 I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~--~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPI--YEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCcc--CCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 78899999999999999988 478999999999999998776554 24444444432 12567999
Q ss_pred EEEecCCc
Q 001096 1077 AAITLDTP 1084 (1158)
Q Consensus 1077 VIi~t~dd 1084 (1158)
++++.+.+
T Consensus 82 i~I~V~TP 89 (473)
T PLN02353 82 VFVSVNTP 89 (473)
T ss_pred EEEEeCCC
Confidence 99987644
No 295
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.23 E-value=7.8 Score=44.15 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=35.6
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHh
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l 1048 (1158)
.++.|+|.|.+|..++..|...|++|+++|.+++..+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 43 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAG 43 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 458899999999999999999999999999999987664
No 296
>PLN02583 cinnamoyl-CoA reductase
Probab=82.22 E-value=3.4 Score=46.97 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=51.2
Q ss_pred cccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchH--H----HHhh--hCCCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDR--V----AIGR--ALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1009 ~~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~--v----~~l~--~~g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
.+.++|.|. |.+|..+++.|.++|++|+++.++.+. . ..+. ..++.++.+|.+|++.+.++ +.+++.|+-
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~-l~~~d~v~~ 84 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA-LKGCSGLFC 84 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH-HcCCCEEEE
Confidence 456888885 889999999999999999998875332 1 1111 12567889999999988765 345777664
No 297
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.22 E-value=5.9 Score=38.57 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=61.7
Q ss_pred HHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEec-CCc--hhhHHHHHHHHhhC
Q 001096 1022 QIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL-DTP--GANYRTVWALSKYF 1098 (1158)
Q Consensus 1022 ~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t-~dd--~~Nl~i~l~ar~l~ 1098 (1158)
..++..|++.|++|.++|.+.+. .+..+.+.-.+.+.|.+.+ -.. ..-..++..+|+.+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~ 79 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERN 79 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcC
Confidence 45678888889999999887644 3344445555788877765 333 23356677789999
Q ss_pred CCceEEEEecC--hhhHHHHHH-CCCCeeecCC
Q 001096 1099 PNVKTFVRAHD--IDHGLNLEK-AGATAVVPET 1128 (1158)
Q Consensus 1099 p~~~IIara~d--~e~~~~L~~-aGAd~VI~p~ 1128 (1158)
|+++|++=-.. ......+++ .|+|.|+.-+
T Consensus 80 p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 80 PNIPIVVGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp TTSEEEEEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred CCCEEEEECCchhcChHHHhccCcCcceecCCC
Confidence 99999988876 344455655 8999988644
No 298
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.21 E-value=9.2 Score=43.38 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=55.7
Q ss_pred cccccCCcccHHHHHHHHhhCC----CCEEEEeCCch-HHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERL----IPFVALDVRSD-RVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g----~~VvVID~d~~-~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
++.++|.|.+|..+++.|.+.| .++++.+++++ +.+.+.. .|... .. +... . ++++|+||+++.++
T Consensus 5 kI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~-~~---~~~e--~--~~~aDvVilav~p~ 76 (279)
T PRK07679 5 NISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKG-TH---NKKE--L--LTDANILFLAMKPK 76 (279)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceE-eC---CHHH--H--HhcCCEEEEEeCHH
Confidence 4788999999999999999887 68899998664 5566544 35432 22 2211 1 35789999999877
Q ss_pred hhhHHHHHHHHh-hCCCceEEEEe
Q 001096 1085 GANYRTVWALSK-YFPNVKTFVRA 1107 (1158)
Q Consensus 1085 ~~Nl~i~l~ar~-l~p~~~IIara 1107 (1158)
...- ++..++. ..++ ++++..
T Consensus 77 ~~~~-vl~~l~~~~~~~-~liIs~ 98 (279)
T PRK07679 77 DVAE-ALIPFKEYIHNN-QLIISL 98 (279)
T ss_pred HHHH-HHHHHHhhcCCC-CEEEEE
Confidence 4332 2233333 2344 444443
No 299
>PLN02712 arogenate dehydrogenase
Probab=82.19 E-value=4.4 Score=51.80 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=60.9
Q ss_pred ccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.+..+.|+|.|.+|..+++.|.+.|++|+++|++... +.+.+.|... ..+.+.+ -..++|+|+++++... .
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~----~~d~~e~---~~~~aDvViLavP~~~-~ 121 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSF----FLDPHDL---CERHPDVILLCTSIIS-T 121 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEE----eCCHHHH---hhcCCCEEEEcCCHHH-H
Confidence 3457999999999999999999999999999998443 4455566532 2233322 1235899999999653 2
Q ss_pred HHHHHHHH--hhCCCceEEEEecChh
Q 001096 1088 YRTVWALS--KYFPNVKTFVRAHDID 1111 (1158)
Q Consensus 1088 l~i~l~ar--~l~p~~~IIara~d~e 1111 (1158)
..++..+. ...|+ .+|+-+-+..
T Consensus 122 ~~vl~~l~~~~l~~g-~iVvDv~SvK 146 (667)
T PLN02712 122 ENVLKSLPLQRLKRN-TLFVDVLSVK 146 (667)
T ss_pred HHHHHhhhhhcCCCC-eEEEECCCCc
Confidence 33333232 23333 4666665544
No 300
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=82.13 E-value=59 Score=36.33 Aligned_cols=88 Identities=13% Similarity=0.001 Sum_probs=52.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHH
Q 001096 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI 971 (1158)
Q Consensus 892 ~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVl 971 (1158)
..+..+|..++..+.+..+.-+++.+..++++|.+. . +...+.||....-+.+.+..+.|-+..-...+++++-++
T Consensus 81 ~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~--i~~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~ 156 (226)
T TIGR00659 81 PQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP--E--IIASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLL 156 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--H--HHHHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 344444444444444444555667777788888873 2 233578999887777777777776544444444444455
Q ss_pred HHHhHHHHHhhh
Q 001096 972 SMALTPWLAAGG 983 (1158)
Q Consensus 972 S~IitPlL~~~~ 983 (1158)
..+++|.+.++.
T Consensus 157 Ga~~g~~ll~~~ 168 (226)
T TIGR00659 157 GTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHc
Confidence 566667666544
No 301
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=81.82 E-value=10 Score=43.63 Aligned_cols=115 Identities=29% Similarity=0.307 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHhhcccchhHHHHHhHHh-HHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHH
Q 001096 828 TLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAP-YRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGAL 905 (1158)
Q Consensus 828 iL~v~l~~a~lae~lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~-~~~~flPlFFvliGm~idl~~L~~~-~~~vllll 905 (1158)
-+..+|....+++.+.+||.+|=.+||++.+....+..-.+.+.+ +.++=..+....+|+.+.+..+... .+.+-..+
T Consensus 14 gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl 93 (408)
T COG4651 14 GLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGAL 93 (408)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHH
Confidence 355667777889999999999999999999854322222333433 3444455556678999888877653 11110111
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchh
Q 001096 906 GLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEF 943 (1158)
Q Consensus 906 vl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~v 943 (1158)
.- +..-....+...+..|+++-..+..|+.++.-+++
T Consensus 94 ~q-ia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV 130 (408)
T COG4651 94 AQ-IALATLLGMGLSSLLGWSFGTGIVFGLALSVASTV 130 (408)
T ss_pred HH-HHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHH
Confidence 11 11112222334556688887778777776655543
No 302
>PRK06482 short chain dehydrogenase; Provisional
Probab=81.74 E-value=2.3 Score=47.36 Aligned_cols=72 Identities=18% Similarity=0.050 Sum_probs=56.2
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh---CCCCEEEccCCCHHHHHhc------CccccCEEEE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~---~g~~vi~GDasd~e~L~~A------gI~~A~~VIi 1079 (1158)
+.++|.| .|.+|..+++.|.+.|+.|++++++++..+.+.+ .+..++.+|.+|++.++++ ...+.++||-
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS 82 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4578887 4789999999999999999999999887766543 2577889999999877653 1235688777
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 83 ~a 84 (276)
T PRK06482 83 NA 84 (276)
T ss_pred CC
Confidence 54
No 303
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.72 E-value=3.9 Score=49.55 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=57.2
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchH-H----HHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-V----AIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~-v----~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
+++|+|.|..|...++.|.+.|+.|.+.|.++.. . +.+++.|+.+..|...+.+.++. .+.+.+.||...+-+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~-~~~~~d~vv~s~gi~~ 80 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP-WLDQPDLVVVSPGIPW 80 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhH-HhhcCCEEEECCCCCC
Confidence 4789999999999999999999999999976532 2 24667799999988666543322 2456888888666654
Q ss_pred hh
Q 001096 1086 AN 1087 (1158)
Q Consensus 1086 ~N 1087 (1158)
.|
T Consensus 81 ~~ 82 (459)
T PRK02705 81 DH 82 (459)
T ss_pred CC
Confidence 44
No 304
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=81.71 E-value=2.2 Score=46.76 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=53.6
Q ss_pred ccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh---CCCCEEEccCCCHHHHHhc------CccccCEEEEec
Q 001096 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAITL 1081 (1158)
Q Consensus 1012 vVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~---~g~~vi~GDasd~e~L~~A------gI~~A~~VIi~t 1081 (1158)
++|.| .|.+|..+++.|.++|++|++++++++..+.+.+ .+...+.+|.++++.++++ .....|.+|...
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 56677 4789999999999999999999999887765533 2466788999999887653 113577877554
No 305
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.63 E-value=2.1 Score=46.53 Aligned_cols=73 Identities=11% Similarity=-0.011 Sum_probs=54.8
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhC--CCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~--g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
++++|.|. |.+|+.+++.|.++|+.+++++++++..... +.. ...++.+|.++++.++++- ..+.|+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 87 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDG 87 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 55777775 8999999999999999999999988765433 222 3677889999998875431 136788
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-..+
T Consensus 88 vi~~ag 93 (250)
T PRK12939 88 LVNNAG 93 (250)
T ss_pred EEECCC
Confidence 876654
No 306
>PRK06180 short chain dehydrogenase; Provisional
Probab=81.54 E-value=2.4 Score=47.37 Aligned_cols=73 Identities=14% Similarity=-0.026 Sum_probs=54.9
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC---CCCEEEccCCCHHHHHhcC------ccccCEEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~---g~~vi~GDasd~e~L~~Ag------I~~A~~VIi 1079 (1158)
+.++|.|. |.+|+.+++.|.++|++|++++++++..+.+.+. .+..+.+|.+|++.+.++= ..+.+++|-
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~ 84 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVN 84 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 34777775 7899999999999999999999999887666443 3667889999998875431 124567665
Q ss_pred ecC
Q 001096 1080 TLD 1082 (1158)
Q Consensus 1080 ~t~ 1082 (1158)
..+
T Consensus 85 ~ag 87 (277)
T PRK06180 85 NAG 87 (277)
T ss_pred CCC
Confidence 543
No 307
>PRK10711 hypothetical protein; Provisional
Probab=81.51 E-value=42 Score=37.59 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=56.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHH
Q 001096 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI 971 (1158)
Q Consensus 892 ~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVl 971 (1158)
..+..+|..+++.+.+..+.-+++.++.++++|.+.. +...|.||....-+.+.++.+.|-+..-....++++-++
T Consensus 82 ~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~ 157 (231)
T PRK10711 82 HQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGIL 157 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3444445444444455555566777788888888742 334578999888887888877776654444444455555
Q ss_pred HHHhHHHHHhhh
Q 001096 972 SMALTPWLAAGG 983 (1158)
Q Consensus 972 S~IitPlL~~~~ 983 (1158)
..+++|++.++.
T Consensus 158 Ga~~g~~llk~~ 169 (231)
T PRK10711 158 GAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHc
Confidence 667777777654
No 308
>PRK11281 hypothetical protein; Provisional
Probab=81.51 E-value=25 Score=47.60 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhh
Q 001096 196 WNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAEN 275 (1158)
Q Consensus 196 ~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1158)
..+.+.||+.++++-..+..+++--+ .+.-|.++++-|...++..+...+++.. +........+=|..+..-+.
T Consensus 62 ~~~l~~tL~~L~qi~~~~~~~~~L~k----~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~--~~~~~~Sl~qLEq~L~q~~~ 135 (1113)
T PRK11281 62 QQDLEQTLALLDKIDRQKEETEQLKQ----QLAQAPAKLRQAQAELEALKDDNDEETR--ETLSTLSLRQLESRLAQTLD 135 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHHHHH
Confidence 44566666666666555555443333 2333444455555555554443333321 11111122223333344445
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHHHHHHH
Q 001096 276 DIKECQANLANCETELRRLQSKKEELQKE 304 (1158)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~q~~ 304 (1158)
+..+.|++|+.-+.+|..+|++-+..|+.
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 55566666666666666666666655555
No 309
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=81.48 E-value=2.9 Score=49.65 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=31.3
Q ss_pred ccccccccC-CcccHHHHHHHHhhCCCCEEEEeCCc
Q 001096 1008 LQDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRS 1042 (1158)
Q Consensus 1008 l~~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~ 1042 (1158)
...++.|+| .|.+|..++..|.+.|++|+++|.++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 346789998 99999999999999999999999763
No 310
>PLN00016 RNA-binding protein; Provisional
Probab=81.47 E-value=4.4 Score=47.82 Aligned_cols=89 Identities=7% Similarity=-0.078 Sum_probs=60.6
Q ss_pred ccccccc----C-CcccHHHHHHHHhhCCCCEEEEeCCchHHH-----------HhhhCCCCEEEccCCCHHHHHhcCcc
Q 001096 1009 QDHIILC----G-FGRVGQIIAQLLSERLIPFVALDVRSDRVA-----------IGRALDLPVYFGDAGSREVLHKVGAE 1072 (1158)
Q Consensus 1009 ~~hvVIi----G-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~-----------~l~~~g~~vi~GDasd~e~L~~AgI~ 1072 (1158)
...++|+ | .|.+|..+++.|.+.|++|+++++++.... .+...|+.++.||..|.+.+. ...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~--~~~ 129 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV--AGA 129 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh--ccC
Confidence 3458888 5 599999999999999999999999876432 223457899999998833322 234
Q ss_pred ccCEEEEecCCchh-hHHHHHHHHhhCC
Q 001096 1073 RACAAAITLDTPGA-NYRTVWALSKYFP 1099 (1158)
Q Consensus 1073 ~A~~VIi~t~dd~~-Nl~i~l~ar~l~p 1099 (1158)
++|+||-+.+.+.. ...++..+++.+.
T Consensus 130 ~~d~Vi~~~~~~~~~~~~ll~aa~~~gv 157 (378)
T PLN00016 130 GFDVVYDNNGKDLDEVEPVADWAKSPGL 157 (378)
T ss_pred CccEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 68888776554422 2234445555543
No 311
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.43 E-value=91 Score=34.41 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHh
Q 001096 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNN 198 (1158)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~ 198 (1158)
+.++++-|.+++..+..+......+|.+...+...+=-+.+.|..|-..
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5677778888888887777788888877777776666666666655543
No 312
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.43 E-value=59 Score=36.30 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHH
Q 001096 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVH 221 (1158)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~ 221 (1158)
+.+.++-|++|+..+..+..+-.-||.+..+..+.+=-++..|..|-..=| |-.|++|+.
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~------------E~LAr~al~ 92 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN------------EDLAREALE 92 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHH
Confidence 567778888888888888888888988888888777777776666655444 566666655
No 313
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.33 E-value=2 Score=48.23 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=53.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhcC-----ccccCEE
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG-----AERACAA 1077 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~Ag-----I~~A~~V 1077 (1158)
++.++|.|.+.+|..+++.|. .|..|++++++++..+.. +..| ..++.+|.+|++.++++- ....|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 457889999999999999996 799999999987765433 2233 456789999998775441 1356777
Q ss_pred EEec
Q 001096 1078 AITL 1081 (1158)
Q Consensus 1078 Ii~t 1081 (1158)
|-..
T Consensus 81 i~nA 84 (275)
T PRK06940 81 VHTA 84 (275)
T ss_pred EECC
Confidence 7644
No 314
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=81.31 E-value=2.6 Score=49.14 Aligned_cols=71 Identities=15% Similarity=0.044 Sum_probs=52.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHH----HHhhh-------CCCCEEEccCCCHHHHHhcCccccCEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRV----AIGRA-------LDLPVYFGDAGSREVLHKVGAERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v----~~l~~-------~g~~vi~GDasd~e~L~~AgI~~A~~V 1077 (1158)
..++|.|. |-+|..+++.|.++|++|+++|+..... ..... ..+..+.||..|.+.|.++ ++++++|
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~-~~~~d~V 94 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA-CKNVDYV 94 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-hhCCCEE
Confidence 35888885 9999999999999999999999854321 11110 2366789999999888765 3457887
Q ss_pred EEec
Q 001096 1078 AITL 1081 (1158)
Q Consensus 1078 Ii~t 1081 (1158)
|=+.
T Consensus 95 iHlA 98 (348)
T PRK15181 95 LHQA 98 (348)
T ss_pred EECc
Confidence 6654
No 315
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.28 E-value=2.3 Score=45.09 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=43.6
Q ss_pred cccccccCCccc-HHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1009 QDHIILCGFGRV-GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1009 ~~hvVIiG~G~v-G~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
..+++|+|.|.+ |..+++.|.++|..|++++++.+. |. ..+.+||.||.+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~---------------------l~-~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN---------------------LK-EHTKQADIVIVAVGKPG 99 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh---------------------HH-HHHhhCCEEEEcCCCCc
Confidence 467999999995 888999999999999999976421 11 14668888888888874
No 316
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.16 E-value=16 Score=42.13 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=56.3
Q ss_pred ccccccCCc-ccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1010 DHIILCGFG-RVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1010 ~hvVIiG~G-~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
+.++|-|.| -+|+.++.++.++|-.++++|.|++..+.-. +..++.| +|.+-++-..+++.-.
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv--------------~~~~~~g--~~~~y~cdis~~eei~ 102 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETV--------------KEIRKIG--EAKAYTCDISDREEIY 102 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHH--------------HHHHhcC--ceeEEEecCCCHHHHH
Confidence 446666655 5999999999999999999999987654321 1233333 6666667777776667
Q ss_pred HHHHHHHhhCCCceEEE
Q 001096 1089 RTVWALSKYFPNVKTFV 1105 (1158)
Q Consensus 1089 ~i~l~ar~l~p~~~IIa 1105 (1158)
.++..+++...++.|++
T Consensus 103 ~~a~~Vk~e~G~V~ILV 119 (300)
T KOG1201|consen 103 RLAKKVKKEVGDVDILV 119 (300)
T ss_pred HHHHHHHHhcCCceEEE
Confidence 77777777776666554
No 317
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=81.16 E-value=5.4 Score=43.65 Aligned_cols=90 Identities=17% Similarity=0.061 Sum_probs=57.5
Q ss_pred ccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC--------CCC--EEEccCCCHHHHHhcCccccCEEEEe
Q 001096 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--------DLP--VYFGDAGSREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1012 vVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~--------g~~--vi~GDasd~e~L~~AgI~~A~~VIi~ 1080 (1158)
+.|+| .|.+|..++..|.+.|++|++.++++++.+.+... |+. +... ++.+. ++++|.||++
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~--~~~ea-----~~~aDvVila 75 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGA--DNAEA-----AKRADVVILA 75 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEe--ChHHH-----HhcCCEEEEE
Confidence 67897 89999999999999999999999999887665432 221 1111 11222 4478999999
Q ss_pred cCCchhhHHHHHHHHhhCCCceEEEEecCh
Q 001096 1081 LDTPGANYRTVWALSKYFPNVKTFVRAHDI 1110 (1158)
Q Consensus 1081 t~dd~~Nl~i~l~ar~l~p~~~IIara~d~ 1110 (1158)
+.....-- ++..++...++ ++++-+.+.
T Consensus 76 vp~~~~~~-~l~~l~~~l~~-~vvI~~~ng 103 (219)
T TIGR01915 76 VPWDHVLK-TLESLRDELSG-KLVISPVVP 103 (219)
T ss_pred CCHHHHHH-HHHHHHHhccC-CEEEEeccC
Confidence 98774322 22233333233 555555443
No 318
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=81.12 E-value=1.5 Score=46.10 Aligned_cols=97 Identities=20% Similarity=0.054 Sum_probs=62.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEcc------------------CCCHHHHHhcC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGD------------------AGSREVLHKVG 1070 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GD------------------asd~e~L~~Ag 1070 (1158)
..+++|+|.|++|+..++.+...|.+|+++|.++++.+.....+...+.=+ +..-+..-.--
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 468999999999999999999999999999999999888877766555443 23322222334
Q ss_pred ccccCEEEEec--CC-chhhHHHHHHHHhhCCCceEEEE
Q 001096 1071 AERACAAAITL--DT-PGANYRTVWALSKYFPNVKTFVR 1106 (1158)
Q Consensus 1071 I~~A~~VIi~t--~d-d~~Nl~i~l~ar~l~p~~~IIar 1106 (1158)
+..+|.+|... .+ ..-.+..-..++...|. .+|+-
T Consensus 100 i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvD 137 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVD 137 (168)
T ss_dssp HHH-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEE
T ss_pred HhhCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEE
Confidence 56788877533 22 22334445566666653 44443
No 319
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.12 E-value=3.3 Score=47.87 Aligned_cols=92 Identities=23% Similarity=0.209 Sum_probs=60.0
Q ss_pred cccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHHH-Hhh---hC----CC-CEEEccCCCHHHHHhcCccccCEEEEe
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA-IGR---AL----DL-PVYFGDAGSREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v~-~l~---~~----g~-~vi~GDasd~e~L~~AgI~~A~~VIi~ 1080 (1158)
++.|+|.|.+|..++-.+...|+ +|+++|.+++..+ ... +. .. .-+... .| +.. +.+||.||++
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t-~d---~~~--~~~aDiVIit 76 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGT-NN---YAD--TANSDIVVIT 76 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEec-CC---HHH--hCCCCEEEEc
Confidence 57899999999999999999876 8999999877543 111 11 11 112110 11 222 4689999999
Q ss_pred cCCc-----------hhhHHHHH----HHHhhCCCceEEEEec
Q 001096 1081 LDTP-----------GANYRTVW----ALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1081 t~dd-----------~~Nl~i~l----~ar~l~p~~~IIara~ 1108 (1158)
.+.+ ..|..+.. .+++..|+..+++-+|
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 8842 15665544 4666788866666555
No 320
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=81.10 E-value=3.7 Score=47.00 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=60.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.+.+||||||.+|+-.+..|+-.|-.|++-+.||-..-.+.-+|++|.. |+++ +.+++.+|.+|+.. |+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~t--------m~ea-~~e~difVTtTGc~--di 282 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTT--------LEEA-IREVDIFVTTTGCK--DI 282 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeee--------HHHh-hhcCCEEEEccCCc--ch
Confidence 4578999999999999999999999999999999998888888998875 3333 45678888888764 34
Q ss_pred HHHHHHHh
Q 001096 1089 RTVWALSK 1096 (1158)
Q Consensus 1089 ~i~l~ar~ 1096 (1158)
......++
T Consensus 283 i~~~H~~~ 290 (434)
T KOG1370|consen 283 ITGEHFDQ 290 (434)
T ss_pred hhHHHHHh
Confidence 44444443
No 321
>PRK08267 short chain dehydrogenase; Provisional
Probab=81.09 E-value=2.4 Score=46.65 Aligned_cols=72 Identities=17% Similarity=0.055 Sum_probs=54.9
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh----CCCCEEEccCCCHHHHHhc--C-----ccccCEEE
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKV--G-----AERACAAA 1078 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~----~g~~vi~GDasd~e~L~~A--g-----I~~A~~VI 1078 (1158)
.++|.| .|.+|..+++.|.+.|..|++++++++..+.+.+ ..+.++.+|.++.+.++++ + ..+.|+||
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi 82 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence 467777 4779999999999999999999999887765533 2477889999998877653 1 23457877
Q ss_pred EecC
Q 001096 1079 ITLD 1082 (1158)
Q Consensus 1079 i~t~ 1082 (1158)
-..+
T Consensus 83 ~~ag 86 (260)
T PRK08267 83 NNAG 86 (260)
T ss_pred ECCC
Confidence 6553
No 322
>PRK06179 short chain dehydrogenase; Provisional
Probab=81.06 E-value=2 Score=47.61 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=54.4
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC------ccccCEEEEecC
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag------I~~A~~VIi~t~ 1082 (1158)
+.++|.| .|.+|..+++.|.++|++|++++++++..+. ..++.++.+|.+|++.++++= ....|.+|...+
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag 82 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP--IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAG 82 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc--cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 3567777 5789999999999999999999998776543 246889999999998876641 124677766554
No 323
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.95 E-value=2.3 Score=46.29 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=54.1
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhC--CCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~--g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.++|++|++++++++..+.. ++. ....+..|.++++.++++- ....|+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 86 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGIDY 86 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45888886 8999999999999999999999987655333 222 3456789999998764321 135788
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
||-..+
T Consensus 87 vi~~ag 92 (250)
T PRK07774 87 LVNNAA 92 (250)
T ss_pred EEECCC
Confidence 886554
No 324
>PRK08177 short chain dehydrogenase; Provisional
Probab=80.90 E-value=2.8 Score=45.26 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=53.7
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-CCCCEEEccCCCHHHHHhcCc----cccCEEEEec
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGA----ERACAAAITL 1081 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-~g~~vi~GDasd~e~L~~AgI----~~A~~VIi~t 1081 (1158)
.++|.| .|.+|+.+++.|.++|+.|++++++++..+.+.+ .+..++.+|.+|++.++++-- .+.|.+|...
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcC
Confidence 466776 6889999999999999999999999877654433 367788899999876654311 2577877554
No 325
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=80.88 E-value=2.4 Score=49.93 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=53.1
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhc-CccccCEEEEecCC
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV-GAERACAAAITLDT 1083 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~A-gI~~A~~VIi~t~d 1083 (1158)
++|+|.|..|..+++.+.+.|++|+++|.+++..... .....+.+|..|++.+.+. .-.+.|+|+...++
T Consensus 2 ililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~ 72 (380)
T TIGR01142 2 VLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA 72 (380)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhh--hCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc
Confidence 6899999999999999999999999999998754322 2235677888898887554 22367887665554
No 326
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.59 E-value=2.8 Score=48.44 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=52.4
Q ss_pred cccccCC-cccHHHHHHHHhhCC--CCEEEEeCCchHHHHhh----hCCCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERL--IPFVALDVRSDRVAIGR----ALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g--~~VvVID~d~~~v~~l~----~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
.++|.|. |-+|..+++.|.++| ..|+++++++.....+. ..++.++.||.+|++.+.++ +++.|+||-+.
T Consensus 6 ~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-~~~iD~Vih~A 82 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA-LRGVDYVVHAA 82 (324)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH-HhcCCEEEECc
Confidence 4677775 889999999999886 68999998766543222 23567889999999998775 34578877654
No 327
>PRK06194 hypothetical protein; Provisional
Probab=80.53 E-value=2.3 Score=47.62 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=53.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhcCc------cccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVGA------ERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~AgI------~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.++|+.|+++|.+++..+.. ...+ +.++.+|.+|++.++++-- ...|+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~ 86 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVHL 86 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45778775 7799999999999999999999987655433 2223 4558999999988866411 24577
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
||-..+
T Consensus 87 vi~~Ag 92 (287)
T PRK06194 87 LFNNAG 92 (287)
T ss_pred EEECCC
Confidence 766553
No 328
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.39 E-value=1e+02 Score=44.16 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=94.9
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------H---HHHHHhch-hHHHHHHHhhhHhHHHHHHHHhHHHHHH
Q 001096 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQR-------I---SEAAIALK-DEAANAWNNVNVTLDMVHEIVNEECIAK 217 (1158)
Q Consensus 149 ~~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~-------~---~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~a~ 217 (1158)
.++.-++=||.|..|+|.+ -.+=|.|..+ + .|.-+.-+ ++....|.+.+.+++++|.....|.-+|
T Consensus 1523 ~le~e~~elQ~aLeElE~~---le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k 1599 (1930)
T KOG0161|consen 1523 RLEQEKEELQAALEELEAA---LEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSK 1599 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3455555566666666653 2222222222 1 12334444 4568999999999999999999888887
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHh
Q 001096 218 EAVHKA--TMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQ 295 (1158)
Q Consensus 218 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (1158)
..+-.. .|...+-|...++ +...... .|.-+-.++....+-..|.+..+|++...+--++++..+
T Consensus 1600 ~e~~r~KKkle~di~elE~~l--d~ank~~-----------~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~ae 1666 (1930)
T KOG0161|consen 1600 SEALRSKKKLEGDINELEIQL--DHANKAN-----------EDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAE 1666 (1930)
T ss_pred HHHHhhhhhhhcchHHHHHHH--HHHHHhh-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655433 2222233322222 1111110 112223334445566677778888887777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001096 296 SKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (1158)
Q Consensus 296 ~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~ 326 (1158)
.|...||.|...|.+..+.+.-+-..||.+.
T Consensus 1667 rr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~ 1697 (1930)
T KOG0161|consen 1667 RRLAALQAELEELREKLEALERARRQAELEL 1697 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777777777666666655555543
No 329
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=80.25 E-value=2.8 Score=51.25 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=55.6
Q ss_pred ccccccccCCcccHHHHHHHHhhCCCCEEEEeCCch---------------------HHHHhhhCCCCEEEccCCCHH-H
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-V 1065 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~---------------------~v~~l~~~g~~vi~GDasd~e-~ 1065 (1158)
..++++|+|.|..|...+..|...|++|+++|.++. ..+.+++.|+.++.+-....+ .
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 219 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS 219 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence 456899999999999999999999999999998752 345667788887765322111 1
Q ss_pred HHhcCccccCEEEEecCCc
Q 001096 1066 LHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1066 L~~AgI~~A~~VIi~t~dd 1084 (1158)
++.. ...+|.||++++..
T Consensus 220 ~~~~-~~~~D~vilAtGa~ 237 (467)
T TIGR01318 220 LDDL-LEDYDAVFLGVGTY 237 (467)
T ss_pred HHHH-HhcCCEEEEEeCCC
Confidence 2221 13689999999775
No 330
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=80.24 E-value=6.9 Score=45.50 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=63.3
Q ss_pred ccccccCCcccHHHHHHHHhhCCC--CEEEEeCCchHHHHh----hhC----CCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RAL----DLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~--~VvVID~d~~~v~~l----~~~----g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
.++.|+|.|.+|..++-.|...++ +++++|.++++.+.. ++. ....+.+ .+ .+. .++||.||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~---~~~--~~~adivIi 79 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD---YSD--CKDADLVVI 79 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC---HHH--hCCCCEEEE
Confidence 478999999999999999998888 799999988865322 221 1112222 22 222 568999999
Q ss_pred ecCCc-----------hhhHHH----HHHHHhhCCCceEEEEec
Q 001096 1080 TLDTP-----------GANYRT----VWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1080 ~t~dd-----------~~Nl~i----~l~ar~l~p~~~IIara~ 1108 (1158)
+.+-+ ..|..+ +..+++.+|+..+++-.+
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 87763 235444 556777889877766664
No 331
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.21 E-value=2.5 Score=46.11 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=55.2
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhh----h--CCCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A--LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~----~--~g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
++++|.| .|.+|..+++.|.++|++|++++++++..+... . ..+..+.+|.++++.+.++- ....++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 84 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVDI 84 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4678887 589999999999999999999999988665432 1 23567899999999875541 125678
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
||....
T Consensus 85 vi~~a~ 90 (258)
T PRK12429 85 LVNNAG 90 (258)
T ss_pred EEECCC
Confidence 776554
No 332
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.20 E-value=2.4 Score=46.62 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=54.4
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.+.|+.|++++++++..+.. ++.| +..+.+|.+|++.++++= ....|+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 90 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDI 90 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 56778875 8899999999999999999999998765433 2223 566789999988776542 124677
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-...
T Consensus 91 li~~ag 96 (255)
T PRK07523 91 LVNNAG 96 (255)
T ss_pred EEECCC
Confidence 776664
No 333
>PLN00106 malate dehydrogenase
Probab=80.01 E-value=4.4 Score=47.34 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=64.8
Q ss_pred cccccccCC-cccHHHHHHHHhhCCC--CEEEEeCCchHHH--HhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCC
Q 001096 1009 QDHIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVA--IGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1009 ~~hvVIiG~-G~vG~~Ia~~L~e~g~--~VvVID~d~~~v~--~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
...+.|+|. |.+|..++..|...+. +++++|.++...+ .+.+...+....+.++...+. ..++++|+||++.+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~-~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLG-DALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHH-HHcCCCCEEEEeCCC
Confidence 458999999 9999999999986555 7999999882211 122222232333311111121 246689999999887
Q ss_pred c-----------hhhHH----HHHHHHhhCCCceEEEEecChh
Q 001096 1084 P-----------GANYR----TVWALSKYFPNVKTFVRAHDID 1111 (1158)
Q Consensus 1084 d-----------~~Nl~----i~l~ar~l~p~~~IIara~d~e 1111 (1158)
+ ..|.. ++..+++.+|+..+++.+|=.+
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 4 24543 4557888899876666555444
No 334
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=80.01 E-value=45 Score=39.58 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHH
Q 001096 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFG 949 (1158)
Q Consensus 874 ~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ 949 (1158)
++++=|+.|+-+|..+|+.-+..++...++.-....++-++ +++.+.++|++.+|+..+|.+-..-|-.++.+.+
T Consensus 104 ~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~-t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~ 178 (399)
T TIGR03136 104 NSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFA-TLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASL 178 (399)
T ss_pred cccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHH-HHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHH
Confidence 46888999999999999999988766544323444555444 3455556799999999999998888888777655
No 335
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.98 E-value=1.6 Score=39.80 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=31.0
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR 1044 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~ 1044 (1158)
+++|+|.|..|-.++..|.+.|.+|++|+.++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4789999999999999999999999999987553
No 336
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=79.97 E-value=2.7 Score=46.20 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=54.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC---CCCEEEccCCCHHHHHhcC------ccccCEEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~---g~~vi~GDasd~e~L~~Ag------I~~A~~VIi 1079 (1158)
+.++|.|. |.+|..+++.|.++|+.|++++.+.+..+...+. ....+.+|.+|++.+.++= ....|++|-
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~ 86 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFN 86 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 35777774 8899999999999999999999998877654332 3567789999998875531 135677766
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 87 ~a 88 (257)
T PRK07067 87 NA 88 (257)
T ss_pred CC
Confidence 44
No 337
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.96 E-value=2.7 Score=46.11 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=54.9
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC----CCCEEEccCCCHHHHHhcC------ccccCEEE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSREVLHKVG------AERACAAA 1078 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~----g~~vi~GDasd~e~L~~Ag------I~~A~~VI 1078 (1158)
++++|.| .|.+|..+++.|.++|+.|++++++++..+...+. .+.++.+|.++++.+.++= ..+.|+||
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 91 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLV 91 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 4677776 58899999999999999999999998766554332 3467899999999876531 13678887
Q ss_pred EecC
Q 001096 1079 ITLD 1082 (1158)
Q Consensus 1079 i~t~ 1082 (1158)
-...
T Consensus 92 ~~ag 95 (264)
T PRK12829 92 NNAG 95 (264)
T ss_pred ECCC
Confidence 6553
No 338
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.87 E-value=2.5 Score=45.75 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=53.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEE-eCCchHHHHhhh----C--CCCEEEccCCCHHHHHhcC------ccccC
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVAL-DVRSDRVAIGRA----L--DLPVYFGDAGSREVLHKVG------AERAC 1075 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVI-D~d~~~v~~l~~----~--g~~vi~GDasd~e~L~~Ag------I~~A~ 1075 (1158)
+.++|.|. |.+|..+++.|.+.|++++++ +++++..+.+.+ . ...++.+|.++++.+.++= ....|
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKID 85 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 46777775 899999999999999999999 988876644322 1 3567889999999875531 12577
Q ss_pred EEEEecC
Q 001096 1076 AAAITLD 1082 (1158)
Q Consensus 1076 ~VIi~t~ 1082 (1158)
+||...+
T Consensus 86 ~vi~~ag 92 (247)
T PRK05565 86 ILVNNAG 92 (247)
T ss_pred EEEECCC
Confidence 7776553
No 339
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.82 E-value=10 Score=43.27 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=34.5
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~ 1047 (1158)
+++.|+|.|.+|..++..|...|++|+++|.+++..+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 35889999999999999999999999999999988753
No 340
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.80 E-value=2.5 Score=47.19 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=68.4
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
+.||+|+|.|.+|.-+++.|.+.|+ ..++||.|.-.+....+ ..+...||.-. + .-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NR-Qi~A~~~~iGk---------------------~-Kv 86 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNR-QIHALLGDIGK---------------------P-KV 86 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccch-hhHhhhhhccc---------------------H-HH
Confidence 5699999999999999999999998 79999987544432211 11111121111 1 11
Q ss_pred HHHHHHHHhhCCCceEEEEec--ChhhHHHHHHCCCCeeecCCcHH
Q 001096 1088 YRTVWALSKYFPNVKTFVRAH--DIDHGLNLEKAGATAVVPETLEP 1131 (1158)
Q Consensus 1088 l~i~l~ar~l~p~~~IIara~--d~e~~~~L~~aGAd~VI~p~~~a 1131 (1158)
-.+...++.+||+++|-++.. ++++.+.|-.-+-|+||..-...
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v 132 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSV 132 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhh
Confidence 245667888999988766654 67788888777999998654433
No 341
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.77 E-value=2.7 Score=46.89 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=52.8
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-------CCCCEEEccCCCHHHHHhcC-----ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVG-----AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-------~g~~vi~GDasd~e~L~~Ag-----I~~A~~ 1076 (1158)
+.++|.|. +.+|+.+++.|.++|.+|++++++++..+...+ ....++.+|.+|++.++++- ....|.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~ 88 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPDI 88 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCcE
Confidence 45777876 579999999999999999999999877654422 13567889999998765441 124566
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|...
T Consensus 89 lv~na 93 (263)
T PRK08339 89 FFFST 93 (263)
T ss_pred EEECC
Confidence 66554
No 342
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=79.74 E-value=2.7 Score=49.50 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=77.9
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i 1090 (1158)
.+-|+|.|.+|+.++..-.+.|++|+++|++++....- -.-.++.++..|++.++++- +++|+ +|.+-...+...
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~--va~~~i~~~~dD~~al~ela-~~~DV--iT~EfE~V~~~a 77 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQ--VADRVIVAAYDDPEALRELA-AKCDV--ITYEFENVPAEA 77 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhh--cccceeecCCCCHHHHHHHH-hhCCE--EEEeeccCCHHH
Confidence 36789999999999999999999999999998865322 23457788888999999874 45665 466665444443
Q ss_pred HHHH---HhhCCCceEEEEecChh-hHHHHHHCCCC
Q 001096 1091 VWAL---SKYFPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1158)
Q Consensus 1091 ~l~a---r~l~p~~~IIara~d~e-~~~~L~~aGAd 1122 (1158)
...+ -...|+...+....|+- ....|+++|+.
T Consensus 78 L~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~ 113 (375)
T COG0026 78 LEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLP 113 (375)
T ss_pred HHHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCC
Confidence 3333 34567777777777764 56667778854
No 343
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=79.68 E-value=2.9 Score=48.93 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=66.9
Q ss_pred ccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHHHH
Q 001096 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~ 1091 (1158)
+.|+|.|..++.+++.+++.|++|+++|.+++.... +..-..+.+|..|++.+.+.- +.++.+ +.+.+..+....
T Consensus 2 igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~--~~ad~~~~~~~~d~~~i~~~a-~~~dvi--t~e~e~i~~~~l 76 (352)
T TIGR01161 2 VGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAV--QVADHVVLAPFFDPAAIRELA-ESCDVI--TFEFEHVDVEAL 76 (352)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChh--HhCceeEeCCCCCHHHHHHHH-hhCCEE--EeCcCcCCHHHH
Confidence 568999999999999999999999999998765432 222345688999999887753 345553 444333333233
Q ss_pred HHHHhh----CCCceEEEEecCh-hhHHHHHHCCCC
Q 001096 1092 WALSKY----FPNVKTFVRAHDI-DHGLNLEKAGAT 1122 (1158)
Q Consensus 1092 l~ar~l----~p~~~IIara~d~-e~~~~L~~aGAd 1122 (1158)
..+.+. .|+...+..+.|. .....|+++|+.
T Consensus 77 ~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip 112 (352)
T TIGR01161 77 EKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLP 112 (352)
T ss_pred HHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCC
Confidence 333332 2444444444443 344556677765
No 344
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.67 E-value=3.5 Score=45.38 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=55.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh-hCCCCEEEccCCCHHHHHhcC------ccccCEEEEec
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVG------AERACAAAITL 1081 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~-~~g~~vi~GDasd~e~L~~Ag------I~~A~~VIi~t 1081 (1158)
+.++|.|. |.+|..+++.|.++|+.|++++.+++..+... +.+..++..|.++++.++++- ..+.|.+|-..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFNNA 87 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 46888887 88999999999999999999999987765443 334568889999988765432 13567776655
Q ss_pred C
Q 001096 1082 D 1082 (1158)
Q Consensus 1082 ~ 1082 (1158)
+
T Consensus 88 g 88 (255)
T PRK06057 88 G 88 (255)
T ss_pred C
Confidence 3
No 345
>PRK07825 short chain dehydrogenase; Provisional
Probab=79.62 E-value=3 Score=46.31 Aligned_cols=72 Identities=10% Similarity=-0.114 Sum_probs=53.9
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh-hC-CCCEEEccCCCHHHHHhcC------ccccCEEEEe
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-AL-DLPVYFGDAGSREVLHKVG------AERACAAAIT 1080 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~-~~-g~~vi~GDasd~e~L~~Ag------I~~A~~VIi~ 1080 (1158)
+.++|.|. |.+|+.+++.|.++|++|++.++++++.+... .. ...++.+|.+|++.++++= ....|.+|..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 85 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNN 85 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 35788875 77999999999999999999999988876543 22 3778899999998764321 1346777654
Q ss_pred c
Q 001096 1081 L 1081 (1158)
Q Consensus 1081 t 1081 (1158)
.
T Consensus 86 a 86 (273)
T PRK07825 86 A 86 (273)
T ss_pred C
Confidence 3
No 346
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=79.53 E-value=3.2 Score=47.99 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=51.0
Q ss_pred cccccCC-cccHHHHHHHHhhCCCCEEEEeCCchH-----HHHhh-------hCCCCEEEccCCCHHHHHhcCcc-ccCE
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDR-----VAIGR-------ALDLPVYFGDAGSREVLHKVGAE-RACA 1076 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~-----v~~l~-------~~g~~vi~GDasd~e~L~~AgI~-~A~~ 1076 (1158)
.++|.|. |-+|..+++.|.+.|++|++++++++. ...+. ..++.++.||.+|++.+.++=-. +.|+
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ 81 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPTE 81 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCCE
Confidence 4677775 889999999999999999999987542 22221 23578899999999887654221 3566
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
||=+.
T Consensus 82 ViH~A 86 (343)
T TIGR01472 82 IYNLA 86 (343)
T ss_pred EEECC
Confidence 66444
No 347
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.48 E-value=3.8 Score=46.65 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=54.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh----CC--CCEEEccCCCHHHHHhc------CccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----LD--LPVYFGDAGSREVLHKV------GAERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~----~g--~~vi~GDasd~e~L~~A------gI~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.++|++|++++++.+..+.+.+ .+ ..++.+|.+|++.+.++ .....|.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~ 120 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDI 120 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45777775 889999999999999999999999877654422 22 45778999998876543 1236788
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|-..
T Consensus 121 li~~A 125 (293)
T PRK05866 121 LINNA 125 (293)
T ss_pred EEECC
Confidence 77654
No 348
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.29 E-value=7 Score=48.36 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=71.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCC-------------HHHH------Hhc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS-------------REVL------HKV 1069 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd-------------~e~L------~~A 1069 (1158)
...++|+|.|..|...+..++..|..|+++|.++++.+.++..|..++.=|..+ .+.. -.-
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998888888876555321 1211 111
Q ss_pred CccccCEEEEec---CCchhhHHHHHHHHhhCCCceEEEEecC
Q 001096 1070 GAERACAAAITL---DTPGANYRTVWALSKYFPNVKTFVRAHD 1109 (1158)
Q Consensus 1070 gI~~A~~VIi~t---~dd~~Nl~i~l~ar~l~p~~~IIara~d 1109 (1158)
.++++|.+|.+. +.+.--+.....++...|...|+=.+.|
T Consensus 244 ~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 256799998887 3322234455557777776555534333
No 349
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.92 E-value=3.4 Score=47.80 Aligned_cols=93 Identities=19% Similarity=0.181 Sum_probs=62.8
Q ss_pred cccccCCcccHHHHHHHHhhCC--CCEEEEeCCchHHHH----hhhCC----CCEEEccCCCHHHHHhcCccccCEEEEe
Q 001096 1011 HIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAI----GRALD----LPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g--~~VvVID~d~~~v~~----l~~~g----~~vi~GDasd~e~L~~AgI~~A~~VIi~ 1080 (1158)
.+.|+|.|.+|..++..|...| .+++++|.++++.+. +.+.. ...++. .+. + .+.+||.+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d~---~--~l~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GDY---A--DCKGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CCH---H--HhCCCCEEEEc
Confidence 3789999999999999999988 589999999887652 22111 011121 222 2 26789999999
Q ss_pred cCCch-----------hhHH----HHHHHHhhCCCceEEEEecCh
Q 001096 1081 LDTPG-----------ANYR----TVWALSKYFPNVKTFVRAHDI 1110 (1158)
Q Consensus 1081 t~dd~-----------~Nl~----i~l~ar~l~p~~~IIara~d~ 1110 (1158)
.+.+. .|.. ++..+++.+|+..+++..+-.
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~ 119 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV 119 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 87641 2433 455667778887777776533
No 350
>PLN02214 cinnamoyl-CoA reductase
Probab=78.79 E-value=4 Score=47.49 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=54.4
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHH-----Hhhh--CCCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVA-----IGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~-----~l~~--~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
+.++|.|. |-+|..+++.|.++|++|+++.++.+... .+.. ..+.++.||.++++.+.++ ++.+|+||-+.
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~Vih~A 89 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA-IDGCDGVFHTA 89 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH-HhcCCEEEEec
Confidence 45888887 89999999999999999999988766421 1111 1356788999999988765 34578887766
Q ss_pred C
Q 001096 1082 D 1082 (1158)
Q Consensus 1082 ~ 1082 (1158)
.
T Consensus 90 ~ 90 (342)
T PLN02214 90 S 90 (342)
T ss_pred C
Confidence 4
No 351
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=78.74 E-value=3.7 Score=44.50 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=53.3
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHH----HhhhC--CCCEEEccCCCHHHHHhcC--c----cccCE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA----IGRAL--DLPVYFGDAGSREVLHKVG--A----ERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~----~l~~~--g~~vi~GDasd~e~L~~Ag--I----~~A~~ 1076 (1158)
+.++|.| .|.+|..+++.|.++|+.|++++++++... .++.. .+.++.+|.+|++.++++= + ...++
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 86 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRLDI 86 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 3567777 689999999999999999999999965443 23333 3667889999998876641 1 25777
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
||-..
T Consensus 87 vi~~a 91 (251)
T PRK12826 87 LVANA 91 (251)
T ss_pred EEECC
Confidence 76665
No 352
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.73 E-value=1.4e+02 Score=37.85 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=89.4
Q ss_pred hHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcc
Q 001096 190 DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATM----ALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKE 265 (1158)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1158)
|++...-..++.-+|.+.+++..|..|+.-|.+... .+.-++...+....-++-.++.+.-.+.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~------------ 345 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNES------------ 345 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch------------
Confidence 456666677888899999999999999988876544 3445555555555555555443332222
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001096 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1158)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~ 345 (1158)
|-+.....++++.+++..+..++..+...+..-.++|++.+.+.+.-+..+..-.+-.+.+. ..-..|.+|-+
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~-------~Lrk~E~eAr~ 418 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ-------GLRKDELEARE 418 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 23345555555666555555555555444444555555555544443333332222222222 33345666666
Q ss_pred hcccHHHHHHHHHHhhcCCCC
Q 001096 346 RVNDAEIALQRAEKSLSNSSV 366 (1158)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~ 366 (1158)
.+......|.....-+..++.
T Consensus 419 kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 666666666655555555543
No 353
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.63 E-value=4.6 Score=46.19 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=35.3
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~ 1047 (1158)
.++.|+|.|.+|..++..+...|++|+++|.+++..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 36889999999999999999999999999999998776
No 354
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.54 E-value=3.4 Score=49.87 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=54.4
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHHHHh-hhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v~~l-~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
...++|+|.|.+|+.++..|...|. +++++++++++...+ ...|..++ +.+.+.+ .+.++|.||.+|+.+..
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~-~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAI-----PLDELPE-ALAEADIVISSTGAPHP 255 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEe-----eHHHHHH-HhccCCEEEECCCCCCc
Confidence 3578999999999999999999997 799999999887655 33343322 2233332 24579999999988754
Q ss_pred hH
Q 001096 1087 NY 1088 (1158)
Q Consensus 1087 Nl 1088 (1158)
.+
T Consensus 256 ~i 257 (423)
T PRK00045 256 II 257 (423)
T ss_pred EE
Confidence 43
No 355
>PRK07831 short chain dehydrogenase; Provisional
Probab=78.43 E-value=3.5 Score=45.52 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=53.2
Q ss_pred ccccccCC-c-ccHHHHHHHHhhCCCCEEEEeCCchHHHHhh----h-C---CCCEEEccCCCHHHHHhcC------ccc
Q 001096 1010 DHIILCGF-G-RVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A-L---DLPVYFGDAGSREVLHKVG------AER 1073 (1158)
Q Consensus 1010 ~hvVIiG~-G-~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~----~-~---g~~vi~GDasd~e~L~~Ag------I~~ 1073 (1158)
+.++|.|. | .+|..+++.|.++|..|++++++.++.+... + . .+..+.+|.++++.++++= ...
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 97 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLGR 97 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56888887 5 5999999999999999999999887654432 1 1 3557789999987665321 135
Q ss_pred cCEEEEecC
Q 001096 1074 ACAAAITLD 1082 (1158)
Q Consensus 1074 A~~VIi~t~ 1082 (1158)
.|++|-..+
T Consensus 98 id~li~~ag 106 (262)
T PRK07831 98 LDVLVNNAG 106 (262)
T ss_pred CCEEEECCC
Confidence 677766654
No 356
>PRK10263 DNA translocase FtsK; Provisional
Probab=78.42 E-value=29 Score=47.21 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=20.2
Q ss_pred hCchHHHHHHHHHHhhcccchhHHHHHhHHhHHHHHHHHHHHHHhcc
Q 001096 842 AGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMS 888 (1158)
Q Consensus 842 lGls~vLGAFvAGLiL~n~~~~~~l~e~l~~~~~~flPlFFvliGm~ 888 (1158)
-+.-+.+|++++++++.- -.+..+++|++|++.+..
T Consensus 61 ~Nl~GiVGA~LAD~L~~L-----------FGl~AYLLP~LL~~~a~~ 96 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFFI-----------FGVMAYTIPVIIVGGCWF 96 (1355)
T ss_pred ccccchHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHH
Confidence 345566788877776541 112445666665555543
No 357
>COG0679 Predicted permeases [General function prediction only]
Probab=78.33 E-value=1.4e+02 Score=34.68 Aligned_cols=107 Identities=22% Similarity=0.277 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHhhccccccccc-CchhHHHHHHHHHHHHHHHHHhcCChhHHHhchhhHHHHHHH-HHHHHHHHHHHH
Q 001096 625 GGSPVLGYLAAGILIGPYGLSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA-QVLVTAVVVGLV 702 (1158)
Q Consensus 625 glP~VVG~ILaGILLGP~gLgli~-~~~~l~~LaeLGLi~LLF~aGLelDl~~Lrr~~k~il~Lai~-gvllt~iivgll 702 (1158)
+.|++++. +.|+++...++.+-+ -....+.+++....+.|+..|+.++....++...+....+.. -.++.. ++.+.
T Consensus 167 ~nP~i~a~-i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~P-l~~~~ 244 (311)
T COG0679 167 TNPLIIAL-ILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAP-LVALL 244 (311)
T ss_pred hCcHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHH-HHHHH
Confidence 56766665 557777654444322 234568999999999999999999997777776665555554 333332 24445
Q ss_pred HHHHhCCChHHHHHHhhccccCcHHHHHHHHH
Q 001096 703 AHFVSGLPGPASIVIGNGLALSSTAVVLQVLQ 734 (1158)
Q Consensus 703 l~~llGls~~~AlllGaiLs~TS~aVVv~iL~ 734 (1158)
...++|++.... ....+.+...+++..-++.
T Consensus 245 ~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a 275 (311)
T COG0679 245 VAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLA 275 (311)
T ss_pred HHHHcCCChHHH-HHHHHHhhCcHHhHHHHHH
Confidence 566778876544 3333344445555444443
No 358
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.32 E-value=11 Score=41.48 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=57.3
Q ss_pred cccc-CCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1012 IILC-GFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1012 vVIi-G~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
++|. |-|.+|+.+++.|.++|++|+++-++++....+. .++.+..+|..++..|..+-- ..+.++.+..
T Consensus 3 ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~-G~~~~~~i~~ 72 (275)
T COG0702 3 ILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAK-GVDGVLLISG 72 (275)
T ss_pred EEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhc-cccEEEEEec
Confidence 3444 4799999999999999999999999999998888 899999999999999988743 3444444444
No 359
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.29 E-value=2.9 Score=45.98 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=53.6
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh----C--CCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----L--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~----~--g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. +.+|..+++.|.++|.+|++++++++..+...+ . ....+.+|.+|++.++++= ....|.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 89 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDI 89 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45777886 779999999999999999999999887654432 2 3456789999998875541 135677
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|-..
T Consensus 90 lv~~a 94 (253)
T PRK05867 90 AVCNA 94 (253)
T ss_pred EEECC
Confidence 76543
No 360
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.09 E-value=3.3 Score=44.99 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=53.5
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhc------CccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKV------GAERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~A------gI~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.++|..|++++.++++.+.. +..+ ...+..|.++++.++++ .....|+
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 85 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLNG 85 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46888887 9999999999999999999999998765433 2223 45688999998776431 1235677
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-..+
T Consensus 86 vi~~ag 91 (253)
T PRK08217 86 LINNAG 91 (253)
T ss_pred EEECCC
Confidence 776543
No 361
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=78.07 E-value=3.7 Score=45.34 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=54.1
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC---CCCEEEccCCCHHHHHhc------CccccCEEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~---g~~vi~GDasd~e~L~~A------gI~~A~~VIi 1079 (1158)
+.++|.|. +.+|..+++.|.+.|++|++++++++..+.+.+. ...++.+|.+|++.++++ ...+.|++|-
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~ 86 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVG 86 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45777776 5699999999999999999999998887666432 356788999998876543 1235667664
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 87 ~a 88 (263)
T PRK06200 87 NA 88 (263)
T ss_pred CC
Confidence 43
No 362
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.99 E-value=3.3 Score=45.93 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=52.9
Q ss_pred ccccccCCc-ccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGFG-RVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~G-~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|.+ .+|..+++.|.++|++|++++++++..+.+.+ .++.++.+|.++++.+.++- ..+.|+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 90 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLDI 90 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 457777765 59999999999999999999999876554322 24567789999999876431 135677
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|-..
T Consensus 91 vi~~A 95 (263)
T PRK07814 91 VVNNV 95 (263)
T ss_pred EEECC
Confidence 76543
No 363
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.95 E-value=3.3 Score=45.40 Aligned_cols=73 Identities=11% Similarity=-0.001 Sum_probs=53.4
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.++|++|++++++++..+.. ++.+ ..++.+|.++++.++++= ....|+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 87 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDI 87 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45777776 8899999999999999999999998655433 2333 445789999999876531 124677
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
||-...
T Consensus 88 vi~~ag 93 (262)
T PRK13394 88 LVSNAG 93 (262)
T ss_pred EEECCc
Confidence 766553
No 364
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.89 E-value=2.8 Score=45.68 Aligned_cols=71 Identities=8% Similarity=-0.034 Sum_probs=52.5
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-------CCCCEEEccCCCHHHHHhcC--c-cccCEEEE
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVG--A-ERACAAAI 1079 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-------~g~~vi~GDasd~e~L~~Ag--I-~~A~~VIi 1079 (1158)
.++|.| .|.+|..+++.|.++|+.|++++++++..+...+ ..+.++.+|.++++.++++- + .+.+++|.
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~ 82 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVLI 82 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEE
Confidence 466776 6889999999999999999999999876654321 24678899999998776531 1 23578775
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 83 ~a 84 (243)
T PRK07102 83 AV 84 (243)
T ss_pred CC
Confidence 43
No 365
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.84 E-value=13 Score=42.24 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=56.6
Q ss_pred cccccCCcccHHHHHHHHhhCC----CCEEEEeCCc-hHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1011 HIILCGFGRVGQIIAQLLSERL----IPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g----~~VvVID~d~-~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
++.++|.|.+|..++..|.+.+ .+++++++++ ++.+.+......+.. ..+.. ++ ++++|.||+++....
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~--~~~~~---e~-~~~aDvVilavpp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL--ADNEA---EI-FTKCDHSFICVPPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE--eCCHH---HH-HhhCCEEEEecCHHH
Confidence 3778999999999999999887 6899999865 334444332111111 11222 11 347899999998553
Q ss_pred hhHHHHHHHHhh-CCCceEEEEecChhhHHHHHH
Q 001096 1086 ANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l-~p~~~IIara~d~e~~~~L~~ 1118 (1158)
-..++..++.. .++. +++....--..+.|++
T Consensus 77 -~~~vl~~l~~~l~~~~-~ivS~~aGi~~~~l~~ 108 (277)
T PRK06928 77 -VLPLLKDCAPVLTPDR-HVVSIAAGVSLDDLLE 108 (277)
T ss_pred -HHHHHHHHHhhcCCCC-EEEEECCCCCHHHHHH
Confidence 22333334333 3343 4444444333334433
No 366
>PRK06196 oxidoreductase; Provisional
Probab=77.82 E-value=3.6 Score=47.13 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=55.0
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh--CCCCEEEccCCCHHHHHhcC------ccccCEEEEe
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGSREVLHKVG------AERACAAAIT 1080 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~--~g~~vi~GDasd~e~L~~Ag------I~~A~~VIi~ 1080 (1158)
+.++|.|. |.+|..+++.|.++|++|+++++++++.+...+ .++.++.+|.+|.+.++++- ..+.|.+|..
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~n 106 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILINN 106 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 45777776 679999999999999999999999887654432 24788899999998775431 2357777765
Q ss_pred c
Q 001096 1081 L 1081 (1158)
Q Consensus 1081 t 1081 (1158)
.
T Consensus 107 A 107 (315)
T PRK06196 107 A 107 (315)
T ss_pred C
Confidence 4
No 367
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=77.82 E-value=3 Score=53.12 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=52.5
Q ss_pred cccccccC-CcccHHHHHHHHhhC-CCCEEEEeCCchHHHHh-hhCCCCEEEccCCCHHHH-HhcCccccCEEEE
Q 001096 1009 QDHIILCG-FGRVGQIIAQLLSER-LIPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVL-HKVGAERACAAAI 1079 (1158)
Q Consensus 1009 ~~hvVIiG-~G~vG~~Ia~~L~e~-g~~VvVID~d~~~v~~l-~~~g~~vi~GDasd~e~L-~~AgI~~A~~VIi 1079 (1158)
..+++|.| .|-+|..+++.|.++ |++|+++|+++...... ...+++++.||.+|+..+ +++ ++++|+||=
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~-l~~~D~ViH 388 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH-IKKCDVVLP 388 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH-hcCCCEEEE
Confidence 34688998 599999999999985 79999999887654333 234688999999986553 432 356888773
No 368
>PRK13243 glyoxylate reductase; Reviewed
Probab=77.79 E-value=4.8 Score=47.15 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=55.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
.+.+.|+|+|.+|+.+++.|+..|.+|.+.|++++... ....|.. ..+.+.+ +.++|+|++.++....+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-----~~~l~el----l~~aDiV~l~lP~t~~T~ 219 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-----YRPLEEL----LRESDFVSLHVPLTKETY 219 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-----ecCHHHH----HhhCCEEEEeCCCChHHh
Confidence 45799999999999999999999999999998765422 2222321 1232222 457899999998765433
Q ss_pred HH--HHHHHhhCCCce
Q 001096 1089 RT--VWALSKYFPNVK 1102 (1158)
Q Consensus 1089 ~i--~l~ar~l~p~~~ 1102 (1158)
.+ ...+....|...
T Consensus 220 ~~i~~~~~~~mk~ga~ 235 (333)
T PRK13243 220 HMINEERLKLMKPTAI 235 (333)
T ss_pred hccCHHHHhcCCCCeE
Confidence 32 233444444433
No 369
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=77.68 E-value=4.5 Score=46.59 Aligned_cols=65 Identities=26% Similarity=0.195 Sum_probs=50.4
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEeCCchHH-HHhhhCCCCEEEccCCCHHHHHhcCcc-ccCEEEEe
Q 001096 1016 GFGRVGQIIAQLLSERLIPFVALDVRSDRV-AIGRALDLPVYFGDAGSREVLHKVGAE-RACAAAIT 1080 (1158)
Q Consensus 1016 G~G~vG~~Ia~~L~e~g~~VvVID~d~~~v-~~l~~~g~~vi~GDasd~e~L~~AgI~-~A~~VIi~ 1080 (1158)
|.|-+|.-.+.+|.+.|++|+|+|+-..-- +.+...-.+++.||..|.+.|++.=.+ +.++||=.
T Consensus 8 GAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHF 74 (329)
T COG1087 8 GAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHF 74 (329)
T ss_pred CcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEEC
Confidence 689999999999999999999999876633 333333379999999999999876333 56666543
No 370
>PRK09186 flagellin modification protein A; Provisional
Probab=77.57 E-value=3.9 Score=44.74 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=52.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh--------hCCCCEEEccCCCHHHHHhcC--c----ccc
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR--------ALDLPVYFGDAGSREVLHKVG--A----ERA 1074 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~--------~~g~~vi~GDasd~e~L~~Ag--I----~~A 1074 (1158)
+.++|.|. +.+|+.+++.|.++|+.|++++.+++..+... ...+.++.+|.+|++.+.++= + ...
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~i 84 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGKI 84 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCCc
Confidence 45777875 68999999999999999999999887754331 113446689999998875531 1 236
Q ss_pred CEEEEec
Q 001096 1075 CAAAITL 1081 (1158)
Q Consensus 1075 ~~VIi~t 1081 (1158)
|.+|-..
T Consensus 85 d~vi~~A 91 (256)
T PRK09186 85 DGAVNCA 91 (256)
T ss_pred cEEEECC
Confidence 7777554
No 371
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=77.46 E-value=3.2 Score=47.32 Aligned_cols=64 Identities=23% Similarity=0.123 Sum_probs=50.0
Q ss_pred CCcccHHHHHHHHhhCC--CCEEEEeCCchHHH--HhhhCCCC-EEEccCCCHHHHHhcCccccCEEEEe
Q 001096 1016 GFGRVGQIIAQLLSERL--IPFVALDVRSDRVA--IGRALDLP-VYFGDAGSREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1016 G~G~vG~~Ia~~L~e~g--~~VvVID~d~~~v~--~l~~~g~~-vi~GDasd~e~L~~AgI~~A~~VIi~ 1080 (1158)
|.|-+|+.++++|.++| +.|.++|..+.... .....+.. ++.||.+|++.+.++ ++.+++|+=+
T Consensus 5 gsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a-~~g~d~V~H~ 73 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEA-LEGVDVVFHT 73 (280)
T ss_pred CCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHH-hcCCceEEEe
Confidence 67899999999999999 78999998765432 33444444 889999999999886 4567887766
No 372
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.40 E-value=20 Score=37.12 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=54.7
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001096 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1158)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (1158)
-...+...+++........|.|+..||.|..-|+.+|+++++....++.++...+...++.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 3566788999999999999999999999999999999999999999999988888877663
No 373
>PLN00198 anthocyanidin reductase; Provisional
Probab=77.25 E-value=3.6 Score=47.48 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=51.6
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHH------hhhC-CCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAI------GRAL-DLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~------l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
..++|.| .|-+|..+++.|.+.|++|+++..+.+.... +... .+.++.||.+|++.+.++ ++++|+||-+.
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vih~A 88 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAP-IAGCDLVFHVA 88 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHH-HhcCCEEEEeC
Confidence 4577777 7789999999999999999877766543221 1111 367889999999887765 24678877555
No 374
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=77.25 E-value=1e+02 Score=36.87 Aligned_cols=117 Identities=11% Similarity=0.070 Sum_probs=78.5
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCCchHH-HHHHHHHhhcccccccccC------chhHHHHHHHHHHHHHHHHHhc-CCh
Q 001096 604 FDVLWLLLA-SVIFVPIFQKIPGGSPVL-GYLAAGILIGPYGLSIIRH------VHGTKAIAEFGVVFLLFNIGLE-LSV 674 (1158)
Q Consensus 604 l~i~lLLl~-a~ilg~Ll~Rl~glP~VV-G~ILaGILLGP~gLgli~~------~~~l~~LaeLGLi~LLF~aGLe-lDl 674 (1158)
+..+.++.. -+.++.++.++.++|.-+ .+++.=.++-. .+++++ ...-++++.=-.-.+||-.|+- +|+
T Consensus 266 ~g~G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl 343 (438)
T COG3493 266 MGAGMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKA--ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDL 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccH
Confidence 444444444 445567777775678555 44444444442 344442 2344677777777889999997 999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-hccc
Q 001096 675 ERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG-NGLA 722 (1158)
Q Consensus 675 ~~Lrr~~k~il~Lai~gvllt~iivglll~~llGls~~~AlllG-aiLs 722 (1158)
+++-........+..+.+++.++..+++..+++|+.+.++-+.+ ++.+
T Consensus 344 ~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a 392 (438)
T COG3493 344 NEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMA 392 (438)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhc
Confidence 99998877777777778888888888888888898766554443 6554
No 375
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=77.23 E-value=14 Score=41.64 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=61.3
Q ss_pred cHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCC---H-HHHH-hcCccccCEEEEecCCchhhHHHHHHH
Q 001096 1020 VGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS---R-EVLH-KVGAERACAAAITLDTPGANYRTVWAL 1094 (1158)
Q Consensus 1020 vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd---~-e~L~-~AgI~~A~~VIi~t~dd~~Nl~i~l~a 1094 (1158)
+|..++-.|.+.|++|++++++ ++.+..++.|+.+...+... + .+.. -.....+|.+++++......-.+....
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~~~~~~l~~l~ 80 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAYQTEEAAALLL 80 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccchhHHHHHHHhH
Confidence 5778888999999999999987 67777888887654322110 1 0111 112457999999998764332233333
Q ss_pred HhhCCCceEEEEecChhhHHHHHH
Q 001096 1095 SKYFPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1095 r~l~p~~~IIara~d~e~~~~L~~ 1118 (1158)
..+.++..|+.-.+-....+.+.+
T Consensus 81 ~~l~~~~~iv~~qNG~g~~~~l~~ 104 (293)
T TIGR00745 81 PLIGKNTKVLFLQNGLGHEERLRE 104 (293)
T ss_pred hhcCCCCEEEEccCCCCCHHHHHH
Confidence 344666666665565555565554
No 376
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=77.12 E-value=9.6 Score=46.21 Aligned_cols=71 Identities=23% Similarity=0.270 Sum_probs=51.2
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHH---------hcCccccCEEEEec
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLH---------KVGAERACAAAITL 1081 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~---------~AgI~~A~~VIi~t 1081 (1158)
.+-++|.|.+|..++..|.+ +++|+.+|.|+++++.+. .|...+. ++..++... ...+.++++++++.
T Consensus 8 kI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~-e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 8 KIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNL-ETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred eEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCC-CCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 47889999999999999987 699999999999999988 4443221 111111100 01257899999999
Q ss_pred CCc
Q 001096 1082 DTP 1084 (1158)
Q Consensus 1082 ~dd 1084 (1158)
+++
T Consensus 85 ptp 87 (425)
T PRK15182 85 PTP 87 (425)
T ss_pred CCC
Confidence 987
No 377
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.09 E-value=3.6 Score=45.08 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=52.0
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhC--CCCEEEccCCCHHHHHhc--Cc----cccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKV--GA----ERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~--g~~vi~GDasd~e~L~~A--gI----~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.+.|.+|++++++++..+.. ... ...++.+|.++++.++.+ .+ ...|+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~ 87 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLDY 87 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45777774 6899999999999999999999998765433 222 356788999999876543 11 24567
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|-..
T Consensus 88 li~~a 92 (253)
T PRK06172 88 AFNNA 92 (253)
T ss_pred EEECC
Confidence 66544
No 378
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=77.07 E-value=5.8 Score=47.76 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=57.0
Q ss_pred cccccccCCcccHHHHHHHHhhCC-CCEEEEeCCchHHHHhh-hCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g-~~VvVID~d~~~v~~l~-~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
..+++++|+|.+|.-+++.|.+.| ..+++..+..++...+. +.| |++...+-|.. .+..+|+||.+|+.+..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~-~l~~~DvVissTsa~~~ 251 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-----AEAVALEELLE-ALAEADVVISSTSAPHP 251 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHH-hhhhCCEEEEecCCCcc
Confidence 467999999999999999999999 57888888888887664 445 45555444433 35689999999988754
Q ss_pred hH
Q 001096 1087 NY 1088 (1158)
Q Consensus 1087 Nl 1088 (1158)
.+
T Consensus 252 ii 253 (414)
T COG0373 252 II 253 (414)
T ss_pred cc
Confidence 43
No 379
>PRK08309 short chain dehydrogenase; Provisional
Probab=76.97 E-value=4.1 Score=43.39 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=58.8
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----CCCCEEEccCCCHHHHHhcC------ccccCEEEE
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----~g~~vi~GDasd~e~L~~Ag------I~~A~~VIi 1079 (1158)
+++|.|...++..+++.|.+.|++|++++.+++..+.+.. .....+.+|.+|++.+.++= ....+.++.
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv~ 81 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAVA 81 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4788888788889999999999999999999887665432 23556678999988765431 124456665
Q ss_pred ecCCchhhHHHHHHHHhhC
Q 001096 1080 TLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1080 ~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
....+. .-.++..+++.+
T Consensus 82 ~vh~~~-~~~~~~~~~~~g 99 (177)
T PRK08309 82 WIHSSA-KDALSVVCRELD 99 (177)
T ss_pred eccccc-hhhHHHHHHHHc
Confidence 554442 233444455554
No 380
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=76.87 E-value=2.1 Score=50.51 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=43.8
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCcc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAE 1072 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~ 1072 (1158)
-.|+|+|.|..|..++-.|.++|++|+++|.++.........+...+.-.+...+.|+++|+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~ 69 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVW 69 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCch
Confidence 468999999999999999999999999999976421111111233344445556667777653
No 381
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.69 E-value=4.8 Score=43.28 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=52.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhc--Cc----cccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKV--GA----ERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~A--gI----~~A~~ 1076 (1158)
..++|.|. |.+|+.+++.|.++|+.|++++++++..+.. +..+ ..++.+|.++++.+.++ ++ ...++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 85 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALDI 85 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 35777774 8899999999999999999999998765433 2223 45666999999877543 11 24577
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|-..
T Consensus 86 vi~~a 90 (246)
T PRK05653 86 LVNNA 90 (246)
T ss_pred EEECC
Confidence 77765
No 382
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.62 E-value=3.6 Score=45.35 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=52.5
Q ss_pred cccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh----hC--CCCEEEccCCCHHHHHhc------CccccCEE
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKV------GAERACAA 1077 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~----~~--g~~vi~GDasd~e~L~~A------gI~~A~~V 1077 (1158)
.++|.|. |.+|..+++.|.+.|++|++++++++..+... .. ...++.+|.+|++.++++ .....|+|
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 82 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDIL 82 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4677776 88999999999999999999999977654332 22 356778999999877553 11256777
Q ss_pred EEec
Q 001096 1078 AITL 1081 (1158)
Q Consensus 1078 Ii~t 1081 (1158)
|-..
T Consensus 83 i~~a 86 (263)
T PRK06181 83 VNNA 86 (263)
T ss_pred EECC
Confidence 7654
No 383
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=76.59 E-value=3.5 Score=45.39 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=54.1
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhh----hC--CCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~----~~--g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.| .|.+|..+++.|.++|++|++++++.++.+... .. ....+.+|.+|++.++++= ....|.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~ 92 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVDI 92 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4677777 588999999999999999999999987655442 22 3457889999998884321 135678
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-..+
T Consensus 93 vi~~ag 98 (259)
T PRK08213 93 LVNNAG 98 (259)
T ss_pred EEECCC
Confidence 777654
No 384
>PLN02735 carbamoyl-phosphate synthase
Probab=76.46 E-value=2.1 Score=57.63 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=60.3
Q ss_pred ccccccccCCcc--cHH---------HHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCE
Q 001096 1008 LQDHIILCGFGR--VGQ---------IIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACA 1076 (1158)
Q Consensus 1008 l~~hvVIiG~G~--vG~---------~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~ 1076 (1158)
-++.++|+|.|. +|+ .+++.|++.|+++++|+.|++.+-...+.....++-+.+-+++++-+.-++.++
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~ 652 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDG 652 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 367899999987 665 366999999999999999999865444444555665666677777778889999
Q ss_pred EEEecCCchh
Q 001096 1077 AAITLDTPGA 1086 (1158)
Q Consensus 1077 VIi~t~dd~~ 1086 (1158)
|+...+.+..
T Consensus 653 Vi~~~Ggq~~ 662 (1102)
T PLN02735 653 IIVQFGGQTP 662 (1102)
T ss_pred EEECCCchHH
Confidence 8887776644
No 385
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=76.43 E-value=7 Score=50.45 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=52.1
Q ss_pred ccccccCCcccHHHHHHHHhhCC--CCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g--~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
.++.|+|.|.+|..+++.|.+.| .+|+++|.++++.+.+.+.|... -...+.+ + -++++|.|+++++...
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~--~~~~~~~---~-~~~~aDvVilavp~~~ 75 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID--RGEEDLA---E-AVSGADVIVLAVPVLA 75 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC--cccCCHH---H-HhcCCCEEEECCCHHH
Confidence 45889999999999999999988 47999999999888777766431 0112221 1 1457899999998753
No 386
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.43 E-value=3.8 Score=52.12 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=56.8
Q ss_pred ccccccccCCcccHHHHHHHHhhCCCCEEEEeCCch---------------------HHHHhhhCCCCEEEccCCC-HHH
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGS-REV 1065 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~---------------------~v~~l~~~g~~vi~GDasd-~e~ 1065 (1158)
..++++|+|.|..|...+..|...|++|+++|.++. ..+.+.+.|+.+..+-... ..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 367899999999999999999999999999998863 4456677888887764321 112
Q ss_pred HHhcCccccCEEEEecCCc
Q 001096 1066 LHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1066 L~~AgI~~A~~VIi~t~dd 1084 (1158)
+... ..+.|+|+++++..
T Consensus 389 ~~~l-~~~~DaV~latGa~ 406 (639)
T PRK12809 389 FSDL-TSEYDAVFIGVGTY 406 (639)
T ss_pred HHHH-HhcCCEEEEeCCCC
Confidence 2222 24689999998763
No 387
>PRK06138 short chain dehydrogenase; Provisional
Probab=76.41 E-value=3.5 Score=44.91 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=54.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----CCCCEEEccCCCHHHHHhc------CccccCEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----~g~~vi~GDasd~e~L~~A------gI~~A~~V 1077 (1158)
+.++|.|. |.+|..+++.|.++|..|++++++.+..+...+ ..+.++.+|.+|++.++++ ...+.|++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~v 85 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVL 85 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 35667665 789999999999999999999999876544322 1357788999999887654 12367777
Q ss_pred EEecC
Q 001096 1078 AITLD 1082 (1158)
Q Consensus 1078 Ii~t~ 1082 (1158)
|-...
T Consensus 86 i~~ag 90 (252)
T PRK06138 86 VNNAG 90 (252)
T ss_pred EECCC
Confidence 76554
No 388
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.38 E-value=16 Score=43.08 Aligned_cols=94 Identities=29% Similarity=0.362 Sum_probs=51.4
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001096 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (1158)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~~~~~ 349 (1158)
|..|..++.+-|..|...+.+|.+-+...+++-+++..=++.+++.+..+.+-|+.+ + .-++++=..-=||-+.++.
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~-~--~~~~ei~~~~~~a~~~L~~ 86 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEA-E--KQAKEIEEIKEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H--HHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666656555555555555555444444444443332222222 1 1122222222356677888
Q ss_pred HHHHHHHHHHhhcCCCC
Q 001096 350 AEIALQRAEKSLSNSSV 366 (1158)
Q Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (1158)
|+=+|..|++.+++++.
T Consensus 87 a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 87 AEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 99999999999999984
No 389
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.35 E-value=1.1e+02 Score=38.33 Aligned_cols=146 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHH-------------HHHHHHhchhHHHHHHHhhhHhHHHHHHHHh
Q 001096 150 TDELRELLMNAMKELEVAQLNSTMFEEK-----AQR-------------ISEAAIALKDEAANAWNNVNVTLDMVHEIVN 211 (1158)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~-----~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1158)
.+.|||-|+.+..+++..+-..+++-+. ++| .++..+.|.|... +|..-.+-.+-......
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l-~lke~~~q~~qEk~~l~ 363 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASL-ELKEGRSQWAQEKQALQ 363 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHH
Q 001096 212 EECIAK-EAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETE 290 (1158)
Q Consensus 212 ~e~~a~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1158)
.+.++. +-+++-..-+.+++-.+|-...--+.. +.++.+|- +.-+--+.|.+--|.+.+.-
T Consensus 364 ~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL---------------~~ql~ke~---D~n~vqlsE~~rel~Elks~ 425 (546)
T PF07888_consen 364 HSAEADKDEIEKLSRELQMLEEHLQEERMERQKL---------------EKQLGKEK---DCNRVQLSENRRELQELKSS 425 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhh---hhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 001096 291 LRRLQSKKEELQKEVDRLNEVAEK 314 (1158)
Q Consensus 291 l~~~~~~~~~~q~~~~~~~~~~~~ 314 (1158)
||-+|..|++||.|-.-|-+-.++
T Consensus 426 lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 426 LRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 390
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.33 E-value=4 Score=44.09 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=53.8
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhC-CCCEEEccCCCHHHHHhcC------ccccCEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL-DLPVYFGDAGSREVLHKVG------AERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~-g~~vi~GDasd~e~L~~Ag------I~~A~~V 1077 (1158)
+.++|.|. |.+|..+++.|.+.|++|++++++++..+.+ ... ++..+.+|.++++.++++= ....+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~i 85 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDGL 85 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 46777775 6799999999999999999999998876544 222 4677899999988775421 1235776
Q ss_pred EEecC
Q 001096 1078 AITLD 1082 (1158)
Q Consensus 1078 Ii~t~ 1082 (1158)
+....
T Consensus 86 i~~ag 90 (238)
T PRK05786 86 VVTVG 90 (238)
T ss_pred EEcCC
Confidence 66654
No 391
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.28 E-value=6.8 Score=44.89 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=69.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCC-EEEEeCCc---hHHHHhh----hC--CCCEEEccCCCHHHHHhcCccccCEEE
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRS---DRVAIGR----AL--DLPVYFGDAGSREVLHKVGAERACAAA 1078 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~-VvVID~d~---~~v~~l~----~~--g~~vi~GDasd~e~L~~AgI~~A~~VI 1078 (1158)
.++++|+|.|..|+.++..|.+.|.. |+++++++ ++.+.+. +. +..+...|.++.+.+.. .++.+|.+|
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilI 204 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILV 204 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEE
Confidence 35789999999999999999999987 99999986 5554432 22 22345567777666543 355789999
Q ss_pred EecCCch---hhHHHHHHHHhhCCCceEEEEecChhhHHHH---HHCCCCe
Q 001096 1079 ITLDTPG---ANYRTVWALSKYFPNVKTFVRAHDIDHGLNL---EKAGATA 1123 (1158)
Q Consensus 1079 i~t~dd~---~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L---~~aGAd~ 1123 (1158)
-+|+-.. .+-........+.+...++=.++++.....+ ++.|+..
T Consensus 205 NaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 205 NATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGCKT 255 (289)
T ss_pred EeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCCee
Confidence 8885221 1100000012234444445455566555555 4457643
No 392
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=76.25 E-value=62 Score=35.91 Aligned_cols=88 Identities=22% Similarity=0.101 Sum_probs=53.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHhhhccccchhhHHHHHHHHhhccchhhhHHHHHHHHHH
Q 001096 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI 971 (1158)
Q Consensus 892 ~~L~~~~~~vllllvl~ll~K~l~v~l~~~~~g~~~real~lgL~La~rG~valvla~ia~~~giIs~elfsiLvlvVVl 971 (1158)
..+..+|..++..+.+..+.-+++.+..++++|.+.. +...+.||....-+...+....|-...-...+++++-++
T Consensus 71 ~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~ 146 (215)
T PF04172_consen 71 RLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGIL 146 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhH
Confidence 3444555555555555555666777777888888642 334567898877777777777776544444444444455
Q ss_pred HHHhHHHHHhhh
Q 001096 972 SMALTPWLAAGG 983 (1158)
Q Consensus 972 S~IitPlL~~~~ 983 (1158)
..+++|++.++.
T Consensus 147 Ga~~g~~llk~~ 158 (215)
T PF04172_consen 147 GAVLGPPLLKLL 158 (215)
T ss_pred HHHhHHHHHhHc
Confidence 566677776553
No 393
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.22 E-value=8.1 Score=45.12 Aligned_cols=106 Identities=12% Similarity=-0.079 Sum_probs=62.2
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----------CCCCE--EEccCCCHHHHHhcCccccCE
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----------LDLPV--YFGDAGSREVLHKVGAERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----------~g~~v--i~GDasd~e~L~~AgI~~A~~ 1076 (1158)
+++.|+|.|.+|..++..+...|++|++.|.+++..+.+++ .|... ..+..+-...+++ .+.+||.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~-av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA-CVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH-HhcCCCE
Confidence 45889999999999999999999999999999887654322 22110 0000011112322 2468899
Q ss_pred EEEecCCchhh--HHHHHHHHhhCCCceEEEEecChhhHHHHH
Q 001096 1077 AAITLDTPGAN--YRTVWALSKYFPNVKTFVRAHDIDHGLNLE 1117 (1158)
Q Consensus 1077 VIi~t~dd~~N--l~i~l~ar~l~p~~~IIara~d~e~~~~L~ 1117 (1158)
|+-+..++..- .......+...|+. |++...+.-....+.
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la 128 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFY 128 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHH
Confidence 98888776321 11122223334443 666555544444443
No 394
>PHA02557 22 prohead core protein; Provisional
Probab=76.22 E-value=1.5e+02 Score=33.88 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001096 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1158)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~ 335 (1158)
|-+.+..|.+++.++.++-++.-+|++.++.+..-+--+..-..-+|-..--++.|+|.
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Eg 201 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEG 201 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhc
Confidence 45567888888888888888888888887777666666666666677777777777774
No 395
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=76.20 E-value=3.1 Score=52.97 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=55.4
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchH---------------------HHHhhhCCCCEEEccCCCHH-HH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR---------------------VAIGRALDLPVYFGDAGSRE-VL 1066 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~---------------------v~~l~~~g~~vi~GDasd~e-~L 1066 (1158)
.++++|+|.|..|...+..|.+.|++|+++|.++.. ++.+.+.|+.+..+.....+ ++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 468999999999999999999999999999987531 44556778888877643211 12
Q ss_pred HhcCccccCEEEEecCCc
Q 001096 1067 HKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1067 ~~AgI~~A~~VIi~t~dd 1084 (1158)
.... ..+|.|+++++..
T Consensus 273 ~~~~-~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQ-KEFDAVLLAVGAQ 289 (652)
T ss_pred HHHH-hhcCEEEEEcCCC
Confidence 2211 2489999988763
No 396
>PLN03139 formate dehydrogenase; Provisional
Probab=75.96 E-value=7.5 Score=46.57 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=57.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
...+-|+|+|++|+.+++.|...|.+|.+.|......+...+.|+.. ..+.+.+- .++|+|++..+....+.
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~----~~~l~ell----~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKF----EEDLDAML----PKCDVVVINTPLTEKTR 270 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCcee----cCCHHHHH----hhCCEEEEeCCCCHHHH
Confidence 34688999999999999999999999999998754333333334322 11333222 46899999998765544
Q ss_pred HH--HHHHHhhCCCceEE
Q 001096 1089 RT--VWALSKYFPNVKTF 1104 (1158)
Q Consensus 1089 ~i--~l~ar~l~p~~~II 1104 (1158)
.+ ...+....|...+|
T Consensus 271 ~li~~~~l~~mk~ga~lI 288 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIV 288 (386)
T ss_pred HHhCHHHHhhCCCCeEEE
Confidence 43 33444455554443
No 397
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=75.90 E-value=2.5 Score=45.12 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=55.7
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-----CCCEEEccCCCHH------------HHHhcCccc
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSRE------------VLHKVGAER 1073 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-----g~~vi~GDasd~e------------~L~~AgI~~ 1073 (1158)
++.|+|.|.+|..++-.+...|++|+++|.|++..+..++. ...+-.|..+..+ .++++- +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~--~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV--D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC--T
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh--h
Confidence 36789999999999999999999999999999987544221 0001112222111 133333 7
Q ss_pred cCEEEEecCCchhh-HHHHHHHHhhCCCceEEEEecChhhHHH
Q 001096 1074 ACAAAITLDTPGAN-YRTVWALSKYFPNVKTFVRAHDIDHGLN 1115 (1158)
Q Consensus 1074 A~~VIi~t~dd~~N-l~i~l~ar~l~p~~~IIara~d~e~~~~ 1115 (1158)
||.||=++.++..- -.+-..+.+..|.--|++...+.-....
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~ 121 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE 121 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence 89988888776322 2233344444443344554444333333
No 398
>PRK12472 hypothetical protein; Provisional
Probab=75.83 E-value=52 Score=40.30 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHH
Q 001096 214 CIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRR 293 (1158)
Q Consensus 214 ~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (1158)
.-++-.+.++..+..-|+++|..|-..|++++- | ++-. +
T Consensus 221 ~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~---------------d-----~~~~---------------------~ 259 (508)
T PRK12472 221 APLKASLRKLERAKARADAELKRADKALAAAKT---------------D-----EAKA---------------------R 259 (508)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------c-----hhhh---------------------h
Confidence 344555566666777788888888888777541 0 0111 1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 001096 294 LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIAL 354 (1158)
Q Consensus 294 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~~~~~~~~~~ 354 (1158)
.+.+|.++-.++...+..++.|..+|...+..++..-..|..|=+.--|++.-.+||+.++
T Consensus 260 a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~a~~a~l~~ 320 (508)
T PRK12472 260 AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATDAKLAL 320 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 1134555555666667777778888888888888877788887777778888888887765
No 399
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.79 E-value=2.2e+02 Score=35.67 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=17.8
Q ss_pred CCCccchhhHHHHHHHHHHhhhhhHHHH
Q 001096 504 DGTESTQASIFQGLMEYARKQLPKLVLG 531 (1158)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1158)
|| -..|+++ .-+++.+++++...+.-
T Consensus 270 dg-rihp~ri-ee~~~~~~~~~~~~i~~ 295 (514)
T TIGR03319 270 DG-RIHPARI-EEMVEKATKEVDNAIRE 295 (514)
T ss_pred cC-CCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 56 3677777 56777777777776654
No 400
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.78 E-value=73 Score=40.12 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001096 227 LSLAEARLQVAIESLQD 243 (1158)
Q Consensus 227 ~~~a~~~~~~~~~~~~~ 243 (1158)
++-+...++-+...+..
T Consensus 275 l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 275 VGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 401
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.68 E-value=4.5 Score=44.28 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=53.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhc------CccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKV------GAERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~A------gI~~A~~ 1076 (1158)
+.++|.|. +.+|+.+++.|.++|..|++++++++..+.+.+ ..+..+..|.+|++.++++ ...+.|+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~ 85 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDA 85 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCccE
Confidence 45677774 789999999999999999999998876554422 2356789999999877532 1235778
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-...
T Consensus 86 vi~~ag 91 (258)
T PRK07890 86 LVNNAF 91 (258)
T ss_pred EEECCc
Confidence 776553
No 402
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=75.64 E-value=5.8 Score=42.88 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=55.0
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh---CCCCEEEccCCCHHHHHhc------CccccCEEEE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~---~g~~vi~GDasd~e~L~~A------gI~~A~~VIi 1079 (1158)
+.++|.| .|.+|+.+++.|.++|..|++.+.++++.+.... ....++.+|.++.+.++++ ...+.|.+|-
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDILVN 86 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4677777 5889999999999999999899888877665432 2466788999999887654 1235778776
Q ss_pred ecC
Q 001096 1080 TLD 1082 (1158)
Q Consensus 1080 ~t~ 1082 (1158)
...
T Consensus 87 ~ag 89 (245)
T PRK12936 87 NAG 89 (245)
T ss_pred CCC
Confidence 654
No 403
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=75.58 E-value=4.4 Score=48.93 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=53.1
Q ss_pred cccccccCCcccHHHHHHHHhhCC-CCEEEEeCCchHHHHh-hhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g-~~VvVID~d~~~v~~l-~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
...++|+|.|.+|..+++.|...| .+|+++++++++...+ ...|...+. .+.+.+ .+.++|.||.+|+.+..
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~-----~~~l~~-~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVK-----FEDLEE-YLAEADIVISSTGAPHP 253 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEee-----HHHHHH-HHhhCCEEEECCCCCCc
Confidence 357899999999999999999999 6899999999887644 334443332 223332 24579999999987754
No 404
>PRK08643 acetoin reductase; Validated
Probab=75.53 E-value=4.3 Score=44.52 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=52.1
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhc------CccccCE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKV------GAERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~A------gI~~A~~ 1076 (1158)
+.++|.| .+.+|..+++.|.++|+.|++++++++..+.+.. .+..++.+|.++++.++++ ...+.|+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNV 82 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3566666 5679999999999999999999998876544422 2355678999999876442 1235677
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|-..
T Consensus 83 vi~~a 87 (256)
T PRK08643 83 VVNNA 87 (256)
T ss_pred EEECC
Confidence 77655
No 405
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.50 E-value=14 Score=39.32 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=54.7
Q ss_pred cccccCCcccHHHHHHHHhhCCCC-EEEEeCCc------------------hHHHH----hhhC----CCCEEEccCCCH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIP-FVALDVRS------------------DRVAI----GRAL----DLPVYFGDAGSR 1063 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~-VvVID~d~------------------~~v~~----l~~~----g~~vi~GDasd~ 1063 (1158)
+++|+|.|-+|..+++.|...|+. ++++|.|. .+.+. +++. .+..+....+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~- 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE- 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence 478999999999999999999995 99999996 12221 1221 22333344333
Q ss_pred HHHHhcCccccCEEEEecCCchhhHHHHHHHHhh
Q 001096 1064 EVLHKVGAERACAAAITLDTPGANYRTVWALSKY 1097 (1158)
Q Consensus 1064 e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l 1097 (1158)
+.+.+ -++++|.||.++++...-..+...+.+.
T Consensus 80 ~~~~~-~l~~~DlVi~~~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 80 NNLEG-LFGDCDIVVEAFDNAETKAMLAESLLGN 112 (174)
T ss_pred hhHHH-HhcCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 22222 2567899998888876554454444444
No 406
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=75.49 E-value=4.7 Score=44.57 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=52.6
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC---CCCEEEccCCCHHHHHhc------CccccCEEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~---g~~vi~GDasd~e~L~~A------gI~~A~~VIi 1079 (1158)
+.++|.|. +.+|..+++.|.+.|.+|++++++.+..+.+.+. ....+.+|.++++...++ ...+.|++|-
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~ 85 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIP 85 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45677775 5699999999999999999999998877666443 255678999998765432 1134566665
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 86 ~A 87 (262)
T TIGR03325 86 NA 87 (262)
T ss_pred CC
Confidence 53
No 407
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=75.48 E-value=20 Score=40.67 Aligned_cols=115 Identities=11% Similarity=0.032 Sum_probs=69.2
Q ss_pred cccccCCcccHHHHHHHHhhCC--CC-EEEEeCCchHHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1011 HIILCGFGRVGQIIAQLLSERL--IP-FVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g--~~-VvVID~d~~~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
++.|+|+|.+|+.+++.+.+.+ .+ +.++|.++++.+.+.+ .|..++ .+.+.+- .++|.|+.+++.+..
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~----~~~~ell----~~~DvVvi~a~~~~~ 74 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKAC----LSIDELV----EDVDLVVECASVNAV 74 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeE----CCHHHHh----cCCCEEEEcCChHHH
Confidence 4789999999999999998753 44 5578999988776644 233222 2333332 579999999876533
Q ss_pred hHHHHHHHHhhCCCceEEEEec----ChhhHHH----HHHCCCCeeecCCcHHHHHHH
Q 001096 1087 NYRTVWALSKYFPNVKTFVRAH----DIDHGLN----LEKAGATAVVPETLEPSLQLA 1136 (1158)
Q Consensus 1087 Nl~i~l~ar~l~p~~~IIara~----d~e~~~~----L~~aGAd~VI~p~~~a~~~LA 1136 (1158)
...+..+.+.+.+ +++... |.+.... .++.|..-.+++....+....
T Consensus 75 -~~~~~~al~~Gk~--Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i 129 (265)
T PRK13304 75 -EEVVPKSLENGKD--VIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGI 129 (265)
T ss_pred -HHHHHHHHHcCCC--EEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHH
Confidence 4444444455544 343322 4433333 355577666655445544333
No 408
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=75.46 E-value=43 Score=42.22 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH----h-----cCCChhhHHHHhhhccccchh
Q 001096 873 YRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGR----L-----FGVSVISAIRTGLLLAPGGEF 943 (1158)
Q Consensus 873 ~~~~flPlFFvliGm~idl~~L~~~~~~vllllvl~ll~K~l~v~l~~~----~-----~g~~~real~lgL~La~rG~v 943 (1158)
+..+++|..-.-.|..++...+..++..++.+.++.++.-.+.+....+ . .++++.+++.+|..+++-.-+
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 4556788888889999999999988765544443333333322222221 1 256899999999998888776
Q ss_pred hHH
Q 001096 944 AFV 946 (1158)
Q Consensus 944 alv 946 (1158)
+..
T Consensus 148 AVl 150 (559)
T TIGR00840 148 AVL 150 (559)
T ss_pred HHH
Confidence 654
No 409
>PRK07574 formate dehydrogenase; Provisional
Probab=75.43 E-value=9.6 Score=45.65 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=56.7
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
..+.|+|+|++|+.+++.|...|.+|...|+.....+.....|... ..+.+.+ +.++|+|++.++....+..
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~----~~~l~el----l~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY----HVSFDSL----VSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee----cCCHHHH----hhcCCEEEEcCCCCHHHHH
Confidence 4589999999999999999999999999998763333233333221 1223222 3579999999987754433
Q ss_pred H--HHHHHhhCCCceEE
Q 001096 1090 T--VWALSKYFPNVKTF 1104 (1158)
Q Consensus 1090 i--~l~ar~l~p~~~II 1104 (1158)
+ ...+....+...+|
T Consensus 265 li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 265 LFDADVLSRMKRGSYLV 281 (385)
T ss_pred HhCHHHHhcCCCCcEEE
Confidence 3 33344445554444
No 410
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=75.43 E-value=7.1 Score=42.29 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=57.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHHH-------------------------HhhhC----CCCEEEc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA-------------------------IGRAL----DLPVYFG 1058 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v~-------------------------~l~~~----g~~vi~G 1058 (1158)
+.+++|+|.|.+|..+++.|...|. +++++|.|.-... .+++. .+..+..
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~ 98 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEE 98 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 5689999999999999999999998 4999998732111 11121 1223334
Q ss_pred cCCCHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1059 Dasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
+..+.......-+.++|+||.++++......+....++.+
T Consensus 99 ~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ 138 (198)
T cd01485 99 DSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH 138 (198)
T ss_pred ccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 4431111111124578888888777666666666777765
No 411
>PRK12704 phosphodiesterase; Provisional
Probab=75.21 E-value=1.5e+02 Score=37.13 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=9.6
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHH
Q 001096 270 LLAAENDIKECQANLANCETELRRL 294 (1158)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~ 294 (1158)
|..-++++.+-+.+|..-+.+|...
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~ 129 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKK 129 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 412
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=75.21 E-value=5.2 Score=43.53 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=51.4
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhc------CccccCEE
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~A------gI~~A~~V 1077 (1158)
.++|.| .|.+|..+++.|.++|++|++++++++..+.+.+ ..+.++.+|.+|++.+..+ .....|.|
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 82 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDIL 82 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 466777 5889999999999999999999999876654432 2466788999999844321 12346776
Q ss_pred EEec
Q 001096 1078 AITL 1081 (1158)
Q Consensus 1078 Ii~t 1081 (1158)
|...
T Consensus 83 i~~a 86 (255)
T TIGR01963 83 VNNA 86 (255)
T ss_pred EECC
Confidence 6544
No 413
>PRK05717 oxidoreductase; Validated
Probab=75.19 E-value=5.7 Score=43.68 Aligned_cols=72 Identities=18% Similarity=0.042 Sum_probs=51.8
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh-hC--CCCEEEccCCCHHHHHhc------CccccCEEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-AL--DLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~-~~--g~~vi~GDasd~e~L~~A------gI~~A~~VIi 1079 (1158)
+.++|.|. |.+|+.+++.|.++|.+|++++.+++..+... +. ...++.+|.++++.++++ ...+.|.+|-
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~ 90 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDALVC 90 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45777775 78999999999999999999998876654432 22 356788999998766432 1124677765
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 91 ~a 92 (255)
T PRK05717 91 NA 92 (255)
T ss_pred CC
Confidence 44
No 414
>PLN02858 fructose-bisphosphate aldolase
Probab=75.11 E-value=14 Score=51.22 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=74.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl 1088 (1158)
...+-++|.|.+|..+++.|...|++|++.|.++++.+.+.+.|... ..++..+ ++++|.|+++..|+..--
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s~~e~----~~~aDvVi~~V~~~~~v~ 395 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLA----GNSPAEV----AKDVDVLVIMVANEVQAE 395 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEEEEecCChHHHH
Confidence 35588899999999999999999999999999999998888776533 2344433 347899999999885433
Q ss_pred HHHH----HHHhhCCCceEEEEec--ChhhH----HHHHH--CCCCeeecC
Q 001096 1089 RTVW----ALSKYFPNVKTFVRAH--DIDHG----LNLEK--AGATAVVPE 1127 (1158)
Q Consensus 1089 ~i~l----~ar~l~p~~~IIara~--d~e~~----~~L~~--aGAd~VI~p 1127 (1158)
.+.. .+....+. ++++-.. +++.. ..+.+ .|+..+-.|
T Consensus 396 ~Vl~g~~g~~~~l~~g-~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 396 NVLFGDLGAVSALPAG-ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred HHHhchhhHHhcCCCC-CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 3321 22233333 4444433 34443 34455 677766555
No 415
>PRK05875 short chain dehydrogenase; Provisional
Probab=75.08 E-value=4.3 Score=45.14 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=53.9
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh--------CCCCEEEccCCCHHHHHhcC------cccc
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKVG------AERA 1074 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~--------~g~~vi~GDasd~e~L~~Ag------I~~A 1074 (1158)
+.++|.|. |.+|..+++.|.++|++|++++++++..+...+ ....++.+|.+|++.+.++= ....
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 87 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGRL 87 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56888886 799999999999999999999998776543321 13567789999988765431 1256
Q ss_pred CEEEEecC
Q 001096 1075 CAAAITLD 1082 (1158)
Q Consensus 1075 ~~VIi~t~ 1082 (1158)
|++|-...
T Consensus 88 d~li~~ag 95 (276)
T PRK05875 88 HGVVHCAG 95 (276)
T ss_pred CEEEECCC
Confidence 78776553
No 416
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=75.02 E-value=26 Score=40.96 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001096 194 NAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1158)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1158)
..+......++..+....+-.+.++...++...+.-|+++++.+.+.+..
T Consensus 128 ~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~ 177 (346)
T PRK10476 128 ANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQA 177 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666777777777777777777666666554444
No 417
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=74.89 E-value=2.6 Score=49.34 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=45.6
Q ss_pred ccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCcc
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAE 1072 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~ 1072 (1158)
++-.++|+|.|..|..++-.|.+.|++|+++|+++.........+...+.-.+...+.|++.|+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~ 68 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVW 68 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCch
Confidence 34579999999999999999999999999999987643211111122233344556777777764
No 418
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.79 E-value=4.3 Score=44.10 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=55.1
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh------CCCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~------~g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.| .|.+|..+++.|.+.|+.|++++.+.+....+.+ ..+.++.+|.++++.++++- ....|+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~ 83 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDV 83 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3467777 5789999999999999999999999877654422 24677899999998876641 135687
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|....
T Consensus 84 vi~~ag 89 (250)
T TIGR03206 84 LVNNAG 89 (250)
T ss_pred EEECCC
Confidence 777764
No 419
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=74.77 E-value=4.5 Score=44.62 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=51.8
Q ss_pred cccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh----hC-CCCEEEccCCCHHHHHhc------CccccCEEE
Q 001096 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL-DLPVYFGDAGSREVLHKV------GAERACAAA 1078 (1158)
Q Consensus 1011 hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~----~~-g~~vi~GDasd~e~L~~A------gI~~A~~VI 1078 (1158)
+++|.|. +.+|+.+++.|.++|+.|++++++++..+... +. ....+.+|.+|++.++++ .....|.+|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li 81 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV 81 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3667764 66999999999999999999999987664432 22 466788999998876543 123567776
Q ss_pred Eec
Q 001096 1079 ITL 1081 (1158)
Q Consensus 1079 i~t 1081 (1158)
-..
T Consensus 82 ~na 84 (259)
T PRK08340 82 WNA 84 (259)
T ss_pred ECC
Confidence 543
No 420
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=74.74 E-value=3.9 Score=45.93 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=53.0
Q ss_pred ccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1012 vVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
++|.| .|-+|..+++.|.+.|++|+.+|+......... .+...+.+|.++.+...++--..-++|+-+.
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-cccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 78888 499999999999999999999998877765555 6788999999998666654322115555443
No 421
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=74.69 E-value=8.4 Score=45.20 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=49.8
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchH-HHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchh
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~-v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~ 1086 (1158)
..+.|+|+|.+|..++..|+..|++|++.+.+..+ .+.+.+.|+.+ .+.+.+ +++||.|++++++...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~ea----a~~ADVVvLaVPd~~~ 86 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEV-----LTVAEA----AKWADVIMILLPDEVQ 86 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCee-----CCHHHH----HhcCCEEEEcCCHHHH
Confidence 34889999999999999999999999988776443 34455567643 122211 4468999999998754
No 422
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=74.55 E-value=5.4 Score=43.46 Aligned_cols=72 Identities=17% Similarity=0.042 Sum_probs=51.9
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCch--HHHHhhhC--CCCEEEccCCCHHHHHhc------CccccCEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRAL--DLPVYFGDAGSREVLHKV------GAERACAAA 1078 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~--~v~~l~~~--g~~vi~GDasd~e~L~~A------gI~~A~~VI 1078 (1158)
+.++|.|. +.+|..+++.|.++|+.|+++++++. ..+..++. .+.++.+|.++++.+.++ ...+.|++|
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li 85 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDILV 85 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45777776 68999999999999999999998752 22333333 356888999999887532 123577877
Q ss_pred Eec
Q 001096 1079 ITL 1081 (1158)
Q Consensus 1079 i~t 1081 (1158)
-..
T Consensus 86 ~~a 88 (248)
T TIGR01832 86 NNA 88 (248)
T ss_pred ECC
Confidence 654
No 423
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.46 E-value=4.9 Score=43.68 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=52.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-CC--CCEEEccCCCHHHHHhc------CccccCEEEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LD--LPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-~g--~~vi~GDasd~e~L~~A------gI~~A~~VIi 1079 (1158)
+.++|.|. |.+|+.+++.|.++|+.|++++++++..+...+ .+ ...+.+|.+|++....+ ...+.|++|-
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVFI 86 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 46777775 889999999999999999999998876654432 23 45678999998765432 1135677765
Q ss_pred ec
Q 001096 1080 TL 1081 (1158)
Q Consensus 1080 ~t 1081 (1158)
..
T Consensus 87 ~a 88 (249)
T PRK06500 87 NA 88 (249)
T ss_pred CC
Confidence 44
No 424
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.45 E-value=5.5 Score=44.02 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=50.8
Q ss_pred ccccccCCc---ccHHHHHHHHhhCCCCEEEEeCCchHHHHhh---hCCCCEEEccCCCHHHHHhc------CccccCEE
Q 001096 1010 DHIILCGFG---RVGQIIAQLLSERLIPFVALDVRSDRVAIGR---ALDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~G---~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~---~~g~~vi~GDasd~e~L~~A------gI~~A~~V 1077 (1158)
+.++|.|.+ .+|+.+++.|.+.|.+|++.+++....+.+. .....++..|.+|++..+++ ...+.|++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~l 87 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKIDGI 87 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 468888875 7999999999999999999988743222222 23456788999998876542 12356777
Q ss_pred EEe
Q 001096 1078 AIT 1080 (1158)
Q Consensus 1078 Ii~ 1080 (1158)
|..
T Consensus 88 v~n 90 (252)
T PRK06079 88 VHA 90 (252)
T ss_pred EEc
Confidence 653
No 425
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=74.31 E-value=40 Score=34.94 Aligned_cols=102 Identities=14% Similarity=0.223 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHhhcccccccccCchhH-----HHHHHHHHHHHHHHHHhcC
Q 001096 601 ASLFDVLWLLLASVIFVPIFQKIPGGS---PVLGYLAAGILIGPYGLSIIRHVHGT-----KAIAEFGVVFLLFNIGLEL 672 (1158)
Q Consensus 601 ~~Ll~i~lLLl~a~ilg~Ll~Rl~glP---~VVG~ILaGILLGP~gLgli~~~~~l-----~~LaeLGLi~LLF~aGLel 672 (1158)
+.+.++++++.+.. +|.+..++.++| +++|+++.=+++. ++.+. .+++ -.+.++++.|+=--+|+=.
T Consensus 8 ~~l~ql~ill~~~~-lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk-~~~v~~~a~~LL~~m~LfFVPagVGim~ 82 (141)
T PRK04125 8 SFLHQAFIFAAIML-ISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVK-LEQVESLGTALTNNIGFLFVPSGISVIN 82 (141)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcC-HHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 33455555555444 444555433555 5677766433332 22222 1222 2445555555555577777
Q ss_pred ChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001096 673 SVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS 707 (1158)
Q Consensus 673 Dl~~Lrr~~k~il~Lai~gvllt~iivglll~~ll 707 (1158)
.++.++..+.+++...+++++++.+++|+...++.
T Consensus 83 ~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~ 117 (141)
T PRK04125 83 SLGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL 117 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888887777777777777766666665543
No 426
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=74.25 E-value=79 Score=38.48 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=43.3
Q ss_pred cccccccCCcccHHHHHHHHhh---CCCCE-EEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSE---RLIPF-VALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e---~g~~V-vVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
..+++|+|.|..|..+++.+++ .|+.+ -.+|.|++.... .-.|.+++ |+ .+.. +.+.-.+++.|+++.++.
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~-~i~g~pVl-g~-~~l~--~~i~~~~id~ViIAip~~ 199 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASGR-LLTGLPVV-GA-DDAL--RLYARTRYAYVIVAMPGT 199 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCcccccc-ccCCCccc-Ch-hHHH--HHHHhCCCCEEEEecCCc
Confidence 3569999999999999999974 34544 456766543221 12456654 54 3322 222223567788888754
No 427
>PRK12320 hypothetical protein; Provisional
Probab=74.08 E-value=8.9 Score=49.27 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=52.6
Q ss_pred cccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
+++|.| .|-+|+.+++.|.+.|++|+++|+++... ...++.++.||.+++. +.++ +.++|.||-+..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~a-l~~~D~VIHLAa 69 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQEL-AGEADAVIHLAP 69 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHH-hcCCCEEEEcCc
Confidence 377888 69999999999999999999999876532 2346889999999986 4443 346888887765
No 428
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.99 E-value=17 Score=40.72 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=59.5
Q ss_pred cccccCCcccHHHHHHHHhhCCCC---EEEEeCCchHHHHhhhC--CCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIP---FVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~---VvVID~d~~~v~~l~~~--g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
++-|+|.|.+|..+++.|.+.|++ +.+.++++++.+.+.+. +..+ . .+...+ ++++|.|++++.++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~---~~~~~~----~~~aDvVilav~p~- 72 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRI-A---KDNQAV----VDRSDVVFLAVRPQ- 72 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceE-e---CCHHHH----HHhCCEEEEEeCHH-
Confidence 367899999999999999988754 57888888888776553 2222 2 122222 23689999999854
Q ss_pred hhHHHHHHHHhhCCCceEEEEecChhhHHHHHH
Q 001096 1086 ANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~ 1118 (1158)
....+...++ ..++ ++++..--.-..+.+++
T Consensus 73 ~~~~vl~~l~-~~~~-~~vis~~ag~~~~~l~~ 103 (258)
T PRK06476 73 IAEEVLRALR-FRPG-QTVISVIAATDRAALLE 103 (258)
T ss_pred HHHHHHHHhc-cCCC-CEEEEECCCCCHHHHHH
Confidence 2223322222 3343 45544555555555543
No 429
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=73.96 E-value=13 Score=43.25 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=61.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeC---CchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDV---RSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~---d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
.+.++|.|.|.+|...+..++..|..|++++. ++++.+.+++.|...+ |..+.+..+......+|.++-+++.+.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g~~~ 250 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATGVPP 250 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcCCHH
Confidence 35689999999999999999999999999997 6788888888887765 332222111111246899988888653
Q ss_pred hhHHHHHHHHhhCCCceEEE
Q 001096 1086 ANYRTVWALSKYFPNVKTFV 1105 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l~p~~~IIa 1105 (1158)
.+...++.+.++-+++.
T Consensus 251 ---~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 251 ---LAFEALPALAPNGVVIL 267 (355)
T ss_pred ---HHHHHHHHccCCcEEEE
Confidence 22333444445445443
No 430
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.88 E-value=2.9 Score=53.29 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=52.9
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCch---------------------HHHHhhhCCCCEEEccC----CCH
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDA----GSR 1063 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~---------------------~v~~l~~~g~~vi~GDa----sd~ 1063 (1158)
.++++|+|.|..|...+..|.+.|++|+++|.++. ..+.+++.|+.+..+.. .+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~ 406 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISL 406 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCH
Confidence 56899999999999999999999999999998753 23445667877765432 122
Q ss_pred HHHHhcCccccCEEEEecCC
Q 001096 1064 EVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1064 e~L~~AgI~~A~~VIi~t~d 1083 (1158)
+.+. .++|+|+++++.
T Consensus 407 ~~~~----~~~DavilAtGa 422 (654)
T PRK12769 407 ESLL----EDYDAVFVGVGT 422 (654)
T ss_pred HHHH----hcCCEEEEeCCC
Confidence 2222 368999998875
No 431
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.67 E-value=13 Score=43.22 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=73.1
Q ss_pred cccccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-CCCEEEccCCCHHHHHhcCccccCEEEEec---C
Q 001096 1007 DLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITL---D 1082 (1158)
Q Consensus 1007 ~l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-g~~vi~GDasd~e~L~~AgI~~A~~VIi~t---~ 1082 (1158)
-.+.+++|+|+|-+|.+.++...-.|-+|+++|.|.++.+.+.+. +.+ +.=--+++..++++ +.+||.+|-+. +
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~r-v~~~~st~~~iee~-v~~aDlvIgaVLIpg 243 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGR-VHTLYSTPSNIEEA-VKKADLVIGAVLIPG 243 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCce-eEEEEcCHHHHHHH-hhhccEEEEEEEecC
Confidence 346789999999999999999999999999999999998877654 222 23334566666554 56788877554 3
Q ss_pred CchhhHHHHHHHHhhCCCceEEEEecC
Q 001096 1083 TPGANYRTVWALSKYFPNVKTFVRAHD 1109 (1158)
Q Consensus 1083 dd~~Nl~i~l~ar~l~p~~~IIara~d 1109 (1158)
...-.+..-..++...|...||=.+-|
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVAiD 270 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVAID 270 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEEEc
Confidence 344555566668888887666544444
No 432
>PRK08013 oxidoreductase; Provisional
Probab=73.67 E-value=2.9 Score=49.62 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=44.6
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHh-hhCCCCEEEccCCCHHHHHhcCcc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAE 1072 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l-~~~g~~vi~GDasd~e~L~~AgI~ 1072 (1158)
..|+|+|.|..|..++-.|.+.|++|+++|.++...... ...+.....-.+...+.|+++|+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~ 67 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCc
Confidence 368999999999999999999999999999987632111 011223333345566778887764
No 433
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.63 E-value=4.7 Score=44.97 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=53.4
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhc------CccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKV------GAERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~A------gI~~A~~ 1076 (1158)
+.++|.|. +.+|+.+++.|.++|++|++++++++..+.+ .+.+ ...+.+|.++++.+..+ ...+.|+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~ 90 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCDI 90 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45777775 7899999999999999999999987765433 2223 45778999998876543 1236778
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-..+
T Consensus 91 li~~ag 96 (278)
T PRK08277 91 LINGAG 96 (278)
T ss_pred EEECCC
Confidence 776543
No 434
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=73.56 E-value=12 Score=42.45 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=76.0
Q ss_pred cccccC-CcccHHHHHHHHhh-CCCCEE-EEe-CCchHHH-Hhhh------CCCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1011 HIILCG-FGRVGQIIAQLLSE-RLIPFV-ALD-VRSDRVA-IGRA------LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1011 hvVIiG-~G~vG~~Ia~~L~e-~g~~Vv-VID-~d~~~v~-~l~~------~g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
++.|+| +|++|+.+++.+.+ .+.+++ ++| .+++... .+.+ .|+++ + .|.+.+ ...+|+||.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~-~---~d~~~l----~~~~DvVId 74 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV-T---DDLEAV----ETDPDVLID 74 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCcee-e---CCHHHh----cCCCCEEEE
Confidence 478999 69999999999975 455544 466 3333321 1111 12221 1 233333 246899888
Q ss_pred ecCCchhhHHHHHHHHhhCCCceEEEE--ecChhhHHHH----HHCCCCeeecCCcHHHHHHHHHHHHhhhhhh
Q 001096 1080 TLDTPGANYRTVWALSKYFPNVKTFVR--AHDIDHGLNL----EKAGATAVVPETLEPSLQLAAAVLAQVIHDY 1147 (1158)
Q Consensus 1080 ~t~dd~~Nl~i~l~ar~l~p~~~IIar--a~d~e~~~~L----~~aGAd~VI~p~~~a~~~LA~~vl~~~i~~~ 1147 (1158)
++..+ .-...+..+.+.+. .+++- ..+.+..+.+ ++.|+.-++.|+...|-.+...++......+
T Consensus 75 fT~p~-~~~~~~~~al~~g~--~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l 145 (266)
T TIGR00036 75 FTTPE-GVLNHLKFALEHGV--RLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYL 145 (266)
T ss_pred CCChH-HHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhc
Confidence 88444 33444555555543 44432 3455555555 4456788888999999988888877765433
No 435
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=73.54 E-value=1.2e+02 Score=37.56 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=31.4
Q ss_pred cccccccCCcccHHHHHHHHhhC---CCC-EEEEeCCchHHHHhhhCCCCEE
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSER---LIP-FVALDVRSDRVAIGRALDLPVY 1056 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~---g~~-VvVID~d~~~v~~l~~~g~~vi 1056 (1158)
+.+++|+|.|..|+.+++.+.+. |+. +-.+|.|+.. . .-.|++++
T Consensus 146 ~rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~-~--~i~gvPVl 194 (476)
T PRK15204 146 KKKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTDASD-A--EINMLPVI 194 (476)
T ss_pred CCeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCCccc-c--ccCCCccc
Confidence 35699999999999999999765 554 4566765443 1 12466654
No 436
>PRK08251 short chain dehydrogenase; Provisional
Probab=73.51 E-value=5.8 Score=43.22 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=53.1
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh--------CCCCEEEccCCCHHHHHhc------Ccccc
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKV------GAERA 1074 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~--------~g~~vi~GDasd~e~L~~A------gI~~A 1074 (1158)
+.++|.| .|.+|+.+++.|.+.|..|++++++++..+.... ....++.+|.++++.+.++ ...+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 82 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGL 82 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3467776 6779999999999999999999999877654421 1356778999999876432 22356
Q ss_pred CEEEEec
Q 001096 1075 CAAAITL 1081 (1158)
Q Consensus 1075 ~~VIi~t 1081 (1158)
|++|...
T Consensus 83 d~vi~~a 89 (248)
T PRK08251 83 DRVIVNA 89 (248)
T ss_pred CEEEECC
Confidence 7777655
No 437
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.49 E-value=1.7e+02 Score=33.15 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=49.3
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001096 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1158)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~ 335 (1158)
..+.+=+-|+-..+....+.+.||.++..+.++|+++..-|++.-.+-+-+..-+++.+-+-+.-++|
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777888888999999999999999999988888777766665555555444444333
No 438
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=73.38 E-value=12 Score=39.40 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=51.6
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEE-EEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFV-ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~Vv-VID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
+++|+|.|..|+.+++.|++.|++++ .+|.+++..... -.|++++ |+ .+.|.+.. .+.+.+++++++...-..
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~-i~g~pvl-g~---~~~l~~~~-~~~~~~iiai~~~~~~~~ 74 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTS-VDGLPVL-GG---DEDLLRYP-PDEVDLVVAIGDNKLRRR 74 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcc-cCCccEE-CC---HHHHhhhc-ccccEEEEEcCCHHHHHH
Confidence 47899999999999999999999877 777776543211 2477764 42 33444432 345777777765443334
Q ss_pred HHHHHHhh
Q 001096 1090 TVWALSKY 1097 (1158)
Q Consensus 1090 i~l~ar~l 1097 (1158)
+...+.+.
T Consensus 75 i~~~l~~~ 82 (201)
T TIGR03570 75 LFEKLKAK 82 (201)
T ss_pred HHHHHHhC
Confidence 44444443
No 439
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=73.38 E-value=5.4 Score=45.60 Aligned_cols=71 Identities=17% Similarity=0.017 Sum_probs=52.0
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHH---Hhh-----hCCCCEEEccCCCHHHHHhcCccccCEEEEe
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA---IGR-----ALDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~---~l~-----~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~ 1080 (1158)
+.++|.| .|-+|..+++.|.++|++|+++.++....+ ... ..++.++.||.++++.+.++- +++|+||-+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~d~vih~ 84 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAI-EGCDAVFHT 84 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHH-hCCCEEEEe
Confidence 3577777 589999999999999999997766654322 221 124678899999999887652 357777655
Q ss_pred c
Q 001096 1081 L 1081 (1158)
Q Consensus 1081 t 1081 (1158)
.
T Consensus 85 A 85 (322)
T PLN02986 85 A 85 (322)
T ss_pred C
Confidence 5
No 440
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=73.36 E-value=3.7 Score=50.17 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=54.9
Q ss_pred ccccccccCCcccHHHHHHHHhhCCCCEEEEeCCch---------------------HHHHhhhCCCCEEEccCCCHH-H
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-V 1065 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~---------------------~v~~l~~~g~~vi~GDasd~e-~ 1065 (1158)
...+++|+|.|..|...+..|.+.|++|+++|..+. ..+.+.+.|+.++.+.....+ .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~ 221 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDIT 221 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCC
Confidence 346899999999999999999999999999997642 234456778888776554211 1
Q ss_pred HHhcCccccCEEEEecCCc
Q 001096 1066 LHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1066 L~~AgI~~A~~VIi~t~dd 1084 (1158)
.... ..+++.|+++++..
T Consensus 222 ~~~~-~~~~d~vvlAtGa~ 239 (471)
T PRK12810 222 AEEL-LAEYDAVFLGTGAY 239 (471)
T ss_pred HHHH-HhhCCEEEEecCCC
Confidence 1111 13689999998764
No 441
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.23 E-value=6 Score=45.92 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=52.6
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHH----hh-hCCCCEEEccCCCHHHHHhcCcc-ccCEEEEecC
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAI----GR-ALDLPVYFGDAGSREVLHKVGAE-RACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~----l~-~~g~~vi~GDasd~e~L~~AgI~-~A~~VIi~t~ 1082 (1158)
..++|.|. |-+|..+++.|.+.|++|+++++++..... +. ...+..+.+|.++++.+.++=-+ +.|.||-+..
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~A~ 84 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHLAA 84 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEECCc
Confidence 35788885 889999999999999999999987664321 11 12466789999999988664221 3577765553
No 442
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=73.17 E-value=18 Score=45.19 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=48.8
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
.+.+.|+|+|++|+.+++.|+..|.+|++.|+.... +...+.|+... +.+.+ +.++|.|++.++....+
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-----~l~el----l~~aDiV~l~lP~t~~t 208 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-----SLDEL----LARADFITLHTPLTPET 208 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-----cHHHH----HhhCCEEEEccCCChHh
Confidence 345889999999999999999999999999985432 22334454332 22222 34689999988876443
No 443
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=73.09 E-value=6.2 Score=53.20 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=73.1
Q ss_pred cccccccCCccc-----------HHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhc-CccccCE
Q 001096 1009 QDHIILCGFGRV-----------GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV-GAERACA 1076 (1158)
Q Consensus 1009 ~~hvVIiG~G~v-----------G~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~A-gI~~A~~ 1076 (1158)
.+.++|+|.|.. |..+++.|++.|++|+++|.++..+......... ++-++.+.+.+.+. .-++.|+
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~-~y~ep~~~e~l~~ii~~e~~D~ 85 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADT-VYFEPLTVEFVKRIIAREKPDA 85 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCe-eEECCCCHHHHHHHHHHhCcCE
Confidence 456899999986 7799999999999999999999765432222223 34467777777663 5567889
Q ss_pred EEEecCCc-hhhHHHHHH----HHhh-----CCCceEEEEecChh-hHHHHHHCCCCe
Q 001096 1077 AAITLDTP-GANYRTVWA----LSKY-----FPNVKTFVRAHDID-HGLNLEKAGATA 1123 (1158)
Q Consensus 1077 VIi~t~dd-~~Nl~i~l~----ar~l-----~p~~~IIara~d~e-~~~~L~~aGAd~ 1123 (1158)
++.+++.+ ..|....+. +.+. .|+...+..+.|.. ..+.+++.|+..
T Consensus 86 Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpv 143 (1068)
T PRK12815 86 LLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPV 143 (1068)
T ss_pred EEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 88776543 333332211 2222 24444555556654 455677788763
No 444
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=73.06 E-value=4.9 Score=53.38 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=56.0
Q ss_pred ccccccccCCcccHHHHHHHHhhCCCCEEEEeCCc---------------------hHHHHhhhCCCCEEEccCCCH-HH
Q 001096 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS---------------------DRVAIGRALDLPVYFGDAGSR-EV 1065 (1158)
Q Consensus 1008 l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~---------------------~~v~~l~~~g~~vi~GDasd~-e~ 1065 (1158)
..+.|+|+|.|+-|...|..|.+.|++|+++|.++ ..++.++..|+.+..+-.... -+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit 384 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTAT 384 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEe
Confidence 36789999999999999999999999999999863 123455667887666533221 13
Q ss_pred HHhcCccccCEEEEecCC
Q 001096 1066 LHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1066 L~~AgI~~A~~VIi~t~d 1083 (1158)
+....-.+.|+|+++++.
T Consensus 385 ~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 385 LEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHHhccccCCEEEEeCCC
Confidence 333333468999999976
No 445
>PLN00203 glutamyl-tRNA reductase
Probab=73.04 E-value=4.2 Score=50.42 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=54.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHHHHhhhC--CCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v~~l~~~--g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
...++|+|.|.+|+.+++.|...|. ++++++++.++.+.+.+. +..+..-+..+ +.+ .+.++|.||.+|+.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d---l~~-al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE---MLA-CAAEADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh---HHH-HHhcCCEEEEccCCCC
Confidence 3569999999999999999999996 699999999998877543 33332222222 222 2468999999987764
Q ss_pred h
Q 001096 1086 A 1086 (1158)
Q Consensus 1086 ~ 1086 (1158)
.
T Consensus 342 p 342 (519)
T PLN00203 342 P 342 (519)
T ss_pred C
Confidence 3
No 446
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=72.92 E-value=5.6 Score=45.23 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=50.9
Q ss_pred cccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC-------CCCEEEccCCCHHHHHhcC
Q 001096 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-------DLPVYFGDAGSREVLHKVG 1070 (1158)
Q Consensus 1009 ~~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~-------g~~vi~GDasd~e~L~~Ag 1070 (1158)
.+.++|.|. +.+|+.+++.|.++|++++++-++.++.+.+.++ .+.++.-|.++++.+.+.-
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHH
Confidence 457888885 5699999999999999999999999988766432 2467889999998887654
No 447
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=72.89 E-value=7.8 Score=45.04 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=55.5
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
..+.|+|+|.+|+.+++.|...|.+|.++|...+... +.....+ ...|+++ +.++|+|++..+....+..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-----~~~~~~~----~~~l~e~-l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-----GVQSFAG----REELSAF-LSQTRVLINLLPNTPETVG 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-----Cceeecc----cccHHHH-HhcCCEEEECCCCCHHHHH
Confidence 4688999999999999999999999999997654321 2222211 1223222 3478999999988766554
Q ss_pred HH--HHHHhhCCCceE
Q 001096 1090 TV--WALSKYFPNVKT 1103 (1158)
Q Consensus 1090 i~--l~ar~l~p~~~I 1103 (1158)
+. ..+....|+..+
T Consensus 207 li~~~~l~~mk~ga~l 222 (312)
T PRK15469 207 IINQQLLEQLPDGAYL 222 (312)
T ss_pred HhHHHHHhcCCCCcEE
Confidence 43 345555555443
No 448
>PLN02253 xanthoxin dehydrogenase
Probab=72.87 E-value=5.9 Score=44.21 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=52.7
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----CCCCEEEccCCCHHHHHhcCc------cccCEE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVGA------ERACAA 1077 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----~g~~vi~GDasd~e~L~~AgI------~~A~~V 1077 (1158)
+.++|.|. +.+|..+++.|.++|+.|++++.+++..+...+ .++.++.+|.+|++.++++=- .+.|++
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~l 98 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIM 98 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCCEE
Confidence 34677764 679999999999999999999988766543322 246788999999988765411 256777
Q ss_pred EEec
Q 001096 1078 AITL 1081 (1158)
Q Consensus 1078 Ii~t 1081 (1158)
|-..
T Consensus 99 i~~A 102 (280)
T PLN02253 99 VNNA 102 (280)
T ss_pred EECC
Confidence 6544
No 449
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.85 E-value=5.3 Score=43.32 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=53.2
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhC--CCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~--g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. |.+|..+++.|.++|+.|++++++++..+.. ... .+.++.+|.++++.++++= ....|+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 87 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDI 87 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccE
Confidence 45777774 5799999999999999999999987754432 222 3566789999998875541 136788
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|...
T Consensus 88 vi~~a 92 (239)
T PRK07666 88 LINNA 92 (239)
T ss_pred EEEcC
Confidence 77655
No 450
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=72.84 E-value=10 Score=46.87 Aligned_cols=74 Identities=14% Similarity=-0.021 Sum_probs=50.1
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhC------CCCEE-------EccCCCHHHHHhcCccccCEE
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL------DLPVY-------FGDAGSREVLHKVGAERACAA 1077 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~------g~~vi-------~GDasd~e~L~~AgI~~A~~V 1077 (1158)
++-++|.|.+|..++..|...|++|++.|.+++..+.+.+. ...-+ .|...-...+.++ +++||.|
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea-~~~aD~V 84 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEA-VAGADWI 84 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHH-hcCCCEE
Confidence 47889999999999999999999999999999987654210 00000 0111111123222 4689999
Q ss_pred EEecCCch
Q 001096 1078 AITLDTPG 1085 (1158)
Q Consensus 1078 Ii~t~dd~ 1085 (1158)
+.++.++.
T Consensus 85 ieavpe~~ 92 (495)
T PRK07531 85 QESVPERL 92 (495)
T ss_pred EEcCcCCH
Confidence 99998884
No 451
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.83 E-value=8.1 Score=47.56 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=48.2
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCch--HHHHhhhC--CCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~--~v~~l~~~--g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
+++.++|.|..|..+++.|...|++|.+.|.+.. ..+.+... |..+..|+.. ++.+ +++|.||+...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~-~~~~-----~~~d~vv~sp~ 78 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFD-PALL-----DGVDLVALSPG 78 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCc-hhHh-----cCCCEEEECCC
Confidence 4689999999999999999999999999997653 23445555 4555555433 4444 35777777643
No 452
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=72.82 E-value=1.2e+02 Score=37.40 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=54.7
Q ss_pred cccccccCCcccHHHHHHHHhhC---CCC-EEEEeCCchHHHHhhhCCCCE-EEccCCCHHHHHhcCccccCEEEEecCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSER---LIP-FVALDVRSDRVAIGRALDLPV-YFGDAGSREVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~---g~~-VvVID~d~~~v~~l~~~g~~v-i~GDasd~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
..+++|+|.|..|..+++.|.++ |+. +-.+|.|+. .|.++ +.|+..+...+- .-.+++.|+++.+.
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~-------~g~~VpvlG~~~dL~~~v--~~~~IdeViIAip~ 213 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKP-------GGVSNDWAGNLQQLVEDA--KAGKIHNVYIAMSM 213 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCcc-------ccCCCCcCCCHHHHHHHH--HhCCCCEEEEeCCC
Confidence 45699999999999999999764 444 445676541 12322 356544433222 22468888888876
Q ss_pred chhh--HHHHHHHHhhCCCceEEEEec
Q 001096 1084 PGAN--YRTVWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1084 d~~N--l~i~l~ar~l~p~~~IIara~ 1108 (1158)
.+.. -.+...+++...+++++-...
T Consensus 214 ~~~~~l~ell~~~~~~~v~V~ivP~l~ 240 (463)
T PRK10124 214 CDGARVKKLVRQLADTTCSVLLIPDVF 240 (463)
T ss_pred cchHHHHHHHHHHHHcCCeEEEecchh
Confidence 6432 234445666655555554443
No 453
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=72.78 E-value=79 Score=36.62 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=43.3
Q ss_pred HhhhhhHHHHH-HHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001096 167 AQLNSTMFEEK-AQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVK 245 (1158)
Q Consensus 167 a~~~~~~~e~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1158)
.++|=|.|+.| ||+|++. +-|+-..--|.+| |--+++.+.-|.-.+.-||+|.+-|.-.|-+-|
T Consensus 142 ~~v~V~aF~p~eaq~Iaqa---ilkqse~lIN~Ls------------~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr 206 (372)
T COG3524 142 STVNVTAFDPKEAQKIAQA---ILKQSEKLINQLS------------ERARRDTVRFAEEEVQKAEERVKKASNDLTDYR 206 (372)
T ss_pred eEEEEeecChhhHHHHHHH---HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56788889864 8998874 3455554445444 344555666666677778889988888877655
No 454
>PRK12367 short chain dehydrogenase; Provisional
Probab=72.77 E-value=9.5 Score=42.43 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=52.1
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCc-hHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~-~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
+.++|.|. +.+|..+++.|.++|.+|+++++++ +..+...+.....+..|.+|.+.+++. ..+.|.+|-..+
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~iDilVnnAG 88 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQ-LASLDVLILNHG 88 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHh-cCCCCEEEECCc
Confidence 45777776 6699999999999999999999887 332222222235678999999887654 346788776553
No 455
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=72.77 E-value=35 Score=38.44 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=87.5
Q ss_pred cccccccccCCcccHHHHHHHHhhCCCCEEEEeC-Cch--HHHHhhhCCCCEEEccCCC---------------------
Q 001096 1007 DLQDHIILCGFGRVGQIIAQLLSERLIPFVALDV-RSD--RVAIGRALDLPVYFGDAGS--------------------- 1062 (1158)
Q Consensus 1007 ~l~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~-d~~--~v~~l~~~g~~vi~GDasd--------------------- 1062 (1158)
...+-+|-...|.-++.++-.-+..|+|..+|-+ |.. ++...+..|-++++-+++.
T Consensus 71 k~~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~P 150 (323)
T KOG1251|consen 71 KRAKGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHP 150 (323)
T ss_pred hhcCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCC
Confidence 3355678888999999999888888988555433 222 2333455555666555543
Q ss_pred --------------HHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhCCCceEEEEec--ChhhHHHHHHCCCCeeec
Q 001096 1063 --------------REVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAH--DIDHGLNLEKAGATAVVP 1126 (1158)
Q Consensus 1063 --------------~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIara~--d~e~~~~L~~aGAd~VI~ 1126 (1158)
.|.|++.| ..|++++..+--..-.-+++.+|.+.|+++|++... -.+....+.+-++-++-.
T Consensus 151 y~~p~vIaGqgTiA~ElleqVg--~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~t 228 (323)
T KOG1251|consen 151 YNHPSVIAGQGTIALELLEQVG--EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDT 228 (323)
T ss_pred CCCcceeeccchHHHHHHHhhC--ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCC
Confidence 34577777 789999999888877889999999999999999877 345556677777777655
Q ss_pred CCcHH
Q 001096 1127 ETLEP 1131 (1158)
Q Consensus 1127 p~~~a 1131 (1158)
|+.++
T Consensus 229 p~TIA 233 (323)
T KOG1251|consen 229 PKTIA 233 (323)
T ss_pred chhhh
Confidence 55444
No 456
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=72.72 E-value=12 Score=41.60 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=59.1
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCchHH-------------------H----HhhhC--CC--CEEEccC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRV-------------------A----IGRAL--DL--PVYFGDA 1060 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~~v-------------------~----~l~~~--g~--~vi~GDa 1060 (1158)
+.+++|+|.|-+|..+++.|...|+ .++++|.|.-.. + ++++. .. ..+....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i 90 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 4689999999999999999999998 899999884211 1 11111 11 2233322
Q ss_pred CCHHHHHhcCccccCEEEEecCCchhhHHHHHHHHhhC
Q 001096 1061 GSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1158)
Q Consensus 1061 sd~e~L~~AgI~~A~~VIi~t~dd~~Nl~i~l~ar~l~ 1098 (1158)
+ ++.+...-..+.|+||.++++...-..+...+++.+
T Consensus 91 ~-~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ 127 (231)
T cd00755 91 T-PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK 127 (231)
T ss_pred C-HhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC
Confidence 2 333433333468999999998876666666676654
No 457
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=72.65 E-value=7 Score=38.46 Aligned_cols=85 Identities=16% Similarity=0.043 Sum_probs=49.4
Q ss_pred ccccC-CcccHHHHHHHHhh-CCCCEEEE-eCCchHHHHhhhCC--CC-EEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1012 IILCG-FGRVGQIIAQLLSE-RLIPFVAL-DVRSDRVAIGRALD--LP-VYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1012 vVIiG-~G~vG~~Ia~~L~e-~g~~VvVI-D~d~~~v~~l~~~g--~~-vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
+.|+| .|..|..+++.|.+ .+++++.+ +.+.++.+.++..+ .. ++..+. +.+.+. ..++|+++++++++.
T Consensus 2 i~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~DvV~~~~~~~~ 77 (122)
T smart00859 2 VAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFE---ELAVDIVFLALPHGV 77 (122)
T ss_pred EEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCccccccccccc-ccCChh---hcCCCEEEEcCCcHH
Confidence 56889 59999999999988 47888777 54443333333222 11 112222 223333 247899999999985
Q ss_pred hhHHHHHHHHhhCCC
Q 001096 1086 ANYRTVWALSKYFPN 1100 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l~p~ 1100 (1158)
..-.+....+...++
T Consensus 78 ~~~~~~~~~~~~~~g 92 (122)
T smart00859 78 SKEIAPLLPKAAEAG 92 (122)
T ss_pred HHHHHHHHHhhhcCC
Confidence 443332233444554
No 458
>PRK07856 short chain dehydrogenase; Provisional
Probab=72.56 E-value=5.5 Score=43.68 Aligned_cols=70 Identities=11% Similarity=0.010 Sum_probs=51.6
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC------ccccCEEEEec
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITL 1081 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag------I~~A~~VIi~t 1081 (1158)
+.++|.|. +.+|+.+++.|.++|++|++++++++. .....+..++.+|.++++.++++= ..+.|.+|-..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 83 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNA 83 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45677775 679999999999999999999998765 122335678899999998775531 13467877644
No 459
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=72.53 E-value=15 Score=43.05 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=53.4
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH-
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR- 1089 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~- 1089 (1158)
.+.|+|+|.+|+.+++.|...|.+|++.|.+++..... .. . ..+ ++++ ++++|+|++.++....+..
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~-~---~~~---l~el-l~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LT-Y---KDS---VKEA-IKDADIISLHVPANKESYHL 215 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hh-c---cCC---HHHH-HhcCCEEEEeCCCcHHHHHH
Confidence 58999999999999999999999999999887643211 00 0 112 2221 4578999999988754333
Q ss_pred -HHHHHHhhCCCceE
Q 001096 1090 -TVWALSKYFPNVKT 1103 (1158)
Q Consensus 1090 -i~l~ar~l~p~~~I 1103 (1158)
-........|+..+
T Consensus 216 i~~~~l~~mk~gavl 230 (330)
T PRK12480 216 FDKAMFDHVKKGAIL 230 (330)
T ss_pred HhHHHHhcCCCCcEE
Confidence 23333444455433
No 460
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=72.38 E-value=3.6 Score=48.78 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=45.6
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI 1071 (1158)
..|+|+|.|..|..++-.|.+.|++|+++|..+.. ....| ..+.-.+...+.|+++|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~---~~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRE---LLERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccc---cccCc-eeeeecHhHHHHHHHcCC
Confidence 45899999999999999999999999999998322 22223 455556667778888887
No 461
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=72.22 E-value=9.2 Score=46.56 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=53.3
Q ss_pred ccccccCCcccHHH-HHHHHhhCCCCEEEEeCCch-HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1010 DHIILCGFGRVGQI-IAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~-Ia~~L~e~g~~VvVID~d~~-~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
+++.++|.|..|.. +++.|.+.|++|.+.|.++. ..+.+++.|+.++.|. +++.+ +++|.||+.-+=+..|
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~~~~-----~~~d~vv~spgi~~~~ 80 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DAENI-----KDADVVVYSSAIPDDN 80 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHC-----CCCCEEEECCCCCCCC
Confidence 46899999999999 79999999999999997653 3345677788887654 34443 4578776665544444
Q ss_pred H
Q 001096 1088 Y 1088 (1158)
Q Consensus 1088 l 1088 (1158)
-
T Consensus 81 ~ 81 (461)
T PRK00421 81 P 81 (461)
T ss_pred H
Confidence 3
No 462
>PLN02602 lactate dehydrogenase
Probab=72.10 E-value=15 Score=43.50 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=63.0
Q ss_pred ccccccCCcccHHHHHHHHhhCCC--CEEEEeCCchHHHHh----hhC----CCCEEEccCCCHHHHHhcCccccCEEEE
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RAL----DLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~--~VvVID~d~~~v~~l----~~~----g~~vi~GDasd~e~L~~AgI~~A~~VIi 1079 (1158)
.++.|+|.|.+|..++-.|...+. +++++|.++++.+-. .+. +..-+.++. + . ..+++||.||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~-d---y--~~~~daDiVVi 111 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAST-D---Y--AVTAGSDLCIV 111 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCC-C---H--HHhCCCCEEEE
Confidence 489999999999999999987776 699999998765322 111 112333321 2 1 23678999999
Q ss_pred ecCCc-----------hhhH----HHHHHHHhhCCCceEEEEec
Q 001096 1080 TLDTP-----------GANY----RTVWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1080 ~t~dd-----------~~Nl----~i~l~ar~l~p~~~IIara~ 1108 (1158)
+.+.+ ..|. .++..+++.+|+..+++.+|
T Consensus 112 tAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 112 TAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 86653 2444 45667788899977666664
No 463
>PRK07576 short chain dehydrogenase; Provisional
Probab=72.08 E-value=6.6 Score=43.66 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=51.9
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhC--CCCEEEccCCCHHHHHhc------CccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKV------GAERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~--g~~vi~GDasd~e~L~~A------gI~~A~~ 1076 (1158)
++++|.|. |.+|..+++.|.+.|+.|++++++++..+.. ... ...++.+|.++++.++++ .....|+
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~ 89 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDV 89 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46777776 7899999999999999999999987765433 222 345678999998877553 1235677
Q ss_pred EEEe
Q 001096 1077 AAIT 1080 (1158)
Q Consensus 1077 VIi~ 1080 (1158)
+|..
T Consensus 90 vi~~ 93 (264)
T PRK07576 90 LVSG 93 (264)
T ss_pred EEEC
Confidence 7644
No 464
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=72.07 E-value=22 Score=36.22 Aligned_cols=88 Identities=10% Similarity=-0.031 Sum_probs=56.5
Q ss_pred hhCCCCEEE--ccCCCHHHHHhcCccccCEEEEecCCchh--hH-HHHHHHHhhCC-CceEEEEec-ChhhHHHHHHCCC
Q 001096 1049 RALDLPVYF--GDAGSREVLHKVGAERACAAAITLDTPGA--NY-RTVWALSKYFP-NVKTFVRAH-DIDHGLNLEKAGA 1121 (1158)
Q Consensus 1049 ~~~g~~vi~--GDasd~e~L~~AgI~~A~~VIi~t~dd~~--Nl-~i~l~ar~l~p-~~~IIara~-d~e~~~~L~~aGA 1121 (1158)
+..|+.|+. +|.+-++..+.+--++++++.++.-+... +. .++..+++.++ ++++++=-. -.+....|+++|+
T Consensus 27 ~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 27 ADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred HhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 444555554 24445566677777789988777655422 22 34455666555 566777632 3345778999999
Q ss_pred CeeecCCcHHHHHHH
Q 001096 1122 TAVVPETLEPSLQLA 1136 (1158)
Q Consensus 1122 d~VI~p~~~a~~~LA 1136 (1158)
|.++.|.......+.
T Consensus 107 d~~~~~gt~~~~i~~ 121 (132)
T TIGR00640 107 AEIFGPGTPIPESAI 121 (132)
T ss_pred CEEECCCCCHHHHHH
Confidence 999999887766443
No 465
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=71.83 E-value=5.7 Score=43.65 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=52.5
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh----h----CCCCEEEccCCCHHHHHhcC------cccc
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A----LDLPVYFGDAGSREVLHKVG------AERA 1074 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~----~----~g~~vi~GDasd~e~L~~Ag------I~~A 1074 (1158)
+.++|.|. +.+|..+++.|.++|++|++++++++..+... . .....+.+|.++++.+.++- ....
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~i 82 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRV 82 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 34667665 67999999999999999999999876554332 1 13667889999988776441 1356
Q ss_pred CEEEEecC
Q 001096 1075 CAAAITLD 1082 (1158)
Q Consensus 1075 ~~VIi~t~ 1082 (1158)
|++|-..+
T Consensus 83 d~vv~~ag 90 (259)
T PRK12384 83 DLLVYNAG 90 (259)
T ss_pred CEEEECCC
Confidence 77776553
No 466
>PRK07478 short chain dehydrogenase; Provisional
Probab=71.72 E-value=6.2 Score=43.30 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=52.8
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHhh----hC--CCCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~----~~--g~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. +.+|..+++.|.+.|++|++++++++..+.+. +. ...++.+|.++++.++++= ..+.|+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 86 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLDI 86 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 45777775 67999999999999999999999987765442 22 3556789999998665431 125677
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-..+
T Consensus 87 li~~ag 92 (254)
T PRK07478 87 AFNNAG 92 (254)
T ss_pred EEECCC
Confidence 765543
No 467
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.67 E-value=9.5 Score=42.31 Aligned_cols=71 Identities=10% Similarity=-0.095 Sum_probs=49.8
Q ss_pred ccccccCCc---ccHHHHHHHHhhCCCCEEEEeCCchH---HHHhhhC--CCCEEEccCCCHHHHHhc------CccccC
Q 001096 1010 DHIILCGFG---RVGQIIAQLLSERLIPFVALDVRSDR---VAIGRAL--DLPVYFGDAGSREVLHKV------GAERAC 1075 (1158)
Q Consensus 1010 ~hvVIiG~G---~vG~~Ia~~L~e~g~~VvVID~d~~~---v~~l~~~--g~~vi~GDasd~e~L~~A------gI~~A~ 1075 (1158)
+.++|.|.+ .+|+.+++.|.+.|.+|++.+.+++. .+.+.+. ...++..|.+|++..+++ ...+.|
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ld 90 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRLD 90 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCCC
Confidence 567888875 69999999999999999999988643 2333221 234678999998876542 113566
Q ss_pred EEEEe
Q 001096 1076 AAAIT 1080 (1158)
Q Consensus 1076 ~VIi~ 1080 (1158)
++|..
T Consensus 91 ~lv~n 95 (258)
T PRK07533 91 FLLHS 95 (258)
T ss_pred EEEEc
Confidence 76643
No 468
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.64 E-value=7.4 Score=42.78 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=53.7
Q ss_pred ccccccC-CcccHHHHHHHHhhCCCCEEEEeCCc-hHHHHhhhCCCCEEEccCCCHHHHHhcC------ccccCEEEEec
Q 001096 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITL 1081 (1158)
Q Consensus 1010 ~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~-~~v~~l~~~g~~vi~GDasd~e~L~~Ag------I~~A~~VIi~t 1081 (1158)
+.++|.| .+.+|..+++.|.+.|++|+++..+. +..+.+++.+..++..|.+|++.++++= ..+.|++|-..
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 87 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNA 87 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4577777 58899999999999999998886554 3445555557888999999998876541 23567777554
No 469
>PLN02735 carbamoyl-phosphate synthase
Probab=71.61 E-value=14 Score=49.95 Aligned_cols=114 Identities=20% Similarity=0.275 Sum_probs=73.2
Q ss_pred cccccccCCccc-----------HHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHh-cCccccCE
Q 001096 1009 QDHIILCGFGRV-----------GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK-VGAERACA 1076 (1158)
Q Consensus 1009 ~~hvVIiG~G~v-----------G~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~-AgI~~A~~ 1076 (1158)
.+.++|+|.|.. |..+++.|++.|++|+++|.|++.+....+....++. ++.+++.+.+ +.-++.|+
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi-~p~~~e~v~~ii~~e~~D~ 101 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYI-APMTPELVEQVIAKERPDA 101 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEe-CCCCHHHHHHHHHHhCCCE
Confidence 457999999985 7789999999999999999999764222222222333 6677777765 45568899
Q ss_pred EEEecCCc-hhhHHHHHH----HHhh-----CCCceEEEEecChh-hHHHHHHCCCCe
Q 001096 1077 AAITLDTP-GANYRTVWA----LSKY-----FPNVKTFVRAHDID-HGLNLEKAGATA 1123 (1158)
Q Consensus 1077 VIi~t~dd-~~Nl~i~l~----ar~l-----~p~~~IIara~d~e-~~~~L~~aGAd~ 1123 (1158)
|+.+++.+ ..|+...+. +.++ .++...+..+.|.. ....+++.|+..
T Consensus 102 Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpv 159 (1102)
T PLN02735 102 LLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKT 159 (1102)
T ss_pred EEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 98887544 344433222 2222 23334444555654 445678888764
No 470
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.60 E-value=22 Score=39.21 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=60.0
Q ss_pred ccccccCCcccHHHHHHHHhhCCC---C-EEEEeC-CchHHHHhhh-CCCCEEEccCCCHHHHHhcCccccCEEEEecCC
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLI---P-FVALDV-RSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~---~-VvVID~-d~~~v~~l~~-~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~d 1083 (1158)
.++.|+|.|.+|..++..|.+.+. . +++.++ ++++.+.+.+ .+..+ .. +.+.+ ++++|.|++++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~DiViiavp~ 76 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-TT---DWKQH----VTSVDTIVLAMPP 76 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-eC---ChHHH----HhcCCEEEEecCH
Confidence 358899999999999999987763 3 556665 4677766654 35432 22 22211 2478999999998
Q ss_pred chhhHHHHHHHHhhCCCceEEEEecChhhHHHHHH
Q 001096 1084 PGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK 1118 (1158)
Q Consensus 1084 d~~Nl~i~l~ar~l~p~~~IIara~d~e~~~~L~~ 1118 (1158)
+...- ++..++...++ ++|+.+.-.-..+.+++
T Consensus 77 ~~~~~-v~~~l~~~~~~-~~vis~~~gi~~~~l~~ 109 (245)
T PRK07634 77 SAHEE-LLAELSPLLSN-QLVVTVAAGIGPSYLEE 109 (245)
T ss_pred HHHHH-HHHHHHhhccC-CEEEEECCCCCHHHHHH
Confidence 75432 33334433333 45555554444444544
No 471
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=71.60 E-value=5 Score=49.17 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=70.3
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-CCCCEEEc-----cCCCHHHH-HhcCccccCEEEEecC
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFG-----DAGSREVL-HKVGAERACAAAITLD 1082 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-~g~~vi~G-----Dasd~e~L-~~AgI~~A~~VIi~t~ 1082 (1158)
+.++|+|.|.++.++++.+++.|+++++++.|++......+ .+..+..| +..|.+.+ +-+.-.++|+|+...+
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 46899999999999999999999999999998876322221 12222222 33454444 4444457888876654
Q ss_pred CchhhHHHHHHHHhhC-----CCceEEEEecCh-hhHHHHHHCCCCe
Q 001096 1083 TPGANYRTVWALSKYF-----PNVKTFVRAHDI-DHGLNLEKAGATA 1123 (1158)
Q Consensus 1083 dd~~Nl~i~l~ar~l~-----p~~~IIara~d~-e~~~~L~~aGAd~ 1123 (1158)
-...|..++..+.+++ |+..++..+.|. .....++++|+..
T Consensus 83 ~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~ 129 (472)
T PRK07178 83 FLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPV 129 (472)
T ss_pred CcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 4445544445544443 444444444454 3445567777664
No 472
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=71.52 E-value=6.2 Score=43.71 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=53.4
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. +.+|..+++.|.++|..|++++.+++..+.. +..+ +..+.+|.++++.++++- ....|.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 90 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDI 90 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 45677665 6799999999999999999999988766443 2223 567789999998875532 235677
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|....
T Consensus 91 li~~ag 96 (265)
T PRK07097 91 LVNNAG 96 (265)
T ss_pred EEECCC
Confidence 775553
No 473
>PRK09135 pteridine reductase; Provisional
Probab=71.35 E-value=7.1 Score=42.25 Aligned_cols=73 Identities=19% Similarity=0.070 Sum_probs=52.4
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCc-hHHHHh----hh---CCCCEEEccCCCHHHHHhcCc------ccc
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRS-DRVAIG----RA---LDLPVYFGDAGSREVLHKVGA------ERA 1074 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~-~~v~~l----~~---~g~~vi~GDasd~e~L~~AgI------~~A 1074 (1158)
+.++|.|. |.+|+.+++.|.++|++|++++++. +..+.+ .+ ....++.+|.++++.+.++-- .+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFGRL 86 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46777774 7899999999999999999999753 322222 21 246678999999998765421 256
Q ss_pred CEEEEecC
Q 001096 1075 CAAAITLD 1082 (1158)
Q Consensus 1075 ~~VIi~t~ 1082 (1158)
|+||-..+
T Consensus 87 d~vi~~ag 94 (249)
T PRK09135 87 DALVNNAS 94 (249)
T ss_pred CEEEECCC
Confidence 78776654
No 474
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.31 E-value=3.1e+02 Score=36.31 Aligned_cols=76 Identities=34% Similarity=0.481 Sum_probs=45.0
Q ss_pred HHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHH-HHhhhHHHHHH-----------HHHHHHHHH
Q 001096 272 AAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAE--KAQM-NALKAEEDVAN-----------IMLLAEQAV 337 (1158)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~--~~~~-~~~~a~~~~~~-----------~m~~ae~av 337 (1158)
.++-|+...+..|..-..|+..|...||-|+.++|.+.-+-. +-|. +|+-|||-|.- +|+|=|. |
T Consensus 393 ~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeet-v 471 (1243)
T KOG0971|consen 393 SEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEET-V 471 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHH-H
Confidence 344555556666655566777777777777777776543322 2233 45678887764 4544332 3
Q ss_pred HHHHHHhhhccc
Q 001096 338 AFEIEATQRVND 349 (1158)
Q Consensus 338 ~~e~e~~~~~~~ 349 (1158)
.+|||..-+|+
T Consensus 472 -~dlEalee~~E 482 (1243)
T KOG0971|consen 472 -GDLEALEEMNE 482 (1243)
T ss_pred -HHHHHHHHHHH
Confidence 35777766665
No 475
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=71.28 E-value=22 Score=39.93 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=63.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCCC-EEEEeCCchHHHHhhhCCCCEEEccCCC-HHHHHhc-CccccCEEEEecCCch
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRALDLPVYFGDAGS-REVLHKV-GAERACAAAITLDTPG 1085 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~-VvVID~d~~~v~~l~~~g~~vi~GDasd-~e~L~~A-gI~~A~~VIi~t~dd~ 1085 (1158)
.+.++|.|.|.+|...++.++..|.. |+++|.++++.+.+++.|...+.- ..+ .+.+.+. +-..+|.++-+++.+.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 35688899999999999999999987 888999999998888888755442 222 2223322 3346899888877653
Q ss_pred hhHHHHHHHHhhCCCceEEEE
Q 001096 1086 ANYRTVWALSKYFPNVKTFVR 1106 (1158)
Q Consensus 1086 ~Nl~i~l~ar~l~p~~~IIar 1106 (1158)
. +-..++.+.|.-+++..
T Consensus 200 ~---~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 200 A---VRACLESLDVGGTAVLA 217 (280)
T ss_pred H---HHHHHHHhcCCCEEEEe
Confidence 2 22233444454455443
No 476
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=71.26 E-value=7.2 Score=46.18 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=53.8
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcC-ccccCEEEEecCC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG-AERACAAAITLDT 1083 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~Ag-I~~A~~VIi~t~d 1083 (1158)
+..++|+|.|..|..++..+.+.|++++++|.+++..... .....+..|..|++.+.++- -.+.|+|+...++
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH--hhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCc
Confidence 4579999999999999999999999999999998653222 12235778888877765542 2357777665554
No 477
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.22 E-value=24 Score=40.74 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=30.5
Q ss_pred cccccCCcccHHHHHHHHhhCCCCEEEEeCCch
Q 001096 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSD 1043 (1158)
Q Consensus 1011 hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~ 1043 (1158)
++.|+|.|.+|..++..|...|++|+++++++.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 588999999999999999999999999998753
No 478
>PRK06139 short chain dehydrogenase; Provisional
Probab=71.15 E-value=6.5 Score=45.79 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=55.0
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. +.+|..+++.|.++|.+|++++++++..+.. ++.| ..++..|.+|++.++++- ....|.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 87 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRIDV 87 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 46788887 6899999999999999999999998876543 3334 446789999998876541 135677
Q ss_pred EEEecC
Q 001096 1077 AAITLD 1082 (1158)
Q Consensus 1077 VIi~t~ 1082 (1158)
+|-..+
T Consensus 88 lVnnAG 93 (330)
T PRK06139 88 WVNNVG 93 (330)
T ss_pred EEECCC
Confidence 766553
No 479
>PLN02858 fructose-bisphosphate aldolase
Probab=71.14 E-value=19 Score=49.97 Aligned_cols=109 Identities=12% Similarity=-0.017 Sum_probs=73.4
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
+++-++|.|.+|..+++.|.+.|++|.+.|.++++.+.+.+.|.... .++..+- +.++.||++..|+..-..
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~----~s~~e~a----~~advVi~~l~~~~~v~~ 76 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRC----DSPAEAA----KDAAALVVVLSHPDQVDD 76 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeec----CCHHHHH----hcCCEEEEEcCChHHHHH
Confidence 45778999999999999999999999999999999999988875432 2333332 368999999999865444
Q ss_pred HHH----HHHhhCCCceEEEEe--cChhhH----HHHHHCC--CCeeecC
Q 001096 1090 TVW----ALSKYFPNVKTFVRA--HDIDHG----LNLEKAG--ATAVVPE 1127 (1158)
Q Consensus 1090 i~l----~ar~l~p~~~IIara--~d~e~~----~~L~~aG--Ad~VI~p 1127 (1158)
+.. .+....|. .+++-. .+++.. +.+.+.| +..+-.|
T Consensus 77 V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP 125 (1378)
T PLN02858 77 VFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY 125 (1378)
T ss_pred HHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 432 22233333 344433 344444 3445667 5554444
No 480
>PRK07775 short chain dehydrogenase; Provisional
Probab=71.13 E-value=6.7 Score=43.85 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=52.9
Q ss_pred cccccccC-CcccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhC--CCCEEEccCCCHHHHHhc------CccccC
Q 001096 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKV------GAERAC 1075 (1158)
Q Consensus 1009 ~~hvVIiG-~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~--g~~vi~GDasd~e~L~~A------gI~~A~ 1075 (1158)
++.++|.| .|-+|+.+++.|.++|+.|++++++++..... ... .+.++.+|.++++.+.++ .....|
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 89 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIE 89 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 34677777 58899999999999999999999887654433 222 345678999999987642 123567
Q ss_pred EEEEecC
Q 001096 1076 AAAITLD 1082 (1158)
Q Consensus 1076 ~VIi~t~ 1082 (1158)
++|-...
T Consensus 90 ~vi~~Ag 96 (274)
T PRK07775 90 VLVSGAG 96 (274)
T ss_pred EEEECCC
Confidence 7765553
No 481
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.03 E-value=30 Score=30.89 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=44.4
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001096 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1158)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~ 316 (1158)
|-.|-...+++++.|++...+++..|+.-..+-.+|+.||++|.+--+..+
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667889999999999999999999999999999999999988766544
No 482
>PRK09414 glutamate dehydrogenase; Provisional
Probab=71.02 E-value=13 Score=45.47 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=72.5
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEE-e----------CCchHHHHhhhCC---CCEEE---c-cCCCHHHHHhcC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVAL-D----------VRSDRVAIGRALD---LPVYF---G-DAGSREVLHKVG 1070 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVI-D----------~d~~~v~~l~~~g---~~vi~---G-Dasd~e~L~~Ag 1070 (1158)
..+++|.|+|.+|+.+++.|.+.|..|+.+ | .|.+.+....+.. +.-+. | ...+.+.+..
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~-- 309 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS-- 309 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc--
Confidence 357999999999999999999999999988 7 5666554443321 11111 0 1112222222
Q ss_pred ccccCEEEEecCCchhhHHHHHHHHhhCCCceEEEEecC----hhhHHHHHHCCCCe
Q 001096 1071 AERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATA 1123 (1158)
Q Consensus 1071 I~~A~~VIi~t~dd~~Nl~i~l~ar~l~p~~~IIara~d----~e~~~~L~~aGAd~ 1123 (1158)
-++|++|=+.-.+..|-.-+..++. .++++|+..-| ++..+.|.+-|+-.
T Consensus 310 -~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~rGI~~ 363 (445)
T PRK09414 310 -VPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLEAGVLF 363 (445)
T ss_pred -cCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHHCCcEE
Confidence 2588888777776666666655553 25788888765 56778888877644
No 483
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=70.95 E-value=6.1 Score=53.22 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=50.5
Q ss_pred cccccccCCccc--H---------HHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCH-HHHHhcCccccCE
Q 001096 1009 QDHIILCGFGRV--G---------QIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSR-EVLHKVGAERACA 1076 (1158)
Q Consensus 1009 ~~hvVIiG~G~v--G---------~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~-e~L~~AgI~~A~~ 1076 (1158)
++.++|+|.|.. | ..+++.|++.|++++++|.|++.+....+.....++ ++.+. .++.-+.-++.+.
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~-ep~~~e~vl~i~~~e~idg 632 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYF-EPLTFEDVMNIIELEKPEG 632 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEE-ecCCHHHHHHHHhhcCCCE
Confidence 468999998875 4 477999999999999999999875322222222333 44444 4445556667888
Q ss_pred EEEecCCc
Q 001096 1077 AAITLDTP 1084 (1158)
Q Consensus 1077 VIi~t~dd 1084 (1158)
||...++.
T Consensus 633 VI~~~gg~ 640 (1050)
T TIGR01369 633 VIVQFGGQ 640 (1050)
T ss_pred EEEccCcH
Confidence 87666544
No 484
>PRK10263 DNA translocase FtsK; Provisional
Probab=70.94 E-value=1.4e+02 Score=41.07 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHh
Q 001096 845 SMALGAFLAGLL 856 (1158)
Q Consensus 845 s~vLGAFvAGLi 856 (1158)
.+++|.++.+++
T Consensus 143 GGIIG~lLs~lL 154 (1355)
T PRK10263 143 GGVIGSLLSTTL 154 (1355)
T ss_pred cchHHHHHHHHH
Confidence 455555554443
No 485
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.83 E-value=10 Score=45.64 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=50.4
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCch----HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCc
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~----~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd 1084 (1158)
++++|+|.|..|..+++.|.+.|.+|++.|.++. ..+.+++.|..+..|+... +.+.+ .++.||...+=+
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~----~~d~vV~s~gi~ 79 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPL-ELLDE----DFDLMVKNPGIP 79 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCH-HHhcC----cCCEEEECCCCC
Confidence 4689999999999999999999999999997652 2345667788888775332 22211 377776655333
No 486
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=70.82 E-value=6.9 Score=49.26 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=50.2
Q ss_pred cccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEE
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAA 1077 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~V 1077 (1158)
.+.+.|+|.|..|+.++...++.|++|+++|.+++... .......+.+|..|.+.+.++--+ ++++
T Consensus 22 ~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa--~~~AD~~~v~~~~D~~~l~~~a~~-~dvI 87 (577)
T PLN02948 22 ETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPA--SSVAARHVVGSFDDRAAVREFAKR-CDVL 87 (577)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCch--hhhCceeeeCCCCCHHHHHHHHHH-CCEE
Confidence 55688999999999999999999999999999887432 111234566899998888765433 5654
No 487
>PTZ00117 malate dehydrogenase; Provisional
Probab=70.78 E-value=22 Score=41.35 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=60.4
Q ss_pred cccccccCCcccHHHHHHHHhhCC-CCEEEEeCCchHHHH--h--hh----CCCC-EEEccCCCHHHHHhcCccccCEEE
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAI--G--RA----LDLP-VYFGDAGSREVLHKVGAERACAAA 1078 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g-~~VvVID~d~~~v~~--l--~~----~g~~-vi~GDasd~e~L~~AgI~~A~~VI 1078 (1158)
+.++.|+|.|.+|..++..+...+ .+++++|.|++..+. + .. .+.. .+.+ .+|.+ .+.+||.||
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~-----~l~~ADiVV 78 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE-----DIKDSDVVV 78 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH-----HhCCCCEEE
Confidence 347899999999999999998888 589999999876431 1 11 1111 2222 12322 346799999
Q ss_pred EecCCch-----------hh----HHHHHHHHhhCCCceEEEEec
Q 001096 1079 ITLDTPG-----------AN----YRTVWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1079 i~t~dd~-----------~N----l~i~l~ar~l~p~~~IIara~ 1108 (1158)
++.+-+. .| ..++..+.+..|+..++.-+|
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9884321 12 245667777888865555444
No 488
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.76 E-value=11 Score=45.63 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=54.1
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchH--HHHhhh--CCCCEEEccCCCHHHHHhcCccccCEEEEecCCch
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR--VAIGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~--v~~l~~--~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~ 1085 (1158)
++++|+|.|..|..+++.|.++|+.|++.|.++.. .+.+++ .|+.++.|...+. .+ .++|.||....=+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~-~~-----~~~d~vv~spgi~~ 79 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA-LD-----NGFDILALSPGISE 79 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH-HH-----hCCCEEEECCCCCC
Confidence 47899999999999999999999999999976543 344544 4777877764422 22 46788888776665
Q ss_pred hhH
Q 001096 1086 ANY 1088 (1158)
Q Consensus 1086 ~Nl 1088 (1158)
.|-
T Consensus 80 ~~p 82 (445)
T PRK04308 80 RQP 82 (445)
T ss_pred CCH
Confidence 443
No 489
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=70.73 E-value=17 Score=41.85 Aligned_cols=92 Identities=24% Similarity=0.271 Sum_probs=62.5
Q ss_pred ccccCCcccHHHHHHHHhhCC--CCEEEEeCCchHHHHhhh----C----CCCEEEccCCCHHHHHhcCccccCEEEEec
Q 001096 1012 IILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRA----L----DLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1158)
Q Consensus 1012 vVIiG~G~vG~~Ia~~L~e~g--~~VvVID~d~~~v~~l~~----~----g~~vi~GDasd~e~L~~AgI~~A~~VIi~t 1081 (1158)
+.|+|.|.+|..++-.|...| .+++++|.++++.+.... . ....+.. ..+ .+ .+++||.||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~---~~--~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD---YA--DAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC---HH--HhCCCCEEEEcC
Confidence 468999999999999998888 579999999987653321 1 1112221 111 22 567899999988
Q ss_pred CCch-----------hhHH----HHHHHHhhCCCceEEEEecC
Q 001096 1082 DTPG-----------ANYR----TVWALSKYFPNVKTFVRAHD 1109 (1158)
Q Consensus 1082 ~dd~-----------~Nl~----i~l~ar~l~p~~~IIara~d 1109 (1158)
+.+. .|.. ++..+++.+|+..+++-.+=
T Consensus 75 g~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 75 GAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 7542 3433 55577888899887776643
No 490
>PRK07109 short chain dehydrogenase; Provisional
Probab=70.70 E-value=5.9 Score=46.11 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=53.0
Q ss_pred ccccccCC-cccHHHHHHHHhhCCCCEEEEeCCchHHHHh----hhCC--CCEEEccCCCHHHHHhcC------ccccCE
Q 001096 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1158)
Q Consensus 1010 ~hvVIiG~-G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l----~~~g--~~vi~GDasd~e~L~~Ag------I~~A~~ 1076 (1158)
+.++|.|. +.+|..+++.|.+.|.+|++++++++..+.. +..| ..++.+|.+|++.++++- ....|.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~ 88 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPIDT 88 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCE
Confidence 45777775 7899999999999999999999998776543 2333 456789999999886541 125677
Q ss_pred EEEec
Q 001096 1077 AAITL 1081 (1158)
Q Consensus 1077 VIi~t 1081 (1158)
+|-..
T Consensus 89 lInnA 93 (334)
T PRK07109 89 WVNNA 93 (334)
T ss_pred EEECC
Confidence 66544
No 491
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=70.69 E-value=22 Score=44.30 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=55.1
Q ss_pred ccccccCCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhhHH
Q 001096 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1158)
Q Consensus 1010 ~hvVIiG~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~Nl~ 1089 (1158)
+.+.|+|+|++|+.+++.|+..|.+|+..|+.... +...+.|+... .+ |+++ +.++|.|++.++....+..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~----~~---l~el-l~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELV----DD---LDEL-LARADFITVHTPLTPETRG 209 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEc----CC---HHHH-HhhCCEEEEccCCChhhcc
Confidence 45889999999999999999999999999974321 22333444221 12 2222 3478999998887654433
Q ss_pred H--HHHHHhhCCCceEE
Q 001096 1090 T--VWALSKYFPNVKTF 1104 (1158)
Q Consensus 1090 i--~l~ar~l~p~~~II 1104 (1158)
+ ...+....|...+|
T Consensus 210 li~~~~l~~mk~ga~lI 226 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIV 226 (525)
T ss_pred CcCHHHHhcCCCCeEEE
Confidence 3 23444455554433
No 492
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=70.66 E-value=60 Score=35.60 Aligned_cols=98 Identities=10% Similarity=0.160 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHhhcccccccc----cCchhHHHHHHHHHH-------HHHHHHHhcCChhHHHh
Q 001096 613 SVIFVPIFQKIP--GGSPVLGYLAAGILIGPYGLSII----RHVHGTKAIAEFGVV-------FLLFNIGLELSVERLSS 679 (1158)
Q Consensus 613 a~ilg~Ll~Rl~--glP~VVG~ILaGILLGP~gLgli----~~~~~l~~LaeLGLi-------~LLF~aGLelDl~~Lrr 679 (1158)
-++..++.+|++ |++.----|+.|+++...+ |.. +....+..++.+|++ |-.-.-.++.|++++||
T Consensus 25 m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~v~~~e~kk 103 (254)
T TIGR00808 25 MYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATAFEVDVKEVKK 103 (254)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCCccccchhhhhcchhhhhhHHHHHHHHHHHhhcCcHHHHHH
Confidence 333334444432 5666666778888887532 221 112233334333332 12334567899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Q 001096 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGP 712 (1158)
Q Consensus 680 ~~k~il~Lai~gvllt~iivglll~~llGls~~ 712 (1158)
.+..-..--++++++++ ++|....+.+|+.-+
T Consensus 104 aG~~G~vsL~~G~v~~F-~~Ga~vA~afGY~Da 135 (254)
T TIGR00808 104 AGKVGMVALLLGCVIPF-VIGAMVAWAFGYRDA 135 (254)
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHcCCCc
Confidence 99876666677777776 477777778888543
No 493
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.55 E-value=1.8e+02 Score=32.43 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHH--------
Q 001096 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAV-------- 220 (1158)
Q Consensus 149 ~~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~-------- 220 (1158)
++|+.++-+..+..+|+.+.---+-.|+.+......---+.|+-..+-..+..+...+.++ |-.+.|.-
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~---e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEA---EKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH---HHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 3678888889999999999988889999998888888888887777766555433332221 11222211
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhH
Q 001096 221 --HKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKK 298 (1158)
Q Consensus 221 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 298 (1158)
...-.-+..-|.+|..|...++-+ +.-+.-+..-+...+..|..+|..+.....+.
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~----------------------e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEA----------------------ERKYEEVERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH----------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 112223344445555554444432 12233444455566677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 001096 299 EELQKEVDRLNEVAEKAQMNALKA 322 (1158)
Q Consensus 299 ~~~q~~~~~~~~~~~~~~~~~~~a 322 (1158)
.+|+.++..+......-+..--++
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 777777777766655444444333
No 494
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=70.23 E-value=27 Score=34.79 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=55.0
Q ss_pred hhCCCCEEE-c-cCCCHHHHHhcCccccCEEEEecCCchh--h-HHHHHHHHhhCC-CceEEEEecC-hhhHHHHHHCCC
Q 001096 1049 RALDLPVYF-G-DAGSREVLHKVGAERACAAAITLDTPGA--N-YRTVWALSKYFP-NVKTFVRAHD-IDHGLNLEKAGA 1121 (1158)
Q Consensus 1049 ~~~g~~vi~-G-Dasd~e~L~~AgI~~A~~VIi~t~dd~~--N-l~i~l~ar~l~p-~~~IIara~d-~e~~~~L~~aGA 1121 (1158)
+..|+.+++ | +...++..+.+.-.++++|.++..+... . -.++..+++..+ ++++++--.. .+..+.++++|+
T Consensus 24 ~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 24 RDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 445666554 3 3334456677777789998887765422 2 234556667655 6677766333 345788999999
Q ss_pred CeeecCCcHHHH
Q 001096 1122 TAVVPETLEPSL 1133 (1158)
Q Consensus 1122 d~VI~p~~~a~~ 1133 (1158)
|.+|.|....-.
T Consensus 104 d~~~~~~~~~~~ 115 (122)
T cd02071 104 AEIFGPGTSIEE 115 (122)
T ss_pred CEEECCCCCHHH
Confidence 999999776544
No 495
>PRK07041 short chain dehydrogenase; Provisional
Probab=70.23 E-value=12 Score=40.19 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEeCCchHHHHhhh-----CCCCEEEccCCCHHHHHhc--CccccCEEEEecC
Q 001096 1016 GFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKV--GAERACAAAITLD 1082 (1158)
Q Consensus 1016 G~G~vG~~Ia~~L~e~g~~VvVID~d~~~v~~l~~-----~g~~vi~GDasd~e~L~~A--gI~~A~~VIi~t~ 1082 (1158)
+.+.+|+.+++.|.++|++|++++++++..+...+ .+..++.+|.+|++.++++ .+.+.+.+|-...
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag 78 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAA 78 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 45679999999999999999999999877654322 3466788999999988764 2335677776654
No 496
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.23 E-value=3.2e+02 Score=38.22 Aligned_cols=25 Identities=8% Similarity=-0.168 Sum_probs=19.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhH
Q 001096 149 TTDELRELLMNAMKELEVAQLNSTM 173 (1158)
Q Consensus 149 ~~~~~~~~l~~~~~~~e~a~~~~~~ 173 (1158)
..+++.+.+++.++.++..+.-++.
T Consensus 710 ~~~~~~~~~~~~~~~~e~l~~l~~~ 734 (1311)
T TIGR00606 710 KLKSTESELKKKEKRRDEMLGLAPG 734 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4788888888888888887766443
No 497
>PRK02224 chromosome segregation protein; Provisional
Probab=70.18 E-value=3.6e+02 Score=35.72 Aligned_cols=187 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHh--HHH------------
Q 001096 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVN--EEC------------ 214 (1158)
Q Consensus 149 ~~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~------------ 214 (1158)
+++.|++-|+..+.+++.+...-.-++++-+++.+.-=.++.+-...+..+...-..|.+.-. .+.
T Consensus 385 ~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~ 464 (880)
T PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS 464 (880)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCc
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhh
Q 001096 215 -------IAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANC 287 (1158)
Q Consensus 215 -------~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1158)
..++.+.+...-..-.+.+++-+.+-++..+ .....+.++.+++..+.+.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~-----------------------~~~~~~~~l~~l~~~~~~l 521 (880)
T PRK02224 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-----------------------DLVEAEDRIERLEERREDL 521 (880)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 001096 288 ETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIALQRAE 358 (1158)
Q Consensus 288 ~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~~~~~~~~~~~~~~ 358 (1158)
+.++.....+.++.+.+...|++-++..+.++.+++...-.+..-++.+...=.+....+|+.+-.+.+-+
T Consensus 522 ~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=70.11 E-value=9.8 Score=46.15 Aligned_cols=70 Identities=27% Similarity=0.411 Sum_probs=52.3
Q ss_pred cccccCCcccHHH-HHHHHhhCCCCEEEEeCCch-HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecCCchhh
Q 001096 1011 HIILCGFGRVGQI-IAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1158)
Q Consensus 1011 hvVIiG~G~vG~~-Ia~~L~e~g~~VvVID~d~~-~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~dd~~N 1087 (1158)
|+.++|.|..|.. +++.|.+.|++|.+.|.++. ..+.+++.|+.++.| .+++.+ ++++.||..-.=+..|
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g--~~~~~~-----~~~d~vV~spgi~~~~ 72 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIG--HSAENL-----DDADVVVVSAAIKDDN 72 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCC--CCHHHC-----CCCCEEEECCCCCCCC
Confidence 4678999999998 99999999999999997653 345577779988877 455444 4578877665444433
No 499
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=70.06 E-value=2.3e+02 Score=33.40 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHHhcCChh----HHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 001096 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVE----RLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1158)
Q Consensus 629 VVG~ILaGILLGP~gLgli~~~~~l~~LaeLGLi~LLF~aGLelDl~----~Lrr~~k~il~Lai~gvllt~iivglll~ 704 (1158)
++.+.+.|++.+-.. ++...++.+.++--+++|+.+|++=-.. .+.......+..-.+++++|. ....++.
T Consensus 2 ~vLFF~LG~~A~~~k----SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl-~~~~iLr 76 (327)
T PF05982_consen 2 VVLFFILGIIAALLK----SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPL-IAFPILR 76 (327)
T ss_pred chHHHHHHHHHHHHc----CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 445566677666421 2334556677777778887777753332 222222222222233333433 1223334
Q ss_pred HHhCCChHHHHHHhhcccc---CcHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhHHHHHHHH
Q 001096 705 FVSGLPGPASIVIGNGLAL---SSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLIL 764 (1158)
Q Consensus 705 ~llGls~~~AlllGaiLs~---TS~aVVv~iL~el~ll~s~~GrlaLs~sllnDi~aIvll~l 764 (1158)
.+.+++...+..+++--.. ..+++.+..|...++.- .|.+..-.++++--..++.+.+
T Consensus 77 ~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~y--eg~m~a~~alME~PAIival~L 137 (327)
T PF05982_consen 77 RLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISY--EGYMVALLALMESPAIIVALLL 137 (327)
T ss_pred HccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCc--cccHHHHHHHHhhhHHHHHHHH
Confidence 4457777766666654443 44467888888888732 3444444444444333333444
No 500
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=70.03 E-value=7.7 Score=45.27 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred cccccccCCcccHHHHHHHHhhCCC-CEEEEeCCch-----HHHHhhhCCCCEEEccCCCHHHHHhcCccccCEEEEecC
Q 001096 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSD-----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1158)
Q Consensus 1009 ~~hvVIiG~G~vG~~Ia~~L~e~g~-~VvVID~d~~-----~v~~l~~~g~~vi~GDasd~e~L~~AgI~~A~~VIi~t~ 1082 (1158)
...+.|+|.|.+|..++..+...|. +++++|.|++ ..+........-..........++ .+++||.||.+.+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~--~l~~aDiVI~tag 83 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE--DIAGSDVVIVTAG 83 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH--HhCCCCEEEECCC
Q ss_pred Cchh--------------------hHHHHHHHHhhCCCceEEEEec
Q 001096 1083 TPGA--------------------NYRTVWALSKYFPNVKTFVRAH 1108 (1158)
Q Consensus 1083 dd~~--------------------Nl~i~l~ar~l~p~~~IIara~ 1108 (1158)
.+.. -..++..+.+..|+..++.-.|
T Consensus 84 ~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 84 LTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Done!