Query 001097
Match_columns 1158
No_of_seqs 289 out of 295
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 15:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.8E-18 8.2E-23 185.3 14.2 141 569-718 2-156 (352)
2 TIGR01659 sex-lethal sex-letha 99.7 1.1E-17 2.3E-22 186.9 14.0 143 567-718 104-260 (346)
3 TIGR01628 PABP-1234 polyadenyl 99.7 1E-16 2.2E-21 186.4 20.0 149 569-719 87-245 (562)
4 TIGR01628 PABP-1234 polyadenyl 99.7 2.8E-17 6E-22 191.1 13.9 191 572-774 2-210 (562)
5 KOG0107 Alternative splicing f 99.7 1.9E-17 4.1E-22 169.3 6.8 68 570-637 10-82 (195)
6 TIGR01645 half-pint poly-U bin 99.7 2.4E-16 5.3E-21 186.3 15.2 151 569-719 106-272 (612)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 3E-16 6.5E-21 180.8 15.3 148 569-718 1-159 (481)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.4E-16 1.4E-20 168.1 15.1 150 570-719 89-337 (352)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.4E-15 3E-20 175.4 16.0 153 567-719 272-462 (481)
10 TIGR01622 SF-CC1 splicing fact 99.6 1.3E-15 2.8E-20 171.9 14.3 149 568-718 87-253 (457)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.2E-15 6.8E-20 170.7 14.4 153 566-719 171-363 (509)
12 TIGR01648 hnRNP-R-Q heterogene 99.6 2.9E-15 6.3E-20 176.6 14.2 185 570-774 58-267 (578)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.6 8.7E-15 1.9E-19 167.2 15.3 153 567-719 292-490 (509)
14 TIGR01622 SF-CC1 splicing fact 99.6 8.6E-15 1.9E-19 165.3 15.1 152 568-719 184-436 (457)
15 KOG0117 Heterogeneous nuclear 99.6 3.7E-15 7.9E-20 168.2 10.7 133 568-713 81-228 (506)
16 KOG0148 Apoptosis-promoting RN 99.5 3.1E-14 6.6E-19 153.4 11.8 146 568-719 60-226 (321)
17 TIGR01648 hnRNP-R-Q heterogene 99.5 7E-14 1.5E-18 165.2 14.5 144 568-719 136-295 (578)
18 KOG0105 Alternative splicing f 99.4 8.8E-13 1.9E-17 136.5 11.2 146 569-717 5-174 (241)
19 KOG0144 RNA-binding protein CU 99.4 3.7E-13 8.1E-18 151.7 9.0 140 570-717 34-189 (510)
20 KOG0117 Heterogeneous nuclear 99.3 1E-11 2.2E-16 140.8 11.2 205 491-719 91-319 (506)
21 KOG0145 RNA-binding protein EL 99.3 1.6E-11 3.5E-16 132.1 10.1 141 570-719 41-195 (360)
22 PF00076 RRM_1: RNA recognitio 99.2 3E-11 6.4E-16 101.6 6.8 60 573-632 1-65 (70)
23 PLN03134 glycine-rich RNA-bind 99.2 5.9E-11 1.3E-15 118.4 9.7 71 568-638 32-112 (144)
24 KOG0132 RNA polymerase II C-te 99.2 5.6E-09 1.2E-13 124.7 25.7 63 569-631 420-482 (894)
25 KOG0124 Polypyrimidine tract-b 99.1 2.2E-10 4.8E-15 127.6 7.0 150 570-719 113-278 (544)
26 KOG0131 Splicing factor 3b, su 99.0 1E-09 2.3E-14 113.8 10.3 144 570-719 9-165 (203)
27 KOG0106 Alternative splicing f 99.0 5E-10 1.1E-14 119.1 6.7 143 571-719 2-159 (216)
28 PF14259 RRM_6: RNA recognitio 99.0 1.2E-09 2.5E-14 93.8 6.9 60 573-632 1-65 (70)
29 KOG1924 RhoA GTPase effector D 99.0 1.8E-09 3.9E-14 128.5 10.6 53 1007-1079 625-677 (1102)
30 KOG0123 Polyadenylate-binding 99.0 3.3E-09 7.1E-14 120.5 11.9 133 571-719 2-141 (369)
31 KOG0109 RNA-binding protein LA 98.9 1.6E-09 3.4E-14 118.6 7.0 130 572-716 4-135 (346)
32 smart00362 RRM_2 RNA recogniti 98.9 5.3E-09 1.2E-13 85.7 8.2 61 572-632 1-65 (72)
33 COG0724 RNA-binding proteins ( 98.9 1.3E-08 2.8E-13 101.1 12.0 115 570-684 115-254 (306)
34 PLN03120 nucleic acid binding 98.9 4.3E-09 9.3E-14 114.6 8.7 123 570-697 4-138 (260)
35 TIGR01659 sex-lethal sex-letha 98.8 9E-09 1.9E-13 116.0 8.9 71 569-639 192-274 (346)
36 KOG3671 Actin regulatory prote 98.8 1.2E-06 2.7E-11 101.5 25.6 112 582-717 21-139 (569)
37 KOG0122 Translation initiation 98.7 2.2E-08 4.9E-13 107.8 8.5 71 569-639 188-268 (270)
38 KOG0110 RNA-binding protein (R 98.7 3.9E-08 8.5E-13 117.0 11.3 150 563-715 509-677 (725)
39 TIGR01645 half-pint poly-U bin 98.7 1.9E-08 4.2E-13 120.3 8.9 64 569-632 203-272 (612)
40 KOG4206 Spliceosomal protein s 98.7 1.5E-07 3.2E-12 100.5 13.2 155 565-720 4-210 (221)
41 PLN03213 repressor of silencin 98.7 2.9E-08 6.4E-13 114.1 8.0 62 570-631 10-75 (759)
42 KOG0113 U1 small nuclear ribon 98.7 3.2E-08 6.8E-13 108.9 7.9 77 554-632 87-169 (335)
43 cd00590 RRM RRM (RNA recogniti 98.7 7.5E-08 1.6E-12 79.3 8.2 61 572-632 1-66 (74)
44 smart00360 RRM RNA recognition 98.7 5.7E-08 1.2E-12 79.2 7.3 58 575-632 1-64 (71)
45 KOG0121 Nuclear cap-binding pr 98.7 2.8E-08 6.1E-13 98.9 6.5 75 563-637 29-113 (153)
46 KOG1457 RNA binding protein (c 98.7 7.1E-08 1.5E-12 103.0 9.9 151 569-719 33-274 (284)
47 PF13893 RRM_5: RNA recognitio 98.7 4.8E-08 1E-12 81.7 6.8 46 587-632 1-47 (56)
48 KOG0111 Cyclophilin-type pepti 98.7 1.5E-08 3.2E-13 107.8 4.0 93 569-677 9-111 (298)
49 KOG0114 Predicted RNA-binding 98.7 3.9E-08 8.6E-13 95.0 6.5 63 570-632 18-83 (124)
50 KOG0148 Apoptosis-promoting RN 98.6 6.6E-08 1.4E-12 105.4 7.5 64 569-632 163-226 (321)
51 PLN03121 nucleic acid binding 98.6 1E-07 2.3E-12 103.0 8.7 68 570-638 5-77 (243)
52 KOG0123 Polyadenylate-binding 98.6 1.4E-07 3E-12 107.4 10.1 149 571-719 168-337 (369)
53 KOG0144 RNA-binding protein CU 98.6 3.5E-08 7.6E-13 112.4 5.0 72 568-639 122-205 (510)
54 KOG0145 RNA-binding protein EL 98.6 2.5E-07 5.4E-12 100.5 11.1 150 570-719 127-346 (360)
55 KOG1924 RhoA GTPase effector D 98.6 1.3E-07 2.9E-12 113.1 9.8 17 1116-1132 734-750 (1102)
56 KOG4207 Predicted splicing fac 98.5 6.7E-08 1.5E-12 102.3 5.2 69 571-639 14-92 (256)
57 KOG0112 Large RNA-binding prot 98.5 5.5E-08 1.2E-12 117.9 2.7 145 565-719 367-517 (975)
58 KOG0125 Ataxin 2-binding prote 98.4 3.2E-07 7E-12 102.2 6.6 69 570-638 96-170 (376)
59 KOG0151 Predicted splicing reg 98.4 3.2E-07 6.9E-12 109.3 6.9 64 569-632 173-245 (877)
60 KOG0127 Nucleolar protein fibr 98.4 1.1E-06 2.5E-11 102.6 10.6 149 571-719 6-184 (678)
61 KOG4660 Protein Mei2, essentia 98.2 8.9E-07 1.9E-11 103.7 4.1 68 568-635 73-143 (549)
62 KOG0147 Transcriptional coacti 98.2 4.7E-06 1E-10 97.7 9.7 146 571-717 279-514 (549)
63 KOG0146 RNA-binding protein ET 98.2 2E-06 4.4E-11 93.9 5.4 63 569-631 18-85 (371)
64 smart00361 RRM_1 RNA recogniti 98.2 4.4E-06 9.6E-11 73.5 6.5 49 584-632 2-63 (70)
65 KOG0153 Predicted RNA-binding 98.1 4.2E-06 9.1E-11 94.0 7.7 64 569-632 227-290 (377)
66 PHA03247 large tegument protei 98.1 4.4E-05 9.6E-10 100.8 17.4 26 169-194 1762-1788(3151)
67 KOG0149 Predicted RNA-binding 98.0 7.4E-06 1.6E-10 88.4 5.9 57 571-627 13-75 (247)
68 KOG0108 mRNA cleavage and poly 98.0 1E-05 2.2E-10 94.3 7.4 62 571-632 19-86 (435)
69 KOG0109 RNA-binding protein LA 98.0 7E-06 1.5E-10 90.7 5.6 68 568-637 76-145 (346)
70 KOG4205 RNA-binding protein mu 98.0 9.6E-06 2.1E-10 91.0 6.4 131 569-709 5-155 (311)
71 KOG1190 Polypyrimidine tract-b 98.0 5.3E-05 1.2E-09 86.8 11.9 148 569-719 296-478 (492)
72 PHA03247 large tegument protei 97.9 0.00024 5.2E-09 94.2 18.5 18 1008-1025 2958-2975(3151)
73 KOG0147 Transcriptional coacti 97.9 9.7E-06 2.1E-10 95.2 5.7 142 570-717 179-344 (549)
74 KOG0110 RNA-binding protein (R 97.9 2.9E-05 6.4E-10 93.3 8.9 148 571-719 386-586 (725)
75 KOG0130 RNA-binding protein RB 97.8 3E-05 6.5E-10 78.4 5.8 65 573-637 75-149 (170)
76 PF07744 SPOC: SPOC domain; I 97.8 7.5E-07 1.6E-11 84.5 -5.7 112 1013-1125 1-119 (119)
77 KOG3671 Actin regulatory prote 97.7 0.00053 1.2E-08 80.4 15.0 46 584-629 92-138 (569)
78 KOG0127 Nucleolar protein fibr 97.7 0.00029 6.3E-09 83.2 12.9 145 569-713 116-354 (678)
79 KOG0120 Splicing factor U2AF, 97.7 8.1E-05 1.8E-09 87.9 8.5 76 557-632 276-357 (500)
80 KOG1923 Rac1 GTPase effector F 97.7 4.6E-05 1E-09 92.3 5.7 28 1126-1154 457-490 (830)
81 KOG0132 RNA polymerase II C-te 97.7 0.004 8.7E-08 76.3 21.6 61 654-717 420-481 (894)
82 PF00076 RRM_1: RNA recognitio 97.6 6.1E-05 1.3E-09 63.4 4.2 62 658-719 1-65 (70)
83 KOG0126 Predicted RNA-binding 97.6 1E-05 2.2E-10 84.9 -1.1 66 567-632 32-103 (219)
84 KOG1190 Polypyrimidine tract-b 97.5 0.00044 9.6E-09 79.6 10.0 147 572-719 152-361 (492)
85 KOG4208 Nucleolar RNA-binding 97.4 0.00024 5.3E-09 75.8 6.5 71 570-640 49-130 (214)
86 KOG1456 Heterogeneous nuclear 97.4 0.00034 7.4E-09 79.7 7.9 139 568-717 29-183 (494)
87 KOG1457 RNA binding protein (c 97.4 0.00011 2.4E-09 79.3 3.4 65 567-631 207-273 (284)
88 PLN03134 glycine-rich RNA-bind 97.4 0.0003 6.5E-09 70.9 6.1 73 647-719 26-102 (144)
89 PF14259 RRM_6: RNA recognitio 97.3 0.00033 7.1E-09 60.2 4.7 60 658-717 1-63 (70)
90 KOG0131 Splicing factor 3b, su 97.2 0.0004 8.8E-09 73.2 5.4 68 570-637 96-174 (203)
91 KOG0415 Predicted peptidyl pro 97.2 0.00057 1.2E-08 77.6 6.3 86 554-639 223-318 (479)
92 KOG0107 Alternative splicing f 97.1 0.00047 1E-08 72.4 4.3 63 655-718 10-72 (195)
93 KOG4209 Splicing factor RNPS1, 97.0 0.00074 1.6E-08 73.4 5.3 62 570-632 101-168 (231)
94 KOG0116 RasGAP SH3 binding pro 97.0 0.00059 1.3E-08 79.7 4.8 58 569-626 287-350 (419)
95 KOG4212 RNA-binding protein hn 97.0 0.0038 8.2E-08 72.6 11.1 156 558-718 37-281 (608)
96 KOG0226 RNA-binding proteins [ 96.8 0.0012 2.7E-08 72.5 5.0 64 569-632 189-258 (290)
97 KOG0120 Splicing factor U2AF, 96.8 0.002 4.3E-08 76.6 6.5 159 564-723 169-361 (500)
98 KOG0112 Large RNA-binding prot 96.8 0.0011 2.4E-08 81.9 4.3 73 566-638 451-529 (975)
99 smart00362 RRM_2 RNA recogniti 96.7 0.0029 6.3E-08 51.8 5.3 62 657-718 1-64 (72)
100 KOG1548 Transcription elongati 96.6 0.016 3.4E-07 66.3 11.7 149 569-717 133-338 (382)
101 cd00590 RRM RRM (RNA recogniti 96.6 0.004 8.7E-08 51.3 5.3 61 657-717 1-64 (74)
102 KOG1456 Heterogeneous nuclear 96.5 0.03 6.5E-07 64.6 13.1 150 569-719 286-473 (494)
103 KOG0146 RNA-binding protein ET 96.4 0.0031 6.7E-08 69.8 4.5 69 568-636 283-359 (371)
104 smart00360 RRM RNA recognition 96.4 0.0043 9.3E-08 50.5 4.3 59 660-718 1-63 (71)
105 KOG0533 RRM motif-containing p 96.4 0.0048 1E-07 67.8 5.9 67 571-637 84-157 (243)
106 KOG4454 RNA binding protein (R 96.4 0.0016 3.5E-08 70.5 1.9 65 568-632 7-75 (267)
107 KOG0124 Polypyrimidine tract-b 96.3 0.0066 1.4E-07 69.4 6.0 63 568-630 208-276 (544)
108 KOG2193 IGF-II mRNA-binding pr 96.2 0.003 6.6E-08 73.1 3.1 138 571-719 2-145 (584)
109 KOG0129 Predicted RNA-binding 96.2 0.24 5.3E-06 59.3 18.5 152 554-709 243-429 (520)
110 KOG4211 Splicing factor hnRNP- 96.2 0.066 1.4E-06 63.6 13.5 137 571-715 11-167 (510)
111 KOG1830 Wiskott Aldrich syndro 96.2 0.22 4.7E-06 58.5 17.4 15 1116-1130 493-507 (518)
112 KOG0121 Nuclear cap-binding pr 96.0 0.0069 1.5E-07 61.4 4.3 67 653-719 34-104 (153)
113 KOG4206 Spliceosomal protein s 96.0 0.014 3E-07 63.4 6.8 72 566-637 142-219 (221)
114 COG0724 RNA-binding proteins ( 96.0 0.0094 2E-07 59.7 5.2 65 655-719 115-183 (306)
115 PF04059 RRM_2: RNA recognitio 96.0 0.023 5E-07 54.8 7.4 69 572-640 3-87 (97)
116 PLN03120 nucleic acid binding 96.0 0.0095 2E-07 66.1 5.5 64 655-719 4-68 (260)
117 KOG0114 Predicted RNA-binding 95.6 0.016 3.6E-07 57.1 4.6 64 654-717 17-81 (124)
118 KOG0108 mRNA cleavage and poly 95.5 0.016 3.4E-07 68.4 5.0 64 656-719 19-86 (435)
119 KOG1923 Rac1 GTPase effector F 95.4 0.038 8.3E-07 68.2 8.1 17 1116-1132 477-493 (830)
120 KOG4205 RNA-binding protein mu 95.3 0.012 2.6E-07 66.8 3.2 55 569-624 96-156 (311)
121 KOG0128 RNA-binding protein SA 95.1 0.0069 1.5E-07 75.0 0.4 133 558-712 655-796 (881)
122 PRK15319 AIDA autotransporter- 94.8 0.037 8.1E-07 73.4 5.7 6 1047-1052 1763-1768(2039)
123 KOG4672 Uncharacterized conser 94.7 0.15 3.3E-06 59.6 9.8 24 918-941 306-329 (487)
124 PF13893 RRM_5: RNA recognitio 94.7 0.039 8.5E-07 46.3 3.9 45 672-718 1-46 (56)
125 KOG1365 RNA-binding protein Fu 94.4 0.19 4E-06 58.5 9.7 144 575-718 166-349 (508)
126 smart00361 RRM_1 RNA recogniti 94.4 0.045 9.8E-07 48.4 3.7 49 670-718 3-62 (70)
127 KOG1830 Wiskott Aldrich syndro 94.3 0.81 1.8E-05 54.0 14.4 14 597-610 145-158 (518)
128 KOG4661 Hsp27-ERE-TATA-binding 94.2 0.064 1.4E-06 64.3 5.5 65 567-631 402-472 (940)
129 KOG4212 RNA-binding protein hn 94.1 0.081 1.8E-06 62.1 6.0 71 562-632 528-599 (608)
130 KOG4849 mRNA cleavage factor I 94.0 2.4 5.2E-05 49.3 17.0 62 655-716 80-147 (498)
131 KOG0106 Alternative splicing f 94.0 0.036 7.8E-07 60.2 2.7 61 570-632 99-159 (216)
132 KOG1855 Predicted RNA-binding 93.8 0.042 9.1E-07 64.3 3.1 65 569-633 230-313 (484)
133 PF14605 Nup35_RRM_2: Nup53/35 93.8 0.11 2.4E-06 44.8 4.9 49 574-623 5-53 (53)
134 PF08777 RRM_3: RNA binding mo 93.7 0.13 2.8E-06 50.0 5.7 58 571-628 2-59 (105)
135 PLN03121 nucleic acid binding 93.5 0.097 2.1E-06 57.8 5.0 64 655-719 5-69 (243)
136 PF05918 API5: Apoptosis inhib 93.4 0.3 6.4E-06 59.6 9.4 140 55-261 2-141 (556)
137 KOG2416 Acinus (induces apopto 93.3 0.059 1.3E-06 65.1 3.2 70 568-638 442-520 (718)
138 KOG2314 Translation initiation 93.2 0.088 1.9E-06 63.4 4.4 70 551-632 57-131 (698)
139 KOG1548 Transcription elongati 93.0 0.15 3.3E-06 58.6 5.6 47 584-630 290-338 (382)
140 KOG0130 RNA-binding protein RB 92.8 0.14 3.1E-06 52.7 4.6 63 654-716 71-137 (170)
141 PF15023 DUF4523: Protein of u 92.6 0.18 3.8E-06 52.4 5.0 55 577-632 97-151 (166)
142 KOG4574 RNA-binding protein (c 92.0 0.1 2.2E-06 65.1 3.0 76 564-639 292-373 (1007)
143 PF15449 Retinal: Retinal prot 91.9 3.6 7.8E-05 53.4 15.8 16 1015-1030 1133-1148(1287)
144 KOG0105 Alternative splicing f 90.6 0.37 8E-06 51.9 5.0 62 654-715 5-67 (241)
145 KOG0111 Cyclophilin-type pepti 90.5 0.17 3.6E-06 55.5 2.4 60 654-716 9-75 (298)
146 PLN03213 repressor of silencin 89.5 0.48 1E-05 56.7 5.3 64 654-717 9-74 (759)
147 KOG0307 Vesicle coat complex C 89.2 18 0.0004 47.3 18.8 26 655-680 495-523 (1049)
148 KOG4672 Uncharacterized conser 88.9 2.1 4.6E-05 50.5 9.8 10 1090-1099 474-483 (487)
149 KOG1996 mRNA splicing factor [ 88.7 0.67 1.5E-05 52.7 5.4 50 583-632 299-355 (378)
150 KOG4676 Splicing factor, argin 88.7 0.53 1.1E-05 55.1 4.8 140 572-714 9-210 (479)
151 KOG4210 Nuclear localization s 88.4 0.7 1.5E-05 52.2 5.4 144 569-712 87-246 (285)
152 KOG3152 TBP-binding protein, a 87.9 0.32 7E-06 54.3 2.3 64 569-632 73-154 (278)
153 KOG4208 Nucleolar RNA-binding 87.8 0.78 1.7E-05 50.0 5.1 64 654-719 48-118 (214)
154 KOG0122 Translation initiation 87.6 1 2.3E-05 50.2 6.0 64 654-717 188-255 (270)
155 PF04847 Calcipressin: Calcipr 86.6 1.4 3E-05 47.1 6.1 58 582-639 7-70 (184)
156 PRK15313 autotransport protein 86.4 1.3 2.8E-05 56.8 6.6 8 273-280 114-121 (955)
157 KOG4210 Nuclear localization s 85.7 0.44 9.6E-06 53.7 2.0 69 570-639 185-263 (285)
158 KOG4307 RNA binding protein RB 84.9 24 0.00053 44.6 15.9 31 689-719 36-66 (944)
159 KOG0113 U1 small nuclear ribon 84.7 1.3 2.8E-05 50.6 5.0 66 654-719 100-169 (335)
160 KOG1984 Vesicle coat complex C 84.4 85 0.0018 41.0 20.4 14 1106-1119 398-411 (1007)
161 KOG2202 U2 snRNP splicing fact 83.5 0.53 1.2E-05 52.5 1.4 46 585-630 83-134 (260)
162 KOG0151 Predicted splicing reg 83.0 1.1 2.4E-05 55.6 3.9 65 654-718 173-244 (877)
163 PRK15313 autotransport protein 82.2 2 4.3E-05 55.2 5.8 7 570-576 183-189 (955)
164 KOG4307 RNA binding protein RB 80.2 4.6 9.9E-05 50.5 7.5 71 569-639 865-943 (944)
165 KOG4849 mRNA cleavage factor I 79.5 15 0.00033 43.1 10.9 57 573-629 83-147 (498)
166 KOG4660 Protein Mei2, essentia 78.8 2.4 5.3E-05 51.5 4.7 67 652-719 72-138 (549)
167 KOG0119 Splicing factor 1/bran 78.1 50 0.0011 40.6 14.9 17 700-716 214-230 (554)
168 PF03276 Gag_spuma: Spumavirus 78.1 9.9 0.00021 46.7 9.3 6 1065-1070 295-300 (582)
169 KOG0226 RNA-binding proteins [ 76.9 3.4 7.4E-05 46.6 4.8 151 568-719 94-258 (290)
170 KOG0566 Inositol-1,4,5-triphos 76.8 22 0.00047 46.3 12.1 48 189-236 94-157 (1080)
171 PRK09752 adhesin; Provisional 76.0 2.5 5.3E-05 55.5 3.9 11 122-132 50-60 (1250)
172 PF05172 Nup35_RRM: Nup53/35/4 75.9 5.2 0.00011 39.2 5.3 47 578-625 14-73 (100)
173 PF07174 FAP: Fibronectin-atta 75.5 12 0.00027 42.6 8.6 19 1013-1032 127-145 (297)
174 KOG1922 Rho GTPase effector BN 74.0 17 0.00036 46.4 10.4 21 1116-1136 504-524 (833)
175 PRK09752 adhesin; Provisional 73.6 3.2 6.9E-05 54.5 4.1 8 655-662 701-708 (1250)
176 PF03467 Smg4_UPF3: Smg-4/UPF3 73.5 4 8.7E-05 43.2 4.2 62 569-630 6-79 (176)
177 PF11608 Limkain-b1: Limkain b 72.8 9 0.0002 37.2 5.9 57 572-632 4-65 (90)
178 KOG0115 RNA-binding protein p5 72.2 3.6 7.9E-05 46.3 3.6 59 568-626 29-92 (275)
179 KOG0566 Inositol-1,4,5-triphos 71.9 22 0.00047 46.3 10.4 47 192-238 89-136 (1080)
180 KOG4462 WASP-interacting prote 71.0 1.2E+02 0.0027 36.1 15.3 10 669-678 31-40 (437)
181 KOG1984 Vesicle coat complex C 70.2 2.3E+02 0.0049 37.5 18.4 9 925-933 136-144 (1007)
182 KOG0307 Vesicle coat complex C 69.8 94 0.002 41.3 15.4 8 1033-1040 956-963 (1049)
183 KOG0125 Ataxin 2-binding prote 69.3 6 0.00013 46.0 4.6 65 655-719 96-162 (376)
184 KOG0116 RasGAP SH3 binding pro 68.1 6 0.00013 47.3 4.5 57 655-711 288-348 (419)
185 KOG2591 c-Mpl binding protein, 67.7 11 0.00024 46.4 6.5 78 557-635 162-249 (684)
186 KOG2893 Zn finger protein [Gen 67.7 48 0.001 37.5 10.8 9 1122-1130 314-322 (341)
187 KOG4590 Signal transduction pr 66.9 15 0.00032 44.0 7.3 20 1110-1129 328-349 (409)
188 PRK14950 DNA polymerase III su 66.8 21 0.00046 44.0 8.9 10 95-104 52-61 (585)
189 KOG1925 Rac1 GTPase effector F 66.7 11 0.00023 46.1 6.0 19 1004-1022 280-298 (817)
190 KOG0119 Splicing factor 1/bran 66.2 79 0.0017 39.0 12.9 21 697-717 208-228 (554)
191 KOG1985 Vesicle coat complex C 65.6 51 0.0011 42.6 11.7 17 1035-1051 244-260 (887)
192 KOG0391 SNF2 family DNA-depend 64.9 40 0.00087 45.2 10.7 18 101-118 1187-1204(1958)
193 PF04059 RRM_2: RNA recognitio 62.8 18 0.00038 35.5 5.7 66 657-723 3-75 (97)
194 PF05518 Totivirus_coat: Totiv 62.4 85 0.0018 40.4 12.8 13 853-865 627-639 (759)
195 KOG0115 RNA-binding protein p5 60.8 20 0.00043 40.7 6.5 82 618-715 6-94 (275)
196 KOG0153 Predicted RNA-binding 60.8 11 0.00024 44.1 4.7 59 652-713 225-284 (377)
197 KOG0391 SNF2 family DNA-depend 59.8 1.4E+02 0.0031 40.6 14.1 20 199-218 1085-1104(1958)
198 KOG1922 Rho GTPase effector BN 59.7 20 0.00043 45.8 7.1 14 588-601 116-129 (833)
199 KOG0149 Predicted RNA-binding 59.4 11 0.00025 42.1 4.3 64 652-715 9-76 (247)
200 COG5175 MOT2 Transcriptional r 58.2 13 0.00029 43.4 4.7 62 570-631 114-190 (480)
201 PHA03378 EBNA-3B; Provisional 56.9 2.3E+02 0.0051 36.5 14.8 7 1092-1098 944-950 (991)
202 KOG0162 Myosin class I heavy c 55.1 1.2E+02 0.0026 39.2 12.1 50 570-623 579-635 (1106)
203 KOG2391 Vacuolar sorting prote 54.4 27 0.00058 41.0 6.3 45 1088-1132 311-358 (365)
204 PF05308 Mito_fiss_reg: Mitoch 53.5 30 0.00064 39.1 6.4 6 820-825 59-64 (253)
205 KOG0129 Predicted RNA-binding 52.5 31 0.00066 42.3 6.6 110 554-685 351-473 (520)
206 KOG0559 Dihydrolipoamide succi 50.1 25 0.00053 41.7 5.2 30 1003-1032 228-257 (457)
207 KOG0415 Predicted peptidyl pro 49.9 25 0.00053 41.6 5.1 68 652-719 236-307 (479)
208 PF14605 Nup35_RRM_2: Nup53/35 49.4 21 0.00046 31.0 3.5 52 656-710 2-53 (53)
209 KOG2675 Adenylate cyclase-asso 49.2 14 0.0003 44.5 3.1 23 654-676 37-60 (480)
210 KOG1996 mRNA splicing factor [ 47.6 18 0.0004 41.7 3.6 51 669-719 300-355 (378)
211 KOG2213 Apoptosis inhibitor 5/ 47.4 23 0.0005 42.4 4.5 90 53-161 2-91 (460)
212 PF08675 RNA_bind: RNA binding 45.7 79 0.0017 30.9 6.9 62 572-635 10-71 (87)
213 PF05518 Totivirus_coat: Totiv 45.7 2E+02 0.0044 37.2 12.3 17 542-558 280-296 (759)
214 KOG1985 Vesicle coat complex C 45.6 4.7E+02 0.01 34.6 15.3 10 1040-1049 228-237 (887)
215 PF01690 PLRV_ORF5: Potato lea 44.8 17 0.00036 44.1 2.9 6 1081-1086 93-98 (465)
216 PLN02983 biotin carboxyl carri 44.7 65 0.0014 37.0 7.2 27 1011-1037 219-245 (274)
217 PLN00131 hypothetical protein; 44.7 42 0.0009 35.9 5.4 55 5-60 89-147 (218)
218 PF08777 RRM_3: RNA binding mo 43.4 44 0.00096 32.8 5.1 58 656-716 2-60 (105)
219 KOG2236 Uncharacterized conser 42.4 1.5E+02 0.0033 36.4 10.0 14 382-395 82-95 (483)
220 KOG4462 WASP-interacting prote 42.3 5.3E+02 0.012 31.2 14.0 6 1064-1069 412-417 (437)
221 KOG4454 RNA binding protein (R 41.8 13 0.00028 41.6 1.3 64 652-719 6-75 (267)
222 KOG4209 Splicing factor RNPS1, 41.6 26 0.00056 38.9 3.6 64 653-717 99-166 (231)
223 KOG2546 Abl interactor ABI-1, 39.7 3.2E+02 0.0069 33.6 12.0 17 762-779 192-208 (483)
224 KOG2068 MOT2 transcription fac 39.1 21 0.00045 41.7 2.4 60 571-630 78-149 (327)
225 PF04625 DEC-1_N: DEC-1 protei 38.1 64 0.0014 37.9 6.0 12 765-776 5-16 (407)
226 KOG2202 U2 snRNP splicing fact 37.8 19 0.00041 40.8 1.8 50 670-719 83-136 (260)
227 KOG0260 RNA polymerase II, lar 37.4 1.2E+03 0.026 32.5 17.2 27 133-159 604-631 (1605)
228 KOG2891 Surface glycoprotein [ 37.0 9.3 0.0002 43.6 -0.7 50 582-631 173-247 (445)
229 PRK14948 DNA polymerase III su 36.9 1E+02 0.0023 38.8 8.1 19 86-104 41-61 (620)
230 KOG1995 Conserved Zn-finger pr 36.8 47 0.001 39.2 4.8 66 567-632 63-142 (351)
231 KOG0686 COP9 signalosome, subu 35.7 16 0.00035 43.8 1.0 109 37-161 111-243 (466)
232 KOG0162 Myosin class I heavy c 35.3 4.1E+02 0.0088 34.8 12.4 22 86-108 127-148 (1106)
233 KOG2236 Uncharacterized conser 33.8 1.1E+02 0.0023 37.7 7.1 13 587-599 247-259 (483)
234 KOG0260 RNA polymerase II, lar 33.7 1.4E+03 0.03 32.0 16.9 9 695-703 1333-1341(1605)
235 KOG1855 Predicted RNA-binding 33.3 55 0.0012 39.7 4.7 68 654-721 230-314 (484)
236 PLN02805 D-lactate dehydrogena 33.3 81 0.0018 39.2 6.3 77 563-639 257-346 (555)
237 KOG4410 5-formyltetrahydrofola 32.8 67 0.0015 37.2 5.1 51 559-616 326-377 (396)
238 COG5175 MOT2 Transcriptional r 31.0 54 0.0012 38.7 4.0 65 652-716 111-188 (480)
239 PRK07764 DNA polymerase III su 30.1 2.3E+02 0.0049 37.2 9.6 18 86-103 40-59 (824)
240 PF04625 DEC-1_N: DEC-1 protei 28.9 1.1E+02 0.0023 36.2 5.8 13 1013-1025 190-202 (407)
241 PF15449 Retinal: Retinal prot 28.7 2.4E+02 0.0052 38.0 9.3 23 871-894 1007-1029(1287)
242 KOG1925 Rac1 GTPase effector F 28.4 64 0.0014 39.8 4.2 15 1118-1132 390-404 (817)
243 KOG4661 Hsp27-ERE-TATA-binding 27.8 84 0.0018 39.3 5.0 63 653-715 403-469 (940)
244 PF02375 JmjN: jmjN domain; I 27.7 31 0.00068 28.2 1.1 21 1090-1110 8-32 (34)
245 PRK14954 DNA polymerase III su 26.3 2.2E+02 0.0048 36.1 8.4 11 1008-1018 461-471 (620)
246 PF10567 Nab6_mRNP_bdg: RNA-re 25.2 79 0.0017 36.8 4.0 147 569-717 14-215 (309)
247 PF08952 DUF1866: Domain of un 25.0 1.6E+02 0.0035 31.2 5.9 46 584-632 50-95 (146)
248 PRK07764 DNA polymerase III su 23.7 6E+02 0.013 33.5 11.7 15 58-72 5-21 (824)
249 KOG3837 Uncharacterized conser 23.7 4.2E+02 0.0092 32.6 9.5 11 1116-1126 390-400 (523)
250 KOG4207 Predicted splicing fac 23.4 88 0.0019 35.1 3.8 63 655-717 13-79 (256)
251 KOG0682 Ammonia permease [Inor 23.3 41 0.00088 41.3 1.4 56 147-216 291-346 (500)
252 PRK12270 kgd alpha-ketoglutara 23.1 2.7E+02 0.006 37.5 8.4 8 1091-1098 238-245 (1228)
253 PF01213 CAP_N: Adenylate cycl 22.8 28 0.00061 40.3 0.0 15 703-717 110-124 (312)
254 PLN02983 biotin carboxyl carri 22.7 1.5E+02 0.0034 34.1 5.6 6 1013-1018 204-209 (274)
255 KOG4676 Splicing factor, argin 22.7 18 0.00038 43.2 -1.6 70 557-626 138-209 (479)
256 KOG0533 RRM motif-containing p 22.1 1.2E+02 0.0026 34.4 4.6 63 655-717 83-148 (243)
257 PF03154 Atrophin-1: Atrophin- 22.1 2.1E+03 0.046 29.5 16.1 12 382-393 85-96 (982)
258 TIGR03042 PS_II_psbQ_bact phot 21.9 2.8E+02 0.0061 29.3 6.9 55 37-91 27-89 (142)
259 PF10309 DUF2414: Protein of u 21.5 3.3E+02 0.0072 25.1 6.4 52 572-626 7-62 (62)
260 PRK12270 kgd alpha-ketoglutara 21.0 3.2E+02 0.0069 37.0 8.4 7 1092-1098 172-178 (1228)
261 PF07576 BRAP2: BRCA1-associat 20.1 3.4E+02 0.0074 27.3 6.8 59 573-631 16-79 (110)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=3.8e-18 Score=185.34 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=119.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
+..+||||||+.+++|+||+++|++||+|.+|++.+ .||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467999999999999999999999999999999853 5699999999999999999999998876 788876
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 639 ~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
+... ....+.||||+++..+..++|...|..++....+.+. + ...++.++|||++.+||..|++.|+
T Consensus 82 ~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~ 152 (352)
T TIGR01661 82 PSSD---------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN 152 (352)
T ss_pred cccc---------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 6211 1235789999999999999999999987755554442 2 3467899999999999999999999
Q ss_pred hhcc
Q 001097 715 QHRK 718 (1158)
Q Consensus 715 ~~r~ 718 (1158)
++..
T Consensus 153 g~~~ 156 (352)
T TIGR01661 153 GTTP 156 (352)
T ss_pred CCcc
Confidence 8763
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.1e-17 Score=186.86 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=120.0
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
-...++||||||+.+++|+||+++|+.||+|.+|++.. .||||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999853 5699999999999999999999998775 6776
Q ss_pred eeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHH
Q 001097 637 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 637 ~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~ 712 (1158)
++++-. ......|||++++..+++|+|...|.+++.+..+.+. + ...++.++|||++.|||..|++.
T Consensus 184 a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 184 ARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred cccccc---------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 665211 1236689999999999999999999987766555442 2 34457999999999999999999
Q ss_pred Hhhhcc
Q 001097 713 LRQHRK 718 (1158)
Q Consensus 713 l~~~r~ 718 (1158)
|+++..
T Consensus 255 lng~~~ 260 (346)
T TIGR01659 255 LNNVIP 260 (346)
T ss_pred hCCCcc
Confidence 998753
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.73 E-value=1e-16 Score=186.40 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=118.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccC
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 641 (1158)
..++|||+||+.++++++|.+.|++||.|.++.+.. .||||||+|++.++|.+|++.|+|..+. .|......-
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 356899999999999999999999999999999864 6899999999999999999999998765 444332110
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
.... .+......+.|||++++..+++|+|...|..+|.+..+.+. + ...++.+||+|++.++|..|++.|+++..
T Consensus 167 ~~~~--~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 167 KHER--EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred cccc--ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 0100 01123356789999999999999999999987765555442 2 34566899999999999999999999886
Q ss_pred c
Q 001097 719 S 719 (1158)
Q Consensus 719 ~ 719 (1158)
.
T Consensus 245 ~ 245 (562)
T TIGR01628 245 G 245 (562)
T ss_pred c
Confidence 4
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.72 E-value=2.8e-17 Score=191.06 Aligned_cols=191 Identities=16% Similarity=0.175 Sum_probs=137.7
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 641 (1158)
.||||||+.++||++|+++|.+||+|.+|++.+ .+|||||+|.+.+||.+|++.|+++.+. ||.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999953 5689999999999999999999998665 666553321
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d--lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
..+ -....+|||++++..++.++|...|.++|.+..+.+. + ...++.++|+|++.|+|..|++.|++...
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 121 1125689999999999999999999988877666553 2 44688999999999999999999998764
Q ss_pred ccCCCC-CCCCCCCCccccccCCCCCCCCcceEeeec----ccccccccccCCCCcccccc
Q 001097 719 SRSNYL-PPNTGPANAAMSQIDGARSVPAAPIHVDIR----SNRLGNISAGGFGSPHTAPF 774 (1158)
Q Consensus 719 ~rs~~~-~~~~~~~~~~~~~~d~~~~~Ps~~l~i~~p----~~~l~NlA~~~fGei~rf~i 774 (1158)
...... .+......+ .......-.+++.-++| ++.|.. .+..||+|+.+.|
T Consensus 155 ~~~~i~v~~~~~~~~~----~~~~~~~~~~l~V~nl~~~~tee~L~~-~F~~fG~i~~~~i 210 (562)
T TIGR01628 155 NDKEVYVGRFIKKHER----EAAPLKKFTNLYVKNLDPSVNEDKLRE-LFAKFGEITSAAV 210 (562)
T ss_pred cCceEEEecccccccc----ccccccCCCeEEEeCCCCcCCHHHHHH-HHHhcCCEEEEEE
Confidence 411110 000000000 00000111233333566 555555 6778999988777
No 5
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.9e-17 Score=169.28 Aligned_cols=68 Identities=25% Similarity=0.492 Sum_probs=64.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
.++||||||+++|++.|||.+|.+||+|.+||+++ ++|||||||+|.+||.+|+++|+|+.+| |||+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 68999999999999999999999999999999998 9999999999999999999999999998 55544
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=2.4e-16 Score=186.31 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=122.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG 640 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~ 640 (1158)
..|+||||||+.+++|++|+++|++||+|.+|.+. ..||||||+|.+.++|..|++.|+|..+. +|++.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999984 27999999999999999999999998876 56665542
Q ss_pred CC--CCccccc--ccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHH
Q 001097 641 LG--TKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 641 ~g--~rg~~~G--va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~ 712 (1158)
-. .+...+. ......+.||||+++..++.|+|...|..+|.+..+.+. + ...+++.||||++.++|..|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 11 1111111 112346899999999999999999999987766555442 2 45789999999999999999999
Q ss_pred Hhhhccc
Q 001097 713 LRQHRKS 719 (1158)
Q Consensus 713 l~~~r~~ 719 (1158)
||++-.+
T Consensus 266 mNg~elg 272 (612)
T TIGR01645 266 MNLFDLG 272 (612)
T ss_pred hCCCeeC
Confidence 9988644
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.68 E-value=3e-16 Score=180.77 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=115.2
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhc--CCcee----EEEEeecc-C
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDVG-L 641 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~--G~~~~----RI~F~r~~-~ 641 (1158)
||+.||||||+.+++|+||+++|++||+|.++.+.+.||||||+|++.++|.+|++.|+ |..+. +|+|+... +
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 68999999999999999999999999999999999999999999999999999999864 44443 67776432 1
Q ss_pred CCCcccccccccc--cceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCC--CeeeccccCHHHHHHHHHHHhhhc
Q 001097 642 GTKGVINGVAVGS--CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE--GALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 642 g~rg~~~Gva~~~--s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK--~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
...+--++...++ ...|||++++..++.|+|...|..+|.+..+.+ +..+ ..++|||++.++|..|++.|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i--~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVT--FTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEE--EecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 1111000001122 347899999999999999999887665554433 3333 379999999999999999999987
Q ss_pred c
Q 001097 718 K 718 (1158)
Q Consensus 718 ~ 718 (1158)
.
T Consensus 159 i 159 (481)
T TIGR01649 159 I 159 (481)
T ss_pred c
Confidence 4
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=6.4e-16 Score=168.08 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=119.1
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 637 (1158)
.++||||||+.+++++||+.+|++||.|..+.+.. .||||||+|.+.+||..|++.|+|..+. +++|+
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 46899999999999999999999999999888753 5899999999999999999999998652 66776
Q ss_pred eccC--CC----------------Cccc----------------------------------------------------
Q 001097 638 DVGL--GT----------------KGVI---------------------------------------------------- 647 (1158)
Q Consensus 638 r~~~--g~----------------rg~~---------------------------------------------------- 647 (1158)
+... .. ++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 3211 00 0000
Q ss_pred -----cccc--------ccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHH
Q 001097 648 -----NGVA--------VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAM 710 (1158)
Q Consensus 648 -----~Gva--------~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am 710 (1158)
.+.. .+.++.||||+++..++.++|.+-|.++|.+..+.+. ....++.+||+|++.|||..||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 0000 1234479999999999999999999988876666553 2467899999999999999999
Q ss_pred HHHhhhccc
Q 001097 711 AHLRQHRKS 719 (1158)
Q Consensus 711 ~~l~~~r~~ 719 (1158)
+.|+++..+
T Consensus 329 ~~lnG~~~~ 337 (352)
T TIGR01661 329 LSLNGYTLG 337 (352)
T ss_pred HHhCCCEEC
Confidence 999998865
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.65 E-value=1.4e-15 Score=175.40 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=119.9
Q ss_pred cccCceEEeccCCC-ccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 567 FSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~-~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
-.++++||||||.. .+++++|+.+|+.||.|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|.|.+..
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 45789999999998 699999999999999999999876 5799999999999999999999999765 67766321
Q ss_pred C-----------CC---Ccccc----cc----------cccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCC
Q 001097 641 L-----------GT---KGVIN----GV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC 692 (1158)
Q Consensus 641 ~-----------g~---rg~~~----Gv----------a~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlse 692 (1158)
. |. ++..+ +. ...+++.|||+++|..++.|+|..-|..++......+..+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 0 10 11100 00 012678999999999999999998888766522333333333
Q ss_pred ----CCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 693 ----EGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 693 ----K~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
++.++|||++.|||..|+..|+++-..
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~ 462 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLN 462 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccC
Confidence 488999999999999999999997654
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.64 E-value=1.3e-15 Score=171.91 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=115.9
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
...++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|+. |+|..+. +|.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4578999999999999999999999999999999853 58999999999999999996 8998775 34333
Q ss_pred eccC--CCCcc--cccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHH
Q 001097 638 DVGL--GTKGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTA 709 (1158)
Q Consensus 638 r~~~--g~rg~--~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~A 709 (1158)
...- ..+.. ..| ....++.||||+++..++.++|...|..++.+..+.+. + ...++.+||||.+.++|..|
T Consensus 166 ~~~~~~~~~~~~~~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 166 QAEKNRAAKAATHQPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred chhhhhhhhcccccCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 2110 00000 000 01237899999999999999999999887765555442 2 24578999999999999999
Q ss_pred HHHHhhhcc
Q 001097 710 MAHLRQHRK 718 (1158)
Q Consensus 710 m~~l~~~r~ 718 (1158)
++.|+++..
T Consensus 245 ~~~l~g~~i 253 (457)
T TIGR01622 245 LEVMNGFEL 253 (457)
T ss_pred HHhcCCcEE
Confidence 999998653
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.62 E-value=3.2e-15 Score=170.73 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=119.8
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhcc------------CCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRF------------GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~f------------GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~- 632 (1158)
.-...++||||||+.++++++|+++|..| ++|.++++-..+|||||+|++.++|..|+ .|+|..+.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34568999999999999999999999974 57888999889999999999999999999 59997654
Q ss_pred -EEEEeeccCCC-----------Cc---ccccc--------cccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e
Q 001097 633 -RVKFMDVGLGT-----------KG---VINGV--------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T 688 (1158)
Q Consensus 633 -RI~F~r~~~g~-----------rg---~~~Gv--------a~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~ 688 (1158)
.|++.++.--. .. ...+. .....+.||||+++..++.|+|..-|..+|.+..+.+ .
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 329 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK 329 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 55555432000 00 00000 1124689999999999999999999998776655544 2
Q ss_pred c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 689 D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 689 d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+ ...++.+||||.+.++|..|++.|+++..+
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~ 363 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG 363 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 2 457899999999999999999999998766
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=2.9e-15 Score=176.65 Aligned_cols=185 Identities=18% Similarity=0.210 Sum_probs=130.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----cCCceEEEEecCHHHHHHHHHhhcCCcee---EEEEeeccC
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGL 641 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---RI~F~r~~~ 641 (1158)
.++||||||+.+++|+||+++|++||+|.++++. .+||||||+|.+.+||.+|++.|+|..+. .|.+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~--- 134 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI--- 134 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc---
Confidence 5899999999999999999999999999999985 38999999999999999999999997652 111111
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeec-------CCCCCeeeccccCHHHHHHHHHHHh
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-------LSCEGALLMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~d-------lseK~~LpVEF~t~edA~~Am~~l~ 714 (1158)
....+.||||+|+..+++|||+.||.++.. +.+.++. ...++.+||||++.++|..|++.|.
T Consensus 135 ----------S~~~~rLFVgNLP~~~TeeeL~eeFskv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~ 203 (578)
T TIGR01648 135 ----------SVDNCRLFVGGIPKNKKREEILEEFSKVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLM 203 (578)
T ss_pred ----------cccCceeEeecCCcchhhHHHHHHhhcccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhh
Confidence 125789999999999999999999998642 1122211 2457899999999999999998876
Q ss_pred hhcc---ccCCCCCCCCCCCCccccccCCCCCCCCcceEee-ec----ccccccccccCC--CCcccccc
Q 001097 715 QHRK---SRSNYLPPNTGPANAAMSQIDGARSVPAAPIHVD-IR----SNRLGNISAGGF--GSPHTAPF 774 (1158)
Q Consensus 715 ~~r~---~rs~~~~~~~~~~~~~~~~~d~~~~~Ps~~l~i~-~p----~~~l~NlA~~~f--Gei~rf~i 774 (1158)
..+. ++.-...... .. ...+........+|+|+ ++ ++.|.. .+..| |+|++.++
T Consensus 204 ~gki~l~Gr~I~VdwA~--p~---~~~d~~~~~~~k~LfVgNL~~~~tee~L~~-~F~~f~~G~I~rV~~ 267 (578)
T TIGR01648 204 PGRIQLWGHVIAVDWAE--PE---EEVDEDVMAKVKILYVRNLMTTTTEEIIEK-SFSEFKPGKVERVKK 267 (578)
T ss_pred ccceEecCceEEEEeec--cc---ccccccccccccEEEEeCCCCCCCHHHHHH-HHHhcCCCceEEEEe
Confidence 4332 1110000000 00 00010011234556654 44 555666 67788 99999654
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=8.7e-15 Score=167.17 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=118.5
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F 636 (1158)
....++||||||+..+++++|+++|+.||+|..|.+.. .+|||||+|.+.++|..|++.|+|..++ +|++
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999998853 5899999999999999999999999876 6777
Q ss_pred eeccCCCC----------------cccc---cccccccceEEEccCCCcc----------hhHHHHHhhhcccccCCcee
Q 001097 637 MDVGLGTK----------------GVIN---GVAVGSCFHVYVGNIPNQW----------AKDEILHESYKVVYKGPYMV 687 (1158)
Q Consensus 637 ~r~~~g~r----------------g~~~---Gva~~~s~~LwVG~Iss~~----------~kEELfsE~~kag~kgPv~f 687 (1158)
+..+.... +... -+...+++.|||.++.... +.|+|..||.++|.+..+.+
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 65432110 0000 0112378999999996532 34678899998876666554
Q ss_pred e-c------CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 688 T-D------LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 688 ~-d------lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
. . ....+.+||+|++.++|..|++.|+|...+
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~ 490 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN 490 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 2 1 223578999999999999999999997643
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=8.6e-15 Score=165.35 Aligned_cols=152 Identities=19% Similarity=0.280 Sum_probs=118.0
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
+.+++||||||+.+++|++|+++|+.||.|..|.+. ..+|||||+|.+.++|..|++.|+|..+. +|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 347999999999999999999999999999999987 35799999999999999999999997664 78884
Q ss_pred ecc------------------CCC----------------------------------------Ccccc---------c-
Q 001097 638 DVG------------------LGT----------------------------------------KGVIN---------G- 649 (1158)
Q Consensus 638 r~~------------------~g~----------------------------------------rg~~~---------G- 649 (1158)
.-. .|. .|.++ +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 210 000 00000 0
Q ss_pred ---------c----cccccceEEEccCCCcch----------hHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHH
Q 001097 650 ---------V----AVGSCFHVYVGNIPNQWA----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 706 (1158)
Q Consensus 650 ---------v----a~~~s~~LwVG~Iss~~~----------kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA 706 (1158)
+ -..+++.|+|.++-.... +|+|..|+.++|.+..+.+..-...+.+||+|++.++|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A 423 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHH
Confidence 0 002467788888854433 57899999988777666665456779999999999999
Q ss_pred HHHHHHHhhhccc
Q 001097 707 TTAMAHLRQHRKS 719 (1158)
Q Consensus 707 ~~Am~~l~~~r~~ 719 (1158)
..|++.|+|+.-+
T Consensus 424 ~~A~~~lnGr~f~ 436 (457)
T TIGR01622 424 LAAFQALNGRYFG 436 (457)
T ss_pred HHHHHHhcCcccC
Confidence 9999999998754
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.7e-15 Score=168.15 Aligned_cols=133 Identities=23% Similarity=0.371 Sum_probs=111.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe----c--CCceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccC
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF----P--IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGL 641 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~----~--~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~~ 641 (1158)
.-.|.+|||.|+.|+.|+||.-+|++-|+|-.|++- . +||||||.|.+-++|..|++.|++..+.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~-------- 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP-------- 152 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC--------
Confidence 568999999999999999999999999999999973 2 79999999999999999999999976541
Q ss_pred CCCccccccccc-ccceEEEccCCCcchhHHHHHhhhccc--------ccCCceeecCCCCCeeeccccCHHHHHHHHHH
Q 001097 642 GTKGVINGVAVG-SCFHVYVGNIPNQWAKDEILHESYKVV--------YKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 642 g~rg~~~Gva~~-~s~~LwVG~Iss~~~kEELfsE~~kag--------~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~ 712 (1158)
|-.-||++. .+|.|+||+||..|.||||++|+.++. ++.+.. -...|+.+||||+++.-|+.|+.-
T Consensus 153 ---GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d--k~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 153 ---GKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD--KTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred ---CCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc--cccccceEEEEeecchhHHHHHhh
Confidence 223345554 799999999999999999999999987 222221 156789999999999988887544
Q ss_pred H
Q 001097 713 L 713 (1158)
Q Consensus 713 l 713 (1158)
|
T Consensus 228 l 228 (506)
T KOG0117|consen 228 L 228 (506)
T ss_pred c
Confidence 4
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.1e-14 Score=153.42 Aligned_cols=146 Identities=22% Similarity=0.329 Sum_probs=120.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
...=+++||.|.+.++-++|++.|.+||+|.+-++.+ +|||+||-|-+-+||+.|+..|+|..++ |-..+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 3366899999999999999999999999999888754 8999999999999999999999999887 55555
Q ss_pred eccCCCCcccccccc----------cccceEEEccCCCcchhHHHHHhhhcccccCCc-eeecCCCCCeeeccccCHHHH
Q 001097 638 DVGLGTKGVINGVAV----------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEA 706 (1158)
Q Consensus 638 r~~~g~rg~~~Gva~----------~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv-~f~dlseK~~LpVEF~t~edA 706 (1158)
-+.. +-+||..- ..++.+|||+|.+...+|+|-.-|. .+|++ ++..|-+++++||-|+|.|.|
T Consensus 140 TRKp---~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs---~fG~I~EVRvFk~qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 140 TRKP---SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS---PFGPIQEVRVFKDQGYAFVRFETKEAA 213 (321)
T ss_pred ccCc---cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc---cCCcceEEEEecccceEEEEecchhhH
Confidence 4332 12333222 2689999999999777666665555 67777 566889999999999999999
Q ss_pred HHHHHHHhhhccc
Q 001097 707 TTAMAHLRQHRKS 719 (1158)
Q Consensus 707 ~~Am~~l~~~r~~ 719 (1158)
+.|..+||+.-.+
T Consensus 214 ahAIv~mNntei~ 226 (321)
T KOG0148|consen 214 AHAIVQMNNTEIG 226 (321)
T ss_pred HHHHHHhcCceeC
Confidence 9999999998876
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=7e-14 Score=165.16 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=113.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------cCCceEEEEecCHHHHHHHHHhhcCCc--ee----E
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIRNHF--SW----R 633 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~V~~~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~--~~----R 633 (1158)
...++||||||+.++++++|.++|.+|+. +.++.++ ..||||||+|++.+||..|++.|.... +| +
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45799999999999999999999999974 4555554 258999999999999999999887543 23 6
Q ss_pred EEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcc--cccCCceeecCCCCCeeeccccCHHHHHHHHH
Q 001097 634 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKV--VYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 711 (1158)
Q Consensus 634 I~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~ka--g~kgPv~f~dlseK~~LpVEF~t~edA~~Am~ 711 (1158)
|+++.+..... -.....++.||||+++..+++|+|..+|..+ +.+..+.+ .++.+||||++.|||..||+
T Consensus 216 VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~----~rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK----IRDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe----ecCeEEEEeCCHHHHHHHHH
Confidence 77776532111 0011246899999999999999999999987 65554433 25799999999999999999
Q ss_pred HHhhhccc
Q 001097 712 HLRQHRKS 719 (1158)
Q Consensus 712 ~l~~~r~~ 719 (1158)
.|+++..+
T Consensus 288 ~lnG~~i~ 295 (578)
T TIGR01648 288 ELNGKELE 295 (578)
T ss_pred HhCCCEEC
Confidence 99987665
No 18
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=8.8e-13 Score=136.50 Aligned_cols=146 Identities=20% Similarity=0.248 Sum_probs=114.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~ 641 (1158)
.+|.+|||||++++.|.||+.+|-+||+|..|-+.- +..||||+|+|.+||++|+..-+|-..- ||||.+-|-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 478999999999999999999999999999998752 6789999999999999999999887542 999997652
Q ss_pred CC-----------Ccc-ccc-----ccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHH
Q 001097 642 GT-----------KGV-ING-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPE 704 (1158)
Q Consensus 642 g~-----------rg~-~~G-----va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~e 704 (1158)
++ +|- -.| ..-.+-..+.|-+.|++-+-.+|..-|++ -+.+-|.+..-.+.=.|||-+.|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe---aGdvCfadv~rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE---AGDVCFADVQRDGVGVVEYLRKE 161 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh---hCCeeeeeeecccceeeeeeehh
Confidence 11 110 000 01113556889999999899999999996 45666666666678889999999
Q ss_pred HHHHHHHHHhhhc
Q 001097 705 EATTAMAHLRQHR 717 (1158)
Q Consensus 705 dA~~Am~~l~~~r 717 (1158)
|-.-|.+.|.-++
T Consensus 162 DMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 162 DMKYAVRKLDDQK 174 (241)
T ss_pred hHHHHHHhhcccc
Confidence 9888877776544
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.7e-13 Score=151.70 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=123.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 636 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~F 636 (1158)
.=+||||.|+..++|.||+++|++||.+..|.+.+ .+||+||-|...+||.+|+.+|.+.+.. .|+|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 34799999999999999999999999999998854 7899999999999999999999988654 8999
Q ss_pred eeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e--cCCCCCeeeccccCHHHHHHHHHHH
Q 001097 637 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHL 713 (1158)
Q Consensus 637 ~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~--dlseK~~LpVEF~t~edA~~Am~~l 713 (1158)
+|.- |-. +...+.||||-++.+.+++|+-.-|-+||.++++.+ . +..+|+++||-|.+-|-|.+||+.|
T Consensus 114 Ad~E---~er-----~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 114 ADGE---RER-----IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred cchh---hhc-----cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 9751 100 235789999999999999999999999998888865 3 5789999999999999999999999
Q ss_pred hhhc
Q 001097 714 RQHR 717 (1158)
Q Consensus 714 ~~~r 717 (1158)
+|..
T Consensus 186 ng~~ 189 (510)
T KOG0144|consen 186 NGTQ 189 (510)
T ss_pred ccce
Confidence 9954
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1e-11 Score=140.85 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=150.5
Q ss_pred CCCCCCCCCCC--CCCcCCccccc--cCcCCCCCC---CCCCCCCcccccccC---CCCCCCCCCCCCCCcceeeeecCC
Q 001097 491 MPRDLPNPQML--SPAARTPLHFR--NNSFEGRNH---FPGRSSSEGASNALL---SPNHHLPVPYASTTSQIVWYFDED 560 (1158)
Q Consensus 491 ~pr~~~~~~~~--~~~~~~~~d~~--~~~~~~~~~---~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~g~ 560 (1158)
+|||+-.-.+. +-.+-.-.|+| -|.|+|.|. |+--.+-+-+++.+- |-++. -|-
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir----------------~GK 154 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR----------------PGK 154 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc----------------CCC
Confidence 68888766553 22334445555 467888775 554443333444432 21122 122
Q ss_pred cccccccccCceEEeccCCCccCHHHHHHHhhccCC-cceEEEe-------cCCceEEEEecCHHHHHHHHHhh-cCC-c
Q 001097 561 PAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYI-RNH-F 630 (1158)
Q Consensus 561 p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGp-Le~V~~~-------~~rgfAFVeF~~i~DAv~A~~~L-~G~-~ 630 (1158)
+.-.-|--+.|.||||||+-+-+++||.++|.+.|+ +.+|.++ +.||||||+|+|-+-|..|++-| +|+ .
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 333334457899999999999999999999999998 6688886 48999999999999999998765 565 3
Q ss_pred ee----EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHH
Q 001097 631 SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 706 (1158)
Q Consensus 631 ~~----RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA 706 (1158)
+| -|+.+++...-. +-...-.+.|||=|+.-.++.|.|..+|..++.+..+... |+++||-|..-+||
T Consensus 235 lwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~----rDYaFVHf~eR~da 306 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP----RDYAFVHFAEREDA 306 (506)
T ss_pred ecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc----cceeEEeecchHHH
Confidence 45 789998753322 1112248999999999999999999999988777766432 78999999999999
Q ss_pred HHHHHHHhhhccc
Q 001097 707 TTAMAHLRQHRKS 719 (1158)
Q Consensus 707 ~~Am~~l~~~r~~ 719 (1158)
..||+.||++-.+
T Consensus 307 vkAm~~~ngkeld 319 (506)
T KOG0117|consen 307 VKAMKETNGKELD 319 (506)
T ss_pred HHHHHHhcCceec
Confidence 9999999998876
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.6e-11 Score=132.09 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=116.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
--+|.|-+|+.+.|++||+.+|+..|+||+.+..| +-||.||+|.+..||++|+..|+|-++- +|-|+|+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 35899999999999999999999999999999876 4599999999999999999999998764 8999998
Q ss_pred cCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee----ecCCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 640 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 640 ~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f----~dlseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
- -..|. --+|||.++|...+-.||+.-|.-++.+-..++ ...-+|+.-||-|++-+||-.|.+.|||
T Consensus 121 S---s~~Ik------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 121 S---SDSIK------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred C---hhhhc------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 3 22222 357999999998777777776665553333333 1256789999999999999999999999
Q ss_pred hccc
Q 001097 716 HRKS 719 (1158)
Q Consensus 716 ~r~~ 719 (1158)
+...
T Consensus 192 ~~P~ 195 (360)
T KOG0145|consen 192 QKPS 195 (360)
T ss_pred CCCC
Confidence 8754
No 22
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.20 E-value=3e-11 Score=101.62 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=56.8
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
||||||+.+++++||+..|+.||+|..+.+.+ .++||||+|.+.+||..|++.|+|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 79999999999999999999999999999876 5999999999999999999999997654
No 23
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.19 E-value=5.9e-11 Score=118.42 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=63.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
..+++||||||+.+++|+||+++|++||+|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999998852 5899999999999999999999998765 67766
Q ss_pred e
Q 001097 638 D 638 (1158)
Q Consensus 638 r 638 (1158)
.
T Consensus 112 ~ 112 (144)
T PLN03134 112 N 112 (144)
T ss_pred C
Confidence 4
No 24
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=5.6e-09 Score=124.66 Aligned_cols=63 Identities=22% Similarity=0.475 Sum_probs=60.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
.|++||||.|..+++|.||..+|+.||.|++|.+-.+|++|||--.+-.||.+|+..|....+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv 482 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKV 482 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccc
Confidence 489999999999999999999999999999999999999999999999999999999996544
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=2.2e-10 Score=127.55 Aligned_cols=150 Identities=21% Similarity=0.231 Sum_probs=121.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc-
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG- 640 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~- 640 (1158)
-|.+|||+|+-...|+-|+..|..||||.++-+- .-+|||||||+=++-|.-|.+-|+|.-++ -|++.|+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5889999999999999999999999999999872 37999999999999999999999999887 58888874
Q ss_pred CCC-Ccccccccc--cccceEEEccCCCcchhHHHHHhhhcccccCCcee----ecCCCCCeeeccccCHHHHHHHHHHH
Q 001097 641 LGT-KGVINGVAV--GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHL 713 (1158)
Q Consensus 641 ~g~-rg~~~Gva~--~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f----~dlseK~~LpVEF~t~edA~~Am~~l 713 (1158)
+++ +..|+-|.. +.-+.+||..|.+..++++|.+=|.+||.+--+.. +.-.-|++=||||.++.---.|...|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 333 222343332 46789999999999999999999999885544422 24566889999999987666677777
Q ss_pred hhhccc
Q 001097 714 RQHRKS 719 (1158)
Q Consensus 714 ~~~r~~ 719 (1158)
|-.-.|
T Consensus 273 NlFDLG 278 (544)
T KOG0124|consen 273 NLFDLG 278 (544)
T ss_pred chhhcc
Confidence 765544
No 26
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.03 E-value=1e-09 Score=113.84 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=114.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccC
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~ 641 (1158)
..+||||||..-++|+-|-++|..-||+-++.+= ..+|||||||++.+||.=|++.|++-++. +|+|....-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 3589999999999999999999999999999872 27999999999999999999999987776 899998742
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhccccc--CCceee---cCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 642 g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~k--gPv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
+++- .--+-+|+||+.-..+....|-+-|.++|.. .|-.+. ....+.+.++-|++.|.+.+|++.|+++
T Consensus 89 ~~~n------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 89 HQKN------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred cccc------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 2221 1223689999999966666666666666522 111111 2567789999999999999999999998
Q ss_pred ccc
Q 001097 717 RKS 719 (1158)
Q Consensus 717 r~~ 719 (1158)
-..
T Consensus 163 ~l~ 165 (203)
T KOG0131|consen 163 YLC 165 (203)
T ss_pred hhc
Confidence 766
No 27
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=5e-10 Score=119.08 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=109.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCCCCcc
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKGV 646 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g~rg~ 646 (1158)
..+|||+|+..+.+.||+++|..||.|.+|.+.. ||+||+|.|..||.+|+..|+|+.++ .+++++..-|.+|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4689999999999999999999999999999876 88999999999999999999999887 46777643222211
Q ss_pred -ccc----------ccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 647 -ING----------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 647 -~~G----------va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
++| +.....+.|.|=+++.-..--+|..-|..++.. + ..+. ..+.++|||.+.+||..|+.-|++
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~--~~~~-~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-T--YVDA-RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-c--hhhh-hccccceeehhhhhhhhcchhccc
Confidence 222 222356667777777665555666666654444 2 2222 789999999999999999999988
Q ss_pred hccc
Q 001097 716 HRKS 719 (1158)
Q Consensus 716 ~r~~ 719 (1158)
+-+-
T Consensus 156 ~~~~ 159 (216)
T KOG0106|consen 156 KKLN 159 (216)
T ss_pred hhhc
Confidence 6544
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.97 E-value=1.2e-09 Score=93.76 Aligned_cols=60 Identities=30% Similarity=0.496 Sum_probs=54.0
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
|+|+||+.+++++||++.|++||.|+.|.+... ++||||+|.+.+||.+|++.++|..+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 799999999999999999999999999999875 799999999999999999999986553
No 29
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.8e-09 Score=128.53 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=27.7
Q ss_pred ccccceecccccccCccceeeeeecccccccccccCCCCCCCCcccccCCccchhhhccccccCCCCCccccc
Q 001097 1007 QLLQYQWQGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWPAKLDMTKRTDFRHVKSTFTSTPPNKREVC 1079 (1158)
Q Consensus 1007 ~~i~~qWqG~l~kSGAnyCtIl~s~vdsdIC~a~na~sEPaEWPsilD~TlRtdfQhVEsTF~~tPp~rREVr 1079 (1158)
.--++-|....++.-..+|...=+.. ..+.+..-|..+..+|+..+..+++..
T Consensus 625 ~Mrr~nW~kI~p~d~s~~cFWvkv~E--------------------dk~en~dlfakL~~~Fatq~k~~k~~e 677 (1102)
T KOG1924|consen 625 PMRRFNWSKIVPRDLSENCFWVKVNE--------------------DKLENDDLFAKLALKFATQPKVKKEQE 677 (1102)
T ss_pred ccccCCccccCccccCccceeeecch--------------------hhccchHHHHHHHHHhhcccccccccc
Confidence 33456677766766666663222111 223333445666666776555554444
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.3e-09 Score=120.48 Aligned_cols=133 Identities=18% Similarity=0.234 Sum_probs=111.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccCCCCc
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKG 645 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~rg 645 (1158)
..|||| ++|||++|.+.|+++|++.+|++-+ +-|||||+|.+.+||.+|++.|+...+. .||-|.++ |.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~---rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ---RD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc---cC
Confidence 469999 9999999999999999999999855 6799999999999999999999998775 67777552 21
Q ss_pred ccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee--cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 646 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 646 ~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~--dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
-..+||=+.+.+.+.+.|..=|..||.+-.+.+. .-..+++ ||+|++.++|..|+..||+....
T Consensus 76 ---------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 76 ---------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN 141 (369)
T ss_pred ---------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC
Confidence 1119999999999998888888877766666552 2238888 99999999999999999996654
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=1.6e-09 Score=118.62 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=107.6
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccCCCCccccc
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKGVING 649 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~rg~~~G 649 (1158)
+|+||||+..+++.+|+.+|++||++-.--+ .|+|+||.-++-.-|++|++.|.|-++- -|.+--+. +|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI--vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk--sK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI--VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK--SK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee--ecccceEEeecccccHHHHhhcccceecceEEEEEecc--cc-----
Confidence 7999999999999999999999999876555 4699999999999999999999998775 34433331 22
Q ss_pred ccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 650 VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 650 va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.+.+-.|.||||+....-+||-.-|.+.+-.-... ..+++.+|-|+-.+||-.|.++|++.
T Consensus 75 --sk~stkl~vgNis~tctn~ElRa~fe~ygpviecd----ivkdy~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 75 --SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECD----IVKDYAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred --CCCccccccCCCCccccCHHHhhhhcccCCceeee----eecceeEEEEeeccchHHHHhccccc
Confidence 44788999999999999999988888654443333 25799999999999999999998764
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=98.90 E-value=5.3e-09 Score=85.71 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=56.4
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEecCC----ceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK----GFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~r----gfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
+|||+||+.+.+++||++.|.+||++..+.+.+.+ |||||+|.+.++|.+|++.|+|..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 48999999999999999999999999999988755 99999999999999999999996543
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.89 E-value=1.3e-08 Score=101.08 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=89.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee-
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD- 638 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r- 638 (1158)
.+.||||||+.++++++|..+|..||++..|.+.. .||||||+|.+.++|..|++.|+|..+. +|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 79999999999999999999999999998888743 6699999999999999999999988664 555532
Q ss_pred -ccCCCCcc-----------ccccc--ccccceEEEccCCCcchhHHHHHhhhcccccCC
Q 001097 639 -VGLGTKGV-----------INGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 684 (1158)
Q Consensus 639 -~~~g~rg~-----------~~Gva--~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP 684 (1158)
.+...... ..+.. ......+++++.+..+..+++...+...+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVR 254 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccccccee
Confidence 21111111 00000 125889999999999999999999998775533
No 34
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.88 E-value=4.3e-09 Score=114.60 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=83.2
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCC
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 642 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~g 642 (1158)
.++||||||+.+++|+||++.|+.||+|++|++.+ .+|||||+|++.++|..|+. |+|..++ +|...+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~-- 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY-- 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC--
Confidence 68999999999999999999999999999999975 47999999999999999995 9999886 55555421
Q ss_pred CCcccccccccccceEEEccCCC-cchhHHHHHhhhccccc-CC--c-eeecCCCCCeee
Q 001097 643 TKGVINGVAVGSCFHVYVGNIPN-QWAKDEILHESYKVVYK-GP--Y-MVTDLSCEGALL 697 (1158)
Q Consensus 643 ~rg~~~Gva~~~s~~LwVG~Iss-~~~kEELfsE~~kag~k-gP--v-~f~dlseK~~Lp 697 (1158)
.. .-+..+..+ ..-.+++-.. ....++++.||-+-|+. +. + +-+.|.++|.+-
T Consensus 81 ~~-p~~~~~~~~-~~~~~~~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~s 138 (260)
T PLN03120 81 QL-PPEALAPLS-SNSPASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLT 138 (260)
T ss_pred CC-Ccccccccc-cccCCCCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchH
Confidence 00 000000000 0001222211 12357999999876622 11 1 224577777765
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.82 E-value=9e-09 Score=116.00 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=63.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCce------eEEEE
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS------WRVKF 636 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~------~RI~F 636 (1158)
...+|||+||+.+++|+||+++|++||.|+.+.+.+. ||||||+|.+.+||++|++.|+|..+ .+|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3568999999999999999999999999999998753 59999999999999999999999854 37777
Q ss_pred eec
Q 001097 637 MDV 639 (1158)
Q Consensus 637 ~r~ 639 (1158)
++.
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 754
No 36
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.2e-06 Score=101.54 Aligned_cols=112 Identities=9% Similarity=0.067 Sum_probs=75.4
Q ss_pred cCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee------EEEEeeccCCCCccccccccccc
Q 001097 582 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDVGLGTKGVINGVAVGSC 655 (1158)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r~~~g~rg~~~Gva~~~s 655 (1158)
.+.+|=+.+|..-|+ +++++...=-=-|+.|.+. +..-++.+-|.... |-.|+|. |.+...
T Consensus 21 Lt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~--~~W~~~~~~Gal~lVkD~~~rsyFlrl----------~di~~~ 87 (569)
T KOG3671|consen 21 LTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDP--NHWNKTGLCGALCLVKDNAQRSYFLRL----------VDIVNN 87 (569)
T ss_pred cchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCCh--hhhccccCceeEEEeeccccceeeeEE----------eeecCc
Confidence 677888899999999 8888743111114556655 56667777775332 6667765 334456
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeee-ccccCHHHHHHHHHHHhhhc
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALL-MEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~Lp-VEF~t~edA~~Am~~l~~~r 717 (1158)
+.|| +.||...|+-. ....-|..|+.++|.. +.|.+-+||..=+++++.+.
T Consensus 88 rliW---------dqELY~nf~y~--q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 88 RLIW---------DQELYQNFEYR--QPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred eeee---------hHHhhhhceec--cCccceeeeccccceeeecccCHHHHHHHHHHHHHHh
Confidence 7888 67888888853 2333344566666654 99999999999998887643
No 37
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.2e-08 Score=107.75 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=64.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCc----eeEEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF----SWRVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~----~~RI~F~r 638 (1158)
-++.|=|-||+.+++|.||+++|.+||+|..|.+++ .||||||.|.+.+||++|++.|+|.- +.|||+++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 355699999999999999999999999999999975 79999999999999999999999983 33999987
Q ss_pred c
Q 001097 639 V 639 (1158)
Q Consensus 639 ~ 639 (1158)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 7
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=3.9e-08 Score=117.02 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=117.1
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--C-------CceEEEEecCHHHHHHHHHhhcCCcee-
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--I-------KGFALVEYINIIDAIRAREYIRNHFSW- 632 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~--~-------rgfAFVeF~~i~DAv~A~~~L~G~~~~- 632 (1158)
|-+..++++ |||-||.-+.|.++|+..|.++|.|-++.+.- . .|||||+|.+.++|..|++.|||+.+-
T Consensus 509 a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 509 AEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhccccchh-hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 355666666 99999999999999999999999999997743 2 299999999999999999999998774
Q ss_pred ---EEEEeecc-CCCCcccccccc-cccceEEEccCCCcchhHHHHHhhhcccccCCceee---c-CCCCCeeeccccCH
Q 001097 633 ---RVKFMDVG-LGTKGVINGVAV-GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---D-LSCEGALLMEFRTP 703 (1158)
Q Consensus 633 ---RI~F~r~~-~g~rg~~~Gva~-~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~---d-lseK~~LpVEF~t~ 703 (1158)
.++|.... -++.| --+.. ..+..|||=|||=+.++.|+..-|.+||.+-.+++. + ...++..+|||-|+
T Consensus 588 H~l~lk~S~~k~~~~~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 588 HKLELKISENKPASTVG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred ceEEEEeccCccccccc--cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 56665410 11111 00011 246799999999999999999999998866666552 2 23356689999999
Q ss_pred HHHHHHHHHHhh
Q 001097 704 EEATTAMAHLRQ 715 (1158)
Q Consensus 704 edA~~Am~~l~~ 715 (1158)
+||.+||.+|-.
T Consensus 666 ~ea~nA~~al~S 677 (725)
T KOG0110|consen 666 REAKNAFDALGS 677 (725)
T ss_pred HHHHHHHHhhcc
Confidence 999999998863
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.74 E-value=1.9e-08 Score=120.27 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=59.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
..++||||||+.+++++||+.+|++||+|.++.+.+ .||||||+|++.++|.+|++.|+|..+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 357899999999999999999999999999999864 5899999999999999999999998765
No 40
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.70 E-value=1.5e-07 Score=100.47 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=126.0
Q ss_pred cccccCceEEeccCCCccCHHHHHH----HhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRF----QIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~----~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~----R 633 (1158)
..+.+..+|||-||...+-.+||+. +|+.||.|-+|..+. -||=|||.|.++.-|-.|++.|+|.... |
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4456667999999999999999999 999999999999874 8999999999999999999999998665 8
Q ss_pred EEEeecc--CCCC-----------------------cccccc----------------cccccceEEEccCCCcchhHHH
Q 001097 634 VKFMDVG--LGTK-----------------------GVINGV----------------AVGSCFHVYVGNIPNQWAKDEI 672 (1158)
Q Consensus 634 I~F~r~~--~g~r-----------------------g~~~Gv----------------a~~~s~~LwVG~Iss~~~kEEL 672 (1158)
|-|+... +.++ -..+|- ...+++.|++-+||+....|.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 8888432 1111 112231 1347899999999999999988
Q ss_pred HHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhcccc
Q 001097 673 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSR 720 (1158)
Q Consensus 673 fsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~r 720 (1158)
..-+..+.-+..+.+.. .-++.++|||++-..|..|+-+|++-++-+
T Consensus 164 ~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred HHHHhhCcccceeEecc-CCCceeEEecchhhhhHHHhhhhccceecc
Confidence 88888877666666543 357889999999999999999999988554
No 41
>PLN03213 repressor of silencing 3; Provisional
Probab=98.69 E-value=2.9e-08 Score=114.07 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=57.7
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec--CCceEEEEecCH--HHHHHHHHhhcCCce
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINI--IDAIRAREYIRNHFS 631 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i--~DAv~A~~~L~G~~~ 631 (1158)
.-.||||||+.+|+++||+..|..||.|.+|.+.+ .||||||+|... .++.+|+..|+|...
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEW 75 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVW 75 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCee
Confidence 45899999999999999999999999999999977 899999999987 689999999999864
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.2e-08 Score=108.89 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=72.0
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhc
Q 001097 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 627 (1158)
Q Consensus 554 ~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~ 627 (1158)
+|--.+||-|.+ -|=|+||||-|..+.+|+.|+.+|++||+|+.|.+++ ++|||||+|++.+|-..|.+..+
T Consensus 87 ~wdP~~dp~a~g--DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 87 LWDPNNDPNAIG--DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred hcCCCCCCcccC--CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 577888999988 8999999999999999999999999999999999864 79999999999999999999999
Q ss_pred CCcee
Q 001097 628 NHFSW 632 (1158)
Q Consensus 628 G~~~~ 632 (1158)
|..+-
T Consensus 165 G~~Id 169 (335)
T KOG0113|consen 165 GIKID 169 (335)
T ss_pred Cceec
Confidence 98774
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.69 E-value=7.5e-08 Score=79.31 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=56.5
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEecC-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
+|+|++|+.++++++|+..|.+||+|..+.+... +|+|||+|.+.++|..|++.|+|..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4899999999999999999999999999999863 799999999999999999999998643
No 44
>smart00360 RRM RNA recognition motif.
Probab=98.68 E-value=5.7e-08 Score=79.17 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=53.0
Q ss_pred eccCCCccCHHHHHHHhhccCCcceEEEecC------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 575 LGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 575 VGnL~~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
|+||+.+++++||+..|+.||+|+.+.+... +|||||+|.+.++|.+|++.|+|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999998764 579999999999999999999986653
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.8e-08 Score=98.92 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=66.5
Q ss_pred cccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE------ecCCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001097 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1158)
Q Consensus 563 a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---- 632 (1158)
..+-...||.||||||+--++|+.|-++|+++|+|..|.+ ..+=||+||+|-..+||.+|++++.|+++=
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 3455678999999999999999999999999999999997 347899999999999999999999999764
Q ss_pred EEEEe
Q 001097 633 RVKFM 637 (1158)
Q Consensus 633 RI~F~ 637 (1158)
||++-
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 66643
No 46
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=7.1e-08 Score=102.98 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=114.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE-ecCCc------eEEEEecCHHHHHHHHHhhcCCce-------eEE
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKG------FALVEYINIIDAIRAREYIRNHFS-------WRV 634 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~-~~~rg------fAFVeF~~i~DAv~A~~~L~G~~~-------~RI 634 (1158)
+-|+|||..|+.||-..||--+|.+|---|.-.+ +.+|+ +|||.|.+..+|++|+++|+|-+. .||
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4599999999999999999999999977775443 34555 999999999999999999999864 299
Q ss_pred EEeecc--------CCCCcc------------------------------------------------------------
Q 001097 635 KFMDVG--------LGTKGV------------------------------------------------------------ 646 (1158)
Q Consensus 635 ~F~r~~--------~g~rg~------------------------------------------------------------ 646 (1158)
+|+++. .|+-|.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 999543 121000
Q ss_pred ---------cccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 647 ---------INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 647 ---------~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
-.|.....|..|+|.+.+.....|||..=+..+.-+--.++..-..--.+|+||+.+|.|..||-||+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 11112235889999999999999999888886443333333333334567899999999999999999977
Q ss_pred cc
Q 001097 718 KS 719 (1158)
Q Consensus 718 ~~ 719 (1158)
..
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 54
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.68 E-value=4.8e-08 Score=81.68 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=42.0
Q ss_pred HHHHhhccCCcceEEEecCC-ceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 587 IRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 587 L~~~F~~fGpLe~V~~~~~r-gfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
|..+|++||+|++|.+.+.+ ++|||+|.+.+||..|++.|+|..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67899999999999999976 99999999999999999999998764
No 48
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-08 Score=107.80 Aligned_cols=93 Identities=24% Similarity=0.404 Sum_probs=77.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE------ecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
.-|.||||.|...|+|.-|.++|-.||.|.+|.+ .+-||||||+|+..+||.+|++.|++..++ ||.|++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3589999999999999999999999999999987 248999999999999999999999999876 999998
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhh
Q 001097 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESY 677 (1158)
Q Consensus 639 ~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~ 677 (1158)
+- | +..++. .+.|++|+-|.-..
T Consensus 89 P~---k-----ikegsq--------kPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 89 PE---K-----IKEGSQ--------KPVWADDDWLKKQQ 111 (298)
T ss_pred Cc---c-----ccCCCC--------CCcccCcHHHHHhc
Confidence 71 1 112233 55667777776554
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=3.9e-08 Score=95.04 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=58.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
++-|||-||+-++|.+|.-++|++||+|++|++=. -||.|||-|+|+.||+.|++.|.|..++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC
Confidence 67799999999999999999999999999999843 8999999999999999999999997644
No 50
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=6.6e-08 Score=105.41 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=61.7
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
-.|.||||||.+..+|++|+..|.+||+|-.|++|+.+|||||-|+.-|-|-+|+-.|+|+.+.
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeC
Confidence 3689999999999999999999999999999999999999999999999999999999999875
No 51
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.61 E-value=1e-07 Score=102.97 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=60.6
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEec---CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEee
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 638 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r 638 (1158)
...|+||||++.+||+||++.|+.||+|++|.+.+ .++||||+|++.++|..|+ .|+|..+. +|...+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEe
Confidence 46799999999999999999999999999999987 4589999999999999998 79999876 555544
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.4e-07 Score=107.43 Aligned_cols=149 Identities=16% Similarity=0.213 Sum_probs=118.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccCCC
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGT 643 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~~g~ 643 (1158)
-+++|.|+..+.++.+|...|..||+|.++.+-+ .++|+||+|.+.++|..|++.|+|+... ++...+.+-+.
T Consensus 168 t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 168 TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred hhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccch
Confidence 4678999999999999999999999999999853 6999999999999999999999999764 23333221100
Q ss_pred ------C-----cccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCCeeeccccCHHHHHHH
Q 001097 644 ------K-----GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTA 709 (1158)
Q Consensus 644 ------r-----g~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~---dlseK~~LpVEF~t~edA~~A 709 (1158)
+ -.+...---...+|||=++....+.|+|+..+..++.+..+.+. ....++..+|+|.+.+||..|
T Consensus 248 e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A 327 (369)
T KOG0123|consen 248 EREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKA 327 (369)
T ss_pred hhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHH
Confidence 0 00000001257899999999999999999999988866665442 378899999999999999999
Q ss_pred HHHHhhhccc
Q 001097 710 MAHLRQHRKS 719 (1158)
Q Consensus 710 m~~l~~~r~~ 719 (1158)
|..|++...+
T Consensus 328 ~~~~n~~~i~ 337 (369)
T KOG0123|consen 328 MTEMNGRLIG 337 (369)
T ss_pred HHhhChhhhc
Confidence 9999998766
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=3.5e-08 Score=112.42 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=67.5
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee-------EEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVK 635 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-------RI~ 635 (1158)
...++||||.|+-.++|.|+++.|.+||-||++.+.+ .||||||-|..-+-|+.|+++|+|+... -|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 5678999999999999999999999999999999976 8999999999999999999999999643 799
Q ss_pred Eeec
Q 001097 636 FMDV 639 (1158)
Q Consensus 636 F~r~ 639 (1158)
|+|.
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 9998
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=2.5e-07 Score=100.53 Aligned_cols=150 Identities=17% Similarity=0.229 Sum_probs=113.8
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 637 (1158)
.-+|||..|+-..|..|||.+|.+||.|-.-++. -.||-+||-|...++|+.|++.|+|+.+- -|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 3589999999999999999999999998755542 28999999999999999999999999763 78998
Q ss_pred e--------------------ccCCC------C---------------------cccccccc-------cccceEEEccC
Q 001097 638 D--------------------VGLGT------K---------------------GVINGVAV-------GSCFHVYVGNI 663 (1158)
Q Consensus 638 r--------------------~~~g~------r---------------------g~~~Gva~-------~~s~~LwVG~I 663 (1158)
. ...|. | +-|.|.+. +.---|+|=+.
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 2 11110 1 11233222 12445888899
Q ss_pred CCcchhHHHHHhhhcccccCCcee-ecCC---CCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 664 PNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 664 ss~~~kEELfsE~~kag~kgPv~f-~dls---eK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
++...+--|..=|.-|+....+++ .|+. .|+..||-.-+-|||+-||+.|||.|.|
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg 346 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 346 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc
Confidence 988766655555555555555544 3554 7899999999999999999999999988
No 55
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.3e-07 Score=113.14 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=10.3
Q ss_pred hHHHhhhccCCchhhhh
Q 001097 1116 IWARLMFILPYSQDICS 1132 (1158)
Q Consensus 1116 ~w~rlLfLlPpSeEic~ 1132 (1158)
|...|..-||+-|.+.+
T Consensus 734 ~iqnLik~lPe~E~l~~ 750 (1102)
T KOG1924|consen 734 MIQNLIKHLPEQEQLNK 750 (1102)
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 55566666676665554
No 56
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=6.7e-08 Score=102.28 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=62.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
-.|-|-||..-.+.+||+.+|++||.|-+|.|- .+||||||-|.+-.||++|+++|||..+- ||.|++=
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 368999999999999999999999999999983 28999999999999999999999998774 6777754
No 57
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=5.5e-08 Score=117.87 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=120.4
Q ss_pred cccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCceeEEEEeec
Q 001097 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDV 639 (1158)
Q Consensus 565 dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~ 639 (1158)
|=+-+++.|++|||...+++.+|+..|+.||.++.|.|-. .--||||.|.+..-|..|+-.|.|..+..- =.++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-THRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC-cccc
Confidence 3456799999999999999999999999999999999864 356999999999999999999999877621 0112
Q ss_pred cCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCC-CCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 640 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 640 ~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dls-eK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
|+|.- .++++..+|||+..+-.....|..||+- +|++..+++. .+-+++|.|++++-|..||++||+.-+
T Consensus 446 glG~~------kst~ttr~~sgglg~w~p~~~l~r~fd~---fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 446 GLGQP------KSTPTTRLQSGGLGPWSPVSRLNREFDR---FGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccccc------ccccceeeccCCCCCCChHHHHHHHhhc---cCcceeeecccCCcceeeecccCccchhhHHHHhcCcC
Confidence 23320 3678999999999999999999999995 6666555542 356789999999999999999999887
Q ss_pred c
Q 001097 719 S 719 (1158)
Q Consensus 719 ~ 719 (1158)
|
T Consensus 517 G 517 (975)
T KOG0112|consen 517 G 517 (975)
T ss_pred C
Confidence 7
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=3.2e-07 Score=102.15 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=63.7
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c-CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEee
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 638 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~---~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r 638 (1158)
-|.|+|.||+=.-.|-||+..|++||+|-+|-+. | +|||.||-|+|++||.+|+..|.|+.+- +||+-+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4899999999999999999999999999999863 4 9999999999999999999999999885 788874
No 59
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.42 E-value=3.2e-07 Score=109.26 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=60.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE---------ecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF---------FPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~---------~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
-+.|||||||.+.++|..|...|++||||-+|++ .+.|+++||.|.+-.||.+|+++|||.-+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 4789999999999999999999999999999997 358999999999999999999999998776
No 60
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=1.1e-06 Score=102.57 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=118.3
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~ 640 (1158)
.+|+|++|+.+++.++|++.|+.+|||..-.+. ..|||+||-|--.+|+.+|...+.++.+. +++++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999965553 37999999999999999999999997653 67777321
Q ss_pred -----------------CCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee---ecCCCCCeeeccc
Q 001097 641 -----------------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEF 700 (1158)
Q Consensus 641 -----------------~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f---~dlseK~~LpVEF 700 (1158)
++++...---...+--.|.|-+.|=+..+++|..=|..+|.+..+.+ .+..-.+.+||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 11111000011123557999999999999999999999987777755 2444459999999
Q ss_pred cCHHHHHHHHHHHhhhccc
Q 001097 701 RTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 701 ~t~edA~~Am~~l~~~r~~ 719 (1158)
-...||..||+.+|++...
T Consensus 166 k~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKID 184 (678)
T ss_pred eeHHHHHHHHHhccCceec
Confidence 9999999999999998765
No 61
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=8.9e-07 Score=103.70 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee--EEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVK 635 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~ 635 (1158)
.+++.|||=||...|++++|+.+|+.||+|+.|+..+ .+|-.||+|-|++||++|.++|++..+. ||+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4689999999999999999999999999999999888 9999999999999999999999999876 676
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.20 E-value=4.7e-06 Score=97.75 Aligned_cols=146 Identities=24% Similarity=0.353 Sum_probs=100.2
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe-----
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM----- 637 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~----- 637 (1158)
+.||||||-.+.+|++|+..|+.||+|+.|-.-. .+||+|++|.+.+||+.|.+.|+|.-+- -|++.
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3399999999999999999999999999998743 6999999999999999999999994332 23332
Q ss_pred -----------e------cc--CCCCcc-------cccccc--------------c-ccceEE-----Ecc---------
Q 001097 638 -----------D------VG--LGTKGV-------INGVAV--------------G-SCFHVY-----VGN--------- 662 (1158)
Q Consensus 638 -----------r------~~--~g~rg~-------~~Gva~--------------~-~s~~Lw-----VG~--------- 662 (1158)
| .| +|+.|. +-|... + ....+. |.+
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 1 11 222220 111110 0 011111 111
Q ss_pred --CCC--------------------cchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 663 --IPN--------------------QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 663 --Iss--------------------~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
|++ +-++|++..|+.+.++.-- .+.|-.+-++.||-|.+.++|..|...|+|.-
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~h-i~vd~ns~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCH-IFVDKNSAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeE-EEEccCCCceEEEecCcHHHHHHHHHHHhhhh
Confidence 211 2367889999975443322 33566666999999999999999999999843
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=2e-06 Score=93.90 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=59.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
..|+||||-|...-+|+|++.+|..||.||.+++.+ +||+|||-|..--||-.|++.|.|+..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqT 85 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQT 85 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccccc
Confidence 469999999999999999999999999999999975 799999999999999999999999863
No 64
>smart00361 RRM_1 RNA recognition motif.
Probab=98.16 E-value=4.4e-06 Score=73.51 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHhh----ccCCcceEE-E-e-------cCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 584 EAHIRFQID----RFGPLEHFF-F-F-------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 584 e~dL~~~F~----~fGpLe~V~-~-~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
++||++.|+ +||.|.+|. + . ..||||||+|.+.+||.+|++.|+|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 999999985 3 2 15999999999999999999999998654
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=4.2e-06 Score=94.04 Aligned_cols=64 Identities=27% Similarity=0.383 Sum_probs=59.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
....||||+|.+.++|.||+..|.+||+|+++.+...+++|||+|..-+-|+.|.+.+-.+.+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 3679999999999999999999999999999999999999999999999999999988776554
No 66
>PHA03247 large tegument protein UL36; Provisional
Probab=98.13 E-value=4.4e-05 Score=100.77 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=13.5
Q ss_pred ccccccchh-hhhhhhhhhhhhccCCC
Q 001097 169 SSVIRGICS-AVFHNVLDFFISSFDGK 194 (1158)
Q Consensus 169 s~v~~gics-av~~~vltffi~~f~gk 194 (1158)
..|+-|+|+ +.|.+.=.=|+..++-|
T Consensus 1762 ~~~V~~Lrad~~Y~RLPak~~g~i~aK 1788 (3151)
T PHA03247 1762 TNTVLGLRADAHYERLPAKYQGALGAK 1788 (3151)
T ss_pred HHHHHhhhcchhhccCCHHHhchhhHH
Confidence 345566665 35555555555555444
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.01 E-value=7.4e-06 Score=88.44 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=51.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhc
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR 627 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~ 627 (1158)
-++|||+|.=...+++|+.-|++||.|....+. ++|||+||-|+|.+-|.+|++..+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 379999999999999999999999999976653 599999999999999999988643
No 68
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.00 E-value=1e-05 Score=94.28 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=58.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
+.+|||||+.+++|++|..+|+..|+|-++++. ..|||||++|.+.++|..|++.|+|..+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999999999985 38999999999999999999999998654
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.99 E-value=7e-06 Score=90.70 Aligned_cols=68 Identities=24% Similarity=0.407 Sum_probs=59.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~ 637 (1158)
+++-+|.||||.+.-+..||++.|++||++-+-.+. |+||||.|...+||.+|++.|+|+.+- |+.+.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeee
Confidence 467799999999999999999999999998877664 589999999999999999999998653 44443
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.98 E-value=9.6e-06 Score=91.03 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=97.9
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHh----hcCCcee------
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREY----IRNHFSW------ 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~----L~G~~~~------ 632 (1158)
.+|+|+||+|..+++++.|++.|+.||.+....+. +.|||.||.|.+.+--.+++.. |+|+.+=
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999877664 4899999999976654444433 6665432
Q ss_pred EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee----ecCCCCCeeeccccCHHHHHH
Q 001097 633 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATT 708 (1158)
Q Consensus 633 RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f----~dlseK~~LpVEF~t~edA~~ 708 (1158)
|-+..+.+ + -...+.++||+||..+..+++...|..+++...+.+ .....++.-+|.|++-|..-.
T Consensus 85 r~~~~~~~---~-------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 85 REDQTKVG---R-------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred cccccccc---c-------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 22221110 0 115889999999999999999999999886555533 236778889999998775543
Q ss_pred H
Q 001097 709 A 709 (1158)
Q Consensus 709 A 709 (1158)
+
T Consensus 155 v 155 (311)
T KOG4205|consen 155 V 155 (311)
T ss_pred e
Confidence 3
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.96 E-value=5.3e-05 Score=86.79 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=115.6
Q ss_pred cCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee---c
Q 001097 569 ASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD---V 639 (1158)
Q Consensus 569 ~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r---~ 639 (1158)
.++-|-|-||-.. ||.+-|.-+|+-||.+-.|.++. .+--|+|.|-|...|.-|++.|+|..+| ||.|.+ .
T Consensus 296 ~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 296 ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 3688999999877 99999999999999999999876 6789999999999999999999999987 444442 1
Q ss_pred cC-------------------------CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecC-CCC
Q 001097 640 GL-------------------------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-SCE 693 (1158)
Q Consensus 640 ~~-------------------------g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dl-seK 693 (1158)
++ |+|-+-++ --+|..|-..+||..++.|++..=+...+..+- .|.++ .++
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni--~PpsatlHlsnip~svsee~lk~~f~~~g~~vk-afkff~kd~ 452 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI--FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK-AFKFFQKDR 452 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCccccccccc--CCchhheeeccCCcccchhHHHHhhhcCCceEE-eeeecCCCc
Confidence 12 22222221 136888999999999999999887776442211 44444 478
Q ss_pred CeeeccccCHHHHHHHHHHHhhhccc
Q 001097 694 GALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 694 ~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+++++++.|||+.|.--|..+-.|
T Consensus 453 kmal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 453 KMALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred ceeecccCChhHhhhhccccccccCC
Confidence 99999999999999998877766655
No 72
>PHA03247 large tegument protein UL36; Provisional
Probab=97.94 E-value=0.00024 Score=94.24 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=10.0
Q ss_pred cccceecccccccCccce
Q 001097 1008 LLQYQWQGALCKSGVHYC 1025 (1158)
Q Consensus 1008 ~i~~qWqG~l~kSGAnyC 1025 (1158)
.+-.-|-|.+..+.+..-
T Consensus 2958 ~~p~~~~~~~~~~~~~~p 2975 (3151)
T PHA03247 2958 AVPQPWLGALVPGRVAVP 2975 (3151)
T ss_pred CCCCccccccCcccccCc
Confidence 444556666665555443
No 73
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.94 E-value=9.7e-06 Score=95.17 Aligned_cols=142 Identities=17% Similarity=0.166 Sum_probs=109.7
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCceeEEEEee--cc-
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMD--VG- 640 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r--~~- 640 (1158)
.+.+++=-|...+++-||++.|+.+|++++|.+. +.+|-|||||-|.+--..|+ +|.|+++.-+..+. +.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 3556666788889999999999999999999974 48999999999876655555 99999876333321 10
Q ss_pred -----------CCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHH
Q 001097 641 -----------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEE 705 (1158)
Q Consensus 641 -----------~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~ed 705 (1158)
++.+|+ +++-..||||++......+.|..-|..|+.+.-+.. .| ...++.-+|+|.+.|+
T Consensus 258 eknr~a~~s~a~~~k~~-----~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGF-----TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHhcccccccccc-----ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 122221 224333999999999999999999998887776644 23 6789999999999999
Q ss_pred HHHHHHHHhhhc
Q 001097 706 ATTAMAHLRQHR 717 (1158)
Q Consensus 706 A~~Am~~l~~~r 717 (1158)
|..|.+.||+.-
T Consensus 333 ar~a~e~lngfe 344 (549)
T KOG0147|consen 333 ARKALEQLNGFE 344 (549)
T ss_pred HHHHHHHhccce
Confidence 999999999943
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.90 E-value=2.9e-05 Score=93.30 Aligned_cols=148 Identities=17% Similarity=0.160 Sum_probs=107.1
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC-----
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL----- 641 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~~~----- 641 (1158)
..+.||||+-++..++|...|.+||+|..|.+-+.-.-|+|+|.+..||..|++.|+++... +.+-++.++
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~p 465 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDP 465 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCc
Confidence 56889999999999999999999999999954434445999999999999999999998653 222221110
Q ss_pred ---------CCC--------------------c-----ccccccc---cccceEEEccCCCcchhHHHHHhhhcccccCC
Q 001097 642 ---------GTK--------------------G-----VINGVAV---GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 684 (1158)
Q Consensus 642 ---------g~r--------------------g-----~~~Gva~---~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP 684 (1158)
+.+ . .+.-++. ..++ |||-+..=....|.++..|++.+..--
T Consensus 466 ka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS 544 (725)
T KOG0110|consen 466 KADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLS 544 (725)
T ss_pred cccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccchhHHHHHHHhcCeEEE
Confidence 000 0 0010011 1233 999999999999999999998764333
Q ss_pred ceee---c----CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 685 YMVT---D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 685 v~f~---d----lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.+. + .-+.+..||||+++++|.+|++.|++.+.-
T Consensus 545 ~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld 586 (725)
T KOG0110|consen 545 IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD 586 (725)
T ss_pred EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec
Confidence 3221 1 123389999999999999999999976544
No 75
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.80 E-value=3e-05 Score=78.42 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=58.6
Q ss_pred EEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
|+|-++-..++|+||...|.-||+|.++-+- -.+|||+|||+...+|-.|+++|+|..+. .|+|.
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 6899999999999999999999999999862 28999999999999999999999998765 66665
No 76
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=97.77 E-value=7.5e-07 Score=84.52 Aligned_cols=112 Identities=24% Similarity=0.416 Sum_probs=73.8
Q ss_pred ecccccccCccceeeeeecccccccccc-cCCCCCCCCcccccCCccchhhhccccccCCC-CCccccccccc-----CC
Q 001097 1013 WQGALCKSGVHYCTIYAQREESDICKYT-HDISEPAEWPAKLDMTKRTDFRHVKSTFTSTP-PNKREVCRLVP-----SS 1085 (1158)
Q Consensus 1013 WqG~l~kSGAnyCtIl~s~vdsdIC~a~-na~sEPaEWPsilD~TlRtdfQhVEsTF~~tP-p~rREVrRLvp-----ss 1085 (1158)
|+|.+...+...|.+.++-+... |... +.+.++..|+..+++..|.+.+.+.+...... +..+++.-+.. +.
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~ 79 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDS 79 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccC
Confidence 99999999999999998876443 4444 67777799999999999999998876665532 23346665555 34
Q ss_pred CCCcchhhhHHHHHhhcccccceecccchhhHHHhhhccC
Q 001097 1086 PGDHKGFQDFVSYLKQRECAGVIKIPAVKSIWARLMFILP 1125 (1158)
Q Consensus 1086 ~sD~k~fqDFisyLrqkd~AGVIKiPa~~~~w~rlLfLlP 1125 (1158)
..+...|+.|++||.+++++||+++.....-|-+-|||+|
T Consensus 80 ~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 80 NSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4445789999999999999999999987666678899987
No 77
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.72 E-value=0.00053 Score=80.42 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCC
Q 001097 584 EAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNH 629 (1158)
Q Consensus 584 e~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~ 629 (1158)
|.||-..|+++-+=.-|-.|- +.++|=.+|.|++||..=++.++-+
T Consensus 92 dqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 92 DQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred hHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHHH
Confidence 789999999999765555555 8899999999999999888877764
No 78
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.72 E-value=0.00029 Score=83.18 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=111.4
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
+-=.|.|-||+=...+.||.-+|++||.+..|.+-+ =.|||||.|.+.-||..|++.|+|+.+. -|+|+=.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 355799999999999999999999999999999842 3599999999999999999999999764 4666510
Q ss_pred c-----------------------------CCCCcc-------------ccc-------------------------ccc
Q 001097 640 G-----------------------------LGTKGV-------------ING-------------------------VAV 652 (1158)
Q Consensus 640 ~-----------------------------~g~rg~-------------~~G-------------------------va~ 652 (1158)
. -|..+. .+| ...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 0 000000 111 000
Q ss_pred --------------cccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---cCCCCCeeeccccCHHHHHHHHHHH
Q 001097 653 --------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHL 713 (1158)
Q Consensus 653 --------------~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~---dlseK~~LpVEF~t~edA~~Am~~l 713 (1158)
+.-+.|+|-++|=...+|||-..|.+||.+.-..+ + ...+++++||-|.+.++|..+.+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 11378999999999999999999998875544433 2 2678999999999999999887765
No 79
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=8.1e-05 Score=87.92 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=70.5
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 557 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
++..+++-+|---.++++||+|+...+++.++++.+-||+|..|.++. ++||||-||.|.-..-.|+..|+|..
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 488888888888899999999999999999999999999999999753 78999999999999999999999998
Q ss_pred ee
Q 001097 631 SW 632 (1158)
Q Consensus 631 ~~ 632 (1158)
++
T Consensus 356 lg 357 (500)
T KOG0120|consen 356 LG 357 (500)
T ss_pred hc
Confidence 76
No 80
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=97.67 E-value=4.6e-05 Score=92.33 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=23.6
Q ss_pred Cchhhhhhcc------cCCCccceeeEEeccCCcc
Q 001097 1126 YSQDICSMLS------IAPNSSDCLVALVLPKETN 1154 (1158)
Q Consensus 1126 pSeEic~~L~------l~~d~~EcLIalvlPte~~ 1154 (1158)
..++||.+++ +..+++|||+++ +|||..
T Consensus 457 ~~~~V~~Aih~~dLk~L~~~~ve~L~r~-lPTe~E 490 (830)
T KOG1923|consen 457 KAKEVMAAIHPLDLKALSLEPVELLQRI-LPTEAE 490 (830)
T ss_pred chHHHHHHhhhccccccCCcHHHHHHhc-CCchHH
Confidence 5678999777 688999999999 999863
No 81
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.66 E-value=0.004 Score=76.28 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=50.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCc-eeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv-~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
-|+.||||+|+-.+..++|-+=|+. +|.+ .++-+..+.++||=-++-.||..|+..|+-..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~fee---fGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEE---FGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHh---cccceeEeeccCCceeEEEEeehhHHHHHHHHHhccc
Confidence 5999999999999988888877775 4444 34457789999999999999999999998543
No 82
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.62 E-value=6.1e-05 Score=63.45 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=52.8
Q ss_pred EEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 658 VYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 658 LwVG~Iss~~~kEELfsE~~kag~kgPv~f~---dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
||||++|..+++++|..-|..++....+.+. ....++.++|+|++.+||..|++.|+++..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 7999999999999999999987766555442 2556889999999999999999999997654
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.59 E-value=1e-05 Score=84.86 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=60.3
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.+-|--+|||+|+-+.||.||-..|+.||.|.+|-+.| ++||||.-|+|-+--|-|++.|+|-.+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 45566799999999999999999999999999999865 7899999999999999999999998765
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.49 E-value=0.00044 Score=79.56 Aligned_cols=147 Identities=19% Similarity=0.224 Sum_probs=108.7
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCce-EEEEecCHHHHHHHHHhhcCCcee------EEEEee-----
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFSW------RVKFMD----- 638 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgf-AFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r----- 638 (1158)
...|+|+-.-||=+=|-..|++||.+..+..|. .-|| |+|.|.|..-|-.|+-+|||..+. ||.|.-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 457899999999999999999999999988775 7777 999999999999999999999874 888871
Q ss_pred -------------cc--CC----------------------CCccccc-----ccc-c----c--cceEEEccCCCc-ch
Q 001097 639 -------------VG--LG----------------------TKGVING-----VAV-G----S--CFHVYVGNIPNQ-WA 668 (1158)
Q Consensus 639 -------------~~--~g----------------------~rg~~~G-----va~-~----~--s~~LwVG~Iss~-~~ 668 (1158)
+. .| +-+.+.+ .++ + + ++.|.|-+.-.. ++
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 11 12 0011110 111 1 2 467777776665 66
Q ss_pred hHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 669 KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 669 kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.|-||.=|...|..-.+.+ ...-++-++|++-..-.|.-||.||.+++.=
T Consensus 312 ~d~LftlFgvYGdVqRVki-l~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~ 361 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKI-LYNKKDNALIQMSDGQQAQLAMEHLEGHKLY 361 (492)
T ss_pred hhHHHHHHhhhcceEEEEe-eecCCcceeeeecchhHHHHHHHHhhcceec
Confidence 6777776665443333332 4556789999999999999999999998764
No 85
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.42 E-value=0.00024 Score=75.84 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=61.5
Q ss_pred CceEEeccCCCccCHHHHHHHhhcc-CCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRF-GPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~f-GpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r 638 (1158)
..-+||+.++.+.-|.++...|..| |.+..|+..| ++|||||||++.+.|.-|-+.|++=.+. ...|+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3457999999999999999999999 8999998854 7899999999999999999999996554 667776
Q ss_pred cc
Q 001097 639 VG 640 (1158)
Q Consensus 639 ~~ 640 (1158)
++
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 53
No 86
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.42 E-value=0.00034 Score=79.71 Aligned_cols=139 Identities=17% Similarity=0.132 Sum_probs=97.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee--------------E
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------------R 633 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--------------R 633 (1158)
.+|--+-|-+|-.+|+|+||.+..+.||+|--|+.-+-+--|+|||+||+-|+.++..---..+. +
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 45566889999999999999999999999999999998889999999999999987654333221 2
Q ss_pred EEEeeccCCCCcccccccccccceEEEccCCCc--chhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHH
Q 001097 634 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQ--WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 711 (1158)
Q Consensus 634 I~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~--~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~ 711 (1158)
|+ |+| --..++++.|.+-=+-++ ++.|-|..-....++.-.+- +.-..-=-+.|||+++|-|.+||+
T Consensus 109 i~--R~g--------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIv-IfkkngVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 109 IE--RPG--------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIV-IFKKNGVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hc--cCC--------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEE-EEeccceeeEEeechhHHHHHHHh
Confidence 22 111 112346777777666555 44454544455433333331 121122347899999999999999
Q ss_pred HHhhhc
Q 001097 712 HLRQHR 717 (1158)
Q Consensus 712 ~l~~~r 717 (1158)
.||+--
T Consensus 178 alNGAD 183 (494)
T KOG1456|consen 178 ALNGAD 183 (494)
T ss_pred hccccc
Confidence 999854
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.39 E-value=0.00011 Score=79.31 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=57.1
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
..+|-+|||.||+++++|++|+.+|.+|--..-+++.. +---|||+|++|+.|-+||..|||..+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46789999999999999999999999998877777643 444799999999999999999999654
No 88
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.37 E-value=0.0003 Score=70.88 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=58.9
Q ss_pred cccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 647 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 647 ~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.|-+-..++.||||+++...+.|+|...|.+++.+..+.+. + ...++.++|||++.|+|..|++.|+++...
T Consensus 26 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 26 MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred ccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 333334468899999999999999999999987766665442 3 346899999999999999999999887644
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.30 E-value=0.00033 Score=60.25 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=47.7
Q ss_pred EEEccCCCcchhHHHHHhhhcccccCCceeec---CCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 658 VYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 658 LwVG~Iss~~~kEELfsE~~kag~kgPv~f~d---lseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
|||++||+.++.++|...+..++.+..+.+.- ...++.++|||.+.+||.+|+..++++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~ 63 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKE 63 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcE
Confidence 79999999999999999999887655554421 2347999999999999999999988543
No 90
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.23 E-value=0.0004 Score=73.23 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=58.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcce---EEE----ecCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEH---FFF----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~---V~~----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~ 637 (1158)
+-+|+||||.+.+.|.-|-..|+.||.|-+ +.- -.++|||||+|.+.+-+.+|++.|+|+.++ ++.++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 368999999999999999999999999976 221 137899999999999999999999999887 55555
No 91
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00057 Score=77.58 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=73.3
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhc
Q 001097 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 627 (1158)
Q Consensus 554 ~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~ 627 (1158)
+.-.=||----||.+|-|-|||-.|-|-.+.+||+-.|++||+|.+--+.+ +--||||||+|-++.++|.=-|+
T Consensus 223 iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 223 ILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred HHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc
Confidence 344567777789999999999999999999999999999999999887765 34699999999999999999999
Q ss_pred CCcee----EEEEeec
Q 001097 628 NHFSW----RVKFMDV 639 (1158)
Q Consensus 628 G~~~~----RI~F~r~ 639 (1158)
+-.+= .|.|.++
T Consensus 303 NvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 303 NVLIDDRRIHVDFSQS 318 (479)
T ss_pred ceeeccceEEeehhhh
Confidence 96553 4566654
No 92
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.10 E-value=0.00047 Score=72.42 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=54.0
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
.+.||||+.++...|.||+.+|.+++.+-.+= +....-+.|||||+.+.||.-|..+|+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvW-vArnPPGfAFVEFed~RDA~DAvr~LDG~~~ 72 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVW-VARNPPGFAFVEFEDPRDAEDAVRYLDGKDI 72 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEE-EeecCCCceEEeccCcccHHHHHhhcCCccc
Confidence 67899999999999999999999766443332 3557889999999999999999999999874
No 93
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.04 E-value=0.00074 Score=73.37 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=55.9
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.+.+||||+.-++|.++++..|+-||.|..|.+- .++|||||+|.+.+.++.|.+ |+|..+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 5789999999999999999999999999877662 379999999999999999999 9998653
No 94
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.03 E-value=0.00059 Score=79.65 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=50.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CC--ceEEEEecCHHHHHHHHHhh
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IK--GFALVEYINIIDAIRAREYI 626 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~r--gfAFVeF~~i~DAv~A~~~L 626 (1158)
....|||+||+.++++++|++.|..||+|....|.. .+ .||||+|++-..+..|+++=
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 334499999999999999999999999999887753 22 89999999999999888763
No 95
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.03 E-value=0.0038 Score=72.61 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=114.0
Q ss_pred cCCcccccccccCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe-----cCCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 558 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 558 ~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~-~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
+|.++|.| |.+||-||+-++.=.||..+|. +-|.|+-|-++ .+||+|.|||++.|-+..|.+-|+-..+
T Consensus 37 ~gn~~~r~-----R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 37 GGNVAARD-----RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred CCCccccc-----ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 45555554 6799999999999999999995 67899977754 3899999999999999999999876543
Q ss_pred e-------------EEEEeecc-CCCCcc------------------cccccc---------------------------
Q 001097 632 W-------------RVKFMDVG-LGTKGV------------------INGVAV--------------------------- 652 (1158)
Q Consensus 632 ~-------------RI~F~r~~-~g~rg~------------------~~Gva~--------------------------- 652 (1158)
- |-+++|.+ .|..++ +.|+-+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccc
Confidence 2 22233221 111000 111111
Q ss_pred ---------------------cccceEEEccCCCcchhHHHHHhhhcccccCCcee-e--cCCCCCeeeccccCHHHHHH
Q 001097 653 ---------------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATT 708 (1158)
Q Consensus 653 ---------------------~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~--dlseK~~LpVEF~t~edA~~ 708 (1158)
-.+..++|++|-=.+-.+.|..=+.-+++..-+.| + ..-+++.+.+||..+-||.+
T Consensus 192 ~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHH
Confidence 01567789999888888888888888887776666 2 36788899999999999999
Q ss_pred HHHHHhhhcc
Q 001097 709 AMAHLRQHRK 718 (1158)
Q Consensus 709 Am~~l~~~r~ 718 (1158)
|..-|.++-.
T Consensus 272 aIsml~~~g~ 281 (608)
T KOG4212|consen 272 AISMLDRQGL 281 (608)
T ss_pred HHHhhccCCC
Confidence 9998887443
No 96
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.85 E-value=0.0012 Score=72.48 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=54.5
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcc------eEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE------HFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe------~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
-.=.++-|.||++|+.+.|...|.+|=.-- +=+.-..+||.||-|+|+.|+++|++.|+|+-++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 345789999999999999999999996533 3333458999999999999999999999998665
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.002 Score=76.62 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=117.3
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhcc-----------C-CcceEEEecCCceEEEEecCHHHHHHHHHhhcC---
Q 001097 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF-----------G-PLEHFFFFPIKGFALVEYINIIDAIRAREYIRN--- 628 (1158)
Q Consensus 564 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~f-----------G-pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G--- 628 (1158)
++.--..+++|||++...++|...+..|..= | ++.+|.+-..++|||++|+.+.+|.+|+ .++|
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f 247 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIF 247 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhh
Confidence 3444557899999999999999999888754 2 3667777779999999999999999985 3444
Q ss_pred --CceeEEEEeecc--------CC---CCccccccccc--ccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---
Q 001097 629 --HFSWRVKFMDVG--------LG---TKGVINGVAVG--SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--- 689 (1158)
Q Consensus 629 --~~~~RI~F~r~~--------~g---~rg~~~Gva~~--~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d--- 689 (1158)
..++-++=.+-+ ++ ..+..-+-.++ ..+.++||+++-...++++..-++.|+.+..+.. ++
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 433311111111 11 22222222222 4778999999999999999999998887777754 33
Q ss_pred CCCCCeeeccccCHHHHHHHHHHHhhhccccCCC
Q 001097 690 LSCEGALLMEFRTPEEATTAMAHLRQHRKSRSNY 723 (1158)
Q Consensus 690 lseK~~LpVEF~t~edA~~Am~~l~~~r~~rs~~ 723 (1158)
.-.+++++-||-.+-..-+|.++|+|...|.++-
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 4679999999999999999999999999994443
No 98
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.77 E-value=0.0011 Score=81.88 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=68.5
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee------EEEEee
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMD 638 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~r 638 (1158)
-.+++..||||.|++-..-.-|..+|.+||+|+.|.......||+|.|++..-|..|++.|.|..++ |+.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 5678999999999999999999999999999999999889999999999999999999999999876 788874
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=96.73 E-value=0.0029 Score=51.82 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=48.0
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceeec--CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~d--lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
.|||++++..+..++|.+-+..++....+.+.. ...++.++|+|.+.++|..|++.|+++..
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 389999999999999999998766443333221 12358999999999999999999887543
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.63 E-value=0.016 Score=66.27 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=111.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcc--------eEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe--------~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--- 632 (1158)
...++||-+|+.++|-+++.++|.+||=|- .|.+|+ -+|=|++-|-..+--.-|++.|++..+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 355799999999999999999999999874 256775 5789999999999999999999998765
Q ss_pred -EEEEeeccCCCCccccc-----------------------------ccccccceEEEccCCCc-----------chhHH
Q 001097 633 -RVKFMDVGLGTKGVING-----------------------------VAVGSCFHVYVGNIPNQ-----------WAKDE 671 (1158)
Q Consensus 633 -RI~F~r~~~g~rg~~~G-----------------------------va~~~s~~LwVG~Iss~-----------~~kEE 671 (1158)
||+.++-+......+.| ...+..+.|-+-++=.. -.+|+
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 55555333221111111 11234566777766542 24677
Q ss_pred HHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 672 ILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 672 LfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
|..|..++|.+.-+.+-+-...+.+.|-|.+.+||..+.+.|+|.-
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 7788887666666665566788889999999999999999999854
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.60 E-value=0.004 Score=51.27 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=48.5
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceeecC---CCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dl---seK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.|+|++++...+.++|...+..++....+.+..- ..++.++|+|.+.++|..|++.+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 3899999999999999999998654443333221 236899999999999999999998875
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.52 E-value=0.03 Score=64.56 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=112.1
Q ss_pred cCceEEeccCCCc-cCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc----
Q 001097 569 ASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG---- 640 (1158)
Q Consensus 569 ~S~~LWVGnL~~~-vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~r~~---- 640 (1158)
+++-+-|-.|-.+ ..-+.|.-+|=-||-++.|.|.+ -.|.|.||-.|...-++|+.-|+|..+. ++.|.-+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 3566677777766 34466888999999999999987 8899999999999999999999999886 77766332
Q ss_pred ------------------CCCC---ccccccccc-----ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCC
Q 001097 641 ------------------LGTK---GVINGVAVG-----SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEG 694 (1158)
Q Consensus 641 ------------------~g~r---g~~~Gva~~-----~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~ 694 (1158)
.|+| =..-+-|++ +|+.|--=+.|-.++.|+|+.-+..-.-. ++.+..|..|.
T Consensus 366 ~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~ks 444 (494)
T KOG1456|consen 366 SPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLKS 444 (494)
T ss_pred ccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeecccc
Confidence 1111 112233333 79999999999999999998877754444 55554443332
Q ss_pred ----eeeccccCHHHHHHHHHHHhhhccc
Q 001097 695 ----ALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 695 ----~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.=++||++.+||..|+.-||+.-.+
T Consensus 445 erSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 445 ERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred cccccceeeeehHHHHHHHHHHhcccccc
Confidence 2369999999999999999986644
No 103
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.43 E-value=0.0031 Score=69.82 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=61.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe--c----CCceEEEEecCHHHHHHHHHhhcCCcee--EEEE
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--P----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKF 636 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~--~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F 636 (1158)
...|||||=.|+..-.+.||-..|..||-|.+-++| | +|-|.||-|.|+.-|-.|+.+|+|.-++ |+++
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 358999999999999999999999999999987765 2 7789999999999999999999998776 5543
No 104
>smart00360 RRM RNA recognition motif.
Probab=96.42 E-value=0.0043 Score=50.52 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=46.8
Q ss_pred EccCCCcchhHHHHHhhhcccccCCceeec----CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 660 VGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 660 VG~Iss~~~kEELfsE~~kag~kgPv~f~d----lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
|++++..++.++|..-+..++....+.+.. ...++.++|+|.+.++|..|++.|++...
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 688999999999999998777555554432 23367999999999999999999986553
No 105
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.42 E-value=0.0048 Score=67.80 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=57.7
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 637 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~--RI~F~ 637 (1158)
-.|+|.||..+|+++||+++|+.||.+..|.+.. +.|.|-|.|..-+||++|++-++|..+- .++|.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 5699999999999999999999999999998842 6699999999999999999999994321 44444
No 106
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.36 E-value=0.0016 Score=70.48 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=58.7
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.+.++|||||+...|+|+.|+++|-.=||+..|.+-. ...||||+|++.-----|++.|+|-.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 4578999999999999999999999999999999843 4459999999999999999999998865
No 107
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.26 E-value=0.0066 Score=69.43 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=54.8
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec------CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
+.-+.+||.++-+|.+|+||...|+-||+|..-.+++ -|||.|+||.|..---+|+-.|+-..
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFD 276 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD 276 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhh
Confidence 4568999999999999999999999999999888864 58999999999887777777776543
No 108
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.20 E-value=0.003 Score=73.15 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=98.0
Q ss_pred ceEEeccCCCccCHHHHHHHhhcc--CCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee---EEEEeeccCCCCc
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGLGTKG 645 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~f--GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~---RI~F~r~~~g~rg 645 (1158)
++||+|||++.++.+||+..|+-- |-=-.|.+ --|||||++-|-.-|.+|.+.+.|+.-. |++.-.+-...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk-- 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK-- 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH--
Confidence 579999999999999999999754 22223444 3499999999999999999999998533 55544321000
Q ss_pred ccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeee-ccccCHHHHHHHHHHHhhhccc
Q 001097 646 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALL-MEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 646 ~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~Lp-VEF~t~edA~~Am~~l~~~r~~ 719 (1158)
--||.+-|-+|+.+..-|-|-+=....+....++.+....+.... +.|.+-+.+..|+.+|++.-.+
T Consensus 78 -------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 78 -------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred -------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 138889999999986655444444444445555554443333333 8899999999999999997666
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.24 Score=59.27 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=97.5
Q ss_pred eeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE--------ecCCc---eEEEEecCHHH---H
Q 001097 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF--------FPIKG---FALVEYINIID---A 619 (1158)
Q Consensus 554 ~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~--------~~~rg---fAFVeF~~i~D---A 619 (1158)
.|..-.-+---..-.-|++++||.|+.+++|+.|-.-|.+||++--=|= ++++| |+|..|++.+- -
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 4544444445555566999999999999999999999999999865553 56888 99999997653 3
Q ss_pred HHHHHhhcCCceeEEEEeeccCCCC-------------ccccc-ccccccceEEEccCCCcchhHHHHHhhhcccccCCc
Q 001097 620 IRAREYIRNHFSWRVKFMDVGLGTK-------------GVING-VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY 685 (1158)
Q Consensus 620 v~A~~~L~G~~~~RI~F~r~~~g~r-------------g~~~G-va~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv 685 (1158)
+.|+..=.++-...|.-- .++.+ ..+++ ...-+.|.++||+++--..-|||-.-|+- .+|.+
T Consensus 323 l~aC~~~~~~~yf~vss~--~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~--lyGgV 398 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSP--TIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMED--LFGGV 398 (520)
T ss_pred HHHHhhcccceEEEEecC--cccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHH--hcCce
Confidence 444444222221111111 11111 00110 11347999999999999999999999986 77776
Q ss_pred ee--ecCC-----CCCeeeccccCHHHHHHH
Q 001097 686 MV--TDLS-----CEGALLMEFRTPEEATTA 709 (1158)
Q Consensus 686 ~f--~dls-----eK~~LpVEF~t~edA~~A 709 (1158)
-. +|.. .+++.=|=|.+-..=++|
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~A 429 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKA 429 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHH
Confidence 44 3333 345555666655443333
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.15 E-value=0.066 Score=63.57 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=95.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEec----CCceEEEEecCHHHHHHHHH---hhcCCceeEE--------E
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRARE---YIRNHFSWRV--------K 635 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~---~L~G~~~~RI--------~ 635 (1158)
..|=+-.|+=++|++||+..|+-++ |++|.+.+ ..|=|||||.+.+|+..|++ ...|++-..| +
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 3455678899999999999999986 88888865 68999999999999999986 4455543311 1
Q ss_pred E-eeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCC-cee-e--cCCCCCeeeccccCHHHHHHHH
Q 001097 636 F-MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMV-T--DLSCEGALLMEFRTPEEATTAM 710 (1158)
Q Consensus 636 F-~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP-v~f-~--dlseK~~LpVEF~t~edA~~Am 710 (1158)
+ +++ .|-++ ....-.|-.=++|=..+++||+.-|.-.-.+.. +-+ . -....+.++|.|++.|.|-.||
T Consensus 90 ~~~~~-~g~~s------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 90 WVMRP-GGPNS------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccccC-CCCCC------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 1 122 11111 123456777889999999999877754322222 111 1 2567788999999999999997
Q ss_pred HHHhh
Q 001097 711 AHLRQ 715 (1158)
Q Consensus 711 ~~l~~ 715 (1158)
..-|.
T Consensus 163 ~rhre 167 (510)
T KOG4211|consen 163 GRHRE 167 (510)
T ss_pred HHHHH
Confidence 65443
No 111
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=96.15 E-value=0.22 Score=58.51 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=7.9
Q ss_pred hHHHhhhccCCchhh
Q 001097 1116 IWARLMFILPYSQDI 1130 (1158)
Q Consensus 1116 ~w~rlLfLlPpSeEi 1130 (1158)
+-+|+..=+=+||+-
T Consensus 493 LsRRiaveysdseDd 507 (518)
T KOG1830|consen 493 LSRRIAVEYSDSEDD 507 (518)
T ss_pred HHHHHHHHhccCccc
Confidence 455555555555543
No 112
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=96.03 E-value=0.0069 Score=61.44 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=51.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..|+.|||||+|=.+..|+|-.=|.+.+.+-.+.. .| .+.=+.-||||.+.+||..||++|++.|..
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 36999999999999999998877776553333311 11 233366789999999999999999999876
No 113
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.02 E-value=0.014 Score=63.44 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=65.1
Q ss_pred ccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec-CCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001097 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1158)
Q Consensus 566 v~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~L~G~~~~-----RI~F~ 637 (1158)
-..+.+-|++-||+..++...|+.+|+.|.-.+.|++.+ -++.|||+|.+...|-.|+.+|||.++- +|.|+
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 357889999999999999999999999999999999877 8899999999999999999999998764 55554
No 114
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.02 E-value=0.0094 Score=59.69 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=55.6
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.||||+++..+.+|+|...|..++....+.+ .+ ...++.++|+|.+.++|..|++.|++....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~ 183 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE 183 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC
Confidence 599999999999999999999999886655543 23 688999999999999999999999964443
No 115
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.99 E-value=0.023 Score=54.85 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=54.9
Q ss_pred eEEeccCCCccCHHHHHHHhhcc--CCcceEEE------ecCCceEEEEecCHHHHHHHHHhhcCCc--------eeEEE
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRF--GPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHF--------SWRVK 635 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~f--GpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~~L~G~~--------~~RI~ 635 (1158)
+|-|-||++.-|.++|.+++... |..|=|.+ -...|||||+|.+.++|..-.+.++|+. +|.|.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 57789999999999999988765 33332222 2379999999999999999999999984 45788
Q ss_pred Eeecc
Q 001097 636 FMDVG 640 (1158)
Q Consensus 636 F~r~~ 640 (1158)
+|+.|
T Consensus 83 yAriQ 87 (97)
T PF04059_consen 83 YARIQ 87 (97)
T ss_pred hhHhh
Confidence 88763
No 116
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.99 E-value=0.0095 Score=66.11 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=54.4
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+.||||||+..+++++|...|..+|.+..+.+ .+-..++.+||+|++.++|..|+. |++...+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~ 68 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV 68 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC
Confidence 578999999999999999999998877777755 344457899999999999999995 8887665
No 117
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.57 E-value=0.016 Score=57.10 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=55.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-cCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
-++.|||-+.|-.+++||+..-|.+.|.+..+++- .-..++++||=|+...||..|+.||.++-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 48899999999999999999888877766666663 46778999999999999999999999976
No 118
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=95.45 E-value=0.016 Score=68.37 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=57.3
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+.+|||+|+-++++|+|...+..++.+-.+++. ....++++|+||...++|..|++.|++.-.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999877777553 3788999999999999999999999986544
No 119
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.42 E-value=0.038 Score=68.15 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=13.3
Q ss_pred hHHHhhhccCCchhhhh
Q 001097 1116 IWARLMFILPYSQDICS 1132 (1158)
Q Consensus 1116 ~w~rlLfLlPpSeEic~ 1132 (1158)
...-|+-+||..+|+..
T Consensus 477 ~ve~L~r~lPTe~E~kl 493 (830)
T KOG1923|consen 477 PVELLQRILPTEAEVKL 493 (830)
T ss_pred HHHHHHhcCCchHHHHH
Confidence 45567889999999876
No 120
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.30 E-value=0.012 Score=66.79 Aligned_cols=55 Identities=18% Similarity=0.474 Sum_probs=46.0
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEE------ecCCceEEEEecCHHHHHHHHH
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRARE 624 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~ 624 (1158)
.+++++||.|+.+++|.|++..|++||.|..+.+ -+.|||+||.|.+. |+++-+-
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e-~sVdkv~ 156 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE-DSVDKVT 156 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccc-cccceec
Confidence 7899999999999999999999999998886665 25999999999864 4444433
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.05 E-value=0.0069 Score=74.95 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=103.8
Q ss_pred cCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 558 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 558 ~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
|--...-|.+.-.++.+|-||.+...+.||...|..||-++.|.+. +.||+|||+|...++|-+|+...++++.
T Consensus 655 ~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 655 ENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred hccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3344455666667889999999999999999999999999988874 5899999999999999999988877653
Q ss_pred eEEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCc---eeecCCCCCeeeccccCHHHHHH
Q 001097 632 WRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY---MVTDLSCEGALLMEFRTPEEATT 708 (1158)
Q Consensus 632 ~RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv---~f~dlseK~~LpVEF~t~edA~~ 708 (1158)
. -..+.|-|.+-+-+||++..-+.+.+..-.. .....-.++-|.++|.+.-+|-+
T Consensus 735 g----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~ 792 (881)
T KOG0128|consen 735 G----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASR 792 (881)
T ss_pred h----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhh
Confidence 3 2346677888888999998888876633222 22345667888999999988876
Q ss_pred HHHH
Q 001097 709 AMAH 712 (1158)
Q Consensus 709 Am~~ 712 (1158)
+.+.
T Consensus 793 ~~~s 796 (881)
T KOG0128|consen 793 KVAS 796 (881)
T ss_pred hccc
Confidence 6443
No 122
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=94.75 E-value=0.037 Score=73.37 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.6
Q ss_pred CCCccc
Q 001097 1047 AEWPAK 1052 (1158)
Q Consensus 1047 aEWPsi 1052 (1158)
..|..+
T Consensus 1763 s~W~Ri 1768 (2039)
T PRK15319 1763 SVWARF 1768 (2039)
T ss_pred CeEEEE
Confidence 445443
No 123
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=94.70 E-value=0.15 Score=59.58 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCc
Q 001097 918 AAPFIPPSVTPLAQIQGAPMQNYD 941 (1158)
Q Consensus 918 a~Pf~P~s~tPLsQpQgPPaq~~~ 941 (1158)
+.+..|..+++.+++++.+..+..
T Consensus 306 P~~~aP~~~~~ps~~~~a~~~p~~ 329 (487)
T KOG4672|consen 306 PEPDAPLQPIHPSTFAGAAASPTN 329 (487)
T ss_pred CCCCCCcccCCcccccccccccCc
Confidence 334444555555666665444433
No 124
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=94.69 E-value=0.039 Score=46.27 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHhhhcccccCCceeecCCCC-CeeeccccCHHHHHHHHHHHhhhcc
Q 001097 672 ILHESYKVVYKGPYMVTDLSCE-GALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 672 LfsE~~kag~kgPv~f~dlseK-~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
|.+.+.++|.+.. +.....+ +.++|||++.+||..|+++|++...
T Consensus 1 L~~~f~~fG~V~~--i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVKK--IKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp HHHHHTTTS-EEE--EEEETTSTTEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred ChHHhCCcccEEE--EEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3455565444333 3334444 9999999999999999999998653
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.44 E-value=0.19 Score=58.53 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=98.1
Q ss_pred eccCCCccCHHHHHHHhhccC----CcceEEEe-----cCCceEEEEecCHHHHHHHHHhh---cCCcee----------
Q 001097 575 LGSFGPEASEAHIRFQIDRFG----PLEHFFFF-----PIKGFALVEYINIIDAIRAREYI---RNHFSW---------- 632 (1158)
Q Consensus 575 VGnL~~~vte~dL~~~F~~fG----pLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~L---~G~~~~---------- 632 (1158)
.-.|+-++++.|+.+.|..-- -.+.|.|. ++-|=|||.|...+||-.|.+-= -|++-.
T Consensus 166 mRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEv 245 (508)
T KOG1365|consen 166 MRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEV 245 (508)
T ss_pred ecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 356888999999999997432 44566664 26689999999999999997543 343321
Q ss_pred ---EEEEeeccCCC---Ccccccccc------cccceEEEccCCCcchhHHHHHhhhccc----ccCCceeec--CCCCC
Q 001097 633 ---RVKFMDVGLGT---KGVINGVAV------GSCFHVYVGNIPNQWAKDEILHESYKVV----YKGPYMVTD--LSCEG 694 (1158)
Q Consensus 633 ---RI~F~r~~~g~---rg~~~Gva~------~~s~~LwVG~Iss~~~kEELfsE~~kag----~kgPv~f~d--lseK~ 694 (1158)
--+++..+++. -+.+.|+.. +.-.-|-.-|.|=...+|+|++-++-|. ..|-+++.. ....+
T Consensus 246 qqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 246 QQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred HHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 11233222211 111222222 1345677889999999999999888777 334456654 66778
Q ss_pred eeeccccCHHHHHHHHHHHhhhcc
Q 001097 695 ALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 695 ~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
-+||||++.|+|.+||..-+.+.+
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhc
Confidence 999999999999999877665553
No 126
>smart00361 RRM_1 RNA recognition motif.
Probab=94.36 E-value=0.045 Score=48.39 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=37.1
Q ss_pred HHHHHhhh----cccccCCce-e-ec-----CCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 670 DEILHESY----KVVYKGPYM-V-TD-----LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 670 EELfsE~~----kag~kgPv~-f-~d-----lseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
|+|..++. ++|.++.+. + .+ ...++.++|+|++.+||..|+++|+++..
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~ 62 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF 62 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 44555555 888777663 2 33 44688999999999999999999999754
No 127
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=94.30 E-value=0.81 Score=54.05 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=7.1
Q ss_pred cceEEEecCCceEE
Q 001097 597 LEHFFFFPIKGFAL 610 (1158)
Q Consensus 597 Le~V~~~~~rgfAF 610 (1158)
++.+.||.+.+|=|
T Consensus 145 k~gLkfYTdPsyFF 158 (518)
T KOG1830|consen 145 KDGLKFYTDPSYFF 158 (518)
T ss_pred cccceeecCcHHHH
Confidence 34455555555544
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=94.19 E-value=0.064 Score=64.34 Aligned_cols=65 Identities=9% Similarity=0.234 Sum_probs=56.2
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe---c---CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P---IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~---~---~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
.+-++||||..|+.-....||..+|++||++..-.++ + .|-|.||..-.-.||-..++.|.-+.+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 4558999999999999999999999999999876653 2 677999999999999999988876644
No 129
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=94.12 E-value=0.081 Score=62.12 Aligned_cols=71 Identities=14% Similarity=0.008 Sum_probs=61.3
Q ss_pred ccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEE-ecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 562 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 562 ~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~-~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
-|..+....|+++|-||+-+-|=.-|+..|..||.+.-.-+ .+.+.-..|-|...+||++|+..|+|.++-
T Consensus 528 ~a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 528 NAVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred ccccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCccc
Confidence 36677778999999999999999999999999999886554 444444589999999999999999999874
No 130
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.99 E-value=2.4 Score=49.31 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=44.8
Q ss_pred cceEEEccCCCcchhHHHHHhhhccc--ccCCcee----ecCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag--~kgPv~f----~dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
--.+|||+.-=.+++++|+.-+.+.+ .+..++| +...+|+++++-.-+-....+-|+.|-.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 34689999999999999999998877 3444444 35788999998887755555556555433
No 131
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.96 E-value=0.036 Score=60.24 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=53.3
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.+.|-|=++...+...||...|.+||.+..... -++||||+|...+||..|++.|+|..+.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhc
Confidence 356778888888999999999999999954444 7899999999999999999999998754
No 132
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.84 E-value=0.042 Score=64.28 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=59.3
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecC-------------------CceEEEEecCHHHHHHHHHhhcCC
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------------------KGFALVEYINIIDAIRAREYIRNH 629 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~-------------------rgfAFVeF~~i~DAv~A~~~L~G~ 629 (1158)
+++.|-+=||+-+-.-+.|+.+|+.+|.|.+|++-.+ +-+|||||+..+-|++|.+-|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999655 668999999999999999999877
Q ss_pred ceeE
Q 001097 630 FSWR 633 (1158)
Q Consensus 630 ~~~R 633 (1158)
..||
T Consensus 310 ~~wr 313 (484)
T KOG1855|consen 310 QNWR 313 (484)
T ss_pred hhhh
Confidence 7773
No 133
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.79 E-value=0.11 Score=44.81 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=39.4
Q ss_pred EeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHH
Q 001097 574 WLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAR 623 (1158)
Q Consensus 574 WVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~ 623 (1158)
=|-...++-. +++...|..||.|.++.+-...++++|.|++..||+.|+
T Consensus 5 ~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 5 SVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 3444455544 455668999999999998878999999999999999984
No 134
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.71 E-value=0.13 Score=50.03 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=39.6
Q ss_pred ceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcC
Q 001097 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRN 628 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G 628 (1158)
+-|.+-+++..++.++|.+.|..||+|.=|-|.++-.-|||-|.+.++|..|++.+.-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHh
Confidence 3466777999999999999999999999999999999999999999999999988754
No 135
>PLN03121 nucleic acid binding protein; Provisional
Probab=93.49 E-value=0.097 Score=57.85 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=55.1
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...|||||++...+.++|...|..+|.+..+.+ .+-+.+..++|+|++.++|..|+ .|++....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 367999999999999999999998887777755 46666779999999999999997 79998765
No 136
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.44 E-value=0.3 Score=59.59 Aligned_cols=140 Identities=24% Similarity=0.400 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccccceee
Q 001097 55 IRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVALI 134 (1158)
Q Consensus 55 ~r~v~~~y~r~k~~~~~~~~~~~~~leq~y~~li~~srgc~svqri~adliprya~~cptaleaa~kv~i~m~~~~~a~~ 134 (1158)
|..+|+.|.+|-.- +|- .+=+.+|..+|.++-|=..++|+.|-+||||..+=|+--|.|.-+.+|.-
T Consensus 2 ie~lY~~~~~L~~a---~d~---~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLc------- 68 (556)
T PF05918_consen 2 IEKLYENYEILADA---KDK---SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLC------- 68 (556)
T ss_dssp HHHHHHHHHHHHHT---GGG---GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhHhhcC---CCc---ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-------
Confidence 67899999999872 332 45567999999999999999999999999999999999999998887753
Q ss_pred ccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHH
Q 001097 135 NRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVF 214 (1158)
Q Consensus 135 ~rged~dgva~~ta~aci~gl~dic~~a~s~~~~s~v~~gicsav~~~vltffi~~f~gkdi~~~~~~~~~~~~d~~e~~ 214 (1158)
-+||. +.=+.-|-||.+||-.. ++++ ..+-
T Consensus 69 -EDed~-----~iR~~aik~lp~~ck~~---------------------------------------~~~v-----~kva 98 (556)
T PF05918_consen 69 -EDEDV-----QIRKQAIKGLPQLCKDN---------------------------------------PEHV-----SKVA 98 (556)
T ss_dssp -T-SSH-----HHHHHHHHHGGGG--T-----------------------------------------T-H-----HHHH
T ss_pred -hcccH-----HHHHHHHHhHHHHHHhH---------------------------------------HHHH-----hHHH
Confidence 23442 24455688899999652 1111 2456
Q ss_pred HhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCc
Q 001097 215 LGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNP 261 (1158)
Q Consensus 215 ~~lk~~~~~~~~~~~~~l~~~~~l~ll~if~~~p~~~l~acf~l~~s 261 (1158)
++|-|-+.-|+..-++-. --+|+.+|-..||..|.+=|.-+.+
T Consensus 99 DvL~QlL~tdd~~E~~~v----~~sL~~ll~~d~k~tL~~lf~~i~~ 141 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAV----KNSLMSLLKQDPKGTLTGLFSQIES 141 (556)
T ss_dssp HHHHHHTT---HHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHH-
T ss_pred HHHHHHHhcccHHHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 666666655444433322 2477888889999999999998874
No 137
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.29 E-value=0.059 Score=65.05 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=62.6
Q ss_pred ccCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee--------EEEEee
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------RVKFMD 638 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~-~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~--------RI~F~r 638 (1158)
.+|+-|+|-||-.--|...|.++++ ..|-|+.+||...++-+||-|-..+||++-+++|.|- .| .|.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV-~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNV-QWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhcc-ccCCCCCceeEeeecc
Confidence 4588999999999999999999999 6677889999999999999999999999999999994 34 577763
No 138
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.19 E-value=0.088 Score=63.37 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=55.2
Q ss_pred cceeeeecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEe-----cCCceEEEEecCHHHHHHHHHh
Q 001097 551 SQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREY 625 (1158)
Q Consensus 551 s~~~~~~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~ 625 (1158)
.+.|-.+||.|. ||.---+.-+.-|..+|++||++.++.+= .-+||+|+||.+.++|..|++.
T Consensus 57 ~D~vVvv~g~Pv------------V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 57 FDSVVVVDGAPV------------VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred cceEEEECCCcc------------cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 455666888774 33333344567788999999999999873 2689999999999999999999
Q ss_pred hcCCcee
Q 001097 626 IRNHFSW 632 (1158)
Q Consensus 626 L~G~~~~ 632 (1158)
|+|+++-
T Consensus 125 l~G~~ld 131 (698)
T KOG2314|consen 125 LNGKRLD 131 (698)
T ss_pred cccceec
Confidence 9998764
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=92.98 E-value=0.15 Score=58.63 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=43.7
Q ss_pred HHHHHHHhhccCCcceEEEe--cCCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 584 EAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 584 e~dL~~~F~~fGpLe~V~~~--~~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
++||++.=++||++++|.+| .+.|-|-|.|+|.++|..+++.|+|+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 57788889999999999999 599999999999999999999999954
No 140
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=92.77 E-value=0.14 Score=52.67 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=47.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee----ecCCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f----~dlseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.--+|+|-+|......|++-.-|--++.+-.+.. ...--|++++|||+|.++|.+||..||+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch
Confidence 4568999999999999888766554443332211 12456899999999999999999999964
No 141
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.59 E-value=0.18 Score=52.37 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=45.3
Q ss_pred cCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 577 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 577 nL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
|+.+.-.-..+-+.++.||+|++|+. .+|--|.|.|+|+.-|-.|+.+.+-..+.
T Consensus 97 nm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s~~pg 151 (166)
T PF15023_consen 97 NMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQSRAPG 151 (166)
T ss_pred cCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcCCCCC
Confidence 44544444566778899999999986 67899999999999999999999987653
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.04 E-value=0.1 Score=65.08 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=70.5
Q ss_pred ccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001097 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1158)
Q Consensus 564 ~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~------RI~F~ 637 (1158)
-|||..--+.++-|..-+.+-.-|..+|..||.+-+.|..|+-+-|.|+|..++-|+-|.++|+|+.+. ||-|+
T Consensus 292 snv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 292 SNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 488888899999999999999999999999999999999999999999999999999999999999764 88888
Q ss_pred ec
Q 001097 638 DV 639 (1158)
Q Consensus 638 r~ 639 (1158)
+.
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 54
No 143
>PF15449 Retinal: Retinal protein
Probab=91.87 E-value=3.6 Score=53.37 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=11.3
Q ss_pred ccccccCccceeeeee
Q 001097 1015 GALCKSGVHYCTIYAQ 1030 (1158)
Q Consensus 1015 G~l~kSGAnyCtIl~s 1030 (1158)
.+-.|-.-|.|.|+|-
T Consensus 1133 ~~saK~~~Nt~SIFCP 1148 (1287)
T PF15449_consen 1133 AASAKVSGNTCSIFCP 1148 (1287)
T ss_pred cccccccCCccceecc
Confidence 3445666789999993
No 144
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=90.59 E-value=0.37 Score=51.89 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=45.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeec-CCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~d-lseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
.++.|||||.|..+-..||..-|.|++.+..++.+. -..-..+|||||.+-||--|..+-++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdG 67 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDG 67 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccc
Confidence 589999999999887777777777654444443332 11245689999999999999887664
No 145
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.17 Score=55.47 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=43.5
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCce-e---ec---CCCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-V---TD---LSCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~-f---~d---lseK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
.-|.||||+.-..+. |.++|. +|+.+|.+. + .| ..-|+..||||+-.|||++||.+|+.-
T Consensus 9 ~KrtlYVGGladeVt-ekvLha--AFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes 75 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVT-EKVLHA--AFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES 75 (298)
T ss_pred cceeEEeccchHHHH-HHHHHh--ccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence 468999999977765 445543 334555551 1 22 445678999999999999999999984
No 146
>PLN03213 repressor of silencing 3; Provisional
Probab=89.55 E-value=0.48 Score=56.68 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=53.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCH--HHHHHHHHHHhhhc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTP--EEATTAMAHLRQHR 717 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~--edA~~Am~~l~~~r 717 (1158)
....|||||++-.+..|+|..=|..+|.+-.+.+.--..|+.+||||.+. +++..|+..|++..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 45789999999999999999999888877777665334499999999987 67899999998844
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=18 Score=47.32 Aligned_cols=26 Identities=4% Similarity=0.120 Sum_probs=12.8
Q ss_pred cceEEEccCCCcc---hhHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQW---AKDEILHESYKVV 680 (1158)
Q Consensus 655 s~~LwVG~Iss~~---~kEELfsE~~kag 680 (1158)
+++|-+|.+.+.+ .+++.+.|.+..+
T Consensus 495 s~alitgd~~~aV~~cl~~~~~a~AliiA 523 (1049)
T KOG0307|consen 495 SEALITGDFKSAVELCLEANKMADALIIA 523 (1049)
T ss_pred HHHHHhccHHHHHHHHHhhhHHHHHHHHH
Confidence 5566666665532 3344444444433
No 148
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=88.95 E-value=2.1 Score=50.53 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=6.1
Q ss_pred chhhhHHHHH
Q 001097 1090 KGFQDFVSYL 1099 (1158)
Q Consensus 1090 k~fqDFisyL 1099 (1158)
.+|.+|+.-|
T Consensus 474 DaY~~FMkEM 483 (487)
T KOG4672|consen 474 DAYNAFMKEM 483 (487)
T ss_pred HHHHHHHHHH
Confidence 4577776554
No 149
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.69 E-value=0.67 Score=52.69 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=42.1
Q ss_pred CHHHHHHHhhccCCcceEEEecCCce-------EEEEecCHHHHHHHHHhhcCCcee
Q 001097 583 SEAHIRFQIDRFGPLEHFFFFPIKGF-------ALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 583 te~dL~~~F~~fGpLe~V~~~~~rgf-------AFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
-|+++.++-++||.+.+|.+|-..+| -||+|++.+.|+.|+=.|+|...+
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 45667788999999999999765554 599999999999999999997543
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.66 E-value=0.53 Score=55.09 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=90.3
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEec---------CCceEEEEecCHHHHHHHHHhhcCCceeEEEEeecc--
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVG-- 640 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~---------~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~F~r~~-- 640 (1158)
-|-|.||.+++|.+++.-+|+..|.|+.+.+|+ -.-.|||-|.|..-+..|-+.-+-.++-|.-|-.+-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 466899999999999999999999999999997 235799999999988888555444444344433211
Q ss_pred ---------------------CCCCccc---------ccc---cc---------------cccceEEEccCCCcchhHHH
Q 001097 641 ---------------------LGTKGVI---------NGV---AV---------------GSCFHVYVGNIPNQWAKDEI 672 (1158)
Q Consensus 641 ---------------------~g~rg~~---------~Gv---a~---------------~~s~~LwVG~Iss~~~kEEL 672 (1158)
+...|.+ |-+ .+ ..-+.++|+.+.+.|.-.|+
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 0001110 000 00 02577999999999988888
Q ss_pred HHhhhcccccCCceeecCCCCCee---eccccCHHHHHHHHHHHh
Q 001097 673 LHESYKVVYKGPYMVTDLSCEGAL---LMEFRTPEEATTAMAHLR 714 (1158)
Q Consensus 673 fsE~~kag~kgPv~f~dlseK~~L---pVEF~t~edA~~Am~~l~ 714 (1158)
..=+.. +|.++.....++... -+||..-.--..|...+.
T Consensus 169 ~e~f~r---~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~g 210 (479)
T KOG4676|consen 169 GESFER---KGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSHG 210 (479)
T ss_pred hhhhhh---cchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhcc
Confidence 776665 355554332222222 288876655555544433
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.38 E-value=0.7 Score=52.15 Aligned_cols=144 Identities=14% Similarity=0.116 Sum_probs=101.6
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcc-eEEE-----ecCCceEEEEecCHHHHHHHHHhhcCCcee-EEEEeec--
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDV-- 639 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe-~V~~-----~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~-RI~F~r~-- 639 (1158)
..+.+++|++.-++.+.++...|..+|..- .... .+.++|.+|.|...+.+..|.......... +.-+.+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 456789999999999999999999999544 3333 359999999999999999998887764433 1111111
Q ss_pred --cCCCCcccccccccccceEE-EccCCCcchhHHHHHhhhcccccCCceee----cCCCCCeeeccccCHHHHHHHHHH
Q 001097 640 --GLGTKGVINGVAVGSCFHVY-VGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAH 712 (1158)
Q Consensus 640 --~~g~rg~~~Gva~~~s~~Lw-VG~Iss~~~kEELfsE~~kag~kgPv~f~----dlseK~~LpVEF~t~edA~~Am~~ 712 (1158)
++-.+....+...+++..++ ||+.+....+|+|..++...+.+--+.+. ....+..++++|.+..++..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 01011111122234566666 99999999999999777776654444332 356677789999999999888775
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=87.85 E-value=0.32 Score=54.27 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=55.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCCce------------------EEEEecCHHHHHHHHHhhcCCc
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF------------------ALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgf------------------AFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
.+.-+|+++|++...-..|++.|+.||.|..|.+.+..-+ ..|||.+-+.|.+-.+.|+|+-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566899999999999999999999999999999774333 4689999999999999999976
Q ss_pred ee
Q 001097 631 SW 632 (1158)
Q Consensus 631 ~~ 632 (1158)
++
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 43
No 153
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=87.85 E-value=0.78 Score=49.98 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=52.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCc-ee------ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MV------TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv-~f------~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..-.+||+.|+.-.-+-+++.-+..++ |++ ++ ..+.+++++||||++.|.|..|-+-||.+...
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 456789999999998899998888764 443 11 24789999999999999999999999987644
No 154
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=87.59 E-value=1 Score=50.16 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=53.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---cCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~---dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
.++.|-|-+.|-....++|..=|..|+.+-.+-+ . ..-.|+.+||-|++-|||++|.+.|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 6778999999999999999777776664444433 2 36789999999999999999999999976
No 155
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.61 E-value=1.4 Score=47.10 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=43.8
Q ss_pred cCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhc--CCce----eEEEEeec
Q 001097 582 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFS----WRVKFMDV 639 (1158)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~--G~~~----~RI~F~r~ 639 (1158)
...+.|+++|..|+++-+|...+.=+=..|.|.+.++|++|+..|+ |..+ +|+.|++.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4568999999999999999999988889999999999999999999 6644 38888855
No 156
>PRK15313 autotransport protein MisL; Provisional
Probab=86.36 E-value=1.3 Score=56.81 Aligned_cols=8 Identities=38% Similarity=0.492 Sum_probs=2.9
Q ss_pred eeecceee
Q 001097 273 FFSQITSR 280 (1158)
Q Consensus 273 ~l~q~t~~ 280 (1158)
|..-|+-|
T Consensus 114 ~~~~~~~~ 121 (955)
T PRK15313 114 FGNDLTIR 121 (955)
T ss_pred ecCceEEE
Confidence 33333333
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=85.67 E-value=0.44 Score=53.70 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=59.0
Q ss_pred CceEEeccCCCccCHHHHHHHhhccCCcceEEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001097 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~----RI~F~r~ 639 (1158)
..-+.||++.-+++++||...|..+|.|.++++- ..+|||||.|.+..++..|+.. ++..+. +|++.++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3344599999999999999999999999999983 2789999999999999999998 777654 6887754
No 158
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=84.91 E-value=24 Score=44.57 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=25.8
Q ss_pred cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 689 DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 689 dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
...|.+-+||=|-|-|||+.||.-=|.+-+|
T Consensus 36 IGGe~GeaFI~FsTDeDARlaM~kdr~~i~g 66 (944)
T KOG4307|consen 36 IGGEEGEAFIGFSTDEDARLAMTKDRLMIHG 66 (944)
T ss_pred ecccccceEEEecccchhhhhhhhcccceec
Confidence 3457788999999999999999877776655
No 159
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=84.71 E-value=1.3 Score=50.59 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=57.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+-+.|+||.++=.++..+|-.||.+++.+..+.+ .+ .-+++++||||+..-|-..|-++..++.+-
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 8999999999999999999999999887777633 34 678999999999999999999998876543
No 160
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=85 Score=41.03 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=5.5
Q ss_pred cceecccchhhHHH
Q 001097 1106 GVIKIPAVKSIWAR 1119 (1158)
Q Consensus 1106 GVIKiPa~~~~w~r 1119 (1158)
|-+...+.+..|++
T Consensus 398 Gt~dfvatk~Y~~~ 411 (1007)
T KOG1984|consen 398 GTVDFVATKDYCRK 411 (1007)
T ss_pred cccceeeehhhhhc
Confidence 33333333344444
No 161
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=83.52 E-value=0.53 Score=52.50 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=38.7
Q ss_pred HHHHHHhh-ccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 585 AHIRFQID-RFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 585 ~dL~~~F~-~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
+|+..+|+ +||.|+++.+-. -+|=+||.|+..+||+.|+++|+|..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw 134 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW 134 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc
Confidence 45555666 999999997743 57889999999999999999999965
No 162
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=83.03 E-value=1.1 Score=55.64 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=54.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-------ecCCCCCeeeccccCHHHHHHHHHHHhhhcc
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-------TDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-------~dlseK~~LpVEF~t~edA~~Am~~l~~~r~ 718 (1158)
-..+|||||++++++.+.|+-.|..|+.+..+.+ .--.++++.||=|-+-.||-+||+.||++-.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 4789999999999999999998887775444433 1257889999999999999999999999653
No 163
>PRK15313 autotransport protein MisL; Provisional
Probab=82.23 E-value=2 Score=55.17 Aligned_cols=7 Identities=29% Similarity=0.847 Sum_probs=3.0
Q ss_pred CceEEec
Q 001097 570 SKQLWLG 576 (1158)
Q Consensus 570 S~~LWVG 576 (1158)
+++++||
T Consensus 183 ~~~i~~g 189 (955)
T PRK15313 183 SANIYVG 189 (955)
T ss_pred cceEEEc
Confidence 3444444
No 164
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=80.16 E-value=4.6 Score=50.51 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=59.9
Q ss_pred cCc-eEEeccCCCccCHHHHHHHhhccCCcc-eEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee-EEEEeec
Q 001097 569 ASK-QLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDV 639 (1158)
Q Consensus 569 ~S~-~LWVGnL~~~vte~dL~~~F~~fGpLe-~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-RI~F~r~ 639 (1158)
+.+ -|=+-|++-+|+-+||.+.|.-|-.+- +|.+.+ +-|=|.|.|++.++|.+|...|+|+.+. |+-++|.
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344 788999999999999999999999987 566543 5678999999999999999999999887 6655543
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=79.46 E-value=15 Score=43.09 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=41.7
Q ss_pred EEeccCCCccCHHHHHHHhhccCC--cceEEEe------cCCceEEEEecCHHHHHHHHHhhcCC
Q 001097 573 LWLGSFGPEASEAHIRFQIDRFGP--LEHFFFF------PIKGFALVEYINIIDAIRAREYIRNH 629 (1158)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~fGp--Le~V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~ 629 (1158)
+|||||-=-.|++||.++...-|- +-+++|| .++|||+|-.....-.++-++.|.-+
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 799999999999999999887773 3355565 27788888777655555555555543
No 166
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=78.75 E-value=2.4 Score=51.52 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=55.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
..+.+.|||=+++..++.++|+..|.+.|.+-.+.- ....++-.+|||..+-+|.+|.+.||+++..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 346899999999999999999999998775555421 4556778889999999999999999986655
No 167
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=78.10 E-value=50 Score=40.60 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=11.9
Q ss_pred ccCHHHHHHHHHHHhhh
Q 001097 700 FRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 700 F~t~edA~~Am~~l~~~ 716 (1158)
+|+++.|+.+.++|=+.
T Consensus 214 ~eki~~Ai~vienli~~ 230 (554)
T KOG0119|consen 214 QEKIKKAIAVIENLIQS 230 (554)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55677777777777664
No 168
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=78.10 E-value=9.9 Score=46.66 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.4
Q ss_pred cccccC
Q 001097 1065 KSTFTS 1070 (1158)
Q Consensus 1065 EsTF~~ 1070 (1158)
+-+|.-
T Consensus 295 eGVfP~ 300 (582)
T PF03276_consen 295 EGVFPT 300 (582)
T ss_pred cccccC
Confidence 344443
No 169
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=76.87 E-value=3.4 Score=46.57 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=104.1
Q ss_pred ccCceEEeccCCCccCHHH-H--HHHhhccCCcceEEEec-----CCceEEEEecCHHHHHHHHHhhcCCcee-E-EEEe
Q 001097 568 SASKQLWLGSFGPEASEAH-I--RFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-R-VKFM 637 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~d-L--~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~L~G~~~~-R-I~F~ 637 (1158)
.+-=.+.+|++++.|..+- | ...|+.|-.|..-.+++ -+++||+.|+.-.--..+-..-.++.+. + ||-+
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 5556678899998877665 4 78899999988666543 6799999998655555555555555554 2 5533
Q ss_pred eccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee----ecCCCCCeeeccccCHHHHHHHHHHH
Q 001097 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHL 713 (1158)
Q Consensus 638 r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f----~dlseK~~LpVEF~t~edA~~Am~~l 713 (1158)
+-..=-+-..-- =-..-..|+-|-.++.+.+|-|-.-|.+|-.|--.++ .....+++=||-|.+++|+++||+-|
T Consensus 174 ~gtswedPsl~e-w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 174 AGTSWEDPSLAE-WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccccCCccccc-CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 210000000000 0013567899999999999988888887775544433 23778899999999999999999999
Q ss_pred hhhccc
Q 001097 714 RQHRKS 719 (1158)
Q Consensus 714 ~~~r~~ 719 (1158)
+++--|
T Consensus 253 ~gkyVg 258 (290)
T KOG0226|consen 253 NGKYVG 258 (290)
T ss_pred cccccc
Confidence 998766
No 170
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.84 E-value=22 Score=46.35 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=28.4
Q ss_pred hccCCCceEeechh--hhhccCCc---------hHHHHhhhcccCCCc-----hhhhhhhHHHH
Q 001097 189 SSFDGKDIIHTVDK--EITKMLDS---------DEVFLGLKKKFSDED-----ESSLIKLSKFR 236 (1158)
Q Consensus 189 ~~f~gkdi~~~~~~--~~~~~~d~---------~e~~~~lk~~~~~~~-----~~~~~~l~~~~ 236 (1158)
.-+++-|||++.+. +++.|+.. .+-+.+||+-+++++ .--+++..|.|
T Consensus 94 ~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkLLssGsFYfS~~fDlt~~~q~r 157 (1080)
T KOG0566|consen 94 GKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKLLSSGSFYFSSDFDLTCFAQNR 157 (1080)
T ss_pred ccccceeEEEeccchhhheecccCCCCccccccccchHHHHHHhhCCcEEEeeccchhhHHHhc
Confidence 34567777777777 66666532 256677777766653 12334555555
No 171
>PRK09752 adhesin; Provisional
Probab=75.99 E-value=2.5 Score=55.50 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=8.4
Q ss_pred heeeeccccce
Q 001097 122 VVIYMHNSSVA 132 (1158)
Q Consensus 122 v~i~m~~~~~a 132 (1158)
+.=+|..|++|
T Consensus 50 ~~~~~~~~~~~ 60 (1250)
T PRK09752 50 LSGITQDWSIA 60 (1250)
T ss_pred ccCCcccceec
Confidence 45688899876
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=75.93 E-value=5.2 Score=39.21 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCCccCHHHHHHHhhccCCcceEE-------------EecCCceEEEEecCHHHHHHHHHh
Q 001097 578 FGPEASEAHIRFQIDRFGPLEHFF-------------FFPIKGFALVEYINIIDAIRAREY 625 (1158)
Q Consensus 578 L~~~vte~dL~~~F~~fGpLe~V~-------------~~~~rgfAFVeF~~i~DAv~A~~~ 625 (1158)
.++. ....|.++|++||.|-+.. .....++--|.|.+..+|.+|++.
T Consensus 14 fp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 14 FPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp --GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred cCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 3444 5678889999999987764 566899999999999999999863
No 173
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=75.54 E-value=12 Score=42.60 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=10.1
Q ss_pred ecccccccCccceeeeeecc
Q 001097 1013 WQGALCKSGVHYCTIYAQRE 1032 (1158)
Q Consensus 1013 WqG~l~kSGAnyCtIl~s~v 1032 (1158)
|+-+. .+.+.|=+.++++.
T Consensus 127 W~~Sd-a~~L~yG~alls~~ 145 (297)
T PF07174_consen 127 WVESD-ASHLDYGSALLSKQ 145 (297)
T ss_pred ccccc-cceeecceeeeccC
Confidence 55444 34456666666554
No 174
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=73.97 E-value=17 Score=46.41 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=14.3
Q ss_pred hHHHhhhccCCchhhhhhccc
Q 001097 1116 IWARLMFILPYSQDICSMLSI 1136 (1158)
Q Consensus 1116 ~w~rlLfLlPpSeEic~~L~l 1136 (1158)
.|..++.+.|.-+|.-.....
T Consensus 504 ~l~~l~~~~pt~~E~~~l~~~ 524 (833)
T KOG1922|consen 504 QLEKLLKFAPTKEEETKLKEE 524 (833)
T ss_pred HHHHHHccCCChhHHHHHHhh
Confidence 777777777777766664443
No 175
>PRK09752 adhesin; Provisional
Probab=73.64 E-value=3.2 Score=54.53 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=4.4
Q ss_pred cceEEEcc
Q 001097 655 CFHVYVGN 662 (1158)
Q Consensus 655 s~~LwVG~ 662 (1158)
...||||.
T Consensus 701 ~~~~~~~~ 708 (1250)
T PRK09752 701 ASSLWVGD 708 (1250)
T ss_pred hheeEEcC
Confidence 44566663
No 176
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=73.48 E-value=4 Score=43.16 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=44.8
Q ss_pred cCceEEeccCCCccCHHHHHHHhhc-cCCc---ceEEE-e-------cCCceEEEEecCHHHHHHHHHhhcCCc
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDR-FGPL---EHFFF-F-------PIKGFALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~-fGpL---e~V~~-~-------~~rgfAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
...+|-|-+|+|+.||+++.+++.. +|.- ..|.. + ..-+-|||.|.+.+|...=++.++|..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 3458999999999999999998887 7766 33331 1 134679999999999999999999965
No 177
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=72.80 E-value=9 Score=37.23 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=40.4
Q ss_pred eEEeccCCCccCH----HHHHHHhhccCC-cceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 572 QLWLGSFGPEASE----AHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 572 ~LWVGnL~~~vte----~dL~~~F~~fGp-Le~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.|+|-||+.+..- .-|+.+++-||= +-+| ..+.|+|-|.+.+.|.+|.+-|+|.-+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 5899999998664 456788888874 3333 3699999999999999999999999776
No 178
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=72.23 E-value=3.6 Score=46.32 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=48.3
Q ss_pred ccCceEEeccCCCccCHHHHHHHhhccCCcceEEE-e--c--CCceEEEEecCHHHHHHHHHhh
Q 001097 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-F--P--IKGFALVEYINIIDAIRAREYI 626 (1158)
Q Consensus 568 ~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~-~--~--~rgfAFVeF~~i~DAv~A~~~L 626 (1158)
.....|||-||.+.|+.+.|+..|++||+|+.-.+ + + .-+=.+|+|.+.-.|..|.+..
T Consensus 29 a~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 29 AMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 33468999999999999999999999999995443 2 2 3345699999999998888776
No 179
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.86 E-value=22 Score=46.34 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=24.9
Q ss_pred CCCceEeechhhhhccCCchHHHHhhhcccCCCch-hhhhhhHHHHHh
Q 001097 192 DGKDIIHTVDKEITKMLDSDEVFLGLKKKFSDEDE-SSLIKLSKFRLL 238 (1158)
Q Consensus 192 ~gkdi~~~~~~~~~~~~d~~e~~~~lk~~~~~~~~-~~~~~l~~~~~l 238 (1158)
...-|++|.|-++.+|-+..+.|-.|.....+++- .+...+++||-|
T Consensus 89 ~~~sv~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkL 136 (1080)
T KOG0566|consen 89 GSESVGKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKL 136 (1080)
T ss_pred CCceeccccceeEEEeccchhhheecccCCCCccccccccchHHHHHH
Confidence 33456666666666666666555555444444422 223445555544
No 180
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=71.02 E-value=1.2e+02 Score=36.08 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=4.9
Q ss_pred hHHHHHhhhc
Q 001097 669 KDEILHESYK 678 (1158)
Q Consensus 669 kEELfsE~~k 678 (1158)
++.||.++.|
T Consensus 31 R~ALL~DI~K 40 (437)
T KOG4462|consen 31 RNALLGDIQK 40 (437)
T ss_pred hHHHHHHhhh
Confidence 4445555544
No 181
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=2.3e+02 Score=37.45 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=4.0
Q ss_pred CCCCCcCCC
Q 001097 925 SVTPLAQIQ 933 (1158)
Q Consensus 925 s~tPLsQpQ 933 (1158)
+..|++|.+
T Consensus 136 ~~~pls~~~ 144 (1007)
T KOG1984|consen 136 PAGPLSQGP 144 (1007)
T ss_pred CCCccccCC
Confidence 344444444
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.82 E-value=94 Score=41.31 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.7
Q ss_pred cccccccc
Q 001097 1033 ESDICKYT 1040 (1158)
Q Consensus 1033 dsdIC~a~ 1040 (1158)
+..+|+.+
T Consensus 956 e~~~~r~~ 963 (1049)
T KOG0307|consen 956 EELLQRCS 963 (1049)
T ss_pred HHHHHHhh
Confidence 44455433
No 183
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=69.25 E-value=6 Score=45.98 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=57.7
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee--cCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~--dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
-|.|+|-+||=..-+-+|-.=|.+||.+-.++|+ +-.+|+.=||-||+.+||-+|-+-|++-..|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee
Confidence 5899999999999899999999999988888776 4778999999999999999999999886655
No 184
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=68.13 E-value=6 Score=47.29 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=43.4
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccC--Cceeec--CCCCCeeeccccCHHHHHHHHH
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKG--PYMVTD--LSCEGALLMEFRTPEEATTAMA 711 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kg--Pv~f~d--lseK~~LpVEF~t~edA~~Am~ 711 (1158)
-.+|||+++|...+.++|.++|+.|+.+. .|.++. .......||||++.+++-+|..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~ 348 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE 348 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh
Confidence 34499999999999999999999988444 444443 2223778999999988877753
No 185
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=67.73 E-value=11 Score=46.38 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=61.3
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhc--cCCcceEEEecCCceEEEEecCHHHHHHHHHhh-------c
Q 001097 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDR--FGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-------R 627 (1158)
Q Consensus 557 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~--fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L-------~ 627 (1158)
+|.+---.--...-|-+-+-.|+....+++++.+|.- +=+.-+.-|+..-++ ||.|++..||-.|.++| |
T Consensus 162 vDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 162 VDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred eccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhc
Confidence 4444444444566788999999999999999999975 566667777766555 99999999999998877 5
Q ss_pred CCcee-EEE
Q 001097 628 NHFSW-RVK 635 (1158)
Q Consensus 628 G~~~~-RI~ 635 (1158)
|+.++ ||+
T Consensus 241 gKpImARIK 249 (684)
T KOG2591|consen 241 GKPIMARIK 249 (684)
T ss_pred Ccchhhhhh
Confidence 77777 887
No 186
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=67.71 E-value=48 Score=37.51 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=5.3
Q ss_pred hccCCchhh
Q 001097 1122 FILPYSQDI 1130 (1158)
Q Consensus 1122 fLlPpSeEi 1130 (1158)
.|.++.|+|
T Consensus 314 klihpdedi 322 (341)
T KOG2893|consen 314 KLIHPDEDI 322 (341)
T ss_pred eeeCCcccc
Confidence 556666554
No 187
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=66.89 E-value=15 Score=43.98 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=10.1
Q ss_pred cccchhhH--HHhhhccCCchh
Q 001097 1110 IPAVKSIW--ARLMFILPYSQD 1129 (1158)
Q Consensus 1110 iPa~~~~w--~rlLfLlPpSeE 1129 (1158)
+..++.+| .+.|++.....+
T Consensus 328 ~~~~s~~~~~~sm~~~~~~~~~ 349 (409)
T KOG4590|consen 328 INTVSSMGCAPSMLYHCMSDDE 349 (409)
T ss_pred cCCccccCcccchhhccccccc
Confidence 34444433 345666665555
No 188
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.75 E-value=21 Score=44.01 Aligned_cols=10 Identities=50% Similarity=0.557 Sum_probs=4.6
Q ss_pred hHHHHHHhhc
Q 001097 95 TSVQRIVADL 104 (1158)
Q Consensus 95 ~svqri~adl 104 (1158)
|++=|++|..
T Consensus 52 TtlA~~lA~~ 61 (585)
T PRK14950 52 TSTARILAKA 61 (585)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 189
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=66.65 E-value=11 Score=46.06 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=12.9
Q ss_pred cccccccceecccccccCc
Q 001097 1004 RSGQLLQYQWQGALCKSGV 1022 (1158)
Q Consensus 1004 sqg~~i~~qWqG~l~kSGA 1022 (1158)
.....+.+-|+......|-
T Consensus 280 ~~r~~~KL~Wr~~~~~~~~ 298 (817)
T KOG1925|consen 280 TKRKTVKLFWRDVKLAGGH 298 (817)
T ss_pred ccCceeEEEeecceecCCC
Confidence 3456678889988775543
No 190
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=66.15 E-value=79 Score=39.00 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=9.8
Q ss_pred eccccCHHHHHHHHHHHhhhc
Q 001097 697 LMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 697 pVEF~t~edA~~Am~~l~~~r 717 (1158)
+|.=+|.|---.|.+.++..-
T Consensus 208 ~Isadt~eki~~Ai~vienli 228 (554)
T KOG0119|consen 208 LISADTQEKIKKAIAVIENLI 228 (554)
T ss_pred EEecchHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 191
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.63 E-value=51 Score=42.63 Aligned_cols=17 Identities=18% Similarity=0.769 Sum_probs=13.7
Q ss_pred cccccccCCCCCCCCcc
Q 001097 1035 DICKYTHDISEPAEWPA 1051 (1158)
Q Consensus 1035 dIC~a~na~sEPaEWPs 1051 (1158)
.+|...|.+++-..|..
T Consensus 244 NlC~~~NdvP~~f~~~~ 260 (887)
T KOG1985|consen 244 NLCGRVNDVPDDFDWDP 260 (887)
T ss_pred chhhhhcCCcHHhhcCc
Confidence 68888888888888873
No 192
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=64.88 E-value=40 Score=45.23 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=10.0
Q ss_pred HhhccccccccCchhHhh
Q 001097 101 VADLVPRYALYCPTALEA 118 (1158)
Q Consensus 101 ~adliprya~~cptalea 118 (1158)
+-|+|=|||-+-|-++-+
T Consensus 1187 l~~iIdrfafv~ppvva~ 1204 (1958)
T KOG0391|consen 1187 LQDIIDRFAFVIPPVVAA 1204 (1958)
T ss_pred HHHHHHHheeecccccCC
Confidence 345566666665555544
No 193
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=62.77 E-value=18 Score=35.48 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=53.7
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCcee-------ecCCCCCeeeccccCHHHHHHHHHHHhhhccccCCC
Q 001097 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMV-------TDLSCEGALLMEFRTPEEATTAMAHLRQHRKSRSNY 723 (1158)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-------~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~rs~~ 723 (1158)
.|-|=+||+..+.++|..+++.. ..|.+.| ......++++|.|-++++|..-++.++|++-...++
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~-~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEH-FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh-ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 46678999999999999999875 4555554 335567999999999999999999999999775443
No 194
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=62.40 E-value=85 Score=40.42 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=7.2
Q ss_pred CCCCCCCCCCCCC
Q 001097 853 GNMPCLPMATQGP 865 (1158)
Q Consensus 853 G~~P~~p~~~~gP 865 (1158)
-..+.+|....+|
T Consensus 627 ~~~~~m~i~~~~P 639 (759)
T PF05518_consen 627 ADVPEMPISTVPP 639 (759)
T ss_pred CCccccccccCCC
Confidence 3455566665555
No 195
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=60.82 E-value=20 Score=40.73 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=62.0
Q ss_pred HHHHHHHhhcCCcee----EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCc-eeecCCC
Q 001097 618 DAIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSC 692 (1158)
Q Consensus 618 DAv~A~~~L~G~~~~----RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv-~f~dlse 692 (1158)
=|..|+++|+|+.+. ||+|+ ....|||=+.++.++-|.+..++..|+..+-. .+.|-..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa----------------~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFA----------------MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEee----------------ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc
Confidence 378899999999765 99988 23789999999999999999999977644433 3344333
Q ss_pred CC--eeeccccCHHHHHHHHHHHhh
Q 001097 693 EG--ALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 693 K~--~LpVEF~t~edA~~Am~~l~~ 715 (1158)
+. .=.|||.+--.|..|+.-.+.
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhcc
Confidence 33 346999998888888766643
No 196
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=60.77 E-value=11 Score=44.08 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=48.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCCeeeccccCHHHHHHHHHHH
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHL 713 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~dlseK~~LpVEF~t~edA~~Am~~l 713 (1158)
.+....||||+.-+.+..-+|-.-|- ..|++++ ..+..+.+|||+|-|-+.|-.|++-+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFy---qyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~ 284 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFY---QYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKS 284 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHh---hcCCeeeEEeecccccceeeehhhHHHHHHHHhh
Confidence 45689999999999888888887777 4667755 46788899999999999999887643
No 197
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=59.77 E-value=1.4e+02 Score=40.58 Aligned_cols=20 Identities=5% Similarity=-0.258 Sum_probs=11.6
Q ss_pred echhhhhccCCchHHHHhhh
Q 001097 199 TVDKEITKMLDSDEVFLGLK 218 (1158)
Q Consensus 199 ~~~~~~~~~~d~~e~~~~lk 218 (1158)
+|.+-.++.+||..++..++
T Consensus 1085 ~gsr~pv~~ddpa~ltp~sg 1104 (1958)
T KOG0391|consen 1085 LGSRPPVGGDDPAPLTPQSG 1104 (1958)
T ss_pred hccCCCCCCCCccccccccC
Confidence 34555566666666665554
No 198
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=59.72 E-value=20 Score=45.80 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=5.9
Q ss_pred HHHhhccCCcceEE
Q 001097 588 RFQIDRFGPLEHFF 601 (1158)
Q Consensus 588 ~~~F~~fGpLe~V~ 601 (1158)
+...+.++.+..+.
T Consensus 116 ~~~~~~~~~~~~~~ 129 (833)
T KOG1922|consen 116 MCLSEKLLPLQWLL 129 (833)
T ss_pred HhhcccccchhhhH
Confidence 33344444444333
No 199
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=59.40 E-value=11 Score=42.09 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=53.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhh
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
.+--..|||||.+=.+.||+|-.=|+.||.+....++ | ..+|++-||-|+..|.|.+|-+..+-
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p 76 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP 76 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC
Confidence 3345679999999999999999999998877766553 4 88999999999999999999876543
No 200
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.17 E-value=13 Score=43.35 Aligned_cols=62 Identities=11% Similarity=0.244 Sum_probs=50.2
Q ss_pred CceEEeccCCCccCHHHH------HHHhhccCCcceEEEec-------CCceE--EEEecCHHHHHHHHHhhcCCce
Q 001097 570 SKQLWLGSFGPEASEAHI------RFQIDRFGPLEHFFFFP-------IKGFA--LVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 570 S~~LWVGnL~~~vte~dL------~~~F~~fGpLe~V~~~~-------~rgfA--FVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
-+-+||-.|++-|..+++ .+-|++||+|..+.+-+ --+-| ||.|-.-+||.+++...+|+.+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 356799999999888883 57899999999998843 12234 9999999999999999999754
No 201
>PHA03378 EBNA-3B; Provisional
Probab=56.94 E-value=2.3e+02 Score=36.47 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=2.5
Q ss_pred hhhHHHH
Q 001097 1092 FQDFVSY 1098 (1158)
Q Consensus 1092 fqDFisy 1098 (1158)
|--...+
T Consensus 944 ~~vi~en 950 (991)
T PHA03378 944 FSVIWEN 950 (991)
T ss_pred ceeehhh
Confidence 3333333
No 202
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=55.11 E-value=1.2e+02 Score=39.23 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=34.4
Q ss_pred CceEEeccCCCcc-------CHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHH
Q 001097 570 SKQLWLGSFGPEA-------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAR 623 (1158)
Q Consensus 570 S~~LWVGnL~~~v-------te~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~ 623 (1158)
+---||-.|-|+- .|..+..+.++-|==|+|++.|. ||| ||..-|--.-+
T Consensus 579 c~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRA-GfA---YRr~F~kF~qR 635 (1106)
T KOG0162|consen 579 CQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRA-GFA---YRRAFDKFAQR 635 (1106)
T ss_pred cCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhh-hhH---HHHHHHHHHHH
Confidence 3344676665554 46788899999999999999764 777 45555544333
No 203
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.39 E-value=27 Score=41.04 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=33.1
Q ss_pred CcchhhhHHHHHhhcccccceecccch-h--hHHHhhhccCCchhhhh
Q 001097 1088 DHKGFQDFVSYLKQRECAGVIKIPAVK-S--IWARLMFILPYSQDICS 1132 (1158)
Q Consensus 1088 D~k~fqDFisyLrqkd~AGVIKiPa~~-~--~w~rlLfLlPpSeEic~ 1132 (1158)
++..-+|-|-+|+..-+.|+|.+..-= . .++|=.|++=..-+-|+
T Consensus 311 ~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat~qk~r 358 (365)
T KOG2391|consen 311 LDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILRATMQKCR 358 (365)
T ss_pred hhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888889888889999876543 3 67787888776666665
No 204
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=53.50 E-value=30 Score=39.10 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.7
Q ss_pred CCccCC
Q 001097 820 SNWSVS 825 (1158)
Q Consensus 820 anw~~~ 825 (1158)
.+|.+-
T Consensus 59 v~wva~ 64 (253)
T PF05308_consen 59 VLWVAN 64 (253)
T ss_pred hcceec
Confidence 445443
No 205
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=52.51 E-value=31 Score=42.35 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=79.5
Q ss_pred eeeecCCccccc---ccccCceEEeccCCCccCHHHHHHHhh-ccCCcceEEEe------cCCceEEEEecCHHHHHHHH
Q 001097 554 VWYFDEDPAAMD---IFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF------PIKGFALVEYINIIDAIRAR 623 (1158)
Q Consensus 554 ~~~~~g~p~a~d---v~~~S~~LWVGnL~~~vte~dL~~~F~-~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~ 623 (1158)
=|.+.-.-+.+| .+-+.|+++||.|+.-++..||...|+ -||-+.-|-+. .++|-+=|.|.|-.-=++|+
T Consensus 351 PW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 351 PWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred eeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 376655555555 456799999999999999999999999 89999988873 27999999999988888887
Q ss_pred HhhcCCceeEEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhccc---ccCCc
Q 001097 624 EYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV---YKGPY 685 (1158)
Q Consensus 624 ~~L~G~~~~RI~F~r~~~g~rg~~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag---~kgPv 685 (1158)
.+ +|...+ + ..-.+.| .|.+.+-+|++.+|....- +++|+
T Consensus 431 sa---------rFvql~--h--------~d~~KRV---EIkPYv~eDq~CdeC~g~~c~~q~aPf 473 (520)
T KOG0129|consen 431 SA---------RFVQLD--H--------TDIDKRV---EIKPYVMEDQLCDECGGRRCGGQFAPF 473 (520)
T ss_pred hh---------heEEEe--c--------cccceee---eecceeccccchhhhcCeeccCccCCc
Confidence 65 232211 0 0012222 3567778889999988733 66665
No 206
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=50.09 E-value=25 Score=41.74 Aligned_cols=30 Identities=10% Similarity=-0.072 Sum_probs=16.5
Q ss_pred ccccccccceecccccccCccceeeeeecc
Q 001097 1003 ERSGQLLQYQWQGALCKSGVHYCTIYAQRE 1032 (1158)
Q Consensus 1003 esqg~~i~~qWqG~l~kSGAnyCtIl~s~v 1032 (1158)
|..-.-.+.+.+=+...-.+||....++++
T Consensus 228 E~RVkMnRmR~RIA~RLKdsQNt~A~LTTF 257 (457)
T KOG0559|consen 228 ERRVKMNRMRLRIAERLKDSQNTAAMLTTF 257 (457)
T ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 444444455555555555566666666665
No 207
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=25 Score=41.59 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~-d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+-|-+.|+|-..-+++.+|+|.--|..||.+..+.++ | ..+=.++||||++-|..-+|..-|.--.+-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 4489999999999999999999999998887777663 3 455578999999999999998888764443
No 208
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=49.39 E-value=21 Score=30.99 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=35.0
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCCeeeccccCHHHHHHHH
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAM 710 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dlseK~~LpVEF~t~edA~~Am 710 (1158)
+.|=|-|.+.. ..++++.-|..+|.+..+.+. ...+.++|.|.+..||.+|+
T Consensus 2 ~wI~V~Gf~~~-~~~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD-LAEEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch-HHHHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 34455555533 457777777765544443332 36899999999999999884
No 209
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=49.22 E-value=14 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=12.9
Q ss_pred ccceEEEccCCCc-chhHHHHHhh
Q 001097 654 SCFHVYVGNIPNQ-WAKDEILHES 676 (1158)
Q Consensus 654 ~s~~LwVG~Iss~-~~kEELfsE~ 676 (1158)
+....=|+.++.. ..-|++.+|.
T Consensus 37 ~~~~~~v~~~p~~i~Ayd~~i~~~ 60 (480)
T KOG2675|consen 37 AASAGDVAAVPPSIRAYDDLISEP 60 (480)
T ss_pred cccccccccCchHHHHHHHHHHhH
Confidence 3444456666655 5556666554
No 210
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=47.59 E-value=18 Score=41.72 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=38.7
Q ss_pred hHHHHHhhhcccccCCceee---cCCC--CCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 669 KDEILHESYKVVYKGPYMVT---DLSC--EGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 669 kEELfsE~~kag~kgPv~f~---dlse--K~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
.+|+..|+.+.+..+.+-+. .+.+ .-.+||||+++++|+.|..-|||.--|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 45667788898888877442 2322 346799999999999999999996644
No 211
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=47.45 E-value=23 Score=42.42 Aligned_cols=90 Identities=23% Similarity=0.459 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccccce
Q 001097 53 DEIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVA 132 (1158)
Q Consensus 53 ~e~r~v~~~y~r~k~~~~~~~~~~~~~leq~y~~li~~srgc~svqri~adliprya~~cptaleaa~kv~i~m~~~~~a 132 (1158)
+-|.++|++|.||-..-.+ . +=-++|.-+|.++.|-+--+|+.|-+||||--|-|.--.-|.-+-.|.
T Consensus 2 ~~ie~ly~~~e~l~~a~dk-----~-q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~------ 69 (460)
T KOG2213|consen 2 DNIEKLYEFYEILSEATDK-----S-QHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDL------ 69 (460)
T ss_pred chHHHHHHHHHHHHhhchh-----h-hhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhcc------
Confidence 3588999999998543211 1 344789999999999999999999999999999886444444333332
Q ss_pred eeccCCCCcchhhhhhhhhhccccccccc
Q 001097 133 LINRGEDADGVAFQTASACIFGLGDICRT 161 (1158)
Q Consensus 133 ~~~rged~dgva~~ta~aci~gl~dic~~ 161 (1158)
. .+|--||.-| -|-||--.|-.
T Consensus 70 -~--ed~d~~ir~q----aik~lp~fc~~ 91 (460)
T KOG2213|consen 70 -C--EDDDVGIRRQ----AIKGLPLFCKG 91 (460)
T ss_pred -c--cccchhhHHH----HHhccchhccC
Confidence 1 1222244443 47788888864
No 212
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=45.67 E-value=79 Score=30.95 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=45.5
Q ss_pred eEEeccCCCccCHHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCceeEEE
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 635 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~RI~ 635 (1158)
+++-=..+..=-..||..+|..||.|.==|+ +-.-|||...+.+.|..|+..+.=...++|.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHTT-SSSEEE
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhccCCceEEE
Confidence 3333337777788999999999999986666 3478999999999999999999765556654
No 213
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=45.66 E-value=2e+02 Score=37.22 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=8.0
Q ss_pred CCCCCCCCCcceeeeec
Q 001097 542 LPVPYASTTSQIVWYFD 558 (1158)
Q Consensus 542 ~~~~~~~~~s~~~~~~~ 558 (1158)
+|.+.+.+.+++.=|.|
T Consensus 280 lpal~~~~~~~~a~~vD 296 (759)
T PF05518_consen 280 LPALASPAWSSVAAWVD 296 (759)
T ss_pred CccccccchhhHhhHhH
Confidence 45555555444444444
No 214
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.65 E-value=4.7e+02 Score=34.59 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=4.4
Q ss_pred ccCCCCCCCC
Q 001097 1040 THDISEPAEW 1049 (1158)
Q Consensus 1040 ~na~sEPaEW 1049 (1158)
+|.--+=-.|
T Consensus 228 iNPFV~fid~ 237 (887)
T KOG1985|consen 228 INPFVEFIDQ 237 (887)
T ss_pred cCCeEEecCC
Confidence 5544444444
No 215
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=44.81 E-value=17 Score=44.12 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.2
Q ss_pred cccCCC
Q 001097 1081 LVPSSP 1086 (1158)
Q Consensus 1081 Lvpss~ 1086 (1158)
++|...
T Consensus 93 ~~Pvp~ 98 (465)
T PF01690_consen 93 VFPVPK 98 (465)
T ss_pred EEecCC
Confidence 333333
No 216
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=44.68 E-value=65 Score=37.02 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=16.7
Q ss_pred ceecccccccCccceeeeeeccccccc
Q 001097 1011 YQWQGALCKSGVHYCTIYAQREESDIC 1037 (1158)
Q Consensus 1011 ~qWqG~l~kSGAnyCtIl~s~vdsdIC 1037 (1158)
+-..|...+.|-.-|.|-.-+...+++
T Consensus 219 ~VkvGDsVkkGQvLavIEAMKmeieV~ 245 (274)
T PLN02983 219 FVKVGDKVQKGQVVCIIEAMKLMNEIE 245 (274)
T ss_pred eeCCCCEecCCCEEEEEEeeceeeEEe
Confidence 445666666676777666666555554
No 217
>PLN00131 hypothetical protein; Provisional
Probab=44.67 E-value=42 Score=35.90 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHh-hchHHHHHHHH
Q 001097 5 EQPLKKRKLYDLPPESPKPVE---GPQSDVVPPQTPPPLSQDEIQSRR-RNKDEIRSVYE 60 (1158)
Q Consensus 5 e~p~kkrkl~~~p~~~p~p~~---~~~~~~~~~~~~~p~~~ee~~~~~-rn~~e~r~v~~ 60 (1158)
..-+.||-..++-+. |||.. .+|++-.-|.++||+...+.+.|| |-.||+|-+.+
T Consensus 89 ~~~~SrrP~~DLNst-pqpeldlnqpaaheqepepapplddqdlltkrkrvseelrlllq 147 (218)
T PLN00131 89 DAGPSRRPVLDLNST-PQPELDLNQPAAHEQEPEPAPPLDDQDLLTKRKRVSEELRLLLQ 147 (218)
T ss_pred CCCcCcCCcccCCCC-CCcccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345677888887776 66665 344445678889999888887766 66888988775
No 218
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=43.35 E-value=44 Score=32.81 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=37.8
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecC-CCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-SCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 656 ~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~dl-seK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
+.|.|-++....++|+|-..+.. ++++.++|+ ......+|=|.+.++|..|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~---~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ---FGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S---S--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHh---cCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46778888899999999999885 558888874 44778899999999999999988775
No 219
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.42 E-value=1.5e+02 Score=36.42 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=6.4
Q ss_pred cCCcCCCCCCCCCc
Q 001097 382 EGSEVDSDEDDSDP 395 (1158)
Q Consensus 382 e~~~~~~d~~~s~~ 395 (1158)
|+-.+|.+.|+.++
T Consensus 82 e~~~~~~~~d~vd~ 95 (483)
T KOG2236|consen 82 EDGSVDQPDDLVDP 95 (483)
T ss_pred ccCcccccccccch
Confidence 34444444444443
No 220
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=42.28 E-value=5.3e+02 Score=31.17 Aligned_cols=6 Identities=0% Similarity=0.329 Sum_probs=2.3
Q ss_pred cccccc
Q 001097 1064 VKSTFT 1069 (1158)
Q Consensus 1064 VEsTF~ 1069 (1158)
+.++|.
T Consensus 412 ~~~iy~ 417 (437)
T KOG4462|consen 412 LPKIYP 417 (437)
T ss_pred chhhcc
Confidence 333333
No 221
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=41.80 E-value=13 Score=41.56 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=46.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCc-ee-----ecCCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MV-----TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv-~f-----~dlseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
+-.-+.||||+..+.++ |||+.|+-+ .-||+ ++ .|...| .|+|+|..----.-||..|++-+..
T Consensus 6 ae~drtl~v~n~~~~v~-eelL~Elfi--qaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVS-EELLSELFI--QAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred cchhhHHHHHhhhhhhh-HHHHHHHhh--ccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 44689999999998865 556666554 33443 22 244444 7999999988889999999997766
No 222
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=41.60 E-value=26 Score=38.94 Aligned_cols=64 Identities=19% Similarity=0.023 Sum_probs=52.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee---c-CCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---D-LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f~---d-lseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
...+.+|||++--....+++..++..=+....+++. + ...|+.+++||.+.+.+..|.+ |++-.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~ 166 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE 166 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc
Confidence 368899999999999999999999988877644442 2 3479999999999999999988 77643
No 223
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=39.72 E-value=3.2e+02 Score=33.61 Aligned_cols=17 Identities=6% Similarity=-0.074 Sum_probs=8.9
Q ss_pred cccCCCCcccccccCCCC
Q 001097 762 SAGGFGSPHTAPFHSSQP 779 (1158)
Q Consensus 762 A~~~fGei~rf~idfS~p 779 (1158)
++.+.|++=|.+ ++...
T Consensus 192 ~~srt~tlGr~~-~~Rtl 208 (483)
T KOG2546|consen 192 LGSRTGTLGRCQ-EYRTL 208 (483)
T ss_pred cCccccccccCC-ccccC
Confidence 455556555555 45443
No 224
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.07 E-value=21 Score=41.70 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=47.2
Q ss_pred ceEEeccCCCccCHHHHHH---HhhccCCcceEEEecCCc---------eEEEEecCHHHHHHHHHhhcCCc
Q 001097 571 KQLWLGSFGPEASEAHIRF---QIDRFGPLEHFFFFPIKG---------FALVEYINIIDAIRAREYIRNHF 630 (1158)
Q Consensus 571 ~~LWVGnL~~~vte~dL~~---~F~~fGpLe~V~~~~~rg---------fAFVeF~~i~DAv~A~~~L~G~~ 630 (1158)
+-+||-.|++.+..+++.+ -|++||.|-.|..++.++ -++|-|+..+||.+|+..-+|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH
Confidence 5678888888866555543 588888999999877442 37999999999999999988843
No 225
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=38.12 E-value=64 Score=37.85 Aligned_cols=12 Identities=17% Similarity=-0.158 Sum_probs=6.4
Q ss_pred CCCCcccccccC
Q 001097 765 GFGSPHTAPFHS 776 (1158)
Q Consensus 765 ~fGei~rf~idf 776 (1158)
+.|++.||-.=|
T Consensus 5 AL~SLlrWGslF 16 (407)
T PF04625_consen 5 ALGSLLRWGSLF 16 (407)
T ss_pred hhhhhhhhhccc
Confidence 345555655544
No 226
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=37.79 E-value=19 Score=40.82 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHhhh-cccccCCceeec---CCCCCeeeccccCHHHHHHHHHHHhhhccc
Q 001097 670 DEILHESY-KVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1158)
Q Consensus 670 EELfsE~~-kag~kgPv~f~d---lseK~~LpVEF~t~edA~~Am~~l~~~r~~ 719 (1158)
|++|.|+. +.+.+..+.+-+ ..-.+.++|.|+.-|+|.+|...||+..-+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~ 136 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN 136 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc
Confidence 78999998 777666665422 333678999999999999999999997754
No 227
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=37.40 E-value=1.2e+03 Score=32.47 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=12.7
Q ss_pred eeccCCCCcchhhhhhh-hhhccccccc
Q 001097 133 LINRGEDADGVAFQTAS-ACIFGLGDIC 159 (1158)
Q Consensus 133 ~~~rged~dgva~~ta~-aci~gl~dic 159 (1158)
+|.+||-.-||--+-++ +-+-||++++
T Consensus 604 lie~g~l~~g~l~Kkt~G~s~g~lvh~i 631 (1605)
T KOG0260|consen 604 LIEGGELLIGVLCKKTVGSSAGGLVHVI 631 (1605)
T ss_pred EEeCCceEEEEeeccccccccCceEEEe
Confidence 45555555555433332 3333455554
No 228
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.98 E-value=9.3 Score=43.61 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=38.9
Q ss_pred cCHHHHHHHhhccCCcceEEEe-----c----C-------Cce---------EEEEecCHHHHHHHHHhhcCCce
Q 001097 582 ASEAHIRFQIDRFGPLEHFFFF-----P----I-------KGF---------ALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~-----~----~-------rgf---------AFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
-+|+-|+..|+.||.|++|-+- + + .|| |||.|..-.--..|+.+|+|...
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 5789999999999999998761 1 1 233 56788888888889999998754
No 229
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.92 E-value=1e+02 Score=38.77 Aligned_cols=19 Identities=47% Similarity=0.564 Sum_probs=12.0
Q ss_pred HHHhccCCc--hHHHHHHhhc
Q 001097 86 SLITASRGC--TSVQRIVADL 104 (1158)
Q Consensus 86 ~li~~srgc--~svqri~adl 104 (1158)
+|++.-+|+ |++-|++|..
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 367777766 5666666653
No 230
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=36.80 E-value=47 Score=39.21 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=55.9
Q ss_pred cccCceEEeccCCCccCHHHHHHHhhccCCcce--------EEEe------cCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 567 ~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~--------V~~~------~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
.+-..++||=.|+..+++.+|.+.|..+|.|.. ++++ .++|=|.|-|+|.--|.+|+...+|+..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344556788899999999999999999999852 4444 48999999999999999999999998655
No 231
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.66 E-value=16 Score=43.79 Aligned_cols=109 Identities=23% Similarity=0.393 Sum_probs=62.3
Q ss_pred CCCCCHHHHHHHhh----chHHHHHHHHHHHH--HHHHHhhcccCCchHHHHHHH----------HHHhccCCchHHHHH
Q 001097 37 PPPLSQDEIQSRRR----NKDEIRSVYECYRR--LKACIAQKDARRLPELEQAYL----------SLITASRGCTSVQRI 100 (1158)
Q Consensus 37 ~~p~~~ee~~~~~r----n~~e~r~v~~~y~r--~k~~~~~~~~~~~~~leq~y~----------~li~~srgc~svqri 100 (1158)
.+++.++=+.++.+ +.+++++=+..||- ||..|.+ -+-+|=+-|. .-..+=-=|||..-+
T Consensus 111 ~~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRr----a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv 186 (466)
T KOG0686|consen 111 GYLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRR----ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV 186 (466)
T ss_pred ccccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHH----HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH
Confidence 45566665555554 45788888888873 6665543 3344555554 222211145554443
Q ss_pred HhhccccccccCchhHhhhhhheeeecccc--ceeeccCCCC-cc---hhhh-hhh-hhhccccccccc
Q 001097 101 VADLVPRYALYCPTALEAATEVVIYMHNSS--VALINRGEDA-DG---VAFQ-TAS-ACIFGLGDICRT 161 (1158)
Q Consensus 101 ~adliprya~~cptaleaa~kv~i~m~~~~--~a~~~rged~-dg---va~~-ta~-aci~gl~dic~~ 161 (1158)
+= .--...+|.|.|-||+ ++.+++-+-. ++ ++.| ++| -|..||+.+|--
T Consensus 187 In------------m~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lk 243 (466)
T KOG0686|consen 187 IN------------MCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLK 243 (466)
T ss_pred HH------------HHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHH
Confidence 31 1236789999999998 4555655544 11 1111 122 399999999864
No 232
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=35.26 E-value=4.1e+02 Score=34.85 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHhccCCchHHHHHHhhccccc
Q 001097 86 SLITASRGCTSVQRIVADLVPRY 108 (1158)
Q Consensus 86 ~li~~srgc~svqri~adlipry 108 (1158)
++-.+|-|-++||+| -|+|-+-
T Consensus 127 YIs~vS~~g~kvq~v-kdiiL~s 148 (1106)
T KOG0162|consen 127 YISRVSGGGEKVQHV-KDIILQS 148 (1106)
T ss_pred HHHHhccCCcchhhh-hhHhhcc
Confidence 334455788999995 5776543
No 233
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.77 E-value=1.1e+02 Score=37.66 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=6.8
Q ss_pred HHHHhhccCCcce
Q 001097 587 IRFQIDRFGPLEH 599 (1158)
Q Consensus 587 L~~~F~~fGpLe~ 599 (1158)
|=.+|+-||++.+
T Consensus 247 lG~I~EiFGpV~~ 259 (483)
T KOG2236|consen 247 LGQIFEIFGPVKN 259 (483)
T ss_pred chhhhhhhcccCC
Confidence 3445555665543
No 234
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=33.65 E-value=1.4e+03 Score=31.98 Aligned_cols=9 Identities=11% Similarity=0.301 Sum_probs=3.7
Q ss_pred eeeccccCH
Q 001097 695 ALLMEFRTP 703 (1158)
Q Consensus 695 ~LpVEF~t~ 703 (1158)
+.+|+|+.+
T Consensus 1333 gsyVnyrhl 1341 (1605)
T KOG0260|consen 1333 GSYVNYRHL 1341 (1605)
T ss_pred ccchhHHHH
Confidence 344444443
No 235
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=33.34 E-value=55 Score=39.65 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=50.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee----------ecC-------CCCCeeeccccCHHHHHHHHHHHhhh
Q 001097 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----------TDL-------SCEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 654 ~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f----------~dl-------seK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
+++.|.+-+.+-.-.-|-|..-|..+|.+--+++ ..+ ..+.+++|||++.+-|.-|.+-|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6999999999998888888888877773333222 122 23889999999999999999888554
Q ss_pred ccccC
Q 001097 717 RKSRS 721 (1158)
Q Consensus 717 r~~rs 721 (1158)
+-.|.
T Consensus 310 ~~wr~ 314 (484)
T KOG1855|consen 310 QNWRM 314 (484)
T ss_pred hhhhh
Confidence 43333
No 236
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=33.30 E-value=81 Score=39.19 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=55.4
Q ss_pred cccccccCceEE-ecc-CCCccCHHHHHHHh----hccCCcceEEEe----c-CCceEEEEecCHHHHHHHHHhhc--CC
Q 001097 563 AMDIFSASKQLW-LGS-FGPEASEAHIRFQI----DRFGPLEHFFFF----P-IKGFALVEYINIIDAIRAREYIR--NH 629 (1158)
Q Consensus 563 a~dv~~~S~~LW-VGn-L~~~vte~dL~~~F----~~fGpLe~V~~~----~-~rgfAFVeF~~i~DAv~A~~~L~--G~ 629 (1158)
++.|+.+..++. +|. ...+++.-||..+| +-||=|..+++. + .+.++++.|.+++||.+|+..+. |-
T Consensus 257 ~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~g~ 336 (555)
T PLN02805 257 SLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGI 336 (555)
T ss_pred EEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhCCC
Confidence 566666665554 442 22334556888876 468888888874 2 56788999999999999999976 44
Q ss_pred ceeEEEEeec
Q 001097 630 FSWRVKFMDV 639 (1158)
Q Consensus 630 ~~~RI~F~r~ 639 (1158)
.+..+||+|.
T Consensus 337 ~psa~ElmD~ 346 (555)
T PLN02805 337 QVSRVELLDE 346 (555)
T ss_pred CcEEEEEECH
Confidence 5669999986
No 237
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=32.83 E-value=67 Score=37.25 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=41.7
Q ss_pred CCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcc-eEEEecCCceEEEEecCH
Q 001097 559 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINI 616 (1158)
Q Consensus 559 g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe-~V~~~~~rgfAFVeF~~i 616 (1158)
|.+++-| +|||||+.++.-.||..++.+-|-.- ++.-.-.+|-||..|-|-
T Consensus 326 ~a~~~~d-------i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTD-------IKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccc-------eeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 5566766 79999999999999999999887654 444456899999999864
No 238
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=31.01 E-value=54 Score=38.70 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=42.5
Q ss_pred ccccceEEEccCCCcchhHH---HHHhhhcccccCCceee-------cCC---CCCeeeccccCHHHHHHHHHHHhhh
Q 001097 652 VGSCFHVYVGNIPNQWAKDE---ILHESYKVVYKGPYMVT-------DLS---CEGALLMEFRTPEEATTAMAHLRQH 716 (1158)
Q Consensus 652 ~~~s~~LwVG~Iss~~~kEE---LfsE~~kag~kgPv~f~-------dls---eK~~LpVEF~t~edA~~Am~~l~~~ 716 (1158)
|.--+-+||-+|++.+..|| +++--+=||..|-+.-+ .+. +--+.+|-|.+-|||+++.+-+.+-
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 44567899999999988888 33322223333333111 111 1235699999999999999988774
No 239
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.14 E-value=2.3e+02 Score=37.22 Aligned_cols=18 Identities=50% Similarity=0.822 Sum_probs=12.4
Q ss_pred HHHhccCCc--hHHHHHHhh
Q 001097 86 SLITASRGC--TSVQRIVAD 103 (1158)
Q Consensus 86 ~li~~srgc--~svqri~ad 103 (1158)
+|+..-+|| |++=||+|-
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 367788877 666666664
No 240
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=28.93 E-value=1.1e+02 Score=36.19 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=6.4
Q ss_pred ecccccccCccce
Q 001097 1013 WQGALCKSGVHYC 1025 (1158)
Q Consensus 1013 WqG~l~kSGAnyC 1025 (1158)
|-|....+++..|
T Consensus 190 ~Pg~~~a~~~~~g 202 (407)
T PF04625_consen 190 WPGMPPASPAPAG 202 (407)
T ss_pred CCCCCCCCCCCCC
Confidence 5555544444444
No 241
>PF15449 Retinal: Retinal protein
Probab=28.66 E-value=2.4e+02 Score=38.02 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=12.8
Q ss_pred CCCCCCCCccccCCCCCCCCCCCC
Q 001097 871 PIQPTQYLHPVYLPPNSSWDAGGS 894 (1158)
Q Consensus 871 ~~q~~~f~rPv~~pPs~pwD~~~p 894 (1158)
+...++++|-|.+.=. +|.+++-
T Consensus 1007 ~Ersp~~~Rk~SPtR~-hwsp~~e 1029 (1287)
T PF15449_consen 1007 QERSPPLVRKASPTRA-HWSPRAE 1029 (1287)
T ss_pred cccCCcccccCCCCcC-CCCCccc
Confidence 3444457776665444 4776663
No 242
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=28.39 E-value=64 Score=39.79 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=9.0
Q ss_pred HHhhhccCCchhhhh
Q 001097 1118 ARLMFILPYSQDICS 1132 (1158)
Q Consensus 1118 ~rlLfLlPpSeEic~ 1132 (1158)
..||...|.-+|+-+
T Consensus 390 EK~L~MmPt~eE~qk 404 (817)
T KOG1925|consen 390 EKLLTMMPTEEERQK 404 (817)
T ss_pred HHHHHhCCCHHHHHH
Confidence 445566666666655
No 243
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=27.84 E-value=84 Score=39.31 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=48.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ecC---CCCCeeeccccCHHHHHHHHHHHhh
Q 001097 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDL---SCEGALLMEFRTPEEATTAMAHLRQ 715 (1158)
Q Consensus 653 ~~s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f-~dl---seK~~LpVEF~t~edA~~Am~~l~~ 715 (1158)
+-+++|||-+.++.+---+|..-|.+++++....+ +.- .-+.+=||-.-|-+||...+.||.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr 469 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR 469 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh
Confidence 46899999999999877778777777776666554 333 3455667888889999999999987
No 244
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=27.68 E-value=31 Score=28.16 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=14.9
Q ss_pred chhhhHHHHHhhccc----ccceec
Q 001097 1090 KGFQDFVSYLKQREC----AGVIKI 1110 (1158)
Q Consensus 1090 k~fqDFisyLrqkd~----AGVIKi 1110 (1158)
.-|+||+.|+.+.+. .|++|+
T Consensus 8 eEF~dp~~yi~~i~~~g~~~Gi~KI 32 (34)
T PF02375_consen 8 EEFKDPIKYISSIEPEGEKYGICKI 32 (34)
T ss_dssp HHHS-HHHHHHHHHHTTGGGSEEEE
T ss_pred HHHhCHHHHHHHHHHHHHHCCEEEe
Confidence 459999999877654 677775
No 245
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.26 E-value=2.2e+02 Score=36.09 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=6.3
Q ss_pred cccceeccccc
Q 001097 1008 LLQYQWQGALC 1018 (1158)
Q Consensus 1008 ~i~~qWqG~l~ 1018 (1158)
..-..|+..+.
T Consensus 461 ~~~~~~~~~~~ 471 (620)
T PRK14954 461 VDLGSWQGKFM 471 (620)
T ss_pred cccHhhhhhcc
Confidence 33466776655
No 246
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=25.17 E-value=79 Score=36.80 Aligned_cols=147 Identities=10% Similarity=0.165 Sum_probs=96.1
Q ss_pred cCceEEeccCCCccCHHHHHHHhhccCCcceEEEecCC-------------ceEEEEecCHHHHHHHHHh----------
Q 001097 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-------------GFALVEYINIIDAIRAREY---------- 625 (1158)
Q Consensus 569 ~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~~r-------------gfAFVeF~~i~DAv~A~~~---------- 625 (1158)
-+|.|-.-|+-.++.=..+...|.+||+||+|.++... -.-.+-|..-+.+.+=...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999866 5677888887777664322
Q ss_pred -hcCCceeEEEEeec--------c-----C--CCCcc--cccccccccceEEEccCCCcchhHHHHHhhhcccccCC---
Q 001097 626 -IRNHFSWRVKFMDV--------G-----L--GTKGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--- 684 (1158)
Q Consensus 626 -L~G~~~~RI~F~r~--------~-----~--g~rg~--~~Gva~~~s~~LwVG~Iss~~~kEELfsE~~kag~kgP--- 684 (1158)
|+-..+ .+.|-.- + + -.... ++=+--+..|.|.|-.= ....+++++.+--.|-....
T Consensus 94 ~L~S~~L-~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 94 KLKSESL-TLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred hcCCcce-eEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCce
Confidence 222211 3444321 0 0 00000 11111246888888776 44447778777555541111
Q ss_pred -----ceeecC------CCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 685 -----YMVTDL------SCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 685 -----v~f~dl------seK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
+.++.- =.++++.+=|-+.-=|+.+|.+||.+.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~ 215 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNS 215 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcc
Confidence 111111 146899999999999999999999763
No 247
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=25.04 E-value=1.6e+02 Score=31.18 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHhhccCCcceEEEecCCceEEEEecCHHHHHHHHHhhcCCcee
Q 001097 584 EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1158)
Q Consensus 584 e~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L~G~~~~ 632 (1158)
..+|.+.|..||.+.=|+|.. +--+|.|++-+-|.+|+ .|+|..++
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEET
T ss_pred HHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEEC
Confidence 357889999999888887776 57799999999999996 58888776
No 248
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.73 E-value=6e+02 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=7.1
Q ss_pred HHHHHH--HHHHHHhhc
Q 001097 58 VYECYR--RLKACIAQK 72 (1158)
Q Consensus 58 v~~~y~--r~k~~~~~~ 72 (1158)
+|+.|| .|..+|.|.
T Consensus 5 l~~KyRP~~f~eiiGqe 21 (824)
T PRK07764 5 LYRRYRPATFAEVIGQE 21 (824)
T ss_pred HHHHhCCCCHHHhcCcH
Confidence 344453 455555443
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=23.73 E-value=4.2e+02 Score=32.64 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=5.3
Q ss_pred hHHHhhhccCC
Q 001097 1116 IWARLMFILPY 1126 (1158)
Q Consensus 1116 ~w~rlLfLlPp 1126 (1158)
..-|+=|-++-
T Consensus 390 ~fvr~efpl~n 400 (523)
T KOG3837|consen 390 QFVRLEFPLEN 400 (523)
T ss_pred hhhcccccccc
Confidence 34455555544
No 250
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=23.36 E-value=88 Score=35.07 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=54.5
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee----ecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv~f----~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
--.|-|-|+-..++-|+|--=|.+.|.+|++-| ..-+.++.+||-|.--.||--||+-|.+.-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ 79 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV 79 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee
Confidence 457889999999999999999999999998855 247889999999999889988888888754
No 251
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=23.33 E-value=41 Score=41.31 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=49.1
Q ss_pred hhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHHHh
Q 001097 147 TASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVFLG 216 (1158)
Q Consensus 147 ta~aci~gl~dic~~a~s~~~~s~v~~gicsav~~~vltffi~~f~gkdi~~~~~~~~~~~~d~~e~~~~ 216 (1158)
++.+|+.|||-||..+..+.|=.+++-|+-++++-|.++- -++.+|+-||.++|.+
T Consensus 291 ~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~k--------------L~~~lkvDDpl~~f~~ 346 (500)
T KOG0682|consen 291 LCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANK--------------LKERLKVDDPLDAFAV 346 (500)
T ss_pred hHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHH--------------HHHHhcCCcHHHHHHH
Confidence 5789999999999999999999999999999998887654 3678888999988854
No 252
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=23.10 E-value=2.7e+02 Score=37.50 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=4.0
Q ss_pred hhhhHHHH
Q 001097 1091 GFQDFVSY 1098 (1158)
Q Consensus 1091 ~fqDFisy 1098 (1158)
.|.+|...
T Consensus 238 ~f~ef~~a 245 (1228)
T PRK12270 238 DFAQFWAA 245 (1228)
T ss_pred CHHHHHHH
Confidence 35555444
No 253
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=22.82 E-value=28 Score=40.34 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhc
Q 001097 703 PEEATTAMAHLRQHR 717 (1158)
Q Consensus 703 ~edA~~Am~~l~~~r 717 (1158)
+-|++.+.-.+|.+.
T Consensus 110 l~~~i~~i~~~ke~n 124 (312)
T PF01213_consen 110 LSEAIQKIQEFKEKN 124 (312)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcc
Confidence 345555555555444
No 254
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=22.71 E-value=1.5e+02 Score=34.13 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.2
Q ss_pred eccccc
Q 001097 1013 WQGALC 1018 (1158)
Q Consensus 1013 WqG~l~ 1018 (1158)
.-|++.
T Consensus 204 maGtf~ 209 (274)
T PLN02983 204 MAGTFY 209 (274)
T ss_pred cCeEEE
Confidence 333333
No 255
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=22.67 E-value=18 Score=43.15 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=56.0
Q ss_pred ecCCcccccccccCceEEeccCCCccCHHHHHHHhhccCCcceEEEec--CCceEEEEecCHHHHHHHHHhh
Q 001097 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYI 626 (1158)
Q Consensus 557 ~~g~p~a~dv~~~S~~LWVGnL~~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~L 626 (1158)
|+-+.+|..|=-.-+.++|++|..++-..|+.+.|.+||.+---.++. ...|+-|+|..----+.|.+.+
T Consensus 138 Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 138 LPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred CChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhc
Confidence 555667888877789999999999999999999999999987444443 6677789999777777776544
No 256
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=22.14 E-value=1.2e+02 Score=34.37 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=47.7
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCc--ee-ecCCCCCeeeccccCHHHHHHHHHHHhhhc
Q 001097 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPY--MV-TDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1158)
Q Consensus 655 s~~LwVG~Iss~~~kEELfsE~~kag~kgPv--~f-~dlseK~~LpVEF~t~edA~~Am~~l~~~r 717 (1158)
+-.|+|.+.+-.++.++|..-|..++.+.-+ .+ ......+.+-|-|.+-+||.+||+-+++-.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA 148 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc
Confidence 4569999999998888777777666422222 22 246777899999999999999999988744
No 257
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=22.11 E-value=2.1e+03 Score=29.46 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=5.3
Q ss_pred cCCcCCCCCCCC
Q 001097 382 EGSEVDSDEDDS 393 (1158)
Q Consensus 382 e~~~~~~d~~~s 393 (1158)
|..-+|.||++-
T Consensus 85 ~~~~~~~~~~~~ 96 (982)
T PF03154_consen 85 EKPASESEEPER 96 (982)
T ss_pred cccccccccccc
Confidence 444444444443
No 258
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.93 E-value=2.8e+02 Score=29.30 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc--------CCchHHHHHHHHHHhcc
Q 001097 37 PPPLSQDEIQSRRRNKDEIRSVYECYRRLKACIAQKDA--------RRLPELEQAYLSLITAS 91 (1158)
Q Consensus 37 ~~p~~~ee~~~~~rn~~e~r~v~~~y~r~k~~~~~~~~--------~~~~~leq~y~~li~~s 91 (1158)
||--|+++|.+-+|.-+.|..+.|...-||..|..++- |.|-+|-|.-.+||.+=
T Consensus 27 p~tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl 89 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSL 89 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 55688999999999999999999999999999999985 47889999999988765
No 259
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=21.54 E-value=3.3e+02 Score=25.13 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.4
Q ss_pred eEEeccCCCccCHHHHHHHhhcc----CCcceEEEecCCceEEEEecCHHHHHHHHHhh
Q 001097 572 QLWLGSFGPEASEAHIRFQIDRF----GPLEHFFFFPIKGFALVEYINIIDAIRAREYI 626 (1158)
Q Consensus 572 ~LWVGnL~~~vte~dL~~~F~~f----GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L 626 (1158)
.|.|-++ .+.+.+||+.-|..| ++..==|+ +-.-|=|-|.+.++|.+|+.+|
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWI--dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWI--DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEe--cCCcEEEEECCHHHHHHHHHcC
Confidence 4566665 458899999999999 55433344 3356789999999999999876
No 260
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=20.98 E-value=3.2e+02 Score=36.97 Aligned_cols=7 Identities=29% Similarity=0.985 Sum_probs=5.7
Q ss_pred hhhHHHH
Q 001097 1092 FQDFVSY 1098 (1158)
Q Consensus 1092 fqDFisy 1098 (1158)
|.+||.|
T Consensus 172 FThlI~k 178 (1228)
T PRK12270 172 FTHLIGY 178 (1228)
T ss_pred HHHHHHH
Confidence 8888877
No 261
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=20.12 E-value=3.4e+02 Score=27.33 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=43.0
Q ss_pred EEeccCCCccCHHHHHHHhhccC-CcceEEEec----CCceEEEEecCHHHHHHHHHhhcCCce
Q 001097 573 LWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1158)
Q Consensus 573 LWVGnL~~~vte~dL~~~F~~fG-pLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~L~G~~~ 631 (1158)
+-+...+.-.+-++|....+.+- .|+.+++.+ .|.-+++.|++..+|.+=.+..+|+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34444555556666765555553 466777754 777899999999999999999999853
Done!